Psyllid ID: psy786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MKTNEIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEcccccHHHHHHHHHHHHccccccccccEEEEEEccccccccHHHHHHHHcHHcccccEEEEEEccccccccccccccccHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHcccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHcccEEEEEEcccccHccccHHHHHHHHHcccccEEEEEEccccEEcccccccccccccHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccEEEEEEEEc
Coil and Loop (DISEMBL)
mktneipfrtnrskawaeaglfpvselknlrkidsdleghptprlnfidvgtgslgqGLSVAAGMAYVGKYfdkasyrtyclvgdgesaegSIWEALHFASyykldnlcvifdinrlgqseptslqhQTEVYRKRLdafgfnavvvdghdvEHLVKVSSFKLQKAIGcvwiqrgcc
Flexible Loop (DISEMBL)
mktneipfrtnrskawaeaglfpvseLKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVssfklqkaigcvwiqrgcc
Low Complexity Region (SEG)
MKTNEIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Disordered region (IsUnstruct)
***************WAEAGLFPVSELKNLRKID*****HPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ*****LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC*
Disordered Region (DISOPRED)
***NEIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Disordered Region (DISEMBL)
MKTNEIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Disordered Region (DISPRO)
****EIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTNEIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q6B855	623	Transketolase OS=Bos taur	yes	N/A	0.801	0.226	0.702	4e-57
Q5R4C1	623	Transketolase OS=Pongo ab	yes	N/A	0.801	0.226	0.702	1e-56
P50137	623	Transketolase OS=Rattus n	yes	N/A	0.801	0.226	0.687	4e-56
P40142	623	Transketolase OS=Mus musc	yes	N/A	0.801	0.226	0.673	2e-55
Q60HC7	623	Transketolase OS=Macaca f	N/A	N/A	0.801	0.226	0.680	2e-55
P29401	623	Transketolase OS=Homo sap	yes	N/A	0.801	0.226	0.680	6e-55
Q5R1W6	623	Transketolase OS=Pan trog	yes	N/A	0.801	0.226	0.680	7e-55
Q9D4D4	627	Transketolase-like protei	no	N/A	0.801	0.224	0.687	4e-53
Q2NKZ4	626	Transketolase-like protei	no	N/A	0.846	0.238	0.637	4e-52
Q9H0I9	626	Transketolase-like protei	no	N/A	0.806	0.226	0.633	2e-50

>sp|Q6B855|TKT_BOVIN Transketolase OS=Bos taurus GN=TKT PE=2 SV=1

 Score =  220 bits (560), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 114/141 (80%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG  P SEL NLRKI+SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLPESELLNLRKINSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YC++GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 146 SYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG+NAV+VDGH VE L K
Sbjct: 206 CEAFGWNAVIVDGHSVEELCK 226

Bos taurus (taxid: 9913)
EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 1

>sp|Q5R4C1|TKT_PONAB Transketolase OS=Pongo abelii GN=TKT PE=2 SV=1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 114/141 (80%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL VA GMAY GKYFDKA
Sbjct: 86  WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGVACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 146 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++AV+VDGH VE L K
Sbjct: 206 CEAFGWHAVIVDGHSVEELCK 226

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|P50137|TKT_RAT Transketolase OS=Rattus norvegicus GN=Tkt PE=1 SV=1

 Score =  216 bits (551), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 113/141 (80%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YC++GDGE +EGS+WEA+ FA  YKLDNL  IFDINRLGQS+P  LQHQ +VY+KR
Sbjct: 146 SYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVAIFDINRLGQSDPAPLQHQVDVYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 206 CEAFGWHAIIVDGHSVEELCK 226

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|P40142|TKT_MOUSE Transketolase OS=Mus musculus GN=Tkt PE=1 SV=1

 Score =  214 bits (546), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YC++GDGE +EGS+WEA+ FA  YKLDNL  IFDINRLGQS+P  LQHQ ++Y+KR
Sbjct: 146 SYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVAIFDINRLGQSDPAPLQHQVDIYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++ ++VDGH VE L K
Sbjct: 206 CEAFGWHTIIVDGHSVEELCK 226

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q60HC7|TKT_MACFA Transketolase OS=Macaca fascicularis GN=TKT PE=2 SV=1

 Score =  214 bits (545), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 113/141 (80%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++++KR
Sbjct: 146 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIHQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 206 CEAFGWHAIIVDGHSVEELCK 226

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|P29401|TKT_HUMAN Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3

 Score =  213 bits (541), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 112/141 (79%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG    +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 146 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 206 CEAFGWHAIIVDGHSVEELCK 226

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5R1W6|TKT_PANTR Transketolase OS=Pan troglodytes GN=TKT PE=2 SV=1

 Score =  213 bits (541), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 112/141 (79%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG    +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 86  WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 146 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 206 CEAFGWHAIIVDGHSVEELCK 226

Pan troglodytes (taxid: 9598)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9D4D4|TKTL2_MOUSE Transketolase-like protein 2 OS=Mus musculus GN=Tktl2 PE=2 SV=1

 Score =  207 bits (526), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/141 (68%), Positives = 109/141 (77%)

Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           W E G    S+L NLRKI  DLEGHPTPRL+F+DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 88  WVEVGRICESDLLNLRKIHCDLEGHPTPRLSFVDVATGSLGQGLGAACGMAYTGKYFDKA 147

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR +CL+GDGES+EGS+WEAL FAS+Y LDNL  IFD+NRLGQS    L+H T VY KR
Sbjct: 148 SYRVFCLMGDGESSEGSVWEALAFASHYNLDNLVAIFDVNRLGQSGTAPLEHCTAVYEKR 207

Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
             AFG+N  VVDGHDVE L +
Sbjct: 208 CQAFGWNTYVVDGHDVEALCQ 228

Plays an essential role in total transketolase activity and cell proliferation in cancer cells; after transfection with anti-TKTL1 siRNA, total transketolase activity dramatically decreases and proliferation was significantly inhibited in cancer cells. Play a pivotal role in carcinogenesis.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q2NKZ4|TKTL2_BOVIN Transketolase-like protein 2 OS=Bos taurus GN=TKTL2 PE=2 SV=1

 Score =  203 bits (517), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 112/149 (75%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AW EAG     +L NLR I  DLEGHPTPRL+F+DV TGSLGQGL  A GMAY GKY DK
Sbjct: 85  AWVEAGSISEPDLLNLRTIHCDLEGHPTPRLSFVDVATGSLGQGLGAACGMAYTGKYLDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           ASYR +CL+GDGES+EGS+WEAL FAS+Y LDNL  +FD+NRLGQS    L+H T++YR 
Sbjct: 145 ASYRVFCLLGDGESSEGSVWEALAFASHYGLDNLVAVFDVNRLGQSGVAPLKHCTDIYRN 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163
           R +AFG+N  +VDGHDVE L +  S   Q
Sbjct: 205 RCEAFGWNTYLVDGHDVEALCQAFSQAAQ 233

Plays an essential role in total transketolase activity and cell proliferation in cancer cells; after transfection with anti-TKTL1 siRNA, total transketolase activity dramatically decreases and proliferation was significantly inhibited in cancer cells. Play a pivotal role in carcinogenesis.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9H0I9|TKTL2_HUMAN Transketolase-like protein 2 OS=Homo sapiens GN=TKTL2 PE=2 SV=1

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 108/142 (76%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AW E G    S+L NLRK+ SDLE HPTPRL F+DV TGSLGQGL  A GMAY GKY DK
Sbjct: 86  AWVEVGDISESDLLNLRKLHSDLERHPTPRLPFVDVATGSLGQGLGTACGMAYTGKYLDK 145

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           ASYR +CL+GDGES+EGS+WEA  FAS+Y LDNL  +FD+NRLGQS P  L+H  ++Y+ 
Sbjct: 146 ASYRVFCLMGDGESSEGSVWEAFAFASHYNLDNLVAVFDVNRLGQSGPAPLEHGADIYQN 205

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
             +AFG+N  +VDGHDVE L +
Sbjct: 206 CCEAFGWNTYLVDGHDVEALCQ 227

Plays an essential role in total transketolase activity and cell proliferation in cancer cells; after transfection with anti-TKTL1 siRNA, total transketolase activity dramatically decreases and proliferation was significantly inhibited in cancer cells. Play a pivotal role in carcinogenesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
345488771	622	PREDICTED: transketolase-like isoform 2	0.806	0.228	0.887	2e-72
156550408	627	PREDICTED: transketolase-like isoform 1	0.806	0.226	0.887	3e-72
66503776	627	PREDICTED: transketolase isoform 2 [Apis	0.806	0.226	0.887	5e-72
380026387	627	PREDICTED: transketolase-like [Apis flor	0.806	0.226	0.887	6e-72
350423538	627	PREDICTED: transketolase-like protein 2-	0.806	0.226	0.880	7e-72
383852220	622	PREDICTED: transketolase-like protein 2-	0.806	0.228	0.887	7e-72
350423542	622	PREDICTED: transketolase-like protein 2-	0.806	0.228	0.880	7e-72
383852218	627	PREDICTED: transketolase-like protein 2-	0.806	0.226	0.887	8e-72
328789361	622	PREDICTED: transketolase isoform 1 [Apis	0.806	0.228	0.887	8e-72
340710249	627	PREDICTED: transketolase-like protein 2-	0.806	0.226	0.880	2e-71

>gi|345488771|ref|XP_003425981.1| PREDICTED: transketolase-like isoform 2 [Nasonia vitripennis]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 132/142 (92%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP  EL NLRK DSDLEGHPTPRLNF+DV TGSLGQGLSVAAGMAYVGKYFDK
Sbjct: 80  AWAEAGLFPTKELLNLRKFDSDLEGHPTPRLNFVDVATGSLGQGLSVAAGMAYVGKYFDK 139

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           ASYRTYCL+GDGESAEGSIWEALHFAS+Y LDNLC IFD+NRLGQSEPTSLQH  EVYRK
Sbjct: 140 ASYRTYCLIGDGESAEGSIWEALHFASFYNLDNLCAIFDVNRLGQSEPTSLQHNMEVYRK 199

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE LVK
Sbjct: 200 RLEAFGFNALVVDGHDVEELVK 221

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156550408|ref|XP_001600105.1| PREDICTED: transketolase-like isoform 1 [Nasonia vitripennis]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 132/142 (92%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP  EL NLRK DSDLEGHPTPRLNF+DV TGSLGQGLSVAAGMAYVGKYFDK
Sbjct: 85  AWAEAGLFPTKELLNLRKFDSDLEGHPTPRLNFVDVATGSLGQGLSVAAGMAYVGKYFDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           ASYRTYCL+GDGESAEGSIWEALHFAS+Y LDNLC IFD+NRLGQSEPTSLQH  EVYRK
Sbjct: 145 ASYRTYCLIGDGESAEGSIWEALHFASFYNLDNLCAIFDVNRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE LVK
Sbjct: 205 RLEAFGFNALVVDGHDVEELVK 226

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66503776|ref|XP_623357.1| PREDICTED: transketolase isoform 2 [Apis mellifera]

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRK+DSDLEGHPTPRLNFIDVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 85  AWAEAGLFPTSELLNLRKLDSDLEGHPTPRLNFIDVGTGSLGQGLSVSAGMAYVGKNFDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGSIWEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 145 ANYRVYCLIGDGEAAEGSIWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 205 RLEAFGFNALVVDGHDVEELAK 226

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026387|ref|XP_003696933.1| PREDICTED: transketolase-like [Apis florea]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRK+DSDLEGHPTPRLNFIDVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 85  AWAEAGLFPTSELLNLRKLDSDLEGHPTPRLNFIDVGTGSLGQGLSVSAGMAYVGKNFDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGSIWEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 145 ANYRVYCLIGDGEAAEGSIWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 205 RLEAFGFNALVVDGHDVEELAK 226

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423538|ref|XP_003493512.1| PREDICTED: transketolase-like protein 2-like isoform 1 [Bombus impatiens]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRKIDSDLEGHPTPRLNF+DVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 85  AWAEAGLFPASELLNLRKIDSDLEGHPTPRLNFVDVGTGSLGQGLSVSAGMAYVGKNFDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGS+WEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 145 ANYRVYCLIGDGEAAEGSVWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 205 RLEAFGFNALVVDGHDVEELAK 226

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852220|ref|XP_003701626.1| PREDICTED: transketolase-like protein 2-like isoform 2 [Megachile rotundata]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRKIDSDLEGHPTPRLNF+DVGTGSLGQGLSVAAGMAYVGK +DK
Sbjct: 80  AWAEAGLFPASELLNLRKIDSDLEGHPTPRLNFVDVGTGSLGQGLSVAAGMAYVGKNYDK 139

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCLVGDGE+AEGSIWEALHF+SYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 140 ANYRVYCLVGDGEAAEGSIWEALHFSSYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 199

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 200 RLEAFGFNALVVDGHDVEELAK 221

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423542|ref|XP_003493513.1| PREDICTED: transketolase-like protein 2-like isoform 2 [Bombus impatiens]

 Score =  275 bits (702), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRKIDSDLEGHPTPRLNF+DVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 80  AWAEAGLFPASELLNLRKIDSDLEGHPTPRLNFVDVGTGSLGQGLSVSAGMAYVGKNFDK 139

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGS+WEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 140 ANYRVYCLIGDGEAAEGSVWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 199

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 200 RLEAFGFNALVVDGHDVEELAK 221

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852218|ref|XP_003701625.1| PREDICTED: transketolase-like protein 2-like isoform 1 [Megachile rotundata]

 Score =  275 bits (702), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRKIDSDLEGHPTPRLNF+DVGTGSLGQGLSVAAGMAYVGK +DK
Sbjct: 85  AWAEAGLFPASELLNLRKIDSDLEGHPTPRLNFVDVGTGSLGQGLSVAAGMAYVGKNYDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCLVGDGE+AEGSIWEALHF+SYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 145 ANYRVYCLVGDGEAAEGSIWEALHFSSYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 205 RLEAFGFNALVVDGHDVEELAK 226

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789361|ref|XP_623196.3| PREDICTED: transketolase isoform 1 [Apis mellifera]

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP SEL NLRK+DSDLEGHPTPRLNFIDVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 80  AWAEAGLFPTSELLNLRKLDSDLEGHPTPRLNFIDVGTGSLGQGLSVSAGMAYVGKNFDK 139

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGSIWEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 140 ANYRVYCLIGDGEAAEGSIWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 199

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 200 RLEAFGFNALVVDGHDVEELAK 221

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710249|ref|XP_003393706.1| PREDICTED: transketolase-like protein 2-like isoform 2 [Bombus terrestris]

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 133/142 (93%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
           AWAEAGLFP +EL NLRKIDSDLEGHPTPRLNF+DVGTGSLGQGLSV+AGMAYVGK FDK
Sbjct: 85  AWAEAGLFPANELLNLRKIDSDLEGHPTPRLNFVDVGTGSLGQGLSVSAGMAYVGKNFDK 144

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           A+YR YCL+GDGE+AEGSIWEALHFASYYKLDNLC IFDINRLGQSEPTSLQH  EVYRK
Sbjct: 145 ANYRVYCLIGDGEAAEGSIWEALHFASYYKLDNLCAIFDINRLGQSEPTSLQHNMEVYRK 204

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           RL+AFGFNA+VVDGHDVE L K
Sbjct: 205 RLEAFGFNALVVDGHDVEELAK 226

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
FB|FBgn0037607	626	CG8036 [Drosophila melanogaste	0.806	0.226	0.838	5.4e-63
ZFIN|ZDB-GENE-030909-13	625	tkt "transketolase" [Danio rer	0.806	0.227	0.704	1.9e-53
FB|FBgn0036784	623	CG5103 [Drosophila melanogaste	0.784	0.221	0.702	4.9e-53
UNIPROTKB|Q6B855	623	TKT "Transketolase" [Bos tauru	0.801	0.226	0.702	1.7e-52
UNIPROTKB|A7E3W4	596	TKT "Transketolase" [Bos tauru	0.801	0.236	0.702	2.1e-52
UNIPROTKB|A7Z014	623	TKT "TKT protein" [Bos taurus	0.801	0.226	0.702	2.1e-52
RGD|621036	623	Tkt "transketolase" [Rattus no	0.801	0.226	0.687	7.2e-52
WB|WBGene00008506	618	tkt-1 [Caenorhabditis elegans	0.801	0.228	0.702	9.2e-52
MGI|MGI:105992	623	Tkt "transketolase" [Mus muscu	0.801	0.226	0.673	2.4e-51
UNIPROTKB|F1P1A5	630	TKT "Uncharacterized protein"	0.806	0.225	0.676	3.1e-51

FB|FBgn0037607 CG8036 [Drosophila melanogaster (taxid:7227)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 119/142 (83%), Positives = 131/142 (92%)

Query:    15 AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
             AWAEAGLFP+++L NLRKIDSDLEGHPTPRLNFIDVGTGSLGQG++V AGMAYVGK FDK
Sbjct:    84 AWAEAGLFPIADLNNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGVAVGAGMAYVGKNFDK 143

Query:    75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
             A YRTY +VGDGESAEGSIWE+LHFA +YKLDNLCVIFD+NRLGQSE TSLQH+ +VYR 
Sbjct:   144 ADYRTYVVVGDGESAEGSIWESLHFAGHYKLDNLCVIFDVNRLGQSEATSLQHKLDVYRD 203

Query:   135 RLDAFGFNAVVVDGHDVEHLVK 156
             RL+AFGFNAVVVDGHDVE L K
Sbjct:   204 RLEAFGFNAVVVDGHDVEELSK 225

GO:0004802 "transketolase activity" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0031935 "regulation of chromatin silencing" evidence=IMP

ZFIN|ZDB-GENE-030909-13 tkt "transketolase" [Danio rerio (taxid:7955)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 100/142 (70%), Positives = 114/142 (80%)

Query:    15 AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
             AWAEAG    S+L NLRKIDSDLEGHPTP+L F+DV TGSLGQGL  A GMAY GKY DK
Sbjct:    84 AWAEAGYIKASDLLNLRKIDSDLEGHPTPKLAFVDVATGSLGQGLGAACGMAYTGKYLDK 143

Query:    75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
             +SYR YC++GDGE +EGS+WEA+ FAS+YKLDNL  I D+NRLGQSEP  LQH   VY++
Sbjct:   144 SSYRVYCMLGDGECSEGSVWEAMAFASHYKLDNLVAILDVNRLGQSEPAPLQHNVNVYKE 203

Query:   135 RLDAFGFNAVVVDGHDVEHLVK 156
             R +AFGFN  VVDGHDVE L K
Sbjct:   204 RCEAFGFNTYVVDGHDVEELCK 225

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004802 "transketolase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

FB|FBgn0036784 CG5103 [Drosophila melanogaster (taxid:7227)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 99/141 (70%), Positives = 123/141 (87%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAGLFPV EL+NLRK+DSDLEGHPTPRL+F+DV TGSLGQG+SVAAGMAYVGK+ DKA
Sbjct:    85 WAEAGLFPVEELRNLRKVDSDLEGHPTPRLSFVDVSTGSLGQGISVAAGMAYVGKHLDKA 144

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
              YRTY +VGDGE+ EG++WE+LHFA +Y LDNLCVIFD+N++  S+   +  + EVYR+R
Sbjct:   145 DYRTYVIVGDGEATEGAVWESLHFAGHYCLDNLCVIFDMNKIFCSD---IGTEMEVYRER 201

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
             LDAFGFNA+V++GHD++ L K
Sbjct:   202 LDAFGFNALVLNGHDIDELAK 222

GO:0004802 "transketolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q6B855 TKT "Transketolase" [Bos taurus (taxid:9913)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 99/141 (70%), Positives = 114/141 (80%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAG  P SEL NLRKI+SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct:    86 WAEAGFLPESELLNLRKINSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
             SYR YC++GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct:   146 SYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
              +AFG+NAV+VDGH VE L K
Sbjct:   206 CEAFGWNAVIVDGHSVEELCK 226

GO:0004802 "transketolase activity" evidence=ISS

GO:0040008 "regulation of growth" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A7E3W4 TKT "Transketolase" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 99/141 (70%), Positives = 113/141 (80%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAG  P SEL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct:    59 WAEAGFLPESELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 118

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
             SYR YC++GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct:   119 SYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 178

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
              +AFG+NAV+VDGH VE L K
Sbjct:   179 CEAFGWNAVIVDGHSVEELCK 199

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|A7Z014 TKT "TKT protein" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 99/141 (70%), Positives = 113/141 (80%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAG  P SEL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct:    86 WAEAGFLPESELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
             SYR YC++GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct:   146 SYRVYCMLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 205

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
              +AFG+NAV+VDGH VE L K
Sbjct:   206 CEAFGWNAVIVDGHSVEELCK 226

GO:0048037 "cofactor binding" evidence=IEA

GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004802 "transketolase activity" evidence=IEA

RGD|621036 Tkt "transketolase" [Rattus norvegicus (taxid:10116)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 97/141 (68%), Positives = 113/141 (80%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct:    86 WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
             SYR YC++GDGE +EGS+WEA+ FA  YKLDNL  IFDINRLGQS+P  LQHQ +VY+KR
Sbjct:   146 SYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVAIFDINRLGQSDPAPLQHQVDVYQKR 205

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
              +AFG++A++VDGH VE L K
Sbjct:   206 CEAFGWHAIIVDGHSVEELCK 226

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004802 "transketolase activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=IDA

GO:0008152 "metabolic process" evidence=ISO

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IDA

GO:0030976 "thiamine pyrophosphate binding" evidence=IDA

GO:0040008 "regulation of growth" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=ISO

GO:0046390 "ribose phosphate biosynthetic process" evidence=IDA

GO:0048029 "monosaccharide binding" evidence=IDA

GO:0048037 "cofactor binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

WB|WBGene00008506 tkt-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 99/141 (70%), Positives = 115/141 (81%)

Query:    15 AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
             AW EAGL    ++ +LRKIDSD+EGHPTPRLNFIDV TGSLGQGL VA GMAYVGKY DK
Sbjct:    81 AWEEAGLLSHEQVLSLRKIDSDIEGHPTPRLNFIDVATGSLGQGLGVATGMAYVGKYIDK 140

Query:    75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
             ASYR +CL+GDGESAEGS+WEA  FAS YKLDNL  I D+NRLGQS+ TSL H  E Y+ 
Sbjct:   141 ASYRVFCLLGDGESAEGSVWEAAAFASIYKLDNLVAIVDVNRLGQSQATSLGHDVETYKA 200

Query:   135 RLDAFGFNAVVVDGHDVEHLV 155
             R  AFGFNA++V+GH+V+ L+
Sbjct:   201 RFAAFGFNAIIVNGHNVDELL 221

GO:0008152 "metabolic process" evidence=IEA

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

MGI|MGI:105992 Tkt "transketolase" [Mus musculus (taxid:10090)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query:    16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
             WAEAG  P +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct:    86 WAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 145

Query:    76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
             SYR YC++GDGE +EGS+WEA+ FA  YKLDNL  IFDINRLGQS+P  LQHQ ++Y+KR
Sbjct:   146 SYRVYCMLGDGEVSEGSVWEAMAFAGIYKLDNLVAIFDINRLGQSDPAPLQHQVDIYQKR 205

Query:   136 LDAFGFNAVVVDGHDVEHLVK 156
              +AFG++ ++VDGH VE L K
Sbjct:   206 CEAFGWHTIIVDGHSVEELCK 226

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004802 "transketolase activity" evidence=ISO;IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006098 "pentose-phosphate shunt" evidence=ISO

GO:0008152 "metabolic process" evidence=IDA

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

GO:0030976 "thiamine pyrophosphate binding" evidence=ISO

GO:0040008 "regulation of growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=ISO

GO:0046390 "ribose phosphate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048029 "monosaccharide binding" evidence=ISO

GO:0048037 "cofactor binding" evidence=ISO

UNIPROTKB|F1P1A5 TKT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 96/142 (67%), Positives = 113/142 (79%)

Query:    15 AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
             AWAEAG    +EL NLRKIDS LEGHP PR  F DV TGSLGQGL  A GMAY GK+FD+
Sbjct:    86 AWAEAGFLQEAELLNLRKIDSVLEGHPVPRQAFTDVATGSLGQGLGAACGMAYTGKFFDR 145

Query:    75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
             ASYR YCL+GDGE +EGS+WEA+ FA +YKLDNL  IFD+NRLGQS+P  LQH  E+Y+K
Sbjct:   146 ASYRVYCLLGDGELSEGSVWEAMAFAGFYKLDNLVAIFDVNRLGQSDPAPLQHHVEIYQK 205

Query:   135 RLDAFGFNAVVVDGHDVEHLVK 156
             R +AFG++A++VDGH VE L K
Sbjct:   206 RCEAFGWHAIIVDGHSVEELCK 227

GO:0004802 "transketolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046166 "glyceraldehyde-3-phosphate biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4C1	TKT_PONAB	2, ., 2, ., 1, ., 1	0.7021	0.8011	0.2263	yes	N/A
P29401	TKT_HUMAN	2, ., 2, ., 1, ., 1	0.6808	0.8011	0.2263	yes	N/A
Q6B855	TKT_BOVIN	2, ., 2, ., 1, ., 1	0.7021	0.8011	0.2263	yes	N/A
P40142	TKT_MOUSE	2, ., 2, ., 1, ., 1	0.6737	0.8011	0.2263	yes	N/A
P50137	TKT_RAT	2, ., 2, ., 1, ., 1	0.6879	0.8011	0.2263	yes	N/A
Q5R1W6	TKT_PANTR	2, ., 2, ., 1, ., 1	0.6808	0.8011	0.2263	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
cd02012	255	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami	6e-72
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	3e-51
COG3959	243	COG3959, COG3959, Transketolase, N-terminal subuni	3e-49
pfam00456	333	pfam00456, Transketolase_N, Transketolase, thiamin	1e-44
COG0021	663	COG0021, TktA, Transketolase [Carbohydrate transpo	1e-34
TIGR00232	653	TIGR00232, tktlase_bact, transketolase, bacterial	3e-21
PLN02790	654	PLN02790, PLN02790, transketolase	3e-20
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	9e-20
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	2e-18
PTZ00089	661	PTZ00089, PTZ00089, transketolase; Provisional	2e-16
PRK12753	663	PRK12753, PRK12753, transketolase; Reviewed	3e-14
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	2e-12
PRK12754	663	PRK12754, PRK12754, transketolase; Reviewed	6e-12
cd02017	386	cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate	8e-12
COG2609	887	COG2609, AceE, Pyruvate dehydrogenase complex, deh	1e-11
TIGR03181	341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	7e-11
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	1e-09
cd02007	195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	6e-09
COG3957	793	COG3957, COG3957, Phosphoketolase [Carbohydrate tr	2e-06
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	5e-06
TIGR00759	885	TIGR00759, aceE, pyruvate dehydrogenase E1 compone	8e-06
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	2e-05
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	3e-05
PLN02234	641	PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate	7e-05
pfam09364	379	pfam09364, XFP_N, XFP N-terminal domain	8e-05
COG1154	627	COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [	1e-04
PRK05444	580	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate	0.001
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	0.002
COG0028	550	COG0028, IlvB, Thiamine pyrophosphate-requiring en	0.003
cd02011	227	cd02011, TPP_PK, Thiamine pyrophosphate (TPP) fami	0.004
PRK09405	891	PRK09405, aceE, pyruvate dehydrogenase subunit E1;	0.004

>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

 Score =  216 bits (554), Expect = 6e-72
 Identities = 71/143 (49%), Positives = 86/143 (60%), Gaps = 2/143 (1%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKYFD 73
             A AG  P  +LK  R++ S L GHP   L   ++V TGSLGQGLSVA GMA   K   
Sbjct: 66  VLALAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLL- 124

Query: 74  KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR 133
              YR Y L+GDGE  EGS+WEA  FA +YKLDNL  I D NR+    PT     TE   
Sbjct: 125 GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLA 184

Query: 134 KRLDAFGFNAVVVDGHDVEHLVK 156
           K+ +AFG+N + VDGHDVE ++ 
Sbjct: 185 KKFEAFGWNVIEVDGHDVEEILA 207

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score =  172 bits (438), Expect = 3e-51
 Identities = 59/149 (39%), Positives = 79/149 (53%), Gaps = 12/149 (8%)

Query: 15  AWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKY- 71
               AG    + +LKN R++ S   GHP       ++  TG LGQGL+ A GMA   KY 
Sbjct: 78  LLHLAGYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYL 137

Query: 72  ---FDKAS-----YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT 123
              F++       + TY L GDG+  EG   EA   A + KL NL VI+D NR+    PT
Sbjct: 138 AALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPT 197

Query: 124 SLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152
                TE  +KR +A+G++ + VDGHDVE
Sbjct: 198 EG-WFTEDVKKRFEAYGWHVIEVDGHDVE 225

Length = 586

>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

 Score =  159 bits (403), Expect = 3e-49
 Identities = 65/142 (45%), Positives = 84/142 (59%), Gaps = 2/142 (1%)

Query: 17  AEAGLFPVSELKNLRKIDSDLEGHPT-PRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           AE G FP  EL+  R+I S L GHP   +   ++V TGSLGQGLSVA GMA   K    +
Sbjct: 82  AEKGYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAK-LKGS 140

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
            YR Y ++GDGE  EG +WEA   A++YKLDNL  I D N+L     T      E    +
Sbjct: 141 PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADK 200

Query: 136 LDAFGFNAVVVDGHDVEHLVKV 157
            +AFG+  + VDGHD+E +V+ 
Sbjct: 201 WEAFGWEVIEVDGHDIEEIVEA 222

Length = 243

>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain

 Score =  149 bits (378), Expect = 1e-44
 Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 13/153 (8%)

Query: 16  WAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNF-IDVGTGSLGQGLSVAAGMA------- 66
               G    + +LK+ R++ S   GHP       ++V TG LGQG++ A GMA       
Sbjct: 73  LHLTGYDLSMEDLKSFRQLGSKTPGHPEFGHTAGVEVTTGPLGQGIANAVGMAIAEANLA 132

Query: 67  --YVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS 124
             Y    FD   + TY  +GDG   EG   EA   A + KL NL   +D NR+     T 
Sbjct: 133 ATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDDNRISIDGETE 192

Query: 125 LQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVK 156
           +    +   KR +A+G++ + V DGHDVE +  
Sbjct: 193 ISFTEDT-AKRFEAYGWHVIEVEDGHDVEAIAA 224

This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Length = 333

>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]

 Score =  127 bits (322), Expect = 1e-34
 Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 12/143 (8%)

Query: 23  PVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMA----YVGKYFDKASY 77
            + +LKN R++ S   GHP       ++  TG LGQGL+ A GMA    ++   F++  +
Sbjct: 85  SLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGF 144

Query: 78  -----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY 132
                 TY LVGDG   EG   EA   A + KL  L V++D N +     TSL   TE  
Sbjct: 145 DIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDV 203

Query: 133 RKRLDAFGFNAV-VVDGHDVEHL 154
            KR +A+G+N + V+DGHD+E +
Sbjct: 204 AKRFEAYGWNVIRVIDGHDLEAI 226

Length = 663

>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast

 Score = 89.4 bits (222), Expect = 3e-21
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 23  PVSELKNLRKIDSDLEGHPT-PRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDKASY 77
            + +LK  R++ S   GHP       ++  TG LGQG++ A GMA   K     F+K  +
Sbjct: 79  SIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGF 138

Query: 78  R-----TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY 132
                 TY  VGDG   EG  +E    A + KL  L V++D NR+           TE  
Sbjct: 139 EIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDV 197

Query: 133 RKRLDAFGFNAV-VVDGHDVE 152
            KR +A+G+  + V DGHD+ 
Sbjct: 198 AKRFEAYGWEVLEVEDGHDLA 218

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653

>gnl|CDD|215424 PLN02790, PLN02790, transketolase

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 19/149 (12%)

Query: 23  PVSELKNLRKIDSDLEGHPTPRLNF----IDVGTGSLGQGLSVAAGMAYVGKY----FDK 74
            + +LK  R+  S   GHP    NF    I+V TG LGQG++ A G+A   K+    F+K
Sbjct: 74  QMEDLKQFRQWGSRTPGHPE---NFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNK 130

Query: 75  A-----SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
                  + TYC++GDG   EG   EA   A ++ L  L V++D N +     T +   T
Sbjct: 131 PDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIA-FT 189

Query: 130 EVYRKRLDAFGFNAVVVDG--HDVEHLVK 156
           E   KR +A G++ + V     D + +  
Sbjct: 190 EDVDKRYEALGWHTIWVKNGNTDYDEIRA 218

Length = 654

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score = 84.2 bits (209), Expect = 9e-20
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 1/115 (0%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           G+G +G  + +AAG A   KY            GDG + +G   EAL+FA+ +KL  + V
Sbjct: 134 GSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFV 193

Query: 111 IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA 165
           I + N+   S P S Q   E+   R  A+G   V VDG+DV  + + +   +++A
Sbjct: 194 IEN-NQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERA 247

Length = 358

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           G G +G  + +AAG A   KY  +      C  GDG + EG   EAL+FA+ +KL  + V
Sbjct: 102 GNGIVGGQVPLAAGAALALKYRGEDRV-AVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160

Query: 111 IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA 165
             + N    S PTS Q        R  A+G   + VDG+DV  + + +   +++A
Sbjct: 161 CEN-NGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERA 214

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 19/147 (12%)

Query: 26  ELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY---------F 72
           +LKN R++ S   GHP    TP    ++V TG LGQG++ A G+A   K+          
Sbjct: 88  DLKNFRQLGSRTPGHPERHITPG---VEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGH 144

Query: 73  DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY 132
                  Y + GDG   EG   EAL  A +  L+ L V++D N++     T L   TE  
Sbjct: 145 PIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLS-FTEDV 203

Query: 133 RKRLDAFGFNAVVVD--GHDVEHLVKV 157
            K+ +A+G++ + VD    D + L K 
Sbjct: 204 EKKYEAYGWHVIEVDNGNTDFDGLRKA 230

Length = 661

>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 20/145 (13%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGK----YFDK 74
           P+ ELKN R++ S   GHP    TP    ++  TG LGQGL+ A G+A   +     F++
Sbjct: 83  PIEELKNFRQLHSKTPGHPEIGYTPG---VETTTGPLGQGLANAVGLAIAERTLAAQFNR 139

Query: 75  ASYR-----TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ- 128
             +      TY  +GDG   EG   E    A    L  L   +D N  G S     +   
Sbjct: 140 PGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHN--GISIDGETEGWF 197

Query: 129 TEVYRKRLDAFGFNAV-VVDGHDVE 152
           T+   KR +A+ ++ +  +DGHD +
Sbjct: 198 TDDTAKRFEAYHWHVIHEIDGHDPQ 222

Length = 663

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 39  GHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH 98
           G+  P+ N    G G +G  + + AG+A   KY          L GDG + +G  +EAL+
Sbjct: 90  GYYAPKNNRFYGGNGIVGAQVPLGAGIALAAKY-RGKKEVAITLFGDGATNQGQFFEALN 148

Query: 99  FASYYKLDNLCVIFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152
           FA+ +KL    VIF    N+   S P      +  Y  R   +G   + VDG D  
Sbjct: 149 FAALWKLP---VIFVCENNQYAISTPAERSSASTTYADRARGYGIPGIRVDGMDPL 201

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed

 Score = 62.7 bits (152), Expect = 6e-12
 Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 20/146 (13%)

Query: 22  FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF----- 72
            P+ ELKN R++ S   GHP    T     ++  TG LGQG++ A GMA   K       
Sbjct: 82  LPMEELKNFRQLHSKTPGHPEVGYTAG---VETTTGPLGQGIANAVGMAIAEKTLAAQFN 138

Query: 73  ----DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ 128
               D   + TY  +GDG   EG   E    A   KL  L   +D N  G S    ++  
Sbjct: 139 RPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDN--GISIDGHVEGW 196

Query: 129 -TEVYRKRLDAFGFNAVV-VDGHDVE 152
            T+    R +A+G++ +  +DGHD +
Sbjct: 197 FTDDTAMRFEAYGWHVIRGIDGHDAD 222

Length = 663

>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1 of E

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 25  SELKNLRKIDSD--LEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYVGKYF------DK 74
            +L N R+      L  +P P L  +F +  T S+G G   A   A   +Y       D 
Sbjct: 86  EQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDT 145

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
           +  + +  +GDGE  E     A+  A+  KLDNL  + + N 
Sbjct: 146 SDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNL 187

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. Length = 386

>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 40  HPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYRTYCLVGDGESAEGSI 93
           HP    +F    T S+G G   A   A   KY       D +  + +  +GDGE  E   
Sbjct: 179 HPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPES 238

Query: 94  WEALHFASYYKLDNLCVIFDINR 116
             A+  A+  KLDNL  + + N 
Sbjct: 239 RGAITEAAREKLDNLIFVINCNL 261

Length = 887

>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 8/93 (8%)

Query: 62  AAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDI--NRLGQ 119
           AAG+AY  K             GDG ++EG  +EAL+FA  +K     V+F +  N+   
Sbjct: 131 AAGVAYALKL-RGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAP---VVFFVQNNQWAI 186

Query: 120 SEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDV 151
           S P S Q     + +K + A+G   V VDG+DV
Sbjct: 187 SVPRSKQTAAPTLAQKAI-AYGIPGVQVDGNDV 218

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 12/106 (11%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           G G +G  + +A G+A+  KY    +  T C  GDG + +G  +E+ + A+ +KL    V
Sbjct: 108 GHGIVGAQVPLATGLAFANKYRGNDNV-TACFFGDGAANQGQFYESFNMAALWKLP---V 163

Query: 111 IFDI--NRLGQSEPTSLQH---QTEVYRKRLDAFGFNAVVVDGHDV 151
           IF I  N       T+++     T++Y KR ++FG     VDG DV
Sbjct: 164 IFVIENNLYAMG--TAVERSSSVTDLY-KRGESFGIPGERVDGMDV 206

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

 Score = 52.5 bits (127), Expect = 6e-09
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           GTG     +S A GMA V +       +   ++GDG    G  +EAL+ A Y K  N+ V
Sbjct: 73  GTGHSSTSISAALGMA-VARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLK-SNMIV 130

Query: 111 IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV 157
           I + N +  S                +  GF  +  VDGH++E L+KV
Sbjct: 131 ILNDNEMSISPNVGTPGNL------FEELGFRYIGPVDGHNIEALIKV 172

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195

>gnl|CDD|226466 COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism]

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 53  GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG---SIWEALHFASYYKLDNLC 109
           G LG  LS A G A     FD       C+VGDGE+  G   + W +  F +  +   + 
Sbjct: 153 GELGYALSHAYGAA-----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVL 207

Query: 110 VIFDINRLGQSEPTSL-QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAI 166
            I  +N      PT L +   E  +   + +G+  V V+G D   + ++ +  L  A 
Sbjct: 208 PILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAVLDTAF 265

Length = 793

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 27/131 (20%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYR------------TYCLVGDGESAEGSIWEALH 98
           G   +G+G+ +A G A+      ++ YR            T C  GDG +  G  +E L+
Sbjct: 126 GFAFIGEGIPIALGAAF------QSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLN 179

Query: 99  FASYYKLDNLCVIFDINR----LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL 154
            A  +KL    +IF +      +G +   S     E+++K  +AFG   + VDG DV  +
Sbjct: 180 MAVLWKLP---IIFVVENNQWAIGMAHHRS-TSIPEIHKKA-EAFGLPGIEVDGMDVLAV 234

Query: 155 VKVSSFKLQKA 165
            +V+   +++A
Sbjct: 235 REVAKEAVERA 245

Length = 341

>gnl|CDD|233117 TIGR00759, aceE, pyruvate dehydrogenase E1 component, homodimeric type

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 13  SKAWAEAGLFPVSELKNLRK-IDSD-LEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYV 68
           ++A+ E G     +L N R+ +  D L  +P P L  +F    T S+G G   A   A  
Sbjct: 146 ARAFLE-GRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARF 204

Query: 69  GKYF------DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
            KY       D    + +  +GDGE  E     A+ FA+  KLDNL   F IN
Sbjct: 205 MKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNL--TFVIN 255

Most members of this family are pyruvate dehydrogenase complex, E1 component. Note: this family was classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. Length = 885

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 9/122 (7%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYF------DKASYRTYCLVGDGESAEGSIWEALHFASYYK 104
           G   +G+G+ VA G A+  KY       +     T    GDG    G  +E L+ A+ +K
Sbjct: 192 GFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWK 251

Query: 105 LDNLCVI-FDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ 163
           L  + V+  ++  +G S   +     E+++K   AFG   V VDG DV  + +V+   ++
Sbjct: 252 LPIVFVVENNLWAIGMSHLRATSD-PEIWKKG-PAFGMPGVHVDGMDVLKVREVAKEAIE 309

Query: 164 KA 165
           +A
Sbjct: 310 RA 311

Length = 433

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 17/114 (14%)

Query: 47  FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLD 106
               G G++G GL  A G A      D+      C+ GDG        + L  A  Y L 
Sbjct: 40  LTSTGFGAMGYGLPAAIGAALAAP--DR---PVVCIAGDGGFMMT--GQELATAVRYGLP 92

Query: 107 NLCVIFDINRLGQSEPTSLQHQTEV----------YRKRLDAFGFNAVVVDGHD 150
            + V+F+    G                       +    +A+G   V V+  +
Sbjct: 93  VIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPE 146

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 26  ELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVG 84
           ++K +R+ +  L G+   R +  D  GTG     LS   GMA VG+     +     ++G
Sbjct: 150 KMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMA-VGRDLKGMNNSVVSVIG 207

Query: 85  DGESAEGSIWEALHFASYYKLDNLCVIFD--------INRLGQSEP--------TSLQHQ 128
           DG    G  +EA++ A Y   + + ++ D         N  G ++P        + LQ  
Sbjct: 208 DGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSN 267

Query: 129 TEVYRKR----LDAFGFNAV-VVDGHDVEHLVKV-SSFKLQKAIGCVWIQ 172
             + R+      +  GF+ V  VDGH+++ LV +  + K  K IG V I 
Sbjct: 268 CGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIH 317

Length = 641

>gnl|CDD|192267 pfam09364, XFP_N, XFP N-terminal domain

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 53  GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSI---WEALHFASYYKLDNLC 109
           G LG  LS A G       FD       C+VGDGE+  G +   W +  F +      + 
Sbjct: 140 GELGYALSHAYGAV-----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVL 194

Query: 110 VIFDINRLGQSEPTSLQHQTEV-YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAI 166
            I  +N    S PT L   ++   RK  + +G+    V+G D   + +  +  L  A 
Sbjct: 195 PILHLNGYKISNPTILARISDEELRKFFEGYGYEPYFVEGEDPMSMHRRMAETLDTAF 252

Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779. Length = 379

>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 50/181 (27%)

Query: 29  NLRKIDSDLEGHPTPRLNFIDV-GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE 87
            LR+ D  L G P    +  D  G G     +S A GMA   +           ++GDG 
Sbjct: 91  TLRQKD-GLSGFPKREESEHDWFGVGHSSTSISAALGMA-KARDLKGEDRNVVAVIGDGA 148

Query: 88  SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------------------------ 123
              G  +EAL+ A      NL VI + N +  S                           
Sbjct: 149 LTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGK 208

Query: 124 -----------SLQHQTEVYRKRL-------DAFGFNAV-VVDGHDVEHLVKVSSFKLQK 164
                          + E   K L       +  GFN +  +DGH++E L+      L+ 
Sbjct: 209 KVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPT----LKN 264

Query: 165 A 165
           A
Sbjct: 265 A 265

Length = 627

>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

 Score = 38.1 bits (90), Expect = 0.001
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 25/113 (22%)

Query: 59  LSVAAGMAYVGKYFD---KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
           +S A GMA   K  D       +   ++GDG    G  +EAL+ A   K  +L VI + N
Sbjct: 123 ISAALGMA---KARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLK-SDLIVILNDN 178

Query: 116 RLGQSEP--------TSLQHQT--EVYRKRLDAFGFNAV-VVDGHDVEHLVKV 157
            +  S            L+  T  E         GFN +  +DGHD++ L++ 
Sbjct: 179 EMSISPNVGALSNYLARLRSSTLFE-------ELGFNYIGPIDGHDLDALIET 224

Length = 580

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           G G +G  + + AG+A+  KY +K     + L GDG + +G ++EAL+ A+ + L    V
Sbjct: 136 GHGIVGAQVPLGAGLAFAQKY-NKEENVAFALYGDGAANQGQLFEALNIAALWDLP---V 191

Query: 111 IFDINR----LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
           IF        +G +E  + +     Y KR D      + VDG DV
Sbjct: 192 IFVCENNHYGMGTAEWRAAKSPA--YYKRGDY--VPGLKVDGMDV 232

Length = 362

>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 31/122 (25%)

Query: 43  PRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSI---WEALHF 99
           PR      G G++G GL  A G             +   + GD     G      + L  
Sbjct: 398 PRRFLTSGGLGTMGFGLPAAIGAKLA-----APDRKVVAIAGD-----GGFMMNGQELET 447

Query: 100 ASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL--------------DAFGFNAVV 145
           A  Y L    V+ +    G       Q Q   Y  R               +A+G   + 
Sbjct: 448 AVRYGLPVKIVVLNNGGYGMVR----QWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIR 503

Query: 146 VD 147
           V+
Sbjct: 504 VE 505

Length = 550

>gnl|CDD|238969 cd02011, TPP_PK, Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 53  GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSI---WEALHFASYYKLDNLC 109
           G LG  LS A G       FD       C+VGDGE+  G +   W +  F +      + 
Sbjct: 62  GELGYSLSHAYGAV-----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVL 116

Query: 110 VIFDINRLGQSEPTSLQHQTEVYRKRLDA----FGFNAVVVDGHDVE 152
            I  +N    S PT L     +  + L+A    +G+    V+G D E
Sbjct: 117 PILHLNGYKISNPTIL---ARISHEELEALFRGYGYEPYFVEGDDPE 160

This enzyme requires divalent magnesium ions and TPP for activity. Length = 227

>gnl|CDD|236500 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 10/47 (21%)

Query: 73  DKASYRTYCLVGDGESAE----GSIWEALHFASYYKLDNLCVIFDIN 115
           D +  + +  +GDGE  E    G    A+  A+  KLDNL  IF IN
Sbjct: 221 DTSDQKVWAFLGDGEMDEPESLG----AISLAAREKLDNL--IFVIN 261

Length = 891

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	100.0
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	100.0
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	100.0
PRK12754	663	transketolase; Reviewed	100.0
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	100.0
PRK12753	663	transketolase; Reviewed	100.0
COG0021	663	TktA Transketolase [Carbohydrate transport and met	100.0
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	100.0
PRK05899	624	transketolase; Reviewed	100.0
PLN02790	654	transketolase	100.0
PTZ00089	661	transketolase; Provisional	100.0
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.98
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.98
KOG0523|consensus	632		99.98
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.97
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.97
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.97
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.97
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	99.96
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	99.96
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	99.96
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	99.96
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.95
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	99.95
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	99.95
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	99.95
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.94
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.94
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.94
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.94
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.94
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	99.93
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.93
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.93
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.93
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	99.93
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.92
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.92
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.92
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.92
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.91
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.91
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.91
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.91
PRK06163	202	hypothetical protein; Provisional	99.91
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.91
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.91
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.91
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.91
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.91
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.9
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.9
PRK05261	785	putative phosphoketolase; Provisional	99.89
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.89
PRK12474	518	hypothetical protein; Provisional	99.89
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	99.89
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	99.89
PRK06154	565	hypothetical protein; Provisional	99.89
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.89
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	99.89
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	99.89
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	99.89
PRK07586	514	hypothetical protein; Validated	99.89
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	99.88
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.88
PLN02573	578	pyruvate decarboxylase	99.88
PRK09124	574	pyruvate dehydrogenase; Provisional	99.88
PRK05858	542	hypothetical protein; Provisional	99.88
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.88
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	99.88
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.88
PRK07524	535	hypothetical protein; Provisional	99.87
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	99.87
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	99.87
KOG0225|consensus	394		99.87
PRK06457	549	pyruvate dehydrogenase; Provisional	99.87
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	99.87
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	99.87
PRK11269	591	glyoxylate carboligase; Provisional	99.87
PRK06546	578	pyruvate dehydrogenase; Provisional	99.87
PRK08322	547	acetolactate synthase; Reviewed	99.87
PRK08611	576	pyruvate oxidase; Provisional	99.87
PLN02470	585	acetolactate synthase	99.87
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	99.87
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.87
PRK07064	544	hypothetical protein; Provisional	99.87
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	99.87
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	99.87
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	99.86
PRK08273	597	thiamine pyrophosphate protein; Provisional	99.86
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	99.86
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	99.86
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	99.86
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	99.86
PRK08617	552	acetolactate synthase; Reviewed	99.86
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.86
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	99.86
PRK08266	542	hypothetical protein; Provisional	99.86
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.86
PRK08155	564	acetolactate synthase catalytic subunit; Validated	99.86
PRK08327	569	acetolactate synthase catalytic subunit; Validated	99.86
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	99.86
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	99.85
PRK06112	578	acetolactate synthase catalytic subunit; Validated	99.85
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	99.85
KOG1182|consensus	432		99.85
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	99.85
PRK07092	530	benzoylformate decarboxylase; Reviewed	99.85
PRK08199	557	thiamine pyrophosphate protein; Validated	99.85
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	99.84
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	99.84
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	99.84
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	99.84
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.84
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.83
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.82
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.82
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.81
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.81
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	99.81
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.81
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.79
KOG1185|consensus	571		99.71
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	99.71
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	99.7
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.68
COG3962	617	Acetolactate synthase [Amino acid transport and me	99.68
KOG4166|consensus	675		99.63
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	99.55
KOG1184|consensus	561		99.49
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	99.45
COG3960	592	Glyoxylate carboligase [General function predictio	99.25
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	99.23
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	99.15
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.14
KOG0451|consensus	913		99.04
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	99.0
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	98.6
cd03377	365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	98.55
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	98.38
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	98.3
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	98.29
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	98.11
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.94
KOG0450|consensus	1017		97.67
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	97.06
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.96
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	96.85
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	96.85
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	96.82
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	96.63
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	96.44
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	96.31
PRK07524	535	hypothetical protein; Provisional	95.99
cd01460	266	vWA_midasin VWA_Midasin: Midasin is a member of th	95.88
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	95.86
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	95.86
PRK07064	544	hypothetical protein; Provisional	95.7
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	95.39
PRK08266	542	hypothetical protein; Provisional	95.32
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	95.29
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	95.14
cd07036	167	TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding	95.02
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	94.97
PRK08611	576	pyruvate oxidase; Provisional	94.94
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	94.89
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	94.84
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	94.79
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	94.77
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	94.77
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	94.76
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	94.74
PLN02470	585	acetolactate synthase	94.72
smart00861	168	Transket_pyr Transketolase, pyrimidine binding dom	94.68
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	94.59
PRK06457	549	pyruvate dehydrogenase; Provisional	94.58
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	94.58
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	94.55
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	94.52
PRK08322	547	acetolactate synthase; Reviewed	94.52
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	94.36
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	94.36
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	94.34
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	94.34
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	94.34
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	94.32
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	94.3
PTZ00089	661	transketolase; Provisional	94.28
PRK05899	624	transketolase; Reviewed	94.17
PRK07586	514	hypothetical protein; Validated	94.14
PRK11269	591	glyoxylate carboligase; Provisional	94.13
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	94.09
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	94.09
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	94.03
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	94.03
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	94.02
PRK08155	564	acetolactate synthase catalytic subunit; Validated	94.02
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	94.02
PRK06112	578	acetolactate synthase catalytic subunit; Validated	94.0
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	93.94
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	93.93
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	93.92
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	93.9
PRK08617	552	acetolactate synthase; Reviewed	93.89
PRK12753	663	transketolase; Reviewed	93.84
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	93.8
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	93.8
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	93.64
PLN02683	356	pyruvate dehydrogenase E1 component subunit beta	93.53
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	93.51
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	93.43
PRK08199	557	thiamine pyrophosphate protein; Validated	93.37
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	93.36
PRK12474	518	hypothetical protein; Provisional	93.35
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	93.33
PRK08327	569	acetolactate synthase catalytic subunit; Validated	93.21
PRK05858	542	hypothetical protein; Provisional	93.18
PRK08273	597	thiamine pyrophosphate protein; Provisional	93.17
PRK09212	327	pyruvate dehydrogenase subunit beta; Validated	93.12
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	92.84
PRK09124	574	pyruvate dehydrogenase; Provisional	92.49
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	92.46
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	92.38
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	92.37
PRK07092	530	benzoylformate decarboxylase; Reviewed	92.31
PLN02790	654	transketolase	92.1
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	91.41
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	91.37
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	91.2
COG3958	312	Transketolase, C-terminal subunit [Carbohydrate tr	91.06
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	90.53
PF13519	172	VWA_2: von Willebrand factor type A domain; PDB: 3	90.46
PRK06154	565	hypothetical protein; Provisional	90.44
PRK12754	663	transketolase; Reviewed	90.35
PTZ00182	355	3-methyl-2-oxobutanate dehydrogenase; Provisional	90.22
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	89.83
CHL00144	327	odpB pyruvate dehydrogenase E1 component beta subu	88.97
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	88.55
PLN02573	578	pyruvate decarboxylase	88.41
cd01453	183	vWA_transcription_factor_IIH_type Transcription fa	87.24
KOG4166|consensus	675		86.83
COG0021	663	TktA Transketolase [Carbohydrate transport and met	85.64
PRK06546	578	pyruvate dehydrogenase; Provisional	85.4
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	84.33
PRK13685	326	hypothetical protein; Provisional	83.24
cd01455	191	vWA_F11C1-5a_type Von Willebrand factor type A (vW	82.2

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-38  Score=244.42  Aligned_cols=165  Identities=40%  Similarity=0.585  Sum_probs=154.2

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCc
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE   87 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~   87 (176)
                      .+.|||+|+.+|++|+|+|+.|++.++.|++||.. .+|+++.++|++|+++++|+|+|++.|. ++.+.+|++++|||+
T Consensus        74 a~AlYa~Lae~G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl-~~~~~~VyvilGDGE  152 (243)
T COG3959          74 APALYATLAEKGYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKL-KGSPYRVYVILGDGE  152 (243)
T ss_pred             hHHHHHHHHHcCCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhh-cCCCceEEEEecCcc
Confidence            46799999999999999999999999999999998 4889999999999999999999999996 566789999999999


Q ss_pred             cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCC
Q psy786           88 SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIG  167 (176)
Q Consensus        88 ~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~  167 (176)
                      +++|..|||+.+|++++|.+|+.|+|-|+.++++.+++..+..++.+..++|||++++|||+|.+++.+|++++....++
T Consensus       153 l~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~r  232 (243)
T COG3959         153 LDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGR  232 (243)
T ss_pred             cccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCC
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999998532449


Q ss_pred             cEEEEee
Q psy786          168 CVWIQRG  174 (176)
Q Consensus       168 P~lI~~~  174 (176)
                      |.+|-+.
T Consensus       233 P~~IIa~  239 (243)
T COG3959         233 PTVIIAK  239 (243)
T ss_pred             CeEEEEe
Confidence            9998764

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=100.00  E-value=1.6e-36  Score=244.86  Aligned_cols=165  Identities=44%  Similarity=0.606  Sum_probs=151.3

Q ss_pred             hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCC-CccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc
Q psy786           10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRL-NFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES   88 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~-~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~   88 (176)
                      +.+|++|+..|+++.++|.+||+.++.+++|+++.. |+++.++|+||+++|.|+|+|++.++ ..++++|+|++|||++
T Consensus        61 ~~~ya~l~~~g~~~~~~l~~~~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~-~~~~~~v~~i~GDG~~  139 (255)
T cd02012          61 PALYAVLALAGYLPEEDLKTFRQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKL-LGFDYRVYVLLGDGEL  139 (255)
T ss_pred             HHHHHHHHHcCCCCHHHHHHhcccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHH-hCCCCEEEEEECcccc
Confidence            469999999999999999999999999999999864 58999999999999999999999986 4567899999999999


Q ss_pred             CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCc
Q psy786           89 AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus        89 ~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P  168 (176)
                      ++|.+||++++|++++||++++|+|||+|++++.+......+++++++++|||++++|||+|++++.+++++|.+..++|
T Consensus       140 ~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~~~~P  219 (255)
T cd02012         140 QEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKSKGKP  219 (255)
T ss_pred             cccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999998877666667899999999999999999999999999999997434899


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|++++
T Consensus       220 ~~I~~~t  226 (255)
T cd02012         220 TLIIAKT  226 (255)
T ss_pred             EEEEEEe
Confidence            9999875

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=100.00  E-value=2e-35  Score=245.79  Aligned_cols=165  Identities=39%  Similarity=0.571  Sum_probs=141.9

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~   78 (176)
                      +.+|++|+..|+ ++.|+|.+||+.++.+++||+. .+|+++.++|++|+|++.|+|+|+|.|+++         .-+.+
T Consensus        66 ~~lYa~l~~~G~~~~~~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~  145 (332)
T PF00456_consen   66 PALYAILALRGYDLSEEDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHR  145 (332)
T ss_dssp             HHHHHHHHHTTSSS-HHHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccce
Confidence            569999999999 9999999999999999999995 589999999999999999999999987532         23568


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~a  157 (176)
                      |+|++|||++++|..|||+.+|++++|++|++|+|+|+.++++.+.... ..++.+.+++|||++++| ||+|.++|.+|
T Consensus       146 vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A  224 (332)
T PF00456_consen  146 VYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAA  224 (332)
T ss_dssp             EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHH
T ss_pred             EEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887654 367899999999999998 99999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|....++|++|.++.
T Consensus       225 ~~~a~~~~~kP~~Ii~~T  242 (332)
T PF00456_consen  225 IEEAKASKGKPTVIIART  242 (332)
T ss_dssp             HHHHHHSTSS-EEEEEEE
T ss_pred             HHHHHhcCCCCceeecce
Confidence            999965458999998874

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>PRK12754 transketolase; Reviewed

Probab=100.00  E-value=6.5e-35  Score=260.91  Aligned_cols=165  Identities=27%  Similarity=0.371  Sum_probs=152.4

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||++. +|+++.++|++|++++.|+|+|+|.|+++.         .+.+
T Consensus        69 ~~lYa~l~~~G~~~~~e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~  148 (663)
T PRK12754         69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY  148 (663)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCE
Confidence            569999999998 99999999999999999999985 899999999999999999999999987531         3678


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a  157 (176)
                      |+|++|||++++|.+||++++|+.++||+|++|+|||++++++++.... ..++.+++++|||++++ |||+|++++.+|
T Consensus       149 v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A  227 (663)
T PRK12754        149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRA  227 (663)
T ss_pred             EEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999988776 57899999999999999 899999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|.+..++|++|++++
T Consensus       228 ~~~a~~~~~~Pt~I~~~T  245 (663)
T PRK12754        228 VEEARAVTDKPSLLMCKT  245 (663)
T ss_pred             HHHHHhcCCCCEEEEEEe
Confidence            999865468999999875

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=100.00  E-value=4.9e-34  Score=255.88  Aligned_cols=166  Identities=29%  Similarity=0.391  Sum_probs=151.4

Q ss_pred             ChHHHHHHHHcCCC-CHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCC---------Ccc
Q psy786            9 RTNRSKAWAEAGLF-PVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASY   77 (176)
Q Consensus         9 ~~~~ya~l~~~G~~-~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~   77 (176)
                      .+.||++|+..|++ +.|+|.+||+.++.+++||++ .+|+++.++|++|++++.|+|+|++.|+++.         .+.
T Consensus        64 ~~~lYa~l~~~G~~~~~e~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~  143 (653)
T TIGR00232        64 SMLLYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDH  143 (653)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCC
Confidence            35699999999996 999999999999999999998 4899999999999999999999999987521         367


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVK  156 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~  156 (176)
                      +|+|++|||++++|.+||++++|+.++||+|++|+|||+|++++++.... ..++.+++++|||++++| ||+|++++.+
T Consensus       144 ~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~  222 (653)
T TIGR00232       144 YTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDA  222 (653)
T ss_pred             EEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence            89999999999999999999999999999999999999999999987765 578999999999999999 9999999999


Q ss_pred             HHHHHHhhCCCcEEEEeee
Q psy786          157 VSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       157 al~~a~~~~~~P~lI~~~~  175 (176)
                      |+++|.+..++|++|++++
T Consensus       223 A~~~a~~~~~~P~~I~~~T  241 (653)
T TIGR00232       223 AIEEAKASKDKPTLIEVTT  241 (653)
T ss_pred             HHHHHHhCCCCCEEEEEEe
Confidence            9999853334899999875

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK12753 transketolase; Reviewed

Probab=100.00  E-value=7.3e-34  Score=254.92  Aligned_cols=165  Identities=27%  Similarity=0.339  Sum_probs=151.2

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||+.++.++|||++. +|+++.++|++|++++.|+|+|+|.|+++.         .+.+
T Consensus        69 ~~lYa~l~~~G~~~~~e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~  148 (663)
T PRK12753         69 MLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHY  148 (663)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCE
Confidence            469999999998 99999999999999999999984 899999999999999999999999987531         1578


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a  157 (176)
                      |+|++|||++++|.+||++++|+.++||+|++|+|||++++++++.... ..++.+++++|||++++ |||||++++.+|
T Consensus       149 v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a  227 (663)
T PRK12753        149 TYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEA  227 (663)
T ss_pred             EEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999888765 57899999999999995 999999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|.+..++|++|++++
T Consensus       228 ~~~a~~~~~~P~~I~~~T  245 (663)
T PRK12753        228 ILEAQSVKDKPSLIICRT  245 (663)
T ss_pred             HHHHHHCCCCeEEEEEEE
Confidence            999975557999999875

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-33  Score=246.33  Aligned_cols=166  Identities=34%  Similarity=0.448  Sum_probs=153.3

Q ss_pred             ChHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccc
Q psy786            9 RTNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASY   77 (176)
Q Consensus         9 ~~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~   77 (176)
                      +..||++|++.|+ ++.|+|.+||+++|..+|||+.. +++++.++|++|+|++.|||+|+|.+++..         -|.
T Consensus        70 SmllYsllhl~Gy~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh  149 (663)
T COG0021          70 SMLLYSLLHLTGYDLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDH  149 (663)
T ss_pred             hHHHHHHHHHccCCCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccc
Confidence            3469999999999 99999999999999999999975 899999999999999999999999987632         246


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVK  156 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~  156 (176)
                      .++|++|||++++|..+|+..+|..++|.+||+++|+|..+|++.+...+ .+|.++++++|||+++ .+||+|++++.+
T Consensus       150 ~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~  228 (663)
T COG0021         150 YTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDK  228 (663)
T ss_pred             eEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHH
Confidence            89999999999999999999999999999999999999999999988877 5899999999999999 569999999999


Q ss_pred             HHHHHHhhCCCcEEEEeee
Q psy786          157 VSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       157 al~~a~~~~~~P~lI~~~~  175 (176)
                      |+++|....++|++|+++.
T Consensus       229 Ai~~Ak~~~dkPtlI~~kT  247 (663)
T COG0021         229 AIEEAKASTDKPTLIIVKT  247 (663)
T ss_pred             HHHHHHhcCCCCeEEEEEe
Confidence            9999976578999999874

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=100.00  E-value=3.6e-33  Score=233.96  Aligned_cols=167  Identities=22%  Similarity=0.252  Sum_probs=150.0

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhcCC--CCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKIDS--DLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~~~--~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      .+.+|++|+..|++|.|+|.+||+.++  .+++||++. .| +++.++|++|++++.|+|+|++.|++      .+.+.+
T Consensus        70 s~~lYA~L~l~G~~~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~r  149 (386)
T cd02017          70 SPGIYARAFLEGRLTEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQK  149 (386)
T ss_pred             cHHHHHHHHHcCCCCHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCe
Confidence            356999999999999999999999998  699999874 45 59999999999999999999999863      235688


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEec----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVD----------  147 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vd----------  147 (176)
                      |+|++|||++++|.+||++.+|+.++|++|++|+|+|++++++++... ....++.+.+++|||++++|+          
T Consensus       150 vyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~  229 (386)
T cd02017         150 VWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLA  229 (386)
T ss_pred             EEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhc
Confidence            999999999999999999999999999999999999999999988874 356899999999999999997          


Q ss_pred             -----------------------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786          148 -----------------------------------------------------------GHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       148 -----------------------------------------------------------G~d~~~l~~al~~a~~~~~~P  168 (176)
                                                                                 |||.++|.+|++++.+..++|
T Consensus       230 ~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~~~kP  309 (386)
T cd02017         230 KDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEHKGKP  309 (386)
T ss_pred             cCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhCCCCC
Confidence                                                                       999999999999986445789


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|.+++
T Consensus       310 t~Iia~T  316 (386)
T cd02017         310 TVILAKT  316 (386)
T ss_pred             eEEEEeC
Confidence            9998764

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>PRK05899 transketolase; Reviewed

Probab=100.00  E-value=5.7e-33  Score=248.43  Aligned_cols=164  Identities=36%  Similarity=0.479  Sum_probs=149.2

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.+|++|+.+|+ ++++++.+||++++.+++||++. +|++++++|+||+++|.|+|+|++.++.+.         .+++
T Consensus        73 ~~~Ya~l~~~G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~  152 (624)
T PRK05899         73 MLLYSLLHLAGYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHY  152 (624)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCe
Confidence            568999999999 99999999999999999999984 789999999999999999999999985432         1679


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVS  158 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al  158 (176)
                      |+|++|||++++|.+||++++|++++||++++|+|||+|+++++.... ...++.+++++|||++++|||+|++++.+++
T Consensus       153 v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al  231 (624)
T PRK05899        153 TYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAI  231 (624)
T ss_pred             EEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999876643 3578999999999999999999999999999


Q ss_pred             HHHHhhCCCcEEEEeee
Q psy786          159 SFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       159 ~~a~~~~~~P~lI~~~~  175 (176)
                      ++|. +.++|++|++++
T Consensus       232 ~~a~-~~~~P~vI~v~t  247 (624)
T PRK05899        232 EEAK-ASTKPTLIIAKT  247 (624)
T ss_pred             HHHH-hcCCCEEEEEEe
Confidence            9996 457999999876

>PLN02790 transketolase

Probab=100.00  E-value=1.6e-32  Score=246.26  Aligned_cols=165  Identities=29%  Similarity=0.400  Sum_probs=149.7

Q ss_pred             hHHHHHHHHcCC--CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhc----CCC-----cc
Q psy786           10 TNRSKAWAEAGL--FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYF----DKA-----SY   77 (176)
Q Consensus        10 ~~~ya~l~~~G~--~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~----~~~-----~~   77 (176)
                      +.||++|+..|+  ++.|+|.+||+.++.++|||++ .+|+++.++|++|++++.|+|+|+|.|++    +++     +.
T Consensus        59 ~~lYa~l~~~G~~~~~~~~l~~~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~  138 (654)
T PLN02790         59 MLQYALLHLAGYDSVQMEDLKQFRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDH  138 (654)
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHhccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCC
Confidence            569999999998  7999999999999999999998 47999999999999999999999999853    232     57


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLV  155 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~  155 (176)
                      +|+|++|||++++|.+||++++|+.++||++++|+|||++++++++.... ..++.+++++|||+++.|||  +|.+++.
T Consensus       139 ~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~  217 (654)
T PLN02790        139 YTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIR  217 (654)
T ss_pred             EEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999887654 56888999999999999977  8999999


Q ss_pred             HHHHHHHhhCCCcEEEEeee
Q psy786          156 KVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       156 ~al~~a~~~~~~P~lI~~~~  175 (176)
                      +|+++|.+..++|++|++++
T Consensus       218 ~a~~~a~~~~~~P~lI~~~T  237 (654)
T PLN02790        218 AAIKEAKAVTDKPTLIKVTT  237 (654)
T ss_pred             HHHHHHHhcCCCeEEEEEEE
Confidence            99999964367999999875

>PTZ00089 transketolase; Provisional

Probab=100.00  E-value=1e-32  Score=247.61  Aligned_cols=165  Identities=29%  Similarity=0.400  Sum_probs=150.3

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||+.++.+++||++. +|++++++|++|++++.|+|+|+|.|+++.         .+.+
T Consensus        71 ~~lYa~l~l~G~~~~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~  150 (661)
T PTZ00089         71 ALLYSMLHLTGYDLSMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNY  150 (661)
T ss_pred             HHHHHHHHHcCCCCCHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCE
Confidence            468999999998 99999999999999999999975 789999999999999999999999987532         1678


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCC-CHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGH-DVEHLVK  156 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~-d~~~l~~  156 (176)
                      |+|++|||++++|.+||+++.|+.++||+|++|+|||++++++++.... ..++.+++++|||+++.| ||+ |++++.+
T Consensus       151 v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~  229 (661)
T PTZ00089        151 VYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRK  229 (661)
T ss_pred             EEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999887653 467889999999999999 999 9999999


Q ss_pred             HHHHHHhhCCCcEEEEeee
Q psy786          157 VSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       157 al~~a~~~~~~P~lI~~~~  175 (176)
                      |+++|.+..++|++|++++
T Consensus       230 a~~~a~~~~~~P~~I~~~T  248 (661)
T PTZ00089        230 AIEEAKKSKGKPKLIIVKT  248 (661)
T ss_pred             HHHHHHhcCCCcEEEEEEe
Confidence            9999975457999999875

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.98  E-value=1.2e-31  Score=243.60  Aligned_cols=167  Identities=22%  Similarity=0.277  Sum_probs=150.2

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhcCC------Ccce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYFDK------ASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~~~------~~~~   78 (176)
                      .+.+||+|+..|+++.|+|.+||+.  ++++++||+|+ +| ++++++|+||+|++.|+|+|++.|++..      .+++
T Consensus       141 sp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~r  220 (889)
T TIGR03186       141 APGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRK  220 (889)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCce
Confidence            4679999999999999999999999  78899988886 46 6999999999999999999999886542      3688


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV-----------  146 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v-----------  146 (176)
                      |+|++|||++++|.+||++.+|+++||++|++|+|+|..++++++..... ..++.+.+++|||++++|           
T Consensus       221 Vy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~  300 (889)
T TIGR03186       221 VWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFA  300 (889)
T ss_pred             EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhc
Confidence            99999999999999999999999999999999999999999998876433 578999999999999999           


Q ss_pred             ----------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCc
Q psy786          147 ----------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       147 ----------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P  168 (176)
                                                                                +|||++++++|+++|.+...+|
T Consensus       301 ~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~~~~P  380 (889)
T TIGR03186       301 RDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRHEGRP  380 (889)
T ss_pred             cccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCC
Confidence                                                                      5999999999999997555799


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|.+++
T Consensus       381 TvIla~T  387 (889)
T TIGR03186       381 TVILAKT  387 (889)
T ss_pred             EEEEEEe
Confidence            9998764

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=99.98  E-value=2.1e-31  Score=207.30  Aligned_cols=151  Identities=26%  Similarity=0.362  Sum_probs=132.5

Q ss_pred             HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786           13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG   91 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G   91 (176)
                      |+.+..+|.  +++|++||+.++ +++||++. +|+.+.++|++|+++|.|+|+|++.|+ .+.+++|+|++|||++++|
T Consensus        37 ~~~~~~~g~--~~~l~~~~~~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~-~~~~~~vv~~~GDG~~~eG  112 (195)
T cd02007          37 YPHKILTGR--RDQFHTLRQYGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL-KGKKRKVIAVIGDGALTGG  112 (195)
T ss_pred             HHHHHHHCC--HHHHhhhhcCCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH-hCCCCeEEEEEcccccccC
Confidence            666777785  689999999998 99999875 578888999999999999999999986 3456899999999999999


Q ss_pred             hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786           92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVW  170 (176)
Q Consensus        92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~l  170 (176)
                      ++||++++|+++++| +++|++||+|+++++++      +..++++++||+... |||+|++++.+++++|. +.++|++
T Consensus       113 ~~~Eal~~A~~~~~~-li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~-~~~~P~~  184 (195)
T cd02007         113 MAFEALNNAGYLKSN-MIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK-DLKGPVL  184 (195)
T ss_pred             hHHHHHHHHHHhCCC-EEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH-hCCCCEE
Confidence            999999999999777 67799999999987665      356788899999985 89999999999999986 4679999


Q ss_pred             EEeee
Q psy786          171 IQRGC  175 (176)
Q Consensus       171 I~~~~  175 (176)
                      |++++
T Consensus       185 I~~~T  189 (195)
T cd02007         185 LHVVT  189 (195)
T ss_pred             EEEEE
Confidence            99875

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>KOG0523|consensus

Probab=99.98  E-value=2.3e-31  Score=229.59  Aligned_cols=165  Identities=43%  Similarity=0.678  Sum_probs=152.1

Q ss_pred             hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786           10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA   89 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~   89 (176)
                      +-||+++.+.|.+++|+|.+||++++..++||+++.|+++.++|++|++++.|+|+|++.|+++..+.+|+|++|||+++
T Consensus        75 ~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~  154 (632)
T KOG0523|consen   75 PLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLT  154 (632)
T ss_pred             hHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhc
Confidence            35899999999999999999999999999999999999999999999999999999999999887678999999999999


Q ss_pred             CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE
Q psy786           90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV  169 (176)
Q Consensus        90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~  169 (176)
                      +|..||++++|..++|++|++|+|||..++++.+...+..+-+....++|||++..|||+|.+++.+++.+|.....+|+
T Consensus       155 eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~k~kpt  234 (632)
T KOG0523|consen  155 EGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVKGKPT  234 (632)
T ss_pred             cchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhccCCce
Confidence            99999999999999999999999999999999888776544455599999999999999999999999999975567898


Q ss_pred             EEEee
Q psy786          170 WIQRG  174 (176)
Q Consensus       170 lI~~~  174 (176)
                      .|-.+
T Consensus       235 ~i~~~  239 (632)
T KOG0523|consen  235 AIKAT  239 (632)
T ss_pred             eeeee
Confidence            87654

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.97  E-value=4e-31  Score=238.26  Aligned_cols=167  Identities=23%  Similarity=0.265  Sum_probs=150.0

