Psyllid ID: psy7890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190------
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
cccccccccEEEccccccEEEEEEccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccHHHHcccEEEEEc
cccccEEEEHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHEcHHHHHHHHHHHHHcccEEEEccccccEEEEEEcccccccccHHHHHHccccEEEEEc
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALdfgsggwwfeskssHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAygarltgagwcisqDAHLVNIMAWVqsqprwcisqDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLlenlnenvvvvwc
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQvllenlnenvvvvWC
*****KFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDIS******QLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVW*
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
*LDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLDTVKFSFEVETKLSSVVVNALDFGSGVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGWCISQDAHLVNIMAWVQSQPRWCISQDAHLVNIMAWVQSQPRYRLSQVLLENLNENVVVVWC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query196 2.2.26 [Sep-21-2011]
Q9SEE5496 Galactokinase OS=Arabidop yes N/A 0.413 0.163 0.475 2e-14
Q5R6J8458 N-acetylgalactosamine kin yes N/A 0.382 0.163 0.480 1e-11
Q01415458 N-acetylgalactosamine kin yes N/A 0.382 0.163 0.480 1e-11
Q5XIG6458 N-acetylgalactosamine kin yes N/A 0.382 0.163 0.480 2e-11
Q68FH4458 N-acetylgalactosamine kin yes N/A 0.382 0.163 0.480 2e-11
Q54DN6501 Galactokinase OS=Dictyost yes N/A 0.392 0.153 0.373 6e-10
P04385528 Galactokinase OS=Saccharo yes N/A 0.382 0.142 0.376 5e-07
O42821504 Galactokinase OS=Candida N/A N/A 0.367 0.142 0.375 1e-06
Q8XKP9387 Galactokinase OS=Clostrid yes N/A 0.403 0.204 0.352 2e-06
Q0TQU5387 Galactokinase OS=Clostrid yes N/A 0.403 0.204 0.352 2e-06
>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2 Back     alignment and function desciption
 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 54  WWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 113
           +    +++H +Y EA RV  F     S++S+E+KL++LG LMN+SH S +  YECS   L
Sbjct: 359 FKLHQRAAH-VYSEARRVHGFKDTVNSNLSDEEKLKKLGDLMNESHYSCSVLYECSCPEL 417

Query: 114 DSLVTCFREAGAYGARLTGAGW 135
           + LV   +E GA GARLTGAGW
Sbjct: 418 EELVQVCKENGALGARLTGAGW 439
Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6
>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1 Back     alignment and function description
>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1 Back     alignment and function description
>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1 Back     alignment and function description
>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1 Back     alignment and function description
>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1 Back     alignment and function description
>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4 Back     alignment and function description
>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8XKP9|GAL1_CLOPE Galactokinase OS=Clostridium perfringens (strain 13 / Type A) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q0TQU5|GAL1_CLOP1 Galactokinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=galK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
84468320 496 putative galactose kinase [Trifolium pra 0.413 0.163 0.475 3e-13
53747925 497 galactokinase [Pisum sativum] 0.413 0.162 0.475 5e-13
255556438 499 galactokinase, putative [Ricinus communi 0.505 0.198 0.457 6e-13
302799948 505 hypothetical protein SELMODRAFT_268487 [ 0.5 0.194 0.435 6e-13
302768387 505 hypothetical protein SELMODRAFT_144964 [ 0.5 0.194 0.435 6e-13
390600719 614 Galactokinase [Punctularia strigosozonat 0.622 0.198 0.407 8e-13
388501400215 unknown [Lotus japonicus] 0.413 0.376 0.475 8e-13
414873763 592 TPA: galactokinase [Zea mays] 0.387 0.128 0.519 9e-13
2736186 496 galactose kinase [Arabidopsis thaliana] 0.413 0.163 0.475 1e-12
15230749 496 Galactokinase [Arabidopsis thaliana] gi| 0.413 0.163 0.475 1e-12
>gi|84468320|dbj|BAE71243.1| putative galactose kinase [Trifolium pratense] Back     alignment and taxonomy information
 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 54  WWFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL 113
           +    +++H +Y EA RV  F  V  S++S+E+KL++LG LMN+SH S +  YECS   L
Sbjct: 359 YKLHQRAAH-VYSEAKRVYAFKDVVSSNLSDEEKLKKLGDLMNESHYSCSNLYECSCPEL 417