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      .+.+||+|+..|++++|+|.+||+.  ++++++||+|. +| ++++++|+||+|++.|+|.|++.|++      +..+++
T Consensus       141 sp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~r  220 (885)
T TIGR00759       141 APGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQK  220 (885)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCce
Confidence            3579999999999999999999995  78899999986 46 59999999999999999999999963      345789


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV-----------  146 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v-----------  146 (176)
                      |+|++|||++++|.+||++.+|++++|++|++|+|+|..++++++..... ..+++++++++||++++|           
T Consensus       221 VyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~  300 (885)
T TIGR00759       221 VWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLA  300 (885)
T ss_pred             EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhc
Confidence            99999999999999999999999999999999999999999998876543 578999999999999999           


Q ss_pred             ----------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCc
Q psy786          147 ----------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       147 ----------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P  168 (176)
                                                                                +|||++++.+|+++|.+...+|
T Consensus       301 ~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~~grP  380 (885)
T TIGR00759       301 RDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEHKGQP  380 (885)
T ss_pred             CCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhCCCCC
Confidence                                                                      5999999999999987545689


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|.+++
T Consensus       381 TvIlA~T  387 (885)
T TIGR00759       381 TVILAKT  387 (885)
T ss_pred             EEEEEee
Confidence            9998764

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.97  E-value=2.4e-30  Score=235.85  Aligned_cols=167  Identities=23%  Similarity=0.275  Sum_probs=151.0

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      ++.+||++...|+++.|+|.+||+.  ++++++||+|+ +| ++++++|+||.|++.|+|.|+++||+      +..+++
T Consensus       155 sp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~  234 (896)
T PRK13012        155 APGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRK  234 (896)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCe
Confidence            3679999999999999999999988  58899999987 56 69999999999999999999999965      445689


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV-----------  146 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v-----------  146 (176)
                      |+|++|||++++|.+|||+.+|++++|++|++|+|+|..++++++..... ..++++.++++||++++|           
T Consensus       235 v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~  314 (896)
T PRK13012        235 VWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFA  314 (896)
T ss_pred             EEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhc
Confidence            99999999999999999999999999999999999999999998876543 478999999999999999           


Q ss_pred             ---------------c-------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786          147 ---------------D-------------------------------------------GHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       147 ---------------d-------------------------------------------G~d~~~l~~al~~a~~~~~~P  168 (176)
                                     |                                           |||++++++|+++|.+...+|
T Consensus       315 ~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~~~~P  394 (896)
T PRK13012        315 RDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRHKGQP  394 (896)
T ss_pred             CCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhCCCCC
Confidence                           8                                           999999999999987555689


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|-+++
T Consensus       395 tvIla~T  401 (896)
T PRK13012        395 TVILAKT  401 (896)
T ss_pred             EEEEEEe
Confidence            9998764

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.97  E-value=1.6e-29  Score=229.75  Aligned_cols=167  Identities=23%  Similarity=0.278  Sum_probs=150.6

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      ++.+||+++..|++++|+|.+||+.  +++|++||+|+ +| ++++.+++||.|++.|+|.|+++|++      +..+++
T Consensus       147 sp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~r  226 (891)
T PRK09405        147 SPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQK  226 (891)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCce
Confidence            4679999999999999999999998  78899999986 56 68899999999999999999999965      445789


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEe-----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVV-----------  146 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~v-----------  146 (176)
                      |+|++|||++++|.+||++.+|++++|++|++|+|+|..++++++..... ..++.++++++||++++|           
T Consensus       227 v~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~  306 (891)
T PRK09405        227 VWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLA  306 (891)
T ss_pred             EEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhc
Confidence            99999999999999999999999999999999999999999998876432 578999999999999999           


Q ss_pred             ---------------c-------------------------------------------CCCHHHHHHHHHHHHhhCCCc
Q psy786          147 ---------------D-------------------------------------------GHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       147 ---------------d-------------------------------------------G~d~~~l~~al~~a~~~~~~P  168 (176)
                                     |                                           |||++++.+|+++|.+...+|
T Consensus       307 ~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~~~~P  386 (891)
T PRK09405        307 KDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEHKGQP  386 (891)
T ss_pred             cCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhCCCCC
Confidence                           4                                           999999999999997555789


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|.+++
T Consensus       387 tvIia~T  393 (891)
T PRK09405        387 TVILAKT  393 (891)
T ss_pred             EEEEEec
Confidence            9998764

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.97  E-value=1.5e-29  Score=224.71  Aligned_cols=159  Identities=24%  Similarity=0.312  Sum_probs=139.6

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE   90 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~   90 (176)
                      -|+.+..+|+  .|+|.+||+.++ ++|||++. .|++++++|++|+++|.|+|+|++.++.++++++|+|++|||++++
T Consensus        78 ~y~~~~~~g~--~~~l~~~~~~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~e  154 (580)
T PRK05444         78 AYPHKILTGR--RDRFDTLRQKGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTG  154 (580)
T ss_pred             HHHHHHHhCc--HHHhcCcccCCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEccccccc
Confidence            4999999996  689999999998 89999974 6899999999999999999999999864356789999999999999


Q ss_pred             chHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---cccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCC
Q psy786           91 GSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---HQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAI  166 (176)
Q Consensus        91 G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~  166 (176)
                      |++||++++|+++++| +++|+|||+|++++++...   ....++.+++++|||+++ .|||+|++++.++++++. ..+
T Consensus       155 G~~~Eal~~A~~~~~n-li~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~-~~~  232 (580)
T PRK05444        155 GMAFEALNNAGDLKSD-LIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK-DLK  232 (580)
T ss_pred             CHHHHHHHHHHhhCCC-EEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH-hCC
Confidence            9999999999999977 6899999999988776433   223566789999999999 589999999999999986 457


Q ss_pred             CcEEEEeee
Q psy786          167 GCVWIQRGC  175 (176)
Q Consensus       167 ~P~lI~~~~  175 (176)
                      +|++|++++
T Consensus       233 ~P~lI~~~T  241 (580)
T PRK05444        233 GPVLLHVVT  241 (580)
T ss_pred             CCEEEEEEe
Confidence            999999875

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=99.96  E-value=9.3e-29  Score=203.30  Aligned_cols=169  Identities=26%  Similarity=0.329  Sum_probs=135.4

Q ss_pred             CCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786            5 EIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus         5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      |..|... -++.++++|+.+.+.+..+  |..|    .+.+.|.....+++...+|+||+++|+|+|+|++.++ .++++
T Consensus        49 D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~-~~~~~  127 (293)
T cd02000          49 DWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKY-RGEDR  127 (293)
T ss_pred             CEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHH-hCCCC
Confidence            4444444 5778888998766666555  2222    2234555433456777899999999999999999985 45678


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV  157 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a  157 (176)
                      +|||++|||++++|.++|+|++|++++|| +++|++||+|+++++.+...+.+++.+++++||+++++|||+|++++.++
T Consensus       128 ~vv~~~GDGa~~~g~~~E~l~~A~~~~lP-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a  206 (293)
T cd02000         128 VAVCFFGDGATNEGDFHEALNFAALWKLP-VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEA  206 (293)
T ss_pred             EEEEEeCCCccccchHHHHHHHHHhhCCC-EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHH
Confidence            99999999999999999999999999999 55666677899988776666678999999999999999999999999999


Q ss_pred             HHHHHhh---CCCcEEEEeee
Q psy786          158 SSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~---~~~P~lI~~~~  175 (176)
                      +++|++.   .++|+|||+.|
T Consensus       207 ~~~A~~~ar~~~~P~lIev~~  227 (293)
T cd02000         207 AKEAVERARAGGGPTLIEAVT  227 (293)
T ss_pred             HHHHHHHHHccCCCEEEEEEE
Confidence            9998753   46899999875

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=99.96  E-value=3e-29  Score=208.60  Aligned_cols=170  Identities=25%  Similarity=0.324  Sum_probs=138.1

Q ss_pred             CCCCChH-HHHHHHHcCCCCHHHHhhh--hhc----CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786            5 EIPFRTN-RSKAWAEAGLFPVSELKNL--RKI----DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus         5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~----~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      |.-|++. -++.++.+|+-+.+.|..+  |..    |...+.|......++...++++|.++|.|+|+|+|.|+++..++
T Consensus        81 D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~  160 (358)
T COG1071          81 DWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDG  160 (358)
T ss_pred             CEeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCc
Confidence            5555555 5778888897666655554  223    34455554322334556789999999999999999998765667


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV  157 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a  157 (176)
                      +++|++|||+..+|.++|+||+|+.|||| +||+++||+|+|+.+...+.....++..+.+||+++++|||+|+.+++++
T Consensus       161 Va~~~~GDGat~qG~FhEalN~A~v~klP-vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~  239 (358)
T COG1071         161 VAVAFFGDGATNQGDFHEALNFAAVWKLP-VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEA  239 (358)
T ss_pred             EEEEEecCCccccchHHHHHHHHHHhcCC-EEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHH
Confidence            99999999999999999999999999999 78999999999997766566556777799999999999999999999999


Q ss_pred             HHHHHhhC---CCcEEEEeee
Q psy786          158 SSFKLQKA---IGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~---~~P~lI~~~~  175 (176)
                      .++|++++   ++|+|||..+
T Consensus       240 ~~~A~e~AR~g~GPtLIE~~t  260 (358)
T COG1071         240 AKEAVERARAGEGPTLIEAVT  260 (358)
T ss_pred             HHHHHHHHHcCCCCEEEEEEE
Confidence            99998754   4899999864

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=99.96  E-value=3e-28  Score=202.08  Aligned_cols=171  Identities=20%  Similarity=0.328  Sum_probs=134.6

Q ss_pred             CCCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCC
Q psy786            3 TNEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA   75 (176)
Q Consensus         3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~   75 (176)
                      .+|.-|.+. =++.++++|+.+.+.+..+  |..|    ...+.|....-.++....++||+++|.|+|+|++.++ .++
T Consensus        53 ~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~-~~~  131 (315)
T TIGR03182        53 PDDYVITSYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKY-RGN  131 (315)
T ss_pred             CCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHH-hCC
Confidence            345666666 5788889997666555544  2212    1123344322234556789999999999999999985 456


Q ss_pred             cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHH
Q psy786           76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLV  155 (176)
Q Consensus        76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~  155 (176)
                      +++|+|++|||++++|.++|+|++|+.+++| +++|+.||+|+++++.+.....+++++++++||+++++|||+|+.++.
T Consensus       132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lP-vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~  210 (315)
T TIGR03182       132 DNVTACFFGDGAANQGQFYESFNMAALWKLP-VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVR  210 (315)
T ss_pred             CCEEEEEeCCCcccccHHHHHHHHhhccCcC-EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHH
Confidence            7899999999999999999999999999999 555566678999988776666688999999999999999999999999


Q ss_pred             HHHHHHHhh---CCCcEEEEeee
Q psy786          156 KVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       156 ~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +++++|+++   .++|+|||+.|
T Consensus       211 ~a~~~A~~~ar~~~gP~lIe~~t  233 (315)
T TIGR03182       211 EAAKEAVERARSGKGPILLEMKT  233 (315)
T ss_pred             HHHHHHHHHHHccCCCEEEEEeC
Confidence            999988863   36899999976

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=99.96  E-value=3.7e-28  Score=203.28  Aligned_cols=172  Identities=21%  Similarity=0.291  Sum_probs=134.7

Q ss_pred             CCCCCCChH-HHHHHHHcCCCCHHHHhhhh--hcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC--
Q psy786            3 TNEIPFRTN-RSKAWAEAGLFPVSELKNLR--KID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD--   73 (176)
Q Consensus         3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~r--~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~--   73 (176)
                      .+|.-|.+. -++.++.+|+.+.+.+..+.  ..|    ...+.|.......+-..+++||+++|.|+|+|++.|+.+  
T Consensus        71 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~  150 (341)
T CHL00149         71 ETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQV  150 (341)
T ss_pred             CCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccc
Confidence            345566665 67889999987777666552  112    223445432222333678999999999999999987644  


Q ss_pred             ----CCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCC
Q psy786           74 ----KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGH  149 (176)
Q Consensus        74 ----~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~  149 (176)
                          .++++|+|++|||++++|.++|+|++|++|+|| +++|+.||+|+++++.+.....+++.+++++||+++++|||+
T Consensus       151 ~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LP-vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~  229 (341)
T CHL00149        151 LKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLP-IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGM  229 (341)
T ss_pred             cccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCC-EEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCC
Confidence                257899999999999999999999999999999 677778899988877665555689999999999999999999


Q ss_pred             CHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          150 DVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       150 d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      |+.++++++++|+++   .++|+|||+.|
T Consensus       230 d~~av~~a~~~A~~~ar~~~gP~lIev~t  258 (341)
T CHL00149        230 DVLAVREVAKEAVERARQGDGPTLIEALT  258 (341)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            999888777777653   46899999975

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.95  E-value=1.8e-27  Score=212.54  Aligned_cols=165  Identities=26%  Similarity=0.369  Sum_probs=138.2

Q ss_pred             CCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCcccc-CCcccchhHHHHHHHHHhchhcCCCcceEEE
Q psy786            5 EIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDV-GTGSLGQGLSVAAGMAYVGKYFDKASYRTYC   81 (176)
Q Consensus         5 ~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~-~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~   81 (176)
                      .+-|+.+  -|+.+..+|+  .|+|.+||+.++ ++|||++..++++. ++|++|++++.|+|+|+|.++ .+.+.+|+|
T Consensus        63 r~i~s~GH~~Y~~~~~~G~--~~~l~~~r~~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~-~~~~~~v~~  138 (617)
T TIGR00204        63 QFIWDVGHQAYPHKLLTGR--REKFSTLRQKKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEK-KGADRKTVC  138 (617)
T ss_pred             cEEEecchHHHHHHHHhCc--HHHhcchhhcCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHh-hCCCCEEEE
Confidence            3444444  5999999997  589999999997 99999987777775 899999999999999999986 456679999


Q ss_pred             EECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc--------------------------c-HH-HH
Q psy786           82 LVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ--------------------------T-EV-YR  133 (176)
Q Consensus        82 ~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~--------------------------~-~~-~~  133 (176)
                      ++|||++++|.+||+++.|+.++||+ ++|+|||++++++++.....                          . .+ +.
T Consensus       139 ~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~  217 (617)
T TIGR00204       139 VIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA  217 (617)
T ss_pred             EECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence            99999999999999999999999996 89999999999987642210                          0 01 22


Q ss_pred             H--------------HHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          134 K--------------RLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       134 ~--------------~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      +              ++++|||+++ .|||||.+++.++++++. ..++|++|++++
T Consensus       218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak-~~~~P~~i~~~T  273 (617)
T TIGR00204       218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAK-KLKGPVFLHIQT  273 (617)
T ss_pred             HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHh-cCCCCEEEEEEe
Confidence            2              3889999999 899999999999999874 457899999875

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=99.95  E-value=4e-27  Score=197.21  Aligned_cols=169  Identities=24%  Similarity=0.273  Sum_probs=131.2

Q ss_pred             CCCCCCCChH-HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786            2 KTNEIPFRTN-RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTY   80 (176)
Q Consensus         2 ~~~~~~~~~~-~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv   80 (176)
                      +.+|..|.+. =++..+..|+.+.+.+..+.....+.  +..+. .++...+++||+++|.|+|+|++.|+ .+++++|+
T Consensus        73 ~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--~~~~~-~~~~g~~~~vG~~lp~AiGaAla~k~-~~~~~~vv  148 (341)
T TIGR03181        73 RKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERGS--WDPEG-VNILPPNIPIGTQYLHAAGVAYALKL-RGEDNVAV  148 (341)
T ss_pred             CCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcCC--CCchh-cCccCCCchHhcchhHHHhHHHHHHh-hCCCCEEE
Confidence            3345556665 57888899987776665542222111  11222 24445789999999999999999985 56788999


Q ss_pred             EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHH
Q psy786           81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF  160 (176)
Q Consensus        81 ~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~  160 (176)
                      |++|||++++|.++|+|++|++++|| +++|+.||+|+++++.......+++.+++++||+++++|||+|..++++++++
T Consensus       149 ~~~GDGa~~~g~~~EaL~tA~~~~LP-vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~  227 (341)
T TIGR03181       149 TYFGDGGTSEGDFYEALNFAGVFKAP-VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKE  227 (341)
T ss_pred             EEecCCccccChHHHHHHHHhccCCC-EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHH
Confidence            99999999999899999999999999 55666678899887665555567899999999999999999999888887777


Q ss_pred             HHhh---CCCcEEEEeee
Q psy786          161 KLQK---AIGCVWIQRGC  175 (176)
Q Consensus       161 a~~~---~~~P~lI~~~~  175 (176)
                      |+++   .++|+|||+.+
T Consensus       228 A~~~a~~~~gP~lIev~t  245 (341)
T TIGR03181       228 AVERARSGGGPTLIEAVT  245 (341)
T ss_pred             HHHHHHcCCCCEEEEEEe
Confidence            7653   36899999975

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=99.95  E-value=1e-26  Score=199.29  Aligned_cols=171  Identities=21%  Similarity=0.282  Sum_probs=130.5

Q ss_pred             CCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC---
Q psy786            4 NEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD---   73 (176)
Q Consensus         4 ~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---   73 (176)
                      +|.-|.+. =++..+++|+.+++.|..+  +..|    .+.+.|....-.++...+++||+++|.|+|+|++.|+.+   
T Consensus       138 ~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~  217 (433)
T PLN02374        138 DDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVL  217 (433)
T ss_pred             CCEEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccc
Confidence            34444433 3566678897666666555  2112    222334332222455678999999999999999988643   


Q ss_pred             ---CCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCC
Q psy786           74 ---KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD  150 (176)
Q Consensus        74 ---~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d  150 (176)
                         .++++|+|++|||++++|.++|+|++|+.|+|| +++|+.||+|+++.+.......+++++++++||+++++|||+|
T Consensus       218 ~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LP-vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D  296 (433)
T PLN02374        218 KEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMD  296 (433)
T ss_pred             cccCCCCEEEEEECCCccccChHHHHHHHHHHhCCC-EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCC
Confidence               257899999999999999999999999999999 7778888999888766555556789999999999999999999


Q ss_pred             HHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          151 VEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       151 ~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +.++++++++|+++   .++|+|||+.|
T Consensus       297 ~~av~~a~~~A~~~Ar~g~gP~LIe~~t  324 (433)
T PLN02374        297 VLKVREVAKEAIERARRGEGPTLVECET  324 (433)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence            99999877777653   36899999865

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=99.95  E-value=1.4e-27  Score=196.87  Aligned_cols=161  Identities=24%  Similarity=0.301  Sum_probs=126.8

Q ss_pred             HHHHHHcCCCCHHHHhhhhhcC----CCCC-CCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCc
Q psy786           13 SKAWAEAGLFPVSELKNLRKID----SDLE-GHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE   87 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~~----~~l~-~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~   87 (176)
                      ++.++..|.-+.+.+..+....    .+.. .|...+...+...++++|.++|.|+|.|++.|. .+.+..++|++|||+
T Consensus        56 ~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~-~~~~~v~v~~~GDga  134 (300)
T PF00676_consen   56 HGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNILGASSPVGAQVPIAAGVALAIKY-RGKDGVVVCFFGDGA  134 (300)
T ss_dssp             HHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHH-TTSSEEEEEEEETGG
T ss_pred             hhhhhhccccccchhHHhcCcccCCCCCccccccccccceeeeccccccccCccccchhHhhhh-cCCceeEEEEecCcc
Confidence            4556778866555555552221    1111 221111223555788999999999999999996 556789999999999


Q ss_pred             cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---
Q psy786           88 SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---  164 (176)
Q Consensus        88 ~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---  164 (176)
                      ..+|.++|+|++|+.|+|| ++|||+||+|+++++...+....++.++|++||+++++|||+|+.++.+++++|+++   
T Consensus       135 ~~qG~~~EalN~A~~~~lP-vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~  213 (300)
T PF00676_consen  135 TSQGDFHEALNLAALWKLP-VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARA  213 (300)
T ss_dssp             GGSHHHHHHHHHHHHTTTS-EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHT
T ss_pred             cccCccHHHHHHHhhccCC-eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999 688899999999999888777778899999999999999999999999999999874   


Q ss_pred             CCCcEEEEeee
Q psy786          165 AIGCVWIQRGC  175 (176)
Q Consensus       165 ~~~P~lI~~~~  175 (176)
                      -++|+|||+.|
T Consensus       214 g~gP~lie~~t  224 (300)
T PF00676_consen  214 GKGPVLIEAVT  224 (300)
T ss_dssp             TT--EEEEEEE
T ss_pred             CCCCEEEEEee
Confidence            36999999875

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.94  E-value=2.8e-26  Score=204.10  Aligned_cols=159  Identities=26%  Similarity=0.359  Sum_probs=132.2

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE   90 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~   90 (176)
                      -|+.+..+|+.  ++|.+||+.++ ++|||++. .|+..+++|++|+++++|+|+|+|.+. .+.+.+|+|++|||++++
T Consensus       138 aya~~~ltgr~--~~l~t~r~~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l-~g~~~~v~~viGDGel~e  213 (641)
T PLN02234        138 SYPHKILTGRR--GKMKTIRQTNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDL-KGMNNSVVSVIGDGAMTA  213 (641)
T ss_pred             HHHHHHHHhhh--hhhcccccCCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHh-CCCCCeEEEEEccchhhh
Confidence            58888888874  57889999997 99999975 678999999999999999999999986 455678999999999999


Q ss_pred             chHHHHHHHhhhcCCCcEEEEEecCCCc------cccCccccccc---------------HHHHHHHhhcCceEE-EecC
Q psy786           91 GSIWEALHFASYYKLDNLCVIFDINRLG------QSEPTSLQHQT---------------EVYRKRLDAFGFNAV-VVDG  148 (176)
Q Consensus        91 G~~~eal~~a~~~~lp~liiV~~nn~~~------~~~~~~~~~~~---------------~~~~~~a~a~G~~~~-~vdG  148 (176)
                      |+.|||++.|+..+ +++++|+|+|++.      ..+.++.....               .+...++++|||+++ .|||
T Consensus       214 G~~wEAl~~a~~~~-~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDG  292 (641)
T PLN02234        214 GQAYEAMNNAGYLH-SNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDG  292 (641)
T ss_pred             HHHHHHHHHHhhhC-CCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECC
Confidence            99999999999655 7799999999984      33333221111               245789999999999 9999


Q ss_pred             CCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786          149 HDVEHLVKVSSFKLQKA-IGCVWIQRGC  175 (176)
Q Consensus       149 ~d~~~l~~al~~a~~~~-~~P~lI~~~~  175 (176)
                      ||.++|.++++++.+.. .+|++|++++
T Consensus       293 Hd~~~l~~al~~~k~~~~~~P~vI~~~T  320 (641)
T PLN02234        293 HNIDDLVSILETLKSTKTIGPVLIHVVT  320 (641)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence            99999999999875332 5899999875

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=99.94  E-value=4.2e-26  Score=179.95  Aligned_cols=149  Identities=22%  Similarity=0.374  Sum_probs=127.8

Q ss_pred             hHHHHHHHHcC----CCCHHH-----Hh-hhhhcC--CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786           10 TNRSKAWAEAG----LFPVSE-----LK-NLRKID--SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus        10 ~~~ya~l~~~G----~~~~e~-----l~-~~r~~~--~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      +.+|+.++..|    ++|...     |. .||+++  .++++|+.+.+|++...+|++|++++.|+|+++..     ++.
T Consensus         7 ~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~~tpGi~~~~G~LG~gLs~A~G~a~d~-----~d~   81 (227)
T cd02011           7 PAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAVFDN-----PDL   81 (227)
T ss_pred             HHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcccCCCeeecccchhhHHHHHHHhhhcC-----CCc
Confidence            56999999999    333332     43 567653  22999999889999999999999999999998744     478


Q ss_pred             eEEEEECCCccCCchH---HHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHHH
Q psy786           78 RTYCLVGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEH  153 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~---~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~  153 (176)
                      +|+|++|||++++|.+   |++..++..+++.+|+.|++||+|++++++... .+..++.+++++|||++++|||+|+++
T Consensus        82 iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~a  161 (227)
T cd02011          82 IVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPET  161 (227)
T ss_pred             EEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHH
Confidence            9999999999999985   888889999999999999999999999998855 456789999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy786          154 LVKVSSFKLQ  163 (176)
Q Consensus       154 l~~al~~a~~  163 (176)
                      +.+++++|++
T Consensus       162 v~~~~a~a~~  171 (227)
T cd02011         162 MHQAMAATLD  171 (227)
T ss_pred             HHHHHHHHHH
Confidence            9988887765

This enzyme requires divalent magnesium ions and TPP for activity.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.94  E-value=1.4e-26  Score=176.49  Aligned_cols=116  Identities=22%  Similarity=0.111  Sum_probs=101.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---  126 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---  126 (176)
                      ...|+||+++|.|+|++++.+     +++|+|++|||+|++  ..++|+||++++||++++|+|||+|++....+..   
T Consensus        45 ~~~g~mG~~lp~AiGa~la~~-----~~~vv~i~GDG~f~~--~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~  117 (172)
T cd02004          45 GTFGTLGVGLGYAIAAALARP-----DKRVVLVEGDGAFGF--SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYG  117 (172)
T ss_pred             CCCCcccchHHHHHHHHHhCC-----CCeEEEEEcchhhcC--CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhcc
Confidence            467999999999999999986     789999999999997  4577999999999999999999999987643321   


Q ss_pred             --------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 --------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 --------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                              ...+|+.+++++||+++.+|+  +++++.+++++++ ..++|+|||+.+
T Consensus       118 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i  171 (172)
T cd02004         118 LGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL-ASGKPALINVII  171 (172)
T ss_pred             CCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-HcCCCEEEEEEc
Confidence                    245799999999999999997  7999999999997 468999999986

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.94  E-value=1e-26  Score=181.05  Aligned_cols=117  Identities=19%  Similarity=0.225  Sum_probs=100.9

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .+.|+||+++|+|+|++++.+     +++|||++|||+|+|  ..++|.||+++++|++++|+||++|++....+.    
T Consensus        50 ~~~g~mG~~lpaaiGa~la~p-----~r~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~  122 (196)
T cd02013          50 LSFGNCGYALPAIIGAKAAAP-----DRPVVAIAGDGAWGM--SMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYN  122 (196)
T ss_pred             CCCcccccHHHHHHHHHHhCC-----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcC
Confidence            467999999999999999876     789999999999997  356799999999999999999999998653211    


Q ss_pred             ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh--hCCCcEEEEeee
Q psy786          126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ--KAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~~  175 (176)
                            ....+||+++|++||+++++|+  ++++|.+++++|++  +.++|+|||+++
T Consensus       123 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v  178 (196)
T cd02013         123 NRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVC  178 (196)
T ss_pred             CCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEe
Confidence                  2235799999999999999997  89999999999984  168999999976

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.94  E-value=8.5e-26  Score=202.39  Aligned_cols=159  Identities=23%  Similarity=0.318  Sum_probs=123.6

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE   90 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~   90 (176)
                      -|+.+...|+  +|+|.+||+.++ ++|||++. .++-....++-+.+++.|+|+|++.+. .+++++|+|++|||++++
T Consensus        80 ~Y~~~~l~g~--~~~l~~~r~~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~-~~~~~~v~~v~GDG~~~e  155 (641)
T PRK12571         80 CYPHKILTGR--RDRFRTLRQKGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARAL-GQPDGDVVAVIGDGSLTA  155 (641)
T ss_pred             HHHHHHHhCC--HHHHhhhhhCCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHH-hCCCCeEEEEEeCchhhc
Confidence            4999999996  799999999997 99998863 343122233334445666666666664 345789999999999999


Q ss_pred             chHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-------cccccHHH-------------------------------
Q psy786           91 GSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-------LQHQTEVY-------------------------------  132 (176)
Q Consensus        91 G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-------~~~~~~~~-------------------------------  132 (176)
                      |++||++++|+++++| +++|+|||++++++++.       .......|                               
T Consensus       156 G~~~Eal~~a~~~~~~-li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (641)
T PRK12571        156 GMAYEALNNAGAADRR-LIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTG  234 (641)
T ss_pred             chHHHHHHHHHHhCCC-EEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhh
Confidence            9999999999999997 67899999999988764       11111111                               


Q ss_pred             ----HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          133 ----RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       133 ----~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          ..++++|||+++ .|||||.++|.+|++++.+..++|++|++++
T Consensus       235 ~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~~~~P~~I~~~T  282 (641)
T PRK12571        235 MIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARARADGPVLVHVVT  282 (641)
T ss_pred             ccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence                478999999999 7999999999999999853357899999864

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=99.93  E-value=1.5e-25  Score=188.60  Aligned_cols=170  Identities=21%  Similarity=0.292  Sum_probs=132.6

Q ss_pred             CCCCCCCChH-HHHHHHHcCCCCHHHHhhh--hhcC----CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCC
Q psy786            2 KTNEIPFRTN-RSKAWAEAGLFPVSELKNL--RKID----SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK   74 (176)
Q Consensus         2 ~~~~~~~~~~-~ya~l~~~G~~~~e~l~~~--r~~~----~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~   74 (176)
                      +.+|.-|.+. -++.++++|+.+.+.+..+  |..|    .+.+.|....-.++...++++|.++|+|+|+|+|.|+ .+
T Consensus        80 ~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~-~~  158 (362)
T PLN02269         80 TKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKY-NK  158 (362)
T ss_pred             CCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHH-hC
Confidence            3455566666 6788999998766655544  2222    1223443222223446789999999999999999996 44


Q ss_pred             CcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786           75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL  154 (176)
Q Consensus        75 ~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l  154 (176)
                      .+++++|++|||++++|.+||++++|+.|+|| +++|++||+|+++++.+......++.+  +++++++++|||+|+.++
T Consensus       159 ~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lP-vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~p~~~VDG~D~~av  235 (362)
T PLN02269        159 EENVAFALYGDGAANQGQLFEALNIAALWDLP-VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYVPGLKVDGMDVLAV  235 (362)
T ss_pred             CCCeEEEEECCCCcccCHHHHHHHHhhccCcC-EEEEEeCCCEeccCchhhhccchHHHH--hhcCCCeEEECCCCHHHH
Confidence            56799999999999999999999999999999 888999999999988766665566664  557899999999999999


Q ss_pred             HHHHHHHHhh--CCCcEEEEeee
Q psy786          155 VKVSSFKLQK--AIGCVWIQRGC  175 (176)
Q Consensus       155 ~~al~~a~~~--~~~P~lI~~~~  175 (176)
                      .+++++|+++  .++|+|||..|
T Consensus       236 ~~a~~~A~~~aR~~gP~lIe~~t  258 (362)
T PLN02269        236 KQACKFAKEHALSNGPIVLEMDT  258 (362)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEec
Confidence            9999998752  37899999875

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.93  E-value=3e-26  Score=179.05  Aligned_cols=117  Identities=18%  Similarity=0.111  Sum_probs=100.3

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ...|+||+++|.|+|++++.+     +++|||++|||+|+|.  .++|+||++++||+++||+||++|++....+.    
T Consensus        54 ~~~GsmG~~lpaaiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~  126 (202)
T cd02006          54 GQAGPLGWTVPAALGVAAADP-----DRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDM  126 (202)
T ss_pred             CCccchhhhhHHHHhHHhhCC-----CCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcC
Confidence            367999999999999999986     7899999999999974  46799999999999999999999997543211    


Q ss_pred             ---------c-------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786          126 ---------Q-------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC  175 (176)
Q Consensus       126 ---------~-------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~  175 (176)
                               .       .+.+||+++|++||+++++|+  ++++|.+++++|++   ..++|+|||+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i  193 (202)
T cd02006         127 DYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL  193 (202)
T ss_pred             ccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence                     0       014799999999999999996  89999999999985   258999999986

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.93  E-value=1.4e-25  Score=175.68  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .+.|+||+++|.|+|++++.+     +++|||++|||+|+++  .++|.||+++++|++++|+||++|++....+.    
T Consensus        45 ~~~gsmG~~lpaAiGa~la~p-----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~  117 (205)
T cd02003          45 YGYSCMGYEIAAGLGAKLAKP-----DREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGS  117 (205)
T ss_pred             CCcchhhhHHHHHHHHHHhCC-----CCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcC
Confidence            467999999999999999876     7899999999999974  45799999999999999999999987542110    


Q ss_pred             -------------------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -------------------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -------------------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                         ....+||.++|++||+++++|+  +++++.+++++|+ +.++|+|||+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIeV~v  183 (205)
T cd02003         118 GSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK-ASDRTTVIVIKT  183 (205)
T ss_pred             ccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                               0124799999999999999996  8999999999997 578999999975

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.93  E-value=2.1e-25  Score=171.16  Aligned_cols=118  Identities=21%  Similarity=0.237  Sum_probs=101.5

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      ...+.|+||+++|.|+|++++.+     +++||+++|||+|++  ..++|.|++++++|++++|+||++|++....+   
T Consensus        43 ~~~~~g~mG~~lp~aiGa~la~~-----~~~vv~i~GDG~f~m--~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~  115 (177)
T cd02010          43 ISNGLATMGVALPGAIGAKLVYP-----DRKVVAVSGDGGFMM--NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKE  115 (177)
T ss_pred             eCCCChhhhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHh--HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHh
Confidence            34578999999999999999976     789999999999996  45679999999999999999999999864221   


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .....+||++++++||+++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       116 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~  169 (177)
T cd02010         116 YGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERAL-AADGVHVIDCPV  169 (177)
T ss_pred             cCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  11234699999999999999996  8999999999997 468999999875

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=99.93  E-value=7.2e-25  Score=176.75  Aligned_cols=170  Identities=15%  Similarity=0.126  Sum_probs=134.0

Q ss_pred             CCCChHHHHHHHHcCCCCHHHHhhhhhcC---------CCCCCCCCC-C---C-------CccccCCcccchhHHHHHHH
Q psy786            6 IPFRTNRSKAWAEAGLFPVSELKNLRKID---------SDLEGHPTP-R---L-------NFIDVGTGSLGQGLSVAAGM   65 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~---------~~l~~~~~~-~---~-------~~~~~~~g~~G~~l~~AvG~   65 (176)
                      ||||.-+....-.+|+-+.+.+..|....         .....|... .   .       ..+-...+.+|...|+|+|+
T Consensus        46 m~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~  125 (265)
T cd02016          46 MAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGK  125 (265)
T ss_pred             cCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhH
Confidence            67888877777678876666666664321         111122111 0   1       12334567899999999999


Q ss_pred             HHhchhcCC----CcceEEEEECCCcc-CCchHHHHHHHhhhcCCCc--EEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           66 AYVGKYFDK----ASYRTYCLVGDGES-AEGSIWEALHFASYYKLDN--LCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        66 A~a~~~~~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~--liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      |+|.++.+.    .+..++|++|||++ .+|.++|+|++|..+++|+  +++|+.||+|+++++.+...+..++.+++++
T Consensus       126 A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~  205 (265)
T cd02016         126 TRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKM  205 (265)
T ss_pred             HHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHee
Confidence            999997542    36789999999996 6999999999999999984  7788899999999988877777788999999


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEeee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRGC  175 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~~  175 (176)
                      ||+++++|||+|++++.++.++|+++.   ++|+|||+.|
T Consensus       206 ~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~t  245 (265)
T cd02016         206 IGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVC  245 (265)
T ss_pred             cCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence            999999999999999999999998742   5899999976

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.92  E-value=1.2e-24  Score=194.97  Aligned_cols=159  Identities=21%  Similarity=0.322  Sum_probs=129.1

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAE   90 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~   90 (176)
                      -|+.+..+|+  .++|.+||+.++ ++|||++. .|+..+++|++|++++.|+|+|+|.++ ++.+++|+|++|||++++
T Consensus       105 ay~~~~l~gr--~~~l~~~r~~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~-~~~~~~v~~viGDG~~~~  180 (677)
T PLN02582        105 SYPHKILTGR--RDKMHTMRQTNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDL-KGKKNNVVAVIGDGAMTA  180 (677)
T ss_pred             HHHHHHHHcc--HHHhcccccCCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHh-cCCCCEEEEEecccccch
Confidence            4999999997  578999999997 99999975 578888999999999999999999885 556779999999999999


Q ss_pred             chHHHHHHHhhhcCCCcEEEEEecCCC-cc--------ccCcccc-------c-------------------c--cHHH-
Q psy786           91 GSIWEALHFASYYKLDNLCVIFDINRL-GQ--------SEPTSLQ-------H-------------------Q--TEVY-  132 (176)
Q Consensus        91 G~~~eal~~a~~~~lp~liiV~~nn~~-~~--------~~~~~~~-------~-------------------~--~~~~-  132 (176)
                      |++||+++.|+.+++| +++|+|||+. ++        +......       .                   +  ..++ 
T Consensus       181 G~~~Ealn~a~~~~~~-li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (677)
T PLN02582        181 GQAYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELA  259 (677)
T ss_pred             hhHHHHHHHHHhhCcC-EEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHH
Confidence            9999999999999997 8888999987 33        2111000       0                   0  0011 


Q ss_pred             H---------------HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786          133 R---------------KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKA-IGCVWIQRGC  175 (176)
Q Consensus       133 ~---------------~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~-~~P~lI~~~~  175 (176)
                      .               .++++|||+++ .|||||.++|.++++++.+.. ++|++|++.+
T Consensus       260 ~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T  319 (677)
T PLN02582        260 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVT  319 (677)
T ss_pred             HHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence            0               25899999988 899999999999999986432 6999999864

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.92  E-value=2.1e-24  Score=191.73  Aligned_cols=157  Identities=18%  Similarity=0.208  Sum_probs=127.0

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC--CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR--LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA   89 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~--~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~   89 (176)
                      -|+..+++|+.++.  ...|..+ ++.|++.+.  .... +..|..|.+++.|+|+|+|.++ .+.+++|+|++|||+++
T Consensus        74 ~~~~~l~~G~~~~~--~~~~~~g-~~~G~~~~~~s~~~~-~~~g~~~~~ls~A~G~A~A~k~-~~~~~~vv~~iGDG~~~  148 (581)
T PRK12315         74 SYPHKMLTGRKEAF--LDPDHYD-DVTGYTNPEESEHDF-FTVGHTSTSIALATGLAKARDL-KGEKGNIIAVIGDGSLS  148 (581)
T ss_pred             hHHHHHHcCCccch--hhHHHcC-CCCCCCCCCCCCCCC-cCCCcHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchhhh
Confidence            48888899975443  3345554 577887764  2222 4678899999999999999886 44567899999999999


Q ss_pred             CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---------ccccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHH
Q psy786           90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---------QHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSS  159 (176)
Q Consensus        90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~  159 (176)
                      +|++||+++.|+.|++| +++|+|||+|++++++..         .....++.+++++|||+++.+ ||+|++++.++++
T Consensus       149 eG~~~EAln~A~~~k~~-li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~  227 (581)
T PRK12315        149 GGLALEGLNNAAELKSN-LIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFK  227 (581)
T ss_pred             cchHHHHHHHHHhhCCC-EEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHH
Confidence            99999999999999987 889999999999977642         112234567899999999988 9999999999999


Q ss_pred             HHHhhCCCcEEEEeee
Q psy786          160 FKLQKAIGCVWIQRGC  175 (176)
Q Consensus       160 ~a~~~~~~P~lI~~~~  175 (176)
                      +|. ..++|++|++++
T Consensus       228 ~a~-~~~gP~~i~~~T  242 (581)
T PRK12315        228 EVK-DIDHPIVLHIHT  242 (581)
T ss_pred             HHH-hCCCCEEEEEEe
Confidence            985 467999999875

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.92  E-value=2.4e-25  Score=171.84  Aligned_cols=116  Identities=24%  Similarity=0.291  Sum_probs=99.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ...|+||+++|.|+|++++.+     +++||+++|||+|++  ..++|+||+++++|++++|+||++|++....+     
T Consensus        47 ~~~g~mG~~lp~aiGa~la~~-----~~~vv~i~GDG~f~~--~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~  119 (186)
T cd02015          47 GGLGTMGFGLPAAIGAKVARP-----DKTVICIDGDGSFQM--NIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYE  119 (186)
T ss_pred             CCccchhchHHHHHHHHHhCC-----CCeEEEEEcccHHhc--cHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcC
Confidence            456999999999999999876     689999999999996  45679999999999999999999998753211     


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ...+.+||++++++||+++++|+  +.+++.+++++|+ ..++|+|||+.+
T Consensus       120 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~  173 (186)
T cd02015         120 GRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEAL-ASDGPVLLDVLV  173 (186)
T ss_pred             CceeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  11134799999999999999997  7999999999997 468999999986

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.92  E-value=1.7e-24  Score=163.12  Aligned_cols=115  Identities=17%  Similarity=0.131  Sum_probs=99.6

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCCcEEEEEecCCCccccCccccccc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLDNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      ..|+||+++|.|+|++++.+      ++|||++|||+|+|.  .++|.|++++ ++|++++|+||++|++...+......
T Consensus        40 ~~gsmG~~lp~AiGa~~a~~------~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~  111 (157)
T cd02001          40 MLGSMGLAGSIGLGLALGLS------RKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSN  111 (157)
T ss_pred             eecchhhHHHHHHHHHhcCC------CcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCC
Confidence            38999999999999999864      689999999999964  4569999999 59999999999999987644433346


Q ss_pred             HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeeeC
Q psy786          130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC  176 (176)
Q Consensus       130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~~  176 (176)
                      +||.++|++||+++++|+  +++++.++++++++ .++|++||+.+.
T Consensus       112 ~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~vi~v~i~  155 (157)
T cd02001         112 VNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA-TTGPTLLHAPIA  155 (157)
T ss_pred             CCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh-CCCCEEEEEEec
Confidence            899999999999999996  89999999999984 689999999863

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.91  E-value=1.3e-24  Score=166.16  Aligned_cols=113  Identities=26%  Similarity=0.259  Sum_probs=97.8

Q ss_pred             cccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-------
Q psy786           53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-------  125 (176)
Q Consensus        53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-------  125 (176)
                      |+||+++|.|+|++++.+     +++|+|++|||+|+++.  ++|++|+++++|++++|+||++|++....+.       
T Consensus        49 g~mG~~lp~aiGaala~~-----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~  121 (178)
T cd02002          49 GGLGWGLPAAVGAALANP-----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGP  121 (178)
T ss_pred             ccccchHHHHHHHHhcCC-----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCc
Confidence            999999999999999876     68999999999999863  6799999999999999999999998642211       


Q ss_pred             ----------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ----------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ----------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                ..+.+|+.+++++||+++++|+  +++++.+++++|+ ..++|++||+++
T Consensus       122 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~vi~v~v  178 (178)
T cd02002         122 GENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREAL-AEGGPALIEVVV  178 (178)
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                      1134789999999999999997  6999999999997 468999999874

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.91  E-value=2.8e-24  Score=164.89  Aligned_cols=118  Identities=21%  Similarity=0.180  Sum_probs=100.1

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----  126 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----  126 (176)
                      .+|+||+++|.|+|++++.+     +++||+++|||+|++. .+++|.+|+++++|++++|+||++|++...++..    
T Consensus        49 ~~g~mG~gl~~AiGa~la~p-----~~~Vv~i~GDG~f~~~-g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~  122 (178)
T cd02008          49 TCTCMGASIGVAIGMAKASE-----DKKVVAVIGDSTFFHS-GILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK  122 (178)
T ss_pred             ccccCccHHHHHhhHHhhCC-----CCCEEEEecChHHhhc-cHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence            58999999999999999987     7899999999999863 1578999999999999999999999876543321    


Q ss_pred             -----cccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 -----HQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 -----~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ....||.+++++||+++++| +.++.+++.+++++|+ +.++|.+|+++.
T Consensus       123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~-~~~gp~lI~v~~  176 (178)
T cd02008         123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEAL-AVPGVSVIIAKR  176 (178)
T ss_pred             cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                 12479999999999999998 5667777779999997 568999999874

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.91  E-value=2.5e-24  Score=162.48  Aligned_cols=120  Identities=25%  Similarity=0.319  Sum_probs=103.4

Q ss_pred             CccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-
Q psy786           46 NFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-  124 (176)
Q Consensus        46 ~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-  124 (176)
                      .......++||+++|.|+|++++.|     +++|++++|||+|++  .++++++|.++++|++++|+||+.|++....+ 
T Consensus        39 ~~~~~~~g~~G~~~~~a~Gaa~a~~-----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~  111 (168)
T cd00568          39 FLTSTGFGAMGYGLPAAIGAALAAP-----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQE  111 (168)
T ss_pred             EEeCCCchhhhhhHHHHHHHHHhCC-----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHH
Confidence            3455678999999999999999987     689999999999997  56889999999999999999999998765431 


Q ss_pred             ---------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ---------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ---------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                               ...+.+|+.+++++||+++++|+  +++++.+++++++ ..++|++||+++
T Consensus       112 ~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~-~~~~p~~i~v~~  168 (168)
T cd00568         112 AFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL-AAGGPALIEVKT  168 (168)
T ss_pred             HHcCCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                     22345689999999999999997  7999999999997 578999999875

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.91  E-value=3.9e-25  Score=165.47  Aligned_cols=117  Identities=23%  Similarity=0.269  Sum_probs=100.2

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      +...++||+++|.|+|++++.+     +++||+++|||+|++.  ..+|.|+.++++|+++||+||++|++....+.   
T Consensus        24 ~~~~g~mG~~~~~aiGa~~a~p-----~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~   96 (153)
T PF02775_consen   24 SGGFGSMGYALPAAIGAALARP-----DRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFG   96 (153)
T ss_dssp             STTTT-TTTHHHHHHHHHHHST-----TSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTT
T ss_pred             CCCccccCCHHHhhhHHHhhcC-----cceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCc
Confidence            3578999999999999999876     7899999999999974  56799999999999999999999998654311   


Q ss_pred             -------c---cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          126 -------Q---HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       126 -------~---~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                             .   ....||.++++++|+++++|+..|++|+.+++++|+ +.++|+|||+
T Consensus        97 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~-~~~gp~vIeV  153 (153)
T PF02775_consen   97 GGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL-ESGGPAVIEV  153 (153)
T ss_dssp             STCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH-HSSSEEEEEE
T ss_pred             CcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH-hCCCcEEEEc
Confidence                   1   445799999999999999997455599999999998 6899999996

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>PRK06163 hypothetical protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=166.83  Aligned_cols=115  Identities=19%  Similarity=0.149  Sum_probs=98.5

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-CCCcEEEEEecCCCccccCcccc-cc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-KLDNLCVIFDINRLGQSEPTSLQ-HQ  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~lp~liiV~~nn~~~~~~~~~~~-~~  128 (176)
                      .+|+||+++|+|+|++++.+     +++|||++|||+|+|  ..++|.|++++ ++|+++||+||++|++....... ..
T Consensus        55 ~~GsMG~glpaAiGaalA~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~  127 (202)
T PRK06163         55 MLGSMGLAFPIALGVALAQP-----KRRVIALEGDGSLLM--QLGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQ  127 (202)
T ss_pred             eecccccHHHHHHHHHHhCC-----CCeEEEEEcchHHHH--HHHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCC
Confidence            47999999999999999976     789999999999996  45679999887 68999999999999986543222 23


Q ss_pred             cHHHHHHHhhcCce-EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          129 TEVYRKRLDAFGFN-AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       129 ~~~~~~~a~a~G~~-~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .+||.++|++||++ +++|+  +.++|.+++++++ ..++|+|||+++
T Consensus       128 ~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  172 (202)
T PRK06163        128 TVDVVAIARGAGLENSHWAA--DEAHFEALVDQAL-SGPGPSFIAVRI  172 (202)
T ss_pred             CCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence            47999999999998 67886  8999999999997 568999999975

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.91  E-value=5.7e-24  Score=164.67  Aligned_cols=115  Identities=19%  Similarity=0.222  Sum_probs=98.2

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccccc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      .+|+||+++|.|+|++++.+     +++|+|++|||+|++  ..++|.|++++++ |++++|+||++|++..........
T Consensus        46 ~~g~mG~~lpaAiGaala~p-----~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~  118 (188)
T cd03371          46 TVGSMGHASQIALGIALARP-----DRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFD  118 (188)
T ss_pred             ecCccccHHHHHHHHHHhCC-----CCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCC
Confidence            35999999999999999986     689999999999996  4577999999997 688999999999886543322335


Q ss_pred             HHHHHHHhhcCceE-EEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          130 EVYRKRLDAFGFNA-VVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       130 ~~~~~~a~a~G~~~-~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      +||.+++++||+++ .+|+  +++++.+++++++ +.++|+|||+.+
T Consensus       119 ~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~~  162 (188)
T cd03371         119 VSLPAIAKACGYRAVYEVP--SLEELVAALAKAL-AADGPAFIEVKV  162 (188)
T ss_pred             CCHHHHHHHcCCceEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence            79999999999997 4786  8999999999997 468999999976

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.91  E-value=2.5e-24  Score=164.82  Aligned_cols=116  Identities=20%  Similarity=0.141  Sum_probs=98.5

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ..+.+.||+++|.|+|++++.      +++|||++|||+|++  ..++|.|++++++|++++|+||++|++....+.   
T Consensus        47 ~~g~g~mG~~l~~aiGa~la~------~~~Vv~i~GDGsf~m--~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~  118 (175)
T cd02009          47 NRGASGIDGTLSTALGIALAT------DKPTVLLTGDLSFLH--DLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASF  118 (175)
T ss_pred             cCCccchhhHHHHHHHHHhcC------CCCEEEEEehHHHHH--hHHHHHhccccCCCeEEEEEECCCCchheeccCCcc
Confidence            345688999999999999985      468999999999996  356799999999999999999999987542211   


Q ss_pred             ------cc---ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QH---QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~---~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ..   ..+||.+++++||+++++|+  +++++.+++++++ +.++|++||+.+
T Consensus       119 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~v  174 (175)
T cd02009         119 EDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESAL-AQDGPHVIEVKT  174 (175)
T ss_pred             cchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                  11   24799999999999999996  8999999999997 478999999975

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.91  E-value=7.3e-24  Score=163.35  Aligned_cols=118  Identities=19%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ....|+||+++|.|+|++++.+     +++|++++|||+|++. . .+|.|++++++|++++|+|||+|++....+.   
T Consensus        46 ~~~~g~mG~~l~~aiGaala~~-----~~~vv~i~GDG~f~~~-~-~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~  118 (183)
T cd02005          46 QPLWGSIGYSVPAALGAALAAP-----DRRVILLVGDGSFQMT-V-QELSTMIRYGLNPIIFLINNDGYTIERAIHGPEA  118 (183)
T ss_pred             ccchhhHhhhHHHHHHHHHhCC-----CCeEEEEECCchhhcc-H-HHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCc
Confidence            3467999999999999999986     6899999999999873 4 4599999999999999999999997542211   


Q ss_pred             ---ccccHHHHHHHhhcC----ceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ---QHQTEVYRKRLDAFG----FNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ---~~~~~~~~~~a~a~G----~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                         ....+||.+++++||    +++.+|+  +++|+.++++++++..++|+|||+.+
T Consensus       119 ~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~~~~~p~liev~~  173 (183)
T cd02005         119 SYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALFNRDKLSLIEVIL  173 (183)
T ss_pred             CcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence               122479999999999    6899995  89999999999985368999999976

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=99.91  E-value=5.7e-24  Score=165.29  Aligned_cols=156  Identities=13%  Similarity=0.057  Sum_probs=116.7

Q ss_pred             CCCChHHHHHHHHcC---CCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEE
Q psy786            6 IPFRTNRSKAWAEAG---LFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCL   82 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G---~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~   82 (176)
                      =||++.+|++..+..   ..|++.+ -..+.|+.....  ...+ +....++||+++|+|+|++++.+     +++||++
T Consensus         5 c~~~~~~~~~~~~~~~~~~~~~d~i-i~~D~G~~~~~~--~~~~-~~~~~g~mG~glpaAiGa~la~p-----~r~Vv~i   75 (193)
T cd03375           5 CGDGSILKALAKALAELGIDPEKVV-VVSGIGCSSRLP--YYFN-TYGFHTLHGRALAVATGVKLANP-----DLTVIVV   75 (193)
T ss_pred             CCcHHHHHHHHHHHHHhCCCCCCEE-EEeCCChhceeh--hhcc-ccchhhhhccHHHHHHHHHHhCC-----CCeEEEE
Confidence            378899999888874   3344422 234455322111  1111 22234899999999999999986     7899999


Q ss_pred             ECCCc-cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-c---------------cccHHHHHHHhhcCceEE-
Q psy786           83 VGDGE-SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-Q---------------HQTEVYRKRLDAFGFNAV-  144 (176)
Q Consensus        83 ~GDG~-~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-~---------------~~~~~~~~~a~a~G~~~~-  144 (176)
                      +|||+ |++  ..++|.|++++++|++++|+||+.|++.+.++. .               .+.+||.++++++|++++ 
T Consensus        76 ~GDGs~f~m--~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~  153 (193)
T cd03375          76 SGDGDLAAI--GGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVA  153 (193)
T ss_pred             eccchHhhc--cHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEE
Confidence            99999 565  346799999999999999999999998764321 0               113689999999999985 


Q ss_pred             --EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          145 --VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       145 --~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        +|  .+++++.+++++|+ +.++|++||+.+
T Consensus       154 ~~~v--~~~~el~~al~~al-~~~gp~vIev~~  183 (193)
T cd03375         154 RGFS--GDIKQLKEIIKKAI-QHKGFSFVEVLS  183 (193)
T ss_pred             EEec--CCHHHHHHHHHHHH-hcCCCEEEEEEC
Confidence              45  48999999999998 478999999864

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.91  E-value=1.5e-23  Score=160.74  Aligned_cols=117  Identities=24%  Similarity=0.225  Sum_probs=99.2

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ....|+||+++|.|+|++++.+     +++|++++|||+|+++  .++|+++.++++|++++|+||++|++....+    
T Consensus        47 ~~~~g~mG~~~~~aiGa~~a~~-----~~~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~  119 (178)
T cd02014          47 SGLLATMGNGLPGAIAAKLAYP-----DRQVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMG  119 (178)
T ss_pred             CCCCchhhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence            3467999999999999999876     6899999999999975  4559999999999999999999998743111    


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .....+||.+++++||+++++++  +++++.+++++++ ..++|+|||+.+
T Consensus       120 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~-~~~~p~liev~~  172 (178)
T cd02014         120 QPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEAL-AADGPVVIDVVT  172 (178)
T ss_pred             CCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11234699999999999999997  8999999999997 468999999976

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.90  E-value=7.3e-24  Score=187.05  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             CCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc
Q psy786           42 TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE  121 (176)
Q Consensus        42 ~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~  121 (176)
                      .|+......+.|+||+++|+|+|++++.+     +++|||++|||+|+|  ..++|+||+++++|++++|+||+.|++..
T Consensus       397 ~p~~~~~s~~~GtMG~glPaAIGAkla~P-----~r~Vv~i~GDG~F~m--~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~  469 (550)
T COG0028         397 RPRRFLTSGGLGTMGFGLPAAIGAKLAAP-----DRKVVAIAGDGGFMM--NGQELETAVRYGLPVKIVVLNNGGYGMVR  469 (550)
T ss_pred             CCCcEEcCCCCccccchHHHHHHHHhhCC-----CCcEEEEEcccHHhc--cHHHHHHHHHhCCCEEEEEEECCccccch
Confidence            34433344688999999999999999987     789999999999997  46779999999999999999999999876


Q ss_pred             Cccccccc---------HH-HHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          122 PTSLQHQT---------EV-YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       122 ~~~~~~~~---------~~-~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      ..+.....         .. |.++|++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       470 ~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al-~~~~p~lidv~i  530 (550)
T COG0028         470 QWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL-ASDGPVLIDVVV  530 (550)
T ss_pred             HHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence            54322111         12 9999999999999997  9999999999998 578999999864

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=99.90  E-value=7.7e-24  Score=188.62  Aligned_cols=117  Identities=16%  Similarity=0.074  Sum_probs=100.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|+|.  .++|+||+++++|+++||+||++|++....+.    
T Consensus       415 ~~~gsmG~glpaaiGa~lA~p-----dr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~  487 (588)
T TIGR01504       415 GQAGPLGWTIPAALGVCAADP-----KRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDM  487 (588)
T ss_pred             CccccccchHhHHHhhhhhCC-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcc
Confidence            467999999999999999986     7899999999999974  46799999999999999999999987542111    


Q ss_pred             ------cc----------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786          126 ------QH----------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~----------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~  175 (176)
                            ..          ..+||.++|++||+++.+|+  ++++|.+++++|++   ..++|+|||+++
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i  554 (588)
T TIGR01504       488 DYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVIL  554 (588)
T ss_pred             cccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence                  00          13799999999999999996  89999999999985   368999999986

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PRK05261 putative phosphoketolase; Provisional

Probab=99.89  E-value=1.5e-22  Score=182.63  Aligned_cols=149  Identities=21%  Similarity=0.323  Sum_probs=129.0

Q ss_pred             ChHHHHHHHHcC-----C--CCHHH--Hh-hhhhcCCC--CCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCc
Q psy786            9 RTNRSKAWAEAG-----L--FPVSE--LK-NLRKIDSD--LEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKAS   76 (176)
Q Consensus         9 ~~~~ya~l~~~G-----~--~~~e~--l~-~~r~~~~~--l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~   76 (176)
                      .+.+||.+++.|     .  ++.++  |. .||++++.  +++|+.+.+|++...+|++|++++.|+|+|+..+     +
T Consensus        86 ~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~~-----d  160 (785)
T PRK05261         86 GPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDNP-----D  160 (785)
T ss_pred             HHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcCC-----C
Confidence            467999999999     3  44455  77 68999855  9999998899999999999999999999998765     7


Q ss_pred             ceEEEEECCCccCCchH---HHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHH
Q psy786           77 YRTYCLVGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVE  152 (176)
Q Consensus        77 ~~vv~~~GDG~~~~G~~---~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~  152 (176)
                      .+|+|++|||++++|..   |++..++..+++.+++.|+++|+|++++++... .+..++.+++++|||+++.|||+|++
T Consensus       161 ~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~  240 (785)
T PRK05261        161 LIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPA  240 (785)
T ss_pred             CEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHH
Confidence            79999999999999873   887788888899999999999999999998865 34578999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy786          153 HLVKVSSFKL  162 (176)
Q Consensus       153 ~l~~al~~a~  162 (176)
                      ++.+++++|+
T Consensus       241 av~~a~a~al  250 (785)
T PRK05261        241 DMHQEMAAAL  250 (785)
T ss_pred             HHHHHHHHHH
Confidence            8888854443

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=99.89  E-value=5.2e-23  Score=158.40  Aligned_cols=113  Identities=21%  Similarity=0.205  Sum_probs=96.5

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcC-CCcEEEEEecCCCccccCccccc-c
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYK-LDNLCVIFDINRLGQSEPTSLQH-Q  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~-lp~liiV~~nn~~~~~~~~~~~~-~  128 (176)
                      ..|+||+++|.|+|++++.      +++|||++|||+|+++  .++|.|+++++ +|++++|+||++|++...+.... .
T Consensus        40 ~~gsmG~~lpaAiGa~la~------~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~  111 (181)
T TIGR03846        40 MLGSMGLASSIGLGLALAT------DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASR  111 (181)
T ss_pred             eccccccHHHHHHHHHHcC------CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCC
Confidence            3799999999999999985      4689999999999964  46799999999 59999999999999876432222 2


Q ss_pred             cHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          129 TEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .+||.+++++||+++.+ |+  +++++.++++ ++ ..++|.|||+++
T Consensus       112 ~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~-~~~~p~li~v~~  155 (181)
T TIGR03846       112 RTDLELVAKAAGIRNVEKVA--DEEELRDALK-AL-AMKGPTFIHVKV  155 (181)
T ss_pred             CCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HH-cCCCCEEEEEEe
Confidence            57899999999999998 85  8999999997 76 578999999986

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PRK12474 hypothetical protein; Provisional

Probab=99.89  E-value=3.4e-23  Score=182.01  Aligned_cols=116  Identities=25%  Similarity=0.283  Sum_probs=99.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ..+|+||+++|.|+|+++|.+     +++|||++|||+|+|  ..++|+||++++||+++||+||++|++....+     
T Consensus       386 ~~~gsmG~glpaAiGa~lA~p-----~r~vv~i~GDG~f~m--~~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~  458 (518)
T PRK12474        386 LTGGSIGQGLPLAAGAAVAAP-----DRKVVCPQGDGGAAY--TMQALWTMARENLDVTVVIFANRSYAILNGELQRVGA  458 (518)
T ss_pred             cCCCccCccHHHHHHHHHHCC-----CCcEEEEEcCchhcc--hHHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcC
Confidence            345999999999999999986     789999999999997  45679999999999999999999999754210     


Q ss_pred             ----------c--ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----------L--QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----------~--~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                .  ..+.+||.++|++||+++++|+  +++||.+++++|+ ..++|+|||+.+
T Consensus       459 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~-~~~~p~liev~~  518 (518)
T PRK12474        459 QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM-AQRGPRLIEAMI  518 (518)
T ss_pred             CCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEC
Confidence                      0  0113689999999999999997  8999999999997 578999999864

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.89  E-value=2.4e-23  Score=185.41  Aligned_cols=118  Identities=16%  Similarity=0.214  Sum_probs=100.9

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||+++++|+++||+||++|++....+    
T Consensus       433 ~~~~gsmG~glpaaiGa~lA~p-----~r~Vv~i~GDGsf~m--~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~  505 (587)
T PRK06965        433 SGGLGTMGVGLPYAMGIKMAHP-----DDDVVCITGEGSIQM--CIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEY  505 (587)
T ss_pred             CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhc
Confidence            3467999999999999999976     789999999999997  45679999999999999999999998754211    


Q ss_pred             -----c-cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----L-QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~-~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           . .. ..+||.+++++||+++++|+  +.++|.+++++|++..++|+|||+.+
T Consensus       506 ~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lieV~i  561 (587)
T PRK06965        506 SKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRLKDRTVFLDFQT  561 (587)
T ss_pred             CCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                 0 11 24699999999999999996  89999999999985457899999975

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.89  E-value=2.1e-23  Score=185.23  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=100.3

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|+|+|++++.+     +++|||++|||+|+|  ..++|+||++++||+++||+||++|++....+.    
T Consensus       418 ~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~  490 (572)
T PRK08979        418 GGLGTMGFGLPAAMGVKFAMP-----DETVVCVTGDGSIQM--NIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQ  490 (572)
T ss_pred             CCcccccchhhHHHhhhhhCC-----CCeEEEEEcchHhhc--cHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhC
Confidence            467999999999999999986     789999999999997  446799999999999999999999997642211    


Q ss_pred             ------c-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------Q-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            . ...+||.++|++||.++.+|+  +++||.+++++|++..++|+|||+++
T Consensus       491 ~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lIev~i  545 (572)
T PRK08979        491 GRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAMKDRLVFVDINV  545 (572)
T ss_pred             CcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                  1 124699999999999999996  89999999999985348999999875

>PRK06154 hypothetical protein; Provisional

Probab=99.89  E-value=4.1e-23  Score=183.20  Aligned_cols=117  Identities=20%  Similarity=0.114  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ...|+||+++|.|+|++++.+     +++|||++|||+|+|  ..++|+||+++|||+++||+||++|++....+.    
T Consensus       428 ~~~gsmG~glpaaiGa~la~p-----~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~  500 (565)
T PRK06154        428 GKTTQLGYGLGLAMGAKLARP-----DALVINLWGDAAFGM--TGMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTT  500 (565)
T ss_pred             CCCcccccHHHHHHHHHHhCC-----CCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcC
Confidence            357999999999999999986     789999999999997  446799999999999999999999997543211    


Q ss_pred             ----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh--hCCCcEEEEeee
Q psy786          126 ----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ--KAIGCVWIQRGC  175 (176)
Q Consensus       126 ----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~~  175 (176)
                          ....+||.++|++||+++++|+  ++++|.+++++|++  +.++|+|||+++
T Consensus       501 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v  554 (565)
T PRK06154        501 KYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVIT  554 (565)
T ss_pred             cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEe
Confidence                1113699999999999999997  89999999999985  257899999874

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=99.89  E-value=9.5e-23  Score=156.69  Aligned_cols=113  Identities=20%  Similarity=0.212  Sum_probs=97.2

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccc-c
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQH-Q  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~-~  128 (176)
                      ..|+||+++|.|+|++++.+      ++|+|++|||+|+++  .+++.++.++++ |++++|+||++|++...+.... .
T Consensus        40 ~~g~mG~~lp~AiGaala~~------~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~  111 (179)
T cd03372          40 MLGSMGLASSIGLGLALAQP------RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGK  111 (179)
T ss_pred             cccchhhHHHHHHHHHhcCC------CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCC
Confidence            37999999999999999864      589999999999964  467999999995 6888899999999875443322 2


Q ss_pred             cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .+|+.+++++||+++.++++ +++++.+++++++   ++|.+||+++
T Consensus       112 ~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~---~gp~lIev~~  154 (179)
T cd03372         112 KTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL---DGPSFIHVKI  154 (179)
T ss_pred             CCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc---CCCEEEEEEE
Confidence            57899999999999999975 8999999999986   7999999986

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.89  E-value=2.9e-23  Score=185.13  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=100.3

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||++|++....+    
T Consensus       426 ~~~~gsmG~glpaaiGa~lA~p-----~r~Vv~i~GDG~f~m--~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~  498 (595)
T PRK09107        426 SGGLGTMGYGLPAALGVQIAHP-----DALVIDIAGDASIQM--CIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLH  498 (595)
T ss_pred             CCCchhhhhhHHHHHHHHHhCC-----CCeEEEEEcCchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHh
Confidence            3467999999999999999986     789999999999997  44679999999999999999999998754211    


Q ss_pred             -----cc--cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQ--HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~--~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ..  ...+||.++|++||+++++|+  ++++|.+++++|+ ..++|+|||+.+
T Consensus       499 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  553 (595)
T PRK09107        499 GNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMI-DVDKPVIFDCRV  553 (595)
T ss_pred             CCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11  124699999999999999996  8999999999997 468999999975

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=99.89  E-value=4.5e-23  Score=164.72  Aligned_cols=165  Identities=25%  Similarity=0.344  Sum_probs=119.2

Q ss_pred             CCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786            4 NEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRTY   80 (176)
Q Consensus         4 ~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv   80 (176)
                      |.+.|+..  -|+....+|+  +|.+.+.|+.+ ++.|+|.+....++ ++.|.-+.++++|+|+|.|+++ .+.++.||
T Consensus        62 DkivwDvGHQ~Y~HKiLTGR--~~~f~TlRq~g-GlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l-~~~~~~vV  137 (270)
T PF13292_consen   62 DKIVWDVGHQAYVHKILTGR--RDRFHTLRQYG-GLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDL-KGEDRKVV  137 (270)
T ss_dssp             SEEEESSSTT-HHHHHCTTT--CCCGGGTTSTT-S--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHH-HTS---EE
T ss_pred             CeEEEecccccchhhhccCc--HHHhchhhhcC-CcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHh-cCCCCcEE
Confidence            55667776  8999999997  47788999997 69999998755455 5889999999999999999986 44678999


Q ss_pred             EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----------------------c---c------
Q psy786           81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-----------------------H---Q------  128 (176)
Q Consensus        81 ~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-----------------------~---~------  128 (176)
                      +++|||++.-|+.+|||+-|...+-+ ++||+|||+.+|+......                       .   .      
T Consensus       138 aVIGDGalt~Gma~EALN~~g~~~~~-liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~  216 (270)
T PF13292_consen  138 AVIGDGALTGGMAFEALNNAGHLKSN-LIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFA  216 (270)
T ss_dssp             EEEETTGGGSHHHHHHHHHHHHHT-S-EEEEEEE-SBSSSB--SSHCCC-------------------------------
T ss_pred             EEECCcchhHHHHHHHHHHHHhcCCC-EEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99999999999999999999999876 8899999999987543100                       0   0      


Q ss_pred             ---cHHH----HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          129 ---TEVY----RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       129 ---~~~~----~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                         ...+    ..+++.+|++++ .+||||.++|.++++++. ..++|+||++.
T Consensus       217 ~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K-~~~gPvllHV~  269 (270)
T PF13292_consen  217 KRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAK-DIDGPVLLHVI  269 (270)
T ss_dssp             ------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHC-CSSSEEEEEEE
T ss_pred             HHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHh-cCCCCEEEEEe
Confidence               0011    135778899999 789999999999999985 67999999985

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.89  E-value=3.6e-23  Score=183.84  Aligned_cols=118  Identities=20%  Similarity=0.272  Sum_probs=100.6

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|+|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||++|++....+    
T Consensus       417 ~~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~  489 (574)
T PRK07979        417 SGGLGTMGFGLPAALGVKMALP-----EETVVCVTGDGSIQM--NIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIY  489 (574)
T ss_pred             CCCccchhhHHHHHHHHHHhCC-----CCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhc
Confidence            3467999999999999999986     789999999999997  45679999999999999999999999754211    


Q ss_pred             ------cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786          125 ------LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~  175 (176)
                            .. .+.+||.++|++||+++++|+  +++||.+++++|++.  .++|.|||+.+
T Consensus       490 ~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i  547 (574)
T PRK07979        490 SGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTV  547 (574)
T ss_pred             CCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEE
Confidence                  11 134699999999999999996  899999999999853  48999999875

>PRK07586 hypothetical protein; Validated

Probab=99.89  E-value=6.8e-23  Score=179.81  Aligned_cols=116  Identities=23%  Similarity=0.248  Sum_probs=99.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ...|+||+++|.|+|+++|.+     +++|||++|||+|+|  ..++|+||++++||+++||+||++|++....+     
T Consensus       382 ~~~g~mG~~lpaaiGa~lA~p-----~r~Vv~i~GDGsf~m--~~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~  454 (514)
T PRK07586        382 LTGGAIGQGLPLATGAAVACP-----DRKVLALQGDGSAMY--TIQALWTQARENLDVTTVIFANRAYAILRGELARVGA  454 (514)
T ss_pred             cCCcccccHHHHHHHHHHhCC-----CCeEEEEEechHHHh--HHHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcC
Confidence            345999999999999999976     789999999999996  45779999999999999999999999754210     


Q ss_pred             ------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                  ...+.+||.++|++||+++++|+  ++++|.+++++|+ ..++|.|||+++
T Consensus       455 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~-~~~~p~liev~~  514 (514)
T PRK07586        455 GNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL-AEPGPHLIEAVV  514 (514)
T ss_pred             CCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEC
Confidence                        01124699999999999999996  8999999999998 468999999974

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=99.88  E-value=1.2e-22  Score=179.32  Aligned_cols=117  Identities=21%  Similarity=0.208  Sum_probs=101.0

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ..+.|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+|+++++||+++||+||++|++....+.   
T Consensus       404 ~~~~g~mG~~lpaaiGa~la~~-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~  476 (539)
T TIGR02418       404 SNGMQTLGVALPWAIGAALVRP-----NTKVVSVSGDGGFLF--SSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKY  476 (539)
T ss_pred             CCCccccccHHHHHHHHHHhCC-----CCcEEEEEcchhhhc--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhc
Confidence            3467999999999999999986     789999999999997  456799999999999999999999997642111   


Q ss_pred             ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ....+||.++|++||+++.+|+  +++||.+++++|+ ..++|+|||+.+
T Consensus       477 ~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~-~~~~p~lIev~v  529 (539)
T TIGR02418       477 QRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAM-EVEGPVVVDIPV  529 (539)
T ss_pred             CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  1235799999999999999996  8999999999997 468999999975

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=99.88  E-value=1.8e-22  Score=179.38  Aligned_cols=117  Identities=18%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------  123 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------  123 (176)
                      ...|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+|++++++|+++||+||++|++....      
T Consensus       405 ~~~gsmG~glpaAiGa~la~p-----~r~Vv~i~GDGsf~m--~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~  477 (575)
T TIGR02720       405 NLFATMGVGVPGAIAAKLNYP-----DRQVFNLAGDGAFSM--TMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQ  477 (575)
T ss_pred             CCcchhhchHHHHHHHHHhCC-----CCcEEEEEcccHHHh--hHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCC
Confidence            357999999999999999876     789999999999997  4567999999999999999999999975311      


Q ss_pred             ---ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786          124 ---SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC  175 (176)
Q Consensus       124 ---~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~  175 (176)
                         ......+||+++|++||+++.+|+  +.++|.++++++++ ..++|+|||+++
T Consensus       478 ~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~p~liev~i  531 (575)
T TIGR02720       478 PLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKAIKQGKPVLIDAKI  531 (575)
T ss_pred             CcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHhhCCCCcEEEEEEe
Confidence               011235789999999999999996  89999999999973 468999999986

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PLN02573 pyruvate decarboxylase

Probab=99.88  E-value=1.3e-22  Score=180.46  Aligned_cols=119  Identities=14%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      ....+|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||++|++.....   
T Consensus       423 ~~~~~gsmG~glpaaiGa~lA~p-----~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~  495 (578)
T PLN02573        423 FQMQYGSIGWSVGATLGYAQAAP-----DKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGP  495 (578)
T ss_pred             eecchhhhhhhhhHHHHHHHhCC-----CCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccC
Confidence            34567999999999999999986     789999999999996  45679999999999999999999999764322   


Q ss_pred             -cccccHHHHHHHhhcC-----ceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786          125 -LQHQTEVYRKRLDAFG-----FNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC  175 (176)
Q Consensus       125 -~~~~~~~~~~~a~a~G-----~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~  175 (176)
                       .....+||.++|++||     +++.+|+  +++||.+++++|++ ..++|+|||+++
T Consensus       496 ~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~~~~~p~lieV~v  551 (578)
T PLN02573        496 YNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGEKKDCLCFIEVIV  551 (578)
T ss_pred             ccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence             1224579999999995     8899997  89999999999974 368999999986

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=99.88  E-value=1.4e-22  Score=180.00  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=100.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .+.|+||+++|.|+|++++.+     +++|||++|||+|+|  ..++|.||++++||+++||+||++|++....+     
T Consensus       405 ~~~G~mG~~lpaAiGa~la~p-----~r~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~  477 (574)
T PRK09124        405 FNHGSMANAMPQALGAQAAHP-----GRQVVALSGDGGFSM--LMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGY  477 (574)
T ss_pred             CCcccccchHHHHHHHHHhCC-----CCeEEEEecCcHHhc--cHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCC
Confidence            477999999999999999986     789999999999997  44679999999999999999999999853111     


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          .....+||.++|++||+++++|+  ++++|.+++++|+ ..++|+|||+++
T Consensus       478 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~i  529 (574)
T PRK09124        478 LTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAF-AHDGPALVDVVT  529 (574)
T ss_pred             ccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                11234699999999999999996  8999999999997 568999999986

>PRK05858 hypothetical protein; Provisional

Probab=99.88  E-value=8.6e-23  Score=180.31  Aligned_cols=116  Identities=16%  Similarity=0.040  Sum_probs=100.6

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ...|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|+||+++++|+++||+||+.|++....+.    
T Consensus       404 ~~~gsmG~~lp~aiGa~la~p-----~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~  476 (542)
T PRK05858        404 GPFGCLGTGPGYALAARLARP-----SRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYG  476 (542)
T ss_pred             CCccccccchhHHHHHHHhCC-----CCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcC
Confidence            357999999999999999986     7899999999999974  46799999999999999999999997542111    


Q ss_pred             ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ..+.+||.++|++||.++.+|+  ++++|.+++++|+ +.++|+|||+.+
T Consensus       477 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~~  529 (542)
T PRK05858        477 YDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAF-ASGVPYLVNVLT  529 (542)
T ss_pred             CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEE
Confidence                  1145799999999999999996  8999999999998 478999999975

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=99.88  E-value=1.4e-22  Score=178.81  Aligned_cols=117  Identities=16%  Similarity=0.091  Sum_probs=100.9

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ....|+||+++|.|+|++++.+     +++|||++|||+|+|  ..++|+||+++++|+++||+||++|++....+    
T Consensus       400 ~~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~  472 (539)
T TIGR03393       400 QPLWGSIGYTLPAAFGAQTACP-----NRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ  472 (539)
T ss_pred             chhhhhhhhHHHHHHHHHhcCC-----CCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCC
Confidence            4567999999999999999876     789999999999996  55779999999999999999999999764221    


Q ss_pred             --cccccHHHHHHHhhcCce----EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 --LQHQTEVYRKRLDAFGFN----AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 --~~~~~~~~~~~a~a~G~~----~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        .....+||.+++++||++    +++|+  +.++|.+++++|+ ..++|+|||+++
T Consensus       473 ~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i  526 (539)
T TIGR03393       473 RYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA-AHERLSLIEVVL  526 (539)
T ss_pred             CcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh-ccCCeEEEEEEc
Confidence              122347999999999985    78996  8999999999997 578999999986

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.88  E-value=9.1e-23  Score=181.23  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=100.3

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||++|++....+     
T Consensus       420 ~~~gsmG~glpaAiGa~la~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~  492 (574)
T PRK06466        420 GGLGTMGFGLPAAMGVKLAFP-----DQDVACVTGEGSIQM--NIQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYE  492 (574)
T ss_pred             CCcchhhchHHHHHHHHHhCC-----CCeEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcC
Confidence            467999999999999999976     789999999999997  44679999999999999999999999754211     


Q ss_pred             -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .. ...+||.++|++||.++.+|+  ++++|.+++++|++..++|+|||+.+
T Consensus       493 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~p~lIev~i  547 (574)
T PRK06466        493 GRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAMKDRLVFIDIYV  547 (574)
T ss_pred             CceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                 11 124699999999999999996  89999999999985348999999976

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=99.88  E-value=8.4e-23  Score=181.64  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ..++|+||+++|.|+|++++.+     +++|||++|||+|+|.  .++|+||++++||+++||+||++|++....+.   
T Consensus       426 ~~~~g~mG~~lpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~  498 (579)
T TIGR03457       426 PMSFGNCGYAFPTIIGAKIAAP-----DRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFY  498 (579)
T ss_pred             CCccccccchHHHHHhhhhhCC-----CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhh
Confidence            3456999999999999999976     7899999999999974  46799999999999999999999997542211   


Q ss_pred             -------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786          126 -------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC  175 (176)
Q Consensus       126 -------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~  175 (176)
                             .. ..+||.++|++||.++++|+  +++||.+++++|++.  .++|+|||+.+
T Consensus       499 ~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v  556 (579)
T TIGR03457       499 NNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVC  556 (579)
T ss_pred             CCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEe
Confidence                   11 22599999999999999996  899999999999852  57899999975

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK07524 hypothetical protein; Provisional

Probab=99.87  E-value=4.8e-22  Score=175.25  Aligned_cols=117  Identities=26%  Similarity=0.294  Sum_probs=100.3

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc-----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT-----  123 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~-----  123 (176)
                      ..+.|+||+++|.|+|++++.+     +++|||++|||+|+++  .++|+||++++||+++||+||++|++....     
T Consensus       403 ~~~~g~mG~~lp~aiGa~lA~p-----~~~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~  475 (535)
T PRK07524        403 STGYGTLGYGLPAAIGAALGAP-----ERPVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARD  475 (535)
T ss_pred             CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhc
Confidence            3467999999999999999976     7899999999999964  456999999999999999999999865321     


Q ss_pred             ----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 ----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 ----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          ......+||.++|++||+++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       476 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~  528 (535)
T PRK07524        476 IEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF-ARPGPTLIEVDQ  528 (535)
T ss_pred             CCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                111235799999999999999996  8999999999998 468999999986

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.87  E-value=2.1e-22  Score=178.90  Aligned_cols=117  Identities=16%  Similarity=0.196  Sum_probs=100.4

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|.||++++||+++||+||++|++....+    
T Consensus       418 ~~~~gsmG~~lp~aiGa~lA~p-----~~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~  490 (570)
T PRK06725        418 SGGLGTMGFGFPAAIGAQLAKE-----EELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFY  490 (570)
T ss_pred             cCCcccccchhhHHHhhHhhcC-----CCeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhc
Confidence            3467999999999999999976     7899999999999864  4669999999999999999999998754211    


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .....+||.+++++||+++.+|+  +++++.+++++++ ..++|+|||+.+
T Consensus       491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~i  544 (570)
T PRK06725        491 ENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAF-AHEGPVVVDFCV  544 (570)
T ss_pred             CCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  12235799999999999999996  8999999999997 468999999975

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.87  E-value=3.5e-22  Score=177.11  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .+.|+||+++|.|+|++++.+     +++|||++|||+|++.  .++|+||+++++|+++||+||++|++....+     
T Consensus       411 ~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~  483 (561)
T PRK06048        411 GGLGTMGYGFPAAIGAKVGKP-----DKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYD  483 (561)
T ss_pred             CCccccccHHHHHHHHHHhCC-----CCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcC
Confidence            456999999999999999876     7899999999999974  4679999999999999999999998753210     


Q ss_pred             -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .. .+.+||.++|++||+++++|+  +++||.+++++|+ ..++|+|||+.+
T Consensus       484 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~-~~~~p~liev~~  537 (561)
T PRK06048        484 KRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV-ASDRPVVIDFIV  537 (561)
T ss_pred             CcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11 135799999999999999996  8999999999998 578999999975

>KOG0225|consensus

Probab=99.87  E-value=3.9e-22  Score=162.48  Aligned_cols=124  Identities=25%  Similarity=0.466  Sum_probs=110.7

Q ss_pred             ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc
Q psy786           47 FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        47 ~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      .+-.+.|++|.++|.+.|+|+|.|+ ++.+..++++.|||+.++|.++|++|+|+.|+|| +||||+||.|+|.+.....
T Consensus       159 ~FyGGnGIVGAQiPLGaGia~A~kY-~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP-~IFvCENN~yGMGTs~~Ra  236 (394)
T KOG0225|consen  159 NFYGGNGIVGAQIPLGAGIAFAQKY-NREDAVCFALYGDGAANQGQVFEAFNMAALWKLP-VIFVCENNHYGMGTSAERA  236 (394)
T ss_pred             cccCccceeccCCCccccHHHHHHh-ccCCceEEEEeccccccchhHHHHhhHHHHhCCC-EEEEEccCCCccCcchhhh
Confidence            3557899999999999999999998 4556789999999999999999999999999999 8899999999999988877


Q ss_pred             cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEee
Q psy786          127 HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRG  174 (176)
Q Consensus       127 ~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~  174 (176)
                      ...++|.++. .| +++++|||.|+-++++|.+.|.+++   ++|+++|..
T Consensus       237 sa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~  285 (394)
T KOG0225|consen  237 SASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMD  285 (394)
T ss_pred             hcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            7778888876 34 9999999999999999999998743   689999975

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=99.87  E-value=4.4e-22  Score=176.07  Aligned_cols=117  Identities=18%  Similarity=0.255  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ...|+||+++|.|+|++++.+    .+++|||++|||+|++  ..++|+||++++||+++||+||++|++....+     
T Consensus       393 ~~~g~mG~glpaaiGa~la~p----~~~~Vv~i~GDGsf~~--~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~  466 (549)
T PRK06457        393 AWLGSMGIGVPGSVGASFAVE----NKRQVISFVGDGGFTM--TMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGY  466 (549)
T ss_pred             CCcchhhhhHHHHHHHHhcCC----CCCeEEEEEcccHHhh--hHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcC
Confidence            467999999999999999874    1579999999999996  45679999999999999999999999753211     


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          .....+||.++|++||+++.+|+  ++++|.+++++++ ..++|+|||+++
T Consensus       467 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  518 (549)
T PRK06457        467 PEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL-NTKGPAVLDAIV  518 (549)
T ss_pred             CcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                11234689999999999999996  8999999999997 468999999975

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=99.87  E-value=6.3e-22  Score=158.33  Aligned_cols=120  Identities=14%  Similarity=0.138  Sum_probs=96.6

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ..|+||+++|.|+|++++......++++|||++|||+|+ +|  .+++.++.++++|++++|+||+.|++...+..    
T Consensus        62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~  139 (237)
T cd02018          62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP  139 (237)
T ss_pred             CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence            449999999999999998110012378999999999986 54  34689999999999999999999997642221    


Q ss_pred             ------------ccccHHHHHHHhhcCceEEE---ecCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          126 ------------QHQTEVYRKRLDAFGFNAVV---VDGHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       126 ------------~~~~~~~~~~a~a~G~~~~~---vdG~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                                  ....+||+++|++||+++++   |+  +++++.+++++|+++.++|+||+++
T Consensus       140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~~~~GP~lI~v~  201 (237)
T cd02018         140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAISRTDGPTFIHAY  201 (237)
T ss_pred             CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                        12346999999999999985   64  8999999999998437899999998

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=99.87  E-value=4e-22  Score=177.01  Aligned_cols=116  Identities=24%  Similarity=0.195  Sum_probs=100.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|+|.  .++|+||++++||+++||+||++|++....+.    
T Consensus       418 ~~~g~mG~glpaAiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~  490 (572)
T PRK06456        418 SGMGTMGFGLPAAMGAKLARP-----DKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFG  490 (572)
T ss_pred             CCcccccchhHHHHHHHHhCC-----CCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhC
Confidence            467999999999999999986     7899999999999974  46799999999999999999999998642211    


Q ss_pred             ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .. +.+||.++|++||+++++|+  +++||.+++++|+ ..++|+|||+++
T Consensus       491 ~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~v  544 (572)
T PRK06456        491 KRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI-KEDIPAVIRVPV  544 (572)
T ss_pred             CCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  11 34799999999999999996  8999999999997 568999999975

>PRK11269 glyoxylate carboligase; Provisional

Probab=99.87  E-value=3.4e-22  Score=178.14  Aligned_cols=117  Identities=17%  Similarity=0.108  Sum_probs=99.7

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|++  ..++|+||++++||+++||+||++|++....+.    
T Consensus       416 ~~~G~mG~glpaAiGa~la~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~  488 (591)
T PRK11269        416 GQAGPLGWTIPAALGVRAADP-----DRNVVALSGDYDFQF--LIEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDM  488 (591)
T ss_pred             CccccccchhhhHHhhhhhCC-----CCcEEEEEccchhhc--CHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhcc
Confidence            467999999999999999976     789999999999997  346699999999999999999999987532110    


Q ss_pred             ------c----------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786          126 ------Q----------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~----------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~  175 (176)
                            .          .+.+||+++|++||+++.+|+  +++||.+++++|++   ..++|+|||+++
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v  555 (591)
T PRK11269        489 DYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVIL  555 (591)
T ss_pred             CccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence                  0          023789999999999999996  99999999999984   368999999986

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=99.87  E-value=9.3e-22  Score=174.99  Aligned_cols=117  Identities=21%  Similarity=0.243  Sum_probs=101.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ...|+||+++|.|+|++++.+     +++|||++|||+|++  ..++|+||+++++|+++||+||++|++....+     
T Consensus       405 ~~~gsmG~~~paAiGa~la~p-----~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~  477 (578)
T PRK06546        405 FRHGSMANALPHAIGAQLADP-----GRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGL  477 (578)
T ss_pred             CCcccccchhHHHHHHHHhCC-----CCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCC
Confidence            467999999999999999986     789999999999997  34569999999999999999999999753110     


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeeeC
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGCC  176 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~~  176 (176)
                          .....+||.+++++||+++.+|+  ++++|.+++++++ ..++|+|||++++
T Consensus       478 ~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~~  530 (578)
T PRK06546        478 PDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAF-AHPGPALVDVVTD  530 (578)
T ss_pred             CcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEeC
Confidence                11235799999999999999997  8999999999998 4689999999874

>PRK08322 acetolactate synthase; Reviewed

Probab=99.87  E-value=8.4e-22  Score=174.02  Aligned_cols=117  Identities=20%  Similarity=0.228  Sum_probs=100.5

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|+||+++++|+++||+||++|++....+    
T Consensus       402 ~~~~g~mG~~lpaaiGa~la~p-----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~  474 (547)
T PRK08322        402 DNALATMGAGLPSAIAAKLVHP-----DRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMG  474 (547)
T ss_pred             CCCcccccchhHHHHHHHHhCC-----CCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhc
Confidence            3467999999999999999976     7899999999999974  4679999999999999999999999764211    


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .....+||.++|++||+++++|+  ++++|.+++++++ ..++|+|||+.+
T Consensus       475 ~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIev~v  527 (547)
T PRK08322        475 FEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEAL-AQPGVHVIDCPV  527 (547)
T ss_pred             CCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11234799999999999999996  8999999999997 468999999875

>PRK08611 pyruvate oxidase; Provisional

Probab=99.87  E-value=5.9e-22  Score=176.16  Aligned_cols=117  Identities=21%  Similarity=0.167  Sum_probs=100.5

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|.||+++++|+++||+||++|++....+    
T Consensus       404 ~~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDGsf~m--~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~  476 (576)
T PRK08611        404 SSWLGTMGCGLPGAIAAKIAFP-----DRQAIAICGDGGFSM--VMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAG  476 (576)
T ss_pred             CCCchhhhhhHHHHHHHHHhCC-----CCcEEEEEcccHHhh--hHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhc
Confidence            3457999999999999999876     789999999999997  45679999999999999999999999753111    


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .....+||.++|++||+++++|+  ++++|.+++++++ ..++|+|||+++
T Consensus       477 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~v  529 (576)
T PRK08611        477 ELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL-AQDKPVIIDVYV  529 (576)
T ss_pred             CCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11235799999999999999996  8999999999997 568999999975

>PLN02470 acetolactate synthase

Probab=99.87  E-value=4.6e-22  Score=177.10  Aligned_cols=117  Identities=18%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++|||++|||+|+|.  .++|+||++++||+++||+||++|++....+    
T Consensus       422 ~~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~  494 (585)
T PLN02470        422 SGGLGAMGFGLPAAIGAAAANP-----DAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFY  494 (585)
T ss_pred             CCccccccchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHh
Confidence            3467999999999999999986     7899999999999974  4679999999999999999999998653210    


Q ss_pred             ------cccc--------cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQ--------TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~--------~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ....        .+||.++|++||+++++|+  +++||.+++++|++ .++|.|||+.+
T Consensus       495 ~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~lieV~i  556 (585)
T PLN02470        495 KANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD-TPGPYLLDVIV  556 (585)
T ss_pred             CCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence                  0111        2699999999999999996  89999999999974 78999999975

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.87  E-value=4.8e-22  Score=177.96  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ..+|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||+.|++....+.    
T Consensus       431 ~~~g~mG~glpaAiGA~lA~p-----~r~Vv~i~GDG~f~m--~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~  503 (616)
T PRK07418        431 AGLGTMGFGMPAAMGVKVALP-----DEEVICIAGDASFLM--NIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYG  503 (616)
T ss_pred             CCccccccHHHHHHHHHHhCC-----CCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcC
Confidence            467999999999999999976     789999999999997  456799999999999999999999997542111    


Q ss_pred             ------cc--ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QH--QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~--~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ..  +.+||.++|++||+++++|+  +++||.+++++|+ ..++|+|||+.+
T Consensus       504 ~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~-~~~~p~lIeV~i  558 (616)
T PRK07418        504 ERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEAL-AHDGPVLIDVHV  558 (616)
T ss_pred             CCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  11  24789999999999999996  8999999999997 478999999975

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=99.87  E-value=1.2e-21  Score=156.52  Aligned_cols=117  Identities=18%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ..++||+++|.|+|++++.+     +++|||++|||++ ++  ..++|.+|+++++|++++|+||+.|++.+.+..    
T Consensus        60 ~~gsmG~GlpaAiGa~~a~p-----~r~VV~i~GDG~~~~m--~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~  132 (235)
T cd03376          60 NAAAVASGIEAALKALGRGK-----DITVVAFAGDGGTADI--GFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTP  132 (235)
T ss_pred             CHHHHHHHHHHHHHHhccCC-----CCeEEEEEcCchHHhh--HHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCC
Confidence            45899999999999988765     7899999999995 65  456799999999999999999999996432111    


Q ss_pred             -----------------ccccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----------------QHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----------------~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                       ....+|+.++|+++|++++. ++..+++++.+++++|+ ..++|+|||+.+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~-~~~gP~lIev~~  199 (235)
T cd03376         133 YGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKAL-SIEGPAYIHILS  199 (235)
T ss_pred             CCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                             11346999999999999873 34459999999999998 468999999875

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>PRK07064 hypothetical protein; Provisional

Probab=99.87  E-value=5e-22  Score=175.33  Aligned_cols=116  Identities=22%  Similarity=0.240  Sum_probs=99.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ...|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||++++||+++||+||++|++....+     
T Consensus       402 ~~~g~mG~~lpaAiGa~lA~p-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~  474 (544)
T PRK07064        402 ALGGGIGQGLAMAIGAALAGP-----GRKTVGLVGDGGLML--NLGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYG  474 (544)
T ss_pred             cCCCccccccchhhhhhhhCc-----CCcEEEEEcchHhhh--hHHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcC
Confidence            345899999999999999976     789999999999997  44679999999999999999999999754211     


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .....+||.++|++||+++.+|+  +++||.+++++|+ ..++|+|||+++
T Consensus       475 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~~  527 (544)
T PRK07064        475 GRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREAL-AKEGPVLVEVDM  527 (544)
T ss_pred             CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-cCCCCEEEEEEc
Confidence                 11235799999999999999996  8999999999998 468999999974

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.87  E-value=6.2e-22  Score=175.84  Aligned_cols=117  Identities=20%  Similarity=0.321  Sum_probs=99.6

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|++.  .++|+||+++++|+++||+||++|++....+     
T Consensus       418 ~~~g~mG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~  490 (574)
T PRK06882        418 GGAGTMGFGLPAAIGVKFAHP-----EATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYS  490 (574)
T ss_pred             CCcccccchhHHHHHHHhhcC-----CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcC
Confidence            467999999999999999976     6899999999999974  4779999999999999999999998643211     


Q ss_pred             -----cc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .. ...+||.+++++||+++++|+  +.++|.+++++|++..++|+|||+.+
T Consensus       491 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~liev~i  545 (574)
T PRK06882        491 GRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSIKDKLVFVDVNV  545 (574)
T ss_pred             CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                 11 124689999999999999996  89999999999985457899999976

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=99.87  E-value=3.1e-22  Score=179.03  Aligned_cols=118  Identities=15%  Similarity=0.108  Sum_probs=100.1

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|+|++|||+|++  ..++|+||++++||+++||+||++|++....+    
T Consensus       443 ~~~~G~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~  515 (612)
T PRK07789        443 SGGLGTMGYAVPAAMGAKVGRP-----DKEVWAIDGDGCFQM--TNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFY  515 (612)
T ss_pred             CCCcccccchhhhHHhhhccCC-----CCcEEEEEcchhhhc--cHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhh
Confidence            3466999999999999999976     789999999999997  45679999999999999999999999754211    


Q ss_pred             ------ccc-----ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQH-----QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~-----~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ...     +.+||.++|++||+++++|+  +++||.+++++|++..++|+|||+.+
T Consensus       516 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~p~lIev~i  575 (612)
T PRK07789        516 EERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAINDRPVVIDFVV  575 (612)
T ss_pred             CCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence                  011     12689999999999999996  89999999999985347999999976

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.86  E-value=7.2e-22  Score=175.15  Aligned_cols=117  Identities=22%  Similarity=0.219  Sum_probs=99.7

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|+|++|||+|+|.  .++|+||++++||+++||+||++|++....+    
T Consensus       410 ~~~~g~mG~~l~~aiGa~la~p-----~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~  482 (563)
T PRK08527        410 SGGLGTMGYGLPAALGAKLAVP-----DKVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNNFLGMVRQWQTFFY  482 (563)
T ss_pred             CCCcccccchHHHHHHHHHhCC-----CCcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhc
Confidence            3467999999999999999986     6789999999999974  4569999999999999999999999764221    


Q ss_pred             ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ... ..+||.+++++||+++++|+  +++++.+++++|++ .++|+|||+.+
T Consensus       483 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~lieV~v  537 (563)
T PRK08527        483 EERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE-SDKVALIDVKI  537 (563)
T ss_pred             CCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEE
Confidence                  011 24699999999999999996  89999999999974 68999999875

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=99.86  E-value=9.1e-22  Score=175.60  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=100.0

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-----CCCcEEEEEecCCCccccCc
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-----KLDNLCVIFDINRLGQSEPT  123 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-----~lp~liiV~~nn~~~~~~~~  123 (176)
                      ...+|+||+++|.|+|++++.+     +++|||++|||+|+|.. .++|.|++++     +||+++||+||++|++....
T Consensus       411 s~~~g~mG~glpaaiGa~la~p-----~~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~  484 (597)
T PRK08273        411 SGTLATMGPAVPYAIAAKFAHP-----DRPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWE  484 (597)
T ss_pred             cCccccccchHHHHHHHHHhCC-----CCcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHH
Confidence            3467999999999999999986     78999999999999741 3669999999     89999999999999865321


Q ss_pred             c------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 S------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 ~------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      +            ...+.+||.++|++||+++++|+  +.+||.+++++|+ ..++|+|||+.+
T Consensus       485 q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~lIeV~~  545 (597)
T PRK08273        485 QRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEAL-AADRPVVLEVKT  545 (597)
T ss_pred             HHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence            1            11234789999999999999996  8999999999997 478999999975

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=99.86  E-value=5.1e-22  Score=176.39  Aligned_cols=117  Identities=22%  Similarity=0.245  Sum_probs=100.0

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|+||+++++|+++||+||++|++....+    
T Consensus       420 ~~~~g~mG~glpaAiGaala~p-----~~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~  492 (571)
T PRK07710        420 SGGLGTMGFGLPAAIGAQLAKP-----DETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNEALGMVRQWQEEFY  492 (571)
T ss_pred             CCCcccccchHHHHHHHHHhCC-----CCcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHh
Confidence            3466999999999999999976     7899999999999973  4569999999999999999999999754211    


Q ss_pred             -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                             .....+||.++|++||+++.+|+  ++++|.+++++|+ ..++|+|||+.+
T Consensus       493 ~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lieV~v  547 (571)
T PRK07710        493 NQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAI-ELQEPVVIDCRV  547 (571)
T ss_pred             CCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                   01134799999999999999996  8999999999997 468999999976

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=99.86  E-value=1e-21  Score=174.88  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ...+|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||+++++|+++||+||++|++....+.   
T Consensus       426 ~~~~g~mG~glpaaiGaala~p-----~~~vv~i~GDG~f~m--~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~  498 (585)
T CHL00099        426 SAGLGTMGYGLPAAIGAQIAHP-----NELVICISGDASFQM--NLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFY  498 (585)
T ss_pred             CccccchhhhHHHHHHHHHhCC-----CCeEEEEEcchhhhh--hHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhc
Confidence            3467999999999999999976     789999999999996  456799999999999999999999987532110   


Q ss_pred             ---------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ---------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ---------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                               ....+||.+++++||+++++|+  ++++|.+++++|++ .++|.|||+.+
T Consensus       499 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~-~~~p~liev~v  554 (585)
T CHL00099        499 GERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD-YDGPVLIDCQV  554 (585)
T ss_pred             CCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh-CCCCEEEEEEE
Confidence                     1124689999999999999996  89999999999974 78999999975

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=99.86  E-value=6.7e-22  Score=175.50  Aligned_cols=116  Identities=19%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++||+++|||+|+|  ..++|+||+++++|+++||+||++|++....+    
T Consensus       414 ~~~~g~mG~glpaaiGa~lA~p-----~~~Vv~i~GDG~f~m--~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~  486 (566)
T PRK07282        414 SGGLGTMGFGIPAAIGAKIANP-----DKEVILFVGDGGFQM--TNQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFY  486 (566)
T ss_pred             CCccccccchhhHhheeheecC-----CCcEEEEEcchhhhc--cHHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHh
Confidence            3467999999999999999976     789999999999997  44679999999999999999999999754211    


Q ss_pred             ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ..+ ..+||+++|++||+++.+|+  +++||.++++ ++ .+++|+|||+++
T Consensus       487 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~-~~~~p~lIeV~v  540 (566)
T PRK07282        487 EGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI-TEDVPMLIEVDI  540 (566)
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh-cCCCCEEEEEEe
Confidence                  112 35799999999999999996  8999999997 44 468999999975

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=99.86  E-value=1.4e-21  Score=172.81  Aligned_cols=117  Identities=20%  Similarity=0.251  Sum_probs=100.4

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++|++++|||+|+|.  .++|+||+++++|++++|+||++|++....+    
T Consensus       397 ~~~~g~mG~glpaAiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~  469 (548)
T PRK08978        397 SSGLGTMGFGLPAAIGAQVARP-----DDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFF  469 (548)
T ss_pred             CCchhhhhchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHh
Confidence            3466999999999999999976     7899999999999974  4679999999999999999999999754211    


Q ss_pred             ------ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            ... ..+||.+++++||+++.+|+  +++||.+++++++ ..++|.|||+++
T Consensus       470 ~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  524 (548)
T PRK08978        470 DERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLL-NSEGPYLLHVSI  524 (548)
T ss_pred             CCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  111 34799999999999999996  8999999999997 478999999986

>PRK08617 acetolactate synthase; Reviewed

Probab=99.86  E-value=1e-21  Score=173.78  Aligned_cols=116  Identities=22%  Similarity=0.181  Sum_probs=100.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .+.|+||+++|.|+|++++.+     +++|+|++|||+|+|  ..++|+||+++++|+++||+||+.|++....+.    
T Consensus       411 ~~~g~mG~~lpaaiGa~la~p-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~  483 (552)
T PRK08617        411 NGMQTLGVALPWAIAAALVRP-----GKKVVSVSGDGGFLF--SAMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYG  483 (552)
T ss_pred             CccccccccccHHHhhHhhcC-----CCcEEEEEechHHhh--hHHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcC
Confidence            467899999999999999876     789999999999996  456799999999999999999999997642111    


Q ss_pred             -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ....+||.++|++||+++.+|+  ++++|.+++++|+ ..++|+|||+.+
T Consensus       484 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~-~~~~p~liev~~  535 (552)
T PRK08617        484 RSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL-ATDGPVVIDIPV  535 (552)
T ss_pred             CcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence                 1235789999999999999996  8999999999998 568999999864

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=99.86  E-value=4.1e-21  Score=161.81  Aligned_cols=115  Identities=21%  Similarity=0.229  Sum_probs=97.7

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCC-CcEEEEEecCCCccccCccccccc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKL-DNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~l-p~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      ..|+||+++|.|+|++++.+     +++|||+.|||+|+|  ..++|.+++++++ |+++||+||+.|+..+.+......
T Consensus       219 ~~GsMG~a~p~AlG~ala~p-----~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~  291 (361)
T TIGR03297       219 TVGSMGHASQIALGLALARP-----DQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQH  291 (361)
T ss_pred             eechhhhHHHHHHHHHHHCC-----CCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCC
Confidence            35999999999999999976     789999999999996  4567999999996 777888888888876544433345


Q ss_pred             HHHHHHHhhcCc-eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          130 EVYRKRLDAFGF-NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       130 ~~~~~~a~a~G~-~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .||.++|++||+ .+++|+  +.++|.+++++++ +.++|+|||+++
T Consensus       292 ~d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~-~~~gp~lIeV~v  335 (361)
T TIGR03297       292 LDFAQIAKACGYAKVYEVS--TLEELETALTAAS-SANGPRLIEVKV  335 (361)
T ss_pred             CCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence            799999999997 577885  8999999999996 568999999986

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=99.86  E-value=1.8e-21  Score=171.74  Aligned_cols=116  Identities=15%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      ..+|+||+++|.|+|++++.+      +++|+++|||+|+|  ..++|+||+++++|+++||+||++|++....+.    
T Consensus       400 ~~~g~mG~glpaaiGa~lA~~------~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~  471 (535)
T TIGR03394       400 GYYAGMGFGVPAGIGAQCTSG------KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAF  471 (535)
T ss_pred             CccchhhhHHHHHHHHHhCCC------CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCc
Confidence            467999999999999999964      45688999999996  556799999999999999999999998653321    


Q ss_pred             -ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                       ....+||.+++++||.++++|+  +++||.+++++|++..++|.|||+++
T Consensus       472 ~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~p~lIev~i  520 (535)
T TIGR03394       472 NDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFATRGRFQLIEAML  520 (535)
T ss_pred             ccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence             2235799999999999999996  89999999999985445689999975

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK08266 hypothetical protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=172.96  Aligned_cols=115  Identities=24%  Similarity=0.273  Sum_probs=99.0

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc------
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS------  124 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~------  124 (176)
                      ..|+||+++|.|+|++++.+     +++|||++|||+|+++  .++|+||++++||++++|+||++|++....+      
T Consensus       400 ~~GsmG~~lp~aiGa~la~p-----~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~  472 (542)
T PRK08266        400 YQGTLGYGFPTALGAKVANP-----DRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGG  472 (542)
T ss_pred             CCcccccHHHHHHHHHHhCC-----CCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence            56999999999999999876     7899999999999975  5779999999999999999999998753211      


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          .....+||.+++++||+++++|+  +.+++.+++++++ ..++|+|||+.+
T Consensus       473 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~i  524 (542)
T PRK08266        473 RVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL-AHGGPVLIEVPV  524 (542)
T ss_pred             CcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence                11124689999999999999997  8999999999997 467999999976

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=99.86  E-value=2.6e-21  Score=171.30  Aligned_cols=115  Identities=19%  Similarity=0.126  Sum_probs=96.1

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-------
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP-------  122 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~-------  122 (176)
                      ..+|+||+++|.|+|++++.      +++||+++|||+|+|.  .++|+||+++++|+++||+||++|....+       
T Consensus       414 ~~~gsmG~~lpaaiGaala~------~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~  485 (554)
T TIGR03254       414 GTWGVMGIGMGYAIAAAVET------GKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGAD  485 (554)
T ss_pred             CCCCcCCchHHHHHHHHhcC------CCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCC
Confidence            46799999999999999973      5789999999999974  45699999999999999999998732210       


Q ss_pred             -ccccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          123 -TSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       123 -~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                       ..... +.+||.+++++||+++++|+  ++++|.+++++|+ ..++|+|||+++
T Consensus       486 ~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~i  537 (554)
T TIGR03254       486 PAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL-ASGKPTLINAVI  537 (554)
T ss_pred             CCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence             01111 35799999999999999996  8999999999997 468999999975

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=99.86  E-value=1.3e-21  Score=173.56  Aligned_cols=116  Identities=18%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|+||+++++|+++||+||++|++....+.    
T Consensus       416 ~~~g~mG~~lpaaiGa~la~~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~  488 (564)
T PRK08155        416 GGLGTMGFGLPAAIGAALANP-----ERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYG  488 (564)
T ss_pred             CCcccccchhHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcC
Confidence            467999999999999999986     7899999999999974  45699999999999999999999998643211    


Q ss_pred             ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .. ..+||+++|++||+++++|+  +++|+.+++++|+ ..++|+|||+.+
T Consensus       489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~~  542 (564)
T PRK08155        489 QRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAI-NRPGPALIHVRI  542 (564)
T ss_pred             CCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                  11 34789999999999999996  8999999999998 468999999975

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=99.86  E-value=1.6e-21  Score=173.25  Aligned_cols=121  Identities=23%  Similarity=0.179  Sum_probs=101.4

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc-----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT-----  123 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~-----  123 (176)
                      ..++|+||+++|.|+|++++.+     +++|||++|||+|+++...++++||+++++|+++||+||++|++....     
T Consensus       426 ~~~~gsmG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~  500 (569)
T PRK08327        426 DGSAGGLGWALGAALGAKLATP-----DRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVY  500 (569)
T ss_pred             CCCCCCCCcchHHHHHHhhcCC-----CCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhC
Confidence            3467999999999999999875     789999999999998754446999999999999999999999975321     


Q ss_pred             ------------cccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeeeC
Q psy786          124 ------------SLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGCC  176 (176)
Q Consensus       124 ------------~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~~  176 (176)
                                  .... +.+||.+++++||+++++|+  +++++.+++++|++.   .++|+|||+.+.
T Consensus       501 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~  567 (569)
T PRK08327        501 PEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD  567 (569)
T ss_pred             cccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence                        0111 45799999999999999997  999999999999853   168999999863

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=99.86  E-value=9.9e-22  Score=175.07  Aligned_cols=117  Identities=18%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|+++  .++|.||+++++|+++||+||++|++....+.    
T Consensus       432 ~~~g~mG~glp~aiGa~la~p-----~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~  504 (588)
T PRK07525        432 GSFGNCGYAFPAIIGAKIACP-----DRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYN  504 (588)
T ss_pred             ccccccccHHHHHHHHHHhCC-----CCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhC
Confidence            467999999999999999986     7899999999999975  45699999999999999999999987532111    


Q ss_pred             ------cc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786          126 ------QH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~  175 (176)
                            .. ..+||.+++++||+++++|+  ++++|.++++++++.  .++|+|||+.+
T Consensus       505 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~  561 (588)
T PRK07525        505 NRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMC  561 (588)
T ss_pred             CCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence                  11 23699999999999999996  899999999999864  35899999875

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=99.85  E-value=2.6e-21  Score=157.63  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=95.5

Q ss_pred             CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-----  126 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-----  126 (176)
                      .++||+++|.|+|+++|.+     +++||+++|||+|++ +...++.+|+++++|+++||+||+.|++.+.++..     
T Consensus        67 ~~~~G~alPaAiGaklA~P-----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g  140 (277)
T PRK09628         67 HTTHGRAVAYATGIKLANP-----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG  140 (277)
T ss_pred             eeccccHHHHHHHHHHHCC-----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence            3589999999999999987     789999999999964 23455888999999999999999999986533210     


Q ss_pred             -----------cccHHHHHHHhhcCceEE---EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 -----------HQTEVYRKRLDAFGFNAV---VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 -----------~~~~~~~~~a~a~G~~~~---~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                 .+..|+.++|+++|++++   +|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al-~~~Gp~lIeV~~  200 (277)
T PRK09628        141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGF-SHKGFSFFDVFS  200 (277)
T ss_pred             ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHH-hCCCCEEEEEcC
Confidence                       123478999999999985   564  8999999999998 578999999864

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=99.85  E-value=4.9e-21  Score=170.31  Aligned_cols=116  Identities=24%  Similarity=0.302  Sum_probs=99.5

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|++  ..++|+||+++++|+++||+||+.|++....+.    
T Consensus       434 ~g~gsmG~~l~~aiGa~la~~-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~  506 (578)
T PRK06112        434 RGLAGLGWGVPMAIGAKVARP-----GAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFG  506 (578)
T ss_pred             CCccccccHHHHHHHHHhhCC-----CCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccC
Confidence            356899999999999999876     789999999999985  567899999999999999999998886542211    


Q ss_pred             ------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .....||.++|++||+++++|+  +++++.+++++++ ..++|+|||+++
T Consensus       507 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~  559 (578)
T PRK06112        507 THTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM-AAPGPTLIEVIT  559 (578)
T ss_pred             CccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence                  1134689999999999999996  8999999999997 468999999986

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=99.85  E-value=1.1e-20  Score=173.16  Aligned_cols=171  Identities=13%  Similarity=0.045  Sum_probs=132.9

Q ss_pred             CCCCChHHHHHHHHcCCCCHHHHhhhhhcCCC-C---C----CCCCC-----C-----CC-ccccCCcccchhHHHHHHH
Q psy786            5 EIPFRTNRSKAWAEAGLFPVSELKNLRKIDSD-L---E----GHPTP-----R-----LN-FIDVGTGSLGQGLSVAAGM   65 (176)
Q Consensus         5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~-l---~----~~~~~-----~-----~~-~~~~~~g~~G~~l~~AvG~   65 (176)
                      -||||.-|....-.+|+-+.+.+..|...... .   .    .|...     .     +. .+....+.++...|+|+|.
T Consensus       248 gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~  327 (929)
T TIGR00239       248 GMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGS  327 (929)
T ss_pred             ccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhH
Confidence            37888888877777887666666566432111 1   0    11110     0     11 1233567899999999999


Q ss_pred             HHhchhcCCC-----cceEEEEECCCcc-CCchHHHHHHHhhhcCCCc--EEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           66 AYVGKYFDKA-----SYRTYCLVGDGES-AEGSIWEALHFASYYKLDN--LCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        66 A~a~~~~~~~-----~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~--liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      |+|.++..+.     +..+||+.|||++ .+|.++|+|++|+.|++|+  +++|+.||+|+++++.....+...+.++|+
T Consensus       328 ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak  407 (929)
T TIGR00239       328 TRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAK  407 (929)
T ss_pred             HHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHhe
Confidence            9998865332     5689999999997 7999999999999999996  689999999999997666666667888999


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +||++++.|||+|++++.++.+.|+++   -++|+|||+.|
T Consensus       408 ~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~t  448 (929)
T TIGR00239       408 MIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVG  448 (929)
T ss_pred             ecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence            999999999999999999999999874   35899999987

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>KOG1182|consensus

Probab=99.85  E-value=9e-22  Score=159.45  Aligned_cols=124  Identities=24%  Similarity=0.248  Sum_probs=111.9

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccH
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE  130 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~  130 (176)
                      -++++..++|.|+|+|++.|...+.++.+||++|||+..+|.++.++++|+..+.| ++|+|-||+|.|++++.++...+
T Consensus       191 issplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~P-vif~CRNNG~AISTptseQyr~D  269 (432)
T KOG1182|consen  191 ISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECP-VIFFCRNNGWAISTPTSEQYRGD  269 (432)
T ss_pred             ecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCC-EEEEEcCCCeeeccccHHHhcCC
Confidence            46788999999999999999655667899999999999999999999999999999 78999999999999999888777


Q ss_pred             HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      -++....+||+..++|||+|.-+++.|.++|.+.   .++|+|||+..
T Consensus       270 GIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamt  317 (432)
T KOG1182|consen  270 GIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMT  317 (432)
T ss_pred             ceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhh
Confidence            7777888999999999999999999999999753   46999999753

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=99.85  E-value=4.5e-21  Score=170.82  Aligned_cols=116  Identities=19%  Similarity=0.231  Sum_probs=99.1

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|++.  ..+|+||+++++|+++||+||++|++....+     
T Consensus       416 ~~~gsmG~~lpaaiGa~la~p-----~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~  488 (586)
T PRK06276        416 GGLGTMGFGFPAAIGAKVAKP-----DANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYG  488 (586)
T ss_pred             CCccccccchhHHHhhhhhcC-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhC
Confidence            356999999999999999876     6799999999999974  4679999999999999999999998753211     


Q ss_pred             -----ccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ... ..+||.+++++||.++++|+  +++||.+++++|+ ..++|.|||+.+
T Consensus       489 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  542 (586)
T PRK06276        489 KRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAI-KSGEPYLLDIII  542 (586)
T ss_pred             CCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 111 34799999999999999996  8999999999997 468999999975

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=99.85  E-value=6.6e-21  Score=167.90  Aligned_cols=116  Identities=28%  Similarity=0.333  Sum_probs=99.6

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------  123 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------  123 (176)
                      ..+|+||+++|.|+|++++.+     +++|+|++|||+|+|+  .++|+||.++++|++++|+||++|++....      
T Consensus       404 ~~~g~mG~~lp~aiGa~la~p-----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~  476 (530)
T PRK07092        404 MASGGLGYGLPAAVGVALAQP-----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGV  476 (530)
T ss_pred             cCCCcccchHHHHHHHHHhCC-----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCC
Confidence            346999999999999999876     6899999999999975  478999999999999999999999875321      


Q ss_pred             ----ccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 ----SLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 ----~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          .......||.+++++||+++++|+  +++++.+++++++ +.++|+|||+.+
T Consensus       477 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~~  529 (530)
T PRK07092        477 RDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL-AADGPVLVEVEV  529 (530)
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence                112245789999999999999997  8999999999997 578999999975

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=99.85  E-value=7.2e-21  Score=168.55  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=99.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      ..+|+||+++|.|+|++++.+     +++|||++|||+|++  ..++|+||+++++|+++||+||++|++....+     
T Consensus       412 ~~~g~mG~glpaaiGa~la~p-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~  484 (557)
T PRK08199        412 PTSGSMGYGLPAAIAAKLLFP-----ERTVVAFAGDGCFLM--NGQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYP  484 (557)
T ss_pred             CCCccccchHHHHHHHHHhCC-----CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcC
Confidence            457999999999999999876     789999999999996  45789999999999999999999998653211     


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           .....+||.+++++||+++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       485 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~li~v~~  537 (557)
T PRK08199        485 GRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL-ASGKPALIEIRI  537 (557)
T ss_pred             CccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11234699999999999999997  8999999999997 478999999875

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=99.84  E-value=2.6e-20  Score=171.19  Aligned_cols=169  Identities=15%  Similarity=0.144  Sum_probs=130.7

Q ss_pred             CCCChHHHHHHHHcCCCCHHHHhhhhhcC--------CCCC---CCCC----C-C-CCc-cccCCcccchhHHHHHHHHH
Q psy786            6 IPFRTNRSKAWAEAGLFPVSELKNLRKID--------SDLE---GHPT----P-R-LNF-IDVGTGSLGQGLSVAAGMAY   67 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~--------~~l~---~~~~----~-~-~~~-~~~~~g~~G~~l~~AvG~A~   67 (176)
                      |+||.-++.....+|+-+++.+..|....        ....   |+..    . . ++. .....+.+|...|+|+|.|+
T Consensus       249 maHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~  328 (924)
T PRK09404        249 MAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVR  328 (924)
T ss_pred             cCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHH
Confidence            67888888877778977666666663221        0011   1111    0 0 110 01124678999999999999


Q ss_pred             hchhcCCCc------ceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           68 VGKYFDKAS------YRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        68 a~~~~~~~~------~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      |.++.+ .+      ..+|++.|||++ .+|.++|+|++|+.|++|  -+++||.||+|+++++.....+...+.++|++
T Consensus       329 A~q~~~-~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~  407 (924)
T PRK09404        329 ARQDRR-GDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKM  407 (924)
T ss_pred             HHHHhc-CCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHee
Confidence            998643 34      689999999998 799999999999999997  46788888999999988777666778899999


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhhC---CCcEEEEeee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQKA---IGCVWIQRGC  175 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~~---~~P~lI~~~~  175 (176)
                      ||+++++|||+|++++.++.+.|+++.   ++|+|||+.|
T Consensus       408 ~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~t  447 (924)
T PRK09404        408 VQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVC  447 (924)
T ss_pred             cCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEE
Confidence            999999999999999999999998743   6899999976

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=99.84  E-value=8.4e-20  Score=160.36  Aligned_cols=140  Identities=25%  Similarity=0.289  Sum_probs=122.0

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CC-ccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LN-FIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~-~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      +|++||...+.|+++.|+|.+||+.  |.+++++|+|+ +| ++++.++|||-+...|+-.|...||+      +.++++
T Consensus       144 SPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~  223 (887)
T COG2609         144 SPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQK  223 (887)
T ss_pred             CchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCe
Confidence            6889999999999999999999987  45799999987 44 78899999999999999999999887      346789


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEe-cC
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVV-DG  148 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~v-dG  148 (176)
                      |+||.|||++.++...+++..|++++|.|++||+|+|....+++..... ...+++.++++.||++++| .|
T Consensus       224 v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg  295 (887)
T COG2609         224 VWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWG  295 (887)
T ss_pred             EEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEec
Confidence            9999999999999999999999999999999999999999988765431 2356788888888888866 44

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=99.84  E-value=7.4e-21  Score=168.47  Aligned_cols=116  Identities=21%  Similarity=0.267  Sum_probs=98.7

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc------
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT------  123 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~------  123 (176)
                      .++|+||+++|.|+|++++.+     +++||+++|||+|++.  .++|+||+++++|+++||+||++|++....      
T Consensus       409 ~~~g~mG~~l~aaiGa~la~~-----~~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~  481 (558)
T TIGR00118       409 GGLGTMGFGLPAAIGAKVAKP-----ESTVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNRYLGMVRQWQELFYE  481 (558)
T ss_pred             CccccccchhhHHHhhhhhCC-----CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcC
Confidence            456999999999999999876     6899999999999974  356999999999999999999999865311      


Q ss_pred             ----c-cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 ----S-LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 ----~-~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          . ...+.+||.+++++||+++++|+  +.+++.+++++++ ..++|+|||+.+
T Consensus       482 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~~p~liev~~  535 (558)
T TIGR00118       482 ERYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEAL-SSNEPVLLDVVV  535 (558)
T ss_pred             CceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                0 11124799999999999999997  7999999999998 468999999975

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=99.84  E-value=1.3e-20  Score=167.29  Aligned_cols=116  Identities=17%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc-------
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE-------  121 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~-------  121 (176)
                      ...+|+||+++|.|+|++++.      +++||+++|||+|+|  ..++|+||+++++|+++||+||++|....       
T Consensus       420 ~~~~gsmG~glpaaiGa~la~------~~~vv~i~GDG~f~m--~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~  491 (569)
T PRK09259        420 CGTWGVMGIGMGYAIAAAVET------GKPVVAIEGDSAFGF--SGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGA  491 (569)
T ss_pred             CCCCccccccHHHHHHHHhcC------CCcEEEEecCccccc--cHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcC
Confidence            346799999999999999983      578999999999997  44669999999999999999999862110       


Q ss_pred             -C-cccc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          122 -P-TSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       122 -~-~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                       . .... .+.+||.++|++||+++++|+  ++++|.+++++|+ ..++|+|||+.+
T Consensus       492 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~i  545 (569)
T PRK09259        492 GDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAI-ASGKPTLINVVI  545 (569)
T ss_pred             CCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence             0 0011 135799999999999999996  8999999999998 478999999975

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=99.84  E-value=1.7e-20  Score=154.46  Aligned_cols=116  Identities=16%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-----  125 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-----  125 (176)
                      .++||+++|+|+|+++|++     +++||++.|||++ ++|  .++|.+|+++++|+++||+||+.|++.+.+..     
T Consensus        69 ~g~mG~alpaAiGaklA~p-----d~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~  141 (301)
T PRK05778         69 HTLHGRAIAFATGAKLANP-----DLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPE  141 (301)
T ss_pred             chhhccHHHHHHHHHHHCC-----CCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCC
Confidence            4889999999999999987     7899999999997 454  45699999999999999999999998764321     


Q ss_pred             -----------ccccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----------QHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----------~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                 .....|+.++|+++|+.++ +....+++++.+++++|+ ..++|+|||+.+
T Consensus       142 g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~-~~~GpalIeV~~  202 (301)
T PRK05778        142 GSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAI-SHKGFAFIDVLS  202 (301)
T ss_pred             CcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHH-hCCCCEEEEEcC
Confidence                       0124699999999999987 323348999999999998 578999999864

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=99.83  E-value=9.5e-21  Score=168.06  Aligned_cols=115  Identities=17%  Similarity=0.103  Sum_probs=97.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc----cc
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT----SL  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~----~~  125 (176)
                      .+.++||+++|.|+|++++ +     +++|||++|||+|++.  .++|+|++++++|+++||+||++|++....    +.
T Consensus       422 ~g~~~~G~~lpaaiGaala-~-----~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~  493 (568)
T PRK07449        422 RGASGIDGLLSTAAGVARA-S-----AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE  493 (568)
T ss_pred             CCccchhhHHHHHHHHHhc-C-----CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence            3568899999999999998 5     6789999999999974  356999999999999999999999853211    10


Q ss_pred             --------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 --------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 --------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                              ....+||+++|++||+++++|+  +++||.+++++|+ ..++|+|||+++
T Consensus       494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~-~~~~p~lIev~i  548 (568)
T PRK07449        494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL-PTPGLTVIEVKT  548 (568)
T ss_pred             chhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh-cCCCCEEEEEeC
Confidence                    1134799999999999999996  8999999999997 578999999986

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.82  E-value=5e-20  Score=150.14  Aligned_cols=118  Identities=13%  Similarity=-0.008  Sum_probs=97.2

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-----  125 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-----  125 (176)
                      ..+.||+++|.|+|++++++     +++||+++|||++++ ...++|.+|+++++|+++||+||+.|++.+.+..     
T Consensus        58 ~~~~mG~alp~AiGaklA~p-----d~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~  131 (280)
T PRK11869         58 FHTLHGRAIPAATAVKATNP-----ELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK  131 (280)
T ss_pred             CCcccccHHHHHHHHHHHCC-----CCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence            45679999999999999976     789999999999874 2245699999999999999999999997653321     


Q ss_pred             -----------ccccHHHHHHHhhcCceEEEe-cCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----------QHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----------~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                 ...+.|+.++|+++|++++.. .-.+++++.+++++|+ ..++|+|||+.+
T Consensus       132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al-~~~Gp~lIeV~~  192 (280)
T PRK11869        132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAI-KHKGLAIVDIFQ  192 (280)
T ss_pred             CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                       112359999999999998862 2358999999999998 578999999863

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.82  E-value=2.1e-19  Score=156.48  Aligned_cols=166  Identities=25%  Similarity=0.338  Sum_probs=132.7

Q ss_pred             CCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceEE
Q psy786            4 NEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRTY   80 (176)
Q Consensus         4 ~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv   80 (176)
                      |.+-|++.  -|+...++|+  +|++.+.|+.+ +++|++.+..+-.+ +..|.-+.++++|+|+|.|... .+.++.||
T Consensus        66 D~~IwDVgHQaYpHKiLTGR--~e~f~tlRq~~-GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~-~g~~~~vv  141 (627)
T COG1154          66 DKLIWDVGHQAYPHKILTGR--REQFDTLRQKD-GLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDL-KGEDRNVV  141 (627)
T ss_pred             CCeEEecCcccchhHHhcCc--hhhcchhhhcC-CCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHh-cCCCCcEE
Confidence            33445555  6899999997  58999999997 69999998755444 5889999999999999999875 45678899


Q ss_pred             EEECCCccCCchHHHHHHHhh-hcCCCcEEEEEecCCCccccCcccc--------cc-----------------------
Q psy786           81 CLVGDGESAEGSIWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQ--------HQ-----------------------  128 (176)
Q Consensus        81 ~~~GDG~~~~G~~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~--------~~-----------------------  128 (176)
                      +++|||++.-||.+||||.|. ..+- +++||+|||..+|+.+....        .+                       
T Consensus       142 aVIGDGAlt~GmA~EALN~ag~~~~~-~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~  220 (627)
T COG1154         142 AVIGDGALTGGMAFEALNNAGADLKS-NLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKR  220 (627)
T ss_pred             EEECCccccchHHHHHHhhhhhccCC-CEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHH
Confidence            999999999999999999998 3334 48999999999998654210        00                       


Q ss_pred             -----cHHHH------HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          129 -----TEVYR------KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       129 -----~~~~~------~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ...+.      .+++.+|++++ .+||||.++|..+|+.+. ..++|+||++.+
T Consensus       221 ~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~k-d~~gPvllHv~T  278 (627)
T COG1154         221 FAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAK-DLKGPVLLHVVT  278 (627)
T ss_pred             HHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHh-cCCCCEEEEEEe
Confidence                 00111      27888999999 789999999999999995 578999999853

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.81  E-value=1.3e-19  Score=147.74  Aligned_cols=117  Identities=20%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC-ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc--
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG-ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--  127 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG-~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--  127 (176)
                      ..++||+++|+|+|+++|++     +++||+++||| +|++|  .++|.+|+++++|++++|+||+.|++.+.+....  
T Consensus        57 ~~~~~G~alp~A~GaklA~P-----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~  129 (279)
T PRK11866         57 IHGIHGRVLPIATGVKWANP-----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP  129 (279)
T ss_pred             cccccccHHHHHHHHHHHCC-----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence            46889999999999999987     78999999999 68876  3569999999999999999999999986443211  


Q ss_pred             --------------ccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          128 --------------QTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       128 --------------~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                    .+.|+.++|+++|+.++ +....+++++.+++++|+ ..++|+|||+..
T Consensus       130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al-~~~Gps~I~v~~  191 (279)
T PRK11866        130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAI-KHKGFSFIDVLS  191 (279)
T ss_pred             CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                          11389999999999877 445569999999999998 578999999864

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.81  E-value=1.7e-19  Score=161.53  Aligned_cols=167  Identities=19%  Similarity=0.227  Sum_probs=134.3

Q ss_pred             CCCCCCChH--HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccc-cCCcccchhHHHHHHHHHhchhcCCCcceE
Q psy786            3 TNEIPFRTN--RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFID-VGTGSLGQGLSVAAGMAYVGKYFDKASYRT   79 (176)
Q Consensus         3 ~~~~~~~~~--~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~-~~~g~~G~~l~~AvG~A~a~~~~~~~~~~v   79 (176)
                      .|.+.||..  -|+...++|+  ++.+.. |+.+ ++.|+|.+...-.| ++.|.-+.++++|+|+|.|+.+ .+.++.|
T Consensus       140 ~DkiiwDvgHQ~Y~HKiLTGR--~~~f~~-Rq~~-GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl-~g~~~~v  214 (701)
T PLN02225        140 VDNILWDAVEQTYAHKVLTRR--WSAIPS-RQKN-GISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDI-KGKRDRV  214 (701)
T ss_pred             CCceeeccccccchhhHhcCC--hhhcCc-cccC-CcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCCcE
Confidence            467778887  8999999997  477765 9996 69999998755455 5889999999999999999886 4456789


Q ss_pred             EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--------cccc-------------------------
Q psy786           80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--------TSLQ-------------------------  126 (176)
Q Consensus        80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--------~~~~-------------------------  126 (176)
                      |+++|||++.-|+.+|+|+-|...+-+ ++||+|||.++|+.+        ....                         
T Consensus       215 vaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~  293 (701)
T PLN02225        215 VAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTK  293 (701)
T ss_pred             EEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            999999999999999999999998866 899999999999877        2100                         


Q ss_pred             -cc--cHHH---------------H-HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhC-CCcEEEEeee
Q psy786          127 -HQ--TEVY---------------R-KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKA-IGCVWIQRGC  175 (176)
Q Consensus       127 -~~--~~~~---------------~-~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~-~~P~lI~~~~  175 (176)
                       .+  ...+               . .+++.+|++++ .|||||.++|.++++++.+.. ++|+|||+..
T Consensus       294 ~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T  363 (701)
T PLN02225        294 RIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVIT  363 (701)
T ss_pred             hCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEe
Confidence             00  0000               1 36788999999 889999999999999985321 4999999853

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=99.81  E-value=2.1e-19  Score=146.91  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=93.5

Q ss_pred             CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH---  127 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~---  127 (176)
                      .+.||+++|+|+|+++|++     +++|||++|||++. +|  .++|.+|+++++|++++|+||+.|++.+.++...   
T Consensus        52 ~t~mG~alPaAiGaklA~P-----d~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~  124 (287)
T TIGR02177        52 HGLHGRALPVATGIKLANP-----HLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK  124 (287)
T ss_pred             ccccccHHHHHHHHHHHCC-----CCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence            3568999999999999987     78999999999974 54  4569999999999999999999999876443200   


Q ss_pred             ---------------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          128 ---------------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       128 ---------------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                     ..+++..+++++|+.....- .+++++.+++++|+ ..++|+|||+..
T Consensus       125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al-~~~GpslIeV~~  185 (287)
T TIGR02177       125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAI-NHKGYALVDILQ  185 (287)
T ss_pred             CcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                           13467788888887766522 48999999999998 578999999863

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=99.81  E-value=2.1e-19  Score=147.19  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             cccchhHHHHHHHHHhchhcCCCcceEEEEECCCc-cCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-----
Q psy786           53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGE-SAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-----  126 (176)
Q Consensus        53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~-~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-----  126 (176)
                      ++||+++|+|+|+++|++     +++||+++|||+ |++|  .++|.+|+++++|+++||+||+.|++.+.+...     
T Consensus        69 g~mG~alpaAiGaklA~P-----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g  141 (286)
T PRK11867         69 TIHGRALAIATGLKLANP-----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG  141 (286)
T ss_pred             hhhhcHHHHHHHHHHhCC-----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence            899999999999999986     789999999996 8875  356999999999999999999999987643210     


Q ss_pred             -----------cccHHHHHHHhhcCceEEE-ecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 -----------HQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 -----------~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                 ..+.|+.++|+++|...+. +...+++++.+++++|+ +.++|+|||+..
T Consensus       142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al-~~~Gp~lIev~~  201 (286)
T PRK11867        142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAI-NHKGFSFVEILQ  201 (286)
T ss_pred             cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                       0125789999999998773 33358999999999998 578999999863

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.79  E-value=6.3e-19  Score=157.34  Aligned_cols=156  Identities=21%  Similarity=0.156  Sum_probs=113.6

Q ss_pred             CCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786            6 IPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD   85 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD   85 (176)
                      =||++.++++.....   .+.+ -..+.|+...+...|. ..+ ..+++||+++|.|+|++++.+     +++||+++||
T Consensus       362 Cp~~~~~~~l~~~l~---~d~i-vv~D~G~~~~~~~~p~-~~~-~~~~~mG~~~~~AiGa~~a~p-----~~~Vv~i~GD  430 (595)
T TIGR03336       362 CPHRATFYAMKKVAD---REAI-FPSDIGCYTLGIQPPL-GTV-DTTLCMGASIGVASGLSKAGE-----KQRIVAFIGD  430 (595)
T ss_pred             CCChHHHHHHHHhcc---CCcE-EecCcchhhccccCCc-ccc-ceeeccCchHHHHhhhhhcCC-----CCCEEEEecc
Confidence            488888777766663   3322 1233342221111111 112 235899999999999999876     6899999999


Q ss_pred             CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------cccHHHHHHHhhcCceEEEec-CCCHHHH
Q psy786           86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------HQTEVYRKRLDAFGFNAVVVD-GHDVEHL  154 (176)
Q Consensus        86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------~~~~~~~~~a~a~G~~~~~vd-G~d~~~l  154 (176)
                      |+|++.. .++|.+|.++++|++++|+||+.|++.+.++..          ....||+++++++|+++++|. -.+.+++
T Consensus       431 G~f~~~g-~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l  509 (595)
T TIGR03336       431 STFFHTG-IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKET  509 (595)
T ss_pred             chhhhcC-HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHH
Confidence            9999631 456999999999999999999999987644221          124689999999999999884 3456788


Q ss_pred             HHHHHHHHhhCCCcEEEEee
Q psy786          155 VKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       155 ~~al~~a~~~~~~P~lI~~~  174 (176)
                      .+++++++ ..++|.+|+++
T Consensus       510 ~~al~~a~-~~~gp~li~v~  528 (595)
T TIGR03336       510 IEVFKAAL-AAEGVSVIIAK  528 (595)
T ss_pred             HHHHHHHH-hcCCCEEEEEc
Confidence            99999997 46899999885

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>KOG1185|consensus

Probab=99.71  E-value=1e-16  Score=136.44  Aligned_cols=117  Identities=23%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCcc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPTS----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~~----  124 (176)
                      .++|+||-|++.|+++|++.+     +++|+|+-||++|... .+ ++.|++|||||++++|+|||+. +.+....    
T Consensus       427 GtfgTMGVG~Gfalaaa~~~P-----~~~V~~veGDsaFGfS-aM-E~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~  499 (571)
T KOG1185|consen  427 GTFGTMGVGLGFALAAALAAP-----DRKVVCVEGDSAFGFS-AM-ELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS  499 (571)
T ss_pred             ccccccccchhHHHHHHhhCC-----CCeEEEEecCcccCcc-hh-hHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence            378999999999999999886     7899999999999863 34 5999999999999999988874 4332211    


Q ss_pred             -----------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                 ......+|.+++++||.+++.|+  ++++|.++++++.+..++|++|.+.+
T Consensus       500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~~~~psvINVlI  559 (571)
T KOG1185|consen  500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQDTDKPSVINVLI  559 (571)
T ss_pred             hcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence                       01234689999999999999997  99999999999997677999998754

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=99.71  E-value=3.8e-17  Score=140.24  Aligned_cols=120  Identities=17%  Similarity=0.126  Sum_probs=99.9

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--  125 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--  125 (176)
                      .+.-||++||.+|+|+|+++|.+     +|++|.++|||++|+  ..+++.+..|++|+.++||+||++|.+++....  
T Consensus       406 ~Q~lWGSIG~t~pAalGa~~A~~-----drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~  478 (557)
T COG3961         406 SQPLWGSIGYTLPAALGAALAAP-----DRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPT  478 (557)
T ss_pred             cccchhhcccccHhhhhhhhcCC-----CccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCC
Confidence            45689999999999999999998     799999999999995  667799999999999999999999998764432  


Q ss_pred             ----ccccHHHHHHHhhcCceEEEe--cCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          126 ----QHQTEVYRKRLDAFGFNAVVV--DGHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       126 ----~~~~~~~~~~a~a~G~~~~~v--dG~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                          .-..+||.++.++||..-.+.  .-...+++..+++.+.+..+++.+||+.
T Consensus       479 ~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~lIEv~  533 (557)
T COG3961         479 APYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFANNDRIRLIEVM  533 (557)
T ss_pred             cCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhcCCCceEEEEEe
Confidence                123479999999998653321  2247889999999998667799999986

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=99.70  E-value=4.9e-17  Score=158.39  Aligned_cols=116  Identities=16%  Similarity=0.026  Sum_probs=97.3

Q ss_pred             ccCCcccch--hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc--CCCcEEEEEecCCCccccCc-
Q psy786           49 DVGTGSLGQ--GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY--KLDNLCVIFDINRLGQSEPT-  123 (176)
Q Consensus        49 ~~~~g~~G~--~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~--~lp~liiV~~nn~~~~~~~~-  123 (176)
                      ....|+||+  ++|.|+|++++.      +++|+|++|||+|++  ..++|.||+++  ++|+++||+||++|++.... 
T Consensus       755 ~~~~G~mG~~G~lpaAIGaala~------~r~Vv~i~GDGsF~m--~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~  826 (1655)
T PLN02980        755 AGNRGASGIDGLLSTAIGFAVGC------NKRVLCVVGDISFLH--DTNGLSILSQRIARKPMTILVINNHGGAIFSLLP  826 (1655)
T ss_pred             EecCCccchhhhHHHHHHHhhcC------CCCEEEEEehHHHHh--hhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCc
Confidence            346799999  599999999875      468999999999996  45679999985  99999999999998875421 


Q ss_pred             -----c-c---c----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 -----S-L---Q----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 -----~-~---~----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           + .   .    ...+||.++|++||+++.+|+  ++++|.+++++|+ ..++|+|||+.+
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~-~~~~p~lIEV~t  888 (1655)
T PLN02980        827 IAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ-VEQMDCVVEVES  888 (1655)
T ss_pred             cCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh-ccCCCEEEEEec
Confidence                 1 0   0    124689999999999999996  8999999999997 568999999986

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.68  E-value=9.4e-16  Score=125.91  Aligned_cols=126  Identities=16%  Similarity=0.098  Sum_probs=100.5

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--  125 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--  125 (176)
                      ++....++|.+++.|.|++++.+.++.++..|++++|||++..+.+ |+|+.|..+++|++++|.||..|.+.+.+..  
T Consensus        64 ~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~  142 (300)
T PRK11864         64 VPVLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSS  142 (300)
T ss_pred             ccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCC
Confidence            3334688999999999999998765545566777999999987654 9999999999997777777666666554321  


Q ss_pred             --------------ccccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 --------------QHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 --------------~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                    .....|+.++++++|..++ +++-.++.++.+++++|+ ..+||.+|++..
T Consensus       143 Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~-~~~Gps~I~~~s  206 (300)
T PRK11864        143 TPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAK-EIRGFKFIHLLA  206 (300)
T ss_pred             CcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence                          1123588999999999888 677789999999999998 578999999863

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=99.68  E-value=2.8e-16  Score=133.46  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=101.3

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      ++.+.++|||-++.++|++++.+     ++.|++++||||++|  ...+|.|+..++..++++++||.+|+...+.+   
T Consensus       439 ~EYgfSCMGYEiaG~lG~K~a~p-----dreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~  511 (617)
T COG3962         439 LEYGFSCMGYEIAGGLGAKAAEP-----DREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMAT  511 (617)
T ss_pred             eeecccccccccccccccccCCC-----CCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhc
Confidence            56688999999999999997665     789999999999996  56679999999999999999999999764321   


Q ss_pred             ---------------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ---------------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ---------------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                     ......||++.|++||.+.++|.  +.++|++||++|. .+.+++||+++.
T Consensus       512 Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak-~~~~ttvi~I~t  574 (617)
T COG3962         512 GGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAK-ASDRTTVIVIDT  574 (617)
T ss_pred             CcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHH-hCCCCEEEEEec
Confidence                           12345799999999999999996  9999999999995 678999998864

>KOG4166|consensus

Probab=99.63  E-value=2.1e-16  Score=133.20  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=102.7

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-  126 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-  126 (176)
                      ...+.|+||+++|+|+|+..|++     +..||-+-||+||.|  ..++|.++.+.++|+.++|+||...+|.++++.. 
T Consensus       519 tSGGLGtMGfGLPAAIGAsVA~P-----~~iViDIDGDaSF~M--t~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lF  591 (675)
T KOG4166|consen  519 TSGGLGTMGFGLPAAIGASVANP-----DAIVIDIDGDASFIM--TVQELATIRQENLPVKILILNNEEQGMVTQWQDLF  591 (675)
T ss_pred             ecCCccccccCcchhhcccccCc-----ccEEEeccCCceeee--ehHhhhhhhhcCCceEEEEecchhhhhHHHHHHHH
Confidence            34578999999999999999987     789999999999986  4556999999999999999999999998776432 


Q ss_pred             ---------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 ---------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 ---------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                               ..++++.++|+++|++..+|.  ..++|++.+++-+ ..+||+|+|+-|
T Consensus       592 Ye~rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefl-sTkGPvLleV~v  646 (675)
T KOG4166|consen  592 YEARYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFL-STKGPVLLEVIV  646 (675)
T ss_pred             HHhhhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHh-CCCCCeEEEEEc
Confidence                     235799999999999999995  7899999999987 578999999865

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.55  E-value=9.4e-14  Score=114.18  Aligned_cols=162  Identities=14%  Similarity=0.033  Sum_probs=119.9

Q ss_pred             CCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCC-CCCCCCC-ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEEC
Q psy786            7 PFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEG-HPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVG   84 (176)
Q Consensus         7 ~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~-~~~~~~~-~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~G   84 (176)
                      +++.+++.++.+.|    +++--....||.--+ ..-|..| .+....+.+|.+.+.|.|++.+.+.++ ++..||++.|
T Consensus        25 g~~~~~~~l~~a~g----~~~vi~~~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~-~~~~Vv~~~G   99 (299)
T PRK11865         25 GAAIAMRLALKALG----KNTVIVVATGCLEVITTPYPETAWNVPWIHVAFENAAAVASGIERAVKALG-KKVNVVAIGG   99 (299)
T ss_pred             CcHHHHHHHHHHcC----CCEEEEeCCCcccccCccCcCCccccccchhhhcchHHHHHHHHHHHHHhc-CCCeEEEEeC
Confidence            56778888888876    222223556653322 1122222 344567889999999999999976432 3568999999


Q ss_pred             CCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---------------------cccHHHHHHHhhcCceE
Q psy786           85 DGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---------------------HQTEVYRKRLDAFGFNA  143 (176)
Q Consensus        85 DG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---------------------~~~~~~~~~a~a~G~~~  143 (176)
                      ||++..- -.++|.-|.+.+.+++++|+||..|++.+.+...                     .+..|+..++.++|..+
T Consensus       100 DG~~~dI-G~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~Y  178 (299)
T PRK11865        100 DGGTADI-GFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPY  178 (299)
T ss_pred             CchHhhc-cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCE
Confidence            9998542 3478999999999999999999999987654321                     12468899999999998


Q ss_pred             E-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          144 V-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       144 ~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      + +++-.++.++.+++++|+ ..+||.||++..
T Consensus       179 VA~~~~~~~~~l~~~i~~A~-~~~Gps~I~v~s  210 (299)
T PRK11865        179 VATASIGYPEDFMEKVKKAK-EVEGPAYIQVLQ  210 (299)
T ss_pred             EEEEeCCCHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence            8 566679999999999997 578999999863

>KOG1184|consensus

Probab=99.49  E-value=1.3e-13  Score=118.34  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-
Q psy786           47 FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-  125 (176)
Q Consensus        47 ~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-  125 (176)
                      .....+|++|+.+|+++|+++|.+     +++||.++|||+||+  ..++++++.||+||.++|++||++|.++..... 
T Consensus       409 ~~q~~wgsIG~svga~lG~a~a~~-----e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~  481 (561)
T KOG1184|consen  409 ESQMQWGSIGWSVGATLGYAQAAP-----EKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDG  481 (561)
T ss_pred             EEEEEEeeccccchhhhhhhhccC-----CceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCC
Confidence            355689999999999999999987     689999999999996  556699999999999999999999998754332 


Q ss_pred             ---ccccHHHHHHHhhcCceE-----EEecCCCHHHHHHHHHHHH-hhCCCcEEEEee
Q psy786          126 ---QHQTEVYRKRLDAFGFNA-----VVVDGHDVEHLVKVSSFKL-QKAIGCVWIQRG  174 (176)
Q Consensus       126 ---~~~~~~~~~~a~a~G~~~-----~~vdG~d~~~l~~al~~a~-~~~~~P~lI~~~  174 (176)
                         ....+||..+.++||..-     .++  ..-+|+.++.+.+. +..+++.+||+.
T Consensus       482 ~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~~~~~i~liEv~  537 (561)
T KOG1184|consen  482 PYNDIQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFEKNDKIRLIEVI  537 (561)
T ss_pred             CccccccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhcccCceEEEEEe
Confidence               122479999999997543     334  35678888888887 345789999985

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=99.45  E-value=1.1e-12  Score=109.02  Aligned_cols=125  Identities=23%  Similarity=0.371  Sum_probs=84.2

Q ss_pred             hhcC--CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc-C---
Q psy786           31 RKID--SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY-K---  104 (176)
Q Consensus        31 r~~~--~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~-~---  104 (176)
                      |++.  .++++|..|.+|+.-...|-+|++++.|.|+++-++     |..|+|++|||++.+|... +-+.+.++ +   
T Consensus       116 ~~FS~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~DnP-----dliv~~vvGDGEaETGplA-~sWh~~kflnP~~  189 (379)
T PF09364_consen  116 RQFSFPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVFDNP-----DLIVACVVGDGEAETGPLA-ASWHSNKFLNPAT  189 (379)
T ss_dssp             HHBTSTTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHTT-T-----T-EEEEEEETTGGGSHHHH-HHGGGGGSS-TTT
T ss_pred             HhCCCCCCCccccCcCCCCccCcCcchhhHHHHHhhcccCCC-----CeEEEEEecCCcccCCccc-ccccccceeCccc
Confidence            5553  578999999999988889999999999999999766     8899999999999987533 34444433 2   


Q ss_pred             CCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Q psy786          105 LDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFK  161 (176)
Q Consensus       105 lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a  161 (176)
                      -..|+-|+.=|+|.|+.++-.. .+..++.++++++|++.+.|+|+|++++...+..+
T Consensus       190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~a  247 (379)
T PF09364_consen  190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAA  247 (379)
T ss_dssp             S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHH
T ss_pred             CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHH
Confidence            2345556667999999887532 34567999999999999999999988776655444

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=99.25  E-value=5.9e-12  Score=104.12  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=92.7

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH---  127 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~---  127 (176)
                      ..|++||.+|+|+|+..+.+     ++.++++.||-.||.  ..|+|...+++|+|-+.+++||..++...+.+..+   
T Consensus       417 qagplgwtipaalgv~~adp-----~r~vvalsgdydfqf--mieelavgaq~k~pyihv~vnnaylglirqaqr~f~md  489 (592)
T COG3960         417 QAGPLGWTIPAALGVCAADP-----KRNVVAISGDYDFQF--LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMD  489 (592)
T ss_pred             ccCCcccccchhhceeecCC-----CCceEEeecCchHHH--HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCcc
Confidence            57999999999999998876     788999999999994  78899999999999888888877667654432211   