Query: 114 DSLVTCFREAGAYGARLTGAGW 135
           + L    R+ GA+GARLTGAGW
Sbjct: 418 EELTKVSRDNGAFGARLTGAGW 439

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|53747925|emb|CAF34022.1| galactokinase [Pisum sativum] Back     alignment and taxonomy information
>gi|255556438|ref|XP_002519253.1| galactokinase, putative [Ricinus communis] gi|223541568|gb|EEF43117.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302799948|ref|XP_002981732.1| hypothetical protein SELMODRAFT_268487 [Selaginella moellendorffii] gi|300150564|gb|EFJ17214.1| hypothetical protein SELMODRAFT_268487 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302768387|ref|XP_002967613.1| hypothetical protein SELMODRAFT_144964 [Selaginella moellendorffii] gi|300164351|gb|EFJ30960.1| hypothetical protein SELMODRAFT_144964 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|390600719|gb|EIN10114.1| Galactokinase [Punctularia strigosozonata HHB-11173 SS5] Back     alignment and taxonomy information
>gi|388501400|gb|AFK38766.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|414873763|tpg|DAA52320.1| TPA: galactokinase [Zea mays] Back     alignment and taxonomy information
>gi|2736186|gb|AAB94084.1| galactose kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15230749|ref|NP_187310.1| Galactokinase [Arabidopsis thaliana] gi|12643845|sp|Q9SEE5.2|GALK1_ARATH RecName: Full=Galactokinase; AltName: Full=Galactose kinase gi|12322687|gb|AAG51339.1|AC020580_19 galactose kinase; 34500-37226 [Arabidopsis thaliana] gi|22531036|gb|AAM97022.1| galactose kinase [Arabidopsis thaliana] gi|34098869|gb|AAQ56817.1| At3g06580 [Arabidopsis thaliana] gi|332640896|gb|AEE74417.1| Galactokinase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query196
TAIR|locus:2084344496 GALK [Arabidopsis thaliana (ta 0.510 0.201 0.443 6.7e-15
WB|WBGene00006461422 tag-96 [Caenorhabditis elegans 0.357 0.165 0.466 7.1e-13
UNIPROTKB|B7ZAX5434 GALK2 "cDNA, FLJ79339, highly 0.377 0.170 0.493 2.6e-12
UNIPROTKB|Q01415458 GALK2 "N-acetylgalactosamine k 0.377 0.161 0.493 2.9e-12
UNIPROTKB|F1SQG6458 GALK2 "Uncharacterized protein 0.377 0.161 0.480 4.9e-12
RGD|1308691458 Galk2 "galactokinase 2" [Rattu 0.377 0.161 0.493 4.9e-12
MGI|MGI:1917226458 Galk2 "galactokinase 2" [Mus m 0.377 0.161 0.493 6.2e-12
UNIPROTKB|F1MFK7447 GALK2 "Uncharacterized protein 0.377 0.165 0.480 7.6e-12
UNIPROTKB|E2RDA6458 GALK2 "Uncharacterized protein 0.377 0.161 0.467 1e-11
ZFIN|ZDB-GENE-041114-143457 galk2 "galactokinase 2" [Danio 0.372 0.159 0.506 1.3e-11
TAIR|locus:2084344 GALK [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 197 (74.4 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 47/106 (44%), Positives = 66/106 (62%)

Query:    35 VETKLSSVVVN---ALDFGSGGWWFE--SKSSHEIYLEAYRVERFLSVCRSDISEEQKLQ 89
             +E KL S+V N   +L   +    F+   +++H +Y EA RV  F     S++S+E+KL+
Sbjct:   335 LEEKLPSIVNNDPTSLAVLNAATHFKLHQRAAH-VYSEARRVHGFKDTVNSNLSDEEKLK 393

Query:    90 QLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 135
             +LG LMN+SH S +  YECS   L+ LV   +E GA GARLTGAGW
Sbjct:   394 KLGDLMNESHYSCSVLYECSCPELEELVQVCKENGALGARLTGAGW 439
GO:0004335 "galactokinase activity" evidence=IEA;IGI;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA;IDA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0005829 "cytosol" evidence=IDA
WB|WBGene00006461 tag-96 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZAX5 GALK2 "cDNA, FLJ79339, highly similar to N-acetylgalactosamine kinase (EC 2.7.1.157)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q01415 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK7 GALK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-143 galk2 "galactokinase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
PLN02521497 PLN02521, PLN02521, galactokinase 3e-25
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 4e-11
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 4e-11
TIGR00131386 TIGR00131, gal_kin, galactokinase 5e-09
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 5e-09
TIGR00549274 TIGR00549, mevalon_kin, mevalonate kinase 2e-06
COG1577307 COG1577, ERG12, Mevalonate kinase [Lipid metabolis 3e-06
PTZ00298328 PTZ00298, PTZ00298, mevalonate kinase; Provisional 5e-06
PRK03926302 PRK03926, PRK03926, mevalonate kinase; Provisional 1e-05
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 3e-05
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 3e-04
PLN02865423 PLN02865, PLN02865, galactokinase 4e-04
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information 
 Score =  101 bits (253), Expect = 3e-25
 Identities = 40/77 (51%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 59  KSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 118
           ++ H +Y EA RV  F     S +SEE+KL++LG LMN+SH S +  YECS   L+ LV 
Sbjct: 364 RAVH-VYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVK 422

Query: 119 CFREAGAYGARLTGAGW 135
             R+ GA GARLTGAGW
Sbjct: 423 VCRDNGALGARLTGAGW 439

Length = 497
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase Back     alignment and domain information
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 196
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.96
PLN02865423 galactokinase 99.96
PTZ00290468 galactokinase; Provisional 99.95
PRK05101382 galactokinase; Provisional 99.94
PLN02521497 galactokinase 99.93
PRK00555363 galactokinase; Provisional 99.91
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.91
PRK05322387 galactokinase; Provisional 99.9
PRK03817351 galactokinase; Provisional 99.85
KOG0631|consensus489 99.79
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.54
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.53
PTZ00298328 mevalonate kinase; Provisional 99.4
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.37
PLN02677387 mevalonate kinase 99.35
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.31
COG2605333 Predicted kinase related to galactokinase and meva 99.29
PRK03926302 mevalonate kinase; Provisional 99.27
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.25
KOG1511|consensus397 98.77
PRK01212301 homoserine kinase; Provisional 98.33
PLN02451370 homoserine kinase 98.13
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 97.81
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 97.72
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.62
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 97.54
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.25
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.17
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 97.1
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.57
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 96.53
PRK01123282 shikimate kinase; Provisional 96.05
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.88
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.47
PTZ00299336 homoserine kinase; Provisional 94.81
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 94.74
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 93.46
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 93.18
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 93.09
COG1907312 Predicted archaeal sugar kinases [General function 92.73
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 87.61
KOG4644|consensus948 85.23
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 81.02
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=99.96  E-value=6.4e-30  Score=233.47  Aligned_cols=127  Identities=25%  Similarity=0.298  Sum_probs=113.1

Q ss_pred             hhhhcCchhhhhccCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHH
Q psy7890          37 TKLSSVVVNALDFGSGGW---WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEAL  113 (196)
Q Consensus        37 ~~Lr~~~~~~l~~~~~~l---~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pel  113 (196)
                      ..|++++...+....+.+   +..++|++|+++||+||+++++||     +++|+.+||+||++||.||+++|++||||+
T Consensus       246 ~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al-----~~~dl~~fG~Lm~~SH~slrddyevt~pEl  320 (390)
T COG0153         246 KSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKAL-----RSGDLTEFGELMNESHESLRDDYEVTCPEL  320 (390)
T ss_pred             hhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhcccccchhH
Confidence            567778887777776666   347899999999999999999999     999999999999999999999999999999