Q ss_pred             -----------------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          128 -----------------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       128 -----------------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                                       -..|-.+.++++|++.++|.  +++++..|+++|..   +++.|+++|+
T Consensus       490 y~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~  553 (592)
T COG3960         490 YCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEV  553 (592)
T ss_pred             ceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeeh
Confidence                             01345678999999999995  89999999999853   4688999985

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=99.23  E-value=3.8e-11  Score=105.71  Aligned_cols=159  Identities=23%  Similarity=0.251  Sum_probs=117.3

Q ss_pred             CCCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEEC
Q psy786            5 EIPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVG   84 (176)
Q Consensus         5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~G   84 (176)
                      .-||++.+|+.......+...   ...++||..-+...| ....+ ++-.||.++++|-|++++..      +++++++|
T Consensus       385 GCPHr~sf~~~k~~~~~~~~~---~~~DIGCytlg~~~P-~~~~d-~t~~mGssig~a~g~~~~~~------k~~va~iG  453 (640)
T COG4231         385 GCPHRPSFYALKKAAAELGGH---PSGDIGCYTLGILPP-LNTVD-TTTMMGSSIGIAGGLSFAST------KKIVAVIG  453 (640)
T ss_pred             CCCCchhhHHHHHHHHhhCCC---CCCCcceeecccCCC-cchhh-hhhhccchhhhccccccccC------CceEEEec
Confidence            359999999988776322111   135678766666443 11233 35578998999999887653      68999999


Q ss_pred             CCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------cccHHHHHHHhhcCceEEE-ecCCCHHH
Q psy786           85 DGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------HQTEVYRKRLDAFGFNAVV-VDGHDVEH  153 (176)
Q Consensus        85 DG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------~~~~~~~~~a~a~G~~~~~-vdG~d~~~  153 (176)
                      |+.|.... ..+|.-|+..+.+++++|+||..-+|.+++...          ....++.++.+++|...++ +|-.|.++
T Consensus       454 DsTF~HsG-i~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~  532 (640)
T COG4231         454 DSTFFHSG-ILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKE  532 (640)
T ss_pred             cccccccC-cHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHH
Confidence            99997543 346999999999999999998888888877543          2345788999999999885 57789999


Q ss_pred             HHHHHHHHHhhCCCcEEEE-eeeC
Q psy786          154 LVKVSSFKLQKAIGCVWIQ-RGCC  176 (176)
Q Consensus       154 l~~al~~a~~~~~~P~lI~-~~~~  176 (176)
                      +.+++++|++ ..+|.+|- .+.|
T Consensus       533 ~~~~~keale-~~gpsViiak~~C  555 (640)
T COG4231         533 LSEAIKEALE-VPGPSVIIAKREC  555 (640)
T ss_pred             HHHHHHHHhc-CCCceEEEEcCcc
Confidence            9999999984 66776554 4444

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=99.15  E-value=4.5e-10  Score=92.48  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=93.5

Q ss_pred             CcccchhHHHHHHHHHhchhcCCCcceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc---
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH---  127 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~---  127 (176)
                      .+..|-+.+.|.|+.+|++     +..||++.|||.. ..|  ...+.-+.+.+.+++++++||.-|+.++.+....   
T Consensus        69 hs~~gra~a~atGik~A~~-----~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~  141 (294)
T COG1013          69 HSLHGRAAAVATGIKLANP-----ALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK  141 (294)
T ss_pred             eeccCcchhhHHHHHHhcc-----CCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence            4667999999999999998     5689999999965 555  3458899999999999999999999876543211   


Q ss_pred             --------------ccHHHHHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          128 --------------QTEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       128 --------------~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                                    ...|...++-++|..++ ++.-.++.++.+.+++|+ +.+||.||++
T Consensus       142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~-~~~Gps~I~v  201 (294)
T COG1013         142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA-EHKGPSFIDV  201 (294)
T ss_pred             CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH-hccCCeEEEE
Confidence                          23488899999999888 664457999999999998 5679999997

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.14  E-value=3.8e-10  Score=103.60  Aligned_cols=123  Identities=20%  Similarity=0.180  Sum_probs=98.8

Q ss_pred             cccchhHHHHHHHHHhchhc-CC----CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcc
Q psy786           53 GSLGQGLSVAAGMAYVGKYF-DK----ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTS  124 (176)
Q Consensus        53 g~~G~~l~~AvG~A~a~~~~-~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~  124 (176)
                      +.+-.--|+.-|+..|.+-. +.    -....|++.||++| .+|.+.|.|+++..++++  -+|+|+.||++++.+...
T Consensus       619 SHLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~  698 (1228)
T PRK12270        619 SHLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPE  698 (1228)
T ss_pred             hhhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCcc
Confidence            44555567778888775421 11    23457889999997 699999999999999988  366777789999998876


Q ss_pred             cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      ...+.....+++++++++++.|||+|++++.++.+.|++.   -++|++||+-|
T Consensus       699 ~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvc  752 (1228)
T PRK12270        699 SSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVC  752 (1228)
T ss_pred             ccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            6665556678899999999999999999999999999873   37999999987

>KOG0451|consensus

Probab=99.04  E-value=1.8e-09  Score=94.10  Aligned_cols=124  Identities=16%  Similarity=0.219  Sum_probs=97.4

Q ss_pred             CcccchhHHHHHHHHHhchhcC-------------CCcceEEEEECCCcc-CCchHHHHHHHhh--hcCCCcEEEEEecC
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFD-------------KASYRTYCLVGDGES-AEGSIWEALHFAS--YYKLDNLCVIFDIN  115 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~-------------~~~~~vv~~~GDG~~-~~G~~~eal~~a~--~~~lp~liiV~~nn  115 (176)
                      -+.+-..-|+|+|-+.+.....             ++....+.+.||++| .+|.++|+++++.  .+++.-.+.++.||
T Consensus       282 PSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNN  361 (913)
T KOG0451|consen  282 PSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNN  361 (913)
T ss_pred             hhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecc
Confidence            3556777789999887755321             011234556799999 5999999999876  45666667777889


Q ss_pred             CCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          116 RLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +.+..++.+...+.....+++++++.+++.|+|+||+++.+|-+-|+++   -++-+||+.-|
T Consensus       362 QvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~C  424 (913)
T KOG0451|consen  362 QVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNC  424 (913)
T ss_pred             cccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHH
Confidence            9999988877776666788999999999999999999999999999874   36899999876

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=99.00  E-value=3.2e-09  Score=94.50  Aligned_cols=121  Identities=24%  Similarity=0.377  Sum_probs=90.7

Q ss_pred             HHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhc--
Q psy786           26 ELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYY--  103 (176)
Q Consensus        26 ~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~--  103 (176)
                      .+.+|+.. .++.+|..|.+||.-...|.+|+++..|.|+++-++     |..+.|++|||+...|...- -+.+.++  
T Consensus       127 L~~qFs~P-gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d~P-----dli~~~vvGDGeaetgplat-sWhs~kf~n  199 (793)
T COG3957         127 LFKQFSFP-GGIGSHVAPETPGSIHEGGELGYALSHAYGAAFDNP-----DLIVACVVGDGEAETGPLAT-SWHSNKFLN  199 (793)
T ss_pred             HHHhccCC-CCcccccCCCCCCccCcCcchhHHHHHHHHhhcCCC-----CcEEEEEecccccccCcccc-ccccccccC
Confidence            33445544 479999999999987889999999999999999665     88999999999777654221 2222111  


Q ss_pred             --CCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEecCCCHHH
Q psy786          104 --KLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEH  153 (176)
Q Consensus       104 --~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~  153 (176)
                        +-..++-|+.-|+|.|+.++.... +..++.++++++|++.+.|+|+|+++
T Consensus       200 p~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d  252 (793)
T COG3957         200 PARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPAD  252 (793)
T ss_pred             ccccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHH
Confidence              222344455569999998876543 45679999999999999999988877

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=98.60  E-value=2.3e-07  Score=81.25  Aligned_cols=109  Identities=15%  Similarity=0.065  Sum_probs=84.9

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---------ccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---------SLQ  126 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---------~~~  126 (176)
                      -..++-|+|++.+..      ++++.++||=||..-.  ..|........|.+|||+|||+=+|-...         +..
T Consensus       425 DG~vSTA~Gi~~a~~------~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~  496 (566)
T COG1165         425 DGTVSTALGIARATQ------KPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL  496 (566)
T ss_pred             chhHHHHhhhhhhcC------CceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHh
Confidence            334778999999765      5799999999997533  34666788889999999999998774211         111


Q ss_pred             c---ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 H---QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 ~---~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      +   ...||+..++.||.++.+++  +.+++..+++.+. ...+-.+||++.
T Consensus       497 F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~-~~~g~~viEvkt  545 (566)
T COG1165         497 FGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAW-RRSGTTVIEVKT  545 (566)
T ss_pred             cCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhc-cCCCcEEEEEec
Confidence            1   13589999999999999986  8999999999985 456789999864

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes

Probab=98.55  E-value=5.6e-07  Score=75.81  Aligned_cols=95  Identities=13%  Similarity=0.034  Sum_probs=74.7

Q ss_pred             ceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----------------ccccHHHHHHHhhc
Q psy786           77 YRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----------------QHQTEVYRKRLDAF  139 (176)
Q Consensus        77 ~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----------------~~~~~~~~~~a~a~  139 (176)
                      ..||++.|||.. ..|.  +.+.-+.+.+.+++++|+||..|+..+.+..                .....|+..++.++
T Consensus       152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~  229 (365)
T cd03377         152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY  229 (365)
T ss_pred             cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence            589999999965 5553  4577778888889999999999998754321                11235888999999


Q ss_pred             CceEE-Eec-CCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          140 GFNAV-VVD-GHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       140 G~~~~-~vd-G~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      |..++ ++. +.++.++.+++++|+ +.+||.||++-
T Consensus       230 g~~YVA~~s~~~~~~~~~~~i~eA~-~~~Gps~I~v~  265 (365)
T cd03377         230 GNVYVAQIALGANDNQTLKAFREAE-AYDGPSLIIAY  265 (365)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHh-cCCCCEEEEEE
Confidence            99888 553 358999999999997 57999999974

This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=98.38  E-value=1.9e-06  Score=81.95  Aligned_cols=120  Identities=16%  Similarity=0.139  Sum_probs=88.8

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc--cc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--HQ  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--~~  128 (176)
                      +.-.||.....++|.+.+.+     ++.|+.++|||.|.... .-+|.-|...+.+++++|++|.--.|.+++...  .+
T Consensus       479 ~~~~MG~eg~~~~G~a~f~~-----~~hv~a~iGDgTffHSG-~~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~  552 (1165)
T PRK09193        479 TFTQMGGEGVPWIGQAPFTD-----EKHVFQNLGDGTYFHSG-LLAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS  552 (1165)
T ss_pred             eeeccCCcchhhceeccccC-----CCcEEEEeccccchhcC-HHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence            55678999999999888644     46799999999997543 346889999999999999999999999887543  35


Q ss_pred             cHHHHHHHhhcCceEEEecCCCHHHH-----------------HHHHHHHHhhCCCcEE-EEeeeC
Q psy786          129 TEVYRKRLDAFGFNAVVVDGHDVEHL-----------------VKVSSFKLQKAIGCVW-IQRGCC  176 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~vdG~d~~~l-----------------~~al~~a~~~~~~P~l-I~~~~~  176 (176)
                      ..++++..++.|++.+.+-..|+...                 .+++++++...+|+++ |-...|
T Consensus       553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~q~C  618 (1165)
T PRK09193        553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYDQTC  618 (1165)
T ss_pred             hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEcCcC
Confidence            67899999999998885422345443                 4566677644566644 444444

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=98.30  E-value=4.3e-06  Score=79.61  Aligned_cols=120  Identities=16%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc--c
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH--Q  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~--~  128 (176)
                      +.-.||.....++|.+.+..     +++|++++|||.|..... -+|.-|...+.+++++|++|.--.|.+++...-  .
T Consensus       466 ~~~~MG~~g~~~~G~a~~~~-----~~~v~a~iGDgTf~HSG~-~al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~  539 (1159)
T PRK13030        466 GLTQMGGEGVDWIGHAPFTE-----TKHVFQNLGDGTYFHSGS-LAIRQAVAAGANITYKILYNDAVAMTGGQPVDGSIS  539 (1159)
T ss_pred             eeeccCccchhhceeccccC-----CCCEEEEeccchhhhcCH-HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCC
Confidence            34578888888899888754     467999999999975433 379899999999999999999999998876432  2


Q ss_pred             cHHHHHHHhhcCceEEEecCCCHH----------------HHHHHHHHHHhhCCCcEE-EEeeeC
Q psy786          129 TEVYRKRLDAFGFNAVVVDGHDVE----------------HLVKVSSFKLQKAIGCVW-IQRGCC  176 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~vdG~d~~----------------~l~~al~~a~~~~~~P~l-I~~~~~  176 (176)
                      .+.+.+.+++.|++.+.|-..|+.                +..+++++++...+++++ |....|
T Consensus       540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~~q~C  604 (1159)
T PRK13030        540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIYDQTC  604 (1159)
T ss_pred             HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEEcCcc
Confidence            344455888999988854212433                344566677644566644 444444

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=98.29  E-value=5.7e-06  Score=76.13  Aligned_cols=171  Identities=14%  Similarity=0.092  Sum_probs=119.1

Q ss_pred             CCCCChHHHHHHHHcCCCCHHHHhhhhhcC--CC-------CCCCC-CCCCC------ccccCCcccchhHHHHHHHHHh
Q psy786            5 EIPFRTNRSKAWAEAGLFPVSELKNLRKID--SD-------LEGHP-TPRLN------FIDVGTGSLGQGLSVAAGMAYV   68 (176)
Q Consensus         5 ~~~~~~~~ya~l~~~G~~~~e~l~~~r~~~--~~-------l~~~~-~~~~~------~~~~~~g~~G~~l~~AvG~A~a   68 (176)
                      .||||.-|.-..-..|.-++..+..|..-.  ..       ..|.. +..++      .+.+.-+.+-.--|+..|.+-|
T Consensus       234 GMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa  313 (906)
T COG0567         234 GMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRA  313 (906)
T ss_pred             cccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHh
Confidence            489999999999999987776666663210  00       01111 11111      1223446677778899999888


Q ss_pred             chhcCC--C--cceEEEEECCCcc-CCchHHHHHHHhhh--cCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCc
Q psy786           69 GKYFDK--A--SYRTYCLVGDGES-AEGSIWEALHFASY--YKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGF  141 (176)
Q Consensus        69 ~~~~~~--~--~~~vv~~~GDG~~-~~G~~~eal~~a~~--~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~  141 (176)
                      ......  .  ...-+.+.||.+| .+|.+.|.+++...  +...-.+.|+-||+.+..+......+.+--.++|+.++.
T Consensus       314 ~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~a  393 (906)
T COG0567         314 KQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEA  393 (906)
T ss_pred             hhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCC
Confidence            653211  1  1334599999999 59999999998875  445557777778998988775444444444567889999


Q ss_pred             eEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          142 NAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       142 ~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +++.|+|.||+++..+.+-|++.   ..++++|+.-|
T Consensus       394 PifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvc  430 (906)
T COG0567         394 PIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVC  430 (906)
T ss_pred             ceeecccCCchhhhhhHHHHHHHHhhcCCCeeeeccc
Confidence            99999999999999999988863   35899999876

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=98.11  E-value=1.5e-05  Score=75.97  Aligned_cols=119  Identities=14%  Similarity=0.168  Sum_probs=84.2

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc--cc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ--HQ  128 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~--~~  128 (176)
                      +.-.||.....++|.+-+.+     +++|+.++|||.|..... -+|.-|...+.++++.|++|.--.|.+.+...  ..
T Consensus       493 ~~~~MGgeg~~~~G~a~f~~-----~~hv~aniGDgTffHSG~-~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~  566 (1186)
T PRK13029        493 GFSQMGGEGVAWIGQMPFSR-----RRHVFQNLGDGTYFHSGL-LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT  566 (1186)
T ss_pred             eeeccCcchhhheeecccCC-----CCCEEEEeccccchhcCH-HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence            34678888888888887654     467999999999975433 46889999999999999999999999877543  23


Q ss_pred             cHHHHHHHhhcCceEEEe-cCCCHH-----------------HHHHHHHHHHhhCCCcE-EEEeeeC
Q psy786          129 TEVYRKRLDAFGFNAVVV-DGHDVE-----------------HLVKVSSFKLQKAIGCV-WIQRGCC  176 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~v-dG~d~~-----------------~l~~al~~a~~~~~~P~-lI~~~~~  176 (176)
                      .+.+....++.|++-+.| + .++.                 +..+++++++...++++ +|-...|
T Consensus       567 v~~i~~~~~a~GV~~v~vv~-d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~q~C  632 (1186)
T PRK13029        567 VPQIARQVHAEGVRRIVVVT-DEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYDQTC  632 (1186)
T ss_pred             HHHHHHHHHhCCccEEEEeC-CCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEcCcC
Confidence            345566889999988855 4 2342                 33455666664445654 4444444

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.94  E-value=3.9e-05  Score=73.74  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=75.3

Q ss_pred             ceEEEEECCCcc-CCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----------------ccccHHHHHHHhhc
Q psy786           77 YRTYCLVGDGES-AEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----------------QHQTEVYRKRLDAF  139 (176)
Q Consensus        77 ~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----------------~~~~~~~~~~a~a~  139 (176)
                      +.||++.|||.. ..|.  ..+.-+.+.+.++.++|+||..|+..+.+..                .....|+..++.++
T Consensus       952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176       952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred             ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence            479999999965 5553  4588888899999999999999988754321                12245888999999


Q ss_pred             CceEE-Eec-CCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          140 GFNAV-VVD-GHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       140 G~~~~-~vd-G~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      |..++ ++. +.++.++.+++++|. +.+||.+|++-
T Consensus      1030 g~~yvA~~~~~~~~~~~~~~~~~A~-~~~G~s~i~~~ 1065 (1165)
T TIGR02176      1030 GYVYVAQVSMGANMQQTLKAFREAE-AYDGPSIVIAY 1065 (1165)
T ss_pred             CCCEEEEEecccCHHHHHHHHHHHH-cCCCCEEEEEE
Confidence            99888 664 568999999999996 67899999874

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>KOG0450|consensus

Probab=97.67  E-value=0.00013  Score=65.65  Aligned_cols=124  Identities=14%  Similarity=0.209  Sum_probs=89.3

Q ss_pred             CcccchhHHHHHHHHHhchhcCC----CcceEEEEECCCcc-CCchHHHHHHHhhh--cCCCcEEEEEecCCCccccCcc
Q psy786           52 TGSLGQGLSVAAGMAYVGKYFDK----ASYRTYCLVGDGES-AEGSIWEALHFASY--YKLDNLCVIFDINRLGQSEPTS  124 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~~~~----~~~~vv~~~GDG~~-~~G~~~eal~~a~~--~~lp~liiV~~nn~~~~~~~~~  124 (176)
                      -+.+-..=|+.+|--.|..+..+    ....-|.+.||++| .+|.+.|.+.+...  |--.-.|.|+-||+.+..+...
T Consensus       373 PSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR  452 (1017)
T KOG0450|consen  373 PSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPR  452 (1017)
T ss_pred             chhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcc
Confidence            35566667777887777655422    23457899999999 58988887655432  2222367788889999887655


Q ss_pred             cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEeee
Q psy786          125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRGC  175 (176)
Q Consensus       125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~~  175 (176)
                      ..++.+--.++|++.+.+.+.|+++|+|++.-+++-|.+   .-.+-++|++-|
T Consensus       453 ~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVc  506 (1017)
T KOG0450|consen  453 FARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVC  506 (1017)
T ss_pred             cccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEE
Confidence            444444456788999999999999999999999988854   235788888765

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=97.06  E-value=0.011  Score=43.61  Aligned_cols=106  Identities=15%  Similarity=0.024  Sum_probs=61.7

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~  134 (176)
                      ..+..+|.|.+++..     ..-+++.. |=|..+   ..+++..|...++|++++.-+-.........   ....|...
T Consensus        44 ~~A~~~A~g~~~~~~-----~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~---~q~~d~~~  112 (155)
T cd07035          44 QGAVGMADGYARATG-----KPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA---FQEIDQVA  112 (155)
T ss_pred             HHHHHHHHHHHHHHC-----CCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc---ccccCHHH
Confidence            445567778877653     12244444 444443   5678999999999966555443333222111   11123445


Q ss_pred             HHhhcCceEEEecCCCHHHHHHHHHHHHhhC----CCcEEEEee
Q psy786          135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQKA----IGCVWIQRG  174 (176)
Q Consensus       135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~----~~P~lI~~~  174 (176)
                      +++.+--...+++  +++++.+.+++|++.+    ++|+.|++.
T Consensus       113 ~~~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~ip  154 (155)
T cd07035         113 LFRPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDLP  154 (155)
T ss_pred             HHHHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence            5555544456775  7778887777777532    589999863

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.96  E-value=0.0051  Score=46.55  Aligned_cols=106  Identities=14%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR  133 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~  133 (176)
                      ..+..+|.|.+.+..      ++.+|++  |=|.++   ..-++..|...+.|++++.-+-...... . .......|..
T Consensus        49 ~~A~~~A~g~ar~~g------~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~-~-~~~q~~~d~~  117 (172)
T PF02776_consen   49 QGAAFMADGYARATG------RPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEG-R-GAFQQEIDQQ  117 (172)
T ss_dssp             HHHHHHHHHHHHHHS------SEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTT-T-TSTTSSTHHH
T ss_pred             chhHHHHHHHHHhhc------cceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhc-c-cccccchhhc
Confidence            344557778777653      3444444  444444   3456888889999966555543333333 1 1111134777


Q ss_pred             HHHhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          134 KRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       134 ~~a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+++.+.-...+++  +++++.+++++|++    ..++|+.|++-
T Consensus       118 ~~~~~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip  160 (172)
T PF02776_consen  118 SLFRPVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP  160 (172)
T ss_dssp             HHHGGGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred             chhccccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence            88999987777885  55555555555543    34799999873

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=96.85  E-value=0.021  Score=42.45  Aligned_cols=105  Identities=14%  Similarity=0.063  Sum_probs=61.6

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+..+|-|.+.+.+      +.++...|-|..+   ....|..|...+.|+|+++-+......... ...+...+...+
T Consensus        51 ~~A~~~A~g~~r~~~------~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~  120 (160)
T cd07034          51 HAAAEAAIGASAAGA------RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARY  120 (160)
T ss_pred             HHHHHHHHHHHhhCC------cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHh
Confidence            444556667776432      2455566777765   456788888889996666555443333221 111112334445


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      ++. -+...++.  +++++.+.+++|++   ..++|++|-.
T Consensus       121 ~~~-~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         121 GGH-PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             CCC-CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence            544 45566674  78888777777765   2358998864

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=96.85  E-value=0.021  Score=41.76  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      .+...|.|++.+..      +.++.+. |.|...   ..+.+..|...++|+ ++|....+......  ......+...+
T Consensus        46 ~a~~~A~G~a~~~~------~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pv-l~i~~~~~~~~~~~--~~~q~~~~~~~  113 (154)
T cd06586          46 GAAGAAAGYARAGG------PPVVIVTSGTGLLN---AINGLADAAAEHLPV-VFLIGARGISAQAK--QTFQSMFDLGM  113 (154)
T ss_pred             HHHHHHHHHHHhhC------CEEEEEcCCCcHHH---HHHHHHHHHhcCCCE-EEEeCCCChhhhcc--CcccccCHHHH
Confidence            34556777777542      3444444 787764   556788888899994 44444344322111  11112334556


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      ++.+..-.+.+.  ++++..+.+.+|++   ..++|++|++.
T Consensus       114 ~~~~~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~ip  153 (154)
T cd06586         114 YRSIPEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRLP  153 (154)
T ss_pred             HHHhhheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence            777765555553  45554444444443   23789999763

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=96.82  E-value=0.019  Score=42.94  Aligned_cols=100  Identities=16%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHH-HhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH-FASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRK  134 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~-~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~  134 (176)
                      .++.|.|+|+.-      -++++...  ..|.. ...+.+. .++.+++|+ +++....+++.  .+.+..  +..++ .
T Consensus        51 ~vg~A~GlA~~G------~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv-~~~~~~~g~~~~~~G~tH~--~~~~~-a  117 (156)
T cd07033          51 MVGIAAGLALHG------LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPV-KFVGTHAGISVGEDGPTHQ--GIEDI-A  117 (156)
T ss_pred             HHHHHHHHHHCC------CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCe-EEEEECCcEecCCCCcccc--hHHHH-H
Confidence            355677888642      24555555  45533 4566676 888899995 45566555544  332221  12333 3


Q ss_pred             HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +.+.+ |++.+.-  .|+++++..+++|++ .++|++|-.
T Consensus       118 ~~~~iPg~~v~~P--s~~~~~~~ll~~a~~-~~~P~~irl  154 (156)
T cd07033         118 LLRAIPNMTVLRP--ADANETAAALEAALE-YDGPVYIRL  154 (156)
T ss_pred             HhcCCCCCEEEec--CCHHHHHHHHHHHHh-CCCCEEEEe
Confidence            55555 7777654  489999999999984 567988754

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=96.63  E-value=0.072  Score=40.01  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=63.7

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh-hcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS-YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~-~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~  134 (176)
                      +.+.+.|.|..++.      .+.++|+.+=|-.   ....+|..|. ..++|+++++-.-+.++...+.+.... .--..
T Consensus        44 e~aa~~aAg~~~~~------~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g-~~~~~  113 (157)
T TIGR03845        44 EEGVGICAGAYLAG------KKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMG-RATPK  113 (157)
T ss_pred             HHHHHHHHHHHHhc------CCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchh-hhhHH
Confidence            66677777877653      3567888888833   3566788999 999996666533333222211111111 11122


Q ss_pred             HHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      ..+..+++...++  +++++ +++++|++   ..++|+.|-+
T Consensus       114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~  152 (157)
T TIGR03845       114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALL  152 (157)
T ss_pred             HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEE
Confidence            3455677777885  67777 77777764   2458987754

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=96.44  E-value=0.079  Score=39.94  Aligned_cols=103  Identities=13%  Similarity=-0.028  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-.|-|.+.+..   + -..+++..|-|.++   ..-++..|...++|+|++ .-+........  ......|..++++.
T Consensus        51 ~~mA~gyar~tg---~-~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I-~g~~~~~~~~~--~~~q~~d~~~~~~~  120 (164)
T cd07039          51 AFAASAEAKLTG---K-LGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAI-AGQVPTDELGT--DYFQEVDLLALFKD  120 (164)
T ss_pred             HHHHHHHHHHhC---C-CEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEE-ecCCcccccCC--CCCcccCHHHHHHH
Confidence            335667776543   1 23455555777776   345788999999995544 32222221111  11112356677888


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~  173 (176)
                      +--...+++  +++++.+++++|++.   .++|+.|++
T Consensus       121 ~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i  156 (164)
T cd07039         121 VAVYNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL  156 (164)
T ss_pred             hhcEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            866666775  676666666666542   359999986

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=96.31  E-value=0.094  Score=39.42  Aligned_cols=108  Identities=16%  Similarity=0.052  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--cccc---ccH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--SLQH---QTE  130 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~~~~---~~~  130 (176)
                      ..+.-+|-|.+.+.+     -..+++..|-|..+   ..-++..|...+.|+|++.-+...-......  +...   ..+
T Consensus        45 ~~A~~mA~gyar~t~-----~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~  116 (162)
T cd07038          45 LNAGYAADGYARVKG-----LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFD  116 (162)
T ss_pred             HHHHHHHHHHHHhhC-----CEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchH
Confidence            334446667776543     22344444666665   4457889999999965554332211111110  0000   112


Q ss_pred             HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      |..++++.+--...++.  +++++.+.+++|++   ..++|++|++
T Consensus       117 d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i  160 (162)
T cd07038         117 VFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI  160 (162)
T ss_pred             HHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence            45678888766666775  66666666666654   2358999986

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>PRK07524 hypothetical protein; Provisional

Probab=95.99  E-value=0.078  Score=47.16  Aligned_cols=110  Identities=16%  Similarity=0.035  Sum_probs=66.8

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|-|.|.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+.............+...|...+
T Consensus        49 ~~A~~mAdgyar~tg~----~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l  121 (535)
T PRK07524         49 QGAGFMADGYARVSGK----PGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAM  121 (535)
T ss_pred             HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHH
Confidence            3344567777766531    23455556777776   3457999999999966665443322221110011111356678


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+--...+++  +++++.+.+++|++.    .+||+.|++-
T Consensus       122 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  162 (535)
T PRK07524        122 VAGVAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIP  162 (535)
T ss_pred             hhhhceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            888876667775  787777777777642    3589999863

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family

Probab=95.88  E-value=0.19  Score=41.08  Aligned_cols=85  Identities=22%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             eEEEEECCCc--cCCchHHHHHHHhhhcCCCcEEEEEecC--CCccccCcccc---cccHHHHHHHhhcCceEEEecCCC
Q psy786           78 RTYCLVGDGE--SAEGSIWEALHFASYYKLDNLCVIFDIN--RLGQSEPTSLQ---HQTEVYRKRLDAFGFNAVVVDGHD  150 (176)
Q Consensus        78 ~vv~~~GDG~--~~~G~~~eal~~a~~~~lp~liiV~~nn--~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~~vdG~d  150 (176)
                      +++.++.||.  +.++.....+.-|.+.++-++++++++.  +-+|....+..   .....+...++.|+++++.|= +|
T Consensus       166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~  244 (266)
T cd01460         166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD  244 (266)
T ss_pred             cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence            7999999999  7777665667778888998788888876  33443211110   011167788999999999652 48


Q ss_pred             HHHHHHHHHHHHh
Q psy786          151 VEHLVKVSSFKLQ  163 (176)
Q Consensus       151 ~~~l~~al~~a~~  163 (176)
                      +++|.+.+..++.
T Consensus       245 ~~~lp~~l~~~lr  257 (266)
T cd01460         245 LNQLPSVLSDALR  257 (266)
T ss_pred             hhHhHHHHHHHHH
Confidence            9999888887764

The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=95.86  E-value=0.11  Score=44.20  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=60.2

Q ss_pred             cchhHHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC-Cccc-cCcccccccH
Q psy786           55 LGQGLSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINR-LGQS-EPTSLQHQTE  130 (176)
Q Consensus        55 ~G~~l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~-~~~~-~~~~~~~~~~  130 (176)
                      =|.++++|.|+.++..     .+.+|.+  .|=|-.-  ...-+|.....+++|++++| -..+ ++.. .+++.... .
T Consensus        35 E~~av~iaaG~~latG-----~~~~v~mQnSGlGn~v--N~l~SL~~~~~y~iP~l~~i-~~RG~~g~~depqh~~~G-~  105 (361)
T TIGR03297        35 EGAAVGLAAGAYLATG-----KRAAVYMQNSGLGNAV--NPLTSLADTEVYDIPLLLIV-GWRGEPGVHDEPQHVKQG-R  105 (361)
T ss_pred             chHHHHHHHHHHHhcC-----CccEEEEecCchhhhh--hHHHhhccccccCcCeeEEE-ecCCCCCCCCCchhhHHh-H
Confidence            4888999999999843     2345554  2333111  01112333567899965554 4344 3322 12222222 3


Q ss_pred             HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      -..++.+++++++..++ .+.++..+++.+|++   ..++|+.|-+
T Consensus       106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~  150 (361)
T TIGR03297       106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVV  150 (361)
T ss_pred             HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            45678999999999984 244455444544443   3567865543

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=95.86  E-value=0.085  Score=39.85  Aligned_cols=106  Identities=15%  Similarity=0.027  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.+...    -..+++..|-|..+   ..-++..|...+.|+|++ .-+-.......  ..+...|...+++
T Consensus        47 A~~mAdgyar~sg~----~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i-~g~~~~~~~~~--~~~q~~d~~~l~~  116 (162)
T cd07037          47 AAFFALGLAKASGR----PVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVL-TADRPPELRGT--GANQTIDQVGLFG  116 (162)
T ss_pred             HHHHHHHHHHhhCC----CEEEEECCchHHHH---HhHHHHHHHhcCCCEEEE-ECCCCHHhcCC--CCCcccchhhhcc
Confidence            34467777766531    22344444666665   345688999999995444 43222221111  1111234455666


Q ss_pred             hcCceEEEe-cCCC-------HHHHHHHHHHHHhhCCCcEEEEe
Q psy786          138 AFGFNAVVV-DGHD-------VEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~v-dG~d-------~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .+--...++ +..+       ++.+.+|++.|....+||++|++
T Consensus       117 ~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i  160 (162)
T cd07037         117 DYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL  160 (162)
T ss_pred             ceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence            664444555 2233       45566666666533469999986

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>PRK07064 hypothetical protein; Provisional

Probab=95.70  E-value=0.12  Score=45.99  Aligned_cols=108  Identities=17%  Similarity=0.002  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-+...+...........|...+++
T Consensus        53 A~~~A~gyar~tg~----~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~  125 (544)
T PRK07064         53 AVNMADAHARVSGG----LGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLR  125 (544)
T ss_pred             HHHHHHHHHHhcCC----CeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhh
Confidence            34467787776531    23455566888886   445788999999996555433222111111000011235667777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+=-...+++  +++++.+++++|++.    .+||+.|++-
T Consensus       126 ~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP  164 (544)
T PRK07064        126 AVSKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIP  164 (544)
T ss_pred             hhcceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeC
Confidence            7755566775  677766666666542    3699999863

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=95.39  E-value=0.18  Score=45.34  Aligned_cols=105  Identities=11%  Similarity=-0.029  Sum_probs=65.8

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-..... +  ...+...|...++
T Consensus        53 ~A~~mAdgYar~tg~----~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~l~  122 (574)
T PRK07979         53 AAVHMADGLARATGE----VGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLI-G--YDAFQECDMVGIS  122 (574)
T ss_pred             HHHHHHHHHHHHhCC----ceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhcc-C--CCCCceecHHHHh
Confidence            334467777776531    24566667888876   345788999999996655433222111 1  1112224666778


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+=-...+|+  +++++.+.+++|+..    .+||+.|++
T Consensus       123 ~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~i  161 (574)
T PRK07979        123 RPVVKHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDL  161 (574)
T ss_pred             hcccceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEc
Confidence            87755566775  788888888877642    358999986

>PRK08266 hypothetical protein; Provisional

Probab=95.32  E-value=0.2  Score=44.61  Aligned_cols=107  Identities=16%  Similarity=-0.016  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-............+...|...+++
T Consensus        55 A~~~A~gyar~tg~----~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~  127 (542)
T PRK08266         55 AGYMAFGYARSTGR----PGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLR  127 (542)
T ss_pred             HHHHHHHHHHHhCC----CeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHh
Confidence            34467777776531    12444555888886   345788999999995555432121111111000111135667788


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      .+--...+++  +++++.+.+++|++.    ..||+.|++
T Consensus       128 ~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~i  165 (542)
T PRK08266        128 SFTKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEM  165 (542)
T ss_pred             hhcceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence            7755566775  677766666666542    358999986

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=95.29  E-value=0.27  Score=42.11  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH-H
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR-K  134 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~-~  134 (176)
                      -.++.+|+|++++=       .++++.+.=+++.  ..+|.+.+++-.++|+++++.+.-+-+..-++...  ..|+. .
T Consensus        58 ~aA~~~a~GAs~aG-------~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~~~--q~D~~~~  126 (376)
T PRK08659         58 IASMAAVIGASWAG-------AKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTKPA--QGDMMQA  126 (376)
T ss_pred             HHHHHHHHhHHhhC-------CCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCCcC--cHHHHHH
Confidence            45577899999874       4677777666665  36788999998899977777765432211111111  12332 2


Q ss_pred             HHhhc---CceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          135 RLDAF---GFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       135 ~a~a~---G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      +.-++   +|-.+..  .|++|..+....|++   +.+-|+++-
T Consensus       127 ~~~~hgd~~~ivl~p--~~~QEa~d~~~~Af~lAE~~~~PViv~  168 (376)
T PRK08659        127 RWGTHGDHPIIALSP--SSVQECFDLTIRAFNLAEKYRTPVIVL  168 (376)
T ss_pred             hcccCCCcCcEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            22233   3544443  589888888877765   245788764

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=95.14  E-value=0.39  Score=40.76  Aligned_cols=103  Identities=14%  Similarity=0.141  Sum_probs=65.2

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      -.++..|+|++++-       .++++.+.+.++.  ..+|.+..|+-..+|+++++++ .. +-+... .+....|....
T Consensus        58 ~aA~~~a~GAs~aG-------~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~-R~-~p~~g~-t~~eq~D~~~~  125 (352)
T PRK07119         58 VAAINMVYGAAATG-------KRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM-RG-GPGLGN-IQPSQGDYFQA  125 (352)
T ss_pred             HHHHHHHHHHHhhC-------CCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec-cC-CCCCCC-CcchhHHHHHH
Confidence            34577899999874       4799999999987  4789999999999996665554 33 221111 11111233211


Q ss_pred             Hh-----hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          136 LD-----AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       136 a~-----a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      .+     -++|..+..  .|++|.++...+|++   +.+-|+++-
T Consensus       126 ~~~~ghgd~~~~vl~p--~~~qEa~d~~~~Af~lAE~~~~PViv~  168 (352)
T PRK07119        126 VKGGGHGDYRLIVLAP--SSVQEMVDLTMLAFDLADKYRNPVMVL  168 (352)
T ss_pred             HhcCCCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            11     234555544  589988888777765   345788764

>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins

Probab=95.02  E-value=0.39  Score=36.42  Aligned_cols=99  Identities=12%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhc--------CCCcEEEEEecCCCccccCccccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYY--------KLDNLCVIFDINRLGQSEPTSLQH  127 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~--------~lp~liiV~~nn~~~~~~~~~~~~  127 (176)
                      ..++.|.|+|+.-       .++++.+.=+.|.. ..+|-+ +.++.+        ++| ++++....+++..+.+   .
T Consensus        55 ~~vg~AaGlA~~G-------~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~p-v~i~~~~gg~~~~G~t---h  122 (167)
T cd07036          55 GIVGLAVGAAMNG-------LRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVP-IVIRGPNGGGIGGGAQ---H  122 (167)
T ss_pred             HHHHHHHHHHHcC-------CEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCC-EEEEEeCCCCCCcChh---h
Confidence            3456677777742       34555444455543 344444 333333        588 4555666665543433   2


Q ss_pred             ccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          128 QTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       128 ~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      ...+ ..+.+++ |+.++.-  .|+.+.+..++.++ +.++|+++
T Consensus       123 s~~~-~a~lr~iPg~~V~~P--sd~~e~~~~l~~~~-~~~~P~~~  163 (167)
T cd07036         123 SQSL-EAWFAHIPGLKVVAP--STPYDAKGLLKAAI-RDDDPVIF  163 (167)
T ss_pred             hhhH-HHHHhcCCCCEEEee--CCHHHHHHHHHHHH-hCCCcEEE
Confidence            2334 4567777 8888765  38999999999998 46789876

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=94.97  E-value=0.34  Score=43.27  Aligned_cols=107  Identities=12%  Similarity=-0.060  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-........ .....+...|...+++
T Consensus        52 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~-~~~~~~q~~d~~~~~~  123 (554)
T TIGR03254        52 AGYAAAAAGFLTQK----PGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVD-LQQGDYEEMDQLAAAK  123 (554)
T ss_pred             HHHHHHHHHHHhCC----CEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccc-cCCCCcchhhHHHHhh
Confidence            34467777766531    23455555888887   3457999999999966665432221110 0011122246677888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+--...+++  +++++.+.+++|++    ..+||+.|++-
T Consensus       124 ~vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP  162 (554)
T TIGR03254       124 PFAKAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLP  162 (554)
T ss_pred             hhheeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            8766677775  67776666666654    23588999874

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK08611 pyruvate oxidase; Provisional

Probab=94.94  E-value=0.26  Score=44.35  Aligned_cols=104  Identities=13%  Similarity=0.023  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-... ..+.  ..+...|..++++
T Consensus        55 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~-~~~~--~~~q~~d~~~l~~  124 (576)
T PRK08611         55 AALAAAAYAKLTGK----IGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSD-LLGT--DFFQEVNLEKMFE  124 (576)
T ss_pred             HHHHHHHHHHHhCC----ceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccc-ccCC--CCccccCHHHHhh
Confidence            34467777765431    23455555888886   3457889999999965554332222 1111  1111235677888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~  173 (176)
                      .+--...+++  +++++.+++++|+..   .+||+.|++
T Consensus       125 ~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~i  161 (576)
T PRK08611        125 DVAVYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTI  161 (576)
T ss_pred             cccceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEe
Confidence            7765566775  777777766666542   369999986

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.89  E-value=0.32  Score=43.69  Aligned_cols=104  Identities=13%  Similarity=-0.006  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.|....    .-..+++..|-|..+   ..-.|.+|..-+.|+|++.-+-....+.   ...+...|...+++
T Consensus        51 Aa~mAdgyar~TG----kpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g---~~afQe~D~~~l~~  120 (550)
T COG0028          51 AAFAADGYARATG----KPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIG---TDAFQEVDQVGLFR  120 (550)
T ss_pred             HHHHHHHHHHHcC----CCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccC---cchhhhcchhhHhh
Confidence            3446777776653    235788889999997   4457999999999965553211111111   11222347777888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      .+=-..++|.  +++++.+.+++|++.    ..||++|++
T Consensus       121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~i  158 (550)
T COG0028         121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDL  158 (550)
T ss_pred             hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence            8866667775  888888888888752    248999985

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=94.84  E-value=0.26  Score=44.37  Aligned_cols=103  Identities=17%  Similarity=0.073  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH-H
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK-R  135 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~-~  135 (176)
                      .++..++|++++=       .++++.+-=.++.  ...|.|.+|....+|+++++++.-+-+..-++...  ..|+.. +
T Consensus       248 aA~~~a~GAs~aG-------~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~~e--q~D~~~~~  316 (562)
T TIGR03710       248 AAINMAIGASYAG-------ARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTKTE--QSDLLFAL  316 (562)
T ss_pred             HHHHHHHhHHhcC-------CceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCCcc--HHHHHHHh
Confidence            4577888888874       4677777767776  46899999999999976666665433221112211  223222 2


Q ss_pred             Hhh---cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          136 LDA---FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       136 a~a---~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      .-+   ++|..+..  .|++|..+...+|+.   +.+-|+++-
T Consensus       317 ~~~hgd~~~ivl~p--~~~qEa~d~~~~Af~lAe~~~~PViv~  357 (562)
T TIGR03710       317 YGGHGEFPRIVLAP--GSPEECFYLAIEAFNLAEKYQTPVIVL  357 (562)
T ss_pred             cCCCCCcCceEEcC--CCHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            121   24544444  588888887777764   345788764

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=94.79  E-value=0.34  Score=43.64  Aligned_cols=107  Identities=10%  Similarity=-0.046  Sum_probs=64.2

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+..+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-..... .  .......|...+
T Consensus        48 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~-~--~~~~q~~d~~~l  117 (586)
T PRK06276         48 QAAAHAADGYARASGK----VGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI-G--NDAFQEIDALGI  117 (586)
T ss_pred             HHHHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc-C--CCCCccccHhhH
Confidence            3445567787776531    23455556788776   445788999999996655432111111 1  111112355667


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+--...+++  +++++...+++|++.    .+||+.|++-
T Consensus       118 ~~~~tk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP  158 (586)
T PRK06276        118 FMPITKHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLP  158 (586)
T ss_pred             HhhhcceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence            777765566775  777777777777643    3589999863

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=94.77  E-value=0.57  Score=35.57  Aligned_cols=106  Identities=19%  Similarity=0.149  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccC-CchHHHHHH-HhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESA-EGSIWEALH-FASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~-~G~~~eal~-~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.-++    -.+++...+|=... +-...+.+. .....++|+.+++....+++..+.+.  .+..+. .+
T Consensus        60 ~vg~a~GlA~~G~~----~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH--~s~~d~-~~  132 (178)
T PF02779_consen   60 MVGMAAGLALAGGL----RPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTH--HSIEDE-AI  132 (178)
T ss_dssp             HHHHHHHHHHHSSS----EEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTT--SSSSHH-HH
T ss_pred             ccceeeeeeecccc----cceeEeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccc--cccccc-cc
Confidence            46778888886520    13444555443330 013444454 66678899663322222234443332  223344 45


Q ss_pred             Hhhc-CceEEEecCCCHHHHHHHHHHHHhh-CCCcEEEE
Q psy786          136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWIQ  172 (176)
Q Consensus       136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~  172 (176)
                      .+++ |++++.-  .|+.++...++.+++. .++|++|-
T Consensus       133 ~~~iPg~~v~~P--sd~~e~~~~l~~a~~~~~~~P~~ir  169 (178)
T PF02779_consen  133 LRSIPGMKVVVP--SDPAEAKGLLRAAIRRESDGPVYIR  169 (178)
T ss_dssp             HHTSTTEEEEE---SSHHHHHHHHHHHHHSSSSSEEEEE
T ss_pred             cccccccccccC--CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            5666 8888865  3899999999999853 57998874

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=94.77  E-value=0.42  Score=43.53  Aligned_cols=101  Identities=15%  Similarity=0.110  Sum_probs=62.3

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~  134 (176)
                      ..++.|.|+|+.-      -++++++  -+.|.+ ..++-+ +.++..++| ++++.+..++. ..+++.  +...|++ 
T Consensus       363 ~~vg~AaGlA~~G------~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lp-V~i~~~~~G~~g~dG~tH--~~~~dia-  429 (617)
T TIGR00204       363 HAVTFAAGMAIEG------YKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLP-VLFAIDRAGIVGADGETH--QGAFDIS-  429 (617)
T ss_pred             HHHHHHHHHHHCC------CEEEEEe--cHHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCCCCCccc--ccchHHH-
Confidence            3456688877632      2445554  566654 444444 556788999 55666666653 222222  2235555 


Q ss_pred             HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      +++.. |+.++.-  .|+.++...++.|++..++|++|-
T Consensus       430 ~lr~iPgl~V~~P--sd~~e~~~~l~~a~~~~~~Pv~ir  466 (617)
T TIGR00204       430 YLRCIPNMVIMAP--SDENELRQMLYTGYHYDDGPIAVR  466 (617)
T ss_pred             HHhcCCCcEEEee--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence            44444 8887754  389999999999985445898764

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.76  E-value=0.29  Score=44.04  Aligned_cols=106  Identities=14%  Similarity=0.026  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.|.....    -..+++..|-|.++   ..-++..|...+.|+|++.-.-......   .......|...++
T Consensus        63 ~A~~mAdgyar~tg~----~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~~d~~~l~  132 (570)
T PRK06725         63 AAIHAAEGYARASGK----VGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG---KDGFQEADVVGIT  132 (570)
T ss_pred             HHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc---CCCCcccchhhhh
Confidence            334467777765431    23455566888776   4457889999999966665433322111   1112224667788


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +.+--...+|+  +++++.+.+++|+..    .+||+.|++-
T Consensus       133 ~~itk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP  172 (570)
T PRK06725        133 VPVTKHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIP  172 (570)
T ss_pred             hccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccc
Confidence            88765566775  788877777777642    3589999863

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=94.74  E-value=0.25  Score=44.33  Aligned_cols=107  Identities=13%  Similarity=-0.005  Sum_probs=63.5

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|.|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-.......   ......|...+
T Consensus        63 ~~A~~~A~gyar~tg~----~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~---~~~q~~d~~~l  132 (571)
T PRK07710         63 QGAIHAAEGYARISGK----PGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS---DAFQEADIMGI  132 (571)
T ss_pred             HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhh
Confidence            4445577777776531    23445555888776   34578899999999665544322222211   11112355667


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+=-..+++.  +++++.+.+++|++.    .+||+.|++-
T Consensus       133 ~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  173 (571)
T PRK07710        133 TMPVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIP  173 (571)
T ss_pred             hhcccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            777654555664  777777777776642    2589999863

>PLN02470 acetolactate synthase

Probab=94.72  E-value=0.24  Score=44.61  Aligned_cols=105  Identities=15%  Similarity=0.027  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-....+..   ..+...|...+++
T Consensus        63 A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~  132 (585)
T PLN02470         63 EVFAAEGYAKASGK----VGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTR  132 (585)
T ss_pred             HHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhh
Confidence            44467777776531    23556666888887   34578899999999666643322221111   1112235566777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+--..++|+  +++++.+.+++|++.    .+||+.|++-
T Consensus       133 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP  171 (585)
T PLN02470        133 SITKHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIP  171 (585)
T ss_pred             hheEEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence            7765566774  788888888777653    2599999873

>smart00861 Transket_pyr Transketolase, pyrimidine binding domain

Probab=94.68  E-value=0.59  Score=34.94  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.-.      +++++....  |.. ...+.+.+...++ ++.+++....+.  +..+.+.  ++..++. +
T Consensus        61 ~vg~a~GlA~~G~------~pi~~~~~~--f~~-~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~~G~tH--~~~~~~~-~  127 (168)
T smart00861       61 MVGFAAGLALAGL------RPVVAIFFT--FFD-RAKDQIRSDGAMG-RVPVVVRHDSGGGVGEDGPTH--HSQEDEA-L  127 (168)
T ss_pred             HHHHHHHHHHcCC------CcEEEeeHH--HHH-HHHHHHHHhCccc-CCCEEEEecCccccCCCCccc--cchhHHH-H
Confidence            3556777776432      456666633  322 4566677777776 333344443333  3323222  2223443 4


Q ss_pred             Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .+.+ |+.++.-  .|+.|++..++.+++..++|.+|-
T Consensus       128 ~~~iP~~~v~~P--~~~~e~~~~l~~a~~~~~~p~~i~  163 (168)
T smart00861      128 LRAIPGLKVVAP--SDPAEAKGLLRAAIRRDDGPPVIR  163 (168)
T ss_pred             HhcCCCcEEEec--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence            4444 6766654  489999999999986556886654

Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=94.59  E-value=0.46  Score=43.61  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a  136 (176)
                      ++.|.|+|+...     -+++++..  ..|.+ ...+.+..++..++| +++|....+++  ..+++.  ++..|++ +.
T Consensus       409 v~~AaGlA~~gG-----~~p~~~tf--~~F~~-r~~~~ir~~a~~~lp-V~~v~th~g~~~G~dG~TH--q~iedia-~l  476 (653)
T TIGR00232       409 GAIMNGIALHGG-----FKPYGGTF--LMFVD-YARPAIRLAALMKLP-VIYVYTHDSIGVGEDGPTH--QPIEQLA-SL  476 (653)
T ss_pred             HHHHHHHHHcCC-----CeEEEEEh--HHHHH-HHHHHHHHHHhcCCC-EEEEEeCCccCCCCCCccc--CCHHHHH-HH
Confidence            456777776322     12333333  35544 567778888899999 55556545544  333333  3345555 45


Q ss_pred             hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ++. |+.++.=  .|..|+..+++.+++..++|+.|-
T Consensus       477 r~iPn~~v~~P--aD~~E~~~~~~~a~~~~~gP~~ir  511 (653)
T TIGR00232       477 RAIPNLSVWRP--CDGNETAAAWKYALESQDGPTALI  511 (653)
T ss_pred             hcCCCCEEEee--CCHHHHHHHHHHHHhcCCCcEEEE
Confidence            555 8887754  389999999999986667898874

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=94.58  E-value=0.39  Score=42.90  Aligned_cols=103  Identities=12%  Similarity=-0.002  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+...    -..+++..|-|.++   ..-++..|..-+.|+|++.-+-.. .....  ......|...+++.
T Consensus        52 ~~mAdgyar~tgk----pgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~-~~~~~--~~~q~~d~~~l~~~  121 (549)
T PRK06457         52 ALAASVEAKITGK----PSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVES-DMIGH--DYFQEVNLTKLFDD  121 (549)
T ss_pred             HHHHHHHHHHhCC----CeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCc-cccCC--Ccccccchhhhhcc
Confidence            3467777776531    23445556888876   445789999999996655443221 11111  11112355667776


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~  173 (176)
                      +=-...++.  +++++.+.+++|+..   .+||+.|++
T Consensus       122 vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i  157 (549)
T PRK06457        122 VAVFNQILI--NPENAEYIIRRAIREAISKRGVAHINL  157 (549)
T ss_pred             ceeEEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            644455664  677766666666542   369999986

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=94.58  E-value=0.45  Score=42.73  Aligned_cols=107  Identities=11%  Similarity=-0.031  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-. ..........+...|...+++
T Consensus        59 A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~-~~~~~~~~~~~q~~d~~~~~~  130 (569)
T PRK09259         59 AGNAAAAAGFLTQK----PGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSE-REIVDLQQGDYEELDQLNAAK  130 (569)
T ss_pred             HHHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCC-cccccccCCCccccchhhhhh
Confidence            34456677765421    23445555888876   34579999999999666654322 111000011112235667777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+--..++|+  +++++.+.+++|+..    .+||+.|++-
T Consensus       131 ~~tk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  169 (569)
T PRK09259        131 PFCKAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP  169 (569)
T ss_pred             hheeeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence            7765566775  677777666666542    3589999873

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=94.55  E-value=0.43  Score=43.02  Aligned_cols=104  Identities=13%  Similarity=-0.012  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-....+..   ..+...|...+++.
T Consensus        56 ~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~---~~~q~~d~~~l~~~  125 (588)
T PRK07525         56 GHMADGYTRVTGR----MGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQ---GGFQEAEQMPMFED  125 (588)
T ss_pred             HHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCC---CCCcccchhhhhhh
Confidence            4467777776531    23455556888876   34578899999999655542211111111   11112245567777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      +=-..++++  +++++.+.+++|+.   ..+||+.|++-
T Consensus       126 ~tk~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP  162 (588)
T PRK07525        126 MTKYQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIP  162 (588)
T ss_pred             heeEEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            644455664  66665555555553   23689999873

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=94.52  E-value=0.36  Score=43.29  Aligned_cols=105  Identities=11%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-..... .  .......|...+++
T Consensus        55 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~i~~  124 (572)
T PRK06456         55 AAHAADGYARASGV----PGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVM-G--KMAFQEADAMGVFE  124 (572)
T ss_pred             HHHHHHHHHHhhCC----CEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCcccc-C--CCCccccchhhhhh
Confidence            34467777776431    12334446888886   445789999999996655433222111 1  11111235567777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+--...+++  +++++.+.+++|++    ..+||+.|++-
T Consensus       125 ~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  163 (572)
T PRK06456        125 NVTKYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIP  163 (572)
T ss_pred             ccceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecC
Confidence            7766666774  77777777777664    23599999863

>PRK08322 acetolactate synthase; Reviewed

Probab=94.52  E-value=0.4  Score=42.67  Aligned_cols=105  Identities=9%  Similarity=-0.006  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-..... ..  ..+...|...+++
T Consensus        50 A~~~A~gyar~tg~----~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~-~~--~~~q~~d~~~~~~  119 (547)
T PRK08322         50 AAFMAATYGRLTGK----AGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRS-KQ--GSFQIVDVVAMMA  119 (547)
T ss_pred             HHHHHHHHHHhhCC----CEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEecccccccc-CC--CccccccHHHHhh
Confidence            34467777776531    23445555787776   345788999999996555433222111 11  1122235667777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+--...+|+  +++++.+.+++|++.    .+||+.|++-
T Consensus       120 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  158 (547)
T PRK08322        120 PLTKWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELP  158 (547)
T ss_pred             hheeEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcC
Confidence            7654555674  777777777666642    3589999863

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=94.36  E-value=0.5  Score=42.88  Aligned_cols=105  Identities=13%  Similarity=0.047  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+....    .-..+++..|-|.++   ..-++..|..-+.|+|++.-+-....+..   ..+...|...++
T Consensus        71 ~Aa~aA~gyar~tg----k~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~Qe~d~~~~~  140 (616)
T PRK07418         71 GAAHAADGYARATG----KVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAIGT---DAFQETDIFGIT  140 (616)
T ss_pred             HHHHHHHHHHHHhC----CCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC---CCcccccHHHHh
Confidence            34446777776542    123455555888887   44579999999999666654322221111   111123556677


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+--...+|+  +++++.+++++|++.    ..||++|++
T Consensus       141 ~~vtk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~i  179 (616)
T PRK07418        141 LPIVKHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDI  179 (616)
T ss_pred             hhcceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEec
Confidence            76654445675  777777777777642    349999986

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.36  E-value=0.35  Score=43.47  Aligned_cols=104  Identities=10%  Similarity=-0.030  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|..-+.|+|++.-+-..... ..  ..+...|...+++
T Consensus        54 A~~mAdgyar~tg~----~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~-~~--~~~q~~d~~~l~~  123 (574)
T PRK06466         54 ATHMADGYARATGK----TGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLI-GE--DAFQETDMVGISR  123 (574)
T ss_pred             HHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc-CC--Ccccccchhhhhh
Confidence            34467777765431    23455556888886   445799999999996655433222111 11  1112246667777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      .+=-...+|+  +++++...+++|+..    .+||+.|++
T Consensus       124 ~itk~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~i  161 (574)
T PRK06466        124 PIVKHSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDI  161 (574)
T ss_pred             ccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence            7755566775  777777777777642    258999986

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=94.34  E-value=0.63  Score=42.63  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             Ccccc-hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccc
Q psy786           52 TGSLG-QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQ  128 (176)
Q Consensus        52 ~g~~G-~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~  128 (176)
                      +|.-- ..++.|.|+|+.-      -++++.+.  ..|.+ ...+.+ ..++..++|+ +++++..++. ..+++.  ++
T Consensus       366 ~GIaE~~mvg~AaGlA~~G------~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv-~~v~~~~G~~g~dG~TH--q~  433 (641)
T PRK12571        366 VGIAEQHAVTFAAGLAAAG------LKPFCAVY--STFLQ-RGYDQLLHDVALQNLPV-RFVLDRAGLVGADGATH--AG  433 (641)
T ss_pred             cCccHHHHHHHHHHHHHCC------CEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCe-EEEEECCCcCCCCCccc--cc
Confidence            44442 3355678888732      24566554  45654 556666 5578899994 5666655542 222222  22


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..|++ ++++. |+.++.=  .|+.|+..+++.|++..++|+.|-
T Consensus       434 ~~dia-~lr~iPnl~V~~P--sd~~e~~~~l~~a~~~~~~P~~ir  475 (641)
T PRK12571        434 AFDLA-FLTNLPNMTVMAP--RDEAELRHMLRTAAAHDDGPIAVR  475 (641)
T ss_pred             cHHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence            34554 44444 8887754  389999999999985457998774

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=94.34  E-value=0.48  Score=42.35  Aligned_cols=106  Identities=11%  Similarity=-0.009  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...++|+|++.-+-......   .......|...++
T Consensus        50 ~A~~~Adgyar~tg~----~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~~~~  119 (558)
T TIGR00118        50 GAAHAADGYARASGK----VGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG---SDAFQEADILGIT  119 (558)
T ss_pred             HHHHHHHHHHHHhCC----CEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC---CCCCcccChhhhh
Confidence            334467777766531    23556666888776   4457889999999966555432211111   1111123556677


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +.+--...+++  +++++.+.+++|++.    .+||+.|++-
T Consensus       120 ~~~tk~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP  159 (558)
T TIGR00118       120 MPITKHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP  159 (558)
T ss_pred             cCccceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence            87766667775  777777777777642    3589999863

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=94.34  E-value=0.66  Score=41.93  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCcc-ccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~~~~~~~~a  136 (176)
                      ++.|.|+|+.-      -++++..  =..|.. ..++.+ +.++..++|+ +++....++.. .+++.  +...|++ +.
T Consensus       334 vg~A~GlA~~G------~~p~~~~--f~~F~~-ra~dQi~~~~a~~~~pv-~~v~~~~G~~g~dG~tH--~~~edia-~l  400 (580)
T PRK05444        334 VTFAAGLATEG------LKPVVAI--YSTFLQ-RAYDQVIHDVALQNLPV-TFAIDRAGLVGADGPTH--QGAFDLS-YL  400 (580)
T ss_pred             HHHHHHHHHCC------CeeEEEe--eHHHHH-HHHHHHHHHhhhcCCCE-EEEEeCCCcCCCCCccc--cccHHHH-HH
Confidence            45688888732      2344444  455654 455544 4477889994 55555444432 12222  2234555 44


Q ss_pred             hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ++. |+.++.=  .|+.|+..+++.|++..++|++|-
T Consensus       401 r~iP~l~V~~P--sd~~e~~~~l~~a~~~~~~P~~ir  435 (580)
T PRK05444        401 RCIPNMVIMAP--SDENELRQMLYTALAYDDGPIAIR  435 (580)
T ss_pred             hcCCCCEEEee--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence            544 8888864  389999999999985557998864

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=94.32  E-value=0.42  Score=43.37  Aligned_cols=107  Identities=12%  Similarity=0.012  Sum_probs=65.0

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...++|+|++.-+-....+.   ...+...|...+
T Consensus        79 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~---~~~~q~~d~~~l  148 (612)
T PRK07789         79 QGAGHAAEGYAQATGR----VGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG---TDAFQEADIVGI  148 (612)
T ss_pred             HHHHHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCcCcccchhhh
Confidence            3444567777766431    23455556787776   3457889999999966555432222211   111222366677


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+--...+|+  +++++.+.+++|+..    .+||++|++-
T Consensus       149 ~~~~tk~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP  189 (612)
T PRK07789        149 TMPITKHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIP  189 (612)
T ss_pred             hhcceeEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence            777755555675  777777777777642    2589999873

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=94.30  E-value=0.35  Score=43.15  Aligned_cols=105  Identities=13%  Similarity=-0.004  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-.......   ......|...++
T Consensus        49 ~A~~~Adgyar~sg~----~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~  118 (548)
T PRK08978         49 GAAMAAIGYARATGK----VGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT---DAFQEIDVLGLS  118 (548)
T ss_pred             HHHHHHHHHHHHhCC----CEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhccc
Confidence            344467777776531    23455556888876   44579999999999665544333222211   111123455567


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+=-...+|+  +++++...+++|++.    .+||+.|++
T Consensus       119 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i  157 (548)
T PRK08978        119 LACTKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDI  157 (548)
T ss_pred             cCceeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEec
Confidence            76654556775  777777777777642    258999986

>PTZ00089 transketolase; Provisional

Probab=94.28  E-value=0.54  Score=43.19  Aligned_cols=102  Identities=14%  Similarity=0.033  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~  135 (176)
                      .+..|.|+|+...     -+++++..  ..|.+ ...+.+..++..+||+ ++|....+.+  .++++.  ++..|++ +
T Consensus       415 mv~~AaGlA~~~G-----~~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV-~~v~thdg~~~g~DG~TH--q~iedia-~  482 (661)
T PTZ00089        415 MCAIMNGIAAHGG-----FIPFGATF--LNFYG-YALGAVRLAALSHHPV-IYVATHDSIGLGEDGPTH--QPVETLA-L  482 (661)
T ss_pred             HHHHHHHHHHcCC-----CeEEEEeh--HHHHH-HHHHHHHHHHhcCCCe-EEEEeCCceecCCCCCCc--ccHHHHH-H
Confidence            3556777777222     24666665  47765 6778899999999994 5555444444  333332  2335555 5


Q ss_pred             Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .++. ++.+++=  .|..|+..+++.|+...++|+.|-.
T Consensus       483 lR~iPn~~V~~P--aD~~E~~~~l~~al~~~~gP~~irl  519 (661)
T PTZ00089        483 LRATPNLLVIRP--ADGTETSGAYALALANAKTPTILCL  519 (661)
T ss_pred             HhcCCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence            5655 7777653  3899999999999865678987753

>PRK05899 transketolase; Reviewed

Probab=94.17  E-value=0.66  Score=42.27  Aligned_cols=102  Identities=16%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.-.     -+++++..  ..|. ...++.+.+.+..++| +++|....+++.  .+.+.  ++..|++-+
T Consensus       379 ~vg~A~GlA~~G~-----~~pv~~t~--~~F~-~r~~~qir~~~~~~~p-v~~v~~~~G~~~g~~G~tH--q~~edia~~  447 (624)
T PRK05899        379 MAAIANGLALHGG-----FIPFGGTF--LVFS-DYARNAIRLAALMKLP-VIYVFTHDSIGVGEDGPTH--QPVEQLASL  447 (624)
T ss_pred             HHHHHHHHHHcCC-----CeEEEEEc--HHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcCcCCCCCCc--ccHHHHHHH
Confidence            3566777776431     23444433  4554 3677888888888999 456666666543  33333  334555533


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.-  .|+.++...++.+++..++|++|-
T Consensus       448 r~iP~~~V~~P--~d~~e~~~~l~~a~~~~~~P~~ir  482 (624)
T PRK05899        448 RAIPNLTVIRP--ADANETAAAWKYALERKDGPSALV  482 (624)
T ss_pred             HhCCCcEEEeC--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence            33338887754  489999999999985447998774

>PRK07586 hypothetical protein; Validated

Probab=94.14  E-value=0.46  Score=41.98  Aligned_cols=106  Identities=10%  Similarity=-0.057  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.|.....    -..+++..|-|.++   ..-.+..|...+.|+|++.-+-......   .......|...++
T Consensus        50 ~A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~  119 (514)
T PRK07586         50 VATGAADGYARMAGK----PAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK---YDAPLTSDIEALA  119 (514)
T ss_pred             HHHHHHHHHHHHHCC----CEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC---CCcccccchhhhh
Confidence            334467777765431    13345556888765   3446888999999965554332211111   1111123566788


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      +.+--...+|.  +++++.+.+++|+.    ..+||++|++-
T Consensus       120 ~~vtk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP  159 (514)
T PRK07586        120 RPVSGWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILP  159 (514)
T ss_pred             ccccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            87755556674  67666666666654    23689999863

>PRK11269 glyoxylate carboligase; Provisional

Probab=94.13  E-value=0.43  Score=43.06  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHhc-hhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           58 GLSVAAGMAYVG-KYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        58 ~l~~AvG~A~a~-~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      +.-+|-|.|... ..    -..+++..|-|.++   ..-++..|..-+.|+|++.-+-...... .  ..+...|...++
T Consensus        54 A~~mAdGYar~t~g~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~-~--~~~q~~d~~~l~  123 (591)
T PRK11269         54 ASHMAEGYTRATAGN----IGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH-K--EDFQAVDIESIA  123 (591)
T ss_pred             HHHHHHHHHHHcCCC----cEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC-C--CcccccChhhHh
Confidence            445677877765 31    23445556888886   3446889999999966554432222111 1  112223566777


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +.+=-...+|+  +++++.+.+++|++.    .+||+.|++-
T Consensus       124 ~~itk~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  163 (591)
T PRK11269        124 KPVTKWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLP  163 (591)
T ss_pred             hcceeEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            77655555674  788777777777652    3589999874

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=94.09  E-value=0.46  Score=42.60  Aligned_cols=106  Identities=13%  Similarity=0.021  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-.-....+ .  .......|...+
T Consensus        55 ~~A~~~Adgyar~tg~----~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~~  124 (561)
T PRK06048         55 QAAAHAADGYARATGK----VGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI-G--NDAFQEADITGI  124 (561)
T ss_pred             HHHHHHHHHHHHHhCC----CeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc-C--CCCccccchhhh
Confidence            3445567777776531    23455556888886   345799999999996655432211111 1  111112355667


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      ++.+=-..++|+  +++++.+.+++|++.    .+||+.|++
T Consensus       125 ~~~itk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~i  164 (561)
T PRK06048        125 TMPITKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDL  164 (561)
T ss_pred             ccCcceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEec
Confidence            777654455674  777777777776642    358999986

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.09  E-value=0.49  Score=42.43  Aligned_cols=106  Identities=13%  Similarity=-0.026  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+....    .-..+++..|-|.++   ..-++..|...+.|+|++.-.-......   .......|...++
T Consensus        52 ~A~~~Adgyar~tg----~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~  121 (563)
T PRK08527         52 AAVHAADGYARASG----KVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG---TDAFQEIDAVGIS  121 (563)
T ss_pred             HHHHHHHHHHhhhC----CCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCCCcccchhhhh
Confidence            33446677776543    123455566888886   3457889999999966554321111111   1111223556677


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +.+--...+|+  +++++.+++++|++.    .+||+.|++-
T Consensus       122 ~~~tk~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP  161 (563)
T PRK08527        122 RPCVKHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIP  161 (563)
T ss_pred             hcccceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence            77754455674  888888888888753    2489999863

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.03  E-value=0.53  Score=42.57  Aligned_cols=107  Identities=15%  Similarity=0.006  Sum_probs=64.4

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-..... ..  ..+...|...+
T Consensus        59 ~~A~~mAdgyar~tg~----~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~-~~--~~~q~~d~~~l  128 (595)
T PRK09107         59 QGAGHAAEGYARSTGK----PGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLI-GS--DAFQECDTVGI  128 (595)
T ss_pred             HHHHHHHHHHHHHhCC----CEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhc-CC--CCCcccchhhh
Confidence            3344467777765431    23455556888886   345788999999996655433221111 11  11222355667


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+--...+|+  +++++.+.+++|++.    .+||+.|++-
T Consensus       129 ~~~vtk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP  169 (595)
T PRK09107        129 TRPCTKHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIP  169 (595)
T ss_pred             hhhheEEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecC
Confidence            777655555675  788877777777653    3589999863

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=94.03  E-value=0.52  Score=42.41  Aligned_cols=104  Identities=13%  Similarity=-0.005  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-.-.......   ..+...|...+++.
T Consensus        52 ~~~Adgyar~tg~----~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~---~~~Q~~d~~~l~~~  121 (579)
T TIGR03457        52 GHMADGFARVTGR----MSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGL---GGFQEADQLPMFQE  121 (579)
T ss_pred             HHHHHHHHHHhCC----CEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCC---CCCcccchhhhhhc
Confidence            4467777765431    23444555888886   34579999999999655542212111111   11112355667777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      +--...++.  +++++.+.+++|+.   ..+||+.|++-
T Consensus       122 vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP  158 (579)
T TIGR03457       122 FTKYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIP  158 (579)
T ss_pred             ceeEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            755555664  66666655555543   23689999873

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=94.02  E-value=0.58  Score=42.06  Aligned_cols=105  Identities=12%  Similarity=-0.018  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-.-..... .  ...+...|...+++
T Consensus        54 A~~mAdgyar~tg~----~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~-~--~~~~q~~d~~~~~~  123 (572)
T PRK08979         54 AVHMADGYARATGK----VGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLI-G--NDAFQECDMIGISR  123 (572)
T ss_pred             HHHHHHHHHHHhCC----CeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCcccc-C--CCCCcccchhHHhh
Confidence            34467777776431    23445555888776   345688999999996655433221111 1  11122235667777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+=-...+|+  +++++...+++|++.    .+||+.|++-
T Consensus       124 ~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  162 (572)
T PRK08979        124 PVVKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLP  162 (572)
T ss_pred             hceeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecC
Confidence            7654555775  787777777777642    3589999863

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=94.02  E-value=0.52  Score=42.22  Aligned_cols=104  Identities=19%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-......   ...+...|...+++
T Consensus        63 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~~  132 (564)
T PRK08155         63 AGFIAQGMARTTGK----PAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG---TDAFQEVDTYGISI  132 (564)
T ss_pred             HHHHHHHHHHHcCC----CeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc---CCCccccchhhhhh
Confidence            34467788876531    12334444777776   3457889999999966554332221111   11111234556677


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      .+--...+++  +++++...+++|++.    .+||+.|++
T Consensus       133 ~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~i  170 (564)
T PRK08155        133 PITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDI  170 (564)
T ss_pred             ccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence            6654555674  677777767666642    258999986

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=94.02  E-value=0.54  Score=42.47  Aligned_cols=105  Identities=16%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+..   +.-..+++..|-|.++   ..-++..|...+.|+|++.-+-...... .  ..+...|...+++.
T Consensus        54 ~~mAdgyaR~t~---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~-~--~~~q~~D~~~~~~~  124 (588)
T TIGR01504        54 SHMAEGYTRATA---GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLH-K--EDFQAVDIAAIAKP  124 (588)
T ss_pred             HHHHHHHHHhcC---CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC-C--CcccccCHHHHhhh
Confidence            446677776541   0112344445888776   3457889999999966554332221111 1  11222356678887


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +--...+|.  +++++.+.+++|++.    .+||++|++-
T Consensus       125 vtk~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP  162 (588)
T TIGR01504       125 VSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLP  162 (588)
T ss_pred             hceEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeC
Confidence            765566775  788877777777652    3489999874

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=94.00  E-value=0.63  Score=41.82  Aligned_cols=105  Identities=15%  Similarity=0.004  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|..+   ..-++..|...++|+|++.-+-..... ..  ......|...+++
T Consensus        61 A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~-~~--~~~Q~~d~~~l~~  130 (578)
T PRK06112         61 GGAMADGYARVSGK----VAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQT-DR--NAFQELDHIALFQ  130 (578)
T ss_pred             HHHHHHHHHHHhCC----CEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC-CC--CCccccChhhhhc
Confidence            34467777776531    23455555777776   345688899999996655433221111 11  1111235567788


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+--...+++  +++++.+.+++|+.    ..+||+.|++-
T Consensus       131 ~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP  169 (578)
T PRK06112        131 SCTKWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLP  169 (578)
T ss_pred             cccceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence            8766666775  66666666666654    23589999874

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.94  E-value=0.68  Score=41.55  Aligned_cols=105  Identities=11%  Similarity=-0.053  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|=|.++   ..-++..|...+.|+|++.-+-..... .  .......|...+++
T Consensus        54 A~~mAdgyar~tg~----~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~-~--~~~~q~~d~~~l~~  123 (574)
T PRK06882         54 AVHMADGYARSTGK----VGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLI-G--TDAFQECDMLGISR  123 (574)
T ss_pred             HHHHHHHHHHhhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc-C--CCcccccchhhhhh
Confidence            34467777766431    23455556888776   345788999999996555432221111 1  11111235567777


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+=-...+|.  +++++...+++|+..    .+||+.|++-
T Consensus       124 ~vtk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  162 (574)
T PRK06882        124 PVVKHSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIP  162 (574)
T ss_pred             cccceEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecC
Confidence            7755566774  777776666666642    3589999863

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=93.93  E-value=0.83  Score=42.22  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCcc-ccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~~~~~~~  134 (176)
                      ..+..|.|+|..-      -++++++.  ..|.+ ..++-+ .-++..++|+ .++++..++.. .+++  -....|++ 
T Consensus       434 haVt~AAGLA~~G------~kPvv~iy--stFlq-RAyDQI~~Dval~~lpV-~~vid~aGlvg~DG~T--H~g~~Dia-  500 (701)
T PLN02225        434 HAVTFSAGLSSGG------LKPFCIIP--SAFLQ-RAYDQVVHDVDRQRKAV-RFVITSAGLVGSDGPV--QCGAFDIA-  500 (701)
T ss_pred             HHHHHHHHHHHCC------CEEEEEee--hhHHH-HHHHHHHHHHHhhcCCc-eEEEECCccCCCCCcc--ccccHHHH-
Confidence            3455677777632      36788877  46755 344433 4467889995 55566555432 1222  12345665 


Q ss_pred             HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      +++.. |+.++.=  .|..|+...++.|+...++|+.|-
T Consensus       501 ~lr~IPnm~V~aP--sD~~El~~mL~~A~~~~~gPv~IR  537 (701)
T PLN02225        501 FMSSLPNMIAMAP--ADEDELVNMVATAAYVTDRPVCFR  537 (701)
T ss_pred             HHhcCCCCEEEee--CCHHHHHHHHHHHHhcCCCCEEEE
Confidence            44444 8887754  389999999999875556898873

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=93.92  E-value=0.43  Score=42.85  Aligned_cols=107  Identities=13%  Similarity=-0.006  Sum_probs=64.4

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-.......   ..+...|...+
T Consensus        58 ~~A~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~  127 (566)
T PRK07282         58 QGALHEAEGYAKSTGK----LGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIGK---DAFQEADIVGI  127 (566)
T ss_pred             HHHHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCCC---CCccccChhch
Confidence            3445567777765431    23556666888887   34578899999999666554323222211   11112345567


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ++.+--...+++  +++++.+.+++|++.    .+||+.|++-
T Consensus       128 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP  168 (566)
T PRK07282        128 TMPITKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLP  168 (566)
T ss_pred             hcCCCceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence            777755555674  677776666666643    3589999873

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.90  E-value=0.73  Score=41.58  Aligned_cols=105  Identities=12%  Similarity=-0.004  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-.-......   .......|...+++
T Consensus        71 A~~~AdgYar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~l~~  140 (587)
T PRK06965         71 AVHAADGYARATGK----VGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG---QDAFQECDTVGITR  140 (587)
T ss_pred             HHHHHHHHHHHhCC----CeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC---CCCcccccHHHHhc
Confidence            34467777776531    23445555777776   3456889999999965554221111111   11122246667788


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+--...+|.  +++++.+.+++|+.    ..+||+.|++-
T Consensus       141 ~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  179 (587)
T PRK06965        141 PIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP  179 (587)
T ss_pred             CCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            7765566674  67666666655553    23589999873

>PRK08617 acetolactate synthase; Reviewed

Probab=93.89  E-value=0.53  Score=42.05  Aligned_cols=103  Identities=15%  Similarity=0.075  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+....    .-..+++..|-|.++   ..-++..|...+.|+|++.-......+..   ......|...+++.
T Consensus        55 ~~~A~gyar~tg----~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~---~~~q~~d~~~l~~~  124 (552)
T PRK08617         55 AFMAAAIGRLTG----KPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK---RTHQSMDNVALFRP  124 (552)
T ss_pred             HHHHHhHhhhcC----CCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC---CCccccchhhhhhh
Confidence            335667666542    113444455888876   34568899999999665544322211111   11112355667777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +--...+++  +++++...+++|++.    .+||+.|++
T Consensus       125 ~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~i  161 (552)
T PRK08617        125 ITKYSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSL  161 (552)
T ss_pred             hcceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeC
Confidence            755566775  777777777777652    358999986

>PRK12753 transketolase; Reviewed

Probab=93.84  E-value=0.68  Score=42.59  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      .++.|.|+|+...     -+++++..  ..|.+ ..++.+..++..++| +++|....+++.......-++..|++ +.+
T Consensus       414 mv~~aaGlA~~~G-----~~P~~~tf--~~F~~-r~~~qir~~a~~~l~-V~~v~thdg~~~G~DG~THq~iedla-~lR  483 (663)
T PRK12753        414 MTAIANGIAHHGG-----FVPYTATF--LMFVE-YARNAARMAALMKAR-QIMVYTHDSIGLGEDGPTHQPVEQLA-SLR  483 (663)
T ss_pred             HHHHHHHHHHhCC-----CeEEEEeh--HHHHH-HHHHHHHHHHhcCCC-eEEEEeCCCcccCCCCcccccHHHHH-HHh
Confidence            3567778887321     13455444  46655 678889998999999 55665556655532222223345554 556


Q ss_pred             hc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          138 AF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       138 a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +. ++.+++-  .|..|+..+++.|++..++|+.|-.
T Consensus       484 ~iPn~~v~~P--aD~~E~~~~~~~al~~~~gP~~irl  518 (663)
T PRK12753        484 LTPNFSTWRP--CDQVEAAVAWKLAIERHNGPTALIL  518 (663)
T ss_pred             cCCCCEEEcc--CCHHHHHHHHHHHHhcCCCCEEEEe
Confidence            65 7777754  3899999999999864678987753

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=93.80  E-value=0.41  Score=38.22  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      ++..++|++++-+       ++++.+.=.++.  ...|.|.+++..++|+++++++-.+=+-..++  .....|+. .++
T Consensus        48 A~~~~~GAs~aG~-------ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~--~~~q~D~~-~~~  115 (230)
T PF01855_consen   48 AMEAAIGASAAGA-------RAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLST--QPEQDDLM-AAR  115 (230)
T ss_dssp             HHHHHHHHHHTT---------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB----SB-SHHHH-HTT
T ss_pred             HHHHHHHHHhcCC-------ceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcC--cCChhHHH-HHH
Confidence            4677889888743       566666666665  35678999999999976666653321110111  11123433 455


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      -+||..+...  |++|..+....|++   +.+-|+++-
T Consensus       116 d~~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~  151 (230)
T PF01855_consen  116 DSGWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVL  151 (230)
T ss_dssp             TSS-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             hcCeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            7888877664  88888777777754   346788763

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=93.80  E-value=0.88  Score=41.98  Aligned_cols=106  Identities=14%  Similarity=0.102  Sum_probs=64.5

Q ss_pred             Cccc-chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHH-HHHHhhhcCCCcEEEEEecCCCcc-ccCcccccc
Q psy786           52 TGSL-GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWE-ALHFASYYKLDNLCVIFDINRLGQ-SEPTSLQHQ  128 (176)
Q Consensus        52 ~g~~-G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~e-al~~a~~~~lp~liiV~~nn~~~~-~~~~~~~~~  128 (176)
                      .|.- ...++.|.|+|+.-      -++++++.  ..|.+ ..++ -+..++..++| ++++++..++.. .+++.  ..
T Consensus       403 vGIAEq~~vg~AaGLA~~G------~kPvv~~f--s~Fl~-RA~DQI~~dval~~lp-Vv~v~~~aG~vg~dG~TH--~~  470 (677)
T PLN02582        403 VGIAEQHAVTFAAGLACEG------LKPFCAIY--SSFLQ-RGYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH--CG  470 (677)
T ss_pred             cCcCHHHHHHHHHHHHHCC------CeEEEEec--HHHHH-HHHHHHHHHHHhcCCC-EEEEEECCCcccCCCCcc--cc
Confidence            3444 33456677877732      35666664  45654 3444 34666788999 556666555432 22222  22


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..|++ +++.. |+.++.=  .|..|++.+++.|+...++|++|-
T Consensus       471 ~~Dia-~lr~iPnl~V~~P--sd~~E~~~~l~~al~~~~gPv~IR  512 (677)
T PLN02582        471 AFDVT-YMACLPNMVVMAP--SDEAELFHMVATAAAIDDRPSCFR  512 (677)
T ss_pred             cHHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCCEEEE
Confidence            34554 34444 8887754  389999999999985556898874

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=93.64  E-value=0.85  Score=41.30  Aligned_cols=100  Identities=12%  Similarity=0.066  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHH-HHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWE-ALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~e-al~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .++.|.|+|+.-      -+++++...+  |.+ ..++ -.+.++..++| ++++++..++...+++.  ++..|++ +.
T Consensus       332 ~v~~AaGlA~~G------~~Pvv~~fs~--Fl~-ra~dQi~~d~a~~~lp-v~~~~~~~g~~~dG~TH--~~~~Dia-~l  398 (581)
T PRK12315        332 SVAFASGIAANG------ARPVIFVNST--FLQ-RAYDQLSHDLAINNNP-AVMIVFGGSISGNDVTH--LGIFDIP-MI  398 (581)
T ss_pred             HHHHHHHHHHCc------CeEEEEeeHH--HHH-HHHHHHHHHHHhcCCC-EEEEEECCcccCCCccc--cccHHHH-HH
Confidence            356677877632      2456555543  543 3334 23446778999 56666766655433332  2234554 45


Q ss_pred             hhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ++. |+.++.=  .|+.|+..+++.|+...++|+.|-
T Consensus       399 r~iPnl~V~~P--~d~~e~~~~l~~a~~~~~gP~~ir  433 (581)
T PRK12315        399 SNIPNLVYLAP--TTKEELIAMLEWALTQHEHPVAIR  433 (581)
T ss_pred             hcCCCCEEEec--CCHHHHHHHHHHHHhCCCCcEEEE
Confidence            554 8877743  389999999999985447898774

>PLN02683 pyruvate dehydrogenase E1 component subunit beta

Probab=93.53  E-value=1.4  Score=37.40  Aligned_cols=99  Identities=8%  Similarity=-0.027  Sum_probs=57.4

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHH-HHHhhhcC--------CCcEEEEEecCCCccccCccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEA-LHFASYYK--------LDNLCVIFDINRLGQSEPTSL  125 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~ea-l~~a~~~~--------lp~liiV~~nn~~~~~~~~~~  125 (176)
                      ...++.|.|+|++-.      ++++++. .|-..   ..++- .+.++.++        +|+ +++..+....-.+.+. 
T Consensus        84 q~~vg~AaGlA~~G~------~P~v~~~~~~f~~---ra~dQi~~dva~~~~~~~g~~~~pV-~i~~~~G~~~g~G~tH-  152 (356)
T PLN02683         84 AGFTGIGVGAAYAGL------KPVVEFMTFNFSM---QAIDHIINSAAKTNYMSAGQISVPI-VFRGPNGAAAGVGAQH-  152 (356)
T ss_pred             HHHHHHHHHHHHCCC------EEEEEEehhhHHH---HHHHHHHHHHHHhccccCCCccCCE-EEEEeCCCCCCCCCcc-
Confidence            445667888887532      4555553 22221   23333 34555554        994 4555553321122222 


Q ss_pred             ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                        ...+ ..++++. |+.++.=  .|..|++..++.|+ ..++|+.|
T Consensus       153 --~~~~-~a~lr~iPnl~V~~P--ad~~e~~~~l~~a~-~~~gPv~i  193 (356)
T PLN02683        153 --SQCF-AAWYSSVPGLKVLAP--YSSEDARGLLKAAI-RDPDPVVF  193 (356)
T ss_pred             --ccCH-HHHHhcCCCCEEEEe--CCHHHHHHHHHHHH-hCCCcEEE
Confidence              1223 3566666 8888854  38999999999998 46789887

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=93.51  E-value=0.74  Score=41.51  Aligned_cols=105  Identities=14%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-....+..   ..+...|...++
T Consensus        62 ~A~~~Adgyar~tg~----~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~  131 (585)
T CHL00099         62 GAAHAADGYARSTGK----VGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIGT---DAFQEVDIFGIT  131 (585)
T ss_pred             HHHHHHHHHHHhcCC----cEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC---CCccccchhhhh
Confidence            334467777765431    23455555888876   34578899999999766654433222211   111123455667


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+--...+|+  +++++.+.+++|++.    .+||+.|++
T Consensus       132 ~~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~i  170 (585)
T CHL00099        132 LPIVKHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDI  170 (585)
T ss_pred             cCceeEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEec
Confidence            76654455675  777777777777642    258999986

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=93.43  E-value=1.1  Score=39.41  Aligned_cols=99  Identities=10%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEE-CCCccCCchHHHHHHHhh--------hcCCCcEEEEEecCCCccccCccccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLV-GDGESAEGSIWEALHFAS--------YYKLDNLCVIFDINRLGQSEPTSLQH  127 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~-GDG~~~~G~~~eal~~a~--------~~~lp~liiV~~nn~~~~~~~~~~~~  127 (176)
                      ..++.|.|+|++-.      ++++.+. .+-..+  ..-+-.+.++        .+++| ++|+..|.++...+.   .+
T Consensus       200 ~~vg~AaGlA~~G~------rPiv~~~~~~f~~r--a~dQI~n~~ak~~~~sgg~~~~p-Vv~~g~~G~~~~~G~---hh  267 (464)
T PRK11892        200 GFAGIGVGAAFAGL------KPIVEFMTFNFAMQ--AIDQIINSAAKTLYMSGGQMGCP-IVFRGPNGAAARVAA---QH  267 (464)
T ss_pred             HHHHHHHHHHhCCC------EEEEEEehHHHHHH--HHHHHHHHHhHHhhhcCCccCCC-EEEEecCCCCCCCCC---cc
Confidence            34667888887532      4566554 222221  1223335555        78999 555566666544332   22


Q ss_pred             ccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          128 QTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       128 ~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      +..+ ..+++.. |++++.=  .|+.+.+..++.|+ +.++|++|
T Consensus       268 s~~d-~a~~~~iPgl~V~~P--~d~~d~~~ll~~ai-~~~~Pv~i  308 (464)
T PRK11892        268 SQDY-AAWYSHIPGLKVVAP--YSAADAKGLLKAAI-RDPNPVIF  308 (464)
T ss_pred             ccCH-HHHHhhCCCCEEEEe--CCHHHHHHHHHHHh-hCCCcEEE
Confidence            2233 4566666 8888854  38999999999998 46789886

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=93.37  E-value=0.94  Score=40.54  Aligned_cols=105  Identities=13%  Similarity=0.044  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+ -.......  ......|...++
T Consensus        57 ~A~~~Adgyar~tg~----~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~-~~~~~~~~--~~~q~~d~~~l~  126 (557)
T PRK08199         57 GAAMMAEAYGKLTGR----PGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQ-VARDFRER--EAFQEIDYRRMF  126 (557)
T ss_pred             HHHHHHHHHHHhcCC----CEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecC-CccccCCC--CcccccCHHHhh
Confidence            334467777776531    23455555888886   445788999999995554432 11111111  111123555667


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+=-...+|.  +++++.+.+++|++.    .+||+.|++
T Consensus       127 ~~~tk~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~i  165 (557)
T PRK08199        127 GPMAKWVAEID--DAARIPELVSRAFHVATSGRPGPVVLAL  165 (557)
T ss_pred             hhhhceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence            76643445564  777766666666642    358999986

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=93.36  E-value=1.5  Score=37.85  Aligned_cols=102  Identities=13%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .++.+|+|++++-       .++.+.+.=.++.  ...|.|.+|+-..+|+++++. |....  ++........|+. .+
T Consensus        60 aA~~~aiGAs~aG-------aRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~-~R~~p--~~~~~~~~q~D~~-~~  126 (390)
T PRK08366         60 SAMAACIGASAAG-------ARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDV-NRAMA--PPWSVWDDQTDSL-AQ  126 (390)
T ss_pred             HHHHHHHHHHhhC-------CCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEe-ccCCC--CCCCCcchhhHHH-HH
Confidence            4577899999874       4677777777776  478999999999999544443 23322  2222221223443 23


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      +--||-.+..  .|++|......+|+.   +.+-|+++-.
T Consensus       127 ~d~g~i~~~~--~~~QEa~d~t~~Af~lAE~~~~PViv~~  164 (390)
T PRK08366        127 RDTGWMQFYA--ENNQEVYDGVLMAFKVAETVNLPAMVVE  164 (390)
T ss_pred             hhcCEEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence            4447744444  488887777777764   3467887643

>PRK12474 hypothetical protein; Provisional

Probab=93.35  E-value=0.9  Score=40.29  Aligned_cols=103  Identities=12%  Similarity=-0.099  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-..+......   ..+...|...+++.
T Consensus        56 ~~mAdgYaR~tg~----~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~  125 (518)
T PRK12474         56 TGAADGYGRIAGK----PAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY---DAPLTSDIDGFARP  125 (518)
T ss_pred             HHHHHHHHHHhCC----CEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC---CCccccCHHHhhhc
Confidence            3456677765431    23445555888775   33468888999999666654322211111   11112356677777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +--...+++  +++++.+++++|++.    ..+|++|++
T Consensus       126 vtk~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~i  162 (518)
T PRK12474        126 VSRWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIM  162 (518)
T ss_pred             ccceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            654455664  788777777777642    348999986

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=93.33  E-value=0.8  Score=40.78  Aligned_cols=104  Identities=14%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-......   ...+...|...+++.
T Consensus        49 ~~~Adgyar~tg~----~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~~d~~~~~~~  118 (539)
T TIGR02418        49 AFMAQAVGRITGK----PGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL---KLTHQSMDNVALFRP  118 (539)
T ss_pred             HHHHHHHHHHhCC----ceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc---cCcccccchhhhhhc
Confidence            3356676665431    23455555888776   3457888999999966554432221111   111222345667777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      +=-...+++  +++++.+.+++|++.    .+||+.|++-
T Consensus       119 ~tk~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP  156 (539)
T TIGR02418       119 ITKYSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLP  156 (539)
T ss_pred             ceeeeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            644445664  777776666666542    3589999863

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=93.21  E-value=0.63  Score=41.84  Aligned_cols=108  Identities=16%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC----c-cccccc-HH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP----T-SLQHQT-EV  131 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~----~-~~~~~~-~~  131 (176)
                      +.-+|-|.+.....    -..+++..|-|.++   ..-++..|...+.|+|++.-+-........    . ...+.. .|
T Consensus        62 A~~~Adgyar~tgk----~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d  134 (569)
T PRK08327         62 AISMAHGYALVTGK----PQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRD  134 (569)
T ss_pred             HHHHHHHHHHhhCC----CeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhh
Confidence            34467777765431    23455556888876   445799999999996655543221111110    0 001112 36


Q ss_pred             HHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          132 YRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       132 ~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      ...+++.+--...+++  +++++.+++++|+..    .+||++|++-
T Consensus       135 ~~~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP  179 (569)
T PRK08327        135 QGGLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP  179 (569)
T ss_pred             HHHHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence            6677777654555675  777877777777652    3689999863

>PRK05858 hypothetical protein; Provisional

Probab=93.18  E-value=1.2  Score=39.85  Aligned_cols=106  Identities=12%  Similarity=-0.042  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|-|.+.+...    -..+++..|=|.++   ..-++..|...+.|+|++ .-+......+..  .....|...++
T Consensus        53 ~A~~~AdGyar~tg~----~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i-~g~~~~~~~~~~--~~q~~d~~~l~  122 (542)
T PRK05858         53 TAAFAAEAWAKLTRV----PGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVL-GGRAPALRWGMG--SLQEIDHVPFV  122 (542)
T ss_pred             HHHHHHHHHHHhcCC----CeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEE-eCCCCcccCCCC--CCcccchhhhh
Confidence            334467788776531    22344444676665   345789999999995544 322222111111  11113455677


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      +.+--...+++  +++++.+.+++|+.    ..+||+.|++-
T Consensus       123 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  162 (542)
T PRK05858        123 APVTKFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFP  162 (542)
T ss_pred             hhhhceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcC
Confidence            77765566775  67666666666654    23589999863

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=93.17  E-value=0.74  Score=41.64  Aligned_cols=104  Identities=11%  Similarity=-0.029  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-......   ...+...|...+++.
T Consensus        55 ~~~Adgyar~tg~----~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~---~~~~q~~d~~~l~~~  124 (597)
T PRK08273         55 AFMAVAHAKFTGE----VGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG---GHYQQEVDLQSLFKD  124 (597)
T ss_pred             HHHHHHHHHHhCC----CEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC---CCCCCccCHHHHHHH
Confidence            3467777766531    23455555888887   3456889999999966554321111111   111112344556666


Q ss_pred             cC-ceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          139 FG-FNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       139 ~G-~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      .- -...+++  +++++.+.+++|+.   ..++|+.|++-
T Consensus       125 vt~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP  162 (597)
T PRK08273        125 VAGAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILP  162 (597)
T ss_pred             HHHHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            54 3344664  66665555555543   24689999874

>PRK09212 pyruvate dehydrogenase subunit beta; Validated

Probab=93.12  E-value=1.5  Score=36.70  Aligned_cols=100  Identities=11%  Similarity=-0.003  Sum_probs=55.4

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHH-HHHhhhc--------CCCcEEEEEecCCCccccCcccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEA-LHFASYY--------KLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~ea-l~~a~~~--------~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ...++.|.|+|+.-.      ++++++..- .|.+ ..++- .+.++..        ++| +++...+..++..+.+..+
T Consensus        61 ~~~vg~AaGlA~~G~------~Piv~~~~~-~f~~-ra~dQi~~d~a~~~~~~~~~~~v~-vv~~~~~g~~~~~G~tH~~  131 (327)
T PRK09212         61 HGFAGLAVGAAFAGL------RPIVEFMTF-NFSM-QAIDQIVNSAAKTNYMSGGQLKCP-IVFRGPNGAAARVAAQHSQ  131 (327)
T ss_pred             HHHHHHHHHHHHcCC------eeEEEeehh-hHHH-HHHHHHHHHHHHHhhccCCCcCcc-EEEEeCCCCCCCCCccccc
Confidence            344667888887432      466665531 1211 12222 2333333        566 3344444444443333222


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      .    +..++++. |+.++.=  .|+.+++.+++.|++ .++|++|
T Consensus       132 ~----~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~-~~~Pv~i  170 (327)
T PRK09212        132 C----YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR-DPNPVIF  170 (327)
T ss_pred             C----HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh-CCCcEEE
Confidence            1    23566665 8887743  389999999999984 5899887

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=92.84  E-value=0.96  Score=40.41  Aligned_cols=106  Identities=11%  Similarity=-0.035  Sum_probs=56.9

Q ss_pred             HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--ccccc-cHHHHHHHh
Q psy786           61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--SLQHQ-TEVYRKRLD  137 (176)
Q Consensus        61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~~~~~-~~~~~~~a~  137 (176)
                      +|-|.|.+...    -..+++..|-|.++   ..-++..|...++|+|++.-+-.........  +.+.. .++..++++
T Consensus        53 ~Adgyar~tg~----~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (535)
T TIGR03394        53 AADAAARYRGT----LGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFK  125 (535)
T ss_pred             HHhHHHHhhCC----ceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhh
Confidence            56677765531    23556666888887   3456889999999965554221111111100  01111 123456677


Q ss_pred             hcCceEEEec-CC-CHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          138 AFGFNAVVVD-GH-DVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vd-G~-d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ..--...+|. .. -++.+.+|++.|+. .++|++|++-
T Consensus       126 ~vtk~~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP  163 (535)
T TIGR03394       126 EVTCDQAVLDDPATAPAEIARVLGSARE-LSRPVYLEIP  163 (535)
T ss_pred             hheEEEEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEec
Confidence            6643344553 11 13455666666653 5689999873

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=92.49  E-value=1.7  Score=38.97  Aligned_cols=100  Identities=12%  Similarity=0.037  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .-+|-|.+....      ++.+|+  .|=|.++   ..-++..|..-+.|+|++.-+ ......+.  ..+...|..+++
T Consensus        54 ~~~Adgyar~tg------~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~-~~~~~~~~--~~~Q~~d~~~l~  121 (574)
T PRK09124         54 AFAAGAEAQLTG------ELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAH-IPSSEIGS--GYFQETHPQELF  121 (574)
T ss_pred             HHHHHHHHHhhC------CcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecC-CccccCCC--CCccccChhhhc
Confidence            346777776542      345555  4777665   334688888999996555432 12111111  111123445667


Q ss_pred             hhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~  173 (176)
                      +..-....+++  ++++    +.+|++.|+. .++|+.|++
T Consensus       122 ~~itk~~~~v~--~~~~~~~~i~~A~~~A~~-~~gPV~l~i  159 (574)
T PRK09124        122 RECSHYCELVS--NPEQLPRVLAIAMRKAIL-NRGVAVVVL  159 (574)
T ss_pred             ccceeeeEEeC--CHHHHHHHHHHHHHHHhc-CCCCEEEEe
Confidence            76544444564  5555    4455555542 468999986

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=92.46  E-value=1.6  Score=40.01  Aligned_cols=99  Identities=14%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.-      -++++++  =+.|.+ ..++-+ +.++..++| ++++.+..++. ..+++..  ...|+. +
T Consensus       411 ~Vg~AaGLA~~G------~rPvv~~--fs~Fl~-RA~DQI~~dva~~~lp-V~~v~~~aG~~g~dG~TH~--~~~Dia-~  477 (641)
T PLN02234        411 AVTFAAGLACEG------LKPFCTI--YSSFMQ-RAYDQVVHDVDLQKLP-VRFAIDRAGLMGADGPTHC--GAFDVT-F  477 (641)
T ss_pred             HHHHHHHHHHCC------CeEEEEe--hHHHHH-HHHHHHHHHHhhcCCC-EEEEEeCCccCCCCCcccc--ccHHHH-H
Confidence            355677777732      2455555  345543 333333 466788999 45666655542 1222221  234544 4


Q ss_pred             Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      ++.+ |+.++.-  .|+.|+..+++.|+...++|++|
T Consensus       478 lr~iPnl~V~~P--sd~~E~~~~l~~a~~~~~~Pv~i  512 (641)
T PLN02234        478 MACLPNMIVMAP--SDEAELFNMVATAAAIDDRPSCF  512 (641)
T ss_pred             HhcCCCCEEEee--CCHHHHHHHHHHHHhCCCCCEEE
Confidence            4444 8888754  38999999999987555688776

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=92.38  E-value=1.5  Score=39.43  Aligned_cols=103  Identities=12%  Similarity=-0.023  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.....    -..+++..|-|.++   ..-++..|...++|+|++.-+-......   .......|...+++.
T Consensus        51 ~~~Adgyar~tgk----~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~id~~~~~~~  120 (575)
T TIGR02720        51 ALAAAADAKLTGK----IGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN---MDTFQEMNENPIYAD  120 (575)
T ss_pred             HHHHHHHHHhhCC----ceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC---CCCcceechhhhhhh
Confidence            3356676665431    23455556887776   4457889999999966554332222211   111112344567777


Q ss_pred             cCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786          139 FGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~  174 (176)
                      +--...++.  ++++    +.+|++.|.. .+||+.|++-
T Consensus       121 vtk~~~~v~--~~~~~~~~i~~A~~~A~~-~~GPV~l~iP  157 (575)
T TIGR02720       121 VAVYNRTAM--TAESLPHVIDEAIRRAYA-HNGVAVVTIP  157 (575)
T ss_pred             cceEEEEeC--CHHHHHHHHHHHHHHHhh-CCCCEEEEEC
Confidence            654445663  4444    5556665553 5699999873

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=92.37  E-value=0.57  Score=40.59  Aligned_cols=105  Identities=14%  Similarity=0.022  Sum_probs=58.5

Q ss_pred             HHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc
Q psy786           60 SVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF  139 (176)
Q Consensus        60 ~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~  139 (176)
                      -+|-|.+.+...    -..+++..|-|.++   ..-++..|...+.|+|++.-+-...... .  ......|..++++.+
T Consensus        52 ~mAdgyar~tg~----~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~-~--~~~q~~d~~~~~~~~  121 (432)
T TIGR00173        52 FFALGLAKASGR----PVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRG-C--GANQTIDQPGLFGSY  121 (432)
T ss_pred             HHHHHHHhccCC----CEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhC-C--CCCcccchhhHHhhc
Confidence            367777776431    23455555777776   3457889999999966554332211111 0  111123455667766


Q ss_pred             CceEEEec-CCC-------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          140 GFNAVVVD-GHD-------VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       140 G~~~~~vd-G~d-------~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      --...+|. -.+       ++.+.+|++.|....+||+.|++-
T Consensus       122 tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP  164 (432)
T TIGR00173       122 VRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVP  164 (432)
T ss_pred             cceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence            54445553 122       245666666665335689999874

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=92.31  E-value=1.3  Score=39.35  Aligned_cols=106  Identities=8%  Similarity=-0.101  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.+.+...    -..+++..|-|..+   ..-++..|...+.|+|++ .-.-.+....... .....|...+++
T Consensus        60 A~~~Adgyar~tg~----~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i-~g~~~~~~~~~~~-~~~~~d~~~l~~  130 (530)
T PRK07092         60 VVGMADGYAQATGN----AAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVIT-AGQQARSILPFEP-FLAAVQAAELPK  130 (530)
T ss_pred             HHHHHHHHHHHhCC----ceEEEeccCchHHH---HHHHHHHHhhcCCCEEEE-ecCCcccccCccc-hhcccCHHHhhc
Confidence            34467788776531    23344445777774   445799999999996544 3222222211111 011124456677


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+--...+++  +++++.+.+++|+..    .+||+.|++-
T Consensus       131 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP  169 (530)
T PRK07092        131 PYVKWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIP  169 (530)
T ss_pred             ccccceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence            6643344563  677766666666542    3589999874

>PLN02790 transketolase

Probab=92.10  E-value=1.5  Score=40.23  Aligned_cols=102  Identities=10%  Similarity=0.069  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~  135 (176)
                      .+..|.|+|+.-.    .-+++++.+  .-|.. ...+++..++..++| +++|+...+.+.  ++++.  ++..|++ +
T Consensus       404 mv~~AaGlA~~G~----G~~P~~~tf--~~F~~-~~~~~ir~~al~~lp-V~~v~thdg~~~G~DG~TH--q~iedla-~  472 (654)
T PLN02790        404 MGAICNGIALHSS----GLIPYCATF--FVFTD-YMRAAMRLSALSEAG-VIYVMTHDSIGLGEDGPTH--QPIEHLA-S  472 (654)
T ss_pred             HHHHHHHHHhcCC----CcEEEEEec--HHHHH-HHHHHHHHHHhcCCC-eEEEEECCceeecCCCCCc--ccHHHHH-H
Confidence            4567778777310    123555433  12222 356678888899999 555564444443  33332  2334554 4


Q ss_pred             Hhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .++. ++.+++=  .|..|+..+++.|++..++|+.|-
T Consensus       473 lR~iPnl~V~~P--aD~~E~~~~l~~al~~~~gP~~ir  508 (654)
T PLN02790        473 LRAMPNILMLRP--ADGNETAGAYKVAVTNRKRPTVLA  508 (654)
T ss_pred             hcCCCCcEEEeC--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence            5555 7777653  389999999999986567898774

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=91.41  E-value=2.4  Score=36.32  Aligned_cols=103  Identities=14%  Similarity=0.073  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHH-HHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY-RKR  135 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~-~~~  135 (176)
                      .++..|+|++++=       .++++.+.=+++.  ...|.+.+++-..+|+++++++  .-+-++.........|+ ..+
T Consensus        58 aA~~~a~GAs~aG-------~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~--R~GpstG~p~~~~q~D~~~~~  126 (375)
T PRK09627         58 SGISVALGASMSG-------VKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVM--RGGPSTGLPTRVAQGDVNQAK  126 (375)
T ss_pred             HHHHHHHHHHhhC-------CCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEec--cCCCcCCCCCccchHHHHHHh
Confidence            4577889999874       3677777666665  3678999999999996555444  22222111111111233 222


Q ss_pred             Hhhc---CceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          136 LDAF---GFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       136 a~a~---G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      ..++   +|-.  ..-.|++|......+|++   +-+-|+++-
T Consensus       127 ~~~hgd~~~iv--l~p~~~qEa~d~t~~Af~lAE~~~~PViv~  167 (375)
T PRK09627        127 NPTHGDFKSIA--LAPGSLEEAYTETVRAFNLAERFMTPVFLL  167 (375)
T ss_pred             cCCCCCcCcEE--EeCCCHHHHHHHHHHHHHHHHHHcCceEEe
Confidence            2223   4433  344588888887777765   235688764

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=91.37  E-value=2.1  Score=38.17  Aligned_cols=107  Identities=10%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc-C---cc-cccccHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE-P---TS-LQHQTEVYR  133 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~-~---~~-~~~~~~~~~  133 (176)
                      .-+|-|.+.+..     -..+++..|-|.++   ..-++..|..-+.|+|++.-+-....... .   .. ......++.
T Consensus        52 ~~mAdgyar~tg-----~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~  123 (539)
T TIGR03393        52 AYAADGYARCKG-----AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFY  123 (539)
T ss_pred             HHHhhhhhhhcC-----ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHH
Confidence            345667776542     23455566888886   33468889999999655543211111000 0   00 000112334


Q ss_pred             HHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          134 KRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       134 ~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++++..--....++-.+ ++.+.++++.|+. .++|+.|++-
T Consensus       124 ~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~-~~gPv~l~iP  164 (539)
T TIGR03393       124 RMAAEVTVAQAVLTEQNATAEIDRVITTALR-ERRPGYLMLP  164 (539)
T ss_pred             HHhhceEEEEEEeChhhhHHHHHHHHHHHHh-cCCCEEEEec
Confidence            45554422222333234 6889999999984 5689999874

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=91.20  E-value=2.5  Score=36.51  Aligned_cols=102  Identities=14%  Similarity=0.134  Sum_probs=62.2

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      -.++.+++|++++=       .++.+.+-=.++.  ..+|.|..++-.++|++++ +-|...+.  +........|+. .
T Consensus        60 ~aA~~~~~GAs~aG-------aRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~v-v~~R~~~~--p~~i~~d~~D~~-~  126 (394)
T PRK08367         60 HSAISACVGASAAG-------VRTFTATASQGLA--LMHEVLFIAAGMRLPIVMA-IGNRALSA--PINIWNDWQDTI-S  126 (394)
T ss_pred             HHHHHHHHHHHhhC-------CCeEeeeccchHH--HHhhHHHHHHHccCCEEEE-ECCCCCCC--CCCcCcchHHHH-h
Confidence            34577889999874       3566666666665  4678999999999995444 33333332  222111123432 4


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhC---C--CcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKA---I--GCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~---~--~P~lI~  172 (176)
                      .+..||-.+..  .|++|..+-...|++-+   +  -|+++-
T Consensus       127 ~rd~g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~  166 (394)
T PRK08367        127 QRDTGWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVG  166 (394)
T ss_pred             ccccCeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            46677766655  48888777777776422   2  587763

>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]

Probab=91.06  E-value=2.4  Score=35.15  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCcccch-hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHH-hhhcCCCcEEEEEecCCCccccCcccccc
Q psy786           51 GTGSLGQ-GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHF-ASYYKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        51 ~~g~~G~-~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~-a~~~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      ..|..-+ -++.|.|+|++-+      ++.++  +=+.|.++..||=+.. .++.+|| +-+|..+.+++.......-+.
T Consensus        53 NvGIaEQ~mvg~AAGLA~~Gk------~Pfv~--tfa~F~s~Ra~EQir~~iay~~ln-VKiv~t~~G~t~g~dG~sHq~  123 (312)
T COG3958          53 NVGIAEQDMVGTAAGLALAGK------KPFVS--TFAAFLSRRAWEQIRNSIAYNNLN-VKIVATHAGVTYGEDGSSHQA  123 (312)
T ss_pred             ecchHHHHHHHHHHHHHhcCC------Cceee--chHHHHHHHHHHHHHHHhhhccCC-eEEEEecCCcccCCCCccchh
Confidence            3455533 3567888888654      24444  4578888778886654 4467888 566677777654322222223


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .+|++ +.+++ .+.++.-  .|.-+.++++..+. ..+||+.+-
T Consensus       124 ~EDia-imR~lpn~~V~~P--~D~v~~~~i~~~~~-~~~GP~Y~R  164 (312)
T COG3958         124 LEDIA-IMRGLPNMTVIAP--ADAVETRAILDQIA-DYKGPVYMR  164 (312)
T ss_pred             HHHHH-HHhcCCCceEEcc--CcHHHHHHHHHHHH-hcCCCEEEE
Confidence            45654 66766 4555532  36778888888876 467887654

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=90.53  E-value=4.5  Score=35.00  Aligned_cols=101  Identities=15%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .++.+++|++++=       .++.+.+-=.++.  ...|.|..|+-.++|++++++ +.+..-  .........|+.. +
T Consensus        67 ~A~~~~~GAs~aG-------aRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~-~R~~~~--~~~i~~d~~D~~~-~  133 (407)
T PRK09622         67 AAMSACVGAAAAG-------GRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLV-NRALAA--PLNVNGDHSDMYL-S  133 (407)
T ss_pred             HHHHHHHHHHhhC-------cCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEe-ccccCC--CcCCCchHHHHHH-H
Confidence            4577889999874       3677777666665  468999999999999544443 344321  1222222234433 3


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh---C--CCcEEEE
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK---A--IGCVWIQ  172 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~---~--~~P~lI~  172 (176)
                      +.-||-.+..  .|++|..+....|++-   .  +-|+++-
T Consensus       134 r~~g~ivl~p--~s~QEa~d~~~~Af~lAE~~~~~~Pviv~  172 (407)
T PRK09622        134 RDSGWISLCT--CNPQEAYDFTLMAFKIAEDQKVRLPVIVN  172 (407)
T ss_pred             hcCCeEEEeC--CCHHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence            5556665544  4899888888777652   2  6788764

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A

Probab=90.46  E-value=1.5  Score=31.78  Aligned_cols=73  Identities=23%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHH
Q psy786           76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLV  155 (176)
Q Consensus        76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~  155 (176)
                      .++.+.++.||.-.. ...+.+..+.+.++++.++-+.... ..         ...+..+++.-|..++.++ .+.+++.
T Consensus        99 ~~~~iv~iTDG~~~~-~~~~~~~~~~~~~i~i~~v~~~~~~-~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~  166 (172)
T PF13519_consen   99 RRRAIVLITDGEDNS-SDIEAAKALKQQGITIYTVGIGSDS-DA---------NEFLQRLAEATGGRYFHVD-NDPEDLD  166 (172)
T ss_dssp             EEEEEEEEES-TTHC-HHHHHHHHHHCTTEEEEEEEES-TT--E---------HHHHHHHHHHTEEEEEEE--SSSHHHH
T ss_pred             CceEEEEecCCCCCc-chhHHHHHHHHcCCeEEEEEECCCc-cH---------HHHHHHHHHhcCCEEEEec-CCHHHHH
Confidence            578999999998663 3456666666666663333222111 00         2457788888999999884 2668888


Q ss_pred             HHHHH
Q psy786          156 KVSSF  160 (176)
Q Consensus       156 ~al~~  160 (176)
                      +++++
T Consensus       167 ~~~~~  171 (172)
T PF13519_consen  167 DAFQQ  171 (172)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            88875

>PRK06154 hypothetical protein; Provisional

Probab=90.44  E-value=2.6  Score=37.87  Aligned_cols=101  Identities=11%  Similarity=-0.030  Sum_probs=56.5

Q ss_pred             HHHHHHHHhchhcCCCcceEE--EEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           60 SVAAGMAYVGKYFDKASYRTY--CLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        60 ~~AvG~A~a~~~~~~~~~~vv--~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      -+|-|.+....    .+++.+  +..|-|.++   ..-++..|...+.|+|++.-.......... .    ..+...+++
T Consensus        68 ~mAdgyar~t~----g~~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-~----~~d~~~~~~  135 (565)
T PRK06154         68 HMADGYARATS----GERVGVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTDVA-P----NFESLRNYR  135 (565)
T ss_pred             HHHHHHHHhcC----CCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccccCC-C----CcchhhhHh
Confidence            35666665431    012444  445888776   445789999999996555432221111110 0    123345666


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~~  174 (176)
                      .+--...+|+  +++++.+.+++|++    ..+||++|++-
T Consensus       136 ~vtk~~~~v~--~~~~~~~~i~~A~~~A~s~~~GPV~l~iP  174 (565)
T PRK06154        136 HITKWCEQVT--LPDEVPELMRRAFTRLRNGRPGPVVLELP  174 (565)
T ss_pred             hcceeEEECC--CHHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence            6644455664  67776666666654    23589999874

>PRK12754 transketolase; Reviewed

Probab=90.35  E-value=2.9  Score=38.52  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .++|.|+|+...     -++.++.+  ..|.. ...+.+..++..++| +++|....+++.......-++.+|++ +.++
T Consensus       415 v~iaaGlA~~~G-----~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~-V~~v~th~gi~~G~DG~THq~iEdla-~lR~  484 (663)
T PRK12754        415 TAIANGIALHGG-----FLPYTSTF--LMFVE-YARNAVRMAALMKQR-QVMVYTHDSIGLGEDGPTHQPVEQVA-SLRV  484 (663)
T ss_pred             HHHHhhHHhcCC-----CeEEEEee--HHHHH-HHHHHHHHHHHcCCC-eEEEEECCccccCCCCCCcccHHHHH-HHhc
Confidence            456778887322     12333333  35654 678889898999999 56666666666532222223345555 4555


Q ss_pred             c-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          139 F-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       139 ~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      . ++.+++=  .|..|+..+++.|++..++|+.|-.
T Consensus       485 iPn~~V~~P--aD~~E~~~~~~~a~~~~~gP~yirl  518 (663)
T PRK12754        485 TPNMSTWRP--CDQVESAVAWKYGVERQDGPTALIL  518 (663)
T ss_pred             CCCcEEecC--CCHHHHHHHHHHHHhCCCCCEEEEe
Confidence            5 7777753  3899999999999865578987643

>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional

Probab=90.22  E-value=5.3  Score=33.96  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHH-HHhhh--------cCCCcEEEEEecCCCccccCccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEAL-HFASY--------YKLDNLCVIFDINRLGQSEPTSL  125 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal-~~a~~--------~~lp~liiV~~nn~~~~~~~~~~  125 (176)
                      ...++.|.|+|+.-.      ++++++ ..|  |.+ ..++-+ +.++.        +++| ++++.....++..+.+..
T Consensus        92 q~~vg~AaGlA~~G~------~Pvv~~~fa~--Fl~-ra~dQi~~d~a~~~~~~~g~~~v~-vv~~~~~g~~g~~G~tHs  161 (355)
T PTZ00182         92 QGFAGFAIGAAMNGL------RPIAEFMFAD--FIF-PAFDQIVNEAAKYRYMSGGQFDCP-IVIRGPNGAVGHGGAYHS  161 (355)
T ss_pred             HHHHHHHHHHHhCCC------EEEEEechhh--HHH-HHHHHHHHHHHHhhcccCCCccCC-EEEEeCCCCCCCCCCccc
Confidence            344667788887532      455554 333  332 223322 23333        3555 333333333444443332


Q ss_pred             ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      +    .+..+.+++ |+.++.-  .|+.+++.+++.+++ .++|++|
T Consensus       162 ~----~~ea~lr~iPn~~V~~P--sd~~e~~~~l~~a~~-~~~P~~i  201 (355)
T PTZ00182        162 Q----SFEAYFAHVPGLKVVAP--SDPEDAKGLLKAAIR-DPNPVVF  201 (355)
T ss_pred             c----hHHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh-CCCcEEE
Confidence            2    223566766 8888755  389999999999984 5799876

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=89.83  E-value=3.9  Score=28.81  Aligned_cols=76  Identities=18%  Similarity=0.103  Sum_probs=42.3

Q ss_pred             HHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE--ecCCC-HHHHHHHHHHHHhhCCCcE
Q psy786           93 IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV--VDGHD-VEHLVKVSSFKLQKAIGCV  169 (176)
Q Consensus        93 ~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~--vdG~d-~~~l~~al~~a~~~~~~P~  169 (176)
                      ..+.+..+++.+..   .|+||..-+-..   .+....+..+.+++.|+.++.  |.+.+ ..+-.+++.++++...+|+
T Consensus        16 ~~~d~~~la~~Gfk---tVInlRpd~E~~---~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pv   89 (110)
T PF04273_consen   16 SPEDLAQLAAQGFK---TVINLRPDGEEP---GQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPV   89 (110)
T ss_dssp             -HHHHHHHHHCT-----EEEE-S-TTSTT---T-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSE
T ss_pred             CHHHHHHHHHCCCc---EEEECCCCCCCC---CCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence            34557777777654   556655433321   122234577889999999884  44333 3456667778887778999


Q ss_pred             EEEee
Q psy786          170 WIQRG  174 (176)
Q Consensus       170 lI~~~  174 (176)
                      +++=+
T Consensus        90 l~hC~   94 (110)
T PF04273_consen   90 LAHCR   94 (110)
T ss_dssp             EEE-S
T ss_pred             EEECC
Confidence            98743

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated

Probab=88.97  E-value=6.5  Score=33.01  Aligned_cols=36  Identities=8%  Similarity=0.073  Sum_probs=28.2

Q ss_pred             HHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          133 RKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       133 ~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      ..+++.+ |++++.-  .|+.+++..++.|+ +.++|++|
T Consensus       134 ea~~~~iPgl~V~~P--sd~~d~~~~l~~a~-~~~~Pv~i  170 (327)
T CHL00144        134 ESYFQSVPGLQIVAC--STPYNAKGLLKSAI-RSNNPVIF  170 (327)
T ss_pred             HHHHhcCCCCEEEEe--CCHHHHHHHHHHHH-hCCCcEEE
Confidence            4566665 8888755  38999999999997 46799887

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=88.55  E-value=5.3  Score=36.25  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh--hcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS--YYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~--~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ++..|+|++++-       .++++.+-=.++.  ...|.|..++  ...+|+++++.+..+-+   +  .+....|.. .
T Consensus        58 a~~~~~GAs~aG-------~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~---~--~~~~q~d~~-~  122 (595)
T TIGR03336        58 AVEVAAGAAWSG-------LRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMH---S--SQNEQDTRH-Y  122 (595)
T ss_pred             HHHHHHHHHhcC-------cceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCc---c--chhhHhHHH-H
Confidence            466788988864       3566666666664  3456666555  33677665555542222   1  111122322 4


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                      ++..+|.++.-  .|++|.++...+|++   +.+-|+++-.
T Consensus       123 ~~~~~~~vl~p--~~~qE~~d~~~~Af~lae~~~~PV~v~~  161 (595)
T TIGR03336       123 AKFAKIPCLEP--STPQEAKDMVKYAFELSEKFGLPVILRP  161 (595)
T ss_pred             HHhcCCeEECC--CCHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            55568886654  489998888888875   3467887643

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PLN02573 pyruvate decarboxylase

Probab=88.41  E-value=5.9  Score=35.80  Aligned_cols=104  Identities=13%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-c--cc---ccccHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP-T--SL---QHQTEVY  132 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~-~--~~---~~~~~~~  132 (176)
                      .-+|-|.+.+..     -..+++..|=|.++   ..-++..|...+.|+|++.-. ........ .  +.   .......
T Consensus        67 ~~mAdgyaR~tg-----~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~-~~~~~~~~~~~~~~~~~~~~~~~~  137 (578)
T PLN02573         67 GYAADGYARARG-----VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGG-PNSNDYGTNRILHHTIGLPDFSQE  137 (578)
T ss_pred             HHHHHHHHHHhC-----CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECC-CChhhhhcCceeeeecCCCChHHH
Confidence            335666666542     24566666888776   344688888999996555432 11111110 0  00   0001122


Q ss_pred             HHHHhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786          133 RKRLDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       133 ~~~a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~  174 (176)
                      .++++.+--...+|.  ++++    +.+|++.|+. .++|+.|++-
T Consensus       138 ~~~~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~-~~gPV~l~iP  180 (578)
T PLN02573        138 LRCFQTVTCYQAVIN--NLEDAHELIDTAISTALK-ESKPVYISVS  180 (578)
T ss_pred             HHHhhceEEEEEEeC--CHHHHHHHHHHHHHHHHh-cCCCEEEEee
Confidence            356666544455664  5554    5555555543 4689999873

>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme

Probab=87.24  E-value=8.7  Score=29.22  Aligned_cols=72  Identities=11%  Similarity=0.078  Sum_probs=47.7

Q ss_pred             cceEEEEECCCccCCc-hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHH
Q psy786           76 SYRTYCLVGDGESAEG-SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHL  154 (176)
Q Consensus        76 ~~~vv~~~GDG~~~~G-~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l  154 (176)
                      .++++++++||+-... ...+....++..++.+.++-+.+             ...-+.++++.-|..++.+.  |.+++
T Consensus       107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~-------------~~~~L~~ia~~tgG~~~~~~--~~~~l  171 (183)
T cd01453         107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSA-------------EMHICKEICKATNGTYKVIL--DETHL  171 (183)
T ss_pred             ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEech-------------HHHHHHHHHHHhCCeeEeeC--CHHHH
Confidence            4568888889876432 23344556666777643333321             01347889999999999985  78899


Q ss_pred             HHHHHHHH
Q psy786          155 VKVSSFKL  162 (176)
Q Consensus       155 ~~al~~a~  162 (176)
                      .+.+.++.
T Consensus       172 ~~~~~~~~  179 (183)
T cd01453         172 KELLLEHV  179 (183)
T ss_pred             HHHHHhcC
Confidence            98887753

Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.

>KOG4166|consensus

Probab=86.83  E-value=1.9  Score=37.74  Aligned_cols=100  Identities=17%  Similarity=0.049  Sum_probs=61.3

Q ss_pred             HHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-
Q psy786           61 VAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF-  139 (176)
Q Consensus        61 ~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~-  139 (176)
                      +|-|.|.+.+.    ...|++..|-|+.+-   ..-+.-|-.-+.|.++|-   .+..-+.-..+.+...|+..+-++. 
T Consensus       144 aAegYaR~sgK----PGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft---GQVptsaIGtDAFQEadiVgisRScT  213 (675)
T KOG4166|consen  144 AAEGYARSSGK----PGVVLVTSGPGATNV---VTPLADALADGVPLVVFT---GQVPTSAIGTDAFQEADIVGISRSCT  213 (675)
T ss_pred             hhhhhhhhcCC----CcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe---cccchhhcccchhccCCeeeeeeccc
Confidence            46677776642    468999999999972   234777777789954431   2211111111222234555556666 


Q ss_pred             CceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          140 GFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       140 G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      -|++..-   |+++|.+.+++|++-    ..||+|++.
T Consensus       214 KwNvmVk---dVedlPrrI~EAFeiATSGRPGPVLVDl  248 (675)
T KOG4166|consen  214 KWNVMVK---DVEDLPRRIEEAFEIATSGRPGPVLVDL  248 (675)
T ss_pred             eeheeee---cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence            4665542   789999999998763    258999985

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=85.64  E-value=8.9  Score=35.15  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=51.2

Q ss_pred             hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEE
Q psy786           92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW  170 (176)
Q Consensus        92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l  170 (176)
                      ...-++.+++-.++| +++|+.-.+++.......-.+.+.++ ..|+. ++.+++=  -|..|...+.+.|+++.++|+.
T Consensus       440 Y~r~AiRlaALm~l~-~~~V~THDSIgvGEDGPTHqPiEqLa-~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~~~gPt~  515 (663)
T COG0021         440 YARPAVRLAALMGLP-VIYVFTHDSIGVGEDGPTHQPVEQLA-SLRAIPNLSVIRP--ADANETAAAWKYALERKDGPTA  515 (663)
T ss_pred             hhhHHHHHHHhcCCC-eEEEEecCceecCCCCCCCCcHHHHH-HhhccCCceeEec--CChHHHHHHHHHHHhcCCCCeE
Confidence            345578899999999 66677666665532222222333333 34444 7777753  2678999999999987789987


Q ss_pred             EEe
Q psy786          171 IQR  173 (176)
Q Consensus       171 I~~  173 (176)
                      |-.
T Consensus       516 Lil  518 (663)
T COG0021         516 LIL  518 (663)
T ss_pred             EEE
Confidence            643

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=85.40  E-value=9.6  Score=34.38  Aligned_cols=102  Identities=16%  Similarity=0.004  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhchhcCCCcceEEE--EECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYC--LVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~--~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .-+|-|.+....      ++.+|  ..|-|.++   ..-++..|...+.|+|++--+ -.......  ..+...|...++
T Consensus        54 ~~mAdgyar~tg------k~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~-~~~~~~~~--~~~Qe~d~~~l~  121 (578)
T PRK06546         54 AFAAAAEAQLTG------KLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASH-IPSAQIGS--GFFQETHPDRLF  121 (578)
T ss_pred             HHHHHhHHHhhC------CceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCC-CCccccCC--CCccccChhhhc
Confidence            345667776543      34444  45777776   334688999999995554321 11111110  111112334566


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      +.+=-..++|+  +++++.+.+++|++   ...||+.|++-
T Consensus       122 ~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP  160 (578)
T PRK06546        122 VECSGYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLP  160 (578)
T ss_pred             ccceeeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence            65533344664  66666665655553   23589999863

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=84.33  E-value=4.2  Score=41.38  Aligned_cols=105  Identities=16%  Similarity=0.007  Sum_probs=58.6

Q ss_pred             HHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhc
Q psy786           60 SVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAF  139 (176)
Q Consensus        60 ~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~  139 (176)
                      -+|.|.|.+...    -..++|..|-|..+   ..-++..|..-+.|+|++.-+ ..........  ....|-..+++.+
T Consensus       353 fmAdGyAR~Tgk----pgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd-~p~~~~~~ga--~Q~iDq~~lf~pv  422 (1655)
T PLN02980        353 FHALGYARGSLK----PAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTAD-RPPELQDAGA--NQAINQVNHFGSF  422 (1655)
T ss_pred             HHHHHHHHHhCC----CEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCC-CCHHHhcCCC--CcccchhhHHHhh
Confidence            367788876531    23455556777776   455789999999996555433 2222111111  1123445566666


Q ss_pred             CceEEEec-CCC-------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          140 GFNAVVVD-GHD-------VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       140 G~~~~~vd-G~d-------~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      --..++|. -.+       ++.+.+|++.|....+||+.|++-
T Consensus       423 tK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP  465 (1655)
T PLN02980        423 VRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP  465 (1655)
T ss_pred             hheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence            54455552 223       144566666664333589999863

>PRK13685 hypothetical protein; Provisional

Probab=83.24  E-value=25  Score=29.24  Aligned_cols=83  Identities=14%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             ceEEEEECCCccCCch-------HHHHHHHhhhcCCCcEEEEEecCCCccccCccc---ccccHHHHHHHhhcCceEEEe
Q psy786           77 YRTYCLVGDGESAEGS-------IWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---QHQTEVYRKRLDAFGFNAVVV  146 (176)
Q Consensus        77 ~~vv~~~GDG~~~~G~-------~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---~~~~~~~~~~a~a~G~~~~~v  146 (176)
                      ..+|+++-||.-..|.       ..++...+...++++-++-+-+..-++....+.   ........++|+.-|..++.+
T Consensus       194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~  273 (326)
T PRK13685        194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA  273 (326)
T ss_pred             CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence            4578899999876442       235566777888885444443211111111111   122346788999999999998


Q ss_pred             cCCCHHHHHHHHHHH
Q psy786          147 DGHDVEHLVKVSSFK  161 (176)
Q Consensus       147 dG~d~~~l~~al~~a  161 (176)
                      +  |.+++.+++++.
T Consensus       274 ~--~~~~L~~if~~I  286 (326)
T PRK13685        274 A--SLEELRAVYATL  286 (326)
T ss_pred             C--CHHHHHHHHHHH
Confidence            5  777887777665

>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=82.20  E-value=22  Score=27.69  Aligned_cols=98  Identities=15%  Similarity=-0.012  Sum_probs=60.9

Q ss_pred             CcccchhHHHHHHHHHhchh-cCCCcceEEEEECCCccC-CchHHH--HHHHhhhcCCCcEEEEEecCCCccccCccccc
Q psy786           52 TGSLGQGLSVAAGMAYVGKY-FDKASYRTYCLVGDGESA-EGSIWE--ALHFASYYKLDNLCVIFDINRLGQSEPTSLQH  127 (176)
Q Consensus        52 ~g~~G~~l~~AvG~A~a~~~-~~~~~~~vv~~~GDG~~~-~G~~~e--al~~a~~~~lp~liiV~~nn~~~~~~~~~~~~  127 (176)
                      .|..|.+..-|+|.|+-.=. ....+.+|+.++-||... .+....  +-.+|+..++++ +.|.--.      .     
T Consensus        86 ~g~ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~i-ytIgiG~------~-----  153 (191)
T cd01455          86 FCWSGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNA-FVIFIGS------L-----  153 (191)
T ss_pred             cCccCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEE-EEEEecC------C-----
Confidence            34445666677777763311 122346788899999964 332333  246677888874 3332211      0     


Q ss_pred             ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786          128 QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ  163 (176)
Q Consensus       128 ~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~  163 (176)
                      .......+++.-|.+++++.  |.++|.+.+++.+.
T Consensus       154 d~~~l~~iA~~tgG~~F~A~--d~~~L~~iy~~I~~  187 (191)
T cd01455         154 SDEADQLQRELPAGKAFVCM--DTSELPHIMQQIFT  187 (191)
T ss_pred             CHHHHHHHHhCCCCcEEEeC--CHHHHHHHHHHHHH
Confidence            12345677888899999995  77899988887763

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
3ooy_A	616	Crystal Structure Of Human Transketolase (Tkt) Leng		5e-56
3mos_A	616	The Structure Of Human Transketolase Length = 616		6e-56
3m7i_A	635	Crystal Structure Of Transketolase In Complex With		1e-17
3l84_A	632	High Resolution Crystal Structure Of Transketolase		1e-17
1trk_A	680	Refined Structure Of Transketolase From Saccharomyc		4e-13
1ay0_A	680	Identification Of Catalytically Important Residues		4e-13
1tka_A	678	Specificity Of Coenzyme Binding In Thiamin Diphosph		4e-13
2e6k_A	651	X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505 L		6e-13
3uk1_A	711	Crystal Structure Of A Transketolase From Burkholde		2e-12
3upt_A	711	Crystal Structure Of A Transketolase From Burkholde		6e-12
1r9j_A	673	Transketolase From Leishmania Mexicana Length = 673		4e-11
3hyl_A	690	Crystal Structure Of Transketolase From Bacillus An		1e-10
1qgd_A	662	Transketolase From Escherichia Coli Length = 662		5e-10
2r5n_A	669	Crystal Structure Of Transketolase From Escherichia		1e-09
3rim_A	700	Crystal Structure Of Mycobacterium Tuberculosis Tra		2e-09
1itz_A	675	Maize Transketolase In Complex With Tpp Length = 67		2e-08
3kom_A	663	Crystal Structure Of Apo Transketolase From Francis		2e-07
3dva_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		1e-04
3duf_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		2e-04
1w85_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1		2e-04
1w88_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1(		4e-04

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Iteration: 1
 Score =  213 bits (542), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 112/141 (79%)
Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG    +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 82  WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 141
Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 142 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 201
Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 202 CEAFGWHAIIVDGHSVEELCK 222

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Iteration: 1
 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 112/141 (79%)
Query: 16  WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
           WAEAG    +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDKA
Sbjct: 84  WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 143
Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
           SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+KR
Sbjct: 144 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 203
Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
            +AFG++A++VDGH VE L K
Sbjct: 204 CEAFGWHAIIVDGHSVEELCK 224

>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) And Magnesium Ion Length = 635

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 24  VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASY 77
           + +LKN R++ S   GHP      +++ TG LGQG++ A G A   K        D   +
Sbjct: 88  LEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDH 147
Query: 78  RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137
           + YCL GDG+  EG  +EA   A  +KLDN  +I+D N +       L     V + R +
Sbjct: 148 KIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENV-KXRFE 206
Query: 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173
           A GF  + ++GHD E + K      +    C+ I +
Sbjct: 207 AQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAK 242

>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 632

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 24  VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASY 77
           + +LKN R++ S   GHP      +++ TG LGQG++ A G A   K        D   +
Sbjct: 85  LEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDH 144
Query: 78  RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137
           + YCL GDG+  EG  +EA   A  +KLDN  +I+D N +       L     V + R +
Sbjct: 145 KIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENV-KXRFE 203
Query: 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173
           A GF  + ++GHD E + K      +    C+ I +
Sbjct: 204 AQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAK 239

>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces Cerevisiae At 2.0 Angstroms Resolution Length = 680

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24  VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
           + +LK  R++ S   GHP   L  ++V TG LGQG+S A GMA         Y    F  
Sbjct: 87  IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 146
Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           +   TY  +GDG   EG   EA   A + KL NL  I+D N++     TS+    +V  K
Sbjct: 147 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 205
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
           R +A+G+  + V+    D+  + K ++  KL K
Sbjct: 206 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238

>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In Yeast Transketolase Length = 680

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24  VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
           + +LK  R++ S   GHP   L  ++V TG LGQG+S A GMA         Y    F  
Sbjct: 87  IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 146
Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           +   TY  +GDG   EG   EA   A + KL NL  I+D N++     TS+    +V  K
Sbjct: 147 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 205
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
           R +A+G+  + V+    D+  + K ++  KL K
Sbjct: 206 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238

>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate Dependent Enzymes: Crystal Structures Of Yeast Transketolase In Complex With Analogs Of Thiamin Diphosphate Length = 678

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24  VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
           + +LK  R++ S   GHP   L  ++V TG LGQG+S A GMA         Y    F  
Sbjct: 85  IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 144
Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           +   TY  +GDG   EG   EA   A + KL NL  I+D N++     TS+    +V  K
Sbjct: 145 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 203
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
           R +A+G+  + V+    D+  + K ++  KL K
Sbjct: 204 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 236

>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505 Length = 651

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 22  FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
            P+ ELK+ R+  S   GHP    TP    ++V TG LGQG+S A G+A     +   F+
Sbjct: 86  LPLEELKSFRQWGSKTPGHPERGHTPG---VEVTTGPLGQGISTAVGLALAERKLAAEFN 142
Query: 74  K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ 128
           +       + TY L  DG+  EG   EA   A ++ L  L V +D NR+    PT L   
Sbjct: 143 RPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF- 201
Query: 129 TEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQK 164
           TE    R  A+G+  + V D +D+E L K  + KL K
Sbjct: 202 TEDVLARYRAYGWQTLRVEDVNDLEALRK--AIKLAK 236

>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia Thailandensis With An Oxidized Cysteinesulfonic Acid In The Active Site Length = 711

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 22  FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
            P+ ELKN R++ S   GHP    TP    ++  TG LGQGL+ A GMA     +   F+
Sbjct: 123 LPIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFN 179
Query: 74  K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG-QSEPTSLQH 127
           +       + TY  +GDG   EG   EA   A   KL+ L  ++D N +    +  +  H
Sbjct: 180 RDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFH 239
Query: 128 QTEVYRKRLDAFGFNAVV-VDGHDV 151
                 KR +A+G+N +  V+GHDV
Sbjct: 240 DDT--PKRFEAYGWNVIPNVNGHDV 262

>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia Pseudomallei Bound To Tpp, Calcium And Ribose-5-Phosphate Length = 711

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 22  FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
            P+ ELKN R++ S   GHP    TP    ++  TG LGQGL+ A GMA     +   F+
Sbjct: 123 LPIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFN 179
Query: 74  K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG-QSEPTSLQH 127
           +       + TY  +GDG   EG   EA   A   KL+ L  ++D N +    +  +  H
Sbjct: 180 RDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFH 239
Query: 128 QTEVYRKRLDAFGFNAVV-VDGHDV 151
                 KR +A+G+N +  V+GHDV
Sbjct: 240 DDT--PKRFEAYGWNVIPNVNGHDV 262

>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana Length = 673

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 24  VSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDKA 75
           + +LK  R+  S   GHP    TP    ++V TG LGQG++ A G+A    ++   F++ 
Sbjct: 86  MDDLKGFRQDGSRTPGHPERFVTPG---VEVTTGPLGQGIANAVGLAIAEAHLAATFNRP 142
Query: 76  SYR-----TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
            Y      TY   GDG   EG   EAL  A +  L+ L VI+D N +     TSL    +
Sbjct: 143 GYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQ 202
Query: 131 VYRKRLDAFGFNAVVVDGHDVEH 153
            ++K + A GF+ + V   D ++
Sbjct: 203 CHQKYV-AMGFHVIEVKNGDTDY 224

>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 26  ELKNLRKIDSDLEGHPT-PRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDKASYR-- 78
           +LKN R+  S   GHP       +D  TG LGQG++ A G A   ++    +++ +Y   
Sbjct: 112 DLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGXAXAERHLAAKYNRDAYNIV 171
Query: 79  ---TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRK 134
              TY + GDG+  EG   EA   A++ +L  L V++D N +  S    L    +E    
Sbjct: 172 DHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDI--SLDGDLNRSFSESVED 229
Query: 135 RLDAFGFNAV-VVDGHDVEHLVKV 157
           R  A+G+  + V DG+D+E + K 
Sbjct: 230 RYKAYGWQVIRVEDGNDIEAIAKA 253

>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli Length = 662

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 22  FPVSELKNLRKIDSDLEGHP-TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF-------- 72
            P+ ELKN R++ S   GHP   +   ++  TG LGQG++ A GMA   K          
Sbjct: 81  LPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPG 140
Query: 73  -DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
            D   + TY  +GDG   EG   E    A   KL  L   +D N +      S+    E 
Sbjct: 141 HDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI------SIDGHVEG 194
Query: 132 Y-----RKRLDAFGFNAVV-VDGHDVEHLVKV 157
           +       R +A+G++ +  +DGHD   + + 
Sbjct: 195 WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRA 226

>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli In Noncovalent Complex With Acceptor Aldose Ribose 5-Phosphate Length = 669

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 22  FPVSELKNLRKIDSDLEGHPTPRLNF-IDVGTGSLGQGLSVAAGMAYVGKYF-------- 72
            P+ ELKN R++ S   GHP       ++  TG LGQG++ A GMA   K          
Sbjct: 82  LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPG 141
Query: 73  -DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
            D   + TY  +GDG   EG   E    A   KL  L   +D N +      S+    E 
Sbjct: 142 HDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI------SIDGHVEG 195
Query: 132 Y-----RKRLDAFGFNAVV-VDGHDVEHLVKV 157
           +       R +A+G++ +  +DGHD   + + 
Sbjct: 196 WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRA 227

>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Transketolase (rv1449c) Length = 700

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 24  VSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKY----FDKAS-- 76
           +S++++LR   S   GHP  R    +++ TG LGQGL+ A GMA   +Y    FD  +  
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEP 162
Query: 77  ------YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
                 +  Y +  DG+  EG   EA   A+  +L NL V +D N++   + T++    E
Sbjct: 163 GASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIA-LCE 221
Query: 131 VYRKRLDAFGFNAVVVDG 148
               R  A+G++   V+G
Sbjct: 222 DTAARYRAYGWHVQEVEG 239

>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp Length = 675

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 26  ELKNLRKIDSDLEGHPTPRLNF----IDVGTGSLGQGLSVAAGMAYVGKY----FDKAS- 76
           +LK  R+  S   GHP    NF    ++V TG LGQG++ A G+A   K+    F+K   
Sbjct: 99  DLKQFRQWGSRTPGHPE---NFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155
Query: 77  ----YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY 132
               + TY ++GDG   EG   EA   A ++ L  L   +D N +     T +   TE  
Sbjct: 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDV 214
Query: 133 RKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAI 166
             R +A G++ + V   +  +    ++ K  KA+
Sbjct: 215 STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV 248

>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella Tularensis Length = 663

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 24  VSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK----- 74
           + ++KN R++ S   GHP    TP    ++  TG LGQG++ A G A   K         
Sbjct: 86  IEDIKNFRQLHSKTPGHPEYGYTPG---VETTTGPLGQGVANAVGXALGEKLLSDRYNTP 142
Query: 75  ----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
                 + TY  +GDG   EG   EA   A    L+ L   +D N +     T     ++
Sbjct: 143 DLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SD 201
Query: 131 VYRKRLDAFGFNAVV-VDGHD 150
              +R  A+G++ +  VDGHD
Sbjct: 202 NTPERFRAYGWHVIENVDGHD 222

>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57  QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
           Q   VA G+   GK   KA   TY   GDG +++G  +E ++FA  +K   + V+ + NR
Sbjct: 151 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 204
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
              S P   Q   +   ++  A G   + VDG D
Sbjct: 205 FAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 238

>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57  QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
           Q   VA G+   GK   KA   TY   GDG +++G  +E ++FA  +K   + V+ + NR
Sbjct: 151 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 204
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
              S P   Q   +   ++  A G   + VDG D
Sbjct: 205 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 238

>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57  QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
           Q   VA G+   GK   KA   TY   GDG +++G  +E ++FA  +K   + V+ + NR
Sbjct: 150 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 203
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
              S P   Q   +   ++  A G   + VDG D
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 237

>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 57  QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
           Q   VA G+   GK   KA   TY   GDG +++G+ ++ ++FA  +K   + V+ + NR
Sbjct: 150 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGNFYQGINFAGAFKAPAIFVVQN-NR 203
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
              S P   Q   +   ++  A G   + VDG D
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	1e-79
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	5e-28
3l84_A	632	Transketolase; TKT, structural genomics, center fo	1e-21
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	2e-20
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	5e-20
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	6e-20
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	6e-20
3uk1_A	711	Transketolase; structural genomics, seattle struct	1e-19
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	2e-19
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	6e-19
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	8e-19
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	1e-17
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	1e-12
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	2e-12
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	4e-12
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	8e-12
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	4e-11
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	6e-06

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score =  246 bits (631), Expect = 1e-79
 Identities = 96/142 (67%), Positives = 112/142 (78%)

Query: 15  AWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK 74
            WAEAG    +EL NLRKI SDL+GHP P+  F DV TGSLGQGL  A GMAY GKYFDK
Sbjct: 83  VWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDK 142

Query: 75  ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
           ASYR YCL+GDGE +EGS+WEA+ FAS YKLDNL  I DINRLGQS+P  LQHQ ++Y+K
Sbjct: 143 ASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQK 202

Query: 135 RLDAFGFNAVVVDGHDVEHLVK 156
           R +AFG++A++VDGH VE L K
Sbjct: 203 RCEAFGWHAIIVDGHSVEELCK 224

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Length = 845

 Score =  108 bits (270), Expect = 5e-28
 Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 16/152 (10%)

Query: 26  ELKNLRKIDSDLEGHPT---PRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCL 82
            L+   +  S   G P+   P         G LG  LS A G        +  S    C+
Sbjct: 145 GLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAV-----MNNPSLFVPCI 199

Query: 83  VGDGESAEGSI---WEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT-EVYRKRLDA 138
           +GDGE+  G +   W++    +      +  I  +N    + PT L   + E        
Sbjct: 200 IGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRG 259

Query: 139 FGFNAVVV----DGHDVEHLVKVSSFKLQKAI 166
            G++        D  D   + +  +   +   
Sbjct: 260 MGYHPYEFVAGFDNEDHMSIHRRFAELFETIF 291

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632

 Score = 90.2 bits (225), Expect = 1e-21
 Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 23  PVSELKNLRKIDSDLEGHP---TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY------FD 73
            + +LKN R++ S   GHP   T     +++ TG LGQG++ A G A   K        D
Sbjct: 84  SLEDLKNFRQLHSKTPGHPEISTLG---VEIATGPLGQGVANAVGFAMAAKKAQNLLGSD 140

Query: 74  KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR 133
              ++ YCL GDG+  EG  +EA   A  +KLDN  +I+D N +       L    E  +
Sbjct: 141 LIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVK 199

Query: 134 KRLDAFGFNAVVVDGHDVE 152
            R +A GF  + ++GHD E
Sbjct: 200 MRFEAQGFEVLSINGHDYE 218

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690

 Score = 86.4 bits (215), Expect = 2e-20
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDK 74
            + +LKN R+  S   GHP    T     +D  TG LGQG++ A GMA   ++    +++
Sbjct: 109 TMDDLKNFRQWGSKTPGHPEYGHTA---GVDATTGPLGQGIATAVGMAMAERHLAAKYNR 165

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
            +Y      TY + GDG+  EG   EA   A++ +L  L V++D N +      +    +
Sbjct: 166 DAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-S 224

Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
           E    R  A+G+  + V DG+D+E
Sbjct: 225 ESVEDRYKAYGWQVIRVEDGNDIE 248

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669

 Score = 85.2 bits (212), Expect = 5e-20
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
           P+ ELKN R++ S   GHP    T     ++  TG LGQG++ A GMA     +   F++
Sbjct: 83  PMEELKNFRQLHSKTPGHPEVGYTAG---VETTTGPLGQGIANAVGMAIAEKTLAAQFNR 139

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
             +      TY  +GDG   EG   E    A   KL  L   +D N +           T
Sbjct: 140 PGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-T 198

Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
           +    R +A+G++ +  +DGHD  
Sbjct: 199 DDTAMRFEAYGWHVIRDIDGHDAA 222

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Length = 651

 Score = 85.2 bits (212), Expect = 6e-20
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 18/144 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
           P+ ELK+ R+  S   GHP    TP    ++V TG LGQG+S A G+A     +   F++
Sbjct: 87  PLEELKSFRQWGSKTPGHPERGHTPG---VEVTTGPLGQGISTAVGLALAERKLAAEFNR 143

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
             +      TY L  DG+  EG   EA   A ++ L  L V +D NR+    PT L   T
Sbjct: 144 PGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-T 202

Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
           E    R  A+G+  + V D +D+E
Sbjct: 203 EDVLARYRAYGWQTLRVEDVNDLE 226

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Length = 700

 Score = 85.3 bits (212), Expect = 6e-20
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 31/152 (20%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDK 74
            +S++++LR   S   GHP    TP    +++ TG LGQGL+ A GMA   +Y    FD 
Sbjct: 102 ELSDIESLRTWGSKTPGHPEFRHTP---GVEITTGPLGQGLASAVGMAMASRYERGLFDP 158

Query: 75  AS--------YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ 126
            +        +  Y +  DG+  EG   EA   A+  +L NL V +D N++      S++
Sbjct: 159 DAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI------SIE 212

Query: 127 HQTEVY-----RKRLDAFGFNAV-VVDGHDVE 152
             T +        R  A+G++   V  G +V 
Sbjct: 213 DDTNIALCEDTAARYRAYGWHVQEVEGGENVV 244

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Length = 711

 Score = 84.1 bits (209), Expect = 1e-19
 Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 24/147 (16%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
           P+ ELKN R++ S   GHP    TP    ++  TG LGQGL+ A GMA     +   F++
Sbjct: 124 PIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFNR 180

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL---GQSEPTSLQ 126
                    TY  +GDG   EG   EA   A   KL+ L  ++D N +   G        
Sbjct: 181 DDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-- 238

Query: 127 HQTEVYRKRLDAFGFNAV-VVDGHDVE 152
              +   KR +A+G+N +  V+GHDV+
Sbjct: 239 --HDDTPKRFEAYGWNVIPNVNGHDVD 263

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Length = 663

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
            + ++KN R++ S   GHP    TP    ++  TG LGQG++ A GMA     +   ++ 
Sbjct: 85  SIEDIKNFRQLHSKTPGHPEYGYTPG---VETTTGPLGQGVANAVGMALGEKLLSDRYNT 141

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
                    TY  +GDG   EG   EA   A    L+ L   +D N +     T     +
Sbjct: 142 PDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-S 200

Query: 130 EVYRKRLDAFGFNAV-VVDGHDVE 152
           +   +R  A+G++ +  VDGHD  
Sbjct: 201 DNTPERFRAYGWHVIENVDGHDFV 224

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 675

 Score = 82.1 bits (204), Expect = 6e-19
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
              +LK  R+  S   GHP    TP    ++V TG LGQG++ A G+A    ++   F+K
Sbjct: 96  KEEDLKQFRQWGSRTPGHPENFETPG---VEVTTGPLGQGIANAVGLALAEKHLAARFNK 152

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
                    TY ++GDG   EG   EA   A ++ L  L   +D N +     T +   T
Sbjct: 153 PDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-T 211

Query: 130 EVYRKRLDAFGFNAV-VVDGHD 150
           E    R +A G++ + V +G+ 
Sbjct: 212 EDVSTRFEALGWHTIWVKNGNT 233

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680

 Score = 81.8 bits (203), Expect = 8e-19
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 28/149 (18%)

Query: 23  PVSELKNLRKIDSDLEGHP---TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDKA 75
            + +LK  R++ S   GHP    P    ++V TG LGQG+S A GMA     +   ++K 
Sbjct: 86  SIEDLKQFRQLGSRTPGHPEFELPG---VEVTTGPLGQGISNAVGMAMAQANLAATYNKP 142

Query: 76  SY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
            +      TY  +GDG   EG   EA   A + KL NL  I+D N++      ++   T 
Sbjct: 143 GFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI------TIDGATS 196

Query: 131 VY-----RKRLDAFGFNAV-VVDGH-DVE 152
           +       KR +A+G+  + V +G+ D+ 
Sbjct: 197 ISFDEDVAKRYEAYGWEVLYVENGNEDLA 225

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 673

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 23  PVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDK 74
            + +LK  R+  S   GHP    TP    ++V TG LGQG++ A G+A    ++   F++
Sbjct: 85  TMDDLKGFRQDGSRTPGHPERFVTPG---VEVTTGPLGQGIANAVGLAIAEAHLAATFNR 141

Query: 75  ASY-----RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT 129
             Y      TY   GDG   EG   EAL  A +  L+ L VI+D N +     TSL   T
Sbjct: 142 PGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-T 200

Query: 130 EVYRKRLDAFGFNAVVVDGHD 150
           E   ++  A GF+ + V   D
Sbjct: 201 EQCHQKYVAMGFHVIEVKNGD 221

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 52  TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVI 111
              +G     AAG+A   K             GDG +++G  +E ++FA  +K      I
Sbjct: 141 QIIIGAQYIQAAGVALGLKM-RGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAP---AI 196

Query: 112 FDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
           F +  NR   S P   Q   +   ++  A G   + VDG D 
Sbjct: 197 FVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDP 238

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
               +   +  AAG A   K   +      C  GDG ++EG  +  ++FA+         
Sbjct: 142 VASPIASHVPPAAGAAISMKL-LRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP---A 197

Query: 111 IFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
           +F    N    S     Q  +     +  AFG    +VDG DV
Sbjct: 198 VFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDV 240

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)

Query: 39  GHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH 98
            +     +F+   +  L   +  A G AY  K    A+    C  G+G ++EG      +
Sbjct: 149 HYGCKERHFV-TISSPLATQIPQAVGAAYAAKR-ANANRVVICYFGEGAASEGDAHAGFN 206

Query: 99  FASYYKLDNLCVIFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDV 151
           FA+  +     +IF    N    S PTS Q++ +    R   +G  ++ VDG+DV
Sbjct: 207 FAATLECP---IIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDV 258

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 38  EGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL 97
             +      F  + +G+L      A G A         +      +GDG +AE     AL
Sbjct: 167 IMYSVREAGFFTI-SGNLATQFVQAVGWAMASAI-KGDTKIASAWIGDGATAESDFHTAL 224

Query: 98  HFASYYKLDNLCVIFDI--NRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVVDGHDV 151
            FA  Y+     VI ++  N+   S   ++   ++  +  R    G  ++ VDG+D 
Sbjct: 225 TFAHVYRAP---VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDF 278

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 51  GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
           G G +G  + + AG+A   KY  K       L GDG + +G I+EA + A+ +KL     
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP---C 193

Query: 111 IFDI--NRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVE 152
           IF    NR G          +  Y KR        + VDG D+ 
Sbjct: 194 IFICENNRYGMGTSVERAAASTDYYKR--GDFIPGLRVDGMDIL 235

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Length = 886

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 11/113 (9%)

Query: 13  SKAWAEAGLFPVSELKNLRK-IDSD-LEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYV 68
           ++A+ E G     +L N R+ +  + L  +P P+L   F    T S+G G   A   A  
Sbjct: 149 ARAFLE-GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKF 207

Query: 69  GKY------FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
            KY       D +    Y  +GDGE  E     A+  A+  KLDNL  + + N
Sbjct: 208 LKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCN 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	100.0
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	100.0
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	100.0
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	100.0
3l84_A	632	Transketolase; TKT, structural genomics, center fo	100.0
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	100.0
3uk1_A	711	Transketolase; structural genomics, seattle struct	100.0
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	100.0
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	100.0
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	100.0
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	100.0
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	99.97
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.97
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	99.97
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.96
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	99.96
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.96
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	99.95
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	99.94
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.92
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	99.88
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	99.87
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.87
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	99.86
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	99.86
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	99.86
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	99.86
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	99.85
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	99.85
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	99.85
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	99.85
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	99.85
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.85
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.85
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	99.85
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	99.84
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	99.84
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	99.84
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	99.84
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.84
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.82
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.81
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	99.81
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.8
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.78
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.54
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	96.13
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	95.42
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	95.37
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	95.35
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	95.22
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	94.98
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	94.82
1qs0_B	338	2-oxoisovalerate dehydrogenase beta-subunit; heter	94.81
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	94.69
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	94.56
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	94.48
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	94.48
3l84_A	632	Transketolase; TKT, structural genomics, center fo	94.29
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	94.27
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	94.23
1w85_B	324	Pyruvate dehydrogenase E1 component, beta subunit;	93.98
1ik6_A	369	Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o	93.94
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	93.61
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	93.49
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	93.44
2bfd_B	342	2-oxoisovalerate dehydrogenase beta subunit; oxido	93.29
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	93.22
1umd_B	324	E1-beta, 2-OXO acid dehydrogenase beta subunit; al	93.17
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	93.14
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	93.09
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	93.03
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	92.88
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	92.88
3uk1_A	711	Transketolase; structural genomics, seattle struct	92.86
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	92.78
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	92.52
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	92.32
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	91.72
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	91.71
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	91.28
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	90.34
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	90.25
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	89.85
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	88.9
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	88.77
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	88.76
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	88.57
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	88.41
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	86.8
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	86.66
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	82.94
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	80.68

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=100.00  E-value=1.8e-36  Score=269.28  Aligned_cols=163  Identities=60%  Similarity=0.977  Sum_probs=152.0

Q ss_pred             hHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786           10 TNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA   89 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~   89 (176)
                      +.||++|...|++++|+|.+||++++.++|||++..|+++.++|+||+++|+|+|+|+|.|+++.++++|||++|||+++
T Consensus        78 ~~ly~~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~  157 (616)
T 3mos_A           78 PILYAVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELS  157 (616)
T ss_dssp             HHHHHHHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGG
T ss_pred             HHHHHHHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence            46899999999999999999999999999999998899999999999999999999999987666678999999999999


Q ss_pred             CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE
Q psy786           90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV  169 (176)
Q Consensus        90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~  169 (176)
                      +|++||++++|++++||++++|+|||+|++++++......+++.+++++|||++++|||+|++++.++++++   .++|+
T Consensus       158 eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~---~~~P~  234 (616)
T 3mos_A          158 EGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA---KHQPT  234 (616)
T ss_dssp             SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC---CSSCE
T ss_pred             cCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc---CCCCE
Confidence            999999999999999999999999999999988777666789999999999999999999999999999765   47999


Q ss_pred             EEEeee
Q psy786          170 WIQRGC  175 (176)
Q Consensus       170 lI~~~~  175 (176)
                      ||++++
T Consensus       235 lI~v~T  240 (616)
T 3mos_A          235 AIIAKT  240 (616)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            999875

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.1e-35  Score=266.57  Aligned_cols=165  Identities=27%  Similarity=0.366  Sum_probs=151.8

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhc------------CCC
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYF------------DKA   75 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~------------~~~   75 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||++. +|++++++|++|+++|.|+|+|+|.|++            +..
T Consensus        88 ~~lYa~l~l~G~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~  167 (700)
T 3rim_A           88 LTLYIQLYLGGFGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPF  167 (700)
T ss_dssp             HHHHHHHHHTTSSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTT
T ss_pred             HHHHHHHHHhCCCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCC
Confidence            468999999999 99999999999999999999974 8999999999999999999999999864            245


Q ss_pred             cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHH
Q psy786           76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHL  154 (176)
Q Consensus        76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l  154 (176)
                      +++|+|++|||++++|++||++++|+.++||++++|+|||+|++++++.... ..++.+++++|||++++| ||+|++++
T Consensus       168 ~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al  246 (700)
T 3rim_A          168 DHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGI  246 (700)
T ss_dssp             CCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHH
T ss_pred             CCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHH
Confidence            7899999999999999999999999999999999999999999998877554 578999999999999999 99999999


Q ss_pred             HHHHHHHHhhCCCcEEEEeee
Q psy786          155 VKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       155 ~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .+|+++|.+..++|+||++++
T Consensus       247 ~~Al~~A~~~~~~P~lI~~~T  267 (700)
T 3rim_A          247 EEAIANAQAVTDRPSFIALRT  267 (700)
T ss_dssp             HHHHHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHHHHHcCCCCEEEEEEE
Confidence            999999975468999999875

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=100.00  E-value=1.9e-35  Score=264.21  Aligned_cols=165  Identities=27%  Similarity=0.364  Sum_probs=145.9

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC----C-----cce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK----A-----SYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~----~-----~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||++. +|+++.++|+||+++|.|+|+|+|.|+++.    +     +++
T Consensus        71 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~  150 (663)
T 3kom_A           71 MLLYSLLHLTGYDLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHH  150 (663)
T ss_dssp             HHHHHHHHHHTCSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCC
T ss_pred             HHHHHHHHHhCCCCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCe
Confidence            569999999999 99999999999999999999975 789999999999999999999999985431    1     689


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a  157 (176)
                      |+|++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||+++ +|||+|++++.+|
T Consensus       151 v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a  229 (663)
T 3kom_A          151 TYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKA  229 (663)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred             EEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998877654 4789999999999999 8999999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|.+..++|+||++++
T Consensus       230 l~~A~~~~~~P~lI~~~T  247 (663)
T 3kom_A          230 INEAHSQQQKPTLICCKT  247 (663)
T ss_dssp             HHHHHHCSSSCEEEEEEC
T ss_pred             HHHHHhcCCCCEEEEEec
Confidence            999964368999999875

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=4.2e-35  Score=262.68  Aligned_cols=165  Identities=31%  Similarity=0.374  Sum_probs=151.7

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||++. +|++..++|+||+++|.|+|+|+|.|+++         ..+++
T Consensus        71 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~  150 (673)
T 1r9j_A           71 ALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHY  150 (673)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             HHHHHHHHHcCCCCCHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCE
Confidence            469999999999 99999999999999999999985 78999999999999999999999988542         14789


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecC-CCHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDG-HDVEHLVK  156 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG-~d~~~l~~  156 (176)
                      |+|++|||++++|++||++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +||| +|++++.+
T Consensus       151 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~  229 (673)
T 1r9j_A          151 TYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRK  229 (673)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHH
T ss_pred             EEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999998887665 5789999999999999 8999 99999999


Q ss_pred             HHHHHHhhCCCcEEEEeee
Q psy786          157 VSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       157 al~~a~~~~~~P~lI~~~~  175 (176)
                      |+++|.+..++|++|++++
T Consensus       230 Al~~A~~~~~~P~lI~~~T  248 (673)
T 1r9j_A          230 ALAEAKATKGKPKMIVQTT  248 (673)
T ss_dssp             HHHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHHHcCCCCEEEEEec
Confidence            9999975468999999875

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=100.00  E-value=3e-35  Score=261.63  Aligned_cols=164  Identities=30%  Similarity=0.466  Sum_probs=150.7

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC------CCcceEEEE
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD------KASYRTYCL   82 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~------~~~~~vv~~   82 (176)
                      +.+|++|+..|+ ++.|+|.+||++++.++|||++.+|+++.++|+||+++|.|+|+|+|.++++      ..+++|||+
T Consensus        70 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v  149 (632)
T 3l84_A           70 ALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCL  149 (632)
T ss_dssp             HHHHHHHHHHTCSCCHHHHTTTTCTTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEE
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHhcCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEE
Confidence            568999999999 9999999999999999999998889999999999999999999999998542      236889999


Q ss_pred             ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHH
Q psy786           83 VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKL  162 (176)
Q Consensus        83 ~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~  162 (176)
                      +|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++|||+|++++.+|+++|.
T Consensus       150 ~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~  228 (632)
T 3l84_A          150 CGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAK  228 (632)
T ss_dssp             EEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred             ECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998776554 4789999999999999999999999999999996


Q ss_pred             hhCCCcEEEEeee
Q psy786          163 QKAIGCVWIQRGC  175 (176)
Q Consensus       163 ~~~~~P~lI~~~~  175 (176)
                       ..++|+||++++
T Consensus       229 -~~~~P~lI~v~T  240 (632)
T 3l84_A          229 -KSTKPCLIIAKT  240 (632)
T ss_dssp             -TCSSCEEEEEEC
T ss_pred             -hCCCCEEEEEee
Confidence             478999999875

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=100.00  E-value=8.5e-35  Score=260.75  Aligned_cols=165  Identities=28%  Similarity=0.403  Sum_probs=150.2

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCC-CCCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTP-RLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~-~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.||++|+..|+ +|.|+|.+||++++.++|||++ .+|++++++|+||+++|.|+|+|+|.|+++.         .+++
T Consensus        95 ~~lYa~l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~  174 (690)
T 3m49_A           95 MLLYSLLHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHY  174 (690)
T ss_dssp             HHHHHHHHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCC
T ss_pred             HHHHHHHHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCe
Confidence            458999999999 9999999999999999999997 4899999999999999999999999985421         2688


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEe-cCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVV-DGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~v-dG~d~~~l~~a  157 (176)
                      |+|++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++| ||+|++++.+|
T Consensus       175 v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~v~DG~d~~~l~~A  253 (690)
T 3m49_A          175 TYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAYGWQVIRVEDGNDIEAIAKA  253 (690)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHHTCEEEEESCTTCHHHHHHH
T ss_pred             EEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHcCCcEEEEecCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998876554 478999999999999999 99999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|.+..++|+||++++
T Consensus       254 l~~a~~~~~~P~lI~v~T  271 (690)
T 3m49_A          254 IEEAKADEKRPTLIEVRT  271 (690)
T ss_dssp             HHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHhcCCCCEEEEEEe
Confidence            999964368999999875

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=100.00  E-value=8.9e-35  Score=261.19  Aligned_cols=164  Identities=29%  Similarity=0.396  Sum_probs=149.7

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCC---------Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDK---------ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~   78 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||+.. +|+++.++|+||+++|.|+|+|+|.|+++.         .+++
T Consensus       110 ~~lYa~l~l~G~~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~  189 (711)
T 3uk1_A          110 MLLYSLLHLTGYDLPIEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHH  189 (711)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             HHHHHHHHHhCCCCCHHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCe
Confidence            569999999999 99999999999999999999875 689999999999999999999999985421         1679


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEE-ecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVV-VDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-vdG~d~~~l~~a  157 (176)
                      |||++|||++++|+++|++++|++++||++++|+|||+|+++++++... .+|+.+++++|||++++ |||+|++++.+|
T Consensus       190 vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~A  268 (711)
T 3uk1_A          190 TYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYGWNVIPNVNGHDVDAIDAA  268 (711)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred             EEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998776654 47899999999999998 899999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|. ..++|+||++++
T Consensus       269 l~~A~-~~~~P~lI~v~T  285 (711)
T 3uk1_A          269 IAKAK-RSDKPSLICCKT  285 (711)
T ss_dssp             HHHHT-TCSSCEEEEEEC
T ss_pred             HHHHH-hCCCCEEEEEcc
Confidence            99996 468999999875

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=100.00  E-value=1.9e-34  Score=257.78  Aligned_cols=164  Identities=32%  Similarity=0.414  Sum_probs=150.0

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~   78 (176)
                      +.||++|+..|+ +|+|+|.+||++++.++|||++. +|++.+++|+||+++|.|+|+|+|.++++         ..+++
T Consensus        73 ~~lYa~l~l~G~~~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~  152 (651)
T 2e6k_A           73 MLLYAVLHLTGYDLPLEELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHY  152 (651)
T ss_dssp             HHHHHHHHHTTCSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             HHHHHHHHHhCCCCCHHHHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCE
Confidence            458999999999 99999999999999889999965 68999999999999999999999987532         14789


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a  157 (176)
                      |||++|||++++|+++|++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +|||+|++++.++
T Consensus       153 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a  231 (651)
T 2e6k_A          153 TYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKA  231 (651)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHH
T ss_pred             EEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998876655 5789999999999999 9999999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|++ .++|+||++++
T Consensus       232 l~~a~~-~~~P~lI~~~t  248 (651)
T 2e6k_A          232 IKLAKL-DERPTLIAVRS  248 (651)
T ss_dssp             HHHHHH-SSSCEEEEEEC
T ss_pred             HHHHHH-CCCCEEEEEEe
Confidence            999975 78999999875

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=100.00  E-value=2.7e-34  Score=257.71  Aligned_cols=165  Identities=31%  Similarity=0.420  Sum_probs=150.4

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC----C-----CcceE
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD----K-----ASYRT   79 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~----~-----~~~~v   79 (176)
                      +.||++|+..|+ ++.|+|.+||++++.++|||++..|++..++|+||+++|.|+|+|+|.++++    +     .+++|
T Consensus        72 ~~lYa~~~l~G~~~~~~~l~~~r~~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v  151 (680)
T 1gpu_A           72 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYT  151 (680)
T ss_dssp             HHHHHHHHHTTCSCCHHHHTTTTCTTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCE
T ss_pred             HHHHHHHHHhCCCCCHHHHHhhcccCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeE
Confidence            568999999999 9999999999999988999998778999999999999999999999988542    1     26799


Q ss_pred             EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCC-CHHHHHHH
Q psy786           80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGH-DVEHLVKV  157 (176)
Q Consensus        80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~-d~~~l~~a  157 (176)
                      ||++|||++++|++||++++|++++||++++|+|||+|++++++.... .+++.+++++|||+++ +|||+ |++++.++
T Consensus       152 v~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~a  230 (680)
T 1gpu_A          152 YVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKA  230 (680)
T ss_dssp             EEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHH
T ss_pred             EEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999998776554 4689999999999999 99999 99999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|++..++|+||++++
T Consensus       231 l~~A~~~~~~P~lI~~~T  248 (680)
T 1gpu_A          231 IAQAKLSKDKPTLIKMTT  248 (680)
T ss_dssp             HHHHHHCTTSCEEEEEEC
T ss_pred             HHHHHHCCCCCEEEEEEe
Confidence            999975468999999875

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=100.00  E-value=3.4e-34  Score=256.93  Aligned_cols=165  Identities=26%  Similarity=0.344  Sum_probs=150.3

Q ss_pred             hHHHHHHHHcCC--CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcc
Q psy786           10 TNRSKAWAEAGL--FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASY   77 (176)
Q Consensus        10 ~~~ya~l~~~G~--~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~   77 (176)
                      +.||++|+..|+  +|.|+|.+||++++.++|||++. +|++.+++|+||+++|.|+|+|+|.++++         .+++
T Consensus        81 ~~lYa~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~  160 (675)
T 1itz_A           81 MLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDH  160 (675)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred             HHHHHHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCC
Confidence            458999999999  99999999999999889999975 78999999999999999999999987532         1578


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCC-CHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGH-DVEHLV  155 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~-d~~~l~  155 (176)
                      +|||++|||++++|++||++++|++++||++++|+|||+|++++++.... ..|+.+++++|||+++ +|||+ |++++.
T Consensus       161 ~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~  239 (675)
T 1itz_A          161 YTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIR  239 (675)
T ss_dssp             CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHH
T ss_pred             EEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHH
Confidence            99999999999999999999999999999999999999999998776654 6789999999999999 89999 999999


Q ss_pred             HHHHHHHhhCCCcEEEEeee
Q psy786          156 KVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       156 ~al~~a~~~~~~P~lI~~~~  175 (176)
                      +|+++|++..++|+||++++
T Consensus       240 ~al~~a~~~~~~P~lI~~~T  259 (675)
T 1itz_A          240 AAIKEAKAVTDKPTLIKVTT  259 (675)
T ss_dssp             HHHHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHHHHCCCCeEEEEEee
Confidence            99999975468999999875

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=100.00  E-value=4.9e-34  Score=255.72  Aligned_cols=165  Identities=27%  Similarity=0.370  Sum_probs=149.4

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC----C-----Ccce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD----K-----ASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~----~-----~~~~   78 (176)
                      +.||++++..|+ ++.|+|.+||++++.++|||++. +|++..++|+||+++|.|+|+|+|.++++    .     .+++
T Consensus        69 ~~lYa~~~l~G~~~~~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~  148 (669)
T 2r8o_A           69 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY  148 (669)
T ss_dssp             HHHHHHHHHHTCSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             HHHHHHHHHcCCCCCHHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCe
Confidence            458999999999 99999999999999889999864 78999999999999999999999987532    1     3679


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a  157 (176)
                      |||++|||++++|++||++++|++++||++++|+|||+|++++++.... ..++.+++++|||+++ +|||+|++++.++
T Consensus       149 v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~a  227 (669)
T 2r8o_A          149 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRA  227 (669)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred             EEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999998776544 4689999999999999 9999999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +++|++..++|+||++++
T Consensus       228 l~~a~~~~~~P~lI~~~T  245 (669)
T 2r8o_A          228 VEEARAVTDKPSLLMCKT  245 (669)
T ss_dssp             HHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHhcCCCCEEEEEEe
Confidence            999975468999999875

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=99.97  E-value=6.2e-31  Score=223.18  Aligned_cols=161  Identities=18%  Similarity=0.172  Sum_probs=137.5

Q ss_pred             HHHHHHcCCCCHHHHhhhhhc------CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC
Q psy786           13 SKAWAEAGLFPVSELKNLRKI------DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG   86 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~------~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG   86 (176)
                      +.+++.+|+.+.+.|..|+..      |+.+++|+......+...+|+||+++|.|+|+|+|.++. +.+++|||++|||
T Consensus       116 ~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~~~-~~~~~vv~~~GDG  194 (400)
T 2bfd_A          116 AGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRA-NANRVVICYFGEG  194 (400)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHHH-TCCCCEEEEEETT
T ss_pred             HHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhhhh-CCCCeEEEEECch
Confidence            467888999888888888764      456777765432235567899999999999999999864 4578999999999


Q ss_pred             ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--
Q psy786           87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--  164 (176)
Q Consensus        87 ~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--  164 (176)
                      ++++|.++|+|++|++++|| +++|++||+|++++++....+.+++.+++++|||++++|||+|++++.+++++|+++  
T Consensus       195 a~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar  273 (400)
T 2bfd_A          195 AASEGDAHAGFNFAATLECP-IIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAV  273 (400)
T ss_dssp             GGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             hhhcChHHHHHHHHHHHCcC-EEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 777888899999988776666678999999999999999999999999999999862  


Q ss_pred             -CCCcEEEEeee
Q psy786          165 -AIGCVWIQRGC  175 (176)
Q Consensus       165 -~~~P~lI~~~~  175 (176)
                       .++|+|||++|
T Consensus       274 ~~~~P~lIe~~t  285 (400)
T 2bfd_A          274 AENQPFLIEAMT  285 (400)
T ss_dssp             HHTCCEEEEEEC
T ss_pred             hCCCCEEEEEEe
Confidence             57999999876

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.97  E-value=3.9e-30  Score=235.36  Aligned_cols=166  Identities=23%  Similarity=0.250  Sum_probs=148.5

Q ss_pred             hHHHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCC-CCc-cccCCcccchhHHHHHHHHHhchhc------CCCcceE
Q psy786           10 TNRSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPR-LNF-IDVGTGSLGQGLSVAAGMAYVGKYF------DKASYRT   79 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~-~~~-~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~v   79 (176)
                      +.+|+.++..|+++.|+|.+||+.  +.++++||+|. .|+ +.+++|+||++++.|+|+|++++++      ++.+++|
T Consensus       145 p~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v  224 (886)
T 2qtc_A          145 PGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTV  224 (886)
T ss_dssp             HHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCE
T ss_pred             HHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEE
Confidence            458999999999999999999997  45899999986 675 8899999999999999999999863      4567899


Q ss_pred             EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEe------------
Q psy786           80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVV------------  146 (176)
Q Consensus        80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~v------------  146 (176)
                      ||++|||++++|++||++++|++++|+++++|+|||.+++++++... ....++.++++++||++++|            
T Consensus       225 ~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~  304 (886)
T 2qtc_A          225 YAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRK  304 (886)
T ss_dssp             EEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHH
T ss_pred             EEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHcc
Confidence            99999999999999999999999999999999999999999887653 23578999999999999988            


Q ss_pred             ---------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCcE
Q psy786          147 ---------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGCV  169 (176)
Q Consensus       147 ---------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P~  169 (176)
                                                                               ||||++++.+|+++|.+...+|+
T Consensus       305 ~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~~~~Pt  384 (886)
T 2qtc_A          305 DTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKAT  384 (886)
T ss_dssp             CSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHCCSSCE
T ss_pred             CCchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHcCCCCE
Confidence                                                                     69999999999999975556999


Q ss_pred             EEEeee
Q psy786          170 WIQRGC  175 (176)
Q Consensus       170 lI~~~~  175 (176)
                      +|++++
T Consensus       385 lI~~~T  390 (886)
T 2qtc_A          385 VILAHT  390 (886)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            999875

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=99.97  E-value=5.6e-30  Score=215.22  Aligned_cols=162  Identities=19%  Similarity=0.199  Sum_probs=138.3

Q ss_pred             HHHHHHHcCCCCHHHHhhhhh------cCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786           12 RSKAWAEAGLFPVSELKNLRK------IDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD   85 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~------~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD   85 (176)
                      .|++++.+|+.+.+.|..|++      .|+.+++|+......+...+|++|+++|.|+|+|++.|+ .+++++|||++||
T Consensus        97 ~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~-~~~~~~vv~i~GD  175 (367)
T 1umd_A           97 DHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKL-LRTGQVAVCTFGD  175 (367)
T ss_dssp             THHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHH-TTCCCCEEEEEET
T ss_pred             HHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHH-hCCCCeEEEEEcc
Confidence            699999999988999999987      456677786432233445789999999999999999885 4567899999999


Q ss_pred             CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786           86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-  164 (176)
Q Consensus        86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-  164 (176)
                      |++++|.++|+|++|+++++| +++|++||+|+++++.....+.+++.+++++||+++++|||+|+.++.+++++|+++ 
T Consensus       176 Ga~~~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a  254 (367)
T 1umd_A          176 GATSEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERA  254 (367)
T ss_dssp             GGGGSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             cccccCcHHHHHHHHHHhCcC-EEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence            999999899999999999999 777788888999887655555678999999999999999999999999999888762 


Q ss_pred             --CCCcEEEEeee
Q psy786          165 --AIGCVWIQRGC  175 (176)
Q Consensus       165 --~~~P~lI~~~~  175 (176)
                        .++|+|||+.|
T Consensus       255 ~~~~gP~lIe~~t  267 (367)
T 1umd_A          255 RRGEGPSLVELRV  267 (367)
T ss_dssp             HTTCCCEEEEEEC
T ss_pred             HhcCCCEEEEEEe
Confidence              47999999876

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.96  E-value=1e-28  Score=219.80  Aligned_cols=157  Identities=24%  Similarity=0.330  Sum_probs=126.6

Q ss_pred             HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786           13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG   91 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G   91 (176)
                      |+.++.+|+  .+++.++|++++ +.|||++. .++..+++|+||+++|+|+|+|+|.++ .+++++|||++|||++++|
T Consensus        83 y~~~~l~G~--~~~~~~~r~~~g-~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~-~~~~~~Vv~v~GDG~~~~G  158 (621)
T 2o1s_A           83 YPHKILTGR--RDKIGTIRQKGG-LHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEK-EGKNRRTVCVIGDGAITAG  158 (621)
T ss_dssp             HHHHHTTTT--GGGGGGTTSTTS-CCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHH-HTSCCCEEEEEETTGGGSH
T ss_pred             HHHHHHhCC--HhhhhcccccCC-CCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHH-hCCCCeEEEEEchhhhhcc
Confidence            999999997  688889999985 78999875 466667899999999999999999885 4567899999999999999


Q ss_pred             hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc----------------------------------cHHH-----
Q psy786           92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ----------------------------------TEVY-----  132 (176)
Q Consensus        92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~----------------------------------~~~~-----  132 (176)
                      +++|+|++|+++++| +++|+|||+|+++++++....                                  ..++     
T Consensus       159 ~~~EaL~~A~~~~~p-li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~  237 (621)
T 2o1s_A          159 MAFEAMNHAGDIRPD-MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMV  237 (621)
T ss_dssp             HHHHHHHHHHHHCCS-EEEEEEECC-------------------------------------------------------
T ss_pred             HHHHHHHHHHhhCCC-EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhcc
Confidence            999999999999998 678899999999876542110                                  0122     


Q ss_pred             --HHHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          133 --RKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       133 --~~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        .+++++|||+++ +|||+|++++.+++++|+ ..++|++|++++
T Consensus       238 ~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~-~~~gP~lI~v~t  282 (621)
T 2o1s_A          238 VPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR-DLKGPQFLHIMT  282 (621)
T ss_dssp             -CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH-HSCSEEEEEEEC
T ss_pred             ChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH-HcCCCEEEEEEE
Confidence              578999999999 999999999999999997 468999999875

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=99.96  E-value=4.3e-29  Score=209.84  Aligned_cols=157  Identities=20%  Similarity=0.185  Sum_probs=129.7

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhc--CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKI--DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESA   89 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~--~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~   89 (176)
                      .+.++...|..+.+.+..+...  |+  ..|++   .++..++|+||+++|+|+|+|+|.++ .+++++|||++|||+++
T Consensus       104 ~~~~~~~~G~~~~~~~~el~G~~~G~--~~h~~---~~~~~~~g~lG~~lp~AvG~A~A~~~-~~~~~~vv~i~GDGa~~  177 (368)
T 1w85_A          104 DVPQIIWHGLPLYQAFLFSRGHFHGN--QIPEG---VNVLPPQIIIGAQYIQAAGVALGLKM-RGKKAVAITYTGDGGTS  177 (368)
T ss_dssp             CHHHHHHTTCCHHHHHHHHHTCGGGG--CCCTT---CCBCCCCCSTTHHHHHHHHHHHHHHH-TTCSCCEEEEEETGGGG
T ss_pred             hHHHHHhcCCCHHHHHHHHCCCCCCC--CCCcc---cccCCCccccCccccHHHHHHHHhHh-hCCCCeEEEEEchhhhh
Confidence            4667788897666666565432  32  22322   24556789999999999999999985 45678999999999999


Q ss_pred             CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CC
Q psy786           90 EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AI  166 (176)
Q Consensus        90 ~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~  166 (176)
                      +|.++|+|++|++++|| +++|++||+|+++++.....+.+++.+++++|||++++|||+|++++.+++++|+++   .+
T Consensus       178 ~G~~~Eal~~A~~~~lp-vi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~  256 (368)
T 1w85_A          178 QGDFYEGINFAGAFKAP-AIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGE  256 (368)
T ss_dssp             SHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTS
T ss_pred             hcHHHHHHHHHHHHCcC-EEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999 777888889999887666666678999999999999999999999999999999862   47


Q ss_pred             CcEEEEeee
Q psy786          167 GCVWIQRGC  175 (176)
Q Consensus       167 ~P~lI~~~~  175 (176)
                      +|+|||+.|
T Consensus       257 gP~lIe~~t  265 (368)
T 1w85_A          257 GPTLIETLC  265 (368)
T ss_dssp             CCEEEEEEC
T ss_pred             CCEEEEEEe
Confidence            999999976

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.96  E-value=1.3e-28  Score=219.44  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=132.1

Q ss_pred             HHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCc
Q psy786           13 SKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEG   91 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G   91 (176)
                      |+.+...|+  .+++..+|++++ +.|||++. .++..+++|+||+++|+|+|+|+|.++ .+++++|||++|||++++|
T Consensus        85 y~~~~l~G~--~~~~~~~r~~~g-~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~-~~~~~~Vv~v~GDG~~~~G  160 (629)
T 2o1x_A           85 YAHKILTGR--RDQMADIKKEGG-ISGFTKVSESEHDAITVGHASTSLTNALGMALARDA-QGKDFHVAAVIGDGSLTGG  160 (629)
T ss_dssp             HHHHHTTTT--GGGGGGTTSTTS-CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHH-HTCCCCEEEEEETTGGGSH
T ss_pred             HHHHHHhCc--HhHHhCcccCCC-CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHH-hCCCCeEEEEEchhhhhcc
Confidence            888999997  577889999985 68998864 566778999999999999999999875 4567899999999999999


Q ss_pred             hHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc--------------------------c---------HHH----
Q psy786           92 SIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ--------------------------T---------EVY----  132 (176)
Q Consensus        92 ~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~--------------------------~---------~~~----  132 (176)
                      +++|+|++|+++++| +++|+|||+|+++++++....                          .         .++    
T Consensus       161 ~~~EaL~~A~~~~~p-li~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~  239 (629)
T 2o1x_A          161 MALAALNTIGDMGRK-MLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHF  239 (629)
T ss_dssp             HHHHHHHHHHHHCCS-EEEEEEECSBSSSBCCSSHHHHC-----------------------------------------
T ss_pred             HHHHHHHHHHhhCCC-EEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhh
Confidence            999999999999999 678899999999876542100                          0         132    


Q ss_pred             ---H--HHHhhcCceEE-EecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          133 ---R--KRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       133 ---~--~~a~a~G~~~~-~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                         .  +++++|||+++ +|||+|++++.+++++|+ ..++|++|++++
T Consensus       240 ~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~-~~~~P~lI~v~t  287 (629)
T 2o1x_A          240 FDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV-DLDGPTILHIVT  287 (629)
T ss_dssp             ----CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT-TSSSEEEEEEEC
T ss_pred             cCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH-hcCCCEEEEEEE
Confidence               3  78999999999 999999999999999996 468999999875

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=99.95  E-value=3.3e-28  Score=206.65  Aligned_cols=161  Identities=19%  Similarity=0.188  Sum_probs=127.1

Q ss_pred             HHHHHHcCCCCHHHHhhhhhc------CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC
Q psy786           13 SKAWAEAGLFPVSELKNLRKI------DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG   86 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~r~~------~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG   86 (176)
                      +..++..|+.+.+.|..+...      |...+.|......++...+|+||+++|+|+|+|+|.++ .+++++|||++|||
T Consensus       135 ~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~-~~~~~~vv~i~GDG  213 (407)
T 1qs0_A          135 QSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAI-KGDTKIASAWIGDG  213 (407)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHH-TTCCCCEEEEEETG
T ss_pred             hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHH-hCCCCEEEEEECCc
Confidence            345556786555555554321      21222232211224455789999999999999999985 45678999999999


Q ss_pred             ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccc-ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786           87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQH-QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-  164 (176)
Q Consensus        87 ~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~-~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-  164 (176)
                      ++++|.++|+|++|++|+|| +++|++||+|+++++..... ..+++++++++|||++++|||+|++++.+++++|++. 
T Consensus       214 a~~~G~~~Eal~~A~~~~lp-vi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~a  292 (407)
T 1qs0_A          214 ATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERA  292 (407)
T ss_dssp             GGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             hhhcChHHHHHHHHHHHCcC-EEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999 88889999999988766544 4578999999999999999999999999999999863 


Q ss_pred             --CCCcEEEEeee
Q psy786          165 --AIGCVWIQRGC  175 (176)
Q Consensus       165 --~~~P~lI~~~~  175 (176)
                        .++|+|||+.|
T Consensus       293 r~~~gP~lIe~~t  305 (407)
T 1qs0_A          293 RRGLGPSLIEWVT  305 (407)
T ss_dssp             HTTSCCEEEEEEC
T ss_pred             HhcCCCEEEEEEe
Confidence              57999999976

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=99.94  E-value=4.4e-27  Score=197.36  Aligned_cols=158  Identities=23%  Similarity=0.260  Sum_probs=124.7

Q ss_pred             HHHHHHHcCCCCHHHHhhhhhc--CC----CCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECC
Q psy786           12 RSKAWAEAGLFPVSELKNLRKI--DS----DLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGD   85 (176)
Q Consensus        12 ~ya~l~~~G~~~~e~l~~~r~~--~~----~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GD   85 (176)
                      .+.++..+|+.+.+.+..|...  |.    +-..|.  ....+...+|+||+++|+|+|+|+|.++ .+++++|||++||
T Consensus        95 ~~~~~~~~G~~~~~i~~e~~g~~~g~~~g~gg~~H~--~~~~~~~~~g~~G~~lp~A~G~A~A~~~-~~~~~~vv~~~GD  171 (365)
T 2ozl_A           95 AHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHM--YAKNFYGGNGIVGAQVPLGAGIALACKY-NGKDEVCLTLYGD  171 (365)
T ss_dssp             CHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCC--CBTTBCCCCCSTTTHHHHHHHHHHHHHH-HTCCCCEEEEEET
T ss_pred             HHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCCCc--CccccCCCcchhhhhhHHHHHHHHHHHh-cCCCceEEEEECc
Confidence            6788899997766666666332  10    111222  1124455679999999999999999985 3567899999999


Q ss_pred             CccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-
Q psy786           86 GESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-  164 (176)
Q Consensus        86 G~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-  164 (176)
                      |++++|.++|+|++|+.|+|| +++|++||+|+++++.......++|.+  +++|+++++|||+|++++.+++++|+++ 
T Consensus       172 Ga~~~G~~~Ealn~A~~~~lp-vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~  248 (365)
T 2ozl_A          172 GAANQGQIFEAYNMAALWKLP-CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYC  248 (365)
T ss_dssp             TGGGCHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHH
T ss_pred             hhhhccHHHHHHHHHHHHCcC-EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999 667789999999876554444456665  7999999999999999999999999853 


Q ss_pred             --CCCcEEEEeee
Q psy786          165 --AIGCVWIQRGC  175 (176)
Q Consensus       165 --~~~P~lI~~~~  175 (176)
                        .++|+|||+.|
T Consensus       249 r~~~gP~lIe~~t  261 (365)
T 2ozl_A          249 RSGKGPILMELQT  261 (365)
T ss_dssp             HTTCCCEEEEEEC
T ss_pred             HhCCCCEEEEEEe
Confidence              47999999976

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.92  E-value=5.7e-25  Score=199.14  Aligned_cols=161  Identities=19%  Similarity=0.234  Sum_probs=138.1

Q ss_pred             hHHHHHHHHcCCCCH---------HHHhh-hhhcCC--CCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786           10 TNRSKAWAEAGLFPV---------SELKN-LRKIDS--DLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~---------e~l~~-~r~~~~--~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      +.||+.|+..|.++.         |+|.+ ||++..  +++|||.+.+|+++.++|++|++++.|+|+|+..+     +.
T Consensus       120 p~lYa~l~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~~tpGve~~tG~LGqGls~AvG~A~~~~-----~~  194 (845)
T 3ahc_A          120 PAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAPETPGSIHEGGELGYALSHAYGAVMNNP-----SL  194 (845)
T ss_dssp             HHHHHHHHHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCTTSTTCSCCCSSTTCHHHHHHHHHTTCT-----TC
T ss_pred             HHHHHHHHHcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCCCCCCeecCCCCccchHhHHhhhhhcCC-----CC
Confidence            579999999998653         77877 788831  29999998899999999999999999999997554     77


Q ss_pred             eEEEEECCCccCCch---HHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEE-EecC-C--
Q psy786           78 RTYCLVGDGESAEGS---IWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAV-VVDG-H--  149 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~---~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~-~vdG-~--  149 (176)
                      +|+|++|||+.++|.   .||+..++..+++.+|+.|+|+|++++++++... .+..++.+++++|||+++ .||| +  
T Consensus       195 ~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~  274 (845)
T 3ahc_A          195 FVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNE  274 (845)
T ss_dssp             EEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSC
T ss_pred             eEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCc
Confidence            999999999999999   9999999999999999999999999999988643 356889999999999999 9999 8  


Q ss_pred             CHHHHHHHHHHHHh--------------h--CCCc--EEEEeee
Q psy786          150 DVEHLVKVSSFKLQ--------------K--AIGC--VWIQRGC  175 (176)
Q Consensus       150 d~~~l~~al~~a~~--------------~--~~~P--~lI~~~~  175 (176)
                      |++++.+++++|++              .  .++|  .+|.++.
T Consensus       275 D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT  318 (845)
T 3ahc_A          275 DHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRT  318 (845)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEC
Confidence            99999988764441              1  2579  8887764

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=99.88  E-value=2.4e-23  Score=190.30  Aligned_cols=125  Identities=19%  Similarity=0.151  Sum_probs=107.3

Q ss_pred             CCcccchhHHHHHHHHHhchhcCC---------CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCc
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDK---------ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLG  118 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~---------~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~  118 (176)
                      ..++||+++|.|+|+|+|.++.+.         .+..+||++|||+| ++|.++|+|++|+.++||  .+++|++||+|+
T Consensus       243 n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g  322 (868)
T 2yic_A          243 NPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG  322 (868)
T ss_dssp             CCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB
T ss_pred             CCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc
Confidence            467899999999999999886421         45789999999997 899999999999999999  567777788999


Q ss_pred             cccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          119 QSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       119 ~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      ++++.....+.+++.+++++|||++++|||+|++++.+++++|+++   .++|+|||+.|
T Consensus       323 ~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~t  382 (868)
T 2yic_A          323 FTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC  382 (868)
T ss_dssp             TTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             cccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9987554444455678999999999999999999999999999863   47999999976

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=99.87  E-value=1e-22  Score=190.04  Aligned_cols=170  Identities=18%  Similarity=0.117  Sum_probs=125.7

Q ss_pred             CCCChHHHHHHHHcCCCCHHHHhhhhhc--CC------CCCCCCCCC----C--------CccccCCcccchhHHHHHHH
Q psy786            6 IPFRTNRSKAWAEAGLFPVSELKNLRKI--DS------DLEGHPTPR----L--------NFIDVGTGSLGQGLSVAAGM   65 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~--~~------~l~~~~~~~----~--------~~~~~~~g~~G~~l~~AvG~   65 (176)
                      |+||.-+....-.+|+.+.+.|..|...  +.      ....|....    .        -.+...+++||+++|.|+|+
T Consensus       423 m~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~  502 (1113)
T 2xt6_A          423 MPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGL  502 (1113)
T ss_dssp             CCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHH
T ss_pred             ccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHH
Confidence            4688876666666897655555555221  11      001111000    0        01223468899999999999


Q ss_pred             HHhchhcCC---------CcceEEEEECCCcc-CCchHHHHHHHhhhcCCC--cEEEEEecCCCccccCcccccccHHHH
Q psy786           66 AYVGKYFDK---------ASYRTYCLVGDGES-AEGSIWEALHFASYYKLD--NLCVIFDINRLGQSEPTSLQHQTEVYR  133 (176)
Q Consensus        66 A~a~~~~~~---------~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp--~liiV~~nn~~~~~~~~~~~~~~~~~~  133 (176)
                      |+|.++.+.         .+..++|++|||+| ++|.+||++++|+.++||  .+++|++||+|++++++....+..++.
T Consensus       503 A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~  582 (1113)
T 2xt6_A          503 VRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCT  582 (1113)
T ss_dssp             HHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTT
T ss_pred             HHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHH
Confidence            999986432         46789999999996 899999999999999999  677778889999998755343334566


Q ss_pred             HHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          134 KRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       134 ~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      +++++|||++++|||+|++++.+|+++|+++   .++|+|||+.|
T Consensus       583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~t  627 (1113)
T 2xt6_A          583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLC  627 (1113)
T ss_dssp             GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             HHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence            7899999999999999999999999999862   37999999976

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=99.87  E-value=3e-22  Score=177.09  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=101.9

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc---
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ---  126 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~---  126 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+..   
T Consensus       410 ~~~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~  482 (590)
T 1v5e_A          410 PLFATMGIAIPGGLGAKNTYP-----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNK  482 (590)
T ss_dssp             CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCC
T ss_pred             CCCCcccChHHHHHHHHHhCC-----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcC
Confidence            468999999999999999976     6799999999999974  588999999999999999999999998653321   


Q ss_pred             ------cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--CCCcEEEEeee
Q psy786          127 ------HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--AIGCVWIQRGC  175 (176)
Q Consensus       127 ------~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--~~~P~lI~~~~  175 (176)
                            ...+||.+++++||+++++|+  +++++.+++++|++.  .++|+|||+.+
T Consensus       483 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~gp~liev~~  537 (590)
T 1v5e_A          483 NLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKI  537 (590)
T ss_dssp             SCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence                  234799999999999999997  899999999999853  28999999875

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=99.86  E-value=2.3e-22  Score=177.01  Aligned_cols=117  Identities=18%  Similarity=0.183  Sum_probs=101.6

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|+|++|||+|++  .+++|++|+++++|++++|+|||+|++.+..+    
T Consensus       416 ~~g~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~  488 (566)
T 1ozh_A          416 SNGQQTMGVALPWAIGAWLVNP-----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKY  488 (566)
T ss_dssp             CCTTCCTTCHHHHHHHHHHHST-----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHH
T ss_pred             CCCcccccchHHHHHHHHHhCC-----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhc
Confidence            3467999999999999999986     689999999999997  45789999999999999999999999876432    


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ......||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       489 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~  541 (566)
T 1ozh_A          489 QRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM-DVDGPAVVAIPV  541 (566)
T ss_dssp             SSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH-HSSSCEEEEEEB
T ss_pred             CCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 22334789999999999999997  7899999999997 478999999875

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=99.86  E-value=1.3e-21  Score=179.80  Aligned_cols=169  Identities=14%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             CCCChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC-C---------Cc------cccCCcccchhHHHHHHHHHhc
Q psy786            6 IPFRTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR-L---------NF------IDVGTGSLGQGLSVAAGMAYVG   69 (176)
Q Consensus         6 ~~~~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~-~---------~~------~~~~~g~~G~~l~~AvG~A~a~   69 (176)
                      |+||.-+....-.+|+.+.+.|..|.....+..+-.+.. +         ++      +.+..+++|+++|+|+|+|+|.
T Consensus       258 ~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~  337 (933)
T 2jgd_A          258 MAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRAR  337 (933)
T ss_dssp             CCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHH
Confidence            467776655554589776666666643211111101100 0         01      1245678999999999999998


Q ss_pred             hhcC----CCcceEEEEECCCcc-CCchHHHHHHHhhhcCCC---cEEEEEecCCCcccc-CcccccccHHHHHHHhhcC
Q psy786           70 KYFD----KASYRTYCLVGDGES-AEGSIWEALHFASYYKLD---NLCVIFDINRLGQSE-PTSLQHQTEVYRKRLDAFG  140 (176)
Q Consensus        70 ~~~~----~~~~~vv~~~GDG~~-~~G~~~eal~~a~~~~lp---~liiV~~nn~~~~~~-~~~~~~~~~~~~~~a~a~G  140 (176)
                      ++.+    +.+..+||++|||++ ++|+++|+|++|+.+++|   ++++ ++||+|++++ +........++.+++++||
T Consensus       338 ~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~v-v~nN~~~ist~~~~~~~~~~~~~~~a~a~g  416 (933)
T 2jgd_A          338 LDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRI-VINNQVGFTTSNPLDARSTPYCTDIGKMVQ  416 (933)
T ss_dssp             HTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEE-EEECC---------------CGGGGGGTTT
T ss_pred             HhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEE-EEeCCccccCCCHHhcccchhHHHHHHHcC
Confidence            8643    256789999999998 899999999999999999   6555 5578899998 7776555566788999999


Q ss_pred             ceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          141 FNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       141 ~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      |++++|||+|++++.+++++|+++   ..+|+|||+.|
T Consensus       417 ~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~t  454 (933)
T 2jgd_A          417 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVC  454 (933)
T ss_dssp             CCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEee
Confidence            999999999999999999999853   36899999876

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=99.86  E-value=5e-22  Score=178.22  Aligned_cols=117  Identities=18%  Similarity=0.145  Sum_probs=100.9

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|||++|||+|++  .+++|++|+++++|+++||+|||+|++.+..+    
T Consensus       509 sg~~G~mG~~lpaAiGaalA~p-----~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~  581 (677)
T 1t9b_A          509 SGGLGTMGYGLPAAIGAQVAKP-----ESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFY  581 (677)
T ss_dssp             CCSSCCTTCHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHS
T ss_pred             CCCcchhhchHHHHHHHHHhCC-----CCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhc
Confidence            3467999999999999999976     789999999999996  45679999999999999999999999865321    


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .....+||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       582 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~  635 (677)
T 1t9b_A          582 EHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV-STKGPVLLEVEV  635 (677)
T ss_dssp             TTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH-HCSSCEEEEEEB
T ss_pred             CCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHH-HCCCcEEEEEEe
Confidence                  11234689999999999999996  8999999999997 468999999875

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=99.86  E-value=3.9e-22  Score=174.03  Aligned_cols=113  Identities=24%  Similarity=0.311  Sum_probs=99.1

Q ss_pred             cccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-------
Q psy786           53 GSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-------  125 (176)
Q Consensus        53 g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-------  125 (176)
                      |+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+.       
T Consensus       401 g~~G~~l~~A~G~a~a~~-----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~  473 (528)
T 1q6z_A          401 GGLGFALPAAIGVQLAEP-----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENV  473 (528)
T ss_dssp             CCTTSHHHHHHHHHHHCT-----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSC
T ss_pred             ccccchHHHHHHHHHhCC-----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCc
Confidence            999999999999999986     6789999999999975  67899999999999999999999998654311       


Q ss_pred             ---ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 ---QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ---~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                         .....|+.+++++||+++++|+  +.+++.+++++++ ..++|+|||+.+
T Consensus       474 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~  523 (528)
T 1q6z_A          474 PGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL-SAKGPVLIEVST  523 (528)
T ss_dssp             CSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH-TCSSCEEEEEEB
T ss_pred             ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-HCCCcEEEEEEe
Confidence               1135689999999999999997  7899999999997 468999999975

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=99.85  E-value=5e-22  Score=174.98  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=101.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+     
T Consensus       433 ~g~g~mG~~l~~AiGaa~a~~-----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~  505 (573)
T 2iht_A          433 AGCSSFGYGIPAAIGAQMARP-----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHH  505 (573)
T ss_dssp             SSSCCTTCHHHHHHHHHHHST-----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHS
T ss_pred             CCCcccccHHHHHHHHHHhCC-----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcC
Confidence            467999999999999999986     6799999999999974  5789999999999999999999999876421     


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                            .....+|+.+++++||+++++|+  +.+++.+++++|+ ..++|+|||+.+
T Consensus       506 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~  559 (573)
T 2iht_A          506 RSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA-ELGRPFLIEVPV  559 (573)
T ss_dssp             SCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH-TSSSCEEEEEEB
T ss_pred             CCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                  22334689999999999999996  8999999999997 478999999975

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=99.85  E-value=1.1e-21  Score=172.45  Aligned_cols=118  Identities=21%  Similarity=0.210  Sum_probs=101.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+   +++++|+|++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+     
T Consensus       416 ~g~g~~G~~l~~AiGaa~a~~---~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~  490 (563)
T 2uz1_A          416 GYLGSMGVGFGTALGAQVADL---EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVG  490 (563)
T ss_dssp             CTTCCTTTHHHHHHHHHHHHH---HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTC
T ss_pred             CCCccccChHHHHHHHHHHhh---CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcC
Confidence            457999999999999999983   126899999999999975  5689999999999999999999999876421     


Q ss_pred             --cc----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 --LQ----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 --~~----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        ..    ....|+.+++++||+++++|+  +++++.+++++|++ .++|+|||+.+
T Consensus       491 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~-~~gp~liev~~  544 (563)
T 2uz1_A          491 PNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA-HNRPACINVAV  544 (563)
T ss_dssp             TTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH-SSSCEEEEEEC
T ss_pred             CCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH-CCCCEEEEEEe
Confidence              11    134699999999999999996  89999999999974 78999999875

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=99.85  E-value=7.2e-22  Score=173.71  Aligned_cols=117  Identities=14%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|++  .+++|++|+++++|++++|+|||+|++.+..+.    
T Consensus       406 ~~~g~mG~~l~~A~G~ala~~-----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~  478 (566)
T 2vbi_A          406 MQWGHIGWSVPSAFGNAMGSQ-----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYN  478 (566)
T ss_dssp             TTTCCTTTHHHHHHHHHHTCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGG
T ss_pred             CcccchhhHHHHHHHHHHhCC-----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCcc
Confidence            468999999999999999976     689999999999996  457799999999999999999999999875432    


Q ss_pred             ccccHHHHHHHhhcCc-----eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 QHQTEVYRKRLDAFGF-----NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 ~~~~~~~~~~a~a~G~-----~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .....||.+++++||+     ++++|+  +++++.++++++++..++|+|||+.+
T Consensus       479 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~~gp~liev~~  531 (566)
T 2vbi_A          479 YIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKANTRGPTLIECQI  531 (566)
T ss_dssp             CCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred             CCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            2234689999999999     999997  89999999999974338999999875

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=99.85  E-value=9.8e-22  Score=174.18  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=99.8

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC-------
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP-------  122 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~-------  122 (176)
                      ...|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|+++||+||++|++...       
T Consensus       417 ~~~g~~G~~l~~A~Gaala~~-----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~  489 (603)
T 4feg_A          417 NLFATMGVGIPGAIAAKLNYP-----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ  489 (603)
T ss_dssp             CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCS
T ss_pred             cccccccchhHHHhhHHHhCC-----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcC
Confidence            357999999999999999986     6899999999999874  67799999999999999999999997321       


Q ss_pred             ---cccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786          123 ---TSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC  175 (176)
Q Consensus       123 ---~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~  175 (176)
                         .......+|+.+++++||+++++|+  +++++.+++++|++ ..++|+|||+.+
T Consensus       490 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~~~~gP~lIev~~  544 (603)
T 4feg_A          490 NDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAIAQHEPVLIDAVI  544 (603)
T ss_dssp             SCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence               1122345789999999999999997  78899999999973 468999999875

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=99.85  E-value=1.3e-21  Score=172.10  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=102.1

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc---
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL---  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~---  125 (176)
                      ..++|+||+++|.|+|++++.+     +++|+|++|||+|++  .+++|+++.++++|++++|+|||+|++.+..+.   
T Consensus       409 ~~~~g~~G~~l~~A~G~ala~~-----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~  481 (568)
T 2wvg_A          409 EMQWGHIGWSVPAAFGYAVGAP-----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPY  481 (568)
T ss_dssp             CTTTCCTTTHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGG
T ss_pred             CCCcchhhhHHHHHHHHHHhCC-----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCC
Confidence            3468999999999999999986     689999999999996  467799999999999999999999998865432   


Q ss_pred             -ccccHHHHHHHhhcCc---------eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -QHQTEVYRKRLDAFGF---------NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -~~~~~~~~~~a~a~G~---------~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                       ....+||.+++++||+         ++++|+  +.+++.++++++++..++|+|||+.+
T Consensus       482 ~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~~~gp~liev~~  539 (568)
T 2wvg_A          482 NNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALANTDGPTLIECFI  539 (568)
T ss_dssp             GCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred             cCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence             2234689999999999         899996  89999999999985338999999875

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=99.85  E-value=4.2e-22  Score=176.06  Aligned_cols=116  Identities=17%  Similarity=0.195  Sum_probs=101.1

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+     
T Consensus       421 ~g~g~mG~~l~~AiGaala~~-----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~  493 (589)
T 2pgn_A          421 MAEGILGCGFPMALGAQLAEP-----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFG  493 (589)
T ss_dssp             TTTCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHS
T ss_pred             CCcchhhhHHHHHHHHHHhCC-----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcC
Confidence            367999999999999999986     6899999999999974  5889999999999999999999999876432     


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          ......||.+++++||+++++|+  +++++.+++++|++ .++|+|||+.+
T Consensus       494 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~liev~~  545 (589)
T 2pgn_A          494 QNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID-SGKPALIEIPV  545 (589)
T ss_dssp             SCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH-HCSCEEEEEEC
T ss_pred             CCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh-CCCCEEEEEEe
Confidence                22235799999999999999997  78899999999974 58999999875

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=99.85  E-value=1.4e-21  Score=171.30  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=99.0

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL----  125 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~----  125 (176)
                      .+.|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++++++++|++++|+|||+|++....+.    
T Consensus       403 ~~~g~mG~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~  475 (549)
T 3eya_A          403 FNHGSMANAMPQALGAQATEP-----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGY  475 (549)
T ss_dssp             TTTCCTTCHHHHHHHHHHHST-----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC---------
T ss_pred             CCCchhhhHHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCC
Confidence            467999999999999999986     6899999999999864  57899999999999999999999987543221    


Q ss_pred             -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ....+||.+++++||+++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       476 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~  527 (549)
T 3eya_A          476 LTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAF-SIDGPVLVDVVV  527 (549)
T ss_dssp             ---CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHH-HSSSCEEEEEEB
T ss_pred             CCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 1234699999999999999996  8899999999997 468999999975

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=99.85  E-value=1.1e-21  Score=173.45  Aligned_cols=116  Identities=19%  Similarity=0.139  Sum_probs=99.7

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|++++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++.+..+     
T Consensus       423 g~~G~~G~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~  495 (590)
T 1ybh_A          423 GGLGAMGFGLPAAIGASVANP-----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYK  495 (590)
T ss_dssp             CSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHST
T ss_pred             CCcccccchHHHHHHHHHhCC-----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcC
Confidence            457999999999999999986     6899999999999974  5689999999999999999999999864321     


Q ss_pred             -----cc--c------ccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQ--H------QTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~--~------~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ..  .      ...||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       496 ~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~  556 (590)
T 1ybh_A          496 ANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML-DTPGPYLLDVIC  556 (590)
T ss_dssp             TCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH-HSSSCEEEEEEC
T ss_pred             CccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 11  1      13689999999999999996  8999999999997 468999999875

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=99.84  E-value=1e-21  Score=172.88  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=100.4

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|||++|||+|++  .+++|++|+++++|++++|+|||+|++.+...    
T Consensus       421 ~~~~g~mG~~l~~A~Gaala~~-----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~  493 (570)
T 2vbf_A          421 QPLWGSIGYTFPAALGSQIADK-----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQ  493 (570)
T ss_dssp             CTTTCCTTTHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred             CccchhhhhhHHHHHHHHHhCC-----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCC
Confidence            3478999999999999999986     689999999999996  46779999999999999999999999865322    


Q ss_pred             --cccccHHHHHHHhhcCce-----EEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 --LQHQTEVYRKRLDAFGFN-----AVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 --~~~~~~~~~~~a~a~G~~-----~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        .....+||.+++++||++     +++|+  +++++.++++++....++|+|||+.+
T Consensus       494 ~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~~~~p~liev~~  549 (570)
T 2vbf_A          494 SYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQADVNRMYWIELVL  549 (570)
T ss_dssp             GGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             CccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence              112346899999999998     88996  89999999998533568999999875

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=99.84  E-value=1.1e-21  Score=172.54  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=100.3

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|+|++.+     +++|||++|||+|+  +.+++|++|+++++|++++|+|||+|++....+     
T Consensus       419 ~~~g~mG~~l~~A~G~ala~~-----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~  491 (565)
T 2nxw_A          419 GYYAGMGFGVPAGIGAQCVSG-----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAF  491 (565)
T ss_dssp             TTTCCTTCHHHHHHHHHHHTT-----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGG
T ss_pred             CccccccccchHHHHHHHhCC-----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCC
Confidence            457999999999999999976     67999999999999  467889999999999999999999999864322     


Q ss_pred             cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcE-EEEeee
Q psy786          125 LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCV-WIQRGC  175 (176)
Q Consensus       125 ~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~-lI~~~~  175 (176)
                      ......||.+++++||+++++|+  +++++.++++++++ .++|. |||+.+
T Consensus       492 ~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~-~~gp~~liev~~  540 (565)
T 2nxw_A          492 NDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA-TRGRFQLIEAMI  540 (565)
T ss_dssp             GBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH-CCSSCEEEEEEC
T ss_pred             CcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh-cCCCeEEEEEEc
Confidence            12235689999999999999997  89999999999974 57887 999875

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=99.84  E-value=1.2e-21  Score=171.61  Aligned_cols=117  Identities=16%  Similarity=0.086  Sum_probs=100.7

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|++++.+     +++|||++|||+|++  .+++|+++.++++|++++|+|||+|++.....    
T Consensus       404 ~~~~g~mG~~l~~A~G~a~a~~-----~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~  476 (552)
T 1ovm_A          404 QPLWGSIGYTLAAAFGAQTACP-----NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ  476 (552)
T ss_dssp             CTTTCCTTHHHHHHHHHHHHCT-----TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred             chhhHhhhhHHHHHHHHHHhCC-----CCcEEEEECchHHHh--HHHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCC
Confidence            3468999999999999999976     689999999999986  56789999999999999999999999874321    


Q ss_pred             --cccccHHHHHHHhhcCc----eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 --LQHQTEVYRKRLDAFGF----NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 --~~~~~~~~~~~a~a~G~----~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        .....+||.+++++||+    ++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       477 ~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~  530 (552)
T 1ovm_A          477 RYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA-HHERLSLIEVML  530 (552)
T ss_dssp             GGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT-TCSSEEEEEEEC
T ss_pred             CcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence              12234689999999999    999997  8999999999986 468999999875

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=99.84  E-value=7.7e-22  Score=173.33  Aligned_cols=122  Identities=15%  Similarity=0.091  Sum_probs=101.2

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..++|+||+++|.|+|+|++.+. .+.+++|||++|||+|++  .+++|++|+++++|++++|+|||+|++.+...    
T Consensus       409 ~~~~g~mG~~l~~A~Gaala~~~-~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~  485 (563)
T 2vk8_A          409 QVLWGSIGFTTGATLGAAFAAEE-IDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKA  485 (563)
T ss_dssp             CTTTCCTTHHHHHHHHHHHHHHH-HCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTC
T ss_pred             ccchhhhhhHHHHHHHHHHhCcc-cCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCC
Confidence            45789999999999999999873 233478999999999996  46789999999999999999999999864321    


Q ss_pred             --cccccHHHHHHHhhcCce---EEEecCCCHHHHHHHHH-HHHhhCCCcEEEEeee
Q psy786          125 --LQHQTEVYRKRLDAFGFN---AVVVDGHDVEHLVKVSS-FKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 --~~~~~~~~~~~a~a~G~~---~~~vdG~d~~~l~~al~-~a~~~~~~P~lI~~~~  175 (176)
                        .....+||.+++++||++   +++|+  +++++.++++ ++++..++|+|||+++
T Consensus       486 ~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~~~~~p~liev~~  540 (563)
T 2vk8_A          486 QYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFNDNSKIRMIEVML  540 (563)
T ss_dssp             GGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTTSCSSEEEEEEEC
T ss_pred             CcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence              112346899999999999   99997  7999999999 7864334799999875

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=99.84  E-value=2.5e-21  Score=171.78  Aligned_cols=117  Identities=15%  Similarity=0.083  Sum_probs=99.4

Q ss_pred             cCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc-----
Q psy786           50 VGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS-----  124 (176)
Q Consensus        50 ~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~-----  124 (176)
                      .++|+||+++|.|+|+|++.+     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++....+     
T Consensus       439 g~~G~~G~~l~~AiGaala~~-----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~  511 (616)
T 2pan_A          439 GQAGPLGWTIPAALGVCAADP-----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDM  511 (616)
T ss_dssp             TTTCCTTCHHHHHHHHHHHCT-----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTC
T ss_pred             CCcccccchHHHHHHHHHhCC-----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcC
Confidence            467999999999999999986     6899999999999974  5689999999999999999999999754311     


Q ss_pred             ---------c--ccc----cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh---CCCcEEEEeee
Q psy786          125 ---------L--QHQ----TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       125 ---------~--~~~----~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~---~~~P~lI~~~~  175 (176)
                               .  ..+    ..||.+++++||+++++|+  +++++.+++++|+++   .++|+|||+.+
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~  578 (616)
T 2pan_A          512 DYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVIL  578 (616)
T ss_dssp             CCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEB
T ss_pred             CccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence                     0  111    2689999999999999996  789999999999751   58999999875

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=99.82  E-value=1.5e-20  Score=165.33  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCcc--c
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPTS--L  125 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~~--~  125 (176)
                      ..++|+||+++|.|+|++++ +     +++|+|++|||+|++  .+++|+|++++++|+++||+||++| .+...+.  .
T Consensus       422 ~g~~g~~G~~l~~AiGaala-~-----~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~  493 (568)
T 2c31_A          422 SGTWGVMGIGMGYCVAAAAV-T-----GKPVIAVEGDSAFGF--SGMELETICRYNLPVTVIIMNNGGIYKGNEADPQPG  493 (568)
T ss_dssp             STTTTCSSCHHHHHHHHHHH-H-----CSCEEEEEEHHHHHT--TGGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTT
T ss_pred             CCCCccccccHHHHHHHHhC-C-----CCcEEEEEcchHhhc--cHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcC
Confidence            45679999999999999998 5     679999999999996  4577999999999999999999985 4432220  0


Q ss_pred             -----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ....+||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       494 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~  545 (568)
T 2c31_A          494 VISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV-ASGKPCLINAMI  545 (568)
T ss_dssp             BCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH-HHTSCEEEEEEB
T ss_pred             CcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence                 1345799999999999999996  8999999999997 468999999975

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=99.81  E-value=2.4e-20  Score=163.87  Aligned_cols=116  Identities=18%  Similarity=0.128  Sum_probs=97.2

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC-ccccCc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL-GQSEPT----  123 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~-~~~~~~----  123 (176)
                      ...+|+||+++|.|+|++++ +     +++|+|++|||+|++.  +++|.+++++++|++++|+||++| ++....    
T Consensus       417 ~g~~g~~G~~l~~AiGaa~a-~-----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~  488 (564)
T 2q28_A          417 CGTWGVMGIGMGYAIGASVT-S-----GSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGA  488 (564)
T ss_dssp             STTTTCTTCHHHHHHHHHHH-H-----CSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSS
T ss_pred             CCCCCcccchHHHHHHHhhc-C-----CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhcc
Confidence            34679999999999999998 5     6799999999999873  467999999999999999999985 554321    


Q ss_pred             ---cc--ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          124 ---SL--QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       124 ---~~--~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                         ..  ..+.+||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       489 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~liev~~  542 (564)
T 2q28_A          489 GAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI-QSRKPTIINVVI  542 (564)
T ss_dssp             CCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH-HHTSCEEEEEEB
T ss_pred             CCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEe
Confidence               00  1124689999999999999996  8999999999997 468999999875

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=99.81  E-value=8.7e-21  Score=168.06  Aligned_cols=114  Identities=11%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-----
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-----  125 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-----  125 (176)
                      +.++||+++|.|+|++++ +     +++|||++|||+|+++  +++|++|+++++|++++|+|||+|++......     
T Consensus       453 G~~~ig~~l~~AiGaala-~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~  524 (604)
T 2x7j_A          453 GANGIDGVVSSAMGVCEG-T-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKT  524 (604)
T ss_dssp             TTCCSSSHHHHHHHHHHH-H-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHH
T ss_pred             CcCCcCcHHHHHHHHHhc-C-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccch
Confidence            467899999999999999 4     5789999999999974  46799999999999999999999998543211     


Q ss_pred             -------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                             ....+||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+++
T Consensus       525 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~  578 (604)
T 2x7j_A          525 HFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA-DKPGLHLIEIKT  578 (604)
T ss_dssp             HHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC-SSCCEEEEEEEC
T ss_pred             hhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                   0124689999999999999997  8999999999887 468999999975

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=99.80  E-value=3.8e-20  Score=162.56  Aligned_cols=113  Identities=16%  Similarity=0.074  Sum_probs=91.2

Q ss_pred             CCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc------
Q psy786           51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS------  124 (176)
Q Consensus        51 ~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~------  124 (176)
                      ..|++|+ +|.|+|++++ +     +++|||++|||+|++.  .++|+|++++++|+++||+||++|++.+..+      
T Consensus       415 ~~g~~G~-l~~A~Gaa~a-~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~  485 (556)
T 3hww_A          415 ASGIDGL-LSTAAGVQRA-S-----GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSER  485 (556)
T ss_dssp             SCCSSSH-HHHHHHHHHH-H-----CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC--------------
T ss_pred             ccccccH-HHHHHHHHhc-C-----CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhH
Confidence            5677788 9999999998 4     6789999999999864  4679999999999999999999998764321      


Q ss_pred             c----ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 L----QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ~----~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      .    ....+||.+++++||+++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~-~~~gp~liev~~  537 (556)
T 3hww_A          486 ERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW-RTPTTTVIEMVV  537 (556)
T ss_dssp             ---CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT-TSSSEEEEEEEC
T ss_pred             HHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence            1    1235789999999999999996  8999999999997 468999999975

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=99.78  E-value=1.4e-19  Score=159.68  Aligned_cols=110  Identities=17%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             ccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---c--cc--
Q psy786           54 SLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---S--LQ--  126 (176)
Q Consensus        54 ~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~--~~--  126 (176)
                      .+|+++|.|+|+|++       +++|||++|||+|++  ..++|+||+++++|++++|+||++|++....   +  ..  
T Consensus       437 G~~g~l~~AiGaa~~-------~~~vv~i~GDGsf~~--~~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~  507 (578)
T 3lq1_A          437 GIDGVVSSALGASVV-------FQPMFLLIGDLSFYH--DMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFE  507 (578)
T ss_dssp             CSSSHHHHHHHHTTT-------SSSEEEEEEHHHHHH--TGGGGHHHHHTTCCEEEEEECCC------------------
T ss_pred             ccccHHHHHHHHhcC-------CCCEEEEEchHHHHh--hHHHHHhhccCCCCeEEEEEECCcCccccccccccccchhh
Confidence            344579999999742       578999999999996  4567999999999999999999999987632   1  00  


Q ss_pred             -----cccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          127 -----HQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       127 -----~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ...+||.+++++||+++++|+  +++++.+++++|+ ..++|+|||+.+
T Consensus       508 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~liev~~  558 (578)
T 3lq1_A          508 SLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKAS-YHKGLDIIEVKT  558 (578)
T ss_dssp             -------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHT-TSSSEEEEEEC-
T ss_pred             hhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHH-hCCCCEEEEEEC
Confidence                 123589999999999999996  8999999999997 478999999875

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.54  E-value=1.3e-14  Score=137.12  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             cceEEEEECCC-ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------------cccHHHHHHHhh
Q psy786           76 SYRTYCLVGDG-ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------------HQTEVYRKRLDA  138 (176)
Q Consensus        76 ~~~vv~~~GDG-~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------------~~~~~~~~~a~a  138 (176)
                      +++||++.||| +|++|  .++|.++.++++|++++|+||+.|++.+.+...                ...+|+.++|++
T Consensus       953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A          953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp             CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred             CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence            47899999999 88976  356999999999999999999999998754321                123589999999


Q ss_pred             cCceEEE-ecC-CCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          139 FGFNAVV-VDG-HDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       139 ~G~~~~~-vdG-~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                      ||+.++. +.- .+++++.+++++|+ ..++|+||++.+
T Consensus      1031 ~G~~~va~~~v~~~~~~l~~al~eAl-~~~GP~lI~v~~ 1068 (1231)
T 2c42_A         1031 YGYVYVATVSMGYSKQQFLKVLKEAE-SFPGPSLVIAYA 1068 (1231)
T ss_dssp             TSSSEEEEECTTTCHHHHHHHHHHHH-HSSSCEEEEEEC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHHHH-hcCCCEEEEEee
Confidence            9999985 433 48999999999998 578999999864

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=96.13  E-value=0.041  Score=48.65  Aligned_cols=101  Identities=14%  Similarity=0.047  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHH-HHHHHhhhcCCCcEEEEEecCCCc-cccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIW-EALHFASYYKLDNLCVIFDINRLG-QSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~-eal~~a~~~~lp~liiV~~nn~~~-~~~~~~~~~~~~~~~~  134 (176)
                      ..++.|.|+|+.-      -++++.+.++...   ..+ +-++.++..++|+ +++..+.++. ..+++..  +..|+. 
T Consensus       372 ~~~~~a~G~A~~G------~rp~~~~~~~F~~---~a~dqi~~~~a~~~~pv-v~~~~~~g~~g~~G~tH~--~~~d~~-  438 (621)
T 2o1s_A          372 HAVTFAAGLAIGG------YKPIVAIYSTFLQ---RAYDQVLHDVAIQKLPV-LFAIDRAGIVGADGQTHQ--GAFDLS-  438 (621)
T ss_dssp             HHHHHHHHHHHTT------CEEEEEEETTGGG---GGHHHHHHTTTTTTCCC-EEEEESCBCCCTTCGGGC--BCSHHH-
T ss_pred             HHHHHHHHHHHCC------CEEEEEehHhHHH---HHHHHHHHHHHhcCCCE-EEEEECCccCCCCCCccC--chHHHH-
Confidence            3456788888853      3678888877542   344 3466788899995 4555666652 1222222  234555 


Q ss_pred             HHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          135 RLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       135 ~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      +++.. |+.++.-  .|+.|+...++.|++..++|++|-
T Consensus       439 ~~~~iP~l~v~~P--~d~~e~~~~l~~a~~~~~~Pv~i~  475 (621)
T 2o1s_A          439 YLRCIPEMVIMTP--SDENECRQMLYTGYHYNDGPSAVR  475 (621)
T ss_dssp             HTTTSTTCEEECC--SSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             HHhcCCCCEEEec--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence            34444 8988865  389999999999986558998874

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=95.42  E-value=0.13  Score=45.90  Aligned_cols=102  Identities=13%  Similarity=0.054  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~  135 (176)
                      .+++|.|+|+.-.     -++++......+.   ...+++..++..++|++++ +...+++.  .+++.  .+..+++-+
T Consensus       414 ~v~~a~GlA~~gG-----~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~-~t~~g~~~G~dG~tH--q~~edla~l  482 (669)
T 2r8o_A          414 MTAIANGISLHGG-----FLPYTSTFLMFVE---YARNAVRMAALMKQRQVMV-YTHDSIGLGEDGPTH--QPVEQVASL  482 (669)
T ss_dssp             HHHHHHHHHHHSS-----CEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEE-EECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEE-EeCCCcCcCCCCCcc--CCHHHHHHh
Confidence            3567888887521     2466666644433   3456788889999995544 55455543  33333  234555544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|..|+..+++.|++..++|++|-
T Consensus       483 r~iP~l~V~~P--ad~~E~~~~l~~a~~~~~~Pv~i~  517 (669)
T 2r8o_A          483 RVTPNMSTWRP--CDQVESAVAWKYGVERQDGPTALI  517 (669)
T ss_dssp             HTSTTCEEECC--SSHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             cCCCCCEEEec--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence            33348877754  489999999999996558998874

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=95.37  E-value=0.16  Score=44.95  Aligned_cols=101  Identities=11%  Similarity=0.012  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|++-.     -+++++..++...   ..++.+..++..++|+ +++.+..+++.  .++++  .+..+++-+
T Consensus       367 ~v~~a~G~A~~G~-----~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v-~~v~~~~g~~~G~dG~tH--~~~ed~a~l  435 (616)
T 3mos_A          367 MVSIAVGCATRNR-----TVPFCSTFAAFFT---RAFDQIRMAAISESNI-NLCGSHCGVSIGEDGPSQ--MALEDLAMF  435 (616)
T ss_dssp             HHHHHHHHHGGGC-----CEEEEEEEGGGGG---GGHHHHHHHHHTTCCE-EEEEESBSGGGCTTCGGG--CBSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CCEEEEehHHHHH---HHHHHHHHHHHhCCCe-EEEEECCCccccCCCCcc--cCHHHHHHh
Confidence            4567788887532     1456678888864   3567788888889994 55666666533  33322  233455544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|+.|+..+++.|+ ..++|++|.
T Consensus       436 ~~iP~l~V~~P--~d~~e~~~~l~~a~-~~~gp~~ir  469 (616)
T 3mos_A          436 RSVPTSTVFYP--SDGVATEKAVELAA-NTKGICFIR  469 (616)
T ss_dssp             HTSTTEEEECC--CSHHHHHHHHHHHH-TCCSEEEEE
T ss_pred             cCCCCCEEEec--CCHHHHHHHHHHHH-hcCCCEEEE
Confidence            44447776643  48999999999997 467897764

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=95.35  E-value=0.11  Score=46.42  Aligned_cols=102  Identities=9%  Similarity=-0.044  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.-.     -++++.+..+-..   ...+.+..++..++|++ ++....+.+  ..+++.  ++..+++-+
T Consensus       415 ~v~~a~GlA~~gG-----~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv-~~~t~~g~g~G~dG~TH--q~~ed~a~l  483 (663)
T 3kom_A          415 MAAIMNGLSLYGG-----IKPYGGTFLVFSD---YSRNAIRMSALMKQPVV-HVMSHDSIGLGEDGPTH--QPIEHVPSL  483 (663)
T ss_dssp             HHHHHHHHHHHSS-----CEEEEEEEGGGHH---HHHHHHHHHHHTTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CEEEEEehHHHHH---HHHHHHHHHHhcCCCEE-EEEeCCccccCCCCCCc--CCHHHHHHH
Confidence            4567889888522     2567776654432   34567878889999954 444444443  334433  233455544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|+.|+..+++.|+++.++|++|-
T Consensus       484 r~iPnl~V~~P--ad~~e~~~~l~~A~~~~~~Pv~ir  518 (663)
T 3kom_A          484 RLIPNLSVWRP--ADTIETMIAWKEAVKSKDTPSVMV  518 (663)
T ss_dssp             HTSTTCEEECC--CSHHHHHHHHHHHHHCSSCCEEEE
T ss_pred             hcCCCcEEEee--CCHHHHHHHHHHHHHhCCCCEEEE
Confidence            44448877744  389999999999986468998874

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=95.22  E-value=0.14  Score=45.64  Aligned_cols=102  Identities=11%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcc--ccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQ--SEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~--~~~~~~~~~~~~~~~~  135 (176)
                      .+++|.|+|+.-.     -++++....-.+.   ..++++..++..++|++ +++...+.+.  .+++.  .+..|++-+
T Consensus       409 ~~~~a~GlA~~Gg-----~~P~~~t~~~F~~---~~~~air~~a~~~lpvv-~~~t~~g~g~G~dG~tH--q~~edla~l  477 (651)
T 2e6k_A          409 MGAILNGLNLHGG-----YRAYGGTFLVFSD---YMRPAIRLAALMGVPTV-FVFTHDSIALGEDGPTH--QPVEHLMSL  477 (651)
T ss_dssp             HHHHHHHHHHHSS-----CEEEEEEEGGGGG---GSHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CEEEEEeHHHHHH---HHHHHHHHHHhcCCCEE-EEEECCccccCCCcCcc--ccHHHHHHh
Confidence            3457888887531     2466665532221   34567888899999964 5555566543  33333  334566544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.-  .|..|+..+++.|++..++|++|-
T Consensus       478 r~iP~l~V~~P--ad~~E~~~~l~~A~~~~~~Pv~i~  512 (651)
T 2e6k_A          478 RAMPNLFVIRP--ADAYETFYAWLVALRRKEGPTALV  512 (651)
T ss_dssp             HTSTTCEEECC--SSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred             cCCCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence            33348887754  389999999999996557898874

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=94.98  E-value=0.17  Score=41.40  Aligned_cols=99  Identities=8%  Similarity=-0.069  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHHh-h--------hcCCCcEEEEEecCCCccccCcccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHFA-S--------YYKLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~a-~--------~~~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ..++.|.|+|+.-      -++++.+ .+|.. +  ..++.+... +        ..++|++++ ......+-.+++.. 
T Consensus        73 ~~v~~a~G~A~~G------~rp~~~~~f~~F~-~--~a~dqi~~~~a~~~y~~~g~~~~pvv~~-~~~G~~g~~G~tHs-  141 (341)
T 2ozl_B           73 GFAGIAVGAAMAG------LRPICEFMTFNFS-M--QAIDQVINSAAKTYYMSGGLQPVPIVFR-GPNGASAGVAAQHS-  141 (341)
T ss_dssp             HHHHHHHHHHHTT------CEEEEECSSGGGG-G--GGHHHHHTTTTTHHHHTTSSCCCCCEEE-EECSCCSSCCGGGC-
T ss_pred             HHHHHHHHHHHCC------CEEEEEeccHHHH-H--HHHHHHHHHHHHHHhhccccCCCCEEEE-EcCcCCCCCCcchh-
Confidence            4466788888763      2455553 77776 3  355556543 3        278995544 44433232333331 


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      . ..+  .+++.. |+.++.-  .|+.|....++.|++ .++|++|-
T Consensus       142 ~-~~e--a~l~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i~  182 (341)
T 2ozl_B          142 Q-CFA--AWYGHCPGLKVVSP--WNSEDAKGLIKSAIR-DNNPVVVL  182 (341)
T ss_dssp             C-CCH--HHHHTSTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred             h-HHH--HHhccCCCCEEEEe--CCHHHHHHHHHHHHh-cCCCEEEE
Confidence            1 223  344444 8888765  489999999999985 58998864

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=94.82  E-value=0.035  Score=46.46  Aligned_cols=106  Identities=13%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..++.+|+|++++-.      +.++...|.|-..   ..+.|..++..++|+++++.+..+.+.........+ +.+..+
T Consensus        74 ~~a~~~a~Gaa~aG~------r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~s-d~~~~~  143 (395)
T 1yd7_A           74 IASIAAAIGASWAGA------KAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQG-DIMQAI  143 (395)
T ss_dssp             HHHHHHHHHHHHTTC------CEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC----------------------
T ss_pred             HHHHHHHHHHHHhCC------cEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchh-HHHHHH
Confidence            355677888888643      4667777877654   345677778889997766666544432111111110 111112


Q ss_pred             -Hh--hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEe
Q psy786          136 -LD--AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQR  173 (176)
Q Consensus       136 -a~--a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~  173 (176)
                       +.  .+|+.++...  +++|....+..|++   +.+.|+++..
T Consensus       144 ~~~~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~  185 (395)
T 1yd7_A          144 WGTHGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLT  185 (395)
T ss_dssp             -----CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred             hccCCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEc
Confidence             22  3568877664  89998888888874   3468988754

>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B

Probab=94.81  E-value=0.096  Score=42.70  Aligned_cols=98  Identities=9%  Similarity=-0.037  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASY--------YKLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~--------~~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ..++.|.|+|++-.      ++++.+ .+++. +  ..++.+. .++.        +++|++++ ..+.+ +..+++.. 
T Consensus        63 ~~~~~a~G~A~~G~------rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~pvv~~-~~~~g-~~~G~th~-  130 (338)
T 1qs0_B           63 GIVGTAVGMGAYGL------RPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAPLTLR-MPCGG-GIYGGQTH-  130 (338)
T ss_dssp             HHHHHHHHHHHHTC------EEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCCCEEE-EEECC-SSSCCSSS-
T ss_pred             HHHHHHHHHHhCCC------EEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCCEEEE-EeCCC-CCCCcccc-
Confidence            45667888888632      455544 77776 3  3556554 3442        35996554 44443 33333222 


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                       +..|+. ++++. |+.++.-  .|+.|....++.|++ .++|++|
T Consensus       131 -s~~d~~-~l~~iP~l~V~~P--sd~~e~~~~l~~A~~-~~~Pv~i  171 (338)
T 1qs0_B          131 -SQSPEA-MFTQVCGLRTVMP--SNPYDAKGLLIASIE-CDDPVIF  171 (338)
T ss_dssp             -SCCCHH-HHTTSTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEE
T ss_pred             -cccHHH-HHhcCCCCEEEee--CCHHHHHHHHHHHHh-cCCcEEE
Confidence             223443 44555 8988865  389999999999985 4899987

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=94.69  E-value=0.16  Score=45.35  Aligned_cols=102  Identities=9%  Similarity=-0.007  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a  136 (176)
                      +++|.|+|+.-.    .-++++.+....+.   ..++++..++..++|++++ ....+.+  ..+++.  .+..+++-+.
T Consensus       427 v~~a~GlA~~G~----~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~-~t~~g~g~G~dG~tH--q~~edla~lr  496 (675)
T 1itz_A          427 GAICNGIALHSP----GFVPYCATFFVFTD---YMRGAMRISALSEAGVIYV-MTHDSIGLGEDGPTH--QPIEHLVSFR  496 (675)
T ss_dssp             HHHHHHHHTTCT----TCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEE-EECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred             HHHHHHHHhcCC----CCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEE-EECCccccCCCCCCc--CcHHHHHHhc
Confidence            457778876530    13567776644442   3567788899999995544 4444444  333333  2345555443


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .--|+.++.=  .|..|+..+++.|++..++|++|-
T Consensus       497 ~iP~l~V~~P--ad~~e~~~~l~~a~~~~~~Pv~i~  530 (675)
T 1itz_A          497 AMPNILMLRP--ADGNETAGAYKVAVLNRKRPSILA  530 (675)
T ss_dssp             SSSSCEEECC--CSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             cCCCeEEEEC--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence            3347776643  489999999999996558998873

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=94.56  E-value=0.28  Score=43.98  Aligned_cols=102  Identities=13%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.--     -++++..+.--+.   ....++..++..++|+ ++++...+++  ..+++.  .+..+++-+
T Consensus       439 mv~~A~GlA~~gG-----~~P~~~tf~~Fs~---f~~~air~~al~~lpV-v~v~~~~gigvG~dG~TH--q~ied~a~l  507 (690)
T 3m49_A          439 MGAAMNGIALHGG-----LKTYGGTFFVFSD---YLRPAIRLAALMQLPV-TYVFTHDSIAVGEDGPTH--EPIEQLAAL  507 (690)
T ss_dssp             HHHHHHHHHHHSS-----CEEEEEEEGGGGG---GGHHHHHHHHHHTCCC-EEEEECCSGGGCTTCGGG--CCSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CEEEEEecHHHHH---HHHHHHHHHHhcCCCc-EEEEECCCcCCCCCCCcc--CCHHHHHHH
Confidence            3567888888521     2456654322221   1234577788899995 5556655553  344433  233455543


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|+.|+..+++.|++..++|++|-
T Consensus       508 r~iPnl~V~~P--ad~~E~~~~l~~Ai~~~~~Pv~ir  542 (690)
T 3m49_A          508 RAMPNVSVIRP--ADGNESVAAWRLALESTNKPTALV  542 (690)
T ss_dssp             HTSTTCEEECC--SSHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             hcCCCCEEEee--CCHHHHHHHHHHHHHcCCCCEEEE
Confidence            33348887743  389999999999986557898874

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=94.48  E-value=0.13  Score=45.50  Aligned_cols=100  Identities=18%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHH-HHHHHhhhcCCCcEEEEEecCCC-ccccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIW-EALHFASYYKLDNLCVIFDINRL-GQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~-eal~~a~~~~lp~liiV~~nn~~-~~~~~~~~~~~~~~~~~  134 (176)
                      ..++.|.|+|++-      -++++.+..+..  + ..+ +-++.++..++|++ ++..+.++ +-.+++...  ..|++ 
T Consensus       375 ~~~~~a~G~A~~G------~rp~~~~~~~F~--~-~a~dqi~~~~a~~~~pvv-~~~~~~g~~g~dG~tH~~--~~d~a-  441 (629)
T 2o1x_A          375 VAVTTAAGMALQG------MRPVVAIYSTFL--Q-RAYDQVLHDVAIEHLNVT-FCIDRAGIVGADGATHNG--VFDLS-  441 (629)
T ss_dssp             HHHHHHHHHHHTT------CEEEEEEEHHHH--G-GGHHHHHHTTTTTTCCCE-EEEESBBCCCTTCTTTCB--CSHHH-
T ss_pred             HHHHHHHHHHHcC------CEEEEEecHHHH--H-HHHHHHHHHHhhcCCCEE-EEEECCccCCCCCcccCc--cHHHH-
Confidence            3455788888753      356777776643  2 334 33567888999954 44565554 222332222  24544 


Q ss_pred             HHhh-cCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          135 RLDA-FGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       135 ~a~a-~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      +++. -|+.++.-  .|+.|+...++.|++ .++|++|-
T Consensus       442 ~~r~iP~l~v~~P--~d~~e~~~~~~~a~~-~~~Pv~i~  477 (629)
T 2o1x_A          442 FLRSIPGVRIGLP--KDAAELRGMLKYAQT-HDGPFAIR  477 (629)
T ss_dssp             HTTTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred             HHHccCCcEEEec--CCHHHHHHHHHHHHh-CCCCEEEE
Confidence            4444 48887755  389999999999985 57898874

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=94.48  E-value=0.19  Score=44.89  Aligned_cols=101  Identities=12%  Similarity=0.033  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhchhcCCCcc-eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASY-RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~-~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~  135 (176)
                      ++.|.|+|+.-.     -+ +++....+-+.   ..++++..++..++|+++ ++...+.+  ..+++.  .+..+++-+
T Consensus       422 vg~a~GlA~~Gg-----~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~-v~t~~g~g~G~dG~tH--q~~edla~l  490 (680)
T 1gpu_A          422 GAIMNGISAFGA-----NYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIW-VATHDSIGVGEDGPTH--QPIETLAHF  490 (680)
T ss_dssp             HHHHHHHHHHCT-----TCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEE-EEECCSGGGCTTCTTT--CCSSHHHHH
T ss_pred             HHHHHHHHhcCC-----CceEEEeehHHHHH---HHHHHHHHHHhcCCCEEE-EEeCCccccCCCCCcc--CCHHHHHHh
Confidence            457888887521     24 56655533322   346678888899999554 45444544  334443  234555544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|+.|+..+++.|++..++|++|-
T Consensus       491 r~iP~l~V~~P--ad~~e~~~~l~~A~~~~~~Pv~i~  525 (680)
T 1gpu_A          491 RSLPNIQVWRP--ADGNEVSAAYKNSLESKHTPSIIA  525 (680)
T ss_dssp             HTSSSCEEECC--CSHHHHHHHHHHHHHCSSCCEEEE
T ss_pred             cCCCCCEEEec--CCHHHHHHHHHHHHHhCCCcEEEE
Confidence            43348877643  489999999999996558998874

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=94.29  E-value=0.28  Score=43.59  Aligned_cols=101  Identities=18%  Similarity=0.053  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~  135 (176)
                      .++.|.|+|+.--     -++++.+..+  |.+ ...+.+..++..++|+ +++....+.+  ..+++.  .+..+++-+
T Consensus       394 ~v~~a~GlA~~gG-----~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv-~~~~t~~g~g~G~dG~TH--q~~ed~a~l  462 (632)
T 3l84_A          394 MAAINNAFARYGI-----FLPFSATFFI--FSE-YLKPAARIAALMKIKH-FFIFTHDSIGVGEDGPTH--QPIEQLSTF  462 (632)
T ss_dssp             HHHHHHHHHHHSS-----CEEEEEEEGG--GHH-HHHHHHHHHHHHTCCC-EEEEECCSGGGCTTCGGG--SCSSHHHHH
T ss_pred             HHHHHHHHHHcCC-----CEEEEEecHH--HHH-HHHHHHHHHhccCCCE-EEEEECCCcCCCCCCCCC--CCHhHHHHH
Confidence            3567888887621     2467776543  332 3566777788899995 4555444443  334433  233455544


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      ..--|+.++.=  .|+.|+..+++.|++ .++|++|-
T Consensus       463 r~iP~l~V~~P--~d~~e~~~~l~~A~~-~~~Pv~ir  496 (632)
T 3l84_A          463 RAMPNFLTFRP--ADGVENVKAWQIALN-ADIPSAFV  496 (632)
T ss_dssp             HHSSSCEEECC--SSHHHHHHHHHHHHH-CSSCEEEE
T ss_pred             hcCCCCEEEec--CCHHHHHHHHHHHHh-CCCCEEEE
Confidence            33348887754  389999999999985 78998774

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=94.27  E-value=0.37  Score=43.02  Aligned_cols=101  Identities=9%  Similarity=-0.013  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~~a  136 (176)
                      +++|.|+|+.-.     -++++.+...-+.   ...+++..++..++|++ ++....+++  ..+++.  .+..+++-+.
T Consensus       415 ~~~a~GlA~~GG-----~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv-~~~t~~g~g~G~dG~tH--q~~edla~lr  483 (673)
T 1r9j_A          415 CAILNGLDAHDG-----IIPFGGTFLNFIG---YALGAVRLAAISHHRVI-YVATHDSIGVGEDGPTH--QPVELVAALR  483 (673)
T ss_dssp             HHHHHHHHHHSS-----CEEEEEEEGGGGG---GGHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred             HHHHHHHHhcCC-----CEEEEEehHHHHH---HHHHHHHHHHhcCCCEE-EEEECCccCcCCCCccc--CCHHHHHHHc
Confidence            457788877521     2466666544332   35667888899999954 445444444  334433  2344555443


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .--|+.++.=  .|..|+..+++.|++..++|++|-
T Consensus       484 ~iP~l~V~~P--ad~~e~~~~l~~a~~~~~~Pv~i~  517 (673)
T 1r9j_A          484 AMPNLQVIRP--SDQTETSGAWAVALSSIHTPTVLC  517 (673)
T ss_dssp             HSTTCEEECC--SSHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEeC--CCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3348776643  489999999999996558998874

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=94.23  E-value=0.1  Score=45.60  Aligned_cols=105  Identities=15%  Similarity=0.052  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a  136 (176)
                      .+.-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-....+ +.  ......|...++
T Consensus        61 ~Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~-g~--~~~Q~~d~~~~~  130 (590)
T 1ybh_A           61 GGVFAAEGYARSSGK----PGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMI-GT--DAFQETPIVEVT  130 (590)
T ss_dssp             HHHHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGT-TT--TCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCC----CEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCcccc-CC--CcccccCHHHHH
Confidence            334477888876531    23455555666665   345788999999996666555332221 11  111123667888


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      +.+--..+++.  +++++.+.+++|+..    ..||+.|++
T Consensus       131 ~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~i  169 (590)
T 1ybh_A          131 RSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDV  169 (590)
T ss_dssp             GGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             HHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence            88866677775  777787777777752    248999876

>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*

Probab=93.98  E-value=0.27  Score=39.75  Aligned_cols=98  Identities=10%  Similarity=-0.041  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASY--------YKLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~--------~~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ..++.|.|+|++-      -++++.+ .++.. +  ..++.+. .++.        .++|++++ .+ .++.........
T Consensus        61 ~~v~~a~G~A~~G------~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~-~~-~g~~~~~g~~hs  129 (324)
T 1w85_B           61 GIGGLAIGLALQG------FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIR-SP-FGGGVHTPELHS  129 (324)
T ss_dssp             HHHHHHHHHHHTT------CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEE-EE-ECSSSCCCTTSS
T ss_pred             HHHHHHHHHHhCC------CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEE-Ee-ccCCCCCCCccc
Confidence            4566788888763      2445544 77765 3  3455564 2443        78995444 44 344332221111


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                        ..+. .+.++. |+.++.-  .|+.|....++.|++ .++|++|
T Consensus       130 --~~~~-a~~~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i  169 (324)
T 1w85_B          130 --DSLE-GLVAQQPGLKVVIP--STPYDAKGLLISAIR-DNDPVIF  169 (324)
T ss_dssp             --CCCH-HHHTTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEE
T ss_pred             --ccHH-HHHccCCCCEEEee--CCHHHHHHHHHHHHH-cCCCEEE
Confidence              1223 455554 7777754  489999999999984 7799887

>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2

Probab=93.94  E-value=0.38  Score=39.77  Aligned_cols=98  Identities=13%  Similarity=-0.062  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHH-hhhc--------CCCcEEEEEecCCCccccCcccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHF-ASYY--------KLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~-a~~~--------~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ..++.|.|+|+.-      -++++.+ .+|...   ..++.+.. ++..        ++|++++ ....+..-...   .
T Consensus       109 ~~v~~a~G~A~~G------~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~-~~~gg~~g~g~---~  175 (369)
T 1ik6_A          109 GILGFAMGMAMAG------LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVR-TPVGSGTRGGL---Y  175 (369)
T ss_dssp             HHHHHHHHHHHTT------CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEE-EEECC----------
T ss_pred             HHHHHHHHHHHCC------CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEE-EeCCCCCCCCc---c
Confidence            3466788888753      2456654 888663   34454544 4433        9995544 44444221221   1


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      ....+ ..++++. |+.++.-  .|+.|....++.|++ .++|++|
T Consensus       176 hs~~~-~a~l~~iPnl~V~~P--sd~~e~~~ll~~A~~-~~~Pv~i  217 (369)
T 1ik6_A          176 HSNSP-EAIFVHTPGLVVVMP--STPYNAKGLLKAAIR-GDDPVVF  217 (369)
T ss_dssp             ----H-HHHHHTCTTCEEECC--CSHHHHHHHHHHHHH-SSSCEEE
T ss_pred             ccccH-HHHHcCCCCcEEEec--CCHHHHHHHHHHHHh-CCCCEEE
Confidence            11223 3455555 8888765  489999999999985 7899887

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=93.61  E-value=0.22  Score=43.32  Aligned_cols=104  Identities=14%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.|.+...    -..+++..|=|..+   ..-++..|..-++|+|++.-+-....+..   ......|...+++
T Consensus        60 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~---~~~Q~~d~~~~~~  129 (566)
T 1ozh_A           60 AAFMAAAVGRITGK----AGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAK---QVHQSMDTVAMFS  129 (566)
T ss_dssp             HHHHHHHHHHHHSS----CEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHHHHG
T ss_pred             HHHHHHHHHHHHCC----CEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCC---CcccccCHHHHHH
Confidence            34467888776531    12344444666666   34578899999999666655543322221   1111246678888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      .+--..+++.  +++++.+.+++|+.    ...||+.|++
T Consensus       130 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~i  167 (566)
T 1ozh_A          130 PVTKYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSL  167 (566)
T ss_dssp             GGCSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             HHhheEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence            8877677774  66666555555543    2358999986

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=93.49  E-value=0.24  Score=43.00  Aligned_cols=104  Identities=14%  Similarity=-0.013  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccccc-HHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT-EVYRKRL  136 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~-~~~~~~a  136 (176)
                      +.-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-....+.. ..  ... .|...++
T Consensus        53 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~--~Q~~~d~~~~~  122 (563)
T 2uz1_A           53 AGHAAEGYARAGAK----LGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDET-NT--LQAGIDQVAMA  122 (563)
T ss_dssp             HHHHHHHHHHHHTS----CEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTS-CC--TTCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCC----CEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCc-hh--hhhhccHHHHh
Confidence            34467788776531    12344444556665   34578889999999666655533322211 11  112 4667888


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +.+--..+++.  +++++.+.+++|+.    ...||+.|++
T Consensus       123 ~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~i  161 (563)
T 2uz1_A          123 APITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDL  161 (563)
T ss_dssp             GGGCSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             hhhhceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence            88876677774  66655555555543    2359999986

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=93.44  E-value=0.42  Score=41.45  Aligned_cols=106  Identities=12%  Similarity=-0.008  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---cc--ccccHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---SL--QHQTEVY  132 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~~--~~~~~~~  132 (176)
                      +.-+|.|.|.+..     -..+++..|=|..+   ..-++..|...++|+|++.-+-.........   +.  .....|.
T Consensus        53 Aa~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~  124 (568)
T 2wvg_A           53 CGFSAEGYARAKG-----AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQ  124 (568)
T ss_dssp             HHHHHHHHHHHHS-----CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHH
T ss_pred             HHHHHHHHHHhhC-----CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHH
Confidence            3446777776542     23455556777665   4557888999999966665553332221110   00  0011367


Q ss_pred             HHHHhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786          133 RKRLDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       133 ~~~a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~  174 (176)
                      .++++.+--..+++.  ++++    +.+|++.|... ++|+.|++-
T Consensus       125 ~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~-~GPV~l~iP  167 (568)
T 2wvg_A          125 LEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALRE-KKPVYLEIA  167 (568)
T ss_dssp             HHHHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred             HHHHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence            888888866677774  5544    55555555533 599999863

>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...

Probab=93.29  E-value=0.32  Score=39.72  Aligned_cols=98  Identities=9%  Similarity=-0.024  Sum_probs=58.7

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHH-Hhhhc--------CC-CcEEEEEecCCCccccCccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALH-FASYY--------KL-DNLCVIFDINRLGQSEPTSL  125 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~-~a~~~--------~l-p~liiV~~nn~~~~~~~~~~  125 (176)
                      ..++.|.|+|++-      -++++.+ .+++..   ..++.+. .++.+        ++ |++ ++....+ ...+++. 
T Consensus        78 ~~v~~a~G~A~~G------~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv-~~~~~~g-~~~G~th-  145 (342)
T 2bfd_B           78 GIVGFGIGIAVTG------ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLT-IRSPWGC-VGHGALY-  145 (342)
T ss_dssp             HHHHHHHHHHHTT------CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEE-EEEEESC-CSSCGGG-
T ss_pred             HHHHHHHHHHHCC------CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEE-EEEecCC-CCCCcch-
Confidence            4466788888863      2455543 777743   3555554 44433        44 854 4455433 2233222 


Q ss_pred             ccccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          126 QHQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       126 ~~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                       .+..|+. +.++. |+.++.-  .|+.|....++.|++ .++|++|
T Consensus       146 -~~~~d~~-~l~~iP~l~V~~P--sd~~e~~~~l~~a~~-~~~Pv~i  187 (342)
T 2bfd_B          146 -HSQSPEA-FFAHCPGIKVVIP--RSPFQAKGLLLSCIE-DKNPCIF  187 (342)
T ss_dssp             -SSCCCHH-HHHTSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEE
T ss_pred             -hhHhHHH-HHhcCCCcEEEee--CCHHHHHHHHHHHHh-cCCcEEE
Confidence             2223443 34555 8887755  489999999999985 4899887

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=93.22  E-value=0.2  Score=43.54  Aligned_cols=105  Identities=10%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-....+. .. ......|...+++
T Consensus        60 Aa~~A~Gyar~tg~----p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~-~~-~~~Q~~d~~~~~~  130 (573)
T 2iht_A           60 AGVAADVLARITGR----PQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIF-PN-DTHQCLDSVAIVA  130 (573)
T ss_dssp             HHHHHHHHHHHHCS----CEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCC-TT-TSTTCCCHHHHHG
T ss_pred             HHHHHHHHHHHHCC----CEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccC-Cc-CccccCCHHHHHH
Confidence            34477788776531    12344444555554   4557889999999966665553332222 10 1111236778888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      .+--...++.  +++++.+.+++|++    ...||+.|++
T Consensus       131 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i  168 (573)
T 2iht_A          131 PMSKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISL  168 (573)
T ss_dssp             GGSSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred             hHhhEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            8876677774  66666555555553    2348999986

>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*

Probab=93.17  E-value=0.6  Score=37.65  Aligned_cols=98  Identities=12%  Similarity=-0.004  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHH-hhh--------cCCCcEEEEEecCCCccccCcccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHF-ASY--------YKLDNLCVIFDINRLGQSEPTSLQ  126 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~-a~~--------~~lp~liiV~~nn~~~~~~~~~~~  126 (176)
                      ..++.|.|+|++-.      ++++.+ .++.. +  ..++.+.. ++.        .++|++++ .. .++........+
T Consensus        62 ~~v~~a~G~A~~G~------~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~-~~-~g~~~~~g~~hs  130 (324)
T 1umd_B           62 AIVGAALGMAAHGL------RPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVR-MP-SGGGVRGGHHHS  130 (324)
T ss_dssp             HHHHHHHHHHHHTC------EEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEE-EE-ECSSSSCGGGSS
T ss_pred             HHHHHHHHHHHCCC------EEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEE-Ec-CCCCCCCCCccc
Confidence            34667888888632      455544 77765 3  35565643 343        68995544 44 344332222111


Q ss_pred             cccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          127 HQTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       127 ~~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                        ..+. .+++.. |+.++.-  .|+.|....++.|++ .++|++|
T Consensus       131 --~~~~-a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~-~~~Pv~i  170 (324)
T 1umd_B          131 --QSPE-AHFVHTAGLKVVAV--STPYDAKGLLKAAIR-DEDPVVF  170 (324)
T ss_dssp             --CCCH-HHHHTSTTCEEEEC--CSHHHHHHHHHHHHH-CSSCEEE
T ss_pred             --hhHH-HHHhcCCCCEEEEe--CCHHHHHHHHHHHHh-cCCCEEE
Confidence              2233 455555 8887765  489999999999984 6799887

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=93.14  E-value=0.28  Score=43.77  Aligned_cols=105  Identities=13%  Similarity=-0.028  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.|.+...    -..++|..|=|.++   ..-++..|..-++|+|++.-+-....+..   ..+...|...+++
T Consensus       132 Aa~aAdGyAr~tGk----pgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~---~a~Q~~Dq~~i~~  201 (677)
T 1t9b_A          132 AGHMAEGYARASGK----PGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT---DAFQEADVVGISR  201 (677)
T ss_dssp             HHHHHHHHHHHHSS----CEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS---CCTTCCCHHHHTG
T ss_pred             HHHHHHHHHHHHCC----CEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC---CCccccCHHHHhh
Confidence            34467888876531    23455555666665   34578899999999666655533322221   1111235667888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEee
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQRG  174 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~~  174 (176)
                      .+--..+++.  +++++.+.+++|+..    ..||++|++-
T Consensus       202 ~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP  240 (677)
T 1t9b_A          202 SCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP  240 (677)
T ss_dssp             GGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             hheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence            8866666774  677777777777642    3589999863

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=93.09  E-value=0.25  Score=42.73  Aligned_cols=102  Identities=12%  Similarity=-0.027  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|.++   ..-++..|..-++|+|++.-+-....+ +.  ......|..++++.
T Consensus        54 a~~A~GyAr~tg~----~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~-~~--~~~Q~~d~~~~~~~  123 (549)
T 3eya_A           54 AFAAGAEAQLSGE----LAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEI-GS--GYFQETHPQELFRE  123 (549)
T ss_dssp             HHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGT-TS--CCTTCCCHHHHTST
T ss_pred             HHHHHHHHHHhCC----CEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhc-CC--CCCCccCHHHHHhh
Confidence            3467787776531    23445555777776   345799999999996666544322111 11  11112356778888


Q ss_pred             cCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~  173 (176)
                      +--...++.  ++++    +.+|++.|.. .++|+.|++
T Consensus       124 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~-~~GPV~l~i  159 (549)
T 3eya_A          124 CSHYCELVS--SPEQIPQVLAIAMRKAVL-NRGVSVVVL  159 (549)
T ss_dssp             TCSEEEECC--SGGGHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             hhheEEEeC--CHHHHHHHHHHHHHHHhh-CCCCEEEEe
Confidence            766666774  5544    5555555543 579999986

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=93.03  E-value=0.43  Score=41.33  Aligned_cols=109  Identities=13%  Similarity=-0.002  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc---c-c-ccccHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT---S-L-QHQTEV  131 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~---~-~-~~~~~~  131 (176)
                      .+.-+|.|.|.+..     -..+++..|=|..+   ..-++..|...++|+|++.-+-.........   + . .....|
T Consensus        52 ~Aa~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d  123 (566)
T 2vbi_A           52 NCGFSAEGYARSNG-----AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY  123 (566)
T ss_dssp             HHHHHHHHHHHHHS-----CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTH
T ss_pred             HHHHHHHHHHhhcC-----CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHH
Confidence            33446778776541     23444455777765   4557888999999966665553332221110   0 0 011236


Q ss_pred             HHHHHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          132 YRKRLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       132 ~~~~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ...+++.+--..+++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus       124 ~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP  167 (566)
T 2vbi_A          124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRE-RKPAYLDIA  167 (566)
T ss_dssp             HHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred             HHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence            7888888866666774 222 34566677666543 599999863

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=92.88  E-value=0.26  Score=42.85  Aligned_cols=108  Identities=11%  Similarity=-0.072  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc--cccccH-HHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS--LQHQTE-VYRKR  135 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~--~~~~~~-~~~~~  135 (176)
                      .-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-....+.....  .+.... +...+
T Consensus        72 a~~A~GyAr~tgk----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~  144 (565)
T 2nxw_A           72 GFAADAAARYSST----LGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQV  144 (565)
T ss_dssp             HHHHHHHHHHHTS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHH
T ss_pred             HHHHHHHHHHhCC----CeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHH
Confidence            3467788776531    12344444666665   34578899999999766665533322211100  000112 36678


Q ss_pred             HhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          136 LDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++.+--..+++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus       145 ~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP  184 (565)
T 2nxw_A          145 FKEITVAQARLDDPAKAPAEIARVLGAARAQ-SRPVYLEIP  184 (565)
T ss_dssp             HTTSCSCEEECCCTTTHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred             HHhhheEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEECC
Confidence            888866666664 122 34566666666543 699999863

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=92.88  E-value=0.37  Score=42.03  Aligned_cols=103  Identities=10%  Similarity=0.090  Sum_probs=61.0

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|..+   ..-++..|..-++|+|++.-+-....+......+  ..|... ++.
T Consensus        56 a~~A~GyAr~tg~----p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~  125 (589)
T 2pgn_A           56 AWMVNGYNYVKDR----SAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTP  125 (589)
T ss_dssp             HHHHHHHHHHHTS----CCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTT
T ss_pred             HHHHHHHHHHHCC----CEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccc
Confidence            3467788776531    24677788888887   3457999999999966665554332222110111  123334 555


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +--..+++.  +++++.+.+++|+.    ...||+.|++
T Consensus       126 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i  162 (589)
T 2pgn_A          126 IARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDI  162 (589)
T ss_dssp             TSSEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cEEEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEe
Confidence            555556664  56555555555543    2348999986

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=92.86  E-value=0.65  Score=41.80  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~a  136 (176)
                      ++.|.|+|+...     -++++.+..  .|.+ ...+.+..++..++|++ ++....+.  +..+++.  .+..+++-+.
T Consensus       461 v~~AaGlA~~~G-----~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~-~v~thdg~gvG~dG~TH--q~~ed~a~lr  529 (711)
T 3uk1_A          461 SAAINGLVLHGG-----YKPFGGTFL--TFSD-YSRNALRVAALMKVPSI-FVFTHDSIGLGEDGPTH--QSVEHVASLR  529 (711)
T ss_dssp             HHHHHHHHHHSS-----CEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--CCSSHHHHHH
T ss_pred             HHHHHHHHHcCC-----CEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEE-EEEECCCcCcCCCCCcc--CChhHHHHHh
Confidence            567889887422     246666653  3432 34566777788999954 44544444  4444443  2334555433


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .--|+.++.=  .|+.|+..+++.|++ .++|++|-
T Consensus       530 ~iPnl~V~~P--ad~~E~~~~l~~Ai~-~~~Pv~ir  562 (711)
T 3uk1_A          530 LIPNLDVWRP--ADTVETAVAWTYAVA-HQHPSCLI  562 (711)
T ss_dssp             TSTTCEEECC--SSHHHHHHHHHHHHH-SSSCEEEE
T ss_pred             cCCCCEEEec--CCHHHHHHHHHHHHh-cCCCEEEE
Confidence            3348887754  389999999999985 78998874

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=92.78  E-value=0.9  Score=40.81  Aligned_cols=101  Identities=14%  Similarity=0.138  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCC--ccccCcccccccHHHHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRL--GQSEPTSLQHQTEVYRKRL  136 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~--~~~~~~~~~~~~~~~~~~a  136 (176)
                      ++.|.|+|+.-.     -++++..+..  |.. ....++..++..++|++ ++....++  +..+++.  ++..+++-+.
T Consensus       445 v~~A~GlA~~gG-----~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv-~v~thdg~gvG~dG~TH--q~ied~a~lr  513 (700)
T 3rim_A          445 GAILSGIVLHGP-----TRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTI-YVWTHDSIGLGEDGPTH--QPIEHLSALR  513 (700)
T ss_dssp             HHHHHHHHHHSS-----CEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTT--SCSSHHHHHH
T ss_pred             HHHHHHHHHcCC-----CEEEEEecHH--HHH-HHHHHHHHhcCCCCCEE-EEEeCCCcccCCCCCcc--CChhHHHHHh
Confidence            567788888621     2456553322  211 23345777888999954 55543444  4444443  3345665444


Q ss_pred             hhcCceEEEecCCCHHHHHHHHHHHHhhCC--CcEEEE
Q psy786          137 DAFGFNAVVVDGHDVEHLVKVSSFKLQKAI--GCVWIQ  172 (176)
Q Consensus       137 ~a~G~~~~~vdG~d~~~l~~al~~a~~~~~--~P~lI~  172 (176)
                      .--|+.++.=  .|+.|+..+++.|++..+  +|++|-
T Consensus       514 ~iPnl~V~~P--ad~~e~~~~l~~Ai~~~~~~~Pv~ir  549 (700)
T 3rim_A          514 AIPRLSVVRP--ADANETAYAWRTILARRNGSGPVGLI  549 (700)
T ss_dssp             TSTTCEEECC--SSHHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred             cCCCCEEEeC--CCHHHHHHHHHHHHHccCCCCCEEEE
Confidence            4448887743  389999999999986555  798874

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=92.52  E-value=0.35  Score=42.43  Aligned_cols=105  Identities=16%  Similarity=0.056  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|.|.|.+..   +.-..+++..|=|..+   ..-++..|..-+.|+|++.-+.....+. .  ......|..++++
T Consensus        77 Aa~~A~GyAr~tg---g~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~-~--~~~Q~~d~~~~~~  147 (616)
T 2pan_A           77 ASHMAEGYTRATA---GNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLH-K--EDFQAVDIEAIAK  147 (616)
T ss_dssp             HHHHHHHHHHHST---TCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTT-T--TCTTCCCHHHHHG
T ss_pred             HHHHHHHHHHhcC---CCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccC-c--ccccccCHHHHHH
Confidence            3446788887751   0112344555666665   3457889999999976666554332221 1  1111245678888


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHhh----CCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQK----AIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~~----~~~P~lI~~  173 (176)
                      .+--..+++.  +++++...+++|+..    .+||+.|++
T Consensus       148 ~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~i  185 (616)
T 2pan_A          148 PVSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDL  185 (616)
T ss_dssp             GGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             HHHHhhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence            8876667774  666777777766642    258999986

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=92.32  E-value=0.18  Score=43.70  Aligned_cols=105  Identities=11%  Similarity=0.000  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-.. ...+.....+...|...+++.
T Consensus        58 a~~A~Gyar~tg~----pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~-~~~~~~~~~~Q~~dq~~~~~~  129 (564)
T 2q28_A           58 GYAAAASGFLTQK----PGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDR-AIVDLQQGDYEELDQMNAAKP  129 (564)
T ss_dssp             HHHHHHHHHHHSS----CEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCH-HHHHTTSCCTTCCCHHHHHGG
T ss_pred             HHHHHHHHHHhCC----CEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCc-cccCCCCCccccccHHHHHHH
Confidence            3467787776531    12444445666555   455788899999996666554322 211100011112356678888


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +--..+++.  +++++.+.+++|+.    ..+||+.|++
T Consensus       130 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i  166 (564)
T 2q28_A          130 YAKAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDL  166 (564)
T ss_dssp             GSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             hhheeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEc
Confidence            876677774  55555444444443    2468999986

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=91.72  E-value=0.2  Score=43.54  Aligned_cols=105  Identities=8%  Similarity=-0.066  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|..+   ..-++..|..-++|+|++.-+-.. ...+.........|...+++.
T Consensus        60 a~~A~GyAr~tg~----pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~-~~~~~~~~~~Q~~dq~~~~~~  131 (568)
T 2c31_A           60 GYAASIAGYIEGK----PGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSER-EIVDLQQGDYEEMDQMNVARP  131 (568)
T ss_dssp             HHHHHHHHHHHSS----CEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCH-HHHHTTCCCTTCCCHHHHSGG
T ss_pred             HHHHHHHHHHhCC----CEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCc-cccCCCCCcccccCHHHHHHh
Confidence            3467787776431    12444445556555   455788999999996666555322 211100011112356677888


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +--..+++.  +++++...+++|+.    ..+||+.|++
T Consensus       132 ~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~i  168 (568)
T 2c31_A          132 HCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDL  168 (568)
T ss_dssp             GSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             hhheeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence            766666774  55555555555443    2468999986

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=91.71  E-value=0.19  Score=44.00  Aligned_cols=104  Identities=13%  Similarity=-0.020  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|.++   ..-++..|...++|+|++.-+-....+...   .....|...+++.
T Consensus        63 a~aA~GyAr~tg~----~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~~---~~Q~~d~~~~~~~  132 (603)
T 4feg_A           63 AMAAAADAKLTGK----IGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNMD---TFQEMNENPIYAD  132 (603)
T ss_dssp             HHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTSC---CTTCCCCGGGGTT
T ss_pred             HHHHHHHHHHhCC----ceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCCC---ccccccHHHHhhh
Confidence            3467787776531    13444555777776   345799999999997666655333222111   1111234556777


Q ss_pred             cCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEe
Q psy786          139 FGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +--...++. -.+ ++.+.+|++.|.. .+||+.|++
T Consensus       133 ~tk~~~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~i  168 (603)
T 4feg_A          133 VADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQI  168 (603)
T ss_dssp             TCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEE
T ss_pred             hceEEEEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEe
Confidence            765566663 222 3456666666654 479999986

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=91.28  E-value=0.38  Score=42.08  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|..+   ..-++..|..-++|+|++.-+-....+... .  ....|...+++.
T Consensus        82 a~aA~GyAr~tgk----pgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~-~--~Q~~d~~~~~~~  151 (604)
T 2x7j_A           82 GFFALGLAKAKQR----PVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVG-A--PQAINQHFLFGN  151 (604)
T ss_dssp             HHHHHHHHHHHTS----CEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSC-C--TTCCCCTTTTGG
T ss_pred             HHHHHHHHHhhCC----CEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCC-C--CCcCcHHHHhhh
Confidence            3467788776531    23445555777666   345788999999996666555332212111 0  111234456666


Q ss_pred             cCceEEEec-CCC--------HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          139 FGFNAVVVD-GHD--------VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~~vd-G~d--------~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      +--..+++. -.+        ++.+.+|++.|....+||+.|++-
T Consensus       152 ~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP  196 (604)
T 2x7j_A          152 FVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP  196 (604)
T ss_dssp             GSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             heeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence            654556663 223        335566666554324689999863

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=90.34  E-value=2.1  Score=39.39  Aligned_cols=106  Identities=8%  Similarity=0.055  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCch--HHHHHHHhhh--c--CCCcEEEEEecCCCccccCcccccccH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS--IWEALHFASY--Y--KLDNLCVIFDINRLGQSEPTSLQHQTE  130 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~--~~eal~~a~~--~--~lp~liiV~~nn~~~~~~~~~~~~~~~  130 (176)
                      ..++.|.|+|+..+     ..+++.-+==|.|..+.  .+.-+...++  |  ++| +++++...+.+ .+++.......
T Consensus       595 ~~vG~a~G~A~~G~-----~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~-vvi~~p~G~~G-~Gp~Hs~~~~E  667 (868)
T 2yic_A          595 AAVGFEYGYSVGNP-----DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGPDHTSGRIE  667 (868)
T ss_dssp             HHHHHHHHHHHHCT-----TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCTTSSCCCHH
T ss_pred             HHHHHHHHHHccCC-----CCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCC-EEEEecCCCCC-CChhhcCCcHH
Confidence            34677889988765     33455555556665543  1232433332  2  788 55556644433 33332222245


Q ss_pred             HHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786          131 VYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI  171 (176)
Q Consensus       131 ~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI  171 (176)
                      +|..+..--|+.++.-  .|+.+....|++++.. .++|++|
T Consensus       668 ~~l~l~~~pnm~V~~P--s~p~~~~~lLr~a~~~~~~~Pvii  707 (868)
T 2yic_A          668 RFLQLWAEGSMTIAMP--STPANYFHLLRRHGKDGIQRPLIV  707 (868)
T ss_dssp             HHHHHCCTTSCEEECC--CSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred             HHHhcCCCCCCEEEEe--CCHHHHHHHHHHHHhcCCCCcEEE
Confidence            5655555558887755  4999999999998754 3599876

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=90.25  E-value=0.55  Score=41.01  Aligned_cols=105  Identities=16%  Similarity=-0.014  Sum_probs=60.4

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+.....+... .  ....|...+
T Consensus        53 ~~Aa~~A~GyAr~tgk----~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-~--~Q~~d~~~~  122 (590)
T 1v5e_A           53 EVGAMAAVMQSKFGGN----LGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMD-A--FQELNQNPM  122 (590)
T ss_dssp             HHHHHHHHHHHHTTCC----CCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTT-C--TTCCCCHHH
T ss_pred             HHHHHHHHHHHHHHCC----CEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCC-c--ccccCHHHH
Confidence            3445577888876531    22444445666665   345688889999996666555433222111 1  111345677


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      ++.+--..+.+.  +++++.+.+++|++    ...+|+.| +
T Consensus       123 ~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-i  161 (590)
T 1v5e_A          123 YDHIAVYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-V  161 (590)
T ss_dssp             HHTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-E
T ss_pred             HHhhccEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-E
Confidence            777765566774  66555555555543    23489988 5

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=89.85  E-value=0.58  Score=40.72  Aligned_cols=105  Identities=13%  Similarity=0.062  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|.++   ..-++..|..-++|+|++.-+-.. ...+.  ..+...|...+++.
T Consensus        62 a~aAdGyAr~tG~----pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~-~~~g~--~~~Qe~d~~~~~~~  131 (578)
T 3lq1_A           62 GFFALGLAKASKR----PVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPH-ELRNV--GAPQAMDQLHLYGS  131 (578)
T ss_dssp             HHHHHHHHHHHCC----CEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCG-GGTTS--SCTTCCCCTTTTGG
T ss_pred             HHHHHHHHHhhCC----CEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCH-HhhcC--CCCCCcCHhhHHhh
Confidence            3367788876531    23455555777776   345799999999996666544222 11111  01111244456666


Q ss_pred             cCceEEEec-CCCHH--------HHHHHHHHHHhhCCCcEEEEe
Q psy786          139 FGFNAVVVD-GHDVE--------HLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vd-G~d~~--------~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +--..+++. ..+..        .+.+|++.|....+||+.|++
T Consensus       132 ~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~i  175 (578)
T 3lq1_A          132 HVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNF  175 (578)
T ss_dssp             GSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             heeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEEC
Confidence            644455663 33422        355666655433469999986

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=88.90  E-value=1.9  Score=37.25  Aligned_cols=107  Identities=11%  Similarity=0.015  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--cc--c-ccccHHHH
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--TS--L-QHQTEVYR  133 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--~~--~-~~~~~~~~  133 (176)
                      .-+|.|.|.+..     -..+++..|=|.++   ..-++..|...++|+|++.-+-........  ..  . .....+..
T Consensus        55 a~~A~Gyar~tg-----~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~  126 (563)
T 2vk8_A           55 AYAADGYARIKG-----MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFH  126 (563)
T ss_dssp             HHHHHHHHHHHS-----CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHH
T ss_pred             HHHHHHHHHhhC-----CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHH
Confidence            446778777642     23455555777765   445788899999996666555322111000  00  0 00112567


Q ss_pred             HHHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          134 KRLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       134 ~~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++++.+--...++. -.+ ++.+.+|++.|... ++|+.|++-
T Consensus       127 ~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP  168 (563)
T 2vk8_A          127 RMSANISETTAMITDIATAPAEIDRCIRTTYVT-QRPVYLGLP  168 (563)
T ss_dssp             HHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEE
T ss_pred             HHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEec
Confidence            78888876667774 122 45677777777643 599999863

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=88.77  E-value=2.7  Score=39.00  Aligned_cols=106  Identities=10%  Similarity=0.072  Sum_probs=58.2

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEE-EECCCccCCc--hHHHHHHHhh--h--cCCCcEEEEEecCCCccccCcccccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYC-LVGDGESAEG--SIWEALHFAS--Y--YKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~-~~GDG~~~~G--~~~eal~~a~--~--~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      ...++.|.|+|++-+.    ..+++. ..|  .|..+  ..++-+...+  .  +++| +++++.. +|.-.++......
T Consensus       662 ~~~vg~a~G~A~~G~~----~lpv~e~qf~--dF~~~AQra~DQii~~~~ak~~~~~~-vv~~l~~-G~~g~G~~Hss~~  733 (933)
T 2jgd_A          662 EAVLAFEYGYATAEPR----TLTIWEAQFG--DFANGAQVVIDQFISSGEQKWGRMCG-LVMLLPH-GYEGQGPEHSSAR  733 (933)
T ss_dssp             HHHHHHHHHHHHHCTT----SEEEEEC-CG--GGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEEC-CCSSSCTTSSCCC
T ss_pred             HHHHHHHHHHHhcCCC----CCCEEEEEEh--hhhcccHHHHHHHHHHHHHHHccCCC-EEEEEeC-CCCCCCcccccch
Confidence            3456778888887541    113443 454  44433  2333343333  3  3788 5555654 4433333322222


Q ss_pred             cHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786          129 TEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI  171 (176)
Q Consensus       129 ~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI  171 (176)
                      ..+|..+..--|+.++.-  .|+.+....+++++.+ .++|++|
T Consensus       734 ~E~~l~~~~~pnm~V~~P--st~~e~~~lLr~a~~~~~~~Pvii  775 (933)
T 2jgd_A          734 LERYLQLCAEQNMQVCVP--STPAQVYHMLRRQALRGMRRPLVV  775 (933)
T ss_dssp             HHHHHHTCCTTCCEEECC--CSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred             HHHHHHHhCCCCeEEEec--CCHHHHHHHHHHHHHhcCCCcEEE
Confidence            344443333347776654  4999999999998534 4799887

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=88.76  E-value=1.5  Score=37.65  Aligned_cols=107  Identities=10%  Similarity=0.014  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCc--c---cccccHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPT--S---LQHQTEVY  132 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~--~---~~~~~~~~  132 (176)
                      +.-+|.|.|.+..    + ..+++..|=|.++   ..-++..|...++|+|++.-+..........  .   ......+.
T Consensus        55 A~~~A~Gyar~tg----~-~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~  126 (552)
T 1ovm_A           55 ASYAADGYARCKG----F-AALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHF  126 (552)
T ss_dssp             HHHHHHHHHHHHS----C-EEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHH
T ss_pred             HHHHHHHHHHhhC----C-cEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHH
Confidence            3446788887642    2 3555666777655   3457889999999976666553321111100  0   00011246


Q ss_pred             HHHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEe
Q psy786          133 RKRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       133 ~~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .++++.+--..+++...+ ++.+.+|++.|... ++|+.|++
T Consensus       127 ~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~i  167 (552)
T 1ovm_A          127 YHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLML  167 (552)
T ss_dssp             HHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred             HHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEe
Confidence            778888877777774222 56677777777643 59999986

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=88.57  E-value=0.38  Score=41.68  Aligned_cols=105  Identities=16%  Similarity=0.059  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|.|.|.+...    -..+++..|=|.++   ..-++..|..-+.|+|++.-+-....+... .  +...|...+++.
T Consensus        59 a~~AdGyAr~tG~----pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~-~--~Q~~d~~~~~~~  128 (556)
T 3hww_A           59 GHLALGLAKVSKQ----PVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCG-A--NQAIRQPGMFAS  128 (556)
T ss_dssp             HHHHHHHHHHHCS----CEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSS-C--TTCCCCTTTTTT
T ss_pred             HHHHHHHHHhhCC----CEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccC-C--CccccHHHHHhh
Confidence            3367777776531    23455556777776   345799999999996666554332222111 1  111244556666


Q ss_pred             cCceEEEec-CC---CHHHHHHHHHHHHhh-CCCcEEEEe
Q psy786          139 FGFNAVVVD-GH---DVEHLVKVSSFKLQK-AIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vd-G~---d~~~l~~al~~a~~~-~~~P~lI~~  173 (176)
                      +--..+.+. ..   ..+++.+++++|+.. .+||+.|++
T Consensus       129 ~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~i  168 (556)
T 3hww_A          129 HPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINC  168 (556)
T ss_dssp             CSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred             heeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeC
Confidence            654555663 11   135688999999843 358999986

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=88.41  E-value=3.3  Score=39.13  Aligned_cols=107  Identities=7%  Similarity=0.020  Sum_probs=63.3

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCch--HHHHHHHhhh----cCCCcEEEEEecCCCccccCccccccc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS--IWEALHFASY----YKLDNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~--~~eal~~a~~----~~lp~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      ...++.|.|+|+..+     ..+++.-+==|.|..+.  .++-+...++    .++| +++.+...+.+ .+++..+...
T Consensus       839 ~~~vg~a~G~A~~G~-----~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~-vv~~lp~G~~G-~G~~Hs~~~~  911 (1113)
T 2xt6_A          839 FAAVGFEYGYSVGNP-----DAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSD-VVLLLPHGHEG-QGPDHTSGRI  911 (1113)
T ss_dssp             HHHHHHHHHHHHHCT-----TSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCC-CEEEEECCCSS-SCTTSSCCCH
T ss_pred             HHHHHHHHHHHhcCC-----CCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCC-EEEEeCCCCCC-CChhhhcccH
Confidence            345677889998765     33455555556665543  1222333332    2788 55556644433 3333323224


Q ss_pred             HHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh-CCCcEEE
Q psy786          130 EVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK-AIGCVWI  171 (176)
Q Consensus       130 ~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI  171 (176)
                      .+|..+..--|+.++.-  .|+.+....|++++.. .++|++|
T Consensus       912 E~~l~l~~~pnm~V~~P--s~~~~~~~lLr~a~~~~~~~Pvii  952 (1113)
T 2xt6_A          912 ERFLQLWAEGSMTIAMP--STPANYFHLLRRHGKDGIQRPLIV  952 (1113)
T ss_dssp             HHHHHHCCTTSCEEECC--SSHHHHHHHHHHHHHSSCCCCEEE
T ss_pred             HHHHhcCCCCCcEEEec--CCHHHHHHHHHHHHhccCCCCEEE
Confidence            45555554458887755  4999999999998754 3589887

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=86.80  E-value=0.54  Score=40.30  Aligned_cols=108  Identities=10%  Similarity=-0.059  Sum_probs=59.1

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      ..+.-+|.|.|.+...    -..+++..|=|..+   ..-++..|...++|+|++.-+-....+. ....+. ..|...+
T Consensus        48 ~~Aa~~A~Gyar~tg~----~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~-~~~~q~-~~d~~~~  118 (528)
T 1q6z_A           48 ACVVGIADGYAQASRK----PAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIG-VEALLT-NVDAANL  118 (528)
T ss_dssp             HHHHHHHHHHHHHHTS----CEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHT-TTCTTC-CTTGGGS
T ss_pred             HHHHHHHHHHHHHhCC----CEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccC-CCcccc-cccHHHH
Confidence            3344578888877531    23344555777775   3457888999999966665543221111 100111 1244556


Q ss_pred             HhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++.+--...++.  ++++    +.+|++.|....+||+.|++-
T Consensus       119 ~~~~~k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP  159 (528)
T 1q6z_A          119 PRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVP  159 (528)
T ss_dssp             STTSCSCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred             HHHhhHhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence            666644445553  4444    455555554334589999863

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=86.66  E-value=2.2  Score=36.92  Aligned_cols=109  Identities=16%  Similarity=0.081  Sum_probs=62.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC----ccccc-ccHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP----TSLQH-QTEV  131 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~----~~~~~-~~~~  131 (176)
                      .+.-+|.|.|.+..     -..+++..|=|.++   ..-++..|...++|+|++.-+.........    +.... ...+
T Consensus        74 ~A~~~A~GyAr~tG-----~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~  145 (570)
T 2vbf_A           74 NASYMADGYARTKK-----AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKH  145 (570)
T ss_dssp             HHHHHHHHHHHHHS-----CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCH
T ss_pred             HHHHHHHHHHHHhC-----CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHH
Confidence            34456778776531     22445555666554   445788899999997666655333221110    00000 1224


Q ss_pred             HHHHHhhcCceEEEecCCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          132 YRKRLDAFGFNAVVVDGHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       132 ~~~~a~a~G~~~~~vdG~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ...+++.+--..+++.-.+ ++.+.+|++.|.. .++|+.|++-
T Consensus       146 ~~~~~~~~tk~~~~v~~~~~~~~l~~A~~~A~~-~~GPV~l~iP  188 (570)
T 2vbf_A          146 FMKMHEPVTAARTLLTAENATYEIDRVLSQLLK-ERKPVYINLP  188 (570)
T ss_dssp             HHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHH-HCCCEEEEEE
T ss_pred             HHHHhhhhEEEEEEECcccHHHHHHHHHHHHhh-CCCCEEEEcc
Confidence            5678888876667774222 3556777777764 3599999863

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=82.94  E-value=12  Score=27.36  Aligned_cols=92  Identities=16%  Similarity=0.093  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCC-----------CccccCcc
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR-----------LGQSEPTS  124 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~-----------~~~~~~~~  124 (176)
                      |..+..|+-.|+..-......+++|.++.||.-..+...+.+..+...++++.+|-+-+..           |.-.....
T Consensus        91 ~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~  170 (218)
T 3ibs_A           91 GTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGN  170 (218)
T ss_dssp             SCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSC
T ss_pred             CCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCC
Confidence            3444445544443211011245799999999988765566677777777774444443211           11000000


Q ss_pred             c---ccccHHHHHHHhhcCceEEEec
Q psy786          125 L---QHQTEVYRKRLDAFGFNAVVVD  147 (176)
Q Consensus       125 ~---~~~~~~~~~~a~a~G~~~~~vd  147 (176)
                      .   ......+.++|+.-|..++.++
T Consensus       171 ~~~~~~~~~~L~~iA~~~gG~~~~~~  196 (218)
T 3ibs_A          171 VIVTRLNEGMCQEIAKDGKGIYVRVD  196 (218)
T ss_dssp             BCEECCCHHHHHHHHHHTEEEEEEEC
T ss_pred             EeEecCCHHHHHHHHHhcCCEEEECC
Confidence            0   1223457889999999999885

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=80.68  E-value=5.4  Score=38.08  Aligned_cols=99  Identities=9%  Similarity=-0.082  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCc--cccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG--QSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~--~~~~~~~~~~~~~~~~  134 (176)
                      .++++++|++++=       .++++.+--.++.  ...|.|..++-..+|+|+++.+..+-+  ++...    ...|+. 
T Consensus        65 aA~~aaiGAa~aG-------aR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~glsi~~----~hsd~~-  130 (1231)
T 2c42_A           65 GAAGAVHGALAAG-------ALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIFG----DHQDIY-  130 (1231)
T ss_dssp             HHHHHHHHHHHTT-------CCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCSC----CSHHHH-
T ss_pred             HHHHHHHHHHHcC-------ChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCCCcCCC----chhhHH-
Confidence            3467788888863       3566665444554  345777655556899777777654321  11111    112332 


Q ss_pred             HHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEE
Q psy786          135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWI  171 (176)
Q Consensus       135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI  171 (176)
                      .++..||..+.-  .+++|...-...|+.   +.+-|+++
T Consensus       131 ~ar~~G~~vl~p--ss~QEa~dl~~~Af~lAek~~~PVi~  168 (1231)
T 2c42_A          131 AARQTGFAMLAS--SSVQEAHDMALVAHLAAIESNVPFMH  168 (1231)
T ss_dssp             TTTTSSCEEEEC--CSHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             HHhcCCcEEEEC--CCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            367778877755  488888877777743   34678775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1gpua1	335	c.36.1.10 (A:3-337) Transketolase (TK), PP module	9e-27
d2r8oa2	331	c.36.1.10 (A:2-332) Transketolase (TK), PP module	3e-20
d2ieaa2	415	c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com	7e-16
d1itza1	338	c.36.1.10 (A:10-347) Transketolase (TK), PP module	1e-13
d1r9ja2	336	c.36.1.10 (A:1-336) Transketolase (TK), PP module	6e-12

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 335

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 9e-27
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 11/145 (7%)

Query: 16  WAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVG----- 69
               G    + +LK  R++ S   GHP   L  ++V TG LGQG+S A GMA        
Sbjct: 76  LHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAA 135

Query: 70  ----KYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL 125
                 F  +   TY  +GDG   EG   EA   A + KL NL  I+D N++     TS+
Sbjct: 136 TYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSI 195

Query: 126 QHQTEVYRKRLDAFGFNAVVVDGHD 150
               E   KR +A+G+  + V+  +
Sbjct: 196 SFD-EDVAKRYEAYGWEVLYVENGN 219

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

 Score = 83.7 bits (206), Expect = 3e-20
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 16  WAEAGL-FPVSELKNLRKIDSDLEGHPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKY-- 71
               G   P+ ELKN R++ S   GHP       ++  TG LGQG++ A GMA   K   
Sbjct: 74  LHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLA 133

Query: 72  -------FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS 124
                   D   + TY  +GDG   EG   E    A   KL  L   +D N +   +   
Sbjct: 134 AQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI-SIDGHV 192

Query: 125 LQHQTEVYRKRLDAFGFN 142
               T+    R +A+G++
Sbjct: 193 EGWFTDDTAMRFEAYGWH 210

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

 Score = 71.8 bits (175), Expect = 7e-16
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 16  WAEAGLFPVSELKNLRKIDSDL----EGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKY 71
               G     +L N R+           HP     F    T S+G G   A   A   KY
Sbjct: 96  AFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKY 155

Query: 72  FD------KASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL 125
            +       +    Y  +GDGE  E     A+  A+  KLDNL  + + N      P + 
Sbjct: 156 LEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTG 215

Query: 126 QHQ-TEVYRKRLDAFGFNAVVVDGHD 150
             +         +  G+N + V    
Sbjct: 216 NGKIINELEGIFEGAGWNVIKVMWGS 241

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 11/150 (7%)

Query: 26  ELKNLRKIDSDLEGHPTPRLN-FIDVGTGSLGQGLSVAAGMAYVGKY---------FDKA 75
           +LK  R+  S   GHP       ++V TG LGQG++ A G+A   K+          +  
Sbjct: 90  DLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIV 149

Query: 76  SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
            + TY ++GDG   EG   EA   A ++ L  L   +D N     +  +    TE    R
Sbjct: 150 DHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDN-HISIDGDTEIAFTEDVSTR 208

Query: 136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQKA 165
            +A G++ + V   +  +    ++ K  KA
Sbjct: 209 FEALGWHTIWVKNGNTGYDDIRAAIKEAKA 238

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 336

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

 Score = 60.7 bits (146), Expect = 6e-12
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 22  FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKY--------- 71
             + +LK  R+  S   GHP       ++V TG LGQG++ A G+A    +         
Sbjct: 82  LTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPG 141

Query: 72  FDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
           ++   + TY   GDG   EG   EAL  A +  L+ L VI+D N +   + ++    TE 
Sbjct: 142 YNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQ 200

Query: 132 YRKRLDAFGFNAVVVDGHDVEH 153
             ++  A GF+ + V   D ++
Sbjct: 201 CHQKYVAMGFHVIEVKNGDTDY 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	100.0
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	100.0
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	99.98
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.97
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	99.95
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	99.95
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	99.95
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	99.95
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.94
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	99.93
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.93
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.93
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.93
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.92
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.92
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	99.91
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.91
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.91
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.9
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.89
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.89
d2c42a2	447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	98.73
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	96.43
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	96.17
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	96.08
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	96.06
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	96.02
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	95.97
d2r8oa1	195	Transketolase (TK), Pyr module {Escherichia coli [	95.94
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	95.93
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	95.89
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	95.8
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	95.55
d1gpua2	197	Transketolase (TK), Pyr module {Baker's yeast (Sac	94.93
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	94.81
d1itza2	192	Transketolase (TK), Pyr module {Maize (Zea mays) [	94.73
d2bfdb1	203	Branched-chain alpha-keto acid dehydrogenase, Pyr	93.74
d1qs0b1	204	2-oxoisovalerate dehydrogenase (E1B), Pyr module {	93.42
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	93.39
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	93.28
d1ik6a1	191	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	92.65
d2ozlb1	192	E1-beta subunit of pyruvate dehydrogenase, Pyr mod	92.58
d1umdb1	186	Branched-chain alpha-keto acid dehydrogenase, Pyr	89.26
d1w85b1	192	Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d	88.77

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-34  Score=234.74  Aligned_cols=165  Identities=27%  Similarity=0.360  Sum_probs=149.0

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhcC---------CCcce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~   78 (176)
                      +.+|++|...|+ ++.|+|.+||+.++.+++||++. +|+++.++|++|++++.|+|+|++.|+++         ..+++
T Consensus        68 ~~~Ya~l~~~G~~~~~e~l~~f~~~gs~~~ghp~~~~~~gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~  147 (331)
T d2r8oa2          68 MLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHY  147 (331)
T ss_dssp             HHHHHHHHHHTCSCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             HHHHHHHHHhCCCCCHHHHHhcCCCCCCCCCCCCcCcCCCcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCce
Confidence            468999999997 99999999999999999999975 78999999999999999999999988642         13578


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEE-EecCCCHHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAV-VVDGHDVEHLVKV  157 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~-~vdG~d~~~l~~a  157 (176)
                      |+|++|||++++|.+|||+.+|+.++|++|++|+|+|.+++.+.++... ..++.+.+++|||+++ .+||+|.+++.+|
T Consensus       148 v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~~~~g~~~~~~-~~~~~~rf~afGw~vi~~~dghd~~~i~~A  226 (331)
T d2r8oa2         148 TYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRA  226 (331)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHH
T ss_pred             EEEecccccccccchhHhhhhcchhcccceeeHHhhhhhcccccccccc-chhHHHHHHHcCCeeecccccchHHHHHHH
Confidence            9999999999999999999999999999999999999999988877655 4678899999999998 4799999999999


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +.+|.+..++|++|.+++
T Consensus       227 ~~~a~~~~~kP~~Ii~~T  244 (331)
T d2r8oa2         227 VEEARAVTDKPSLLMCKT  244 (331)
T ss_dssp             HHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHhhcCCCccceeee
Confidence            999975678999998764

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-33  Score=231.22  Aligned_cols=165  Identities=30%  Similarity=0.400  Sum_probs=146.6

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcC---------CCcceE
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFD---------KASYRT   79 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~---------~~~~~v   79 (176)
                      +.+|++|...|+ ++.|+|.+||+.++.++|||++.+|++++++|++|++++.|+|+|++.|++.         ..+++|
T Consensus        70 ~~lYa~l~~~G~~~~~e~L~~fr~~gs~~~ghp~~~~pgie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v  149 (335)
T d1gpua1          70 ALLYSMLHLTGYDLSIEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYT  149 (335)
T ss_dssp             HHHHHHHHHTTCSCCHHHHTTTTCTTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCE
T ss_pred             HHHHHHHHHhCCCCCHHHHHhcccCCCCCCCCCCCCCCCeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcE
Confidence            569999999997 9999999999999999999998899999999999999999999999987532         236789


Q ss_pred             EEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHHH
Q psy786           80 YCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVKV  157 (176)
Q Consensus        80 v~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~a  157 (176)
                      +|++|||++++|..|||+.+|++++|.+|++|+|+|.+++++.+..... .++.+.+++|||++++|||  +|...+..+
T Consensus       150 ~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~~-~~~~~~f~a~GW~vi~vdg~~~d~~~~~~~  228 (335)
T d1gpua1         150 YVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFD-EDVAKRYEAYGWEVLYVENGNEDLAGIAKA  228 (335)
T ss_dssp             EEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCC-CCHHHHHHHHTCEEEEESCTTTCHHHHHHH
T ss_pred             EEEecchhhchhhhhhhHhHhhhhccCCEEEEEeccccccccccccccc-CCHHHHHHhCCCcEEEEcCCchhHHHHHHH
Confidence            9999999999999999999999999999999999999999887765554 6889999999999999974  467778888


Q ss_pred             HHHHHhhCCCcEEEEeee
Q psy786          158 SSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~~~~P~lI~~~~  175 (176)
                      +.++....++|++|.+++
T Consensus       229 ~~~~~~~~~KPt~Iia~T  246 (335)
T d1gpua1         229 IAQAKLSKDKPTLIKMTT  246 (335)
T ss_dssp             HHHHHHCTTSCEEEEEEC
T ss_pred             HhhhhcccCCCcceEEee
Confidence            877765567999998764

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.98  E-value=5.2e-32  Score=222.99  Aligned_cols=165  Identities=30%  Similarity=0.363  Sum_probs=144.6

Q ss_pred             hHHHHHHHHcCC-CCHHHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhc---------CCCcce
Q psy786           10 TNRSKAWAEAGL-FPVSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYF---------DKASYR   78 (176)
Q Consensus        10 ~~~ya~l~~~G~-~~~e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~---------~~~~~~   78 (176)
                      +.+|++|...|+ ++.+++.+||+.++.+++||++. +|+++.++|++|++++.|+|+|++.|++         +.-+++
T Consensus        69 ~~lYa~l~~~G~~~~~~~l~~~~~~~s~~~ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~  148 (336)
T d1r9ja2          69 ALQYALLHMAGYNLTMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHY  148 (336)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCC
T ss_pred             hHHHHHHHHcCCCCcHHHHhhhccCCCcCcccccccCCCcccccccccccCcchhhHHHHHHHHHhccccccccccccce
Confidence            569999999996 89999999999999999999975 6899999999999999999999998753         223568


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecC--CCHHHHHH
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDG--HDVEHLVK  156 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG--~d~~~l~~  156 (176)
                      |+|++|||++++|.+|||+.+|+.++|++|++|+|||..++++.+.... ..++.+++++|||+++.|||  +|.+.+..
T Consensus       149 vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~idg~~~~~~-~~d~~~rf~afGW~vi~Vdgg~~d~~~~~~  227 (336)
T d1r9ja2         149 TYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRK  227 (336)
T ss_dssp             EEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHH
T ss_pred             eEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEecccccccccccccc-hhHHHHHHHHhccceEEEecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999887655443 47899999999999999976  45677888


Q ss_pred             HHHHHHhhCCCcEEEEeee
Q psy786          157 VSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       157 al~~a~~~~~~P~lI~~~~  175 (176)
                      ++.++.....+|++|..++
T Consensus       228 ~~~~a~~~~~kP~~Ii~kT  246 (336)
T d1r9ja2         228 ALAEAKATKGKPKMIVQTT  246 (336)
T ss_dssp             HHHHHHHCCSSCEEEEEEC
T ss_pred             HhhhhhhccCCCccceEEE
Confidence            8877765567899998764

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=9.4e-32  Score=221.54  Aligned_cols=165  Identities=27%  Similarity=0.348  Sum_probs=144.6

Q ss_pred             hHHHHHHHHcCCCCH--HHHhhhhhcCCCCCCCCCCC-CCccccCCcccchhHHHHHHHHHhchhc---------CCCcc
Q psy786           10 TNRSKAWAEAGLFPV--SELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYF---------DKASY   77 (176)
Q Consensus        10 ~~~ya~l~~~G~~~~--e~l~~~r~~~~~l~~~~~~~-~~~~~~~~g~~G~~l~~AvG~A~a~~~~---------~~~~~   77 (176)
                      +.+|++|...|+++.  ++|.+||+.++.++|||++. +|++++++|++|++++.|+|+|++.+++         +.-++
T Consensus        72 ~~~Ya~l~~~G~~~~~~~dL~~fr~~~s~~~Ghp~~~~~pgve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~  151 (338)
T d1itza1          72 MLQYALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDH  151 (338)
T ss_dssp             HHHHHHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCC
T ss_pred             hHHHHHHHHcCCccchHHHHHHhhccCCcCCccccCCCCCCccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccc
Confidence            569999999999765  46889999999999999975 8999999999999999999999998753         12357


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEec-CC-CHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVD-GH-DVEHLV  155 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vd-G~-d~~~l~  155 (176)
                      +|+|++|||++++|..|||+.+|..++|.+|++|+|+|.+++++.+.... ..++.+.+++|||++++|+ |+ |.+++.
T Consensus       152 ~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~~dg~~~~~~-~~~~~~k~~a~Gw~vi~v~~g~~~~~~i~  230 (338)
T d1itza1         152 YTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIR  230 (338)
T ss_dssp             CEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHH
T ss_pred             eEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhcccccccccccc-CCCHHHHHHhcCCeEEEeeCCchhHHHHH
Confidence            89999999999999999999999999999999999999999987765443 4688999999999999885 43 689999


Q ss_pred             HHHHHHHhhCCCcEEEEeee
Q psy786          156 KVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       156 ~al~~a~~~~~~P~lI~~~~  175 (176)
                      .++++|.....+|++|.+++
T Consensus       231 ~a~~~a~~~~~kPt~Iia~T  250 (338)
T d1itza1         231 AAIKEAKAVTDKPTLIKVTT  250 (338)
T ss_dssp             HHHHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHHHHccCCCceeEeec
Confidence            99999876678999998764

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-28  Score=203.40  Aligned_cols=161  Identities=18%  Similarity=0.178  Sum_probs=130.9

Q ss_pred             HHHHHHcCCCCHHHHhhh-h-hc----CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCC
Q psy786           13 SKAWAEAGLFPVSELKNL-R-KI----DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDG   86 (176)
Q Consensus        13 ya~l~~~G~~~~e~l~~~-r-~~----~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG   86 (176)
                      ++.++++|+.+.+.+..+ . ..    |...+.|....-.++...++++|.++|.|+|+|++.|+ .+.++.++|++|||
T Consensus       111 h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~-~~~~~v~v~~~GDG  189 (395)
T d2bfda1         111 AGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKR-ANANRVVICYFGEG  189 (395)
T ss_dssp             HHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHHH-HTCCCCEEEEEETT
T ss_pred             hHhhhhhhCCHHHHHHHHhhcccCccccccccccccccccccccccccccccccHHHHHHHHhhh-cCcccccccccCCC
Confidence            567777896555544443 1 11    22233443322224445789999999999999999987 45567999999999


Q ss_pred             ccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhh--
Q psy786           87 ESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQK--  164 (176)
Q Consensus        87 ~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~--  164 (176)
                      ++.+|.++|+|++|+.|+|| ++|||+||+|+++++...+....++++++++||+++++|||+|+.++++++++|+++  
T Consensus       190 a~~eG~f~EalN~A~~~~lP-vlfv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R  268 (395)
T d2bfda1         190 AASEGDAHAGFNFAATLECP-IIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAV  268 (395)
T ss_dssp             GGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHhhcCCc-eEEEEEecccccccccchhhcchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhh
Confidence            99999999999999999999 778899999999999888877788999999999999999999999999999999874  


Q ss_pred             -CCCcEEEEeee
Q psy786          165 -AIGCVWIQRGC  175 (176)
Q Consensus       165 -~~~P~lI~~~~  175 (176)
                       .++|+|||+.|
T Consensus       269 ~g~gP~lIE~~T  280 (395)
T d2bfda1         269 AENQPFLIEAMT  280 (395)
T ss_dssp             HHTCCEEEEEEC
T ss_pred             ccCCceEEEEee
Confidence             36899999875

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=3.7e-28  Score=201.58  Aligned_cols=169  Identities=20%  Similarity=0.207  Sum_probs=136.7

Q ss_pred             CCCCChH-HHHHHHHcCCCCHHHHhhh-h-hc----CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786            5 EIPFRTN-RSKAWAEAGLFPVSELKNL-R-KI----DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus         5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~-r-~~----~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      |.-|.+. -++.++++|..+.+.+..+ . ..    |...+.|..-...++...++++|.++|.|+|+|++.|+ .+.++
T Consensus        84 D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~-~~~~~  162 (362)
T d1umda_          84 DWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKL-LRTGQ  162 (362)
T ss_dssp             SEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHH-TTCCC
T ss_pred             CeEEeccccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhc-ccccc
Confidence            5555544 4678888997766666554 1 11    22234443322334556789999999999999999997 45678


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV  157 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a  157 (176)
                      .++|++|||++.+|.++|+|++|+.|+|| ++|||+||+|+++++.+.+....++.+++++||+++++|||+|+.+++++
T Consensus       163 v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a  241 (362)
T d1umda_         163 VAVCTFGDGATSEGDWYAGINFAAVQGAP-AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYV  241 (362)
T ss_dssp             CEEEEEETGGGGSHHHHHHHHHHHHTTCS-EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHH
T ss_pred             eeeeeccCCcccCCchHHHHHHhhhccCC-eeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHH
Confidence            99999999999999999999999999999 78889999999999888777777788999999999999999999999999


Q ss_pred             HHHHHhh---CCCcEEEEeee
Q psy786          158 SSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       158 l~~a~~~---~~~P~lI~~~~  175 (176)
                      +++|+++   .++|+|||+.|
T Consensus       242 ~~~Ai~~~R~g~gP~lIE~~t  262 (362)
T d1umda_         242 VKEAVERARRGEGPSLVELRV  262 (362)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEC
T ss_pred             HHHHHHHHHhcCCCEEEEccc
Confidence            9999863   35899999876

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=3.8e-28  Score=201.60  Aligned_cols=166  Identities=20%  Similarity=0.200  Sum_probs=132.0

Q ss_pred             CCCCChH-HHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEE
Q psy786            5 EIPFRTN-RSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLV   83 (176)
Q Consensus         5 ~~~~~~~-~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~   83 (176)
                      |.-|++. =++.++++|+.+.+.+...+..+   .+...++-.++-..++++|.++|.|+|+|++.|+ .+.+++++|++
T Consensus        93 D~i~~~yR~hg~~la~G~~~~~~~~~~~G~~---~g~~~~~~~~~~~~~~ivG~~~p~AvG~A~a~k~-~~~~~v~v~~~  168 (365)
T d1w85a_          93 DFILPGYRDVPQIIWHGLPLYQAFLFSRGHF---HGNQIPEGVNVLPPQIIIGAQYIQAAGVALGLKM-RGKKAVAITYT  168 (365)
T ss_dssp             CEEECCSSCHHHHHHTTCCHHHHHHHHHTCG---GGGCCCTTCCBCCCCCSTTHHHHHHHHHHHHHHH-TTCSCCEEEEE
T ss_pred             CEeeecccchheeeecCCCHHHHHHhhCCCC---CccCCCCCceeeccccccCccccchhhHHhhhhh-cccCCceeeec
Confidence            4344444 46788889976555554433221   1111112112334678999999999999999997 55678999999


Q ss_pred             CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh
Q psy786           84 GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ  163 (176)
Q Consensus        84 GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~  163 (176)
                      |||++.+|.++|+|++|+.|+|| ++|||+||+|+++++...+....++..++++||+++++|||+|+.++++++++|++
T Consensus       169 GDGa~~eG~f~EalN~A~~~~lP-vlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v~~a~~~A~~  247 (365)
T d1w85a_         169 GDGGTSQGDFYEGINFAGAFKAP-AIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARE  247 (365)
T ss_dssp             ETGGGGSHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHH
T ss_pred             cCCcccchhHHHHHHHhhhcccC-ceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHHHHHHHHHHH
Confidence            99999999999999999999999 78889999999999988777777888999999999999999999999999999987


Q ss_pred             hC---CCcEEEEeee
Q psy786          164 KA---IGCVWIQRGC  175 (176)
Q Consensus       164 ~~---~~P~lI~~~~  175 (176)
                      +.   ++|+|||+.|
T Consensus       248 ~~R~g~gP~lie~~t  262 (365)
T d1w85a_         248 RAINGEGPTLIETLC  262 (365)
T ss_dssp             HHHTTSCCEEEEEEC
T ss_pred             HhhcCCccEEEEeec
Confidence            42   5899999976

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=6.2e-28  Score=202.46  Aligned_cols=171  Identities=19%  Similarity=0.200  Sum_probs=135.4

Q ss_pred             CCCCCCChH-HHHHHHHcCCCCHHHHhhh-h-hc----CCCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCC
Q psy786            3 TNEIPFRTN-RSKAWAEAGLFPVSELKNL-R-KI----DSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA   75 (176)
Q Consensus         3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~-r-~~----~~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~   75 (176)
                      .+|+-|.+. -++.++++|..+.+.+..+ . ..    |...+.|......++...++++|.++|.|+|+|++.|+ .+.
T Consensus       124 ~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~-~~~  202 (407)
T d1qs0a_         124 RTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAI-KGD  202 (407)
T ss_dssp             TTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHH-TTC
T ss_pred             CCCEEEecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhh-ccC
Confidence            345555555 5788899997655555544 1 11    22234443322334556789999999999999999997 455


Q ss_pred             cceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc-cHHHHHHHhhcCceEEEecCCCHHHH
Q psy786           76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRKRLDAFGFNAVVVDGHDVEHL  154 (176)
Q Consensus        76 ~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~vdG~d~~~l  154 (176)
                      ++.++|++|||++.+|.++|+|++|+.|+|| ++|||.||+|+++++...... ..++++++++||+++++|||+|+.++
T Consensus       203 ~~v~v~~~GDGa~~eG~f~EalN~A~~~~lP-vifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDGnD~~av  281 (407)
T d1qs0a_         203 TKIASAWIGDGATAESDFHTALTFAHVYRAP-VILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAV  281 (407)
T ss_dssp             CCCEEEEEETGGGGSHHHHHHHHHHHHHTCC-EEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHH
T ss_pred             cceecccccccccccchHHHHHHHHhccCcc-eEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEeccccHHHH
Confidence            6799999999999999999999999999999 678899999999998765433 45688999999999999999999999


Q ss_pred             HHHHHHHHhh---CCCcEEEEeee
Q psy786          155 VKVSSFKLQK---AIGCVWIQRGC  175 (176)
Q Consensus       155 ~~al~~a~~~---~~~P~lI~~~~  175 (176)
                      ++++++|+++   .++|+|||+.|
T Consensus       282 y~a~~~A~e~aR~g~gP~lIE~~T  305 (407)
T d1qs0a_         282 YAASRWAAERARRGLGPSLIEWVT  305 (407)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCceEEEEee
Confidence            9999999874   35899999875

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.94  E-value=5.8e-27  Score=183.48  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=101.9

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      .+...|+||+++|.|+|+++|++     +++|+|++|||+|++  ..++|.||+++++|+++||+||++|++....+   
T Consensus        47 ~s~~~g~mG~~lp~aiGa~~a~p-----~~~vv~i~GDGsf~m--~~~eL~ta~~~~lpi~iiV~nN~~~~~i~~~~~~~  119 (229)
T d2djia3          47 TSPLFATMGIAIPGGLGAKNTYP-----DRQVWNIIGDGAFSM--TYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT  119 (229)
T ss_dssp             CCCSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCTHHHHHHHHH
T ss_pred             ecCCcccccccchhhhhhhhhcc-----ccccccccccccccc--ccchhhhhhcccCCceEEEeCCchhhhhhHHHHhh
Confidence            44578999999999999999987     789999999999986  44579999999999999999999998754322   


Q ss_pred             ------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh--hCCCcEEEEeee
Q psy786          125 ------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ--KAIGCVWIQRGC  175 (176)
Q Consensus       125 ------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~--~~~~P~lI~~~~  175 (176)
                            ...+.+||+++|++||+++++|+  +++++.+++++|++  +..+|+|||+++
T Consensus       120 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~A~~~~~~~~p~lIev~v  176 (229)
T d2djia3         120 NKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKAGHTVVIDCKI  176 (229)
T ss_dssp             CSCCCSCBCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCCcCcCCCCChhhhhhccCccEEEEe--cHHHhHHHHHHHHHhcCCCCeEEEEEEe
Confidence                  22345799999999999999997  89999999999974  356999999975

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-26  Score=190.64  Aligned_cols=170  Identities=21%  Similarity=0.229  Sum_probs=129.0

Q ss_pred             CCCCCCChH-HHHHHHHcCCCCHHHHhhhhh--cC--CCCCCCCCCCCCccccCCcccchhHHHHHHHHHhchhcCCCcc
Q psy786            3 TNEIPFRTN-RSKAWAEAGLFPVSELKNLRK--ID--SDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASY   77 (176)
Q Consensus         3 ~~~~~~~~~-~ya~l~~~G~~~~e~l~~~r~--~~--~~l~~~~~~~~~~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~   77 (176)
                      .+|.-|.+. =++..++.|+.+.+.+..+..  .|  .+-.++.+....++...++++|.++|.|+|+|++.|+ .+.++
T Consensus        81 ~~D~~~~~yR~~~~~la~G~~~~~~~ae~~gk~~g~~~G~~~~~h~~~~~~~~~~~ivg~~~p~A~G~A~a~k~-~~~~~  159 (361)
T d2ozla1          81 PTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKY-NGKDE  159 (361)
T ss_dssp             TTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHH-HTCCC
T ss_pred             ccCEecccccchheeeeecccchhhhhhccCCccccccccccccccccccccCccccccccchhHHHHHHHhhh-ccCCC
Confidence            344444443 357788889765555555421  11  1112222222234556789999999999999999997 45578


Q ss_pred             eEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhhcCceEEEecCCCHHHHHHH
Q psy786           78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKV  157 (176)
Q Consensus        78 ~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~a  157 (176)
                      .|+|++|||++.+|.++|+|++|+.|+|| ++|||+||+|+++++........+..  .+++|+++++|||+|+.+++++
T Consensus       160 v~~~~~GDGa~~eG~f~Ealn~A~~~~lP-vifv~eNN~yaist~~~~~~~~~~~~--~~~~~~~~~~vdGnD~~av~~a  236 (361)
T d2ozla1         160 VCLTLYGDGAANQGQIFEAYNMAALWKLP-CIFICENNRYGMGTSVERAAASTDYY--KRGDFIPGLRVDGMDILCVREA  236 (361)
T ss_dssp             CEEEEEETTGGGCHHHHHHHHHHHHTTCC-EEEEEEECSEETTEEHHHHCSCCCGG--GTTTTSCEEEEETTCHHHHHHH
T ss_pred             eEEEEecCCCccCcchhhhhhhhhhccCc-eEEEEEeCCcccCCCchhcccccccc--ccccccceEEeccCCchHHHHH
Confidence            99999999999999999999999999999 78889999999998876655444433  3577899999999999999999


Q ss_pred             HHHHHhh---CCCcEEEEeeeC
Q psy786          158 SSFKLQK---AIGCVWIQRGCC  176 (176)
Q Consensus       158 l~~a~~~---~~~P~lI~~~~~  176 (176)
                      +++|+++   .++|+|||+.|.
T Consensus       237 ~~~A~~~~R~g~gP~liE~~Ty  258 (361)
T d2ozla1         237 TRFAAAYCRSGKGPILMELQTY  258 (361)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECC
T ss_pred             HHHHHHHHhccCCCEEEEEeee
Confidence            9999873   358999999874

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.93  E-value=5.2e-27  Score=181.29  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=102.1

Q ss_pred             ccccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc-
Q psy786           47 FIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL-  125 (176)
Q Consensus        47 ~~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~-  125 (176)
                      ....+.++||+++|+|+|+++|.+     +++|||++|||+|++.  .++|.||++++||+++||+||++|++....+. 
T Consensus        46 ~~~~~~g~mG~glpaaiGa~~A~p-----~~~Vi~i~GDGsf~m~--~~El~Ta~r~~lpi~iiV~NN~~~g~i~~~q~~  118 (208)
T d1ybha3          46 LSSGGLGAMGFGLPAAIGASVANP-----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDR  118 (208)
T ss_dssp             ECCCSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHH
T ss_pred             ccccccccchhhhhhHHHHHhcCC-----CCcEEEEccCCchhhh--hhhHHHHHHhCCCEEEEEEeccccccceehhhh
Confidence            344578999999999999999987     7899999999999964  45699999999999999999999987543211 


Q ss_pred             -----------------ccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 -----------------QHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 -----------------~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                                       ....+||+++|++||+++++|+  ++++|.+++++|+ ..++|+|||+.|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~i  182 (208)
T d1ybha3         119 FYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML-DTPGPYLLDVIC  182 (208)
T ss_dssp             HSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH-HSSSCEEEEEEC
T ss_pred             cccccccccccccccccCCCCCCHHHhhccCCceEEEcC--CHHHHHHHHHHHH-hCCCCEEEEEEE
Confidence                             1233689999999999999996  9999999999998 578999999975

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.93  E-value=2.5e-27  Score=181.80  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=101.1

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ..+.|+||+++|.|+|++++.+     +++|||++|||+|+++  .++|.|++++++|+++||+||++|++....+    
T Consensus        58 ~~~~g~mG~~lp~aiGa~~a~p-----~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~~~g~i~~~q~~~~  130 (198)
T d2ihta3          58 SAGCSSFGYGIPAAIGAQMARP-----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGH  130 (198)
T ss_dssp             CSSSCCTTCHHHHHHHHHHHST-----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHH
T ss_pred             cCCcccchhHHHHHHHHhhhhc-----ccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhccccceEeeeecccc
Confidence            3467999999999999999987     7899999999999863  4569999999999999999999998754321    


Q ss_pred             -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                             .....+||.++|++||+++++|+  ++++|.+++++|+ +.++|+|||+++
T Consensus       131 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIeV~v  185 (198)
T d2ihta3         131 HRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA-ELGRPFLIEVPV  185 (198)
T ss_dssp             SSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH-TSSSCEEEEEEB
T ss_pred             ccccccccccCCcchhhhccccCceEEEeC--CHHHHHHHHHHHH-hCCCCEEEEEEc
Confidence                   12345799999999999999996  8999999999998 578999999975

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=2.7e-26  Score=173.93  Aligned_cols=118  Identities=24%  Similarity=0.310  Sum_probs=101.5

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      +..+.|+||+++|.|+|+++|.+     +++|||++|||+|+++  .+++++++++++|++++|+||++|++....+   
T Consensus        55 ~~~~~g~mG~~~p~AiGa~la~p-----~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~~~g~~~~~~~~~  127 (183)
T d1q6za3          55 YFCAAGGLGFALPAAIGVQLAEP-----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVL  127 (183)
T ss_dssp             EECTTCCTTSHHHHHHHHHHHCT-----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHH
T ss_pred             ccccCCCcccchhHHHhhhhhcc-----ccceEEeccccccccc--cHHHHHHHHhCCCEEEEEEeccccchhhhhhhcc
Confidence            33467899999999999999987     7899999999999974  4569999999999999999999998754221   


Q ss_pred             -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                             ...+..||.+++++||+++++|+  ++++|.+++++|+ ++++|+|||+.+
T Consensus       128 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lieV~T  182 (183)
T d1q6za3         128 EAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEAL-SAKGPVLIEVST  182 (183)
T ss_dssp             TCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHH-TCSSCEEEEEEB
T ss_pred             cccCcccccCCCccHHHHHHHcCCEEEEEC--CHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence                   12345799999999999999996  8999999999998 578999999974

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.92  E-value=5.1e-26  Score=177.94  Aligned_cols=119  Identities=18%  Similarity=0.186  Sum_probs=100.8

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      ...+.|+||+++|.|+|+++|.+     +++|||++|||+|++  ..++|.||+++++|+++||+||++|++....+   
T Consensus        50 ~~~~~g~mG~glpaAiGa~la~p-----~~~Vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~yg~i~~~q~~~  122 (228)
T d2ez9a3          50 TSNLFATMGVGIPGAIAAKLNYP-----ERQVFNLAGDGGASM--TMQDLATQVQYHLPVINVVFTNCQYGWIKDEQEDT  122 (228)
T ss_dssp             CCCSSCCTTCHHHHHHHHHHHCT-----TSCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHH
T ss_pred             eecccccccccchhhhhhhhhhc-----cceeEeecCCccccc--cchhhhhhccccCceEEEEeccccchhhhhhhhhc
Confidence            33577999999999999999987     789999999999996  45679999999999999999999998754321   


Q ss_pred             -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786          125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC  175 (176)
Q Consensus       125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~  175 (176)
                             .....+||+++|++||+++++|+  ++++|..++++|.. ..++|+|||+.+
T Consensus       123 ~~~~~~~~~l~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~al~~~~p~lIev~v  179 (228)
T d2ez9a3         123 NQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKAIAQHEPVLIDAVI  179 (228)
T ss_dssp             CSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             ccCCcccccccCccHHhhccccccceEEeC--CHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence                   22346799999999999999996  89999999987643 468999999875

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.92  E-value=6e-26  Score=173.23  Aligned_cols=117  Identities=18%  Similarity=0.183  Sum_probs=101.4

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ....|+||+++|.|+|+++|.+     +++||+++|||+|++  ..++|.|+.++++|++++|+|||.|++....+    
T Consensus        50 ~~~~g~mG~~l~~aiGa~la~p-----~~~vi~i~GDG~f~~--~~~el~t~~~~~l~~~iiv~nN~~~~~~~~~~~~~~  122 (192)
T d1ozha3          50 SNGQQTMGVALPWAIGAWLVNP-----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKY  122 (192)
T ss_dssp             CCTTCCTTCHHHHHHHHHHHST-----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHhhcc-----cccceeecccccccc--hhhhHHHHhhhcCceeEEEEcCCCcccccccccccc
Confidence            3467999999999999999987     789999999999996  34569999999999999999999998764332    


Q ss_pred             -----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                           ......||+++|++||+++++|+  +++||.+++++|+ +.++|+|||+.+
T Consensus       123 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~gp~lIeV~v  175 (192)
T d1ozha3         123 QRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM-DVDGPAVVAIPV  175 (192)
T ss_dssp             SSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH-HSSSCEEEEEEB
T ss_pred             CccccCcCCCCCHHHHHHHhccccEEeC--CHHHHHHHHHHHH-HcCCcEEEEEEe
Confidence                 12335799999999999999996  8999999999997 578999999975

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.3e-24  Score=180.65  Aligned_cols=167  Identities=22%  Similarity=0.211  Sum_probs=137.4

Q ss_pred             ChHHHHHHHHcCCCCHHHHhhhhhcCCCCCCCCCCC----CCccccCCcccchhHHHHHHHHHhchhc------CCCcce
Q psy786            9 RTNRSKAWAEAGLFPVSELKNLRKIDSDLEGHPTPR----LNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASYR   78 (176)
Q Consensus         9 ~~~~ya~l~~~G~~~~e~l~~~r~~~~~l~~~~~~~----~~~~~~~~g~~G~~l~~AvG~A~a~~~~------~~~~~~   78 (176)
                      .+.+|++|+..|+++.++|.+||+.++...+++.+.    +++....++++|.+...+++.+.+.+.+      ...+.+
T Consensus        89 s~~lYa~l~~~g~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~  168 (415)
T d2ieaa2          89 SPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQT  168 (415)
T ss_dssp             HHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCC
T ss_pred             hHHHHHHHHHcCCCchhhHHHHhhhccCCCCCCCCCCCCCCCCCcCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCce
Confidence            467999999999999999999999865555444432    3455667788888888777776654321      235678


Q ss_pred             EEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc-cccHHHHHHHhhcCceEEEe-----------
Q psy786           79 TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ-HQTEVYRKRLDAFGFNAVVV-----------  146 (176)
Q Consensus        79 vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~v-----------  146 (176)
                      |+|++|||++++|+.|||++.|++++|.+|++|+|+|.+++++++... ....++.+..++|||++++|           
T Consensus       169 ~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~  248 (415)
T d2ieaa2         169 VYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLR  248 (415)
T ss_dssp             EEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHH
T ss_pred             EEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccChhccccchHHHHHHHHhcCceeEEeecchhhhhhhc
Confidence            999999999999999999999999999999999999999999887543 33578899999999999876           


Q ss_pred             ----------------------------------------------------------cCCCHHHHHHHHHHHHhhCCCc
Q psy786          147 ----------------------------------------------------------DGHDVEHLVKVSSFKLQKAIGC  168 (176)
Q Consensus       147 ----------------------------------------------------------dG~d~~~l~~al~~a~~~~~~P  168 (176)
                                                                                ||+|++++.++++++.+..++|
T Consensus       249 ~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~~~d~P  328 (415)
T d2ieaa2         249 KDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKA  328 (415)
T ss_dssp             HCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTTSTTSCHHHHTTCCBGGGCHHHHHHHHHHHHHCCSSC
T ss_pred             cchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHHHhhhhhhhhhhhhhccCchhhhHHHHHHHHhcCCCc
Confidence                                                                      7899999999999997666789


Q ss_pred             EEEEeee
Q psy786          169 VWIQRGC  175 (176)
Q Consensus       169 ~lI~~~~  175 (176)
                      ++|++..
T Consensus       329 ~vI~a~T  335 (415)
T d2ieaa2         329 TVILAHT  335 (415)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9998763

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.3e-25  Score=174.09  Aligned_cols=118  Identities=18%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      .....++||+++|.|+|+++|.+     +++|||++|||+|++  ..++|.|++++++|+++||+||++|++....+   
T Consensus        58 ~~~~~g~mG~~~~aaiGa~lA~p-----~r~Vv~i~GDGsf~m--~~~EL~Ta~r~~l~i~iiV~nN~~~g~~~~~~~~~  130 (227)
T d1t9ba3          58 TSGGLGTMGYGLPAAIGAQVAKP-----ESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLF  130 (227)
T ss_dssp             CCCSSCCTTCHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHH
T ss_pred             eecccccchhhHHHHHHHHhcCC-----CCeEEEeCCCccccc--chHHHHHHhhcCCceEEEEEecccccchhHHHhhh
Confidence            44578999999999999999987     789999999999996  34569999999999999999999998653221   


Q ss_pred             -------cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 -------LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 -------~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                             .....+||.++|++||+++++|.  +.++|.++|++|+ ..++|+|||+.+
T Consensus       131 ~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lieV~v  185 (227)
T d1t9ba3         131 YEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFV-STKGPVLLEVEV  185 (227)
T ss_dssp             STTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH-HCSSCEEEEEEB
T ss_pred             hccccccccCCCCCHHHHHhhcccceEeeC--CHHHHHHHHHHHH-HCCCCEEEEEEE
Confidence                   22345799999999999999996  8999999999998 578999999975

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.91  E-value=5.3e-25  Score=169.39  Aligned_cols=119  Identities=14%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--  125 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--  125 (176)
                      .....|+||+++|+|+|++++.+     +++|||++|||+|++  ..++|+||+++++|+++||+||++|++....+.  
T Consensus        46 ~~~~~g~mG~~l~aAiGa~la~p-----~~~vv~i~GDGsf~m--~~~eL~Ta~~~~lpi~iiV~NN~~~g~~~~~~~~~  118 (204)
T d1zpda3          46 YEMQWGHIGWSVPAAFGYAVGAP-----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGP  118 (204)
T ss_dssp             ECTTTCCTTTHHHHHHHHHHHCT-----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCG
T ss_pred             cCCCCcccchhhHHHHHHHHhCC-----CCceeccccccceee--eecccchhhhcccccceEEEecccccccceecccc
Confidence            44578999999999999999987     789999999999996  556799999999999999999999998654332  


Q ss_pred             --ccccHHHHHHHh---------hcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          126 --QHQTEVYRKRLD---------AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       126 --~~~~~~~~~~a~---------a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                        ....+||.++++         ++|+++++|+  +++|+.+++++|+...++|+|||+.+
T Consensus       119 ~~~~~~~d~~~~~~~~~~~~~a~~~g~~~~~v~--~~~el~~al~~al~~~~gp~lieV~v  177 (204)
T d1zpda3         119 YNNIKNWDYAGLMEVFNGNGGYDSGAAKGLKAK--TGGELAEAIKVALANTDGPTLIECFI  177 (204)
T ss_dssp             GGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHCCSSCEEEEEEC
T ss_pred             ccccchhhhhhhhhhcCcchhhhccCccEEEec--CHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence              122346666555         4588999996  89999999999986678999999874

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.90  E-value=1.7e-24  Score=165.54  Aligned_cols=118  Identities=16%  Similarity=0.094  Sum_probs=99.2

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc---
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS---  124 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~---  124 (176)
                      ...+.|+||+++|.|+|++++.+     +++|||++|||+|++  ..++|.|+.++++|++++|+||++|++....+   
T Consensus        48 ~~~~~g~mG~~l~~aiGa~la~p-----~~~vv~i~GDG~f~~--~~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~  120 (196)
T d1ovma3          48 VQPLWGSIGYTLAAAFGAQTACP-----NRRVIVLTGDGAAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAE  120 (196)
T ss_dssp             CCTTTCCTTHHHHHHHHHHHHCT-----TSCEEEEEEHHHHHH--HTTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTT
T ss_pred             eCCCCccccccchhhHHHHHhhh-----ccceeccccccccee--ecccccccccccccceEEEEecCccccchhhhccc
Confidence            44578999999999999999987     789999999999996  45679999999999999999999998763221   


Q ss_pred             ---cccccHHHHHHHhhcCc----eEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ---LQHQTEVYRKRLDAFGF----NAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ---~~~~~~~~~~~a~a~G~----~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                         ......|+.+++++||+    ++++|+  +++++.+++++++ ..++|+|||+.+
T Consensus       121 ~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~--~~~el~~al~~a~-~~~gp~lIev~~  175 (196)
T d1ovma3         121 QRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA-HHERLSLIEVML  175 (196)
T ss_dssp             CGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT-TCSSEEEEEEEC
T ss_pred             cccccccccccchhHHhcCccccceeEEEe--cHHHHHHHHHHHH-HCCCcEEEEEEe
Confidence               11234578889999986    577886  8999999999997 578999999874

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.89  E-value=7.4e-24  Score=160.32  Aligned_cols=116  Identities=15%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             ccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcc----
Q psy786           49 DVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTS----  124 (176)
Q Consensus        49 ~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~----  124 (176)
                      ....|+||+++|.|+|++ +.+     +++|++++|||+|++.  .++|.||+++++|++++|+||++|....+..    
T Consensus        53 ~~~~g~mG~~l~~aig~~-a~~-----~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~iiV~NN~g~~~~~q~~~~~~  124 (183)
T d2ji7a3          53 SGTWGVMGIGMGYCVAAA-AVT-----GKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPG  124 (183)
T ss_dssp             CTTTTCTTCHHHHHHHHH-HHH-----CSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCSBTT
T ss_pred             cCCccccccccchhhhhh-cCC-----cceEEEEEcCcchhhc--hhhhhhhhhccccchhhhhhhhhhhhhhhcccccc
Confidence            346799999999999877 455     6799999999999975  3569999999999999999998775432211    


Q ss_pred             ----cccccHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEeee
Q psy786          125 ----LQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQRGC  175 (176)
Q Consensus       125 ----~~~~~~~~~~~a~a~G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~~~  175 (176)
                          .....+||+++|++||+++++|+  ++++|.+++++|+ +.++|+|||+++
T Consensus       125 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~-~~~~p~lIev~i  176 (183)
T d2ji7a3         125 VISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV-ASGKPCLINAMI  176 (183)
T ss_dssp             BCCTTBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHH-HHTSCEEEEEEB
T ss_pred             ccccccccccchhhhhhhcCCcEEEeC--CHHHHHHHHHHHH-hCCCcEEEEEEE
Confidence                12245699999999999999996  8999999999998 468999999975

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.6e-24  Score=164.47  Aligned_cols=123  Identities=15%  Similarity=0.066  Sum_probs=99.6

Q ss_pred             cccCCcccchhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccc--
Q psy786           48 IDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSL--  125 (176)
Q Consensus        48 ~~~~~g~~G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~--  125 (176)
                      .....|+||+++|.|+|+|+|.+. .+++++|||++|||+|++  ..++|+|+.++++|+++||+||++|++....+.  
T Consensus        48 ~~~~~g~mG~~l~~aiG~alaa~~-~~p~~~Vv~i~GDGsf~m--~~~eL~ta~~~~l~i~~iV~nN~~y~~~~~~~~~~  124 (196)
T d1pvda3          48 SQVLWGSIGFTTGATLGAAFAAEE-IDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIEKLIHGPK  124 (196)
T ss_dssp             CCTTTCCTTHHHHHHHHHHHHHHH-HCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHTTSCTT
T ss_pred             ccCCcCcccccccchhHHHHHHHh-cCCCCceeeccCcccccc--ccccccccccccccceEEEEeCCccceeEeeccCc
Confidence            345789999999999999999874 467899999999999986  456799999999999999999999987543221  


Q ss_pred             ----ccccHHHHHHHhhcCc---eEEEecCCCHHHHHHHHHHHHh-hCCCcEEEEeee
Q psy786          126 ----QHQTEVYRKRLDAFGF---NAVVVDGHDVEHLVKVSSFKLQ-KAIGCVWIQRGC  175 (176)
Q Consensus       126 ----~~~~~~~~~~a~a~G~---~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~~  175 (176)
                          ....+||.++|++||.   ++.+|+  +.+|+.++++++.. ..++|+|||+.+
T Consensus       125 ~~~~~~~~~d~~~la~a~G~~~~~~~~v~--~~~el~~al~~~~~~~~~~~~lIeV~i  180 (196)
T d1pvda3         125 AQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFNDNSKIRMIEIML  180 (196)
T ss_dssp             CGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTTSCSSEEEEEEEC
T ss_pred             cccccCCCCCHHHHHHHhCCCCceEEEec--CHHHHHHHHHHHHHhCCCCcEEEEEEC
Confidence                1234689999999984   556785  89999999976642 346899999864

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR PP module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.73  E-value=2e-08  Score=83.45  Aligned_cols=96  Identities=16%  Similarity=0.131  Sum_probs=78.5

Q ss_pred             cceEEEEECCCccC-CchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccc----------------cccHHHHHHHhh
Q psy786           76 SYRTYCLVGDGESA-EGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQ----------------HQTEVYRKRLDA  138 (176)
Q Consensus        76 ~~~vv~~~GDG~~~-~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~----------------~~~~~~~~~a~a  138 (176)
                      ++.||++.|||.+. .|  ...|.-|.+.+.+++++|+||..|++.+.+...                ....|+..++.+
T Consensus       169 k~~V~~~gGDG~~~dIG--~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia~a  246 (447)
T d2c42a2         169 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT  246 (447)
T ss_dssp             CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred             CCcEEEEecCccHhhcC--hHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHHHH
Confidence            46799999999974 44  456999999999999999999999987654321                123588999999


Q ss_pred             cCceEE-Ee-cCCCHHHHHHHHHHHHhhCCCcEEEEee
Q psy786          139 FGFNAV-VV-DGHDVEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       139 ~G~~~~-~v-dG~d~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      +|..++ ++ .+.+.+++.+++++|+ ..+||.+|++.
T Consensus       247 ~g~~YVA~~s~~~~~~~l~kaikeA~-~~~GpS~I~~~  283 (447)
T d2c42a2         247 YGYVYVATVSMGYSKQQFLKVLKEAE-SFPGPSLVIAY  283 (447)
T ss_dssp             TSSSEEEEECTTTCHHHHHHHHHHHH-HSSSCEEEEEE
T ss_pred             CCCceEEEEeCCCCHHHHHHHHHHHH-hCCCCeEEEee
Confidence            999887 66 4689999999999997 57899999875

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.43  E-value=0.0051  Score=44.41  Aligned_cols=103  Identities=11%  Similarity=0.059  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      +.-+|-|.+....      ++.+|++  |=|..+   ...++..|...+.|+|++.-+.........  ......|..++
T Consensus        49 A~~~A~gyar~tg------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~~q~~d~~~~  117 (186)
T d2ihta2          49 AGVAADVLARITG------RPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN--DTHQCLDSVAI  117 (186)
T ss_dssp             HHHHHHHHHHHHC------SCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT--TSTTCCCHHHH
T ss_pred             hHHHHHHHhhccC------Ccceeeccccccccc---hhhhhhHHHHhhccceeeeccCcchhcccc--ccccccccccc
Confidence            3446667776543      3444443  555554   455788899999996666554333222111  11223466788


Q ss_pred             HhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          136 LDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      ++.+--...++.  +++++.+.+++|++    ...||+.|++
T Consensus       118 ~~~~tk~~~~v~--~~~~i~~~l~~A~~~a~s~~~GPv~l~i  157 (186)
T d2ihta2         118 VAPMSKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISL  157 (186)
T ss_dssp             HGGGSSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred             cCCceeeccccC--CchhhhhHHHHHHHHHhcCCCeeEEEEe
Confidence            888876677884  66666665555553    2358999987

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.17  E-value=0.019  Score=41.23  Aligned_cols=105  Identities=11%  Similarity=-0.027  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--cccc---cccHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--TSLQ---HQTEV  131 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--~~~~---~~~~~  131 (176)
                      +.-+|-|.+....      +.++|+ .|-|..+   ...++..|...++|+|++.-+.........  ....   ....+
T Consensus        52 A~~mA~gyar~tg------~~~v~~t~GpG~~N---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~  122 (186)
T d1zpda2          52 CGFSAEGYARAKG------AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY  122 (186)
T ss_dssp             HHHHHHHHHHHHS------CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCH
T ss_pred             eehhhhhhhhccc------cceeEeeccccchh---hhhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhh
Confidence            3446777776543      344444 4444443   456788999999996655543222221111  0111   11234


Q ss_pred             HHHHHhhcCceEEEecCCCH----HHHHHHHHHHHhhCCCcEEEEee
Q psy786          132 YRKRLDAFGFNAVVVDGHDV----EHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       132 ~~~~a~a~G~~~~~vdG~d~----~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ..++++.+--...+++  ++    +.+.+|++.|... ++|+.|++-
T Consensus       123 ~~~~~~~vtk~~~~v~--~~~~~~~~i~~A~~~A~~~-~~PV~l~iP  166 (186)
T d1zpda2         123 QLEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALRE-KKPVYLEIA  166 (186)
T ss_dssp             HHHHHGGGCSCEEEEC--SGGGHHHHHHHHHHHHHHH-TCCEEEEEE
T ss_pred             hhhccCCceeeeeEcC--CHHHHHHHHHHHHHHHhhC-CCCEEEECC
Confidence            5678888866666774  44    4556666666533 579999873

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=96.08  E-value=0.068  Score=38.57  Aligned_cols=112  Identities=10%  Similarity=0.007  Sum_probs=73.0

Q ss_pred             cCCcccchh-HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc
Q psy786           50 VGTGSLGQG-LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        50 ~~~g~~G~~-l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      ...|.--+. +..|.|+++...     -.+++++.  ..|.. ...+.+..+...++|+ ++|....++........-+.
T Consensus        67 i~~GIaEqnm~~iAaGla~~~g-----~~p~~~t~--~~F~~-r~~~~ir~~~~~~~~v-~~v~~~~g~~~g~dG~THq~  137 (190)
T d1r9ja1          67 IRFGVREHAMCAILNGLDAHDG-----IIPFGGTF--LNFIG-YALGAVRLAAISHHRV-IYVATHDSIGVGEDGPTHQP  137 (190)
T ss_dssp             EECCSCHHHHHHHHHHHHHHSS-----CEEEEEEE--GGGGG-GGHHHHHHHHHHTCCC-EEEEECCSGGGCTTCTTTCC
T ss_pred             eeeccchhhHHHHHHHHHHcCC-----cceEEecc--hhhhc-cchHHHHHhcccCCce-EEEEecCccccCCCCcchhH
Confidence            346777765 677888887543     23444444  34433 5667788888889985 55666666554332222233


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .+|++ +.+++ ++.++.=  .|..|+..+++.|++..++|+.|-.
T Consensus       138 ieDla-~~R~iPn~~V~~P--aD~~E~~~al~~a~~~~~gP~yiRl  180 (190)
T d1r9ja1         138 VELVA-ALRAMPNLQVIRP--SDQTETSGAWAVALSSIHTPTVLCL  180 (190)
T ss_dssp             SSHHH-HHHHSTTCEEECC--SSHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             HHHHH-HHHhcCCEEEEec--CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence            45666 56666 8887753  3899999999999877789988753

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.06  E-value=0.014  Score=41.87  Aligned_cols=103  Identities=17%  Similarity=0.117  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~  134 (176)
                      .+.-+|-|.+....      ++.+|++  |=|..+   ...++..|...+.|+|++.-+.........   .....|...
T Consensus        53 ~A~~~A~gyar~tg------~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~isg~~~~~~~~~~---~~q~~d~~~  120 (181)
T d1ozha2          53 NAAFMAAAVGRITG------KAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQ---VHQSMDTVA  120 (181)
T ss_dssp             HHHHHHHHHHHHHS------SCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC---------CCCHHH
T ss_pred             HHHHHHHHHHHhcC------Cccceeeccchhhhh---hhhhHHHHhhcCCceeeeecccchhhcccc---ccccccccc
Confidence            33446667776643      3444444  444554   345799999999996655544333222211   112235677


Q ss_pred             HHhhcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          135 RLDAFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       135 ~a~a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +++.+--...++.  +++++.+.+++|++    ...||+.|++
T Consensus       121 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~i  161 (181)
T d1ozha2         121 MFSPVTKYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSL  161 (181)
T ss_dssp             HHGGGCSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             cccccchheeccC--chhHHHHHHHHHHHHHhhCCCccEEEEc
Confidence            8888877777884  55555555555543    3358999987

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.015  Score=41.52  Aligned_cols=110  Identities=10%  Similarity=-0.019  Sum_probs=60.0

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccC--cc---cccccH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEP--TS---LQHQTE  130 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~--~~---~~~~~~  130 (176)
                      ..+.-+|-|.+...+     ...+++..|-|..+   ...++..|...++|+|++.-+.........  ..   ......
T Consensus        51 ~~A~~~A~gyar~t~-----~~~v~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~  122 (180)
T d1pvda2          51 LNAAYAADGYARIKG-----MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFT  122 (180)
T ss_dssp             HHHHHHHHHHHHHHS-----CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSS
T ss_pred             chhhHHHHHHhhccC-----Cceeeeccccccch---hhHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchh
Confidence            334446777776543     22344445655443   456788999999996655434322211111  00   111123


Q ss_pred             HHHHHHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEee
Q psy786          131 VYRKRLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       131 ~~~~~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++.++++.+=-...++. ..+ ++.+.+|++.|.. .++|+.|++-
T Consensus       123 ~~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~-~~gPv~i~iP  167 (180)
T d1pvda2         123 VFHRMSANISETTAMITDIATAPAEIDRCIRTTYV-TQRPVYLGLP  167 (180)
T ss_dssp             HHHHHHGGGCSEEEECCCTTTHHHHHHHHHHHHHH-HTSCEEEEEE
T ss_pred             HHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhC-CCCCEEEECC
Confidence            45667777643344553 333 3567777777764 4699999874

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=95.97  E-value=0.01  Score=42.76  Aligned_cols=105  Identities=14%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             chhHHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHH
Q psy786           56 GQGLSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYR  133 (176)
Q Consensus        56 G~~l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~  133 (176)
                      ..+.-+|-|.+....      ++.+|+  .|-|..+   ...++..|...+.|+|++.-+........   ..+...|..
T Consensus        53 ~~A~~~A~gyar~tg------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~---~~~Q~~d~~  120 (184)
T d2djia2          53 EVGAMAAVMQSKFGG------NLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNM---DAFQELNQN  120 (184)
T ss_dssp             HHHHHHHHHHHHTTC------CCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEESCGGGTTT---TCTTCCCCH
T ss_pred             cchHHHHHhhhhccc------Ccceeeccccccccc---hhHhHHHHHHhCccceeecccchhhHhhc---Ccccccccc
Confidence            334456777766543      344444  4555555   34578999999999665554422222111   111122445


Q ss_pred             HHHhhcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEEee
Q psy786          134 KRLDAFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQRG  174 (176)
Q Consensus       134 ~~a~a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~  174 (176)
                      .+++.+--...+|+  +++++.+.+++|++   ..++|+.|++-
T Consensus       121 ~~~~~itk~~~~v~--~~~~~~~~~~~A~~~a~~~rGPv~i~iP  162 (184)
T d2djia2         121 PMYDHIAVYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLEVP  162 (184)
T ss_dssp             HHHHTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             cchhhhcceeeccc--cchhhHHHHHHHHHHHhCCCCCEEEEeC
Confidence            67787765566775  55555555554443   24699999873

>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.03  Score=40.72  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=67.9

Q ss_pred             CCcccchh-HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCccccccc
Q psy786           51 GTGSLGQG-LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        51 ~~g~~G~~-l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      ..|.--++ +++|.|+|+..+     -.+++...   .+......+.+..+...+.+++++ +...+.+........++.
T Consensus        74 ~~GIaEq~M~~iAaGlA~~g~-----~~p~~stf---~~f~~~~~~~ir~~~~~~~~~v~v-~~h~g~~~g~dG~THq~i  144 (195)
T d2r8oa1          74 HYGVREFGMTAIANGISLHGG-----FLPYTSTF---LMFVEYARNAVRMAALMKQRQVMV-YTHDSIGLGEDGPTHQPV  144 (195)
T ss_dssp             ECCSCHHHHHHHHHHHHHHSS-----CEEEEEEE---GGGGGTTHHHHHHHHHTTCCCEEE-EECCSGGGCTTCTTTCCS
T ss_pred             eeeeehhhHHHHHHHHHhhCC-----ceEEeecc---eeeeccccchhhccccccccceee-eccccccccccchhhHHH
Confidence            45655544 456778876432     12333332   333235677788888888886665 444454433222222334


Q ss_pred             HHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          130 EVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       130 ~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +|++ +.|+. ++.+++=  .|..|+..+++.|+++.++|+.|-.
T Consensus       145 EDia-~lR~iPn~~v~~P--~D~~E~~~a~~~a~~~~~gP~ylRl  186 (195)
T d2r8oa1         145 EQVA-SLRVTPNMSTWRP--CDQVESAVAWKYGVERQDGPTALIL  186 (195)
T ss_dssp             SHHH-HHHTSTTCEEECC--SSHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             HHHH-HHHhhCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence            6666 56666 8888753  3899999999999877789987753

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=95.93  E-value=0.0058  Score=44.15  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE--ECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL--VGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~--~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~  134 (176)
                      .+.-+|-|.+.+..      ++.+|+  .|=|..+   ...++..|...+.|+|++.-+-.. .............|..+
T Consensus        52 ~A~~~A~gyar~tg------~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~-~~~~~~~~~~q~~d~~~  121 (188)
T d2ji7a2          52 HAGYAASIAGYIEG------KPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSER-EIVDLQQGDYEEMDQMN  121 (188)
T ss_dssp             HHHHHHHHHHHHHS------SCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCH-HHHHTTCCCTTCCCHHH
T ss_pred             hhhhHHHHHHhhhc------ccceeeccccccccc---cchhHHHHHHhcccceEEeccCch-hhhcccccccceeeeec
Confidence            34456777777653      334443  4444443   456788899999996655433211 11111111112235677


Q ss_pred             HHhhcCceEEEecCCCHHHH----HHHHHHHHhhCCCcEEEEe
Q psy786          135 RLDAFGFNAVVVDGHDVEHL----VKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       135 ~a~a~G~~~~~vdG~d~~~l----~~al~~a~~~~~~P~lI~~  173 (176)
                      +++.+--...++.  +++++    .+|++.|+....||+.|++
T Consensus       122 ~~~~~tk~~~~v~--~~~~i~~~~~~A~~~a~~~~~GPV~l~i  162 (188)
T d2ji7a2         122 VARPHCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDL  162 (188)
T ss_dssp             HTGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             ccCCcchhhhccc--cccccHHHHHHHHHHHhCCCCceEEEEc
Confidence            8888876677774  55554    4455555433458999986

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.02  Score=40.71  Aligned_cols=103  Identities=15%  Similarity=0.021  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR  135 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~  135 (176)
                      +.-+|-|.+....      ++.+|++  |=|..+   ...++..|...++|+|++.-+........   ......|..++
T Consensus        54 A~~~A~gyar~tg------~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~l  121 (175)
T d1t9ba2          54 AGHMAEGYARASG------KPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT---DAFQEADVVGI  121 (175)
T ss_dssp             HHHHHHHHHHHHS------SCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS---CCTTCCCHHHH
T ss_pred             HHHHHHHHHHHhC------CceEEEEecCcHHHH---HHHHHHHHHHcCCCEEEEecCCChhhcCC---CccccccHhHh
Confidence            3446777776543      3455554  445444   45579999999999655544322222211   11112366778


Q ss_pred             HhhcCceEEEecCCCHHH----HHHHHHHHHhhCCCcEEEEee
Q psy786          136 LDAFGFNAVVVDGHDVEH----LVKVSSFKLQKAIGCVWIQRG  174 (176)
Q Consensus       136 a~a~G~~~~~vdG~d~~~----l~~al~~a~~~~~~P~lI~~~  174 (176)
                      ++.+--...+++  ++++    +.+|++.|.....||+.|++-
T Consensus       122 ~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPv~l~iP  162 (175)
T d1t9ba2         122 SRSCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP  162 (175)
T ss_dssp             TGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred             cccceeeeEecC--CHHHHHHHHHHHHHHHhcCCCccEEEEcC
Confidence            888865566774  4444    555555554334689999863

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=95.80  E-value=0.019  Score=41.56  Aligned_cols=103  Identities=15%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHhh
Q psy786           59 LSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLDA  138 (176)
Q Consensus        59 l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~a  138 (176)
                      .-+|-|.+.+...    -..+++..|-|.++   ...++..|..-+.|+|++.-+........   ..+...|..++.+.
T Consensus        63 ~~mAdgyar~tg~----~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvlvi~g~~~~~~~~~---~~~q~~d~~~~~~~  132 (195)
T d1ybha2          63 VFAAEGYARSSGK----PGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTRS  132 (195)
T ss_dssp             HHHHHHHHHHHSS----CEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT---TCTTCCCHHHHHGG
T ss_pred             HHHHHHHHHHHCC----CeEEEEecChHHHH---HHHHHHHHHHcCCCEEEEecCCcHHHhcc---Ccccccchhhhhcc
Confidence            3467777776531    12334444556665   34579999999999666655432222111   11122345667777


Q ss_pred             cCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          139 FGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       139 ~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      +--...++.  +++++.+++++|+.    ...||+.|++
T Consensus       133 ~tk~~~~v~--~~~~~~~~~~~A~~~a~~~r~GPV~l~i  169 (195)
T d1ybha2         133 ITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDV  169 (195)
T ss_dssp             GSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEE
T ss_pred             cccchhhcc--hHhhcchHHHHHHHHHhcCCCCcEEEEC
Confidence            755556664  56666655655553    2358999987

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=95.55  E-value=0.015  Score=41.41  Aligned_cols=104  Identities=15%  Similarity=0.037  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEE--CCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHH
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLV--GDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK  134 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~--GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~  134 (176)
                      .+.-+|-|.+....      ++.+|++  |-|.++   ...++..|...+.|+|++.-+.........   .+...|..+
T Consensus        53 ~A~~~A~gyar~tg------k~gv~~~t~GpG~~N---~~~gl~~A~~~~~P~l~i~g~~~~~~~~~~---~~Q~~d~~~  120 (174)
T d2ez9a2          53 VGAMAAAADAKLTG------KIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNMD---TFQEMNENP  120 (174)
T ss_dssp             HHHHHHHHHHHHHS------SCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTSC---CTTCCCCHH
T ss_pred             hhHHHHHHHHhhcC------ceeEEeecccccccc---hhhhHHHHHhcCccceeeeccccccccCcc---ccccchhhh
Confidence            33446667766543      3444444  555555   345788999999996655544222222111   111123455


Q ss_pred             HHhhcCceEEEec-CCC-HHHHHHHHHHHHhhCCCcEEEEe
Q psy786          135 RLDAFGFNAVVVD-GHD-VEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       135 ~a~a~G~~~~~vd-G~d-~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      +++.+--...++. -.+ ++.+.+|++.|.. .+||++|++
T Consensus       121 ~~~~itk~~~~v~~~~~~~~~i~~A~~~A~~-~pGPv~l~i  160 (174)
T d2ez9a2         121 IYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQI  160 (174)
T ss_dssp             HHTTTCSEEEECCCSTTHHHHHHHHHHHHHH-HTSEEEEEE
T ss_pred             hhccccccccccccHHHHHHHHHHHHHHHhC-CCCCEEEEe
Confidence            6776654455664 112 3456666666653 369999987

>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.06  Score=39.04  Aligned_cols=111  Identities=11%  Similarity=0.043  Sum_probs=65.6

Q ss_pred             Ccccch-hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccH
Q psy786           52 TGSLGQ-GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE  130 (176)
Q Consensus        52 ~g~~G~-~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~  130 (176)
                      .|.--+ .+++|.|+|+.-+     .-+.++. .=..|.. ...+.+..++..++|+ ++|....++.........++.+
T Consensus        77 ~GIaEq~m~~iaaGlA~~G~-----~~~p~~~-t~~~f~~-~~~~~~~~~~~~~~~v-~~v~t~~g~~~g~dG~THq~ie  148 (197)
T d1gpua2          77 YGIREHAMGAIMNGISAFGA-----NYKPYGG-TFLNFVS-YAAGAVRLSALSGHPV-IWVATHDSIGVGEDGPTHQPIE  148 (197)
T ss_dssp             CCSCHHHHHHHHHHHHHHCT-----TCEEEEE-EEHHHHG-GGHHHHHHHHHHTCCC-EEEEECCSGGGCTTCTTTCCSS
T ss_pred             cccchhhHHHHHHHHHHcCC-----ceeEEEE-eehhhhh-hhHHHHHHhhhcCCce-EEEEecccccccccccchhhHH
Confidence            444433 3467778887533     1122222 1233433 3455677777889995 4555556655432222223345


Q ss_pred             HHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          131 VYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       131 ~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      |++ +.++. ++.+++=  .|..|+.++++.|++..++|+.|-.
T Consensus       149 Dia-~~r~iPn~~v~~P--aD~~e~~~a~~~a~~~~~gP~yiRl  189 (197)
T d1gpua2         149 TLA-HFRSLPNIQVWRP--ADGNEVSAAYKNSLESKHTPSIIAL  189 (197)
T ss_dssp             HHH-HHHTSSSCEEECC--CSHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred             HHH-HHhcCCCcEEEec--CCHHHHHHHHHHHHHcCCCCEEEEe
Confidence            665 56666 8887743  3889999999999877789988753

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=94.81  E-value=0.011  Score=42.39  Aligned_cols=105  Identities=10%  Similarity=-0.072  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      +.-+|-|.+.....    -..+++..|-|..+   ...+|..|...+.|+|++.-+-........  ..+...|..++++
T Consensus        49 A~~mA~gyar~tgk----~~v~~~~~GpG~~n---~~~gl~~A~~~~~Pvlvi~g~~~~~~~g~~--~~~q~~D~~~~~~  119 (180)
T d1q6za2          49 VVGIADGYAQASRK----PAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVE--ALLTNVDAANLPR  119 (180)
T ss_dssp             HHHHHHHHHHHHTS----CEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTT--CTTCCTTGGGSST
T ss_pred             HHHHHHHHhhhccC----cceEEecccccccc---ccceeHhhhhcccceeeecccccccccccc--ccchhhheeeccc
Confidence            34467777776531    23455555666665   345799999999996666543221111111  1111234445566


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh----hCCCcEEEEe
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ----KAIGCVWIQR  173 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~----~~~~P~lI~~  173 (176)
                      .+=-...++.  +++++.+.+++|++    ...||+.|++
T Consensus       120 ~~tK~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPv~l~i  157 (180)
T d1q6za2         120 PLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSV  157 (180)
T ss_dssp             TSCSCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEE
T ss_pred             ccccccccCC--CHHHHHHHHHHHHHHHhcCCCccEEEEc
Confidence            6533345664  66666666666653    2357999987

>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.73  E-value=0.12  Score=37.32  Aligned_cols=113  Identities=9%  Similarity=0.020  Sum_probs=68.4

Q ss_pred             cCCcccch-hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccc
Q psy786           50 VGTGSLGQ-GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        50 ~~~g~~G~-~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      ...|.--+ .+++|.|+|+...    .-.+++...  ..|.. .....+..++..++|++ +|....+++.......-+.
T Consensus        70 i~~GIaEq~m~~iAaGlA~~~~----G~~p~~~tf--~~F~~-~~~~~~~~~~~~~~~v~-~v~~~~g~~~g~dG~TH~~  141 (192)
T d1itza2          70 VRFGVREHGMGAICNGIALHSP----GFVPYCATF--FVFTD-YMRGAMRISALSEAGVI-YVMTHDSIGLGEDGPTHQP  141 (192)
T ss_dssp             CCCCSCHHHHHHHHHHHHTTCT----TCEEEEEEE--GGGHH-HHHHHHHHHHHHTCCCE-EEEECCSGGGCTTCTTTCC
T ss_pred             ceeceecchHHHHHHHHHHhcC----CCEEEEEEE--hhhhh-hccchhhhhccccccce-EEEecCCcccccCCcccHH
Confidence            34454433 3556778887422    123344333  44543 24455777778899954 5555566554432222233


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .+|++ +.+++ ++.++.-  .|..|+..+++.|+++.++|+.|-.
T Consensus       142 ieDia-~~r~iPn~~v~~P--~d~~e~~~~~~~a~~~~~gP~yiRl  184 (192)
T d1itza2         142 IEHLV-SFRAMPNILMLRP--ADGNETAGAYKVAVLNRKRPSILAL  184 (192)
T ss_dssp             SSHHH-HHHSSSSCEEECC--CSHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             HHHHH-HHhCcCCceEEec--CCHHHHHHHHHHHHHcCCCCEEEEE
Confidence            45665 56666 8888854  3899999999999876789987643

>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.6  Score=33.65  Aligned_cols=101  Identities=9%  Similarity=-0.022  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhh--------cCCCcEEEEEecCCCccccCcccccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASY--------YKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~--------~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      .-++.|+|+|++-.      ++++ .+-=..|..-.+-+-++.+++        ++.|++++..--...+....+..+  
T Consensus        77 ~~~G~a~G~A~~G~------rPiv-e~~f~dF~~~a~dqi~n~~ak~~~~~~g~~~~~~vv~~~~~g~~~~g~~~HSq--  147 (203)
T d2bfdb1          77 GIVGFGIGIAVTGA------TAIA-EIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQ--  147 (203)
T ss_dssp             HHHHHHHHHHHTTC------CEEE-ECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSC--
T ss_pred             eecchhhhhhhccc------ceEE-EEEehhhhhhhHHHHHHHHhhhhcccCCccccccceeeeccccCccccccccc--
Confidence            34567999998643      3444 444445543233333455554        345555554433332322222211  


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                        ++..++..+ |++++.-.  ++.+.+..++.|+ +.+.|+++
T Consensus       148 --~~~~~~~~~PGl~Vv~Ps--~p~Da~gll~~ai-~~~~Pvi~  186 (203)
T d2bfdb1         148 --SPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCI-EDKNPCIF  186 (203)
T ss_dssp             --CCHHHHHTSTTCEEECCS--SHHHHHHHHHHHH-HSSSCEEE
T ss_pred             --cHHHHHcCCCCcEEEecC--CHHHHHHHHHHHH-hCCCcEEE
Confidence              223344444 88888654  8999999999998 56788764

>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=93.42  E-value=0.77  Score=33.06  Aligned_cols=98  Identities=9%  Similarity=-0.053  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHH-HHhh--------hcCCCcEEEEEecCCCccccCcccccc
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEAL-HFAS--------YYKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal-~~a~--------~~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      -++.|+|+|+.-.       +.|+.+==..|.. ..++.+ +.++        +++.|+++.... ..+.-.+++.   +
T Consensus        64 ~vG~A~GlA~~G~-------rPvve~~~~df~~-~a~dqi~n~~ak~~~~~~~~~~~p~vir~~~-g~~~~~g~~H---s  131 (204)
T d1qs0b1          64 IVGTAVGMGAYGL-------RPVVEIQFADYFY-PASDQIVSEMARLRYRSAGEFIAPLTLRMPC-GGGIYGGQTH---S  131 (204)
T ss_dssp             HHHHHHHHHHHTC-------EEEEECSCGGGCG-GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEE-CCSSSCCSSS---S
T ss_pred             ehhHHHHHhcCCC-------cEEEEEEecchhh-HHHHHHHHHHHHhhcccccCcccceEEEcCc-ccccCccccc---c
Confidence            3667899998643       3444433333433 234444 5554        445675444333 2221112211   1


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      ..+ ..+++.. |++++.=  .|+.+.+..++.|+ +.+.|+++
T Consensus       132 ~~~-~s~~~~iPgl~Vv~P--s~~~da~~ll~~a~-~~~~Pvi~  171 (204)
T d1qs0b1         132 QSP-EAMFTQVCGLRTVMP--SNPYDAKGLLIASI-ECDDPVIF  171 (204)
T ss_dssp             CCC-HHHHTTSTTCEEECC--CSHHHHHHHHHHHH-HSSSCEEE
T ss_pred             cCH-HHHHhcCCCcEEEee--CCHHHHHHHHHHHH-hCCCcEEE
Confidence            122 3455555 8887743  38999999999998 57889765

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=93.39  E-value=0.33  Score=36.28  Aligned_cols=101  Identities=8%  Similarity=-0.076  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCccccCcccccccHHHHHHHh
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD  137 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~~~~~~~~~~~~~~~a~  137 (176)
                      ++..++|++++-       .++.+.+.-.++.  ...|.|..+...++|++++|++...-.-...+.  ....|+. .++
T Consensus        66 A~~~~~Ga~~aG-------~r~~t~ts~~Gl~--~m~e~l~~a~~~~~P~V~~v~~r~~~~~~~~~~--~~q~d~~-~~~  133 (257)
T d2c42a1          66 AAGAVHGALAAG-------ALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHALSIF--GDHQDIY-AAR  133 (257)
T ss_dssp             HHHHHHHHHHTT-------CCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSSBCCS--CCSHHHH-TTT
T ss_pred             hHHHHHHHHhcC-------CCeEEEecchHHH--HHHHHHHHHHhcCCceEEEEEecCCCCCCCccc--cchHHHH-HHH
Confidence            466788888763       3566666555554  467889999999999777776633322111111  1123433 567


Q ss_pred             hcCceEEEecCCCHHHHHHHHHHHHh---hCCCcEEEE
Q psy786          138 AFGFNAVVVDGHDVEHLVKVSSFKLQ---KAIGCVWIQ  172 (176)
Q Consensus       138 a~G~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~  172 (176)
                      ..||..+...  |++|..+-...|.+   +.+.|+++-
T Consensus       134 ~~g~~~l~~~--s~QEa~d~~~~A~~lae~~~~Pv~~~  169 (257)
T d2c42a1         134 QTGFAMLASS--SVQEAHDMALVAHLAAIESNVPFMHF  169 (257)
T ss_dssp             TSSCEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             hcceEEEecC--CHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            7899887764  88887777666653   346798763

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=93.28  E-value=0.26  Score=34.40  Aligned_cols=107  Identities=11%  Similarity=0.008  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhhcCCCcEEEEEecCCCcccc-----CcccccccHHH
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSE-----PTSLQHQTEVY  132 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~~~lp~liiV~~nn~~~~~~-----~~~~~~~~~~~  132 (176)
                      +.-+|-|.+...+     ...|++..|-|..+   ...++..|...++|+|++.-+........     +........++
T Consensus        53 A~~~A~gyar~t~-----~~~v~~t~GpG~~n---~~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~  124 (178)
T d1ovma2          53 ASYAADGYARCKG-----FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHF  124 (178)
T ss_dssp             HHHHHHHHHHHHS-----CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHH
T ss_pred             hHHHHHHHHhcCC-----CceEEeeccccccc---cchhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhc
Confidence            3446667776543     12344445655554   34578899999999655543321111100     00001112466


Q ss_pred             HHHHhhcCceEEEec-CCCHHHHHHHHHHHHhhCCCcEEEEe
Q psy786          133 RKRLDAFGFNAVVVD-GHDVEHLVKVSSFKLQKAIGCVWIQR  173 (176)
Q Consensus       133 ~~~a~a~G~~~~~vd-G~d~~~l~~al~~a~~~~~~P~lI~~  173 (176)
                      .++++.+--....++ -++..++.+++.++. ..++|+.|++
T Consensus       125 ~~~~~~~tk~~~~v~~~~~~~~~~~~~~~a~-~~~~Pv~i~i  165 (178)
T d1ovma2         125 YHMSEPITVAQAVLTEQNACYEIDRVLTTML-RERRPGYLML  165 (178)
T ss_dssp             HHHTGGGCSEEEECCTTTHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred             cccccccceeEEEeCcHHHHHHHHHHHHHHH-hCCCCEEEEE
Confidence            777777755455664 233445555555554 3468998876

>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.65  E-value=0.97  Score=32.08  Aligned_cols=99  Identities=15%  Similarity=-0.028  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEE-ECCCccCCchHHHHHHHhhh--------cCCCcEEEEEecCCCccccCccccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCL-VGDGESAEGSIWEALHFASY--------YKLDNLCVIFDINRLGQSEPTSLQH  127 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~-~GDG~~~~G~~~eal~~a~~--------~~lp~liiV~~nn~~~~~~~~~~~~  127 (176)
                      ..++.|+|+|+.-.      ++++.+ ..|-.+.  .+-|-.+.++.        ++.|+++-+-. . .+....++.  
T Consensus        66 ~~~G~a~GlA~~G~------rPive~~~~df~~~--a~dQi~n~~ak~~~~s~g~~~~p~vir~~~-G-~~~~gg~~H--  133 (191)
T d1ik6a1          66 GILGFAMGMAMAGL------KPVAEIQFVDFIWL--GADELLNHIAKLRYRSGGNYKAPLVVRTPV-G-SGTRGGLYH--  133 (191)
T ss_dssp             HHHHHHHHHHHTTC------EEEEECCCC----C--CHHHHHHHHHHHHC------CCCCEEEEEE-C-C----------
T ss_pred             HHHHHHHHHHHhcC------ceEEEEEecchhHH--HHHHHHHHHHHHHHhcCCccccccceeecc-c-CCCCCcccc--
Confidence            34667899888643      344433 4455543  23333454443        46775544433 2 222211111  


Q ss_pred             ccHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          128 QTEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       128 ~~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                       ..+...+++.. |++++.-.  |+.+.+..++.|+ +.+.|+++
T Consensus       134 -s~~~~a~~~~iPgl~Vv~Ps--~p~da~~ll~~al-~~~~Pv~~  174 (191)
T d1ik6a1         134 -SNSPEAIFVHTPGLVVVMPS--TPYNAKGLLKAAI-RGDDPVVF  174 (191)
T ss_dssp             ----HHHHHHTCTTCEEECCC--SHHHHHHHHHHHH-HSSSCEEE
T ss_pred             -cCCHHHHHHHhhcccEEecC--CHHHHHHHHHHHH-hCCCcEEE
Confidence             22344556655 88888554  8999999999998 56789775

>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: E1-beta subunit of pyruvate dehydrogenase, Pyr module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=1  Score=31.96  Aligned_cols=100  Identities=13%  Similarity=0.066  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhh--------hcCCCcEEEEEecCCCccccCcccccc
Q psy786           57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFAS--------YYKLDNLCVIFDINRLGQSEPTSLQHQ  128 (176)
Q Consensus        57 ~~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~--------~~~lp~liiV~~nn~~~~~~~~~~~~~  128 (176)
                      ..++.|+|+|++-.       +.|+.+==..|..-.+-+-++.++        ++++|+++-.-...+++... +. .  
T Consensus        62 ~~~G~a~G~A~~G~-------rPive~~~~df~~~a~dqi~n~~ak~~~~~~g~~~~pvvir~~~g~~~g~g~-~H-s--  130 (192)
T d2ozlb1          62 GFAGIAVGAAMAGL-------RPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAA-QH-S--  130 (192)
T ss_dssp             HHHHHHHHHHHTTC-------EEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCG-GG-C--
T ss_pred             HHHHHHHHHHhcCC-------ceEEEEEeccchhhhHHHHHhhhhhhhhhhCCcccceEEEEeccCCCCCccc-cc-c--
Confidence            34667889988532       344433333444322333345554        36688554443333332221 11 1  


Q ss_pred             cHHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEE
Q psy786          129 TEVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWI  171 (176)
Q Consensus       129 ~~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI  171 (176)
                      . ++..++..+ |++++.=  .++.+.+..++.|+ +.+.|+++
T Consensus       131 ~-~~~~~~~~~PGl~Vv~P--s~p~da~gll~~Ai-~~~~Pvi~  170 (192)
T d2ozlb1         131 Q-CFAAWYGHCPGLKVVSP--WNSEDAKGLIKSAI-RDNNPVVV  170 (192)
T ss_dssp             C-CCHHHHHTSTTCEEECC--CSHHHHHHHHHHHH-HSSSCEEE
T ss_pred             c-chHHhhccCCceEEEec--CCHHHHHHHHHHHH-hCCCCEEE
Confidence            1 123344444 8888754  38999999999998 57788764

>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Branched-chain alpha-keto acid dehydrogenase, Pyr module
species: Thermus thermophilus [TaxId: 274]

Probab=89.26  E-value=2.5  Score=29.53  Aligned_cols=36  Identities=11%  Similarity=0.020  Sum_probs=28.5

Q ss_pred             HHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEEEE
Q psy786          134 KRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQ  172 (176)
Q Consensus       134 ~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~  172 (176)
                      .+++++ |++++.-.  |+.+.+..++.|+ +.++|++|-
T Consensus       134 ~~~~~iPgl~V~~Ps--~~~d~~~~l~~a~-~~~~Pv~i~  170 (186)
T d1umdb1         134 AHFVHTAGLKVVAVS--TPYDAKGLLKAAI-RDEDPVVFL  170 (186)
T ss_dssp             HHHHTSTTCEEEECC--SHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             HHhhhccceeeeecC--CHHHHHHHHHHHH-hCCCcEEEE
Confidence            455555 99988664  8999999999998 578898764

>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.77  E-value=2.9  Score=29.63  Aligned_cols=100  Identities=9%  Similarity=-0.079  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHhchhcCCCcceEEEEECCCccCCchHHHHHHHhhh--------cCCCcEEEEEecCCCccccCccccccc
Q psy786           58 GLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASY--------YKLDNLCVIFDINRLGQSEPTSLQHQT  129 (176)
Q Consensus        58 ~l~~AvG~A~a~~~~~~~~~~vv~~~GDG~~~~G~~~eal~~a~~--------~~lp~liiV~~nn~~~~~~~~~~~~~~  129 (176)
                      -++.|+|+|++-       .+.|+.+==.+|..-.+-+-++.|++        ++.|+++-...-.+++.. ++..+   
T Consensus        62 ~~G~a~G~Al~G-------~rpIve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g-~~HSq---  130 (192)
T d1w85b1          62 IGGLAIGLALQG-------FRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTP-ELHSD---  130 (192)
T ss_dssp             HHHHHHHHHHTT-------CEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCC-TTSSC---
T ss_pred             hHHHHHHHHhcc-------CceEEEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCc-ccccc---
Confidence            356799999853       34555555555543223333355553        478866655544444332 22222   


Q ss_pred             HHHHHHHhhc-CceEEEecCCCHHHHHHHHHHHHhhCCCcEE-EE
Q psy786          130 EVYRKRLDAF-GFNAVVVDGHDVEHLVKVSSFKLQKAIGCVW-IQ  172 (176)
Q Consensus       130 ~~~~~~a~a~-G~~~~~vdG~d~~~l~~al~~a~~~~~~P~l-I~  172 (176)
                       ++..++... |++++.=  .++.+.+..++.|+ +.+.|++ +|
T Consensus       131 -s~e~~f~~~PGlkVv~P--s~p~Da~gll~~Ai-~~~~Pvi~~E  171 (192)
T d1w85b1         131 -SLEGLVAQQPGLKVVIP--STPYDAKGLLISAI-RDNDPVIFLE  171 (192)
T ss_dssp             -CCHHHHTTSTTCEEECC--SSHHHHHHHHHHHH-HSSSCEEEEE
T ss_pred             -CHHHHhhcCCCeeEEee--CCHHHHHHHHHHHH-hCCCCEEEEE
Confidence             223344444 8887754  38999999999998 5677865 44