Q ss_pred             HHHHHHHHHc-CCceEEEccCCCcceEEEeeh---------hhHHhcc----CCCcEEEeeCCccchhh
Q psy7890         114 DSLVTCFREA-GAYGARLTGAGWCISQDAHLV---------NIMAWVQ----SQPRWCISQDAHLVNIM  168 (196)
Q Consensus       114 D~Lv~~A~~~-Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~----~~p~~~i~~~~~g~~i~  168 (196)
                      |+|+++|... |++||||||||||||+|+|+|         .+.++|.    ..|.||+++|++|+++.
T Consensus       321 D~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~G~~~~  389 (390)
T COG0153         321 DTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTGLKAAFYVVEASQGAGVC  389 (390)
T ss_pred             HHHHHHHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhhcCccccEEEEeccCCcccc
Confidence            9999999985 889999999999999999999         2455673    36999999999999864

>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>KOG0631|consensus Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>KOG1511|consensus Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>KOG4644|consensus Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
2a2d_A478 X-Ray Structure Of Human N-Acetyl Galactosamine Kin 1e-12
2aj4_A548 Crystal Structure Of Saccharomyces Cerevisiae Galac 7e-08
1s4e_A352 Pyrococcus Furiosus Galactokinase In Complex With G 2e-06
1pie_A419 Crystal Structure Of Lactococcus Lactis Galactokina 6e-06
2cz9_A350 Crystal Structure Of Galactokinase From Pyrococcus 9e-06
3v2u_C520 Crystal Structure Of The Yeast Gal Regulon Complex 2e-05
3v5r_A505 Crystal Structure Of The Unliganded Form Of Gal3p L 2e-05
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478 Back     alignment and structure 
Iteration: 1

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 59  KSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVT 118
           + +  +Y EA RV +F  +C    + E  +Q LG LMNQSH S    YECS   LD LV 
Sbjct: 350 QRAKHVYSEAARVLQFKKICEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVD 407
Query: 119 CFREAGAYGARLTGAGW 135
             R+ GA G+RLTGAGW
Sbjct: 408 ICRKFGAQGSRLTGAGW 424
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548 Back     alignment and structure
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With Galactose, Adp And Magnesium Length = 352 Back     alignment and structure
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419 Back     alignment and structure
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350 Back     alignment and structure
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520 Back     alignment and structure
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query196
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 1e-19
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 2e-19
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 3e-16
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 2e-15
1pie_A419 Galactokinase; galactose, galactosemia, transferas 8e-15
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 1e-14
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 2e-14
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 3e-14
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 6e-13
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 2e-10
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 6e-08
3k17_A365 LIN0012 protein; protein structure initiative II(P 3e-05
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
 Score = 84.8 bits (209), Expect = 1e-19
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 28  GVKFSFEVETKLSSVVVNALDFGSGGWWFESKSSHEIYLEAYRVERFLSVCRS--DISEE 85
                      L++  V              + +  +Y E+ RV + L +  S    ++E
Sbjct: 359 NCSREEFTRDYLTTFPVRFQVL------KLYQRAKHVYSESLRVLKALKMMTSATFHTDE 412

Query: 86  QKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGAGW 135
                 G LMN+S  S    YECS    + + +     G++G+RLTGAGW
Sbjct: 413 DFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGW 462
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.94
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.89
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.84
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.83
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.79
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.69
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.68
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.68
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.53
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.43
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.39
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.38
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.36
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.34
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.16
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 98.69
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 98.39
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 98.3
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.86
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.31
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.92
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 96.73
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 95.86
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 95.01
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 94.8
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 94.29
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=99.94  E-value=5.1e-27  Score=220.21  Aligned_cols=114  Identities=25%  Similarity=0.364  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHcCCceEEEccC
Q psy7890          56 FESKSSHEIYLEAYRVERFLSVCRSD--ISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLVTCFREAGAYGARLTGA  133 (196)
Q Consensus        56 ~~~~Ra~Hi~~E~~RV~ea~~AL~~~--~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~Lv~~A~~~Ga~GaKltGa  133 (196)
                      .+++|++|+++||+||.++++||++.  ....+|++.||+||++||.+|+++|++|||++|.|+++|++.|++|+|||||
T Consensus       381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGa  460 (520)
T 3v2u_C          381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGA  460 (520)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecC
Confidence            37899999999999999999999321  0012379999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEee---h---------hhHHhccC-----------CCcEEEeeCCccchhhh
Q psy7890         134 GWCISQDAHL---V---------NIMAWVQS-----------QPRWCISQDAHLVNIMA  169 (196)
Q Consensus       134 GfGGcviaLv---~---------~v~~~Y~~-----------~p~~~i~~~~~g~~i~~  169 (196)
                      |||||+++|+   +         .+.+.|..           .|.+|+|+|+.|+.|..
T Consensus       461 G~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~GA~i~~  519 (520)
T 3v2u_C          461 GWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPALGTCLYE  519 (520)
T ss_dssp             CSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred             CCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccccCCCeEEEecCCCceEEee
Confidence            9999999999   6         24555621           37899999999998754
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 196
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 4e-11
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 1e-09
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 5e-09
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 2e-07
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 0.002
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 57.0 bits (137), Expect = 4e-11
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 65  YLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDSLV-TCFREA 123
                  E   +           L + G L+N SH SL   YE +   LD+L  T  ++A
Sbjct: 66  RARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQA 125

Query: 124 GAYGARLTGAGW 135
           G  GAR+TGAG+
Sbjct: 126 GVLGARMTGAGF 137
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query196
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.76
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.73
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.56
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 96.83
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 95.12
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 87.55
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=241.28  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=117.3

Q ss_pred             hhhhcCchhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q psy7890          37 TKLSSVVVNALDFGSGGW-WFESKSSHEIYLEAYRVERFLSVCRSDISEEQKLQQLGTLMNQSHTSLATKYECSHEALDS  115 (196)
Q Consensus        37 ~~Lr~~~~~~l~~~~~~l-~~~~~Ra~Hi~~E~~RV~ea~~AL~~~~~~~gD~~~fG~Lm~eSh~sLr~l~~vS~pelD~  115 (196)
                      ..|++++...+...++.+ +..++|+.|+++|+.||.++++||     +++|+++||+||++||.||+++|++|||++|.
T Consensus        37 ~~l~~~~~~~l~~~~~~l~~~~~~Ra~Hv~~E~~Rv~~~~~al-----~~~d~~~lg~Lm~~sh~sL~~~~~vS~peld~  111 (176)
T d1wuua2          37 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDDYEVSCPELDQ  111 (176)
T ss_dssp             SSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHH
T ss_pred             cchhhccHHHHHHHHhhhccHHHHHHHHHHHHHHhhHHHHHHh-----hccCHHHHHHHHHHHHHHHHHHHhccChhHHH
Confidence            357788888888777778 889999999999999999999999     99999999999999999999999999999999


Q ss_pred             HHHHHHHc-CCceEEEccCCCcceEEEeeh---------hhHHhccCCCcEEEeeCCccchhh
Q psy7890         116 LVTCFREA-GAYGARLTGAGWCISQDAHLV---------NIMAWVQSQPRWCISQDAHLVNIM  168 (196)
Q Consensus       116 Lv~~A~~~-Ga~GaKltGaGfGGcviaLv~---------~v~~~Y~~~p~~~i~~~~~g~~i~  168 (196)
                      |+++|++. |++||||||||||||+++|+|         .+.+.|+..|.||+++|++|++++
T Consensus       112 lv~~a~~~~G~lGaRltGaGfGGcviaLv~~~~~~~~~~~~~~~yg~~~~~~~~~~~~Ga~~i  174 (176)
T d1wuua2         112 LVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQAADGAKVL  174 (176)
T ss_dssp             HHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHCSSCCEEEEECCCCCSEEC
T ss_pred             HHHHHHhcCCCceeeeccCCCCcEEEEEechhhHHHHHHHHHHHhCCCCCEEEEecCCCceEc
Confidence            99999995 999999999999999999999         356777778999999999999876
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure