Psyllid ID: psy7891
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 929 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZUW2 | 980 | Hypoxia up-regulated prot | yes | N/A | 0.950 | 0.901 | 0.440 | 0.0 | |
| Q9JKR6 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.946 | 0.879 | 0.421 | 0.0 | |
| Q63617 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.911 | 0.847 | 0.429 | 0.0 | |
| Q9Y4L1 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.944 | 0.877 | 0.419 | 0.0 | |
| Q5ZLK7 | 1002 | Hypoxia up-regulated prot | yes | N/A | 0.941 | 0.873 | 0.427 | 0.0 | |
| Q60432 | 999 | Hypoxia up-regulated prot | yes | N/A | 0.946 | 0.879 | 0.413 | 0.0 | |
| Q566I3 | 646 | Hypoxia up-regulated prot | N/A | N/A | 0.644 | 0.927 | 0.524 | 1e-176 | |
| Q0VA61 | 643 | Hypoxia up-regulated prot | no | N/A | 0.644 | 0.931 | 0.508 | 1e-171 | |
| F4JMJ1 | 867 | Heat shock 70 kDa protein | yes | N/A | 0.756 | 0.810 | 0.361 | 1e-104 | |
| Q10061 | 848 | Heat shock protein 70 hom | yes | N/A | 0.461 | 0.505 | 0.354 | 5e-74 |
| >sp|Q7ZUW2|HYOU1_DANRE Hypoxia up-regulated protein 1 OS=Danio rerio GN=hyou1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/952 (44%), Positives = 578/952 (60%), Gaps = 69/952 (7%)
Query: 2 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 61
K+SL + VV L + +AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP
Sbjct: 4 KLSLWAIFCLVVAFLP--SQTESVAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTP 61
Query: 62 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 121
V + ER FG+ A + + P Y + +LGK+ D+P V ++ FP + + DE
Sbjct: 62 VAVCLKENERLFGDGALGVAVKNPKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDE 121
Query: 122 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181
+RGT+ FK ++ Y EEL+ M+L+ +R A A Q I +AVI VP YFNQ ER+++L
Sbjct: 122 KRGTVYFKFSEEMQYTPEELLGMILNYSRTLAQDFAEQPIKDAVITVPAYFNQAERRAVL 181
Query: 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241
+A +AGLKVLQL+ND TAVALNYG+F+RKD N T ++MFYDMG+ STT +IV+YQ V
Sbjct: 182 QAAHIAGLKVLQLINDNTAVALNYGVFRRKDINSTAQ-NIMFYDMGSGSTTATIVTYQTV 240
Query: 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301
KTKE G T PQ+ + GVG+DRTLGG EM++RLRD L K FNE KK+ KDV +N RA+A
Sbjct: 241 KTKESG---TQPQLQIRGVGFDRTLGGFEMELRLRDHLAKLFNEQKKSKKDVRDNLRAMA 297
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
KL KEA RLK VLSAN EH AQIEGL+D+IDFK VTR+EFEAL EDLFDRV PV+QAL
Sbjct: 298 KLLKEAQRLKTVLSANAEHTAQIEGLMDDIDFKAKVTRSEFEALCEDLFDRVPGPVKQAL 357
Query: 362 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLS 420
++ + MD I QVILVG TRVPKVQ+ + K VG ELSKN+N DEAAA+GAVY+AA LS
Sbjct: 358 AAAEMSMDEIEQVILVGGATRVPKVQDVLLKSVGKEELSKNINADEAAAMGAVYQAAALS 417
Query: 421 TGFKVKKFITKDIVLYPIQVEFERESESGD----TKIIKRMLFGPSNTYPQKKILTFNKY 476
FKVK F+ +D ++PIQVEF RE+E D K KR+LF YPQ+K++TFN+Y
Sbjct: 418 KAFKVKPFLVRDAAVFPIQVEFSRETEEEDGVKSLKHNKRILFQRMAPYPQRKVITFNRY 477
Query: 477 VGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFA 536
+ DF F ++Y ++ L+ + + + G++ ++ +SGV +F KH+ +AESKGIKAHF
Sbjct: 478 IDDFVFYINYG-DLSFLSEQDMKVFGSQNLTTVKLSGVGSSFKKHS--DAESKGIKAHFN 534
Query: 537 MDESGILSLVNIELVVE---KQEAAESPLSKLGNTLTSLFSRSK-----------TDE-- 580
MDESG+L L +E V E +++ ES L+KLGNT++SLF TDE
Sbjct: 535 MDESGVLILDRVESVFETIVEEKEEESTLTKLGNTISSLFGGGSSEPSANVTEPVTDEEE 594
Query: 581 -------------------NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKN-- 619
EKP E E AEE ++ E+Q ++ E +
Sbjct: 595 VTPEAGKEQDQPEKQEETVQEKPETEEGKEAEPQAEEQKEDKEKAENQGETESEKTEKPE 654
Query: 620 ---ATQTPDADKKPKI---VTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAK 673
+ +AD KPK+ + I+ V + + +E S KL L + K
Sbjct: 655 EKTTDEEKEADMKPKLQKKSKISADIAVELEVNDVLDPSAEDMEGSKKKLQDLTDRDLEK 714
Query: 674 VRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADV 733
+EK LNSLE+ +F+ + KL +EY +V E + I ++ ++W++E+G+ A +
Sbjct: 715 QEREKTLNSLEAFIFETQDKLYQDEYQAVVTEEEKEQISGRLSVASSWMDEEGYRAGTKL 774
Query: 734 LENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLN 793
L+ KL+E+ L ++ R E ++ P+ L +L++ LN S F S + + E
Sbjct: 775 LKEKLSELKKLCKGMFFRVEERKKWPDRLAALDSMLNHSNIFLKSARLIP------ESDQ 828
Query: 794 LFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLEN 853
+F+D+ELK+L+ +INET WK ++ EQ +L + VL + I K+ L+REV YL N
Sbjct: 829 IFTDVELKTLEKVINETITWKNETVAEQEKLSPTVKPVLLSKDIEAKLSLLDREVNYLLN 888
Query: 854 KSKLWMASLNKKKESTSKKKEDKPKNK--DSDKTKPSETEQS----KPEEQP 899
K+K K + + E N D++K P +TE KP E+P
Sbjct: 889 KAKFAKPKPKDKAKDKNSTSESSKANSTDDAEKVIPPKTEDGAEKVKPAEEP 940
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Danio rerio (taxid: 7955) |
| >sp|Q9JKR6|HYOU1_MOUSE Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/968 (42%), Positives = 568/968 (58%), Gaps = 89/968 (9%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L++SRFP ++++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELIVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T +VMFYDMG+ ST +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNVMFYDMGSGSTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLF---SRSKTDEN----------------------------- 581
ES L+KLGNT++SLF + S EN
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 582 -------------EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 628
+P +A EG K E+ S + + + + + A P+ DK
Sbjct: 626 AEPPAEETSQPPPSEPKGDAAREGEKPDEKESGDKPEAQKPNEKGQAGPEGAAPAPEEDK 685
Query: 629 KPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 685
KPK + E I + L E ++ +S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KPKPARKQKMVEEIGVELAVLDLPDLPEDELARSVQKLEELTLRDLEKQEREKAANSLEA 745
Query: 686 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L++KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLC 805
Query: 746 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 805
++ R E ++ PE L +L+N LN S F + + E +F+++E+ +L+
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQVFTEVEMTTLEK 859
Query: 806 LINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKK 865
+IN+T WK + EQ +L ++ VL + I K+ AL+REV+YL NK+K
Sbjct: 860 VINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKF-------- 911
Query: 866 KESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ----PAGDQEPLTPKPSPSPVDETTTP 921
K +PK+K+ + +P + +E+ PAG E P P + T P
Sbjct: 912 -----TKPRPRPKDKNGTRAEPPLNASAGDQEEKVIPPAGQTEEAKPILEPDKEETGTEP 966
Query: 922 EDKTKTEL 929
D EL
Sbjct: 967 ADSEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Mus musculus (taxid: 10090) |
| >sp|Q63617|HYOU1_RAT Hypoxia up-regulated protein 1 OS=Rattus norvegicus GN=Hyou1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/939 (42%), Positives = 566/939 (60%), Gaps = 92/939 (9%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L++SRFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNIMFYDMGSGSTVCTIVTYQTVKTKEAG---TQPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGPTR 388
Query: 383 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKPVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQ-QQS 612
ES L+KLGNT++SLF + + ++ +AV E ++ E SK+ + + + ++
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 613 AEESVKNATQTP------DADKKPKIVTVKEPISASETR--------------------- 645
AE +++ +Q P DA ++ + KE SE +
Sbjct: 626 AEAPMEDTSQPPPSEPKGDAAREGETPDEKESGDKSEAQKPNEKGQAGPEGVPPAPEEEK 685
Query: 646 -------------YGV-------STLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 685
GV L E ++ S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KQKPARKQKMVEEIGVELAVLDLPDLPEDELAHSVQKLEDLTLRDLEKQEREKAANSLEA 745
Query: 686 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L++KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKDKLAELRKLC 805
Query: 746 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 805
++ R E ++ PE L +L+N LN S F + + E +F+D+E+ +L+
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQIFTDVEMTTLEK 859
Query: 806 LINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKK 865
+IN+T WK + EQ +L ++ VL + I K+ AL+REV+YL NK+K
Sbjct: 860 VINDTWTWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKF-------- 911
Query: 866 KESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQPAGDQE 904
K +PK+K+ +T+P P AGDQE
Sbjct: 912 -----TKPRPRPKDKNGTRTEP-------PLNASAGDQE 938
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Y4L1|HYOU1_HUMAN Hypoxia up-regulated protein 1 OS=Homo sapiens GN=HYOU1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/970 (41%), Positives = 572/970 (58%), Gaps = 93/970 (9%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L+++RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ+VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGM---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VP+VQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVE 448
Query: 442 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV ++F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGDSFKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKT---------------------------------DE 580
ES L+KLGNT++SLF T +E
Sbjct: 566 DSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDTVQEEEESPAEGSKDEPGEQVELKEE 625
Query: 581 NEKPI------------NEAVDEGNKTAEEPSKNVNSTESQQQS--AEESVKNATQTPDA 626
E P+ +A EG K E+ +N + +E+Q+ S AE + P+
Sbjct: 626 AEAPVEDGSQPPPPEPKGDATPEGEKATEK--ENGDKSEAQKPSEKAEAGPEGVAPAPEG 683
Query: 627 DKKPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSL 683
+KK K + E I + L E ++ +S+ KL L + K +EKA NSL
Sbjct: 684 EKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSL 743
Query: 684 ESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINS 743
E+ +F+ + KL EY V+ + + I K+ + WLE++G A +L+ KL E+
Sbjct: 744 EAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRK 803
Query: 744 LVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSL 803
L ++ R E ++ PE L +L+N LN S F + + E +F+++E+ +L
Sbjct: 804 LCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGARLIP------EMDQIFTEVEMTTL 857
Query: 804 DTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLN 863
+ +INET WK + EQ +L ++ VL + I K+ AL+REV+YL NK+K
Sbjct: 858 EKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKF------ 911
Query: 864 KKKESTSKKKEDKPKNKDSDKTKP----SETEQSKPEEQPAGDQEPLTPKPSPSPVDETT 919
K +PK+K+ + +P S ++Q + PAG E P P V+ +
Sbjct: 912 -------TKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKVETGS 964
Query: 920 TPEDKTKTEL 929
P D EL
Sbjct: 965 EPGDTEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Homo sapiens (taxid: 9606) |
| >sp|Q5ZLK7|HYOU1_CHICK Hypoxia up-regulated protein 1 OS=Gallus gallus GN=HYOU1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/982 (42%), Positives = 576/982 (58%), Gaps = 107/982 (10%)
Query: 13 VLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERT 72
+LL H+ +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER
Sbjct: 12 LLLACCVPHTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERL 71
Query: 73 FGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND 132
FG+ A + + P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK +
Sbjct: 72 FGDSALGMSIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQ 131
Query: 133 NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVL 192
Y EE++ M+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVL
Sbjct: 132 TLQYSPEEMLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVL 191
Query: 193 QLMNDYTAVALNYGIFKRKDFNETNPVH------VMFYDMGAWSTTVSIVSYQVVKTKER 246
QL+ND TAVALNYG+ K + P+H +MFYDMGA ST +IV+YQ VKTK+
Sbjct: 192 QLINDNTAVALNYGVSGGKT---SMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDS 248
Query: 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 306
G T PQ+ + G+G+DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KE
Sbjct: 249 G---TQPQLQIQGIGFDRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKE 304
Query: 307 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 366
A RLK VLSAN +H AQIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ +
Sbjct: 305 ANRLKTVLSANADHMAQIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEM 364
Query: 367 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 425
+D I QVILVG TRVPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKV
Sbjct: 365 NLDGIDQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKV 424
Query: 426 KKFITKDIVLYPIQVEFERESESGDT----KIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
K F+ +D ++PIQVEF RE E D K KR+LF YPQ+K++TFN+Y DF
Sbjct: 425 KPFMVRDAAMFPIQVEFTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFE 484
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F V+Y ++ LN + + + G+ ++ + GV E+F KH+ + ESKGIKAHF MDESG
Sbjct: 485 FYVNYG-DLSFLNQDDLRIFGSLNLTTVRLKGVGESFKKHS--DYESKGIKAHFNMDESG 541
Query: 542 ILSLVNIELV----VEKQEAAESPLSKLGNTLTSLFSRS----KTDEN------------ 581
+LSL +E V VE + ES L+KLGNT++SLF + EN
Sbjct: 542 VLSLDRVESVFETLVEDKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESL 601
Query: 582 --EKPINEAVDEGNKTAEEPSKNVNSTESQQ----------------QSAEESVKNATQT 623
+ V +G K++ E + E QQ Q EE K+ +
Sbjct: 602 AEAAKEEQGVKQGQKSSAEDAGEEQGEEKQQSPHPDQAEAVPPKEESQKNEEGEKSEARD 661
Query: 624 PDADKKPKIVTVKEPISASETRYG-------------------------------VSTLN 652
P DK+ TV E + + G V L
Sbjct: 662 PKEDKE----TVNEEELSKSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLL 717
Query: 653 EKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIV 712
E +++ S+ KL L + K +EK+ NSLES +F+ + KL EEY V+ E + I
Sbjct: 718 EDELKSSMKKLQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEIS 777
Query: 713 DKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVS 772
K+ E +NW+EE+G+ A L++KL E+ L ++ R E ++ PE L +L + LN S
Sbjct: 778 KKLSEASNWMEEEGYAAATKELKDKLAELKKLCRNLFFRVEERRKWPERLAALESLLNHS 837
Query: 773 VTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVL 832
F + + E +F+++EL +L+ INET VWK ++ EQN+L ++ VL
Sbjct: 838 NIFLKGARMIP------ESDQIFTEVELGTLEKAINETTVWKNETLAEQNKLSPAEKPVL 891
Query: 833 TIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSETEQ 892
+ I KI L+REV+YL +K+K K+K +T K D KN T SE+E
Sbjct: 892 LSKDIELKIAGLDREVQYLLDKAKFAKPKPKKEKNAT---KSDSGKN----ATGTSESEN 944
Query: 893 SKPEEQPAGDQEPLTPKPSPSP 914
+ P + +++P P+ P
Sbjct: 945 TIPPTEGKQEEKPEDISPAKEP 966
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Gallus gallus (taxid: 9031) |
| >sp|Q60432|HYOU1_CRIGR Hypoxia up-regulated protein 1 OS=Cricetulus griseus GN=HYOU1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/968 (41%), Positives = 563/968 (58%), Gaps = 89/968 (9%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L++ RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRDRFPEHELNIDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T +VMFYDMG+ +T +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTA-QNVMFYDMGSGTTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L K FNE ++ KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRRGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR E E L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVESEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG EL KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERESES----GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E K KR+LF YPQ K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGVRSLKHNKRVLFSRMGPYPQGKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+ K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESLKKY--PDYESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKT---------------------------------DE 580
ES L+KLGNT++SLF + +E
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPTEGSKDEPGEQGDLKEE 625
Query: 581 NEKPI------------NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 628
E P+ +A EG K E+ S + + ++ + + P+ +K
Sbjct: 626 TEAPVEDTSQPPPPEPKGDAAPEGEKPDEKESGGKSEAQKPEEKGQSGPEGVPPAPEEEK 685
Query: 629 KPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 685
K K + E I + L E ++ +S+ KL+ L + K +EKA NSLE+
Sbjct: 686 KQKPARKQKMVEEIGVELAVLDLPDLPEDELARSVKKLEDLTLRDLEKQEREKAANSLEA 745
Query: 686 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745
+F+ + KL EY V+ + + I K+ + WLE++G+ A +L+ KL E+ L
Sbjct: 746 FIFETQDKLYQPEYQEVSTEEQREEISGKLSATSTWLEDEGFGATTVMLKEKLAELKKLC 805
Query: 746 VPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDT 805
++ R E ++ PE L +L+N LN S F + + E +F+++E+ +L+
Sbjct: 806 QGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIP------EMDQIFTEVEMTTLEK 859
Query: 806 LINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKK 865
+IN+T WK + EQ +L ++ VL + I K+ AL+REV+YL NK+K
Sbjct: 860 VINDTWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQYLLNKAKF-------- 911
Query: 866 KESTSKKKEDKPKNKDSDKTKPSETEQSKPEEQ----PAGDQEPLTPKPSPSPVDETTTP 921
K +PK+K+ +T+P + +E+ PAG E P P + TT P
Sbjct: 912 -----TKPRPRPKDKNGTRTEPPLNATAGDQEEKVIPPAGQPEEAKPILEPDKEETTTEP 966
Query: 922 EDKTKTEL 929
D EL
Sbjct: 967 TDSEPLEL 974
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation. May play a role as a molecular chaperone and participate in protein folding. Cricetulus griseus (taxid: 10029) |
| >sp|Q566I3|HYOU1_XENLA Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus laevis GN=hyou1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 326/622 (52%), Positives = 435/622 (69%), Gaps = 23/622 (3%)
Query: 8 LCSSVVLLLTLFE-HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 66
+C + L L H+ +AVMSVDLGSEW+KVAIV PGVPMEI LNKES+RKTP +A
Sbjct: 5 VCVLWMFLFALLSSHTESVAVMSVDLGSEWVKVAIVKPGVPMEIVLNKESRRKTPAAIAL 64
Query: 67 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 126
+ ER FGE+A + + P ++ YF DLLGK +D+P VQ F++RFP Y +V DE R T+
Sbjct: 65 KENERLFGENALGMAVKNPKVTFRYFQDLLGKRLDNPQVQAFEARFPEYHLVKDERRETV 124
Query: 127 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 186
+FK +++ Y EEL+ M+L+ +R A A Q + + VI VP +FNQ ER+++L+A +L
Sbjct: 125 LFKLSEDLTYSPEELLGMVLNYSRSLAEDFAEQPVKDVVITVPAFFNQAERRAVLQAAQL 184
Query: 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 246
+GLKVLQL+ND TAVALNYG+F+RKD N T +VMFYDMG ST +IV+YQ +KTK+
Sbjct: 185 SGLKVLQLINDNTAVALNYGVFRRKDINATAQ-NVMFYDMGTRSTICTIVTYQTIKTKDS 243
Query: 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 306
G T PQ+ + GVG+DRTLGGLE+ +RLRD L K FNE KK+ KDV EN RA+ KL KE
Sbjct: 244 G---TQPQLQIRGVGFDRTLGGLEIDLRLRDHLAKLFNEQKKSKKDVRENQRAMNKLLKE 300
Query: 307 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 366
A R+K +LSANN+H AQIEGL+D+IDFK VTR E E L DLF+RV PV+QAL S+ +
Sbjct: 301 ANRVKTILSANNDHMAQIEGLMDDIDFKAKVTRQELEDLCADLFNRVSAPVQQALASAEM 360
Query: 367 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 425
M+ I QVILVG TRVPKVQE + KVVG ELSKN+N DEAAA+GAVY+AA LS FKV
Sbjct: 361 KMEEIDQVILVGGATRVPKVQEFLLKVVGKEELSKNINADEAAAMGAVYQAAALSKAFKV 420
Query: 426 KKFITKDIVLYPIQVEFERESE----SGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
K FI +D ++PIQVEF RE E S K KR+LF YPQ+K++TFN+Y DF
Sbjct: 421 KPFIVRDAAIFPIQVEFTREVEEENHSKSLKHNKRILFQRLAPYPQRKVITFNRYTDDFA 480
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F+++Y ++ +L PE + + G+ ++ ++GV E+F K + + ESKGIKAHF MDESG
Sbjct: 481 FSINYG-DLSYLGPEDLKVFGSLNLTTVKLNGVGESFQKRS--DYESKGIKAHFNMDESG 537
Query: 542 ILSLVNIELVVE----KQEAAESPLSKLGNTLTSLF-SRSKTDENEKPINEAVDEGNKTA 596
+L+L +E V E ++ ES L+KLGNT++SLF S E ++ + ++V E ++
Sbjct: 538 LLTLDRVEAVFETVADEKPELESTLTKLGNTISSLFGGGSSVSETKENVTDSVQEEDEVP 597
Query: 597 EEPSKNVNSTESQQQSAEESVK 618
EP+K E +Q+SA+ + K
Sbjct: 598 TEPTK-----EEEQESADPADK 614
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Xenopus laevis (taxid: 8355) |
| >sp|Q0VA61|HYOU1_XENTR Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis GN=hyou1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 602 bits (1551), Expect = e-171, Method: Compositional matrix adjust.
Identities = 316/622 (50%), Positives = 431/622 (69%), Gaps = 23/622 (3%)
Query: 8 LCSSVVLLLTLFE-HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 66
+C + LL L ++ +AVMSVD+GSEWMK+AIV PGVPMEI LNKES+RKTP +A
Sbjct: 5 VCVFTMFLLALLSSNTESVAVMSVDMGSEWMKIAIVKPGVPMEIVLNKESRRKTPVAIAL 64
Query: 67 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 126
+ ER FG+ A + + P ++ YF DLLGK D+P V+ F++RFP Y +V DE R T+
Sbjct: 65 KENERLFGDSALGMAVKNPKVTFRYFQDLLGKRADNPHVKAFEARFPEYQLVKDEHRETV 124
Query: 127 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 186
+FK ++ Y EEL+ M+L+ +R A A Q + + VI VP +FNQ ER+++L+A +L
Sbjct: 125 LFKLSEELTYSPEELLGMMLNYSRSLAEEFAEQPVKDVVITVPAFFNQAERRAVLQAAQL 184
Query: 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 246
+ LKVLQL+ND TAVALNYG+F+RKD N T ++MFY+MG+ ST +IV+YQ VKTK+
Sbjct: 185 SDLKVLQLINDNTAVALNYGVFRRKDINATAQ-NIMFYEMGSRSTICTIVTYQSVKTKDS 243
Query: 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 306
G PQ+ + GVG+DRTLGG+EM +RLRD L K FNE KK+ KDV EN RA++KL KE
Sbjct: 244 GM---QPQLQIRGVGFDRTLGGIEMDLRLRDHLAKLFNEQKKSKKDVRENQRAMSKLLKE 300
Query: 307 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 366
A R+K +LSANN+H AQIEGL+D+IDFK VTR E E L DLF+RV PV+ AL S+ +
Sbjct: 301 ANRVKTILSANNDHMAQIEGLMDDIDFKAKVTRQELEDLCADLFNRVSAPVQHALSSAEM 360
Query: 367 PMDVISQVILVGAGTRVPKVQEKITKVVGV-ELSKNLNTDEAAALGAVYKAADLSTGFKV 425
M+ I QVILVG TRVPKVQE + KVVG EL KN+N DEAAA+GAVY+AA LS FKV
Sbjct: 361 KMEEIDQVILVGGATRVPKVQELLLKVVGKEELGKNINADEAAAMGAVYQAAALSKAFKV 420
Query: 426 KKFITKDIVLYPIQVEFERESESGD----TKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
K FI +D ++PIQVEF RE E D K KR+LF YPQ+K++TFN+Y +F
Sbjct: 421 KPFIVRDAAIFPIQVEFTREVEEEDHSKSLKHNKRILFQRLAPYPQRKVITFNRYTDNFA 480
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F+++Y ++ +L P+ + + G+ ++ ++GV E+F K + + ESKGIKAHF MDESG
Sbjct: 481 FSINYG-DLSYLGPDDLKVFGSLNLTTVKLNGVGESFQKRS--DYESKGIKAHFNMDESG 537
Query: 542 ILSLVNI----ELVVEKQEAAESPLSKLGNTLTSLF-SRSKTDENEKPINEAVDEGNKTA 596
+L+L + E VV+++ ES L+KLGNT++SLF S E ++ ++V E ++
Sbjct: 538 LLTLDRVEAVFETVVDEKPEQESTLTKLGNTISSLFGGGSSVPETKENATDSVQEEDEVP 597
Query: 597 EEPSKNVNSTESQQQSAEESVK 618
EP+K E +Q+SA+ + K
Sbjct: 598 TEPTK-----EEEQESADAADK 614
|
Has a pivotal role in cytoprotective cellular mechanisms triggered by oxygen deprivation (By similarity). May play a role as a molecular chaperone and participate in protein folding. Xenopus tropicalis (taxid: 8364) |
| >sp|F4JMJ1|HSP7R_ARATH Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 273/755 (36%), Positives = 411/755 (54%), Gaps = 52/755 (6%)
Query: 26 AVMSVDLGSEWMKVAIVS---PGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGT 82
AV+SVDLGSEW+KVA+V+ P+ +A+N+ SKRK+P LVAF G+R GE+A I
Sbjct: 25 AVLSVDLGSEWVKVAVVNLKRGQSPISVAINEMSKRKSPALVAFQSGDRLLGEEAAGITA 84
Query: 83 RFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEEL 141
R+P+ Y D++GK V S + +DIV D RG + K +D +Y VEEL
Sbjct: 85 RYPNKVYSQLRDMVGKPFKH-VKDFIDSVYLPFDIVEDS-RGAVGIKIDDGSTVYSVEEL 142
Query: 142 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 201
+AM+L A A A + + V+ VP YF Q ER+ +++A +LAG+ VL L+N+++
Sbjct: 143 LAMILGYASNLAEFHAKIPVKDMVVSVPPYFGQAERRGLIQASQLAGVNVLSLVNEHSGA 202
Query: 202 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261
AL YGI KDF HV+FYDMG+ ST ++V Y KE G + Q V V
Sbjct: 203 ALQYGI--DKDF-ANGSRHVIFYDMGSSSTYAALVYYSAYSEKEYGKTVSVNQFQVKDVR 259
Query: 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF 321
+D LGG M++RL + +FN+ DV + P+A+AKL K+ R K +LSAN
Sbjct: 260 WDLGLGGQSMEMRLVEHFADEFNKQLGNGVDVRKFPKAMAKLKKQVKRTKEILSANTAAP 319
Query: 322 AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
+E L D+ DF+ +TR +FE L +DL++R P++ LK S + +D IS V L+G T
Sbjct: 320 ISVESLHDDRDFRSTITREKFEELCKDLWERSLTPLKDVLKHSGLKIDDISAVELIGGAT 379
Query: 382 RVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLSTGFKVKKFI-TKDIVLYPIQ 439
RVPK+Q I + +G +L K+L+ DEA LG+ AA+LS G K+K+ + D Y
Sbjct: 380 RVPKLQSTIQEFIGKQQLDKHLDADEAIVLGSALHAANLSDGIKLKRRLGIVDGSPYGFL 439
Query: 440 VEFE----RESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNP 495
VE E ++ ES +++ RM PS F +V D +F+VS A E E + P
Sbjct: 440 VELEGPNVKKDESTKQQLVPRMKKLPSK--------MFRSFVLDKDFDVSLAYESEGILP 491
Query: 496 EQIAMLGTKQ--ISKFDVSGVSEAFGKHNEENAESKGIKA--HFAMDESGILSLVNIELV 551
GT +++ VSG+++A K++ N S IKA HF++ SGILSL + V
Sbjct: 492 P-----GTTSPVFAQYSVSGLADASEKYSSRNL-SAPIKANLHFSLSRSGILSLDRGDAV 545
Query: 552 VEKQEAAESPLSKL---GNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTES 608
+E E + P + NT TS + + TDEN + E + +T E S N+T
Sbjct: 546 IEITEWVDVPKKNVTIDSNTTTS--TGNATDENSQENKEDL----QTDAENSTASNTT-- 597
Query: 609 QQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVST-LNEKQVEKSLSKLDSLN 667
AEE A + +KK K T + P+ E G +++ + ++ KL++L+
Sbjct: 598 ----AEEP---AVASLGTEKKLKKRTFRIPLKVVEKTVGPGAPFSKESLAEAKIKLEALD 650
Query: 668 QIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGW 727
+ + + R + N+LES ++ K KLE E+ ++ E K V+K+DE+ +WL DG
Sbjct: 651 KKDRERRRTAELKNNLESYIYATKEKLETPEFEKISTQEERKAFVEKLDEVQDWLYMDGE 710
Query: 728 NAEADVLENKLNEINSLVVPIWERHREHQERPEAL 762
+A A E +L+ + ++ PI R E RP A+
Sbjct: 711 DANATEFEKRLDSLKAIGSPISFRSEELTARPVAI 745
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q10061|LHS1_SCHPO Heat shock protein 70 homolog lhs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.06 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 261/440 (59%), Gaps = 11/440 (2%)
Query: 1 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 60
MK S++T+ ++ F H++ +V+++D G+EW K A++ PG+P+EI L K+++RK
Sbjct: 1 MKRSVLTI---ILFFSCQFWHAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKE 57
Query: 61 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKS-IDSPVVQLFKSRFPYYDIVA 119
+ VAF ER FG DA + TRFP++S +LL + ++S +VQ ++S +P +V
Sbjct: 58 QSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVE 117
Query: 120 DEERGT-IVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQ 178
+EE + I F +D E Y +EE++AM + A A + I + V+ VP +FN+++R
Sbjct: 118 NEETTSGISFVISDEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRS 177
Query: 179 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY 238
+L+A + VL L++D AVA+ Y + + F+ T+P + + YD G+ ST+ +++S+
Sbjct: 178 ILLEAARILNKHVLALIDDNVAVAIEYSL--SRSFS-TDPTYNIIYDSGSGSTSATVISF 234
Query: 239 QVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298
V+ G + ++ L G+ L G E+ +L F+ F +K D+ N R
Sbjct: 235 DTVEGSSLGKKQNITRIRALASGFTLKLSGNEINRKLIGFMKNSF--YQKHGIDLSHNHR 292
Query: 299 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVE 358
A+A+L KEA R+K++LSAN+E A IE L D IDF+L +TR+ E+L +D+ D P+
Sbjct: 293 ALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPIN 352
Query: 359 QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAA 417
+ALK + + I+ +IL G +R+P +Q + V + +SKN+N DEA+ GA + A
Sbjct: 353 KALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDKISKNVNADEASVKGAAFYGA 412
Query: 418 DLSTGFKVKKFITKDIVLYP 437
L+ F+VK I +DI+ YP
Sbjct: 413 SLTKSFRVKPLIVQDIINYP 432
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 929 | ||||||
| 91080263 | 872 | PREDICTED: similar to AGAP001827-PA [Tri | 0.882 | 0.940 | 0.562 | 0.0 | |
| 345491532 | 938 | PREDICTED: hypoxia up-regulated protein | 0.981 | 0.972 | 0.525 | 0.0 | |
| 242024934 | 991 | 150 kDa oxygen-regulated protein precurs | 0.928 | 0.870 | 0.537 | 0.0 | |
| 383847076 | 946 | PREDICTED: hypoxia up-regulated protein | 0.942 | 0.926 | 0.506 | 0.0 | |
| 345491538 | 923 | PREDICTED: hypoxia up-regulated protein | 0.965 | 0.971 | 0.514 | 0.0 | |
| 328784616 | 951 | PREDICTED: hypoxia up-regulated protein | 0.940 | 0.919 | 0.514 | 0.0 | |
| 380029680 | 952 | PREDICTED: hypoxia up-regulated protein | 0.940 | 0.918 | 0.512 | 0.0 | |
| 328711504 | 960 | PREDICTED: hypoxia up-regulated protein | 0.992 | 0.960 | 0.505 | 0.0 | |
| 403183091 | 925 | AAEL017263-PA [Aedes aegypti] | 0.975 | 0.979 | 0.497 | 0.0 | |
| 350410432 | 953 | PREDICTED: hypoxia up-regulated protein | 0.953 | 0.929 | 0.508 | 0.0 |
| >gi|91080263|ref|XP_973490.1| PREDICTED: similar to AGAP001827-PA [Tribolium castaneum] gi|270005695|gb|EFA02143.1| hypothetical protein TcasGA2_TC007793 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/858 (56%), Positives = 632/858 (73%), Gaps = 38/858 (4%)
Query: 5 LVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLV 64
+ + S+++ L T+ E +AVMSVDLGSEWMK+ IVSPGVPMEIALNKESKRK+P ++
Sbjct: 4 IFAILSTLLALATVCE---SLAVMSVDLGSEWMKIGIVSPGVPMEIALNKESKRKSPAVI 60
Query: 65 AFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERG 124
+F R+FGE+AQ IGTRFP N+Y Y LDLLGKSI+ P+V+L+K RFPYY+IV D ER
Sbjct: 61 SFRDNVRSFGEEAQTIGTRFPKNAYMYLLDLLGKSINHPLVKLYKERFPYYEIVEDPERN 120
Query: 125 TIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184
TI+FK +DN Y EEL+A LL KA+E+A A Q I E V+ VPGYFNQIER+S+L+A
Sbjct: 121 TILFKHDDNVFYSPEELIAQLLGKAKEFAEQGARQPIKECVLTVPGYFNQIERKSLLQAA 180
Query: 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 244
LAGLKVLQL+NDYTAVALNYGIF+ KDFNET +VMFYDMGA STT ++VSYQ VKTK
Sbjct: 181 NLAGLKVLQLINDYTAVALNYGIFRSKDFNETAQ-YVMFYDMGATSTTATLVSYQTVKTK 239
Query: 245 ERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLF 304
++GFVETHPQ+SV+GVG+DRTLGGLE+Q+RLRD L +KFNEMKKT DVF N R++AKLF
Sbjct: 240 DKGFVETHPQLSVIGVGFDRTLGGLEIQLRLRDHLARKFNEMKKTKNDVFANARSMAKLF 299
Query: 305 KEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS 364
KEAGR+KN+LSAN EH+AQIEGL+DE DFK+LVTR E E L DLF+RVG PVE AL+S+
Sbjct: 300 KEAGRVKNILSANAEHYAQIEGLLDEEDFKVLVTRDELEQLAGDLFERVGRPVELALQSA 359
Query: 365 AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 424
+ D+I QV+LVGAGTRVPKVQEK+ VVG +L+KNLNTDEAA +GAVYKAADLSTGF+
Sbjct: 360 HLTKDIIGQVVLVGAGTRVPKVQEKLQGVVGQDLAKNLNTDEAATMGAVYKAADLSTGFQ 419
Query: 425 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNV 484
VKKF+T+D VLYPIQV FERE+ G K +KR LF N YPQKKI+TFNKY DFNF V
Sbjct: 420 VKKFLTRDAVLYPIQVVFERETPEG-VKQVKRTLFSLMNPYPQKKIITFNKYNDDFNFEV 478
Query: 485 SYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILS 544
+YA ++++L P +IA +G +++ + GV+EA K++ EN E+KGIKAHF+MDESGIL+
Sbjct: 479 NYA-DLDYLPPNEIANVGQVNLTEVSLVGVAEALKKNSGENVETKGIKAHFSMDESGILN 537
Query: 545 LVNIELVVEK---QEAAESPLSKLGNTLTSLF-SRSKTDENEKPINEAVDEGNKTAEEPS 600
LVN+ELVVEK + E SKLGNT++ LF KT+ E+P+ K EP
Sbjct: 538 LVNVELVVEKTVSETDEEGTFSKLGNTISKLFGGEEKTETGEEPV--------KNDTEPQ 589
Query: 601 KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 660
KN T P + KPK++TVKEPI+ + ++ L++KQ + SL
Sbjct: 590 KN------------------TTVPKPEIKPKVITVKEPITTKQKPLTITPLSKKQFDDSL 631
Query: 661 SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITN 720
KL L+++E R+ ALN+LES + + ++KL+ +++ + A+ +E +TI E+++
Sbjct: 632 EKLSKLDKVEKELNRRATALNNLESFVIEVQNKLDEDDFVASASQDEVETIRKSCSEVSD 691
Query: 721 WLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIK 780
WL EDG +A+AD E KL+ + +L +++R EH ERPEAL +LN LN S F K
Sbjct: 692 WLYEDGSDADADTYEKKLDGLKTLTSDLFKRVWEHNERPEALNALNTMLNQSSQFLTVAK 751
Query: 781 NLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840
NL+ +TN D +F+D E+++L+ +I ET+ WK K +EQN+LKK + + LT++SI EK
Sbjct: 752 NLTKSTNPERD--VFTDGEVEALEKIIKETEEWKSKMIEEQNKLKKYESVKLTVKSITEK 809
Query: 841 IRALEREVRYLENKSKLW 858
+ A++REV+YL NK +LW
Sbjct: 810 MGAIDREVKYLVNKHRLW 827
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491532|ref|XP_003426634.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 2 [Nasonia vitripennis] gi|345491534|ref|XP_001606217.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Nasonia vitripennis] gi|345491536|ref|XP_003426635.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 3 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/935 (52%), Positives = 654/935 (69%), Gaps = 23/935 (2%)
Query: 2 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 61
K+ ++ L + LL+ +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP
Sbjct: 6 KLPMMFLALLAIGLLS--SQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTP 63
Query: 62 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 121
++F GERTFGEDAQ++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD
Sbjct: 64 VTISFRDGERTFGEDAQVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADT 123
Query: 122 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181
ER TIVF+ + + Y EEL+A LL+KA+E+A SAGQ INEAVI VPGYFNQ ER ++L
Sbjct: 124 ERNTIVFRLDKDTTYTPEELLAQLLYKAKEFAQNSAGQKINEAVITVPGYFNQAERLALL 183
Query: 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241
+A ELA +KVLQL NDY+AVALNYGIF K+ N+T ++MFYDMGA STT ++V YQ +
Sbjct: 184 QAAELADIKVLQLFNDYSAVALNYGIFHHKEINDT-AHYIMFYDMGASSTTATVVGYQNI 242
Query: 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301
KTKERGFVETHPQVS+LGVGYDRTLGGLEMQ+RLRD+L K+F+ MKKT VFENPRA+A
Sbjct: 243 KTKERGFVETHPQVSILGVGYDRTLGGLEMQLRLRDYLAKEFDAMKKTKNSVFENPRALA 302
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
KLFKE+GRLKNVLSAN +H+AQIEGL+D+ DF+L VTR +FE L DLFDRV PV+ AL
Sbjct: 303 KLFKESGRLKNVLSANADHYAQIEGLLDDQDFRLQVTREKFEELCADLFDRVSNPVKTAL 362
Query: 362 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421
++S + MD+ISQV+LVGAGTRVPKVQEK++ V ELSKN+NTDEAAALGAVYKAADLS
Sbjct: 363 ETSGLTMDIISQVVLVGAGTRVPKVQEKLSAFVKTELSKNINTDEAAALGAVYKAADLSQ 422
Query: 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
GFKVKKFITKD VL+PIQ+ F+R + K ++R LF N YPQKKI+TFNK+ DF+
Sbjct: 423 GFKVKKFITKDAVLFPIQIVFDRTVDD-KVKQVRRTLFSKMNAYPQKKIITFNKHNQDFS 481
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F V+YA E+++L E+IA +G IS ++GV+EA KH +E ESKGIKAHF+MDESG
Sbjct: 482 FEVNYA-ELDYLPKEEIAAIGNLNISTITLTGVAEALAKHAKEGGESKGIKAHFSMDESG 540
Query: 542 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRSKTDENEK---PINEAVDEGNK 594
IL+LVN+ELV EK A E SKLG+T++ LFS S E EK P E + ++
Sbjct: 541 ILNLVNVELVSEKTSIAADEEEGAFSKLGSTISKLFSGSNDKEPEKVEEPPKEDIKPVHE 600
Query: 595 TAEEPS-----KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVS 649
E P + + + EE +N T+ D +KKP IVT+KEPI A E + G
Sbjct: 601 EPEYPGLKKEAEEKAKANNDSKPTEEKAENKTEKADKEKKPTIVTIKEPIEAKELKLGPQ 660
Query: 650 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESK 709
L+ ++ S KL +LN + K ++E ALN+LES + DA+ KLE +EY + +++
Sbjct: 661 MLSNDKLATSQEKLQALNAYDKEKAKRESALNNLESFVIDAQQKLESDEYKAAIIAEDAE 720
Query: 710 TIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNAL 769
I +E++ WL E+G+ A A+ E KL ++ L ++ER EH+ERPEALK + + L
Sbjct: 721 KIKQACNEVSEWLYEEGFEAPAETYEQKLTDLQKLTGDLYERVFEHRERPEALKGMVSML 780
Query: 770 NVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDP 829
N S F ++++NL+++ +F+ +E+++L+ INET+ +++ K ++ K +P
Sbjct: 781 NGSRVFLDNMRNLNVSA------EIFTQVEIETLEKAINETQEYRDVVVKVTSETKLYEP 834
Query: 830 IVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSE 889
+V +R I K+ L+REV+YL NK+K+W K +T + E+K + DS+ +
Sbjct: 835 VVYKVRDIANKMALLDREVKYLVNKAKIWKPKQEATKNNTEETGENKTNSGDSEAETKTS 894
Query: 890 TEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 924
+ K E + + T + P +TT E K
Sbjct: 895 DNKDKAESERDDSETIETEETLELPPSDTTQSEKK 929
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242024934|ref|XP_002432881.1| 150 kDa oxygen-regulated protein precursor, putative [Pediculus humanus corporis] gi|212518390|gb|EEB20143.1| 150 kDa oxygen-regulated protein precursor, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/886 (53%), Positives = 633/886 (71%), Gaps = 23/886 (2%)
Query: 1 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 60
M L LC +V+ + + ++ G+AVMSVD GSEWMKVAIVSPGVPMEIALNKESKRKT
Sbjct: 1 MASPLRGLCFLLVISVIVVNNTNGVAVMSVDFGSEWMKVAIVSPGVPMEIALNKESKRKT 60
Query: 61 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 120
P +AF ER FGEDAQ I RFPSN YGY LDLLGK ID+P+V L+K RFPYY+I D
Sbjct: 61 PAFIAFRNDERLFGEDAQNIAVRFPSNGYGYLLDLLGKKIDNPLVNLYKERFPYYNIEED 120
Query: 121 EERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180
RGT+VFK + N + EEL+ MLLHKA+E+A SAGQVI +AV++VPG+FNQ+ER+++
Sbjct: 121 PVRGTVVFKHDSNTKFTPEELIGMLLHKAKEFAEESAGQVITDAVLVVPGFFNQVERRAL 180
Query: 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240
+ A L G+KVLQL+NDYTAVALNYGIF+ KDFN+T +++FYDMGA STT SIV+YQ+
Sbjct: 181 INAANLGGIKVLQLINDYTAVALNYGIFRSKDFNDTTQ-YILFYDMGASSTTASIVAYQM 239
Query: 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 300
VK K+RG +ET+PQ +V+GVGYDRTLGGLEMQ+RL+ L KKF E KKT D++ NPRA+
Sbjct: 240 VKQKDRGVLETNPQATVIGVGYDRTLGGLEMQLRLQKHLAKKFTENKKTKSDIYSNPRAM 299
Query: 301 AKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA 360
AKLFKEAGR+KNVLSAN EHFAQ+EGL+DE DFK VTR E E L EDLF RV P+EQA
Sbjct: 300 AKLFKEAGRVKNVLSANVEHFAQVEGLLDEEDFKTHVTREELEKLCEDLFARVKNPIEQA 359
Query: 361 LKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
LK+S + MD+ISQVILVGAGTRVPK+QE +T +V EL KN+NTDEAA +GAVYKAAD+S
Sbjct: 360 LKTSGITMDIISQVILVGAGTRVPKIQEILTNIVKKELGKNINTDEAAVMGAVYKAADIS 419
Query: 421 TGFKVKKFITKDIVLYPIQVEFER-ESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD 479
TGFKVKKFI KD VL+P+QV F++ +E+ + K IK+ LF N YPQKKILTFNK+V D
Sbjct: 420 TGFKVKKFINKDAVLFPVQVTFQKANNETDEIKYIKKTLFNVMNPYPQKKILTFNKHVND 479
Query: 480 FNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDE 539
FNFNV Y ++++L +I MLG +S + V + KH +N ESKGIKAHFAMDE
Sbjct: 480 FNFNVHYG-DMDYLPKNEIEMLGPLNLSLVHIHNVKDIIKKHEGKNVESKGIKAHFAMDE 538
Query: 540 SGILSLVNIELVVEK------QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEA----- 588
SG+L L+N++ V EK +E ES L KLG++ T LF S + + A
Sbjct: 539 SGLLYLLNVDYVAEKTVTDEPEEEEESTLKKLGSSFTKLFGGSDSQSEDAAKKGAEESSE 598
Query: 589 ------VDEGNKTAEEPS--KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPIS 640
D+ K++ + S KN + + +++ E+ T + KKPKIV +KE +S
Sbjct: 599 NLSEEKTDDEKKSSGKQSDGKNDENKDGKEKQGEDKQTGKNVTGTSGKKPKIVIIKENVS 658
Query: 641 ASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYS 700
A+ GV L ++Q+E S K+++LN+ ++ K RKEK+ N+LES +FDA K+E + Y
Sbjct: 659 ATYEDLGVPPLTDEQMEDSFKKIEALNENDNLKQRKEKSRNALESFVFDALQKIESDMYV 718
Query: 701 SVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPE 760
A +E + IV + E++NWL+E+ +NA+ADV + KL +I +L P+++R EH+ERPE
Sbjct: 719 QTATDDEKENIVKECQEVSNWLDEE-FNADADVYDAKLKQIKTLTGPLYKRVSEHEERPE 777
Query: 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKE 820
AL +L++ +N S F +++K + + D +F+++E+ +L+ +INET+ WK SE E
Sbjct: 778 ALAALHSMINGSQNFLDTVKTKTKEALDKGDEAIFTEVEINTLEKVINETQEWKTNSELE 837
Query: 821 QNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKK 866
Q++L + P +TI+SI EK+ AL+REV+YL NK+KLW KK
Sbjct: 838 QSKLPLTSPPKMTIKSITEKMAALDREVKYLVNKAKLWRPKKTDKK 883
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383847076|ref|XP_003699181.1| PREDICTED: hypoxia up-regulated protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/924 (50%), Positives = 650/924 (70%), Gaps = 48/924 (5%)
Query: 2 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 61
K+++ + S +++++TL +S G+AVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP
Sbjct: 5 KLNMTIIWSLLIIVITLIHNSSGVAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKTP 64
Query: 62 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 121
+AF GER+FGEDAQ++G + P +S+ Y LDLLGKSID+P+VQL+K RFPYYDI++DE
Sbjct: 65 VTIAFRNGERSFGEDAQVVGIKSPQSSFSYILDLLGKSIDNPMVQLYKKRFPYYDIISDE 124
Query: 122 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181
ER TI F+ + N Y EEL+A +LHK +E+A SA Q I+EAVI+VPG+FNQIER+++
Sbjct: 125 ERKTIAFRLDQNTTYTPEELLAQILHKGKEFAETSANQKISEAVIVVPGFFNQIERRALA 184
Query: 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241
+A +LAG+KVLQL+NDYTA+ALNYGIF+ K+ N+T +VMFYDMGA STT ++VSYQ V
Sbjct: 185 QAADLAGIKVLQLINDYTAIALNYGIFRSKEINDTAH-YVMFYDMGASSTTATVVSYQNV 243
Query: 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301
KTKE+GFVET+P VS+LGVGYDRTLGGLE+Q+RL+ L K+F+ + KT+ VF +P+A+A
Sbjct: 244 KTKEKGFVETNPHVSILGVGYDRTLGGLEVQLRLQHHLAKEFDALNKTSNSVFNSPKAMA 303
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
KLFKEAGR+KNVLSAN +HFAQ+EGLI+E DFKL VTR + E L DLF+RV P+ AL
Sbjct: 304 KLFKEAGRVKNVLSANTDHFAQVEGLIEEHDFKLQVTREKLEQLCSDLFERVQDPINIAL 363
Query: 362 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421
K+S + MDVISQV+LVGAGTR+PK+QE +++ + VELSKN+NTDEAA LGAVYKAADLS
Sbjct: 364 KTSGLTMDVISQVVLVGAGTRMPKIQEYLSQYLTVELSKNINTDEAATLGAVYKAADLSK 423
Query: 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
GFKVKKF+T+D VL+PIQ+ F+R ++ K +K+ LF N YPQKKI+TFNKY+ +F
Sbjct: 424 GFKVKKFVTRDAVLFPIQITFDRTVDN-KVKQVKKSLFSKMNPYPQKKIITFNKYLDNFQ 482
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F+++YA E+++L P ++A +G IS +SGV+EA KH +E AESKGIKAHFAMD+SG
Sbjct: 483 FHINYA-ELDYLPPHEVAAIGNTNISTIILSGVAEALDKHIKEGAESKGIKAHFAMDDSG 541
Query: 542 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRSKTDEN--EKPINEAVDEGNKT 595
IL+LVN+ELV EK + E S LG+T++ LF+ S+ E EKP+ E + ++
Sbjct: 542 ILNLVNVELVSEKSSSTSDEEEGTFSILGSTISKLFAGSEDKEGKAEKPVKEDIKPVHEE 601
Query: 596 AEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPK--------------IVTVKEPISA 641
E P ESQ+++ +++ K T DK IVT+KEPI A
Sbjct: 602 PEYP-------ESQKETEDKTKKQNETTTTEDKAANKTEKVEKEKEKKATIVTIKEPIKA 654
Query: 642 SETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSS 701
E + G L ++ S KL L+ + K R+E ALN+LE+ + DA+ +LE EEY+
Sbjct: 655 DEIKLGPQILFGDKLVDSRDKLHRLDVYDFEKTRRETALNNLETFIIDAQQRLESEEYAG 714
Query: 702 VAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEA 761
A E+++I+ EI+ WL EDG+ A A+V E KL+E+ L ++ER EH+ERPE
Sbjct: 715 AATSKEAESILKACSEISEWLYEDGFTATAEVYEEKLSELQKLTNDVYERVYEHRERPEV 774
Query: 762 LKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQ 821
LK + + LN S TF N++KNLSL++ ++F+ +E+++L+ +INET+ + + K
Sbjct: 775 LKGMTSMLNASTTFLNNMKNLSLSS------DIFTQVEIETLEKVINETQEYYDTVVKSF 828
Query: 822 NQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKD 881
+ + + IR I +K+ L+REV+YL NK+K+W + K+D N
Sbjct: 829 AETALHESVTYKIRDIAKKMAVLDREVKYLINKAKIW------------RPKQDAATNHT 876
Query: 882 SDKTKPSETEQSKPEEQPAGDQEP 905
+ ++ + + + E P D +P
Sbjct: 877 ASTSENATDTKEQSESVPKTDSQP 900
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345491538|ref|XP_003426636.1| PREDICTED: hypoxia up-regulated protein 1-like isoform 4 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/935 (51%), Positives = 645/935 (68%), Gaps = 38/935 (4%)
Query: 2 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 61
K+ ++ L + LL+ +YG+AVMS+D+GSEWMK+AIVSPGVPMEIALNKESKRKTP
Sbjct: 6 KLPMMFLALLAIGLLS--SQAYGLAVMSIDIGSEWMKIAIVSPGVPMEIALNKESKRKTP 63
Query: 62 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 121
++F GERTFGEDAQ++GTRFP NS+ Y LDL+GK ID+P+VQL+K RFPYYDI AD
Sbjct: 64 VTISFRDGERTFGEDAQVVGTRFPKNSFSYILDLIGKPIDNPIVQLYKKRFPYYDIEADT 123
Query: 122 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181
ER TIVF+ + + Y EEL+A LL+KA+E+A SAGQ INEAVI VPGYFNQ ER ++L
Sbjct: 124 ERNTIVFRLDKDTTYTPEELLAQLLYKAKEFAQNSAGQKINEAVITVPGYFNQAERLALL 183
Query: 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241
+A ELA +KVLQL NDY+AVALNYGIF K+ N+T ++MFYDMGA STT ++V YQ +
Sbjct: 184 QAAELADIKVLQLFNDYSAVALNYGIFHHKEINDT-AHYIMFYDMGASSTTATVVGYQNI 242
Query: 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301
KTKERGFVETHPQVS+LGVGYDRTLGGLEMQ+RLRD+L K+F+ MKKT VFENPRA+A
Sbjct: 243 KTKERGFVETHPQVSILGVGYDRTLGGLEMQLRLRDYLAKEFDAMKKTKNSVFENPRALA 302
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
KLFKE+GRLKNVLSAN +H+AQIEGL+D+ DF+L VTR +FE L DLFDRV PV+ AL
Sbjct: 303 KLFKESGRLKNVLSANADHYAQIEGLLDDQDFRLQVTREKFEELCADLFDRVSNPVKTAL 362
Query: 362 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421
++S + MD+ISQV+LVGAGTRVPKVQEK++ V ELSKN+NTDEAAALGAVYKAADLS
Sbjct: 363 ETSGLTMDIISQVVLVGAGTRVPKVQEKLSAFVKTELSKNINTDEAAALGAVYKAADLSQ 422
Query: 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
GFKVKKFITKD VL+PIQ+ F+R + K ++R LF N YPQKKI+TFNK+ DF+
Sbjct: 423 GFKVKKFITKDAVLFPIQIVFDRTVDD-KVKQVRRTLFSKMNAYPQKKIITFNKHNQDFS 481
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F V+YA E+++L E+IA +G IS ++GV+EA KH +E ESKGIKAHF+MDESG
Sbjct: 482 FEVNYA-ELDYLPKEEIAAIGNLNISTITLTGVAEALAKHAKEGGESKGIKAHFSMDESG 540
Query: 542 ILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEK-------PINEAVDEGNK 594
IL+LVN+ELV EK TS+ + + N+K P E + ++
Sbjct: 541 ILNLVNVELVSEK---------------TSIAADEEEGSNDKEPEKVEEPPKEDIKPVHE 585
Query: 595 TAEEPS-----KNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVS 649
E P + + + EE +N T+ D +KKP IVT+KEPI A E + G
Sbjct: 586 EPEYPGLKKEAEEKAKANNDSKPTEEKAENKTEKADKEKKPTIVTIKEPIEAKELKLGPQ 645
Query: 650 TLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESK 709
L+ ++ S KL +LN + K ++E ALN+LES + DA+ KLE +EY + +++
Sbjct: 646 MLSNDKLATSQEKLQALNAYDKEKAKRESALNNLESFVIDAQQKLESDEYKAAIIAEDAE 705
Query: 710 TIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNAL 769
I +E++ WL E+G+ A A+ E KL ++ L ++ER EH+ERPEALK + + L
Sbjct: 706 KIKQACNEVSEWLYEEGFEAPAETYEQKLTDLQKLTGDLYERVFEHRERPEALKGMVSML 765
Query: 770 NVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDP 829
N S F ++++NL+++ +F+ +E+++L+ INET+ +++ K ++ K +P
Sbjct: 766 NGSRVFLDNMRNLNVSA------EIFTQVEIETLEKAINETQEYRDVVVKVTSETKLYEP 819
Query: 830 IVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSE 889
+V +R I K+ L+REV+YL NK+K+W K +T + E+K + DS+ +
Sbjct: 820 VVYKVRDIANKMALLDREVKYLVNKAKIWKPKQEATKNNTEETGENKTNSGDSEAETKTS 879
Query: 890 TEQSKPEEQPAGDQEPLTPKPSPSPVDETTTPEDK 924
+ K E + + T + P +TT E K
Sbjct: 880 DNKDKAESERDDSETIETEETLELPPSDTTQSEKK 914
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328784616|ref|XP_624153.3| PREDICTED: hypoxia up-regulated protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/919 (51%), Positives = 647/919 (70%), Gaps = 45/919 (4%)
Query: 1 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 60
+ +S++ L ++ ++T +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKT
Sbjct: 6 INMSIIWLL--LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKT 63
Query: 61 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 120
P +AF GER+FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYDI++D
Sbjct: 64 PVTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYDIISD 123
Query: 121 EERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180
EER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIER ++
Sbjct: 124 EERKTITFRLDENTTYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIERTAL 183
Query: 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240
++A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IVSYQ
Sbjct: 184 MQAADLAGIKVLQLINDYTAVALNYGIFRSKEINDTAH-YVMFYDMGASSTTATIVSYQN 242
Query: 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 300
VKTKE+GF+ET+P V++LGVGYDRTLGGLE+QIRL+ +L K+F+ + KT VF N RA+
Sbjct: 243 VKTKEKGFIETNPHVTILGVGYDRTLGGLEVQIRLQHYLAKEFDALNKTKNSVFSNVRAM 302
Query: 301 AKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA 360
AKLFKEAGR+KNVLSAN +HFAQIEGLIDE+DF+L VTR + E L DLF+RV P++ A
Sbjct: 303 AKLFKEAGRVKNVLSANTDHFAQIEGLIDEVDFRLQVTREKLEQLCTDLFERVTNPIKIA 362
Query: 361 LKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
LK+S + MD ISQV+LVGA TR+PK+QE +++ + +ELSKN+NTDEAA LGAVYKAADLS
Sbjct: 363 LKTSGLTMDAISQVVLVGAATRMPKIQEHLSQYLTIELSKNINTDEAAVLGAVYKAADLS 422
Query: 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDF 480
GFKVKKFITKD VL+PI + F+R + + K +K+ LF N YPQKKI+TFNKY +F
Sbjct: 423 KGFKVKKFITKDAVLFPIHIVFDR-TVNNRVKQVKKSLFNKMNPYPQKKIITFNKYTENF 481
Query: 481 NFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDES 540
F+++YA E+++L +IA +G +S +SG++EA KH ++ AESKGIKAHFAMDES
Sbjct: 482 QFHINYA-ELDYLPFNEIAAIGNFNLSTITLSGITEALDKHLKDGAESKGIKAHFAMDES 540
Query: 541 GILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFS--RSKTDENEKPINEAVDEGNK 594
GIL+LVN+ELV EK A ES S LG+T++ LF+ K ++E+P+ E + K
Sbjct: 541 GILNLVNVELVSEKSSLAPDEEESTFSILGSTISKLFAGLEDKEGKSEEPLKEDI----K 596
Query: 595 TAEEPSKNVNSTESQQQSAEESVKNATQTPDADKK---------------PKIVTVKEPI 639
E S+ +E Q+++ ++ K D K IVT+KEPI
Sbjct: 597 PVHEESE---YSELQKETEDKMKKKNDSMITEDNKIVNKTEKIEKEKEKKATIVTIKEPI 653
Query: 640 SASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEY 699
A E + G L+ ++ KS +KL L+ + K ++E ALN+LE+ + DA+ KLE EEY
Sbjct: 654 KADEIKLGSQILSGDKLVKSQAKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLESEEY 713
Query: 700 SSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERP 759
++VA E+++I+ EI+ WL EDG++ A++ E KL+ + L ++ER EH+ERP
Sbjct: 714 ATVATSQEAESILKACSEISEWLYEDGFSVTAEIYEEKLSYLQKLTNDVYERVYEHRERP 773
Query: 760 EALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEK 819
EALK + + LN S TF N+++NLSL++ +F+ IE+++L+ +INET+ + K
Sbjct: 774 EALKGMTSMLNASTTFLNNMRNLSLSS------EIFTQIEIETLEKVINETQEYYNTIVK 827
Query: 820 EQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKN 879
+ +P+ +R IV K+ L+REV YL NK+K+W K+ES + E N
Sbjct: 828 SFTETALYEPVKYKVRDIVNKMALLDREVNYLINKAKIW----RPKQESITNHTES--IN 881
Query: 880 KDSDKTKPSETEQSKPEEQ 898
+ + +K SKPE Q
Sbjct: 882 ETATNSKEGPESDSKPESQ 900
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029680|ref|XP_003698495.1| PREDICTED: hypoxia up-regulated protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/919 (51%), Positives = 650/919 (70%), Gaps = 45/919 (4%)
Query: 1 MKISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT 60
+ +S++ L ++ ++T +HS GIAVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKT
Sbjct: 6 INMSIIWLL--LITIVTFIDHSNGIAVMSIDIGSESMKVAIVSPGVPMEIALNKESKRKT 63
Query: 61 PTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD 120
P +AF GER+FGEDAQ++G R P NS+ Y LDLLGK ID+P+V+L+K RFPYYDI++D
Sbjct: 64 PVTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKYIDNPIVELYKKRFPYYDIISD 123
Query: 121 EERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180
EER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIER ++
Sbjct: 124 EERKTITFRLDENITYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIERTAL 183
Query: 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240
++A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IVSYQ
Sbjct: 184 MQAADLAGIKVLQLINDYTAVALNYGIFRSKEINDT-AHYVMFYDMGASSTTATIVSYQN 242
Query: 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 300
+KTKE+GF+ET+P V++LGVGYDRTLGGLE+QIRL+ +L K+F+ + KT VF N RA+
Sbjct: 243 IKTKEKGFIETNPHVTILGVGYDRTLGGLEVQIRLQHYLAKEFDALNKTKNSVFSNVRAM 302
Query: 301 AKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA 360
AKLFKEAGR+KNVLSAN +HFAQIEGLIDE+DF+L VTR + E L DLF+RV P++ A
Sbjct: 303 AKLFKEAGRVKNVLSANTDHFAQIEGLIDEVDFRLQVTREKLEQLCTDLFERVANPIKIA 362
Query: 361 LKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
LK+S + MD ISQV+LVGA TR+PK+QE +++ + VELSKN+NTDEAA LGAVYKAADLS
Sbjct: 363 LKTSGLTMDAISQVVLVGAATRMPKIQEHLSQYLTVELSKNINTDEAAVLGAVYKAADLS 422
Query: 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDF 480
GFKVKKF+TKD VL+PI + F+R + + K +K+ LF N YPQKKI+TFNKY +F
Sbjct: 423 KGFKVKKFVTKDAVLFPIHIVFDR-TVNNRIKQVKKSLFNKMNPYPQKKIITFNKYTENF 481
Query: 481 NFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDES 540
F+++YA E+++L +IA +G +S +SG++EA KH ++ AE+KGIKAHFAMDES
Sbjct: 482 QFHINYA-ELDYLPFNEIAAIGNFNLSTITLSGITEALDKHLKDGAENKGIKAHFAMDES 540
Query: 541 GILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFS--RSKTDENEKPINEAVDEGNK 594
GIL+LVN+ELV EK A ES S LG+T++ LF+ K ++E+P+ E + K
Sbjct: 541 GILNLVNVELVSEKSSLAPDEEESTFSILGSTISKLFAGLEDKEGKSEEPLKEDI----K 596
Query: 595 TAEEPSKNVNSTESQQQSAEESVKNATQTPDADKK---------------PKIVTVKEPI 639
E S+ +E Q+++ ++ K D K IVT+KEPI
Sbjct: 597 PVHEESE---YSELQKETEDKMKKKNDSMITEDNKIVNKTEKIEKEKEKKATIVTIKEPI 653
Query: 640 SASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEY 699
A E + G L+ ++ +SL+KL L+ + K ++E ALN+LE+ + DA+ KLE EEY
Sbjct: 654 KADEIKLGSQILSGDKLVESLAKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLESEEY 713
Query: 700 SSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERP 759
+ VA E+++I+ EI+ WL EDG++ A++ E KL+ + L ++ER EH+ERP
Sbjct: 714 AVVATSQEAESILKACSEISEWLYEDGFSVTAEIYEEKLSYLQKLTNDVYERVYEHRERP 773
Query: 760 EALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEK 819
EALK + + LN S TF N+++NLSL++ +F+ IE+++L+ +INET+ + + K
Sbjct: 774 EALKGMTSMLNASTTFLNNMRNLSLSS------EIFTQIEIETLEKVINETQEYYDTIVK 827
Query: 820 EQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKN 879
+ +P+ +R IV K+ L+REV YL NK+K+W K+EST+ E+ +
Sbjct: 828 SFTETALYEPVKYKVRDIVNKMALLDREVNYLINKAKIW----RPKQESTTNHTENINET 883
Query: 880 KDSDKTKPSETEQSKPEEQ 898
+ K +P SKPE +
Sbjct: 884 TTNSKEEPE--SDSKPESE 900
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328711504|ref|XP_001946466.2| PREDICTED: hypoxia up-regulated protein 1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/967 (50%), Positives = 659/967 (68%), Gaps = 45/967 (4%)
Query: 1 MKISLVTLCSSVVLLLTLFEH---SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESK 57
M I +++ + L L H +G+AVMSVD+GSEWMKVAIVSPGVPMEIALNKESK
Sbjct: 1 MGIPFWKCVTALTMFLVLSLHIANVHGLAVMSVDIGSEWMKVAIVSPGVPMEIALNKESK 60
Query: 58 RKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDI 117
RKTPT +AF GERTFGEDA +G RFPSN Y YFLDLLGK ID+P+V L+K RFPYY+I
Sbjct: 61 RKTPTAIAFRNGERTFGEDALTVGVRFPSNCYIYFLDLLGKKIDNPIVDLYKKRFPYYNI 120
Query: 118 VADEERGTIVFKTNDNELYHV-EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 176
+ D +R T++FK +++ Y EELVAM+L KARE+A SAGQ INEAVI VPGYF Q E
Sbjct: 121 IPDPKRNTVLFKHGESDDYFSPEELVAMMLEKAREFAQDSAGQAINEAVISVPGYFGQAE 180
Query: 177 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236
R +MLKA E+AG+KVLQL+N YTA ALNYGIF+ K FNET P+++MFYDMGA+ T VS+V
Sbjct: 181 RTAMLKAAEIAGIKVLQLINSYTAAALNYGIFRTKSFNETTPMYMMFYDMGAYGTQVSVV 240
Query: 237 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 296
SYQ++K+K+R E P ++VLGVGY+R LGGLEMQ+RLRD+L KFN +K T DV +N
Sbjct: 241 SYQLIKSKDRIAPELQPHLAVLGVGYERNLGGLEMQLRLRDYLAAKFNNLKLTPNDVTKN 300
Query: 297 PRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYP 356
R++AKLFKEAGRLKNVLSAN EHFAQIEGLIDE D ++ VTR E E L +DLFD+V P
Sbjct: 301 TRSMAKLFKEAGRLKNVLSANTEHFAQIEGLIDEKDMRIKVTREELEELCKDLFDKVVLP 360
Query: 357 VEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV--GVELSKNLNTDEAAALGAVY 414
++AL++S + +++I QV+L GAGTRVP+VQ+++ K + L ++LNTDEA+ALGA Y
Sbjct: 361 AKRALEASGLTIELIEQVMLSGAGTRVPRVQDRLVKDLKSNQPLGRSLNTDEASALGAAY 420
Query: 415 KAADLSTGFKVKKFITKDIVLYPIQVEFERE--SESGDTKIIKRMLFGPSNTYPQKKILT 472
KAADLS GFKVK FITKD L+PIQV F++E E+ K +KR+LFG N YPQ+KI+T
Sbjct: 421 KAADLSNGFKVKAFITKDATLFPIQVTFDKEVIDENKAAKQVKRILFGHMNPYPQRKIIT 480
Query: 473 FNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKH-NEENAESKGI 531
FNK+ DF+F V YA E+ HL+ +I LG+ +S ++GV +A+ K+ +E A++KGI
Sbjct: 481 FNKHQQDFDFTVGYA-ELGHLDENEIKCLGSLSLSNIKLNGVRDAYSKYQGQEGADTKGI 539
Query: 532 KAHFAMDESGILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLF-SRSKTDENEKPIN 586
KAHFAMD+SG+L L N+EL+VEK A ES LSK+GNT+++LF + + EKP++
Sbjct: 540 KAHFAMDDSGLLVLQNVELLVEKTVTADTEEESTLSKIGNTISNLFKGPEEVLKEEKPVH 599
Query: 587 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTP--DADKKPKIVTVKEPISASET 644
EA +E + + N+ Q ++ E VK P D+ K K+VTVKE I +
Sbjct: 600 EAPEEDPISQAPNNTTNNTDTFDQTNSTEQVKLNDTIPISDSKKNLKVVTVKETIDVNHE 659
Query: 645 RYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAA 704
V + ++ S++K+ L +I+ AK RKE +LN+LE+ + + + KLE +YSS A
Sbjct: 660 YLFVLPAQDDDLQSSINKIAGLKEIDLAKSRKETSLNNLETAIIETREKLEQPDYSSSAT 719
Query: 705 PNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKS 764
E+++I+DK EI++WLE+DG+ AEA+VL++K +++ +V+P+WER EH ERP L++
Sbjct: 720 EIETRSILDKCSEISDWLEDDGFGAEAEVLDSKFDDLKKIVLPVWERTFEHAERPSRLEA 779
Query: 765 LNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQL 824
LN+ALN S +F IKN +L D F+ +E+ +LD LI+E WK+K +EQ +L
Sbjct: 780 LNSALNNSNSFLEKIKNTTL------DDTPFTQVEIDTLDKLISEITSWKDKQVEEQEKL 833
Query: 825 KKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKK------ESTSKKKEDKPK 878
KS VLTI++I K ++ERE+RYL K W ++ T +K P+
Sbjct: 834 PKSVDPVLTIQTIAIKHSSIEREMRYLMTKFTSWKPKKKEEPKVKAPTSQTDNEKAKTPE 893
Query: 879 NKDSDKT----------KPSETEQSKPEEQPAGDQEPL---TPKPSPSPVDETTTPE--- 922
+D+D T K + E S E A + PL PKP+ P+ E T E
Sbjct: 894 EQDNDSTVKTNAHDDVDKSTAHEPSNTIEDNAESESPLKTDKPKPTELPIVEPTKTEEKR 953
Query: 923 DKTKTEL 929
D T TEL
Sbjct: 954 DDTHTEL 960
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|403183091|gb|EJY57847.1| AAEL017263-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/930 (49%), Positives = 628/930 (67%), Gaps = 24/930 (2%)
Query: 7 TLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF 66
L + V L L + G AVMSVDLGSEWMK+ +VSPGVPMEIALNKESKRKTPT +AF
Sbjct: 13 CLLLATVAFLALLNPTNGAAVMSVDLGSEWMKIGVVSPGVPMEIALNKESKRKTPTTIAF 72
Query: 67 HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI 126
G+R GEDAQ +G RFP+N+YGY +DLLGK++D P+VQL++ RFPYYDI+ D R T+
Sbjct: 73 RNGDRLIGEDAQTLGVRFPANNYGYLIDLLGKTVDHPMVQLYRKRFPYYDIIEDPTRKTV 132
Query: 127 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 186
VFK N +E Y +EEL+A LL A+ YA S GQ I E VI+VPG+F Q ERQ+++ A +L
Sbjct: 133 VFK-NGDEQYTIEELIAQLLQVAKGYAEDSTGQSITECVIVVPGFFGQAERQALVSAAKL 191
Query: 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 246
A LKVLQL+NDYTAV LNYGIF+RK+FNET + +FYDMGA+ TT S++SYQ+VK K
Sbjct: 192 ANLKVLQLINDYTAVGLNYGIFRRKEFNETAQ-YFVFYDMGAYKTTASVISYQLVKDK-- 248
Query: 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKE 306
E P V VLGVGYDRTLGGLEMQ+RLRD+LG++FN+M KT DVF NPRA+AKLFKE
Sbjct: 249 ATKEILPVVQVLGVGYDRTLGGLEMQVRLRDYLGQQFNKMGKTKTDVFTNPRAMAKLFKE 308
Query: 307 AGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV 366
AGRLKNVLSAN EH+AQIEGL+DE DF+LLVTR +FE L +DLF R+ P+++AL S +
Sbjct: 309 AGRLKNVLSANTEHYAQIEGLLDEQDFRLLVTRDQFEELCKDLFARITAPIDRALSLSGL 368
Query: 367 PMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVK 426
+D+++QV+L G TRVPKVQE + + EL+KNLN DEAA +GAVY+AADL+TGFKVK
Sbjct: 369 TLDIVNQVVLFGGNTRVPKVQEILKAHIKQELAKNLNADEAACMGAVYRAADLATGFKVK 428
Query: 427 KFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSY 486
KF+ KD VL+PIQV F RE ESG +++++R LFG N YPQKK++TFNK+ DF+F V Y
Sbjct: 429 KFVVKDAVLFPIQVAFAREGESGQSRLVRRTLFGAMNAYPQKKVITFNKHTDDFDFAVDY 488
Query: 487 ASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLV 546
A + +I LG+ ++K ++ V++ H +N ESKGIKAHF +D+SG+ SL
Sbjct: 489 ADLESVVGKAEIENLGSLNLTKVSLTKVAKKANAHKADNVESKGIKAHFMLDDSGLFSLA 548
Query: 547 NIELVVEKQ--EAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT-AEEPSKNV 603
N+ELV EK E ES L KLGNT++ LFS D E E E KT +EE S +
Sbjct: 549 NVELVFEKTVVEEDESTLQKLGNTISKLFS---GDSKEDATTEGEKEAEKTSSEEKSNDA 605
Query: 604 NSTESQQQSAE-ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662
E+ S + E+ KN T+ KPKIVT+KE I + +S L Q E S+ K
Sbjct: 606 TKAENSTLSGDSEAAKNKTE------KPKIVTIKEEIPSRVEVLYISPLEGSQYEASIKK 659
Query: 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWL 722
+ +LN IE +K R+E ALN+LES + DA+ KL+ EEYSS A E+ +I E++ WL
Sbjct: 660 IKALNDIEESKKRRETALNALESFVIDAQVKLDEEEYSSCATQEEADSIRKHCSEVSEWL 719
Query: 723 EEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL 782
EDG +A+A+ E KL+E+ + ++ RH EH+ERPEAL +L + + F + +N
Sbjct: 720 YEDGSDADAETYEKKLDELQTAANVVYARHWEHKERPEALSALKKMIEGADGFLDKARNF 779
Query: 783 SLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842
+ N +D +F+ +E+ +L+ +I ET W++ EQ ++ ++ P+ LT++ I +K+
Sbjct: 780 TKEGNPEKD--VFTQVEIDTLERVIKETIEWEKVEVAEQKKIARNQPVRLTVKDITDKMA 837
Query: 843 ALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPSE---TEQSKPEEQP 899
L+REV+YL NK KLW + +K K + +++++ E E++ + +
Sbjct: 838 LLDREVKYLVNKLKLWRPKVKPTPPPKVEKNTSKEEEQNTEEIVAEEEQVIEETPKQSEE 897
Query: 900 AGDQEPLTPKPSPSPVDETTTPEDKTKTEL 929
+EP + PS +E++ ED TEL
Sbjct: 898 EASEEPNVDEIKPSKTEESS--EDDQHTEL 925
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350410432|ref|XP_003489043.1| PREDICTED: hypoxia up-regulated protein 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/916 (50%), Positives = 651/916 (71%), Gaps = 30/916 (3%)
Query: 2 KISLVTLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTP 61
K+++ + ++ + + ++S G+AVMS+D+GSE MKVAIVSPGVPMEIALNKESKRKTP
Sbjct: 5 KLNMSIIWLLLITIASFIDYSNGVAVMSIDMGSESMKVAIVSPGVPMEIALNKESKRKTP 64
Query: 62 TLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADE 121
+AF GER+FGEDAQ++G R P NS+ Y LDLLGKSID+P+V+L+K RFPYY I++D+
Sbjct: 65 VTIAFRNGERSFGEDAQVVGIRSPQNSFSYILDLLGKSIDNPMVELYKKRFPYYHIISDD 124
Query: 122 ERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181
ER TI F+ ++N Y EEL+A +LHK +E+A SAGQ I+EAVI VPG+FNQIER++++
Sbjct: 125 ERKTIAFRLDENTTYTPEELLAQILHKGKEFAENSAGQKISEAVITVPGFFNQIERRALM 184
Query: 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241
+A +LAG+KVLQL+NDYTAVALNYGIF+ K+ N+T +VMFYDMGA STT +IVSYQ V
Sbjct: 185 QAADLAGIKVLQLINDYTAVALNYGIFRSKEINDT-AHYVMFYDMGASSTTATIVSYQNV 243
Query: 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301
KTKE+GFVET+P V++LGVGYDR LGGLE+QIRL+ L K+F+ + KTT VF N RA+A
Sbjct: 244 KTKEKGFVETNPHVTILGVGYDRILGGLEVQIRLQHHLAKEFDALNKTTSSVFSNSRAMA 303
Query: 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQAL 361
KLFKEAGR+KNVLSAN +HFAQIEGLI+E DF+L VTR + E L DLF+RV P++ AL
Sbjct: 304 KLFKEAGRVKNVLSANTDHFAQIEGLIEEHDFRLQVTRDKLEELCADLFERVANPIKIAL 363
Query: 362 KSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421
K+S + MDVISQV+LVGA TR+PK+QE +++ + VELSKN+NTDEAAALGAVYKAADLS
Sbjct: 364 KTSGLTMDVISQVVLVGAATRMPKIQEHLSQYLTVELSKNINTDEAAALGAVYKAADLSK 423
Query: 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFN 481
GFKVKKF+TKD VL+PI + F+R ++ K +K+ LF N YPQKKI+TFNKY +F
Sbjct: 424 GFKVKKFVTKDAVLFPIHIVFDRTVDN-RVKQVKKSLFSKMNPYPQKKIITFNKYTENFQ 482
Query: 482 FNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESG 541
F+++YA E+++L+P +IA++G +S +SG++EA KH ++ AESKGIKAHFAMDESG
Sbjct: 483 FHINYA-ELDYLSPNEIAVIGNFNLSTITLSGINEALDKHAKDGAESKGIKAHFAMDESG 541
Query: 542 ILSLVNIELVVEKQEAA----ESPLSKLGNTLTSLFSRS-----KTDENEKPINEAVDEG 592
IL+LVN+ELV EK +A E S LG+T++ LF+ S KT+E+ K + V E
Sbjct: 542 ILNLVNVELVSEKSSSAPDEEEGTFSILGSTISKLFAGSEDKDGKTEESLKEDTKPVHEE 601
Query: 593 NKTAEEPSKNVNSTESQQQS--AEESVKN--ATQTPDADKKPKIVTVKEPISASETRYGV 648
+ ++ + T+ + +S AE+ N + +KKP I+T+KEPI A E + G
Sbjct: 602 PEYSDLKKEAEEKTKKKNESTIAEDKTLNKTEKVEKEKEKKPTIITIKEPIKADEIKLGS 661
Query: 649 STLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNES 708
L+ ++ +S KL L+ + K ++E ALN+LE+ + DA+ KLE EEY++ A E+
Sbjct: 662 QILSGDKLVESREKLHRLDVYDFEKTKRETALNNLETFIIDAQQKLESEEYAAAATSQEA 721
Query: 709 KTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNA 768
+ I+ EI+ WL EDG++ A++ E KL ++ L ++ER EH+ERPE LK + +
Sbjct: 722 ENILKACSEISEWLYEDGFSVTAEIYEEKLLQLQKLTNDVYERVYEHRERPEVLKGMTSM 781
Query: 769 LNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSD 828
LN S TF N+++NLSL++ +F+ +E+++L+ +INET+ + + K + +
Sbjct: 782 LNGSTTFLNNMRNLSLSS------EIFTQVEIETLEKVINETQEYYDTIIKSFAETALYE 835
Query: 829 PIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKEDKPKNKDSDKTKPS 888
+ +R I K+ L+REV+YL NK+K+W K+ES + E +N + K P
Sbjct: 836 TVKYKVRDIANKMALLDREVKYLINKAKIW----RPKQESATNHTESTNENATNTKEGP- 890
Query: 889 ETEQSKPEEQPAGDQE 904
+S+P + D E
Sbjct: 891 ---ESEPVLKSTADSE 903
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 929 | ||||||
| FB|FBgn0023529 | 923 | CG2918 [Drosophila melanogaste | 0.947 | 0.953 | 0.474 | 1.9e-211 | |
| UNIPROTKB|E1B748 | 1002 | HYOU1 "Uncharacterized protein | 0.614 | 0.569 | 0.522 | 8.8e-184 | |
| UNIPROTKB|F1SAI8 | 1000 | HYOU1 "Uncharacterized protein | 0.614 | 0.571 | 0.521 | 5e-179 | |
| UNIPROTKB|E9PL22 | 937 | HYOU1 "Hypoxia up-regulated pr | 0.863 | 0.855 | 0.453 | 2e-175 | |
| UNIPROTKB|F1NY05 | 986 | HYOU1 "Hypoxia up-regulated pr | 0.876 | 0.825 | 0.430 | 4.3e-157 | |
| ZFIN|ZDB-GENE-030131-5344 | 980 | hyou1 "hypoxia up-regulated 1" | 0.855 | 0.811 | 0.428 | 2.1e-155 | |
| UNIPROTKB|Q5ZLK7 | 1002 | HYOU1 "Hypoxia up-regulated pr | 0.882 | 0.818 | 0.424 | 1.2e-152 | |
| UNIPROTKB|F1NJZ5 | 980 | HYOU1 "Hypoxia up-regulated pr | 0.880 | 0.834 | 0.421 | 4.1e-152 | |
| UNIPROTKB|F1LN18 | 999 | Hyou1 "Hypoxia up-regulated pr | 0.857 | 0.797 | 0.425 | 4.7e-151 | |
| MGI|MGI:108030 | 999 | Hyou1 "hypoxia up-regulated 1" | 0.870 | 0.809 | 0.426 | 7.6e-151 |
| FB|FBgn0023529 CG2918 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
Identities = 430/906 (47%), Positives = 596/906 (65%)
Query: 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 81
S G AVMSVDLGSEWMKV +VSPGVPMEIALN+ESKRKTP ++AF G RT GEDAQ IG
Sbjct: 17 SQGAAVMSVDLGSEWMKVGVVSPGVPMEIALNRESKRKTPAILAFRDGTRTIGEDAQTIG 76
Query: 82 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 141
+ P+++YGY LDLLGK+ID+P+V L++ RFPYY+IV D ER T+VF+ +D + + VEEL
Sbjct: 77 IKDPNSAYGYLLDLLGKTIDNPIVDLYRKRFPYYNIVGDPERNTVVFRKSDTDEFSVEEL 136
Query: 142 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 201
VA LL KA+++A S Q I E V+ VPGYF Q ER+++L A +LA LKVLQL+NDY AV
Sbjct: 137 VAQLLVKAKQFAQESVQQPITECVLTVPGYFGQAEREALLSAAQLANLKVLQLINDYAAV 196
Query: 202 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261
ALNYG+F R + NET + +FYDMGA+ T+ ++VSYQ+VK K+ E +P V VLGVG
Sbjct: 197 ALNYGVFHRGEINETAQ-YFLFYDMGAYKTSAAVVSYQLVKDKQTR--EINPVVQVLGVG 253
Query: 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHF 321
YDRTLGGLE+Q+RLRD+L ++FN +KKT DV +PRA+AKLFKEAGRLKNVLSAN E F
Sbjct: 254 YDRTLGGLEIQLRLRDYLAQEFNALKKTKTDVTTSPRALAKLFKEAGRLKNVLSANTEFF 313
Query: 322 AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
AQIE LI++IDFKL VTR + E L EDL+ R P+E+AL SS + +DVI+QVIL G GT
Sbjct: 314 AQIENLIEDIDFKLPVTREKLEQLCEDLWPRATKPLEEALASSHLSLDVINQVILFGGGT 373
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
RVP+VQE I V+ EL KNLN DE+A +GAVYKAADLS GFKVKKF+ KD L+P+QV
Sbjct: 374 RVPRVQETIKAVIKQELGKNLNADESATMGAVYKAADLSAGFKVKKFVVKDATLFPLQVS 433
Query: 442 FERESESGDT-KIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 500
FER+ G K +KR LF N YPQKK++TFNK+ DF F V+YA +++ + E+IA
Sbjct: 434 FERDPGDGAAVKQVKRALFALMNPYPQKKVITFNKHTDDFEFYVNYA-DLDRYSKEEIAA 492
Query: 501 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQ----E 556
LG+ ++K + V E K +E ++KGIKA+F +D+SGI +E V EKQ +
Sbjct: 493 LGSLNVTKVQLKQVKELLEKSKKELVDNKGIKAYFYLDDSGIFRCTGVEYVYEKQKPEDD 552
Query: 557 AAE-SPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXXXX 615
A E S LSK G+TL+ LF++ + EK N +E EEPSK+ ++
Sbjct: 553 ADEDSTLSKFGSTLSKLFTK---EGEEKKDNSEQEEAANAGEEPSKSEDNEKAKEEDASK 609
Query: 616 XVKNATQTP-DADKKP---KIVTVKEPIS-ASETRYGVSTLNEKQVEKSLSKLDSLNQIE 670
K+ T D + K K+VTVK P++ S+T++ V + ++S++KL ++N+ E
Sbjct: 610 EQKSEESTKQDTEAKNETIKLVTVKSPVTYESQTQFVVPLVGSAY-DQSVAKLAAINKAE 668
Query: 671 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 730
+VR E A N+LE+ + + + KL+ E Y+ A E + ++ + + WL ED + +
Sbjct: 669 EQRVRLESAFNALEAHIIEVQQKLDEESYAKCATAEEKEKLLAECSTLGEWLYEDLEDPK 728
Query: 731 ADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 790
A++ E KL ++ L RH EH+ERPEA+K+L ++ + F + +NL+ +TN +
Sbjct: 729 AEIYEEKLAQLKKLSNVFLARHWEHEERPEAIKALKGMIDGAEKFLVTGRNLTKDTNPEK 788
Query: 791 DLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRY 850
D+ F+ +E+ +LD +I ET W + Q +L K+ I LT++ I +K+ L+REV+Y
Sbjct: 789 DV--FTQVEIDTLDKVITETNAWLKTETAAQKKLAKNADIRLTVKDITDKMSLLDREVKY 846
Query: 851 LENKSKLWMASLXXXXXXXXXXXXXXXXXXXXXXTKPSETEQSKPE--EQPAGDQEP--- 905
L NK K+W + TK + EQ + + ++ +QEP
Sbjct: 847 LVNKIKIWKPKVKPAAEKEKKKEEEVVASGSGDDTKSEDAEQQQEQATKEEQQEQEPVDE 906
Query: 906 LTPKPS 911
+TP P+
Sbjct: 907 ITPTPA 912
|
|
| UNIPROTKB|E1B748 HYOU1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1451 (515.8 bits), Expect = 8.8e-184, Sum P(3) = 8.8e-184
Identities = 308/589 (52%), Positives = 409/589 (69%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK ++P V L+K+RFP +++ D +R T+ F+ + + EE+++M
Sbjct: 93 PKATLRYFQHLLGKQENNPHVALYKARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
LL+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 LLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTK+ G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTAQ-NIMFYDMGSGSTVCTIVTYQTVKTKDAGI---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L + FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTRAEFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRAEFEELCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E+G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEETGVRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN 602
ES L+KLGNT++SLF T + ++ + V E + E SK+
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGSTPDTKENGTDTVQEEEEGPAEGSKD 614
|
|
| UNIPROTKB|F1SAI8 HYOU1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1439 (511.6 bits), Expect = 5.0e-179, Sum P(2) = 5.0e-179
Identities = 307/589 (52%), Positives = 408/589 (69%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFFGDSAASMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK ++P V L+++RFP +++ D +R T+ F+ + + EE+++M
Sbjct: 93 PKATLRYFQHLLGKQENNPHVALYRARFPEHELGFDPQRQTVYFQISPQLQFSPEEVLSM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
LL+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 LLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMGA ST +IV+YQ VKTK+ G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---VQPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TL GLEM++RLR+ L + FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLXGLEMELRLREHLARLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTRAEFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRAEFEDLCADLFERVPGPVQQALQSAEMKLDEIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGVHSLKHNKRILFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFRKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKN 602
ES L+KLGNT++SLF T + ++ ++V E + E SK+
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGATPDAKENGTDSVQEEEEGPAEGSKD 614
|
|
| UNIPROTKB|E9PL22 HYOU1 "Hypoxia up-regulated protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1704 (604.9 bits), Expect = 2.0e-175, P = 2.0e-175
Identities = 384/846 (45%), Positives = 539/846 (63%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP +V + ER FG+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L+++RFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYQARFPEHELTFDPQRQTVHFQISSQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPVFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ+VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDIN-TTAQNIMFYDMGSGSTVCTIVTYQMVKTKEAGM---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLRERLAGLFNEQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLF+RV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VP+VQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPRVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVE 448
Query: 442 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGIHSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEK--Q 555
+ + G++ ++ + GV ++F K+ + ESKGIKAHF +DESG+LSL +E V E +
Sbjct: 508 LRVFGSQNLTTVKLKGVGDSFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 556 EAAE--SPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXX 613
++AE S L+KLGNT++SLF T P +A + G T ++PS+ +
Sbjct: 566 DSAEEESTLTKLGNTISSLFGGGTT-----P--DAKENGTDTVQKPSEKAEA-------- 610
Query: 614 XXXVKNATQTPDADKKPKIVTVK---EPISASETRYGVSTLNEKQVEKSLSKLDSLNQIE 670
+ P+ +KK K + E I + L E ++ +S+ KL L +
Sbjct: 611 --GPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSVQKLQDLTLRD 668
Query: 671 HAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 730
K +EKA NSLE+ +F+ + KL EY V+ + + I K+ + WLE++G A
Sbjct: 669 LEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAASTWLEDEGVGAT 728
Query: 731 ADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 790
+L+ KL E+ L ++ R E ++ PE L +L+N LN S F +K L E +
Sbjct: 729 TVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMF---LKGARL-IPEMD 784
Query: 791 DLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRY 850
+ F+++E+ +L+ +INET WK + EQ +L ++ VL + I K+ AL+REV+Y
Sbjct: 785 QI--FTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDREVQY 842
Query: 851 LENKSK 856
L NK+K
Sbjct: 843 LLNKAK 848
|
|
| UNIPROTKB|F1NY05 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 367/853 (43%), Positives = 519/853 (60%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A + +
Sbjct: 24 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 83
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE++ M
Sbjct: 84 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEMLGM 143
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TAVALN
Sbjct: 144 VLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALN 203
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMGA ST +IV+YQ VKTK+ G T PQ+ + G+G+DR
Sbjct: 204 YGVFRRKDINATAQ-NIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQLQIQGIGFDR 259
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQI 324
TLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VLSAN +H AQI
Sbjct: 260 TLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHMAQI 318
Query: 325 EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384
EGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QVILVG TRVP
Sbjct: 319 EGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQVILVGGATRVP 378
Query: 385 KVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFE 443
KVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVEF
Sbjct: 379 KVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDAAMFPIQVEFT 438
Query: 444 RESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIA 499
RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y ++ LN + +
Sbjct: 439 REVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-DLSFLNQDDLR 497
Query: 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VEKQ 555
+ G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E V VE +
Sbjct: 498 IFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVESVFETLVEDK 555
Query: 556 EAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSK--NVNSTXXXXXX 612
ES L+KLGNT++SLF T E + + ++V E ++ E +K +
Sbjct: 556 LEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEDAGEEQGEEKQ 615
Query: 613 XXXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 672
A P ++ K E A + + T+ E+++ KS + E
Sbjct: 616 QSPHPDQAEAVPPKEESQKNEE-GEKSEARDPKEDKETVKEEELSKSSGAGTAAKAEEEK 674
Query: 673 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-NWLEEDGWNAEA 731
K++ K + L+ + +L++ + + +E K+ + K+ ++T LE+ A
Sbjct: 675 KIKAPKK----QKLVHEITMELDVNDVPDLLE-DELKSSMKKLQDLTIRDLEKQEREKSA 729
Query: 732 DVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 790
+ LE+ + E + L + +ER E K L+ A N + + + T E +
Sbjct: 730 NSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASN-----WMEEEGYAAATKELK 784
Query: 791 DLNLFSDIEL-KSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRAL-EREV 848
D L +L ++L + E + W E+ ++ L S+ + R I E + E E+
Sbjct: 785 D-KLAELKKLCRNLFFRVEERRKWPERLAALESLLNHSNIFLKGARMIPESDQIFTEVEL 843
Query: 849 RYLE---NKSKLW 858
LE N++ +W
Sbjct: 844 GTLEKAINETTVW 856
|
|
| ZFIN|ZDB-GENE-030131-5344 hyou1 "hypoxia up-regulated 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
Identities = 360/841 (42%), Positives = 508/841 (60%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSEWMKVAIV PGVPMEI LNKES+RKTP V + ER FG+ A + +
Sbjct: 25 VAVMSVDLGSEWMKVAIVKPGVPMEIVLNKESRRKTPVAVCLKENERLFGDGALGVAVKN 84
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P Y + +LGK+ D+P V ++ FP + + DE+RGT+ FK ++ Y EEL+ M
Sbjct: 85 PKVVYRFLQSILGKTADNPQVAEYQKHFPEHQLQKDEKRGTVYFKFSEEMQYTPEELLGM 144
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP YFNQ ER+++L+A +AGLKVLQL+ND TAVALN
Sbjct: 145 ILNYSRTLAQDFAEQPIKDAVITVPAYFNQAERRAVLQAAHIAGLKVLQLINDNTAVALN 204
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ STT +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 205 YGVFRRKDINSTAQ-NIMFYDMGSGSTTATIVTYQTVKTKESG---TQPQLQIRGVGFDR 260
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQI 324
TLGG EM++RLRD L K FNE KK+ KDV +N RA+AKL KEA RLK VLSAN EH AQI
Sbjct: 261 TLGGFEMELRLRDHLAKLFNEQKKSKKDVRDNLRAMAKLLKEAQRLKTVLSANAEHTAQI 320
Query: 325 EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384
EGL+D+IDFK VTR+EFEAL EDLFDRV PV+QAL ++ + MD I QVILVG TRVP
Sbjct: 321 EGLMDDIDFKAKVTRSEFEALCEDLFDRVPGPVKQALAAAEMSMDEIEQVILVGGATRVP 380
Query: 385 KVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFE 443
KVQ+ + K VG E LSKN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVEF
Sbjct: 381 KVQDVLLKSVGKEELSKNINADEAAAMGAVYQAAALSKAFKVKPFLVRDAAVFPIQVEFS 440
Query: 444 RESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIA 499
RE+E D K +K R+LF YPQ+K++TFN+Y+ DF F ++Y ++ L+ + +
Sbjct: 441 RETEEEDGVKSLKHNKRILFQRMAPYPQRKVITFNRYIDDFVFYINYG-DLSFLSEQDMK 499
Query: 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVE---KQE 556
+ G++ ++ +SGV +F KH++ AESKGIKAHF MDESG+L L +E V E +++
Sbjct: 500 VFGSQNLTTVKLSGVGSSFKKHSD--AESKGIKAHFNMDESGVLILDRVESVFETIVEEK 557
Query: 557 AAESPLSKLGNTLTSLFSRSKTDENE---KPIN---EAVDEGNKTAEEPSKNVNSTXXXX 610
ES L+KLGNT++SLF ++ + +P+ E E K ++P K +
Sbjct: 558 EEESTLTKLGNTISSLFGGGSSEPSANVTEPVTDEEEVTPEAGKEQDQPEKQEETVQEKP 617
Query: 611 XXXXXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIE 670
+ K K E S + T +E++ KL ++I
Sbjct: 618 ETEEGKEAEPQAEEQKEDKEKAENQGETESEKTEKPEEKTTDEEKEADMKPKLQKKSKIS 677
Query: 671 HAKVRKEKALNS-LESLLFDAK-SKLELEEYSS--VAAPNESKTIVDK---IDEITNWLE 723
A + E +N L+ D + SK +L++ + + KT+ I E + L
Sbjct: 678 -ADIAVELEVNDVLDPSAEDMEGSKKKLQDLTDRDLEKQEREKTLNSLEAFIFETQDKLY 736
Query: 724 EDGWNAEADVLENKLNEINSL--VVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKN 781
+D + +A V E + +I+ V W ++ + LK + L K
Sbjct: 737 QDEY--QAVVTEEEKEQISGRLSVASSWMDEEGYRAGTKLLKEKLSELK------KLCKG 788
Query: 782 LSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSE--KEQNQLKKSDPIVLTIRSIVE 839
+ E + + D L +LD+++N + ++ + + E +Q+ +D + T+ ++
Sbjct: 789 MFFRVEERKK---WPD-RLAALDSMLNHSNIFLKSARLIPESDQIF-TDVELKTLEKVIN 843
Query: 840 K 840
+
Sbjct: 844 E 844
|
|
| UNIPROTKB|Q5ZLK7 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
Identities = 370/871 (42%), Positives = 518/871 (59%)
Query: 21 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 80
H+ +AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A +
Sbjct: 20 HTEPLAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGM 79
Query: 81 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEE 140
+ P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE
Sbjct: 80 SIKTPKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEE 139
Query: 141 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 200
++ M+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TA
Sbjct: 140 MLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTA 199
Query: 201 VALNYGIFKRKDFNETNPVH------VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 254
VALNYG+ K + P+H +MFYDMGA ST +IV+YQ VKTK+ G T PQ
Sbjct: 200 VALNYGVSGGKT---SMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQ 253
Query: 255 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVL 314
+ + G+G+DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VL
Sbjct: 254 LQIQGIGFDRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVL 312
Query: 315 SANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 374
SAN +H AQIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QV
Sbjct: 313 SANADHMAQIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQV 372
Query: 375 ILVGAGTRVPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDI 433
ILVG TRVPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D
Sbjct: 373 ILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDA 432
Query: 434 VLYPIQVEFERESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASE 489
++PIQVEF RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y +
Sbjct: 433 AMFPIQVEFTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-D 491
Query: 490 IEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 549
+ LN + + + G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E
Sbjct: 492 LSFLNQDDLRIFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVE 549
Query: 550 LV----VEKQEAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSKNVN 604
V VE + ES L+KLGNT++SLF T E + + ++V E ++ E +K
Sbjct: 550 SVFETLVEDKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEQ 609
Query: 605 STXXXXXXXXXXV-----KNATQTPDADKK----PKIVTVK-EPISASETRYGVSTLNEK 654
+ Q+P D+ PK + K E SE R E
Sbjct: 610 GVKQGQKSSAEDAGEEQGEEKQQSPHPDQAEAVPPKEESQKNEEGEKSEARDPKED-KET 668
Query: 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDK 714
E+ LSK A+ K+ + L+ + +L++ + + +E K+ + K
Sbjct: 669 VNEEELSKSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLLE-DELKSSMKK 727
Query: 715 IDEIT-NWLEEDGWNAEADVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALNVS 772
+ ++T LE+ A+ LE+ + E + L + +ER E K L+ A N
Sbjct: 728 LQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASN-- 785
Query: 773 VTFYNSIKNLSLNTNETEDLNLFSDIEL-KSLDTLINETKVWKEKSEKEQNQLKKSDPIV 831
+ + + T E +D L +L ++L + E + W E+ ++ L S+ +
Sbjct: 786 ---WMEEEGYAAATKELKD-KLAELKKLCRNLFFRVEERRKWPERLAALESLLNHSNIFL 841
Query: 832 LTIRSIVEKIRAL-EREVRYLE---NKSKLW 858
R I E + E E+ LE N++ +W
Sbjct: 842 KGARMIPESDQIFTEVELGTLEKAINETTVW 872
|
|
| UNIPROTKB|F1NJZ5 HYOU1 "Hypoxia up-regulated protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
Identities = 364/864 (42%), Positives = 520/864 (60%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVD+GSE MK+AIV PGVPMEI LNKES+RKTP VA + ER FG+ A + +
Sbjct: 3 LAVMSVDMGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVALKENERLFGDSALGMSIKT 62
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P ++ YF DLLGK ID+P V L++SRFP +++V DE+R T++FK + Y EE++ M
Sbjct: 63 PKVAFRYFQDLLGKQIDNPQVALYQSRFPEHELVKDEKRQTVIFKLSQTLQYSPEEMLGM 122
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP YFNQ ER+++L A +A LKVLQL+ND TAVALN
Sbjct: 123 VLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALN 182
Query: 205 YGIFKRKDF--NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
YG+ + + + ++MFYDMGA ST +IV+YQ VKTK+ G T PQ+ + G+G+
Sbjct: 183 YGVGGKTSMPLHSFSFQNIMFYDMGAGSTVCTIVTYQTVKTKDSG---TQPQLQIQGIGF 239
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
DRTLGGLEM++RLRD+L K FN+ + +KDV +NPRA+AKL KEA RLK VLSAN +H A
Sbjct: 240 DRTLGGLEMELRLRDYLAKLFND-QHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHMA 298
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D+IDFK V+R EFE L DLF RV PV+QAL S+ + +D I QVILVG TR
Sbjct: 299 QIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQVILVGGATR 358
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D ++PIQVE
Sbjct: 359 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFMVRDAAMFPIQVE 418
Query: 442 FERESESGD-TKIIK---RMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E D +K +K R+LF YPQ+K++TFN+Y DF F V+Y ++ LN +
Sbjct: 419 FTREVEEDDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYG-DLSFLNQDD 477
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G+ ++ + GV E+F KH++ ESKGIKAHF MDESG+LSL +E V VE
Sbjct: 478 LRIFGSLNLTTVRLKGVGESFKKHSDY--ESKGIKAHFNMDESGVLSLDRVESVFETLVE 535
Query: 554 KQEAAESPLSKLGNTLTSLFSRS-KTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXX 612
+ ES L+KLGNT++SLF T E + + ++V E ++ E +K
Sbjct: 536 DKLEEESTLTKLGNTISSLFGGGGHTPEAGENLTDSVQEEEESLAEAAKEEQGVKQGQKS 595
Query: 613 XXXXV-----KNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLN 667
+ Q+P D+ + V KE +E + K+ +K K + L+
Sbjct: 596 SAEDAGEEQGEEKQQSPHPDQA-EAVPPKEESQKNEEGEKSEARDPKE-DKETVKEEELS 653
Query: 668 QIEHA----KVRKEKALNS--LESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-N 720
+ A K +EK + + + L+ + +L++ + + +E K+ + K+ ++T
Sbjct: 654 KSSGAGTAAKAEEEKKIKAPKKQKLVHEITMELDVNDVPDLLE-DELKSSMKKLQDLTIR 712
Query: 721 WLEEDGWNAEADVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSI 779
LE+ A+ LE+ + E + L + +ER E K L+ A N +
Sbjct: 713 DLEKQEREKSANSLESFIFETQDKLYQEEYLFVSTEEEREEISKKLSEASN-----WMEE 767
Query: 780 KNLSLNTNETEDLNLFSDIEL-KSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIV 838
+ + T E +D L +L ++L + E + W E+ ++ L S+ + R I
Sbjct: 768 EGYAAATKELKD-KLAELKKLCRNLFFRVEERRKWPERLAALESLLNHSNIFLKGARMIP 826
Query: 839 EKIRAL-EREVRYLE---NKSKLW 858
E + E E+ LE N++ +W
Sbjct: 827 ESDQIFTEVELGTLEKAINETTVW 850
|
|
| UNIPROTKB|F1LN18 Hyou1 "Hypoxia up-regulated protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
Identities = 353/830 (42%), Positives = 502/830 (60%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L++SRFP +++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELNVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T ++MFYDMG+ ST +IV+YQ VKTKE G T PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTAQ-NIMFYDMGSGSTVCTIVTYQTVKTKEAG---TQPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXX 613
ES L+KLGNT++SLF + + ++ +AV E ++ E SK+ +
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 614 XXX-VKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 672
+++ +Q P ++ PK +E + E G + +K EK + + +
Sbjct: 626 AEAPMEDTSQPPPSE--PKGDAAREGETPDEKESGDKSEAQKPNEKGQAGPEGVPPAPEE 683
Query: 673 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-NWLEEDGWNAEA 731
+ +K+K + ++ + +L + + + +E V K++++T LE+ A
Sbjct: 684 E-KKQKPARK-QKMVEEIGVELAVLDLPDLPE-DELAHSVQKLEDLTLRDLEKQEREKAA 740
Query: 732 DVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETE 790
+ LE + E + L P ++ ++R E ++ L+ + T+ + T +
Sbjct: 741 NSLEAFIFETQDKLYQPEYQEVSTEEQREE----ISGKLSATSTWLED-EGFGATTVMLK 795
Query: 791 DLNLFSDIEL-KSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVE 839
D L +L + L + E + W E+ N L S + R I E
Sbjct: 796 D-KLAELRKLCQGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIPE 844
|
|
| MGI|MGI:108030 Hyou1 "hypoxia up-regulated 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 360/845 (42%), Positives = 499/845 (59%)
Query: 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRF 84
+AVMSVDLGSE MKVAIV PGVPMEI LNKES+RKTP V + ER G+ A + +
Sbjct: 33 LAVMSVDLGSESMKVAIVKPGVPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKN 92
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAM 144
P + YF LLGK D+P V L++SRFP ++++ D +R T+ F+ + + EE++ M
Sbjct: 93 PKATLRYFQHLLGKQADNPHVALYRSRFPEHELIVDPQRQTVRFQISPQLQFSPEEVLGM 152
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L+ +R A A Q I +AVI VP +FNQ ER+++L+A +AGLKVLQL+ND TA AL+
Sbjct: 153 VLNYSRSLAEDFAEQPIKDAVITVPAFFNQAERRAVLQAARMAGLKVLQLINDNTATALS 212
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264
YG+F+RKD N T +VMFYDMG+ ST +IV+YQ VKTKE G PQ+ + GVG+DR
Sbjct: 213 YGVFRRKDINSTAQ-NVMFYDMGSGSTVCTIVTYQTVKTKEAGM---QPQLQIRGVGFDR 268
Query: 265 TLGGLEMQIRLRDFLGKKFNEMKK--TTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
TLGGLEM++RLR+ L K FNE +K KDV ENPRA+AKL +EA RLK VLSAN +H A
Sbjct: 269 TLGGLEMELRLREHLAKLFNEQRKGQKAKDVRENPRAMAKLLREANRLKTVLSANADHMA 328
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
QIEGL+D++DFK VTR EFE L DLFDRV PV+QAL+S+ + +D I QVILVG TR
Sbjct: 329 QIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATR 388
Query: 383 VPKVQEKITKVVGVE-LSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
VPKVQE + K VG E L KN+N DEAAA+GAVY+AA LS FKVK F+ +D V+YPI VE
Sbjct: 389 VPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVIYPILVE 448
Query: 442 FERE--SESG--DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
F RE E G K KR+LF YPQ+K++TFN+Y DFNF+++Y ++ L PE
Sbjct: 449 FTREVEEEPGLRSLKHNKRVLFSRMGPYPQRKVITFNRYSHDFNFHINYG-DLGFLGPED 507
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELV----VE 553
+ + G++ ++ + GV E+F K+ + ESKGIKAHF +DESG+LSL +E V VE
Sbjct: 508 LRVFGSQNLTTVKLKGVGESFKKYPDY--ESKGIKAHFNLDESGVLSLDRVESVFETLVE 565
Query: 554 KQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTXXXXXXX 613
ES L+KLGNT++SLF + + ++ +AV E ++ E SK+ +
Sbjct: 566 DSPEEESTLTKLGNTISSLFGGGTSSDAKENGTDAVQEEEESPAEGSKDEPAEQGELKEE 625
Query: 614 XXXVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI--EH 671
T P + PK +E E G +K EK + + E
Sbjct: 626 AEPPAEETSQPPPSE-PKGDAAREGEKPDEKESGDKPEAQKPNEKGQAGPEGAAPAPEED 684
Query: 672 AKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEIT-NWLEEDGWNAE 730
K + + +E + + + L+L + +E V K++E+T LE+
Sbjct: 685 KKPKPARKQKMVEEIGVEL-AVLDLPDLPE----DELARSVQKLEELTLRDLEKQEREKA 739
Query: 731 ADVLENKLNEI-NSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNET 789
A+ LE + E + L P ++ ++R E ++ L+ + T+ + T
Sbjct: 740 ANSLEAFIFETQDKLYQPEYQEVSTEEQREE----ISGKLSATSTWLED-EGFGATTVML 794
Query: 790 EDLNLFSDIEL-KSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRAL-ERE 847
+D L +L + L + E + W E+ N L S + R I E + E E
Sbjct: 795 KD-KLAELRKLCQGLFFRVEERRKWPERLSALDNLLNHSSIFLKGARLIPEMDQVFTEVE 853
Query: 848 VRYLE 852
+ LE
Sbjct: 854 MTTLE 858
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7ZUW2 | HYOU1_DANRE | No assigned EC number | 0.4401 | 0.9504 | 0.9010 | yes | N/A |
| Q60432 | HYOU1_CRIGR | No assigned EC number | 0.4132 | 0.9461 | 0.8798 | yes | N/A |
| Q06068 | HSP97_STRPU | No assigned EC number | 0.2596 | 0.8331 | 0.8706 | yes | N/A |
| Q5ZLK7 | HYOU1_CHICK | No assigned EC number | 0.4276 | 0.9418 | 0.8732 | yes | N/A |
| Q9Y4L1 | HYOU1_HUMAN | No assigned EC number | 0.4195 | 0.9440 | 0.8778 | yes | N/A |
| Q9JKR6 | HYOU1_MOUSE | No assigned EC number | 0.4214 | 0.9461 | 0.8798 | yes | N/A |
| F4JMJ1 | HSP7R_ARATH | No assigned EC number | 0.3615 | 0.7567 | 0.8108 | yes | N/A |
| Q63617 | HYOU1_RAT | No assigned EC number | 0.4291 | 0.9117 | 0.8478 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 929 | |||
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 1e-112 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-99 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 7e-83 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 3e-73 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 4e-70 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 4e-61 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 3e-59 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-58 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 5e-57 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 3e-51 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 5e-51 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 9e-50 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-47 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 3e-46 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 6e-45 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 4e-43 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 2e-42 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 5e-42 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 6e-41 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 9e-41 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 4e-40 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 5e-39 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-38 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 4e-38 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-35 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 3e-35 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 4e-35 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-34 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 1e-33 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-17 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-05 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 9e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 9e-04 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 530 bits (1367), Expect = 0.0
Identities = 211/392 (53%), Positives = 269/392 (68%), Gaps = 6/392 (1%)
Query: 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 87
+ +DLGSEW+KVA+V PGVP EI LN+ESKRKTP+ VAF GER FG DA + RFP
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 88 SYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLH 147
Y + DLLGK D P V L++SR P +V DE RGT+ FK +D E Y VEELVAM+L+
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILN 120
Query: 148 KAREYASVSAGQ-VINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
A++ A A + + + VI VP YF Q +RQ++L A ELAGL VL L+ND TA ALNY
Sbjct: 121 YAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYA 180
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ +R F P +V+FYDMGA STT ++V + V+ KE+ +T PQ+ VLGVG+DRTL
Sbjct: 181 LDRR--FENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKS--KTVPQIEVLGVGWDRTL 236
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326
GG E +RL D L K+F E K DV NPRA+AKL KEA R K VLSAN+E IE
Sbjct: 237 GGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIES 296
Query: 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 386
L D+IDFK +TRAEFE L DLF+R P+++AL+S+ + + I V L+G TRVPKV
Sbjct: 297 LYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKV 356
Query: 387 QEKITKVVG-VELSKNLNTDEAAALGAVYKAA 417
QE++++ VG +L K+LN DEAAA+GA Y AA
Sbjct: 357 QEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 349 bits (896), Expect = e-112
Identities = 109/392 (27%), Positives = 188/392 (47%), Gaps = 17/392 (4%)
Query: 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSN 87
+DLG+ +A+ ++I +N+ S R TP++V F R GE + T N
Sbjct: 1 FGLDLGNNNSVLAVARN-RGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKN 59
Query: 88 SYGYFLDLLGKSIDSPVVQLF-KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
+ ++G P + K + D++ G V + ++ +L AM +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 207 IFKRKD-FNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
IFK E P V F D+G S T SIV+++ Q+ VLG D+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKK------------GQLKVLGTACDKH 227
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 228 FGGRDFDLAITEHFADEFKTKYKI--DIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 386 VQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417
+++ I++ G LS LN DEA A GA + A
Sbjct: 346 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 377
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 316 bits (813), Expect = 1e-99
Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 20/398 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +D G+ VA+ G +++ N+ S R+TP+LV+F + +R GE A+
Sbjct: 1 SVVGIDFGNLNSVVAVARKGG-IDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNF 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFK-TNDNE--LYHVEELV 142
N+ F L+G+ D P VQ P+ +V + G + K E ++ E+++
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPF-KVVELPD-GKVGIKVNYLGEEKVFSPEQVL 117
Query: 143 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVA 202
AMLL K +E A + + + VI VP YF +R+++L A ++AGL L+LMN+ TA A
Sbjct: 118 AMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATA 177
Query: 203 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
L YGI+K E P +V F D+G ST VSIV++ K ++ VL +
Sbjct: 178 LAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAF----NKG--------KLKVLSTAF 225
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
DR LGG + L + K+F +K DV NP+A +L +LK VLSAN E
Sbjct: 226 DRNLGGRDFDEALFEHFAKEFK--EKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPL 283
Query: 323 QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTR 382
IE L+++ D + R EFE L L +RV P+E+AL + + + I V +VG TR
Sbjct: 284 NIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTR 343
Query: 383 VPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+P V+E I KV G ELS LN DEA A G + A LS
Sbjct: 344 IPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 7e-83
Identities = 193/655 (29%), Positives = 291/655 (44%), Gaps = 79/655 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ +DLG+ VA++ G P E+ N E R TP++VAF ER G+ A+ P
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGP-EVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPK 59
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N+ L+G+ PVVQ PY +V V E + E++ AM+L
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPY-KVVKLPNGDAGVEVRYLGETFTPEQISAMVL 118
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G+ + +AVI VP YFN +RQ+ AG +AGL VL+++N+ TA AL YG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ K KD V+ +D+G + VSI+ G E VL D L
Sbjct: 179 LDK-KDKERN----VLVFDLGGGTFDVSILEI------GDGVFE------VLATNGDTHL 221
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-EHFAQIE 325
GG + RL D ++F KK D+ ++PRA+ +L + A + K LS+N E
Sbjct: 222 GGEDFDNRLVDHFVEEFK--KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFI 279
Query: 326 GLIDE-IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384
+ + D +TRA+FE L DLF+R PVE+ALK + + I +V+LVG TR+P
Sbjct: 280 TAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIP 339
Query: 385 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFER 444
VQE + + G E SK +N DEA A+GA +A LS F VK + D+ + +E
Sbjct: 340 AVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIET-- 397
Query: 445 ESESGD--TKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPEQIA 499
G TK+I R T P KK F+ V E E
Sbjct: 398 ---LGGVMTKLIPRN-----TTIPTKKSQIFSTAADNQTAVEIQVYQG-EREMAPD---- 444
Query: 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQE 556
K + F++ G+ A +G I+ F +D +GIL++ + K++
Sbjct: 445 ---NKLLGSFELDGIPPA----------PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQ 491
Query: 557 AAESPLSKLGNTLTSLFSRSKTDENEKPINEA--VDEGNKTAEEPSKNVNSTESQQQSAE 614
S L+ DE E+ + +A +K +E + N E S E
Sbjct: 492 KITITASS---GLSD-------DEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLE 541
Query: 615 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI 669
+S+K K K+ E + L + E+ +K + L ++
Sbjct: 542 KSLKEEGDKLPEADKKKVEEAIEWLKEE--------LEGEDKEEIEAKTEELQKV 588
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 3e-73
Identities = 170/607 (28%), Positives = 271/607 (44%), Gaps = 85/607 (14%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 88
+DLG+ VA++ G ++ N E +R TP++VAF K GE G+ A+ P N+
Sbjct: 10 IDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENT 69
Query: 89 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 148
+G+ + + + D + Y EE+ AM+L K
Sbjct: 70 IFSIKRKIGRGSNGLKISV----------------------EVDGKKYTPEEISAMILTK 107
Query: 149 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 208
+E A G+ + +AVI VP YFN +RQ+ A +AGL VL+L+N+ TA AL YG+
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 268
K K+ V+ YD+G + VS++ G E VL G D LGG
Sbjct: 168 KGKE------KTVLVYDLGGGTFDVSLLEI------GDGVFE------VLATGGDNHLGG 209
Query: 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 328
+ L D+L +F K D+ + A+ +L + A + K LS+ + + +
Sbjct: 210 DDFDNALIDYLVMEFK--GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIG 267
Query: 329 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 388
+ID +TRA+FE L DL +R PVEQALK + + I VILVG TR+P VQE
Sbjct: 268 GDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQE 327
Query: 389 KITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESES 448
+ + G E K++N DEA ALGA +AA LS + D++ + +E
Sbjct: 328 LVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLL--DVIPLSLGIETLGGVR- 384
Query: 449 GDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTKQISK 508
T II+R + T P KK F+ + A I E+ K + +
Sbjct: 385 --TPIIER-----NTTIPVKKSQEFSTAA-----DGQTAVAIHVFQGEREMAADNKSLGR 432
Query: 509 FDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNT 568
F++ G+ A + I+ F +D +GIL++ +L K+++ T
Sbjct: 433 FELDGIPPA------PRGVPQ-IEVTFDIDANGILNVTAKDLGTGKEQS---------IT 476
Query: 569 LTSLFSRSKTDENEKPINEAVDEGNKTAE------EPSKNVNSTESQQQSAEESVKNATQ 622
+ + S ++ I V++ A E + N ES S E+++K +
Sbjct: 477 IKASSGLS-----DEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVK 531
Query: 623 TPDADKK 629
+ +K+
Sbjct: 532 VSEEEKE 538
|
Length = 579 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 4e-70
Identities = 126/380 (33%), Positives = 192/380 (50%), Gaps = 23/380 (6%)
Query: 39 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLG 97
VA V G EI N E R TP++V F GE GE A+ P N+ G F L+G
Sbjct: 12 VAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIG 71
Query: 98 KSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSA 157
+ D P+VQ K V + Y EE+ A++L K +E A
Sbjct: 72 RKFDDPLVQSAKKVIGVDRGAPIIP----VPVELGGKKYSPEEVSALILKKLKEDAEAYL 127
Query: 158 GQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 217
G+ + EAVI VP YFN +R++ +A E+AGL V++L+N+ TA AL YG+ K+ + T
Sbjct: 128 GEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKKDEKGRT- 186
Query: 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRD 277
++ +D+G + VS+V + VL G D LGG + L D
Sbjct: 187 ---ILVFDLGGGTFDVSLVEVE------------GGVFEVLATGGDNHLGGDDFDNALAD 231
Query: 278 FLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLV 337
+L +KF +K D+ +PRA+ +L + A + K LS++ E + GL D ++ +
Sbjct: 232 YLAEKF--KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVEL 289
Query: 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 397
TR EFE L L +R VE+ L + + + I V+LVG +R+P V+E + ++ G +
Sbjct: 290 TREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKK 349
Query: 398 LSKNLNTDEAAALGAVYKAA 417
++++ DEA ALGA AA
Sbjct: 350 PLRSIDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 4e-61
Identities = 133/393 (33%), Positives = 207/393 (52%), Gaps = 23/393 (5%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ +DLG+ + V + G +EI N + R TP+ VAF GER G+ A+ T P
Sbjct: 3 VIGIDLGTTYSCVGVFKNG-RVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAML 145
N+ L+G+ D VQ PY +V + + I + + EE+ AM+
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPY-KVVNKDGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL V++++N+ TA A+ Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K+ E N ++ +D+G + VS++ T + G E VL D
Sbjct: 181 GLDKKGG--EKN---ILVFDLGGGTFDVSLL------TIDNGVFE------VLATNGDTH 223
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
LGG + R+ + K F KK KD+ ++ RA+ KL +E + K LS+ ++ +IE
Sbjct: 224 LGGEDFDQRVMEHFIKLFK--KKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE 281
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
L D DF +TRA+FE LN DLF + PV++ L+ + + I +++LVG TR+PK
Sbjct: 282 SLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPK 341
Query: 386 VQEKITKVV-GVELSKNLNTDEAAALGAVYKAA 417
VQ+ + + G E S+ +N DEA A GA +A
Sbjct: 342 VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 3e-59
Identities = 129/399 (32%), Positives = 205/399 (51%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ D+G + +A+ G +E N+ S R TP++++F RT G A+
Sbjct: 1 SVVGFDVGFQSCYIAVARAG-GIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHA 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 143
+N+ F G++ + P VQ K Y D+V + G V + L+ VE++ A
Sbjct: 60 NNTVSNFKRFHGRAFNDPFVQKEKENLSY-DLVPLKNGGVGVKVMYMGEEHLFSVEQITA 118
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
MLL K +E A + + + + VI VP +F ER+S+L A ++ GL L+LMND TAVAL
Sbjct: 119 MLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVAL 178
Query: 204 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
NYGI+K+ + P V+F DMG + VS ++ K K VLG +
Sbjct: 179 NYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLK------------VLGTAF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D LGG +L + +F K D RA+ +L++E +LK ++S+N+
Sbjct: 227 DPFLGGKNFDEKLVEHFCAEFK--TKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE +++ D + R++FE L DL R+ P+ L+ + + ++ +S V +VG T
Sbjct: 285 LNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+E+I K G ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 1e-58
Identities = 132/392 (33%), Positives = 204/392 (52%), Gaps = 20/392 (5%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ + V + G +EI N + R TP+ VAF ER G+ A+ P+N+
Sbjct: 4 IDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTV 62
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 149
L+G+ PVVQ +P+ + + IV + + ++ EE+ +M+L K
Sbjct: 63 FDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLTKM 122
Query: 150 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 209
+E A G+ + AVI VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG+ K
Sbjct: 123 KEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDK 182
Query: 210 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 269
+ +V+ +D+G + VS++ T E G E V D LGG
Sbjct: 183 KGG----GERNVLIFDLGGGTFDVSLL------TIEDGIFE------VKATAGDTHLGGE 226
Query: 270 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 329
+ RL + ++F +K KD+ N RA+ +L R K LS++ + +I+ L +
Sbjct: 227 DFDNRLVNHFVQEFK--RKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFE 284
Query: 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 389
IDF +TRA FE L DLF PVE+ L+ + + I ++LVG TR+PKVQ+
Sbjct: 285 GIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKL 344
Query: 390 ITKVV-GVELSKNLNTDEAAALGAVYKAADLS 420
+ G EL+K++N DEA A GA +AA LS
Sbjct: 345 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 5e-57
Identities = 198/682 (29%), Positives = 325/682 (47%), Gaps = 81/682 (11%)
Query: 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 81
+ G A+ +DLG+ + V V +EI N + R TP+ VAF ER G+ A+
Sbjct: 2 TKGPAI-GIDLGTTYSCVG-VWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 82 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTI-VFKTNDNELYHVEE 140
R P N+ L+G+ D VVQ +P+ +++ I V + + +H EE
Sbjct: 60 ARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEE 119
Query: 141 LVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTA 200
+ +M+L K +E A G+ + +AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA
Sbjct: 120 ISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 179
Query: 201 VALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260
A+ YG+ K K E N V+ +D+G + VS++ T E G E V
Sbjct: 180 AAIAYGLDK-KGDGEKN---VLIFDLGGGTFDVSLL------TIEDGIFE------VKAT 223
Query: 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH 320
D LGG + RL +F + F K KD+ N RA+ +L + R K LS++ +
Sbjct: 224 AGDTHLGGEDFDNRLVEFCVQDFKR-KNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQA 282
Query: 321 FAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG 380
+I+ L + ID+ + ++RA FE L D F PVE+ LK + + + +V+LVG
Sbjct: 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGS 342
Query: 381 TRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 439
TR+PKVQ I G E K++N DEA A GA +AA L TG + + +D++L +
Sbjct: 343 TRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAIL-TGEQSSQ--VQDLLLLDVT 399
Query: 440 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
+ E+ G TK+I+R + T P KK F Y + + E E +
Sbjct: 400 PLSLGLETAGGVMTKLIER-----NTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKD 454
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 554
+LG KF + G+ A +G I+ F +D +GIL+ V
Sbjct: 455 NNLLG-----KFHLDGIPPA----------PRGVPQIEVTFDIDANGILN-------VSA 492
Query: 555 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAE 614
++ + +K+ T+T+ R + ++ +NEA E K +E ++ ++ ++
Sbjct: 493 EDKSTGKSNKI--TITNDKGRLSKADIDRMVNEA--EKYKAEDEANRERVEAKNGLENYC 548
Query: 615 ESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQI----- 669
S+KN Q VK +S S+ +T+ EK ++++L L+ NQ+
Sbjct: 549 YSMKNTLQDEK---------VKGKLSDSD----KATI-EKAIDEALEWLEK-NQLAEKEE 593
Query: 670 -EHAKVRKEKALNSLESLLFDA 690
EH + E N + + ++ A
Sbjct: 594 FEHKQKEVESVCNPIMTKMYQA 615
|
Length = 653 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 3e-51
Identities = 129/399 (32%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +DLG + VA+ G +E N+ S R TP ++F R+ G A+
Sbjct: 1 SVVGIDLGFQSCYVAVARAG-GIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNA 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVA--DEERGTIVFKTNDNELYHVEELVA 143
N+ F G++ P VQ K Y D+V G V + + E++ A
Sbjct: 60 KNTVQGFKRFHGRAFSDPFVQAEKPSLAY-DLVQLPTGSTGIKVMYMEEERNFTTEQVTA 118
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
MLL K +E A + + + + V+ VP ++ ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 119 MLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVAL 178
Query: 204 NYGIFKRK-DFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
YGI+K+ E P +V+F DMG + VS+ ++ K K VL +
Sbjct: 179 AYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLK------------VLATAF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D TLGG + L ++ ++F KK D+ RA+ +L +E +LK ++SAN
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFG--KKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE +++ID + R +F + +DL RV P+ L+ + + + I V +VG T
Sbjct: 285 LNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+EKI+K G E+S LN DEA A G + A LS
Sbjct: 345 RIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 184 bits (467), Expect = 5e-51
Identities = 125/399 (31%), Positives = 202/399 (50%), Gaps = 20/399 (5%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFP 85
+V+ +DLG +A+ G +E N+ S R TP ++ R G A+
Sbjct: 1 SVVGIDLGFLNCYIAVARSG-GIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNV 59
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPY-YDIVADEERGTIVFKTNDNELYHVEELVAM 144
N+ F L G+S D P+VQ + R PY + + G V + + +E++ M
Sbjct: 60 RNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGM 119
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
LL K +E + + + + + VI +P +F ER+S++ A ++AGL L+LMN+ TAVAL
Sbjct: 120 LLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALA 179
Query: 205 YGIFKRKDFN--ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262
YGI+K +D + P +V+F DMG + VS+ ++ K K VL +
Sbjct: 180 YGIYK-QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLK------------VLATTF 226
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFA 322
D LGG L D+ +F K +V EN RA+ +L++E +LK ++SAN
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKI--NVKENSRALLRLYQECEKLKKLMSANASDLP 284
Query: 323 -QIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
IE ++++D + RA+FE L L RV P++ ++ + + + I + +VG T
Sbjct: 285 LNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGAT 344
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
R+P V+E+IT ++S LN DEA A G + A LS
Sbjct: 345 RIPAVKEQITSFFLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 9e-50
Identities = 135/402 (33%), Positives = 209/402 (51%), Gaps = 38/402 (9%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VA++ G P I N E R TP++VAF K GER G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIP-NAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ +G+ D + + PY +V + + +N + Y +E+ A
Sbjct: 62 -PENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKD-YTPQEISA 116
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
M+L K +E A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL
Sbjct: 117 MILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 176
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K+ NE ++ YD+G + VSI+ G E VL D
Sbjct: 177 AYGLDKKG--NEK----ILVYDLGGGTFDVSILEI------GDGVFE------VLATNGD 218
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQ 323
LGG + R+ D+L ++F K+ D+ ++ A+ +L + A + K LS+ E
Sbjct: 219 THLGGDDFDQRIIDWLVEEF--KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEIN 276
Query: 324 IEGL-IDE-----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
+ + D ++ L TRA+FE L EDL +R PV+QALK + + I +VILV
Sbjct: 277 LPFITADATGPKHLEMTL--TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILV 334
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419
G TR+P VQE + ++ G E +K +N DE A+GA + L
Sbjct: 335 GGSTRIPAVQELVKELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 1e-47
Identities = 128/393 (32%), Positives = 204/393 (51%), Gaps = 23/393 (5%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
++ +DLG+ VA++ P+ I N E KR TP++V+F K GE A+ P
Sbjct: 4 IIGIDLGTTNSCVAVIDKTTPVIIE-NAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N++ L+G+ VQ K + PYY IV E R + + + Y ++ + +L
Sbjct: 63 NTFFATKRLIGRQFKDVEVQR-KMKVPYYKIV--EGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ A G+ ++EAVI VP YFN +RQ+ AG LAGLKVL+++N+ TA AL YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
I KRK ++ YD+G + +SI++ E G E V D L
Sbjct: 180 IDKRK-----ENKNIAVYDLGGGTFDISILNI------EDGVFE------VKATNGDTML 222
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326
GG + + ++ K+F K D+ N +A+ ++ + A + K LS++ E ++
Sbjct: 223 GGEDFDNAIVQYIIKEFKR--KYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPY 280
Query: 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKV 386
L ++ +TR EFE L + + R YP +Q LK + + I +VILVG TR+P +
Sbjct: 281 LDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYI 340
Query: 387 QEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419
Q + ++ G + SK++N DEA ALGA + + L
Sbjct: 341 QNVVQEIFGKKPSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 3e-46
Identities = 189/641 (29%), Positives = 298/641 (46%), Gaps = 121/641 (18%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VA++ G P+ I N E R TP++VAF K GER G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIP-NAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ +G+ D V R PY +V D G + K + E Y +E+ AM+
Sbjct: 61 ENTIYSIKRFMGRRFD--EVTEEAKRVPY-KVVGDG--GDVRVKVDGKE-YTPQEISAMI 114
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA AL Y
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K K +E ++ +D+G + VSI+ G E VL D
Sbjct: 175 GLDKSKK-DEK----ILVFDLGGGTFDVSILEIG------DGVFE------VLSTAGDTH 217
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+
Sbjct: 218 LGGDDFDQRIIDWLADEFK--KEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS------ 269
Query: 326 GLIDEID-------------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 372
EI+ ++ +TRA+FE L DL +R PV QALK + + I
Sbjct: 270 ---TEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDID 326
Query: 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 432
+VILVG TR+P VQE + G E +K++N DE A+GA + V K KD
Sbjct: 327 EVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGG-------VLKGDVKD 379
Query: 433 IVLY---PIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYAS 488
++L P+ + E+ G TK+I+R + T P KK F S A+
Sbjct: 380 VLLLDVTPLSLGI--ETLGGVMTKLIER-----NTTIPTKKSQVF-----------STAA 421
Query: 489 ------EIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDE 539
+I L E+ K + +F+++G+ A +G I+ F +D
Sbjct: 422 DNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA----------PRGVPQIEVTFDIDA 471
Query: 540 SGILSLVNIELVVEKQEA----AESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKT 595
+GIL + + K+++ A S LS+ +E E+ + EA E N
Sbjct: 472 NGILHVSAKDKGTGKEQSITITASSGLSE--------------EEIERMVKEA--EANAE 515
Query: 596 AEEPSKNV----NSTESQQQSAEESVKNATQTPDADKKPKI 632
++ K N+ +S AE+++K A A++K KI
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKI 556
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 6e-45
Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 20/371 (5%)
Query: 49 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQLF 108
++ N R TP +VAF E G A+ R +N+ +LG+S P Q
Sbjct: 23 DVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKE 82
Query: 109 KSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIV 168
K+ I D E +F + +E+ ++ K +E A + G + VI V
Sbjct: 83 KTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITV 142
Query: 169 PGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGA 228
P YF++ ++ ++ +A E AG VL+++++ +A AL YGI + + T +V+ Y +G
Sbjct: 143 PVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGIGQD---SPTGKSYVLVYRLGG 199
Query: 229 WSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKK 288
ST V+I+ G VL D LGG L +L NE K+
Sbjct: 200 TSTDVTILRVN------SGMYR------VLATSTDDNLGGESFTETLSQYLA---NEFKR 244
Query: 289 TTK-DVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNE 347
K DV N RA+ KL A K +LS +E L + IDF+ V+RA FE+L
Sbjct: 245 KWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARFESLCS 304
Query: 348 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITK-VVGVELSKNLNTDE 406
LF + P+E+ L+ + + I++V+L G +R+PK+Q+ I VE+ +++ DE
Sbjct: 305 SLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDE 364
Query: 407 AAALGAVYKAA 417
A+GA +A
Sbjct: 365 VIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-43
Identities = 125/383 (32%), Positives = 183/383 (47%), Gaps = 37/383 (9%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ VA V G ++I ++ + P++V + G + G DA + P N+
Sbjct: 5 IDLGTTNSLVASVLSG-KVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKNTI 63
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKA 149
L+GKSI+ K FPY I+ + G I+F T + VE + A +L
Sbjct: 64 SSVKRLMGKSIEDI-----KKSFPYLPILEGKNGGIILFHTQQGTVTPVE-VSAEILKAL 117
Query: 150 REYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK 209
+E A S G I AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA AL YG+ K
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 210 RKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGL 269
+K+ YD+G + VSI+ +G E VL G D LGG
Sbjct: 178 KKE------GIYAVYDLGGGTFDVSILKL------HKGVFE------VLATGGDSALGGD 219
Query: 270 EMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID 329
+ L + L +KK + A+L A + K LS E +E +
Sbjct: 220 DFDQLLAELL------LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE----VE--VR 267
Query: 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEK 389
DFK +TR EFE L + L + +QAL+ + + + I VILVG TR+P VQE
Sbjct: 268 GQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEA 327
Query: 390 ITKVVGVELSKNLNTDEAAALGA 412
++K G + ++N DE A+GA
Sbjct: 328 VSKFFGQKPLCDINPDEVVAIGA 350
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 2e-42
Identities = 132/402 (32%), Positives = 196/402 (48%), Gaps = 49/402 (12%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRF 84
AV+ +DLG+ VA++ P I N E R TP++VAF K GER G A+
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIE-NAEGARTTPSVVAFTKDGERLVGMPAKRQAVTN 61
Query: 85 PSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD------EERGTIVFKTNDNELYHV 138
P N+ L+G+ D P VQ PY + A E G + Y
Sbjct: 62 PENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHG---------KKYSP 112
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
++ A +L K +E A G+ + AVI VP YFN +RQ+ AG++AGL VL+++N+
Sbjct: 113 SQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEP 172
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA AL YG ++ + + YD+G + +SI+ Q +G E V
Sbjct: 173 TAAALAYG------LDKKDDKVIAVYDLGGGTFDISILEIQ------KGVFE------VK 214
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
D LGG + L L K+F K+ D+ ++ A+ +L + A + K LS++
Sbjct: 215 STNGDTFLGGEDFDNALLRHLVKEFK--KEQGIDLTKDNMALQRLREAAEKAKIELSSS- 271
Query: 319 EHFAQIEGLIDEID--------FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 370
Q + + I + +TRA+FE+L DL R P ++ALK + V
Sbjct: 272 ---LQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSD 328
Query: 371 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
I +VILVG TR+PKVQE + ++ G E SK +N DEA A+GA
Sbjct: 329 IGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDEAVAIGA 370
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 5e-42
Identities = 115/388 (29%), Positives = 181/388 (46%), Gaps = 34/388 (8%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNS 88
+DLG+ VA V GVP E+ + E + P++V + K G G++A P N+
Sbjct: 4 IDLGTTNSLVASVRSGVP-EVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNT 62
Query: 89 YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHK 148
L+G+SI+ S PY V D + +T + VE + A +L K
Sbjct: 63 ISSVKRLMGRSIEDIKTF---SILPY-RFV-DGPGEMVRLRTVQGTVTPVE-VSAEILKK 116
Query: 149 AREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIF 208
++ A S G + AVI VP YF+ +RQ+ A LAGL VL+L+N+ TA A+ YG+
Sbjct: 117 LKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLD 176
Query: 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGG 268
K + YD+G + VSI+ +G E VL G D LGG
Sbjct: 177 KASE------GIYAVYDLGGGTFDVSILKL------TKGVFE------VLATGGDSALGG 218
Query: 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLI 328
+ L ++ +K+ NP L + A K L+ +++ +
Sbjct: 219 DDFDHALAKWI------LKQLGISADLNPEDQRLLLQAARAAKEALTDAES--VEVDFTL 270
Query: 329 DEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQE 388
D DFK +TR EFEAL + L + +AL+ + + ++ I V+LVG TR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 389 KITKVVGVELSKNLNTDEAAALGAVYKA 416
+ ++ G E +++ D+ ALGA +A
Sbjct: 331 AVAELFGQEPLTDIDPDQVVALGAAIQA 358
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 6e-41
Identities = 186/641 (29%), Positives = 297/641 (46%), Gaps = 89/641 (13%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA + G P I N E +R TP++VA+ K G+R G+ A+ P
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPT-IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N++ +G+ + V + +S+ Y +V DE + + + EE+ A +
Sbjct: 100 ENTFFSVKRFIGRKMSE-VDE--ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 156
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K + AS + +AVI VP YFN +R + AG +AGL+VL+++N+ TA +L Y
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G F++K NET ++ +D+G + VS++ G E VL D
Sbjct: 217 G-FEKKS-NET----ILVFDLGGGTFDVSVLEVG------DGVFE------VLSTSGDTH 258
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA---NNEHFA 322
LGG + R+ D+L F K D+ ++ +A+ +L + A + K LS+ +
Sbjct: 259 LGGDDFDKRIVDWLASNFK--KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLP 316
Query: 323 QIEGLID---EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA 379
I D ID L TRA+FE L DL DR PVE AL+ + + I +VILVG
Sbjct: 317 FITATADGPKHIDTTL--TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGG 374
Query: 380 GTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQ 439
TR+P VQE + K+ G + + +N DE ALGA +A L+ DIVL +
Sbjct: 375 STRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE-------VSDIVLLDVT 427
Query: 440 -VEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQ 497
+ E+ G TKII R + T P K F+ D +V EI L E+
Sbjct: 428 PLSLGLETLGGVMTKIIPR-----NTTLPTSKSEVFST-AADGQTSV----EINVLQGER 477
Query: 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEK 554
+ K + F + G+ A +G I+ F +D +GILS+ + K
Sbjct: 478 EFVRDNKSLGSFRLDGIPPA----------PRGVPQIEVKFDIDANGILSVSATDKGTGK 527
Query: 555 QEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQS-- 612
++ T+T + K DE E+ + EA K A+E + ++ +++ Q+
Sbjct: 528 KQDI---------TITGASTLPK-DEVERMVQEA----EKFAKEDKEKRDAVDTKNQADS 573
Query: 613 ----AEESVKNATQTPDADKKPKI----VTVKEPISASETR 645
E+ +K AD K K+ +K+ I++ T+
Sbjct: 574 VVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQ 614
|
Length = 673 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 9e-41
Identities = 126/404 (31%), Positives = 205/404 (50%), Gaps = 39/404 (9%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VA++ G P+ IA N E R TP++V F K GE G+ A+ P
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIA-NAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKT-NDNELYHVEELVAM 144
N++ +G+ D + R PY I +E +G + K + EEL AM
Sbjct: 63 QNTFYNLKRFIGRRYDE--LDPESKRVPY-TIRRNE-QGNVRIKCPRLEREFAPEELSAM 118
Query: 145 LLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204
+L K + AS G+ + AVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 205 YGIFKRKDFNETNPVHVMFYDMGAWSTTVSI--VSYQVVKTKERGFVETHPQVSVLGVGY 262
YG + ++ V+ +D+G + VS+ V V + K + G
Sbjct: 179 YG------LDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK-----------ATSG--- 218
Query: 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA------ 316
D LGG + R+ D+L ++F E + D+ + +A+ +L + A + K LS
Sbjct: 219 DTQLGGNDFDKRIVDWLAEQFLEKEGI--DLRRDRQALQRLTEAAEKAKIELSGVSVTDI 276
Query: 317 NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 376
+ E I+ +L R +FE+L DL DR+ PV++ALK + + + I +V+L
Sbjct: 277 SLPFITATEDGPKHIETRL--DRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVL 334
Query: 377 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
VG TR+P VQ+ + ++ E ++N+N DE A+GA +A L+
Sbjct: 335 VGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILA 378
|
Length = 668 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 4e-40
Identities = 131/402 (32%), Positives = 196/402 (48%), Gaps = 77/402 (19%)
Query: 39 VAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQ----------------IIG 81
VA++ G P I N E R TP++VAF K GER G+ A+ ++G
Sbjct: 16 VAVMEGGEPKVIE-NAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMG 74
Query: 82 TRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEEL 141
R VQ PY + AD G + + + Y +E+
Sbjct: 75 RRDE------------------EVQKDIKLVPYKIVKADN--GDAWVEIDGKK-YTPQEI 113
Query: 142 VAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAV 201
AM+L K ++ A G+ + EAVI VP YFN +RQ+ AG++AGL+VL+++N+ TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 202 ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKE--RGFVETHPQVSVLG 259
AL YG+ K+ D E ++ YD+G + VSI+ E G E VL
Sbjct: 174 ALAYGLDKKGD--EK----ILVYDLGGGTFDVSIL--------EIGDGVFE------VLS 213
Query: 260 VGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE 319
D LGG + R+ D+L +F K+ D+ ++ A+ +L + A + K LS+ +
Sbjct: 214 TNGDTHLGGDDFDQRIIDYLADEFK--KENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ 271
Query: 320 HFAQI---------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDV 370
+I G ++ KL TRA+FE L EDL +R P +QALK + + +
Sbjct: 272 --TEINLPFITADASGPKH-LEIKL--TRAKFEELTEDLVERTIEPCKQALKDAGLSVSD 326
Query: 371 ISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
I +VILVG TR+P VQE + + G E +K +N DE A+GA
Sbjct: 327 IDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGA 368
|
Length = 627 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 5e-39
Identities = 112/407 (27%), Positives = 183/407 (44%), Gaps = 36/407 (8%)
Query: 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTR 83
V+ ++ G+ + +A ++ G IA N++ +R+ P+ +++H + G A Q+I R
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIA-NEDGERQIPSAISYHGEQEYHGNQAKAQLI--R 57
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVAD-----EERGTIVFKTNDNELYHV 138
N+ F DLLGK V + P V D +E+ V K + V
Sbjct: 58 NAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE---TILTV 114
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
E+ L + +E A G+ + AV+ VP +F+ + ++++KA E AGL VLQL+ +
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
A L Y + + + V+ D G T VS+++ RG + T +L
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVA-DFGGTRTDVSVIA-------VRGGLYT-----IL 221
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
+D LGG + L K+F KKT D N RA+AKL E+ K LSA+
Sbjct: 222 ATAHDPGLGGDTLDDALVKHFAKEFT--KKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
+E L + IDF + R FE L +F + V A+ + + I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 379 AGTRVPKVQEKI-------TKVVG-VELSKNLNTDEAAALGAVYKAA 417
PK+ + T + + +SK L+ E A G +A+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 1e-38
Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 26/280 (9%)
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
EEL +++L +E A G+ + EAVI VP YFN +R++ +AGELAGLKV +L+N+
Sbjct: 85 EELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEP 144
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA AL YG KD V +D+G + VS++ G +E +
Sbjct: 145 TAAALAYG-LHDKDEETKFLV----FDLGGGTFDVSVLELF------DGVMEVR---ASA 190
Query: 259 GVGYDRTLGGLEM-QIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
G D LGG + + FL K + + D P +A+L + A R K LS
Sbjct: 191 G---DNYLGGEDFTRALAEAFLKK--HGLDFEKLD----PSELARLLRAAERAKRALSDQ 241
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
E A++ I+ + + +TR EFE + + L +R+ P+E+AL+ + + I ++ILV
Sbjct: 242 EE--AEMSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILV 299
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417
G TR+P V++ ++++ G +LN DE ALGA +A
Sbjct: 300 GGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 4e-38
Identities = 184/658 (27%), Positives = 304/658 (46%), Gaps = 96/658 (14%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA++ G P I N E R TP++VA+ K G+ G+ A+ P
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIP-NAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N++ +G+ + + +++ Y + D + N+ + EE+ A +
Sbjct: 63 ENTFYSVKRFIGRKFSE-ISE--EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K E AS G+ + +AVI VP YFN +RQ+ AG++AGL+VL+++N+ TA +L Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K+ NET ++ +D+G + VSI+ G E VL D
Sbjct: 180 GLDKKN--NET----ILVFDLGGGTFDVSILEVG------DGVFE------VLSTSGDTH 221
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLS---------- 315
LGG + ++ ++L K+F KK D+ ++ +A+ +L + A + K LS
Sbjct: 222 LGGDDFDKKIVNWLIKEFK--KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLP 279
Query: 316 ---ANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVIS 372
A IE + TRA+FE L DL +R PVE ALK + + I
Sbjct: 280 FITATQTGPKHIEKTL---------TRAKFEELCSDLINRCRIPVENALKDAKLDKSDID 330
Query: 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKD 432
+V+LVG TR+P +QE + K++G + ++++N DE A+GA +A L+ +VK + D
Sbjct: 331 EVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAG--EVKDILLLD 388
Query: 433 IVLYPIQVEFERESESG-DTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIE 491
+ + V E+ G TKII R + T P KK F+ V D NV EI
Sbjct: 389 VTPLSLGV----ETLGGVMTKIIPR-----NTTIPTKKSEVFSTAV-DNQTNV----EIH 434
Query: 492 HLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNI 548
L E+ K + F + G+ A +G I+ F +D +GILS+
Sbjct: 435 VLQGERELAKDNKSLGTFRLDGIPPA----------PRGVPQIEVTFDIDANGILSVTAK 484
Query: 549 ELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV---NS 605
+ K+++ T+ + K DE E+ + EA ++ +E + + N
Sbjct: 485 DKGTGKEQSI---------TIQGASTLPK-DEVERMVKEA-EKNAAEDKEKREKIDLKNQ 533
Query: 606 TESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKL 663
ES AE+ +K +KK KI + + R + N + ++ L +L
Sbjct: 534 AESLCYQAEKQLKELKDKISEEKKEKIENL-----IKKLRQALQNDNYESIKSLLEEL 586
|
Length = 621 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (363), Expect = 1e-35
Identities = 157/613 (25%), Positives = 265/613 (43%), Gaps = 69/613 (11%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
V+ VDLG+ + VA + + N E R TP++VAF E+ G A+ P
Sbjct: 29 VIGVDLGTTYSCVATMDGDKA-RVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQ 87
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
+++ L+G+ + +Q PY + A G + + + Y ++ A +L
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGN--GDAWVQDGNGKQYSPSQIGAFVL 145
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G ++ AV+ P YFN +RQ+ AG +AGL V++++N+ TA AL YG
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 207 IFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTL 266
+ K KD + YD+G + +S++ G E V D L
Sbjct: 206 MDKTKD------SLIAVYDLGGGTFDISVLEIA------GGVFE------VKATNGDTHL 247
Query: 267 GGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAG-RLKNVLSANNEHFAQIE 325
GG + + L D++ E +KT+ R + +EA + K LS+ E +
Sbjct: 248 GGEDFDLALSDYI---LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLP 304
Query: 326 GLIDEID----FKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381
+ D ++ ++R++FE + + L +R P +Q +K + V + I+ V+LVG T
Sbjct: 305 FITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMT 364
Query: 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVE 441
R+PKV E++ K + + +N DEA ALGA L VK + D+ + +E
Sbjct: 365 RMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRG--DVKGLVLLDVTPLSLGIE 422
Query: 442 FERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAM 500
G + RM+ P NT P KK TF+ D V I+ E+
Sbjct: 423 -----TLGG--VFTRMI--PKNTTIPTKKSQTFST-AADNQTQVG----IKVFQGEREMA 468
Query: 501 LGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVVEKQEA 557
+ + +FD+ G+ A +G I+ F +D +GI + + K +
Sbjct: 469 ADNQMMGQFDLVGIPPA----------PRGVPQIEVTFDIDANGICHVTAKDKATGKTQ- 517
Query: 558 AESPLSKLGNTLTSLFSRSKTD-ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEES 616
T+T+ SK E +E E ++ E + N+ E+Q +AE
Sbjct: 518 --------NITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQ 569
Query: 617 VKNATQTPDADKK 629
+ DA+K+
Sbjct: 570 LGEWKYVSDAEKE 582
|
Length = 657 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 3e-35
Identities = 182/639 (28%), Positives = 292/639 (45%), Gaps = 89/639 (13%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VAI+ P I N E R TP++VAF + G+R G A+ P
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIE-NSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNP 101
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ L+G+ D + + PY + A I + Y ++ A +
Sbjct: 102 ENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWI---EAQGKKYSPSQIGAFV 158
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K +E A G+ + +AVI VP YFN +RQ+ AG++AGL VL+++N+ TA AL +
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K N+ + V YD+G + +SI+ G E V + +
Sbjct: 219 GMDK----NDGKTIAV--YDLGGGTFDISILEIL------GGVFE------VKATNGNTS 260
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 320
LGG + R+ ++L +F K+ D+ ++ A+ +L + A K LS+ N
Sbjct: 261 LGGEDFDQRILNYLIAEFK--KQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLP 318
Query: 321 F--AQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
F A G + KL +RA+ E L DL + P E+ +K + V D ++ VILVG
Sbjct: 319 FITADQSG-PKHLQIKL--SRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVG 375
Query: 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPI 438
TR+PKV E + K+ G E SK +N DEA A+GA +A V K KD++L +
Sbjct: 376 GMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAG-------VLKGEIKDLLLLDV 428
Query: 439 -QVEFERESESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 496
+ E+ G T++I R + T P KK F+ D V I+ E
Sbjct: 429 TPLSLGIETLGGVFTRLINR-----NTTIPTKKSQVFST-AADNQTQVG----IKVFQGE 478
Query: 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILSLVNIELVV- 552
+ K + +FD+ G+ A +G I+ F +D +GI+++ ++
Sbjct: 479 REMAADNKLLGQFDLVGIPPA----------PRGVPQIEVTFDVDANGIMNISAVDKSTG 528
Query: 553 EKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNV----NSTES 608
+KQE T+ S S +E EK + EA E K +E K + N E+
Sbjct: 529 KKQEI----------TIQSSGGLSD-EEIEKMVKEA--EEYKEQDEKKKELVDAKNEAET 575
Query: 609 QQQSAEESVKN-ATQTPDADK---KPKIVTVKEPISASE 643
S E+ + + + DADK K KI ++ +S+ +
Sbjct: 576 LIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSED 614
|
Length = 663 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-35
Identities = 107/394 (27%), Positives = 180/394 (45%), Gaps = 41/394 (10%)
Query: 21 HSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQII 80
H +AV +DLG+ VA V G E+ +++ + P++V + + G +A+
Sbjct: 16 HQRRLAV-GIDLGTTNSLVATVRSGQA-EVLPDEQGRVLLPSVVRYLEDGIEVGYEARAN 73
Query: 81 GTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPY--YDIVADEERGTIVFKTNDNELYHV 138
+ P N+ +G+S+ + R+P+ Y VA E G + +T V
Sbjct: 74 AAQDPKNTISSVKRFMGRSLADI-----QQRYPHLPYQFVASEN-GMPLIRTAQGLKSPV 127
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
E + A +L R+ A + G ++ AVI VP YF+ +RQ+ A LAGL VL+L+N+
Sbjct: 128 E-VSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEP 186
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258
TA A+ YG+ D + V + YD+G + +SI+ +G E VL
Sbjct: 187 TAAAIAYGL----D-SGQEGVIAV-YDLGGGTFDISILRL------SKGVFE------VL 228
Query: 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN 318
G D LGG + L D++ +++ +P L A K LS
Sbjct: 229 ATGGDSALGGDDFDHLLADWI------LEQAGLSPRLDPEDQRLLLDAARAAKEALSDA- 281
Query: 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378
+E + ++ +TR +F AL L R +AL+ + V D + +V++VG
Sbjct: 282 ---DSVE--VSVALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVG 336
Query: 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
TRVP V+E + + G +++ D+ A+GA
Sbjct: 337 GSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGA 370
|
Length = 616 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-34
Identities = 160/531 (30%), Positives = 256/531 (48%), Gaps = 67/531 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
V+ +DLG+ VA++ G P+ I N E R TP++V F K G+R G+ A+
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIP-NSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ +G+ D + +SR PY + ++ + + + Y +E+ AM+
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEE--RSRVPYTCVKGRDDTVNVQIRGRN---YTPQEISAMI 117
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + +AVI VP YF +RQ+ AG +AGL+VL+++N+ TA AL Y
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 206 GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
G+ K +D + ++ +D+G + VSI+ G E V +
Sbjct: 178 GLDK-QDQEQ----LILVFDLGGGTFDVSILQLG------DGVFE------VKATAGNNH 220
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEH 320
LGG + + D+L + F + + D+ ++ A+ +L + A + K LS+ N
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEG--IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLP 278
Query: 321 FAQIEGLIDEIDFKLL---VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
F DE K L +TRA+FE L +DL + P++QALK + + + I +VILV
Sbjct: 279 FITA----DETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILV 334
Query: 378 GAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 436
G TR+P VQE I K G + +++N DEA ALGA +A L G +VK + D+
Sbjct: 335 GGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL--GGEVKDLLLLDVT-- 390
Query: 437 PIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPE 496
P+ + E E TKII+R + T P K F+ D +V EI L E
Sbjct: 391 PLSLGIETLGEVF-TKIIER-----NTTIPTSKSQVFSTAT-DGQTSV----EIHVLQGE 439
Query: 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKG---IKAHFAMDESGILS 544
+ K + KF ++G+ A +G I+ F +D +GIL
Sbjct: 440 RAMAKDNKSLGKFLLTGIPPA----------PRGVPQIEVSFEIDVNGILK 480
|
Length = 653 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-33
Identities = 106/400 (26%), Positives = 191/400 (47%), Gaps = 33/400 (8%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKT-PTLVAFHKGERTFGEDAQIIGTRFP 85
++ +DLG+ + V + G + E+ RK+ P++VAF G G A P
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHV--EELVA 143
N+ +GK ++ R+ + + + G F NE V EE+ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF-KVKINSRNGAFFFSVLTNETKTVTPEEIGS 140
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
L+ K R+ A G + +AVI VP F++ +R + +KA LAGL+VL+++N+ TA AL
Sbjct: 141 RLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAAL 200
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K++D +V+ D+G + VS+++ K+ G ++ G +
Sbjct: 201 AYGLHKKQDV-----FNVLVVDLGGGTLDVSLLN------KQGGMF-----LTRAMAGNN 244
Query: 264 RTLGGLEMQIRLRDFL----GKKFNEMKKTTKDVFENPRAV--AKLFKEAGRLKNVLSAN 317
R LGG + RL +L +K+ ++ +D+ +AV AK+ L S
Sbjct: 245 R-LGGQDFNQRLLQYLYQKIYEKYGKVPDNKEDIQRLRQAVEAAKI-----NLTLHPSTT 298
Query: 318 NEHFAQIEGLIDEI-DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVIL 376
+ + I F+ +TR EFE LNEDLF ++ P+E L + + + +++L
Sbjct: 299 ISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVL 358
Query: 377 VGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416
VG TR+P++++ I + G + + +++ + A G +A
Sbjct: 359 VGGSTRIPRIRQVIGRFFGKDPNTSVDPELAVVTGVAIQA 398
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-17
Identities = 132/592 (22%), Positives = 234/592 (39%), Gaps = 107/592 (18%)
Query: 19 FEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ 78
F+ IAV +D G+ +AI + +++ + + K PT + F T G +
Sbjct: 14 FKQERQIAV-GIDFGTTNSLIAI-ATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNKG 71
Query: 79 IIGTRFPSNSYGYFLDLLGKS----IDSPVV-QLFKSRFPYYDIVADEERGTIVFKTNDN 133
+ + L GK+ +++P + L K Y D+ + E + K
Sbjct: 72 LRSIK----------RLFGKTLKEILNTPALFSLVKD---YLDVNSSELKLNFANKQ--- 115
Query: 134 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQ 193
+ E+ A + + A I +AVI VP +FN R ++ A ++AG +VL+
Sbjct: 116 --LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLR 173
Query: 194 LMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253
L+ + TA A YG+ K N+ V YD+G + VSI + +E F
Sbjct: 174 LIAEPTAAAYAYGLNK----NQKGCYLV--YDLGGGTFDVSI-----LNIQEGIF----- 217
Query: 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKF--NEMKKTTKDVFENPRAVAKLFKEAGRLK 311
V+ D LGG ++ + + +L KF T + +AK KE L
Sbjct: 218 --QVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQ--------LAKKAKET--LT 265
Query: 312 NVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVI 371
S NN+ + + + E L L +R ++ L+ + P I
Sbjct: 266 YKDSFNND--------------NISINKQTLEQLILPLVERTINIAQECLEQAGNPN--I 309
Query: 372 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITK 431
VILVG TR+P +++++ K V++ +++ D+A GA +A +L I
Sbjct: 310 DGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLI-- 367
Query: 432 DIVLYPIQVEFERESESGDTKIIKRMLFGPSNT-YPQKKILTFNKYVGD---FNFNVSYA 487
D+V + +E G + I NT P + F Y + F++
Sbjct: 368 DVVPLSLGMEL----YGGIVEKII-----MRNTPIPISVVKEFTTYADNQTGIQFHI--- 415
Query: 488 SEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSL-- 545
L E+ + +++F++ G+ A S + FA+D GILS+
Sbjct: 416 -----LQGEREMAADCRSLARFELKGLPPM-------KAGSIRAEVTFAIDADGILSVSA 463
Query: 546 ----VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGN 593
N +E + +++ L + + +K D + + EAV E
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAE 515
|
Length = 595 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 303 LFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALK 362
L + K LS+ +E +I+ E+ + VTRAEFE +R+ V++AL
Sbjct: 303 LARAVEAAKIALSSQDET--RIDLDFVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALA 360
Query: 363 SSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395
+ V D I +V L G + VP V++
Sbjct: 361 QAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFP 393
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-05
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 626 ADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLES 685
DK K I+AS S L++ ++E+ + + + + + +A N E
Sbjct: 483 KDKGTGKE-QKITITAS------SGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
Query: 686 LLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745
++ + L+ EE + ++ K ++E WL+E+ + + +E K E+ +V
Sbjct: 536 YVYSLEKSLK-EEGDKLPEADKKK-----VEEAIEWLKEELEGEDKEEIEAKTEELQKVV 589
Query: 746 VPIWERHRE 754
PI ER +
Sbjct: 590 QPIGERMYQ 598
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-04
Identities = 63/333 (18%), Positives = 118/333 (35%), Gaps = 38/333 (11%)
Query: 539 ESGILSL-VNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINEAVDEGNKTAE 597
S IL IE + EK E E +++L L L R + +E + E +++ K E
Sbjct: 669 NSSILERRREIEELEEKIEELEEKIAELEKALAEL--RKELEE----LEEELEQLRKELE 722
Query: 598 EPSKNVNSTESQQQSAEESVKNATQTPD------ADKKPKIVTVKEPISASETRYGVSTL 651
E S+ +++ E V+ + + + +I ++E + +E +
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782
Query: 652 NEKQVEKSLSKL-DSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKT 710
+++E + +L + L + A L L + + +LE + +
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE----------SLERR 832
Query: 711 IVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALN 770
I + + LEE D+ EI L I E E + SL AL
Sbjct: 833 IAATERRLED-LEEQIEELSEDIESLAA-EIEELEELIEELESELEALLNERASLEEALA 890
Query: 771 VSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKS--- 827
+ + + LS E E EL+ L + + ++ E E + L++
Sbjct: 891 LLRSEL---EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
Query: 828 ------DPIVLTIRSIVEKIRALEREVRYLENK 854
+ I + R ++ LENK
Sbjct: 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 929 | |||
| KOG0104|consensus | 902 | 100.0 | ||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0103|consensus | 727 | 100.0 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.96 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.95 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.94 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.88 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.85 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.66 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.62 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.54 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.45 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.43 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.31 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.28 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.19 | |
| PTZ00452 | 375 | actin; Provisional | 99.17 | |
| PTZ00281 | 376 | actin; Provisional | 99.13 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.12 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.11 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.1 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.08 | |
| KOG0679|consensus | 426 | 98.64 | ||
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.63 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.62 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.6 | |
| PRK15027 | 484 | xylulokinase; Provisional | 98.58 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.53 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 98.46 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.38 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 98.34 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 98.29 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 98.23 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 98.17 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 98.17 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.07 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 98.06 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 98.05 | |
| PLN02295 | 512 | glycerol kinase | 98.01 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 98.01 | |
| KOG0676|consensus | 372 | 97.81 | ||
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.81 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.79 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.75 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.65 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.57 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.5 | |
| KOG0797|consensus | 618 | 96.86 | ||
| PRK04123 | 548 | ribulokinase; Provisional | 96.85 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 96.81 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.71 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 96.48 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 96.3 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 96.14 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 96.01 | |
| PLN02669 | 556 | xylulokinase | 95.78 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 95.36 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 95.14 | |
| KOG2517|consensus | 516 | 95.03 | ||
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.94 | |
| KOG0677|consensus | 389 | 94.49 | ||
| KOG2531|consensus | 545 | 94.06 | ||
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 93.71 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 93.43 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 93.3 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 93.22 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 92.88 | |
| KOG0681|consensus | 645 | 92.2 | ||
| PRK09557 | 301 | fructokinase; Reviewed | 91.94 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 91.69 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 90.78 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 90.64 | |
| KOG0680|consensus | 400 | 90.04 | ||
| PTZ00288 | 405 | glucokinase 1; Provisional | 89.68 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 89.07 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 88.73 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 88.67 | |
| PF13941 | 457 | MutL: MutL protein | 88.65 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 88.42 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 88.2 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 86.82 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 86.6 | |
| PTZ00107 | 464 | hexokinase; Provisional | 86.32 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 84.35 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 84.34 | |
| PRK05082 | 291 | N-acetylmannosamine kinase; Provisional | 84.32 | |
| KOG0100|consensus | 663 | 84.21 | ||
| KOG1385|consensus | 453 | 84.09 | ||
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 83.82 | |
| PRK09604 | 332 | UGMP family protein; Validated | 83.79 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 83.41 | |
| KOG1369|consensus | 474 | 83.25 | ||
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 83.05 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 82.98 | |
| KOG0681|consensus | 645 | 82.87 | ||
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 82.5 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 81.67 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 81.65 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 81.04 | |
| PF11593 | 379 | Med3: Mediator complex subunit 3 fungal; InterPro: | 80.38 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 80.19 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 80.09 |
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-134 Score=1120.11 Aligned_cols=875 Identities=46% Similarity=0.718 Sum_probs=757.7
Q ss_pred HHHHHHHHHHHhhhcccCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCC
Q psy7891 7 TLCSSVVLLLTLFEHSYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86 (929)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~ 86 (929)
.+++.+++++++.+++..++|++||||+.|++||+++||.|++|++|..++|++|++|+|.+++|+||++|..+++|+|+
T Consensus 4 ~~llv~l~~~~~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~ 83 (902)
T KOG0104|consen 4 RVLLVILLLCLFVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQ 83 (902)
T ss_pred hhHHHHHHHHHHhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcH
Confidence 45556666666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhhhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEE
Q psy7891 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVI 166 (929)
Q Consensus 87 ~t~~~~K~llG~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VI 166 (929)
+++.+++.|||+..+||.+..|.+++|++.++.++.|++|.|.+++...|++|+|+||+|.+.++.|+.+...+|.++||
T Consensus 84 ~~~~~l~~llgk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~Vi 163 (902)
T KOG0104|consen 84 STYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVI 163 (902)
T ss_pred HHHHHHHHHhCcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEE
Confidence 99999999999999999999999999999999998999999999997799999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccC
Q psy7891 167 IVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKER 246 (929)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~ 246 (929)
|||.||++.||+++++||++||++++.||||.+||||+||++++..++.+ +++++|||||+|+|.++||.|..++.+..
T Consensus 164 TVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~-~q~~i~YDMGs~sT~Ativsy~~v~~k~~ 242 (902)
T KOG0104|consen 164 TVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINET-PQHYIFYDMGSGSTSATIVSYQLVKTKEQ 242 (902)
T ss_pred eCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCC-ceEEEEEecCCCceeEEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999988 99999999999999999999998887766
Q ss_pred CcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee
Q psy7891 247 GFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326 (929)
Q Consensus 247 G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~ 326 (929)
| ...+++++++++||..|||..|..+|.+||.+.|.++++.+.++..|||+|+||.++|+++|.+||+|+++.++|++
T Consensus 243 g--~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEs 320 (902)
T KOG0104|consen 243 G--GKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIES 320 (902)
T ss_pred c--CccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 5 45789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCch
Q psy7891 327 LIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTD 405 (929)
Q Consensus 327 l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~d 405 (929)
|++|+||+.+|||++||++|.+++.|+..||.++|.+++++.++|+.|+|+||+||+|.||+.|.+++| .++++++|+|
T Consensus 321 L~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaD 400 (902)
T KOG0104|consen 321 LIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNAD 400 (902)
T ss_pred HhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred HHHHhhHHHHHHhhcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCceEEEEE
Q psy7891 406 EAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVS 485 (929)
Q Consensus 406 eaVA~GAa~~aa~~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~ 485 (929)
||+++||+|+||.||.+|++++|.|.|.++|||.+.+.+..+-...++....+|++|.+||++++++|+.++++|.+.+.
T Consensus 401 EA~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n 480 (902)
T KOG0104|consen 401 EAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNIN 480 (902)
T ss_pred HHHHHHHHHHHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccc
Confidence 99999999999999999999999999999999999998652201223345679999999999999999999999999998
Q ss_pred eccCcCcCChhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccc
Q psy7891 486 YASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKL 565 (929)
Q Consensus 486 ~g~~~~~~~~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~ 565 (929)
|+ .. | .++.+|.++||..+..+..+...+.++|+++|.+|.+|++.|+.++++|++..+..+ + ..
T Consensus 481 ~~-~~-----------~-~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~-~-~~ 545 (902)
T KOG0104|consen 481 YG-DL-----------G-QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDS-G-DK 545 (902)
T ss_pred hh-hh-----------c-cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCccc-c-hh
Confidence 88 32 2 356789999999998887666677899999999999999999999999988533322 1 12
Q ss_pred cccccccccCCCCCCCCC-Ccccc--cc---cCCCCCC--CCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeec
Q psy7891 566 GNTLTSLFSRSKTDENEK-PINEA--VD---EGNKTAE--EPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKE 637 (929)
Q Consensus 566 ~~~~~~~f~~~~~~~~~~-~~~~~--~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 637 (929)
..+++.+|++++-+++.+ ..+++ ++ ++.+.++ +..+. ++ +++.+. ++.++.. +.+..++...-.+.+
T Consensus 546 ~st~~K~~~~~e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~-d~--s~e~k~-e~~t~e~-~~~~~~~~~~~p~~~ 620 (902)
T KOG0104|consen 546 KSTLSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEE-DA--SQEDKT-EKETSEA-QKPTEKKETPAPMVV 620 (902)
T ss_pred hhhhhccccccccccccccccchhhhhhhccCccccccccccccc-cc--cccccc-cccchhc-cCcchhhcccCccee
Confidence 234444554322111111 01111 00 0111011 11111 11 111111 1111000 001111111222333
Q ss_pred cceeeEeecCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHH
Q psy7891 638 PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDE 717 (929)
Q Consensus 638 ~l~v~~~~~~~~~ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e 717 (929)
.+.+..++.+.+.|+...+..+..++..+.++|+.+.+|++|.|.||+|+|++.++|++++|.++.+++|++.|.+.+..
T Consensus 621 ~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~ 700 (902)
T KOG0104|consen 621 RLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSL 700 (902)
T ss_pred EeeeeeecccccCCchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHH
Confidence 46677778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhcc---ccCcCCcccCCC
Q psy7891 718 ITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNL---SLNTNETEDLNL 794 (929)
Q Consensus 718 ~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 794 (929)
+.+||+|++.+.++++|.+++.+|++++..+.+|..++..+|..++.|..+|+++.+|+...+++ ++.. ..
T Consensus 701 ~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d------~~ 774 (902)
T KOG0104|consen 701 LMDWLEEDGSQTPTEMLTEKLAELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKD------TI 774 (902)
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhc------cc
Confidence 99999999999999999999999999999999999999999999999999999999999998854 3332 36
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCCCCccccc
Q psy7891 795 FSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSKKKE 874 (929)
Q Consensus 795 ~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k~~~pk~~~~~~~~~~~~~ 874 (929)
|+..+++.|.+.++++..||++....|.++++++||++++.||..|++.|++++.+++||+|.++|++.++++.+++..+
T Consensus 775 ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~~~~~k~~e~k~k~~~ 854 (902)
T KOG0104|consen 775 FTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRKPRKQKKKEKKKKTKE 854 (902)
T ss_pred hhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccCccccchhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7891 875 DKPKNKDSDKTKPSETEQSKPEEQPAGDQEPLTPKPS 911 (929)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (929)
++.+...++ +++...|+++..++-....++.++.|+
T Consensus 855 e~~~s~~~~-~~~~~ae~s~e~~t~e~~~e~~~~~P~ 890 (902)
T KOG0104|consen 855 EKEESESND-ETEETAENSTETETTEVNDEQQTQEPS 890 (902)
T ss_pred hhhhhccCC-CCcchhhccccccceecccccCCCCCc
Confidence 888877765 555556666666666655566666665
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-119 Score=939.76 Aligned_cols=603 Identities=29% Similarity=0.438 Sum_probs=559.8
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
...||||||||||+||+++++| .++|+.|.+|+|.+||+|+|.+.+|++|++|.+++..||+||+++.|||||+.|+|+
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNg-rvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNG-RVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCC-eEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 3579999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCc--eeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDN--ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~--~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
.+|...++|||..+..++ ...+.+.++++ +.|+|+++.||+|..+++.|+.|+|..++++|+|||+||+++||+|++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~-kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDG-KPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEcCCC-CccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999997665554 77788888754 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|..+|||+|+|+||||||||++||+.+... .+++||||+||||||||++.+. ++.|+|+++.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~g-----EknilVfDLGGGTFDVSlLtId------------nGVFeVlaTn 255 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDG-----EKNILVFDLGGGTFDVSLLTID------------NGVFEVLATN 255 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCC-----cceEEEEEcCCceEEEEEEEEc------------CceEEEEecC
Confidence 9999999999999999999999999998763 8999999999999999999986 3499999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHH
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 341 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~e 341 (929)
||.+|||.|||+++++||.+.|++ +++.|++.+-|++.+|+++||+||+.||...++.+.|++|+++.||+-++||..
T Consensus 256 GDThLGGEDFD~rvm~~fiklykk--K~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAk 333 (663)
T KOG0100|consen 256 GDTHLGGEDFDQRVMEYFIKLYKK--KHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAK 333 (663)
T ss_pred CCcccCccchHHHHHHHHHHHHhh--hcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhH
Confidence 999999999999999999999999 777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
||++.-+||.....|++++|+++++...+|+.|+||||++|||.||++|+++|+ ++.++.+|||||||+|||.||..+|
T Consensus 334 FEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvls 413 (663)
T KOG0100|consen 334 FEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLS 413 (663)
T ss_pred HHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 497 (929)
+.-...++.+.|++|+.+||+.. |+ .+..|||||+.+|.+++..|++..++ +.|.+|+| ++.... +
T Consensus 414 Gee~t~divLLDv~pLtlGIETv-----GG---VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEG-ER~mtk--d 482 (663)
T KOG0100|consen 414 GEEDTGDIVLLDVNPLTLGIETV-----GG---VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEG-ERPMTK--D 482 (663)
T ss_pred cccCcCcEEEEeeccccceeeee-----cc---eeeccccCCcccCccccceeeecccCCceEEEEEeec-cccccc--c
Confidence 98889999999999999999987 44 38899999999999999999988665 89999999 877433 6
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
|+.+|. |.++||+++|+++ ++|+|+|++|.||||+|++.+ .++.
T Consensus 483 n~lLGk-----FdltGipPAPRGv-------pqIEVtFevDangiL~VsAeD---------Kgtg--------------- 526 (663)
T KOG0100|consen 483 NHLLGK-----FDLTGIPPAPRGV-------PQIEVTFEVDANGILQVSAED---------KGTG--------------- 526 (663)
T ss_pred cccccc-----ccccCCCCCCCCC-------ccEEEEEEEccCceEEEEeec---------cCCC---------------
Confidence 666665 5889999999988 799999999999999999864 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
++.+++ +.++...||+++|+
T Consensus 527 ---------------------------------------------------~~~kit---------ItNd~~rLt~EdIe 546 (663)
T KOG0100|consen 527 ---------------------------------------------------KKEKIT---------ITNDKGRLTPEDIE 546 (663)
T ss_pred ---------------------------------------------------CcceEE---------EecCCCCCCHHHHH
Confidence 001111 34567789999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch-hhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL-EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~-~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+|++..++|..+|+..+++.++||.||+|.|++++.+.+ +.+...+++++++.+...+++..+||++ +.++.+++|.+
T Consensus 547 rMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~-n~~a~~Ee~~e 625 (663)
T KOG0100|consen 547 RMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLES-NQDASKEEFKE 625 (663)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhh-cccccHHHHHH
Confidence 999999999999999999999999999999999999986 6799999999999999999999999996 59999999999
Q ss_pred HHHHHHhchhhHHHHHHhh
Q psy7891 737 KLNEINSLVVPIWERHREH 755 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e~ 755 (929)
|+++|..++.||..++|..
T Consensus 626 k~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 626 KKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999988764
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-114 Score=963.25 Aligned_cols=725 Identities=30% Similarity=0.460 Sum_probs=646.1
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
|+|+|||||+.+|.+|+++.| ++++|.|+.|.|.||++|+|..++|++|.+|..+..+|+.|++..+|||+|+.|+||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~-gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQG-GIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccC-CceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 569999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeec-CCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVA-DEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~-~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
++...+++|+..+.. |+..|.-+-+++..+.|++++|+||+|.+|+..++..+..++.+|||+||+||++.||+++++|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 999999999966554 4444544455677788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCC-CCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFN-ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~-~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
|++|||++++||+|.+|+||+||+++.+... ...+++|+|+|||++++.+|++.|. .| .+.++++.+
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~------kG------~lkvl~ta~ 227 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFT------KG------KLKVLATAF 227 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeec------cC------cceeeeeec
Confidence 9999999999999999999999999876432 2238999999999999999999997 35 899999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
|..+||++||..|.+||+++|+. ++++|+..|+++..||+.+|||+|++||+|+....+|+|++++.|.+..|+|++|
T Consensus 228 D~~lGgr~fDe~L~~hfa~efk~--kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEf 305 (727)
T KOG0103|consen 228 DRKLGGRDFDEALIDHFAKEFKT--KYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEF 305 (727)
T ss_pred ccccccchHHHHHHHHHHHHhcc--ccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHH
Confidence 99999999999999999999999 5556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
|++|.++++|+..++.++|+++++..+||+.|++|||+||||.|++.|.++||+.+++++|.|||||+||||+||++|+.
T Consensus 306 Eel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~ 385 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPT 385 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCceEEEEEeccCcCcCChhhhcccc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLG 502 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~~~~g 502 (929)
||+|+|.++|+.||+|.+.|....+|++. ...+||+|.++|..|.+||++. .+|++.++|+ +...+|. .
T Consensus 386 frVRef~v~Di~pysIs~~w~~~~ed~~~---~~evF~~~~~~p~~K~lT~~Rk-~~F~lea~yt-~~~~lp~------~ 454 (727)
T KOG0103|consen 386 FRVREFSVEDIVPYSISLRWVKQGEDGGS---VTEVFPKGHPSPSVKLLTFNRK-GPFTLEAKYT-KVNKLPY------P 454 (727)
T ss_pred ccceecceecccceeEEEEeccccccCCC---ceeeecCCCCCCCceEEEEEec-CceEEEEEec-cccccCC------C
Confidence 99999999999999999999987766531 4689999999999999999998 8999999999 7666662 2
Q ss_pred ceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCC
Q psy7891 503 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 582 (929)
Q Consensus 503 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 582 (929)
...|++|.+.++.+. ..++..+++|++++|.+||++|.++.++.+...++ .+.
T Consensus 455 ~~kI~~~~i~~v~~~------~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~-------------------- 507 (727)
T KOG0103|consen 455 KPKIEKWTITGVTPS------EDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEE-VPE-------------------- 507 (727)
T ss_pred CCceeeEEecccccC------ccccccceeEEEEEcCccceeeecceeecccchhc-ccc--------------------
Confidence 346788899988864 23355789999999999999999998775443221 100
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHH
Q psy7891 583 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662 (929)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~ 662 (929)
.+ .+ ...+.+ .- +..+..+.|+++++..|++..... ..|+..+++..+++
T Consensus 508 ~~--~e-------------~~~~~~-------~~------~~~~~~~~k~kvk~~~L~~~~~~~--~~l~~~~l~~~~e~ 557 (727)
T KOG0103|consen 508 EP--ME-------------YDDAAK-------ML------ERIAPAENKKKVKKVDLPIEAYTK--GALITDELELYIEK 557 (727)
T ss_pred ch--hh-------------hhcchh-------hh------hhhccccccceeeeccccceeeec--cccCHHHHHHHHHH
Confidence 00 00 000000 00 001111224455566777664432 46999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 742 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~ 742 (929)
+.+|..+|+...++.+++|+||+|||+||++|. +.|.+|+++++|++|...|+++++|||+||+|.++..|..|+.+|+
T Consensus 558 E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk 636 (727)
T KOG0103|consen 558 ENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELK 636 (727)
T ss_pred HHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999997 7999999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7891 743 SLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQN 822 (929)
Q Consensus 743 ~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~ 822 (929)
.+++ ..|+.+++.||.+++.+.+.|+.++..+.. +..++...+++.+.|++.++.+|+
T Consensus 637 ~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------------~~~k~~~~~~~a~kw~~~~~~~q~ 694 (727)
T KOG0103|consen 637 KLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------------EMEKVLLEIEEAEKWLERKSNKQN 694 (727)
T ss_pred hhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 889999999999999999999888765433 577888999999999999999999
Q ss_pred hcCCCCCcceeHHHHHHHHHHHHHHHHHHHhccc
Q psy7891 823 QLKKSDPIVLTIRSIVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 823 ~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~k 856 (929)
+++++.+| +.+++++++.++|+..|.++++++|
T Consensus 695 ~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 695 KLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred cccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 99999999 9999999999999999999998874
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-98 Score=898.74 Aligned_cols=606 Identities=29% Similarity=0.449 Sum_probs=538.0
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.+.+||||||||||+||++.+| +++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.++|+
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNE-NVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCC-ceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4679999999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
.++.+.+++||..+...+....+.+...+ +..|+|++|++++|++|++.|+.++|..+.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 99999999999765544444445554443 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
||++|||++++||+||+|||++|++.+... . +.++|||||||||||+||+++. .| .++|+++.|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~---~-~~~vlv~D~GggT~dvsv~~~~------~~------~~~v~a~~g 225 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGD---G-EKNVLIFDLGGGTFDVSLLTIE------DG------IFEVKATAG 225 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCC---C-CCEEEEEECCCCeEEEEEEEEe------CC------eEEEEEecC
Confidence 999999999999999999999999865431 2 6889999999999999999986 23 799999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
+..+||++||.+|++||.++|..+++ +.++..+++++.||+.+||++|+.||.+.++.+.|++++++.|+.++|||++|
T Consensus 226 d~~lGG~d~D~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~f 304 (653)
T PTZ00009 226 DTHLGGEDFDNRLVEFCVQDFKRKNR-GKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARF 304 (653)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHH
Confidence 99999999999999999999987442 35778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
|++|+++++++..+|+++|+.+++...+|+.|+||||+||||+||++|+++|+ ..+..++|||+|||+|||++|+++++
T Consensus 305 e~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 305 EELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999997 68889999999999999999999997
Q ss_pred C--cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChh
Q psy7891 422 G--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPE 496 (929)
Q Consensus 422 ~--f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~ 496 (929)
. |+++++.+.|++||+||++.. ++ .+.+||++|++||++++.+|++..++ +.|.||+| +.....
T Consensus 385 ~~~~~~~~~~~~dv~p~slgi~~~----~~----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~eg-e~~~~~-- 453 (653)
T PTZ00009 385 EQSSQVQDLLLLDVTPLSLGLETA----GG----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEG-ERAMTK-- 453 (653)
T ss_pred CccccccceEEEeecccccCcccc----CC----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEec-ccccCC--
Confidence 5 789999999999999998754 22 26789999999999999999876443 99999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.+.|.|+++.+++. +.|+|+|++|.||+|+|++.+ ..+.
T Consensus 454 ~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~~~~---------~~t~-------------- 498 (653)
T PTZ00009 454 DNN-----LLGKFHLDGIPPAPRGV-------PQIEVTFDIDANGILNVSAED---------KSTG-------------- 498 (653)
T ss_pred CCc-----eEEEEEEcCCCCCCCCC-------ceEEEEEEECCCCeEEEEEec---------ccCC--------------
Confidence 333 46677888998765443 579999999999999998753 1000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
+.. .+.+. ....+|+.+++
T Consensus 499 ------------------------------------------------------~~~----~~~i~---~~~~~ls~~~i 517 (653)
T PTZ00009 499 ------------------------------------------------------KSN----KITIT---NDKGRLSKADI 517 (653)
T ss_pred ------------------------------------------------------cee----eEEEe---eccccccHHHH
Confidence 000 12222 12356999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++.+.+|..+|+.++++.+++|+||+|||++|++|++++|..++++++|++|.+.|+++++||| ++++++.++|++
T Consensus 518 ~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~-~~~~~~~~~~~~ 596 (653)
T PTZ00009 518 DRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLE-KNQLAEKEEFEH 596 (653)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHH
Confidence 9999999999999999999999999999999999999975569999999999999999999999999 578899999999
Q ss_pred HHHHHHhchhhHHHHHHhh
Q psy7891 737 KLNEINSLVVPIWERHREH 755 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e~ 755 (929)
|+++|+++++||..|++..
T Consensus 597 kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 597 KQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999997543
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-95 Score=872.89 Aligned_cols=594 Identities=26% Similarity=0.381 Sum_probs=525.0
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .+.++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGG-KPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred cEEEEEeCCCcEEEEEEECC-eEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 58999999999999999999 667889999999999999996 57899999999999999999999999999999866
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
++...+++||...... .|.+.+.+. .+..|+|++|++|+|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNE--QGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 5556677888654433 344555542 2468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+||||+|++.+. . +.++|||||||||||+||+++. .| .++|+++.|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~-----~-~~~vlV~DlGgGT~Dvsv~~~~------~g------~~~V~at~gd 219 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS-----S-SQTVLVFDLGGGTFDVSLLEVG------NG------VFEVKATSGD 219 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC-----C-CCEEEEEECCCCeEEEEEEEEc------CC------eEEEEEeecC
Confidence 999999999999999999999998653 2 6899999999999999999986 23 7999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||.+||.+|++||.++|..+ .+.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||
T Consensus 220 ~~lGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (668)
T PRK13410 220 TQLGGNDFDKRIVDWLAEQFLEK--EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDR 297 (668)
T ss_pred CCCChhHHHHHHHHHHHHHHHhh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECH
Confidence 99999999999999999999884 445888899999999999999999999999999999987643 478899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++||++|.++++++..+|+++|+++++.+.+|+.|+||||+||||+|+++|+++||..+..++|||||||+|||++|+++
T Consensus 298 ~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~l 377 (668)
T PRK13410 298 KQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGIL 377 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+||++|++||++++.+|++..+ .+.|.||+| +.....
T Consensus 378 s~~--~~~~~l~Dv~p~slgie~~----~g----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qG-e~~~~~-- 444 (668)
T PRK13410 378 AGE--LKDLLLLDVTPLSLGLETI----GG----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQG-EREMAS-- 444 (668)
T ss_pred ccc--ccceeEEeeccccccceec----CC----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEee-cccccc--
Confidence 984 6789999999999999886 22 2779999999999999999987643 489999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+++.|.|+++++.+. ++|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~l~~i~~~~~g~-------~~I~v~f~id~nGiL~V~a~d~---------~tg-------------- 489 (668)
T PRK13410 445 DNK-----SLGRFKLSGIPPAPRGV-------PQVQVAFDIDANGILQVSATDR---------TTG-------------- 489 (668)
T ss_pred CCc-----eEEEEEEeCCCCCCCCC-------CeEEEEEEECCCcEEEEEEEEc---------CCC--------------
Confidence 333 46677899999876554 6899999999999999998631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++. .+.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~----~~~i~----~~~~ls~~ei 507 (668)
T PRK13410 490 ------------------------------------------------------REQ----SVTIQ----GASTLSEQEV 507 (668)
T ss_pred ------------------------------------------------------cee----eeeec----ccccCCHHHH
Confidence 000 11121 2356999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhch--hhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLEL--EEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~--~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+++++++.+|..+|+.++++.++||+||+|||++|++|.+ +.|..++++++|++|..+|+++++|||+++.+..++.|
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~ 587 (668)
T PRK13410 508 NRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAV 587 (668)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999964 36889999999999999999999999988888888999
Q ss_pred HHHHHHHHhchhhHHHHHHh
Q psy7891 735 ENKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~~e 754 (929)
.++++.|+.++.||..|+.|
T Consensus 588 ~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 588 ADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-95 Score=874.09 Aligned_cols=588 Identities=26% Similarity=0.399 Sum_probs=522.5
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
++|||||||||||+||++.+| +++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.++|+
T Consensus 41 ~~viGIDlGTt~s~va~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGS-QPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred CcEEEEEECcccEEEEEEeCC-eeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 469999999999999999887 889999999999999999996 468999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.++.+.+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 120 ~~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 120 ATKKEQKILPYKIVRAS--NGDAWIEAQG-KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHHhhhccCCeEEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999999655433 4555666664 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+|||++|+.... . ++++|||||||||||+||+++. .| .++|++++|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSv~~~~------~g------~~~v~a~~gd 258 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKN-----D-GKTIAVYDLGGGTFDISILEIL------GG------VFEVKATNGN 258 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccC-----C-CcEEEEEeCCCCeEEEEEEEec------CC------eeEEEecccC
Confidence 999999999999999999999997643 2 6899999999999999999986 24 7999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||++||.+|++||.++|..+ .+.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||
T Consensus 259 ~~LGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR 336 (663)
T PTZ00400 259 TSLGGEDFDQRILNYLIAEFKKQ--QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSR 336 (663)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhh--cCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECH
Confidence 99999999999999999999884 455788899999999999999999999999989999887654 578999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++|+++|++++.++..+|+++|+++++.+.+|+.|+||||+||+|+||++|+++||.++..++|||+|||+|||++|+++
T Consensus 337 ~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 337 AKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+||++|+++|.+++.+|++..+ .+.|.||+| +.....
T Consensus 417 ~~~--~~~~~~~dv~p~slgi~~~----~g----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~eg-e~~~~~-- 483 (663)
T PTZ00400 417 KGE--IKDLLLLDVTPLSLGIETL----GG----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQG-EREMAA-- 483 (663)
T ss_pred cCC--ccceEEEeccccceEEEec----CC----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEe-cCccCC--
Confidence 975 6789999999999999886 22 2778999999999999999987644 389999999 765433
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+++.|.|+++++.+. +.|+|+|.+|.||+|+|++.+. .+.
T Consensus 484 ~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~~~---------~~~-------------- 528 (663)
T PTZ00400 484 DNK-----LLGQFDLVGIPPAPRGV-------PQIEVTFDVDANGIMNISAVDK---------STG-------------- 528 (663)
T ss_pred cCc-----eeEEEEEcCCCCCCCCC-------ceEEEEEEECCCCCEEEEEEec---------cCC--------------
Confidence 333 46667888998765443 5799999999999999987631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++. .+.++ ...+|+.+++
T Consensus 529 ------------------------------------------------------~~~----~~~i~----~~~~ls~~ei 546 (663)
T PTZ00400 529 ------------------------------------------------------KKQ----EITIQ----SSGGLSDEEI 546 (663)
T ss_pred ------------------------------------------------------cEE----EEEee----ccccccHHHH
Confidence 001 12221 1256999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|+||+|||.+|++|. ++..++++++|++|.+.++++++|||++ +.++|++
T Consensus 547 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~ 620 (663)
T PTZ00400 547 EKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKISDADKDELKQKITKLRSTLSSE----DVDSIKD 620 (663)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3889999999999999999999999964 4789999
Q ss_pred HHHHHHhchhhHHHHH
Q psy7891 737 KLNEINSLVVPIWERH 752 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~ 752 (929)
++++|++++.++..++
T Consensus 621 k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 621 KTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-94 Score=862.69 Aligned_cols=590 Identities=26% Similarity=0.387 Sum_probs=520.5
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .+.++.|.+|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++|+.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGG-KPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 48999999999999999999 5679999999999999999964 689999999999999999999999999999998864
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
...+++||..+... ++.+.+.+++ ..|+|+++++|+|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 82 --~~~~~~~~~~v~~~--~~~~~~~i~~-~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 --EERSRVPYTCVKGR--DDTVNVQIRG-RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred --HHhhcCCceEEecC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45678898765443 3556666665 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+.. . +.++|||||||||||+||+++. .| .++|++++|+.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~----~-~~~vlV~DlGgGT~dvsi~~~~------~~------~~~V~at~gd~ 219 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD----Q-EQLILVFDLGGGTFDVSILQLG------DG------VFEVKATAGNN 219 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC----C-CCEEEEEEcCCCeEEEEEEEEe------CC------EEEEEEEecCC
Confidence 999999999999999999999986543 2 6889999999999999999986 23 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
+|||++||.+|++||.++|..+ .+.++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||+
T Consensus 220 ~LGG~dfD~~l~~~l~~~f~~~--~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~ 297 (653)
T PRK13411 220 HLGGDDFDNCIVDWLVENFQQQ--EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRA 297 (653)
T ss_pred CcCHHHHHHHHHHHHHHHHHHh--hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHH
Confidence 9999999999999999999884 445788899999999999999999999999999999887543 5789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhh
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+|+++|+++++++..+|+++|+++++.+++|+.|+||||+||+|+||+.|+++|| ..+..++|||+|||+|||++|+++
T Consensus 298 ~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l 377 (653)
T PRK13411 298 KFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVL 377 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998 688899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. ++ .+.+||++|++||++++.+|.+..+ .+.|.||+| +.....
T Consensus 378 ~~~--~~~~~~~dv~p~slgi~~~-----~~---~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~~-- 444 (653)
T PRK13411 378 GGE--VKDLLLLDVTPLSLGIETL-----GE---VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQG-ERAMAK-- 444 (653)
T ss_pred cCC--ccceeeeecccceeeEEec-----CC---ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEe-cCcccc--
Confidence 976 7889999999999999886 22 2778999999999999999987544 389999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.+.|.|+++++.+. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~Gil~v~a~d~---------~t~-------------- 489 (653)
T PRK13411 445 DNK-----SLGKFLLTGIPPAPRGV-------PQIEVSFEIDVNGILKVSAQDQ---------GTG-------------- 489 (653)
T ss_pred cCc-----eeeEEEEcCCCCCCCCC-------ccEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 333 46677889998876544 5799999999999999997631 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
++.. +.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~~----~~i~----~~~~ls~~ei 507 (653)
T PRK13411 490 ------------------------------------------------------REQS----IRIT----NTGGLSSNEI 507 (653)
T ss_pred ------------------------------------------------------ceEe----eEEe----ccccchHHHH
Confidence 0001 1111 1245999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|+||+|||.+|++|+ ++..++++++|+++.+.|+++++||++ .+++.++|++
T Consensus 508 ~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~ 583 (653)
T PRK13411 508 ERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQ 583 (653)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 999999999999999999999999999999999999995 368899999999999999999999996 4578999999
Q ss_pred HHHHHHhchhhHHHHHHh
Q psy7891 737 KLNEINSLVVPIWERHRE 754 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e 754 (929)
++++|++++.++..+++.
T Consensus 584 ~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 584 QLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999987653
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-92 Score=851.65 Aligned_cols=587 Identities=28% Similarity=0.428 Sum_probs=520.6
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++++| .++++.|..|+|.+||+|+|. +++++||..|..++.++|.++++++|||||+. ++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGG-EPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred cEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 58999999999999999998 667999999999999999996 77899999999999999999999999999998 677
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.+.+++||..+... ++...+.+++ ..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 80 ~~~~~~~~p~~~~~~~--~~~~~~~~~~-~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 80 VQKDIKLVPYKIVKAD--NGDAWVEIDG-KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 8888889998666443 4555566665 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+. . ++++|||||||||||+||+++. .+.++|++++|+.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~-----~-~~~vlV~D~GggT~dvsv~~~~------------~~~~~vla~~gd~ 218 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK-----G-DEKILVYDLGGGTFDVSILEIG------------DGVFEVLSTNGDT 218 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC-----C-CCEEEEEECCCCeEEEEEEEEe------------CCeEEEEEecCCC
Confidence 99999999999999999999997652 2 6899999999999999999986 2379999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||.+|++|+.++|..++ +.++..+++++.||+.+||++|+.||.+..+.+.++.++.+ .++.+.|||+
T Consensus 219 ~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 296 (627)
T PRK00290 219 HLGGDDFDQRIIDYLADEFKKEN--GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRA 296 (627)
T ss_pred CcChHHHHHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHH
Confidence 99999999999999999999844 55788899999999999999999999999999999987653 6789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|++++
T Consensus 297 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 297 KFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+||+++. ++ .+.+||++|+++|++++.+|++..+ .+.|.|||| +..... +
T Consensus 377 ~~--~~~~~~~d~~~~slgi~~~----~~----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~--~ 443 (627)
T PRK00290 377 GD--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQG-EREMAA--D 443 (627)
T ss_pred CC--ccceeeeeccceEEEEEec----CC----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEe-cccccC--c
Confidence 74 7889999999999999876 22 2678999999999999999987644 389999999 765332 3
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+ ..|+++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 444 ~-----~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~gil~v~a~~~---------~~~--------------- 487 (627)
T PRK00290 444 N-----KSLGRFNLTGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKDK---------GTG--------------- 487 (627)
T ss_pred C-----ceEEEEEECCCCCCCCCC-------ceEEEEEEECCCceEEEEEEEc---------cCC---------------
Confidence 3 346777889998765443 5799999999999999987631 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
+... +.+. ...+|+.++++
T Consensus 488 -----------------------------------------------------~~~~----~~i~----~~~~ls~e~i~ 506 (627)
T PRK00290 488 -----------------------------------------------------KEQS----ITIT----ASSGLSDEEIE 506 (627)
T ss_pred -----------------------------------------------------ceeE----EEec----cccccCHHHHH
Confidence 0001 1111 12469999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++++++.+|...|+.++++.+++|+||+|||.+|++|+ ++..++++++|++|.+.|+++++|||++ +.++|+++
T Consensus 507 ~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k 580 (627)
T PRK00290 507 RMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAK 580 (627)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 5888999999999999999999999964 67899999
Q ss_pred HHHHHhchhhHHHHHHh
Q psy7891 738 LNEINSLVVPIWERHRE 754 (929)
Q Consensus 738 l~eL~~~~~pi~~R~~e 754 (929)
+++|+++++++..|+++
T Consensus 581 ~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 581 TEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988754
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-92 Score=849.39 Aligned_cols=589 Identities=26% Similarity=0.408 Sum_probs=513.4
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
..|||||||||||+||++.+| .++++.|..|+|.+||+|+|. ++++++|..|..++.++|.++++++|||||+.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECC-eEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 459999999999999999999 667999999999999999996 46899999999999999999999999999999876
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
++...+.+||..+... ++.+.+.+. .+..|+|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~--~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDE--NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecC--CCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4566777888655433 444555542 236899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
||++|||++++||+||+|||++|++.+.. +.++|||||||||||+||+++. .+.++|+++.|
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~~------~~~vlV~DlGgGT~DvSi~~~~------------~~~~eVla~~g 255 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKKS------NETILVFDLGGGTFDVSVLEVG------------DGVFEVLSTSG 255 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccCC------CCEEEEEECCCCeEEEEEEEec------------CCEEEEEEecC
Confidence 99999999999999999999999976532 6799999999999999999976 23799999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeeccc----CcceEEEEe
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVT 338 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~----~~d~~~~it 338 (929)
+.+|||++||..|++|+.++|..+ .+.++..+++++.||+.+||++|+.||.+.++.+.++++.. +.++.+.||
T Consensus 256 d~~LGG~dfD~~L~~~~~~~f~~~--~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~it 333 (673)
T PLN03184 256 DTHLGGDDFDKRIVDWLASNFKKD--EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333 (673)
T ss_pred CCccCHHHHHHHHHHHHHHHHHhh--cCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEEC
Confidence 999999999999999999999884 45578889999999999999999999999999999987653 357899999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
|++||++|.++++++..+|+++|+++++.+.+|+.|+||||+||||.||++|+++||..+..++|||||||+|||++|++
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCCh
Q psy7891 419 LSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNP 495 (929)
Q Consensus 419 ~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~ 495 (929)
+++. ++++.+.|++||+|||++. ++ .+.+|||+|++||++++.+|.+..+ .+.|.||+| +.....
T Consensus 414 ls~~--~~~~~~~dv~p~slgi~~~----~~----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~g-e~~~~~- 481 (673)
T PLN03184 414 LAGE--VSDIVLLDVTPLSLGLETL----GG----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQG-EREFVR- 481 (673)
T ss_pred hccC--ccceEEEecccccceEEec----CC----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEee-cccccc-
Confidence 9974 6789999999999999986 22 2778999999999999999987643 378899999 765433
Q ss_pred hhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccC
Q psy7891 496 EQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSR 575 (929)
Q Consensus 496 ~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~ 575 (929)
++. .|++|.|.|+++++.+. +.|+|+|.+|.||+|+|++.+. .+.
T Consensus 482 -~n~-----~lg~~~i~~i~~~~~g~-------~~i~v~f~id~~GiL~V~a~~~---------~t~------------- 526 (673)
T PLN03184 482 -DNK-----SLGSFRLDGIPPAPRGV-------PQIEVKFDIDANGILSVSATDK---------GTG------------- 526 (673)
T ss_pred -cCc-----eEEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEec---------CCC-------------
Confidence 333 46677888998765443 5799999999999999998641 000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHH
Q psy7891 576 SKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQ 655 (929)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~e 655 (929)
++.. +.++ ...+|+.++
T Consensus 527 -------------------------------------------------------~~~~----~~i~----~~~~ls~ee 543 (673)
T PLN03184 527 -------------------------------------------------------KKQD----ITIT----GASTLPKDE 543 (673)
T ss_pred -------------------------------------------------------eEEE----EEec----ccccccHHH
Confidence 0011 1111 224699999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHH
Q psy7891 656 VEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLE 735 (929)
Q Consensus 656 i~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~ 735 (929)
++++++++.+|..+|+.++++.+++|+||+|||++|++|. ++.+++++++|++|.+.|+++++|||.+ +.+.++
T Consensus 544 i~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik 617 (673)
T PLN03184 544 VERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMK 617 (673)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHH
Confidence 9999999999999999999999999999999999999994 4888999999999999999999999964 456888
Q ss_pred HHHHHHHhchhhHHHHHHh
Q psy7891 736 NKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 736 ~kl~eL~~~~~pi~~R~~e 754 (929)
+++++|.+.+.++..+++.
T Consensus 618 ~~~~~l~~~l~~l~~~~~~ 636 (673)
T PLN03184 618 DAMAALNQEVMQIGQSLYN 636 (673)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888887776543
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-92 Score=839.43 Aligned_cols=589 Identities=25% Similarity=0.369 Sum_probs=521.2
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
..+||||||||||+||++.+| +++++.|..|.|.+||+|+|.++++++|..|..++.++|.++++++|||||+.++|+.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~-~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD-KARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC-ceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999988 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++...+.+||..+... ++...+...++..|+|+++.+++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 106 v~~~~~~~p~~vv~~~--~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAG--NGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHhhccCcEEEEEcC--CCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 9999999999765433 33445555556789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++... . ++++|||||||||||+||+++. .| .++|+++.||.
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~-----~-~~~vlV~DlGGGT~DvSil~~~------~g------~~~V~at~Gd~ 245 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKT-----K-DSLIAVYDLGGGTFDISVLEIA------GG------VFEVKATNGDT 245 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCC-----C-CCEEEEEECCCCeEEEEEEEEe------CC------EEEEEEecCCC
Confidence 99999999999999999999997643 2 6899999999999999999986 24 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
+|||++||.+|++|+.++|.. +++.|+..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||+
T Consensus 246 ~LGG~DfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~ 323 (657)
T PTZ00186 246 HLGGEDFDLALSDYILEEFRK--TSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRS 323 (657)
T ss_pred CCCchhHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHH
Confidence 999999999999999999998 4456888899999999999999999999999999999876542 4689999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+++++|+++++.+.+|+.|+||||+||||.||++|+++||..+..++|||||||+|||++|++++
T Consensus 324 efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 324 KFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLR 403 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998788999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+|||++. +| .+.+||++|++||++++.+|++..+ .+.|.|||| ++.... +
T Consensus 404 ~~--~~~~~l~Dv~p~slgie~~----~g----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qG-e~~~~~--~ 470 (657)
T PTZ00186 404 GD--VKGLVLLDVTPLSLGIETL----GG----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQG-EREMAA--D 470 (657)
T ss_pred cc--cCceEEEeeccccccceec----CC----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEe-cccccc--c
Confidence 85 6789999999999999986 22 3779999999999999999988754 389999999 876443 5
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
|..+ +++.|.|+++++++. +.|+|+|++|.||+|+|++.+. .|.
T Consensus 471 n~~l-----g~~~l~~ip~~~~G~-------~~I~Vtf~iD~nGiL~V~a~d~---------~tg--------------- 514 (657)
T PTZ00186 471 NQMM-----GQFDLVGIPPAPRGV-------PQIEVTFDIDANGICHVTAKDK---------ATG--------------- 514 (657)
T ss_pred cccc-----ceEEEcCCCCCCCCC-------CcEEEEEEEcCCCEEEEEEEEc---------cCC---------------
Confidence 5544 556788999876655 6899999999999999998752 110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
+... +.+. ....|++++++
T Consensus 515 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~i~ 533 (657)
T PTZ00186 515 -----------------------------------------------------KTQN----ITIT----ANGGLSKEQIE 533 (657)
T ss_pred -----------------------------------------------------cEEE----EEec----cCccCCHHHHH
Confidence 0000 1111 22359999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++.+.+..+..+|+.++++.+++|.+|+++|.++..+.+ . ..+++++++.+...+...++||. +.+.+.+.|+++
T Consensus 534 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 608 (657)
T PTZ00186 534 QMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYVSDAEKENVKTLVAELRKAME--NPNVAKDDLAAA 608 (657)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccCCHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHH
Confidence 999999999999999999999999999999999999953 2 46899999999999999999997 334567899999
Q ss_pred HHHHHhchhhHHHH
Q psy7891 738 LNEINSLVVPIWER 751 (929)
Q Consensus 738 l~eL~~~~~pi~~R 751 (929)
+++|++++.++..+
T Consensus 609 ~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 609 TDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-91 Score=839.56 Aligned_cols=585 Identities=29% Similarity=0.439 Sum_probs=515.9
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.++ .
T Consensus 1 ~viGIDlGtt~s~va~~~~g-~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGG-EPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--E 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--H
Confidence 37999999999999999999 5679999999999999999975 489999999999999999999999999999983 4
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.+.+++||. +..+ ++.+.+.+++ ..|+|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||
T Consensus 78 ~~~~~~~~~~~-v~~~--~~~~~~~v~~-~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 78 VTEEAKRVPYK-VVGD--GGDVRVKVDG-KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHHhhcCCee-EEcC--CCceEEEECC-EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 77778889987 4332 4567777765 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+.. . +.++|||||||||||+||+++. .+.++|++++|+.
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~----~-~~~vlV~D~Gggt~dvsv~~~~------------~~~~~v~~~~gd~ 216 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK----K-DEKILVFDLGGGTFDVSILEIG------------DGVFEVLSTAGDT 216 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC----C-CcEEEEEECCCCeEEEEEEEec------------CCeEEEEEecCCc
Confidence 999999999999999999999986532 2 7899999999999999999986 2379999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||..|++||.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.++++..+ .++.+.|||+
T Consensus 217 ~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~ 294 (595)
T TIGR02350 217 HLGGDDFDQRIIDWLADEFKKEE--GIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRA 294 (595)
T ss_pred ccCchhHHHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHH
Confidence 99999999999999999999854 56888899999999999999999999999999999887643 5789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|+++|+.+++.+.+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|++++
T Consensus 295 ~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~ 374 (595)
T TIGR02350 295 KFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLK 374 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++||+||+++. +| .+.+||++|+++|++++.+|++..+ .+.|.||+| +..... +
T Consensus 375 ~~--~~~~~~~d~~~~~igi~~~----~~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~g-e~~~~~--~ 441 (595)
T TIGR02350 375 GD--VKDVLLLDVTPLSLGIETL----GG----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQG-ERPMAA--D 441 (595)
T ss_pred CC--cccceeeecccceeEEEec----CC----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEee-cccccc--c
Confidence 86 7889999999999999886 23 2678999999999999999987643 378999999 765332 3
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+ ..|+.+.|.|+++++.+. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 442 ~-----~~lg~~~i~~~~~~~~g~-------~~i~v~f~~d~~G~l~v~~~~~---------~~~--------------- 485 (595)
T TIGR02350 442 N-----KSLGRFELTGIPPAPRGV-------PQIEVTFDIDANGILHVSAKDK---------GTG--------------- 485 (595)
T ss_pred C-----cEeEEEEECCCCCCCCCC-------ceEEEEEEEcCCCeEEEEEEEc---------cCC---------------
Confidence 3 346677889998765443 5799999999999999998641 000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
++.. +.++ ...+|+.++++
T Consensus 486 -----------------------------------------------------~~~~----~~i~----~~~~ls~~~~~ 504 (595)
T TIGR02350 486 -----------------------------------------------------KEQS----ITIT----ASSGLSEEEIE 504 (595)
T ss_pred -----------------------------------------------------ceEE----EEec----cccccCHHHHH
Confidence 0000 1111 12469999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++++++.+|...|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ +..+|+++
T Consensus 505 ~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~ 578 (595)
T TIGR02350 505 RMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAK 578 (595)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 3688999999999999999999999953 56799999
Q ss_pred HHHHHhchhhHHHHH
Q psy7891 738 LNEINSLVVPIWERH 752 (929)
Q Consensus 738 l~eL~~~~~pi~~R~ 752 (929)
+++|+++++++..++
T Consensus 579 ~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 579 TEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-91 Score=835.18 Aligned_cols=588 Identities=28% Similarity=0.402 Sum_probs=513.9
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ +++++|..|..++.++|.++++++|||||+.+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGG-KPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECC-EEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 58999999999999999999 6679999999999999999964 6799999999999999999999999999999865
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
+....+.+||...... ++.+.+... .+..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~--~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDS--NGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECC--CCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5556677887554332 344555442 2368999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
|++|||++++||+||+|||++|+.... . +.++|||||||||||+||+++. .+.++|++++|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSv~~~~------------~~~~~vla~~gd 219 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK-----N-NETILVFDLGGGTFDVSILEVG------------DGVFEVLSTSGD 219 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC-----C-CCEEEEEEcCCCeEEEEEEEEc------------CCEEEEEEEecC
Confidence 999999999999999999999997643 2 6789999999999999999975 237999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTR 339 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR 339 (929)
..+||++||..|++|+.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++...|||
T Consensus 220 ~~lGG~d~D~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR 297 (621)
T CHL00094 220 THLGGDDFDKKIVNWLIKEFKKKE--GIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTR 297 (621)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcH
Confidence 999999999999999999999844 45788899999999999999999999999999999887642 578899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 340 ~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++||++|.++++++..+|+++|+++++.+.+|+.|+|+||+||+|.|++.|+++||..+..++|||+|||+|||++|+++
T Consensus 298 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~l 377 (621)
T CHL00094 298 AKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVL 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEecc---CceEEEEEeccCcCcCChh
Q psy7891 420 STGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYV---GDFNFNVSYASEIEHLNPE 496 (929)
Q Consensus 420 s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~---~~~~i~i~~g~~~~~~~~~ 496 (929)
++. ++++.+.|++||+||+++. +| .+.+|||+|++||++++.+|++.. ..+.|.||+| +.....
T Consensus 378 s~~--~~~~~~~d~~~~~lgi~~~----~~----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~g-e~~~~~-- 444 (621)
T CHL00094 378 AGE--VKDILLLDVTPLSLGVETL----GG----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQG-ERELAK-- 444 (621)
T ss_pred cCC--ccceeeeeeeceeeeeecc----CC----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEee-ccccCC--
Confidence 874 6789999999999999876 22 377999999999999999998753 3589999999 765332
Q ss_pred hhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCC
Q psy7891 497 QIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRS 576 (929)
Q Consensus 497 ~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 576 (929)
++. .|+.|.|.|+++.+.+. +.|+|+|++|.||+|+|++.+. .+.
T Consensus 445 ~n~-----~lg~~~i~~~~~~~~g~-------~~i~v~f~id~~Gil~v~~~~~---------~t~-------------- 489 (621)
T CHL00094 445 DNK-----SLGTFRLDGIPPAPRGV-------PQIEVTFDIDANGILSVTAKDK---------GTG-------------- 489 (621)
T ss_pred CCC-----EEEEEEEeCCCCCCCCC-------CcEEEEEEECCCCeEEEEEeec---------cCC--------------
Confidence 333 46677888998765443 5799999999999999998641 000
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHH
Q psy7891 577 KTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQV 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei 656 (929)
+.. .+.+. ...+|+.+++
T Consensus 490 ------------------------------------------------------~~~----~~~i~----~~~~ls~~~i 507 (621)
T CHL00094 490 ------------------------------------------------------KEQ----SITIQ----GASTLPKDEV 507 (621)
T ss_pred ------------------------------------------------------cee----eeeec----cchhccHHHH
Confidence 000 01111 2346999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHH
Q psy7891 657 EKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLEN 736 (929)
Q Consensus 657 ~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~ 736 (929)
+++++++.+|..+|+.++++.+++|.||+|||.+|++|+ ++..++++++|++|.+.++++++|||++ ..++|++
T Consensus 508 ~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~ 581 (621)
T CHL00094 508 ERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKDKISEEKKEKIENLIKKLRQALQND----NYESIKS 581 (621)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 999999999999999999999999999999999999995 3888999999999999999999999965 3579999
Q ss_pred HHHHHHhchhhHHHHHHh
Q psy7891 737 KLNEINSLVVPIWERHRE 754 (929)
Q Consensus 737 kl~eL~~~~~pi~~R~~e 754 (929)
++++|+++++++..+++.
T Consensus 582 ~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 582 LLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999976544
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-91 Score=787.93 Aligned_cols=605 Identities=30% Similarity=0.458 Sum_probs=546.0
Q ss_pred ccCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 22 ~~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
...+.++|||||||++||+++..| .++++.|.+|.|.+||+|+|.+.++++|.+|..+..++|.|+++++||++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~-~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSG-KVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCC-cceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 345789999999999999999977 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCc-eeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDN-ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~-~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al 180 (929)
|+.++..+++|||......+....+.....++ +.|+|+++.+|+|.+++..++.++|..+.++|+|||+||++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 99999999999997764444445555544443 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|+.+|||+++++|+||+||||+|++.+.. .. ..+|||+|+||||||++++.+. .| .+.|+++
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~---~~-~~~VlI~DlGggtfdvs~l~i~------gG------~~~vkat 226 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKV---LG-ERNVLIFDLGGGTFDVSVLSLE------GG------IFEVKAT 226 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccc---cc-eeeEEEEEcCCCceeeeeEEec------cc------hhhhhhh
Confidence 9999999999999999999999999977652 23 7899999999999999999986 23 7899999
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHH
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRA 340 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ 340 (929)
.+|.++||.+||+.|++|+..+|.. +++.|+..|+|+++||+.+||++|+.||....+.+.|++|+++.||...|||.
T Consensus 227 ~gd~~lGGedf~~~l~~h~~~ef~~--k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itra 304 (620)
T KOG0101|consen 227 AGDTHLGGEDFDNKLVNHFAAEFKR--KAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRA 304 (620)
T ss_pred cccccccchhhhHHHHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehh
Confidence 9999999999999999999999999 55579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhh
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+||.+|.+++.++..++..+|++++++..+|+.|+||||++|+|.+|..++++|+ +.+..++||||+||+|||++||.+
T Consensus 305 rfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~ 384 (620)
T KOG0101|consen 305 RFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAIL 384 (620)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999998 889999999999999999999999
Q ss_pred cCC--cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCC
Q psy7891 420 STG--FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLN 494 (929)
Q Consensus 420 s~~--f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~ 494 (929)
++. -.+.++.+.|+.|.++||+.. ++ .+.++|++++.+|++++.+|+++.++ +.|.||+| ++....
T Consensus 385 ~g~~~~~~~~l~lid~~pl~~gve~a-----~~---~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEg-er~~~k 455 (620)
T KOG0101|consen 385 SGDKSLNIQDLLLIDVAPLSLGVETA-----GG---VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEG-ERAMTK 455 (620)
T ss_pred cCCccccccceeeeeccccccccccc-----CC---cceeeeecccccceeeeeeeeeecCCCCceeEEEEec-cccccc
Confidence 874 235789999999999999876 33 38899999999999999999988654 89999999 865333
Q ss_pred hhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCcccccccccccccc
Q psy7891 495 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 574 (929)
Q Consensus 495 ~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 574 (929)
++..+ +.|.+.||+++++++ +.|+++|.+|.+|+|.|++++. +|+.
T Consensus 456 --dn~~l-----g~feL~gippaprgv-------p~IevtfdiD~ngiL~Vta~d~---------stgK----------- 501 (620)
T KOG0101|consen 456 --DNNLL-----GKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVTAVDK---------STGK----------- 501 (620)
T ss_pred --ccccc-----ceeeecCCCccccCC-------cceeEEEecCCCcEEEEeeccc---------cCCc-----------
Confidence 55555 456889999998887 7999999999999999999852 2110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHH
Q psy7891 575 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 654 (929)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ 654 (929)
..+ ++ ..++...||.+
T Consensus 502 -------------------------------------------------------~~~--------i~-i~n~~grls~~ 517 (620)
T KOG0101|consen 502 -------------------------------------------------------ENK--------IT-ITNDKGRLSKE 517 (620)
T ss_pred -------------------------------------------------------cce--------EE-Eecccceeehh
Confidence 001 11 44567789999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 655 ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+|++|....+.+..+|...+.+..++|.||+|+|+++..++++. +.++++++.++..+|.++..||+- +..+.+++|
T Consensus 518 ~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~--~~i~~~~~~~~~~~~~~~i~wl~~-~~~~~~~e~ 594 (620)
T KOG0101|consen 518 EIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK--GKINEEDKQKILDKCNEVINWLDK-NQLAEKEEF 594 (620)
T ss_pred hhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc--cccChhhhhhHHHHHHHHHHHhhh-cccccccHH
Confidence 99999999999999999999999999999999999999997544 899999999999999999999985 456679999
Q ss_pred HHHHHHHHhchhhHHHHHHhh
Q psy7891 735 ENKLNEINSLVVPIWERHREH 755 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~~e~ 755 (929)
++|.++|+..|.||+.+++..
T Consensus 595 e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 595 EHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999998765
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-88 Score=807.40 Aligned_cols=577 Identities=24% Similarity=0.344 Sum_probs=505.7
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec-CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+ ++++||..|..++.++|.++++++|||||+.+.|..
T Consensus 1 ~iGIDlGTtns~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSG-VPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK- 78 (599)
T ss_pred CEEEEEccccEEEEEEECC-EEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh-
Confidence 5899999999999999998 7789999999999999999975 489999999999999999999999999999987743
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
. .+.+||..... .++.+.+.+.++ .++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 -~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 -T-FSILPYRFVDG--PGEMVRLRTVQG-TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred -h-cccCCEEEEEc--CCCceEEEeCCC-EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 55677754322 245677776654 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
+|||++++||+||+|||++|++.+. . +.++|||||||||||+||+++. .| .++|++++|+..
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~-----~-~~~vlV~DlGgGT~DvSi~~~~------~~------~~~vla~~gd~~ 215 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA-----S-EGIYAVYDLGGGTFDVSILKLT------KG------VFEVLATGGDSA 215 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC-----C-CCEEEEEEcCCCeEEEEEEEEc------CC------eEEEEEEcCCCC
Confidence 9999999999999999999997653 2 6899999999999999999986 23 799999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEAL 345 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l 345 (929)
+||++||..|++||.+++.. +...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++
T Consensus 216 lGG~d~D~~l~~~l~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l 287 (599)
T TIGR01991 216 LGGDDFDHALAKWILKQLGI------SADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEAL 287 (599)
T ss_pred CCHHHHHHHHHHHHHHhhCC------CCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHH
Confidence 99999999999999976532 44568999999999999999999999988888875 78899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCccc
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKV 425 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f~~ 425 (929)
|+++++++..+|.++|+++++.+.+|+.|+||||+||+|+|+++|+++||..+..++|||+|||+|||++|+++++.++.
T Consensus 288 ~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~ 367 (599)
T TIGR01991 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIG 367 (599)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999878889999999999999999999999888
Q ss_pred ceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcccc
Q psy7891 426 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLG 502 (929)
Q Consensus 426 k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g 502 (929)
+++.+.|++||+||+++. +| .+.+||++|+++|++++..|++..++ +.|.||+| +..... +|.
T Consensus 368 ~~~~l~dv~p~slgi~~~----~g----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qG-e~~~~~--~n~--- 433 (599)
T TIGR01991 368 NDLLLLDVTPLSLGIETM----GG----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQG-ERELVE--DCR--- 433 (599)
T ss_pred CceEEEEeeeeeeEEEec----CC----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEee-cccccc--cCc---
Confidence 999999999999999986 23 27799999999999999999876443 88999999 765332 343
Q ss_pred ceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCC
Q psy7891 503 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 582 (929)
Q Consensus 503 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 582 (929)
.|+.+.|.|+++++.+. .+|+|+|++|.||+|+|++.+. .+.
T Consensus 434 --~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~V~a~~~---------~t~-------------------- 475 (599)
T TIGR01991 434 --SLARFELRGIPPMVAGA-------ARIRVTFQVDADGLLTVSAQEQ---------STG-------------------- 475 (599)
T ss_pred --eEEEEEEcCCCCCCCCC-------CcEEEEEEECCCCeEEEEEEEC---------CCC--------------------
Confidence 46677888999875544 6899999999999999998631 100
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHH
Q psy7891 583 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662 (929)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~ 662 (929)
++.. +.+. ....|+.++++++.+.
T Consensus 476 ------------------------------------------------~~~~----~~i~----~~~~l~~~~i~~~~~~ 499 (599)
T TIGR01991 476 ------------------------------------------------VEQS----IQVK----PSYGLSDEEIERMLKD 499 (599)
T ss_pred ------------------------------------------------cEEE----Eecc----cccCCCHHHHHHHHHH
Confidence 0001 1111 1235999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHH
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEIN 742 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~ 742 (929)
+.++..+|+.++++.+++|.+|+|+|.++..+. ++..++++++|+++...+++.++||+++ +...+++++++|+
T Consensus 500 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~ 573 (599)
T TIGR01991 500 SFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALE 573 (599)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 3556899999999999999999999854 4679999999999
Q ss_pred hchhhHHH
Q psy7891 743 SLVVPIWE 750 (929)
Q Consensus 743 ~~~~pi~~ 750 (929)
+++.++..
T Consensus 574 ~~~~~~~~ 581 (599)
T TIGR01991 574 EATDNFAA 581 (599)
T ss_pred HHHHHHHH
Confidence 99988775
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-88 Score=816.92 Aligned_cols=595 Identities=34% Similarity=0.538 Sum_probs=512.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHHH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVVQ 106 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v~ 106 (929)
||||||||+||+||++.+| .++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~-~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNG-KPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETT-EEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEec-cccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 7999999999999999988 889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 107 LFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 107 ~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
.+.+.+||......++...+.+...+ ...++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999998765543433334444333 35899999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
+|||++++||+||+|||++|++.+.. . +.++|||||||||+|+|++++. .| .++++++.++..
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~-~~~vlv~D~Gggt~dvs~~~~~------~~------~~~v~~~~~~~~ 222 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----K-GKTVLVVDFGGGTFDVSVVEFS------NG------QFEVLATAGDNN 222 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEEESSEEEEEEEEEE------TT------EEEEEEEEEETT
T ss_pred ccccccceeecccccccccccccccc----c-ccceeccccccceEeeeehhcc------cc------cccccccccccc
Confidence 99999999999999999999987655 2 7899999999999999999987 24 799999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC--CCceeEEEeeccc-CcceEEEEeHHHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--NNEHFAQIEGLID-EIDFKLLVTRAEF 342 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~--~~~~~v~ie~l~~-~~d~~~~itR~ef 342 (929)
+||++||.+|++|+.++|..++ +.++..+++++.+|+.+||++|+.||. +.+..+.++++.+ |.|+.+.|||++|
T Consensus 223 lGG~~~D~~l~~~~~~~~~~~~--~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~f 300 (602)
T PF00012_consen 223 LGGRDFDEALAEYLLEKFKKKY--KIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEF 300 (602)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH--SS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred cccceecceeeccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 9999999999999999999844 458888999999999999999999999 6777788888887 8999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
+++|.++++++..+|+++|+.+++...+|+.|+||||+||+|+||+.|++.||..+..++|||+|||+|||++|+.+++.
T Consensus 301 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~ 380 (602)
T PF00012_consen 301 EELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGS 380 (602)
T ss_dssp HHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTS
T ss_pred cccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhhc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIA 499 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~ 499 (929)
|+++++.+.|++||+|||.+. ++. +.+++++|+++|..++..|.+..+ +|.|.|||| +....+ ++
T Consensus 381 ~~~~~~~~~d~~~~~~~i~~~----~~~----~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g-~~~~~~--~~- 448 (602)
T PF00012_consen 381 FRVKDIKIIDVTPFSIGIEVS----NGK----FSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEG-ESSSFE--DN- 448 (602)
T ss_dssp CSSTSSCESEBESSEEEEEET----TTE----EEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG--GS-
T ss_pred ccccccccccccccccccccc----ccc----cccccccccccccccccccchhccccccccceeeec-cccccc--cc-
Confidence 999999999999999999887 232 678999999999998888876533 499999999 654332 33
Q ss_pred cccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCC
Q psy7891 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 579 (929)
Q Consensus 500 ~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 579 (929)
..|+++.|.++++.+.+. +.|+|+|++|.+|+|+|.++++..+.
T Consensus 449 ----~~ig~~~i~~i~~~~~g~-------~~i~v~f~ld~~Gil~V~~~~~~~~~------------------------- 492 (602)
T PF00012_consen 449 ----KKIGSYTISGIPPAPKGK-------PKIKVTFELDENGILSVEAAEVETGK------------------------- 492 (602)
T ss_dssp ----EEEEEEEEES-SSSSTTS-------SEEEEEEEEETTSEEEEEEEETTTTE-------------------------
T ss_pred ----cccccccccccccccccc-------cceeeEEeeeeeeehhhhhccccccc-------------------------
Confidence 456777888888765443 68999999999999999988521000
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHH
Q psy7891 580 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 659 (929)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~ 659 (929)
... +.+ . ....++.++++++
T Consensus 493 ----------------------------------------------------~~~----~~v---~-~~~~~~~~~~~~~ 512 (602)
T PF00012_consen 493 ----------------------------------------------------EEE----VTV---K-KKETLSKEEIEEL 512 (602)
T ss_dssp ----------------------------------------------------EEE----EEE---E-SSSSSCHHHHHHH
T ss_pred ----------------------------------------------------ccc----ccc---c-ccccccccccccc
Confidence 000 000 1 1123889999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy7891 660 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 739 (929)
Q Consensus 660 ~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~ 739 (929)
+++++++...|+.++++.+++|+||+|+|++|+.|++. .++++++++ .++++++.+||+++.++++.++|++|++
T Consensus 513 ~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~ 587 (602)
T PF00012_consen 513 KKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLE 587 (602)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999643 667777777 8899999999999888899999999999
Q ss_pred HHHhchhhHHHHHHh
Q psy7891 740 EINSLVVPIWERHRE 754 (929)
Q Consensus 740 eL~~~~~pi~~R~~e 754 (929)
+|+++.+||..|+++
T Consensus 588 ~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 588 ELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999863
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-87 Score=799.10 Aligned_cols=578 Identities=23% Similarity=0.343 Sum_probs=502.5
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
..+||||||||||+||++.+| .++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.+++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSG-QAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECC-EEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 368999999999999999999 67899999999999999999888899999999999999999999999999999876
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.....+||...... .|.+.+.+.++ .++|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||
T Consensus 96 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~-~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 96 IQQRYPHLPYQFVASE--NGMPLIRTAQG-LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhhcCCeEEEecC--CCceEEEecCC-eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 3444566777433322 45566666553 79999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.+. . ++++||||+||||||+||+++. .| .++|++++||.
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~-----~-~~~vlV~DlGGGT~DvSv~~~~------~~------~~evlat~gd~ 234 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG-----Q-EGVIAVYDLGGGTFDISILRLS------KG------VFEVLATGGDS 234 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC-----C-CCEEEEEECCCCeEEEEEEEee------CC------EEEEEEecCCC
Confidence 99999999999999999999997643 2 6899999999999999999986 23 79999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 344 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~ 344 (929)
++||.+||.+|++|+.++|.. +...+++++.+|+.+||++|+.||.+..+.+.+..+ ...|||++|++
T Consensus 235 ~lGG~d~D~~l~~~~~~~~~~------~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~ 302 (616)
T PRK05183 235 ALGGDDFDHLLADWILEQAGL------SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNA 302 (616)
T ss_pred CcCHHHHHHHHHHHHHHHcCC------CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHH
Confidence 999999999999999998754 334688999999999999999999999888887532 23599999999
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCcc
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFK 424 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f~ 424 (929)
+|+++++++..+|+++|+++++.+.+|+.|+||||+||+|+|++.|+++||..+..++|||+|||+|||++|+++++.+.
T Consensus 303 l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~ 382 (616)
T PRK05183 303 LIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP 382 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999977778999999999999999999999888
Q ss_pred cceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhhccc
Q psy7891 425 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIAML 501 (929)
Q Consensus 425 ~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~~~ 501 (929)
++++.+.|++||+|||++. +| .+.+|||+|++||++++..|++..+ .+.|.||+| +..... ++.
T Consensus 383 ~~~~~l~dv~p~slgi~~~----~g----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qG-e~~~~~--~n~-- 449 (616)
T PRK05183 383 DSDMLLLDVIPLSLGLETM----GG----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQG-ERELVA--DCR-- 449 (616)
T ss_pred cCceEEEeeccccccceec----CC----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecc-cccccc--ccc--
Confidence 8899999999999999876 22 2778999999999999999987544 389999999 765432 333
Q ss_pred cceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCC
Q psy7891 502 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDEN 581 (929)
Q Consensus 502 g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 581 (929)
.|+++.|.|+++.+++. ..|+|+|++|.||+|+|++.+. .+.
T Consensus 450 ---~lg~~~i~~i~~~~~g~-------~~i~v~f~~d~~Gil~V~a~~~---------~~~------------------- 491 (616)
T PRK05183 450 ---SLARFELRGIPPMAAGA-------ARIRVTFQVDADGLLSVTAMEK---------STG------------------- 491 (616)
T ss_pred ---EEEEEEeCCCCCCCCCC-------ccEEEEEEECCCCeEEEEEEEc---------CCC-------------------
Confidence 46777899999875543 5899999999999999997641 100
Q ss_pred CCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHH
Q psy7891 582 EKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLS 661 (929)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~ 661 (929)
+... +.+. ....|+.++++++++
T Consensus 492 -------------------------------------------------~~~~----~~i~----~~~~ls~~~i~~~~~ 514 (616)
T PRK05183 492 -------------------------------------------------VEAS----IQVK----PSYGLTDDEIARMLK 514 (616)
T ss_pred -------------------------------------------------cEEE----eccc----ccccCCHHHHHHHHH
Confidence 0000 1111 113599999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHH
Q psy7891 662 KLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEI 741 (929)
Q Consensus 662 ~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL 741 (929)
.+.++..+|+..+++.+++|++|+|+|.++..+.+ ....+++++|+.+...+++.++||..+ +.+.|++++++|
T Consensus 515 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l 588 (616)
T PRK05183 515 DSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKAL 588 (616)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence 99999999999999999999999999999999952 346789999999999999999999742 678999999999
Q ss_pred HhchhhHHHHH
Q psy7891 742 NSLVVPIWERH 752 (929)
Q Consensus 742 ~~~~~pi~~R~ 752 (929)
++++.++..+.
T Consensus 589 ~~~~~~~~~~~ 599 (616)
T PRK05183 589 DKATQEFAARR 599 (616)
T ss_pred HHHHHHHHHHH
Confidence 99999988643
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-85 Score=705.67 Aligned_cols=593 Identities=27% Similarity=0.401 Sum_probs=530.2
Q ss_pred cCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEE-ecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~-~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
..-.|+|||+||||||++++.++ ...++.|.+|.|.+||+|+| .++++++|..|+.++..||.|+|+.-|||||+.|+
T Consensus 25 ~~~~vigidlgttnS~va~meg~-~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGK-KPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCC-CceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 44679999999999999999988 55699999999999999999 67799999999999999999999999999999999
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
||.++.+.+..||..+-. .+|-..+.. .+..|+|.++.+++|++++..|+.+++..+..+|+|||+||++.||+++.
T Consensus 104 d~evq~~~k~vpyKiVk~--~ngdaw~e~-~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKA--SNGDAWVEA-RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred CHHHHHHHHhCCcceEEc--cCCcEEEEe-CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 999999999999977763 356566666 55899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|.++||+++++.||||+|||++|++.+.. ...++|||+||||||++|..+. .| .|+|.++.
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k~------~g~iaV~dLgggtfdisilei~------~g------vfevksTn 242 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKKE------DGVIAVFDLGGGTFDISILEIE------DG------VFEVKSTN 242 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhcccccC------CCceEEEEcCCceeeeeeehhc------cc------eeEEEecc
Confidence 999999999999999999999999998754 5889999999999999999976 24 89999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEE
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLV 337 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~i 337 (929)
||.++||.+||..+++|+...|.. ..+.|+..+.+++.||+.++||+|..||....+.+.++.+..+ ..+++++
T Consensus 243 gdtflggedfd~~~~~~~v~~fk~--~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~ 320 (640)
T KOG0102|consen 243 GDTHLGGEDFDNALVRFIVSEFKK--EEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIEL 320 (640)
T ss_pred CccccChhHHHHHHHHHHHHhhhc--ccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEee
Confidence 999999999999999999999988 6678999999999999999999999999999999999887766 7789999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa 417 (929)
||.+||+++.++++|.+.|+.++|++|++..+||+.|+|+||++|+|.|++.+.++||+..+..+||||+||.|||+++.
T Consensus 321 tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqgg 400 (640)
T KOG0102|consen 321 TRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGG 400 (640)
T ss_pred cHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCC
Q psy7891 418 DLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLN 494 (929)
Q Consensus 418 ~~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~ 494 (929)
.+++. |+++.+.|++|+++||+.- |++ +..|+++++.||++++..|.+..+ .+.|.|++| ++....
T Consensus 401 vl~ge--VkdvlLLdVtpLsLgietl-----ggv---ft~Li~rnttIptkksqvfstaadgqt~V~ikv~qg-ere~~~ 469 (640)
T KOG0102|consen 401 VLSGE--VKDVLLLDVTPLSLGIETL-----GGV---FTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQG-EREMVN 469 (640)
T ss_pred hhhcc--ccceeeeecchHHHHHHhh-----hhh---heecccCCcccCchhhhheeecccCCceEEEEeeec-hhhhhc
Confidence 99987 8999999999999999876 433 788999999999999999988644 389999999 887655
Q ss_pred hhhhccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCcccccccccccccc
Q psy7891 495 PEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFS 574 (929)
Q Consensus 495 ~~~~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~ 574 (929)
+|.++|+ |.+.||+++|+++ ++|.|+|.+|.|||++|++.+ +.+.
T Consensus 470 --dnk~lG~-----f~l~gipp~pRgv-------pqieVtfDIdanGI~~vsA~d---------k~t~------------ 514 (640)
T KOG0102|consen 470 --DNKLLGS-----FILQGIPPAPRGV-------PQIEVTFDIDANGIGTVSAKD---------KGTG------------ 514 (640)
T ss_pred --cCcccce-----eeecccCCCCCCC-------CceeEEEeecCCceeeeehhh---------cccC------------
Confidence 7777775 4889999999998 799999999999999999874 1110
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHH
Q psy7891 575 RSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEK 654 (929)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ 654 (929)
|.+. +. ......||++
T Consensus 515 ------------------------------------------------------K~qs------i~----i~~sggLs~~ 530 (640)
T KOG0102|consen 515 ------------------------------------------------------KSQS------IT----IASSGGLSKD 530 (640)
T ss_pred ------------------------------------------------------Cccc------eE----EeecCCCCHH
Confidence 0011 11 1133569999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHH
Q psy7891 655 QVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734 (929)
Q Consensus 655 ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~ 734 (929)
+++.|.+..+.+...|+.++++.+..|..++++|+....+ .+|.+..+.++.++|+..+....+.+-.- ...+.+++
T Consensus 531 ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~--~~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~ 607 (640)
T KOG0102|consen 531 EIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL--KEFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEI 607 (640)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh--hhhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhH
Confidence 9999999999999999999999999999999999999988 57888899999999999999999888521 22334777
Q ss_pred HHHHHHHHhchhhHHHHH
Q psy7891 735 ENKLNEINSLVVPIWERH 752 (929)
Q Consensus 735 ~~kl~eL~~~~~pi~~R~ 752 (929)
..+...|+....|++.-+
T Consensus 608 k~~~~~l~q~~lkl~es~ 625 (640)
T KOG0102|consen 608 KKAMSALQQASLKLFESA 625 (640)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 777777777777766533
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-82 Score=746.44 Aligned_cols=546 Identities=21% Similarity=0.345 Sum_probs=460.0
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC---
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS--- 102 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d--- 102 (929)
.+||||||||||+||++.+| .++++.|..|+|.+||+|+|.++++++|..| +++++|||||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~-~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNR-KVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCC-eeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 58999999999999999887 8899999999999999999988889999987 799999999999876
Q ss_pred -HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 103 -PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 103 -~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+.+....+++ ... ..+.+.+.+++ ..|+|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 89 ~~~~~~~~k~~-----~~~-~~~~~~~~~~~-~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 89 TPALFSLVKDY-----LDV-NSSELKLNFAN-KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred chhhHhhhhhe-----eec-CCCeeEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 2222111111 111 12334555554 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+||++|||++++||+||+|||++|++.... ..++||||+||||||+||+++. .| .++|++++
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~~------~~~vlV~DlGGGT~DvSi~~~~------~~------~~~V~at~ 223 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ------KGCYLVYDLGGGTFDVSILNIQ------EG------IFQVIATN 223 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccCC------CCEEEEEECCCCcEEEEEEEEe------CC------eEEEEEEc
Confidence 999999999999999999999999976532 5789999999999999999986 23 79999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHH
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 341 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~e 341 (929)
||.++||++||.+|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..++|||++
T Consensus 224 gd~~lGG~d~D~~l~~~~~~~~~~--------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~e 281 (595)
T PRK01433 224 GDNMLGGNDIDVVITQYLCNKFDL--------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQT 281 (595)
T ss_pred CCcccChHHHHHHHHHHHHHhcCC--------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHH
Confidence 999999999999999999988743 12222 23459999999998875211 278999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
||++|+++++++..+|+++|++++ ..+|+.|+||||+||+|+||+.|.++||.++..++|||+|||+|||++|+++++
T Consensus 282 fe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 282 LEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 999999999999999999999998 578999999999999999999999999988888999999999999999999987
Q ss_pred CcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhh
Q psy7891 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQI 498 (929)
Q Consensus 422 ~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~ 498 (929)
.+ +++.+.|++||+|||++. ++ .+.+||++|+++|++++..|++..+ .+.|.||+| +..... ++
T Consensus 360 ~~--~~~~l~Dv~p~slgi~~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qG-e~~~~~--~n 426 (595)
T PRK01433 360 PH--TNSLLIDVVPLSLGMELY-----GG---IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQG-EREMAA--DC 426 (595)
T ss_pred Cc--cceEEEEecccceEEEec-----CC---EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEec-cccccC--CC
Confidence 53 578999999999999987 22 2779999999999999999987644 389999999 876443 44
Q ss_pred ccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCC
Q psy7891 499 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 578 (929)
Q Consensus 499 ~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 578 (929)
. .|+.|.|.|+++++++. .+|+|+|++|.||+|+|++.+. .|.
T Consensus 427 ~-----~lg~~~l~~i~~~~~g~-------~~i~vtf~id~~Gil~V~a~~~---------~t~---------------- 469 (595)
T PRK01433 427 R-----SLARFELKGLPPMKAGS-------IRAEVTFAIDADGILSVSAYEK---------ISN---------------- 469 (595)
T ss_pred c-----EEEEEEEcCCCCCCCCC-------ccEEEEEEECCCCcEEEEEEEc---------CCC----------------
Confidence 3 46667889999876554 6899999999999999998741 110
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHH
Q psy7891 579 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 658 (929)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~ 658 (929)
+... +.+. ....|+++++++
T Consensus 470 ----------------------------------------------------~~~~----~~i~----~~~~ls~~ei~~ 489 (595)
T PRK01433 470 ----------------------------------------------------TSHA----IEVK----PNHGIDKTEIDI 489 (595)
T ss_pred ----------------------------------------------------cEEE----EEec----CCCCCCHHHHHH
Confidence 0000 1111 123499999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy7891 659 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 738 (929)
Q Consensus 659 ~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl 738 (929)
+++.+.++...|..++++.+++|.+|+++|.++..++ ++...+++++|+.+...+++.++||..+ +...+.+++
T Consensus 490 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~ 563 (595)
T PRK01433 490 MLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA--ELTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSI 563 (595)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 9999999999999999999999999999999999994 3666789999999999999999999732 566788888
Q ss_pred HHHHhchhh
Q psy7891 739 NEINSLVVP 747 (929)
Q Consensus 739 ~eL~~~~~p 747 (929)
++|+....+
T Consensus 564 ~~~~~~~~~ 572 (595)
T PRK01433 564 KEFKSKIKK 572 (595)
T ss_pred HHHHHHHHH
Confidence 888877777
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-81 Score=731.84 Aligned_cols=571 Identities=30% Similarity=0.415 Sum_probs=507.0
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-ceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
.+.+||||||||||+||++++|..+.++.|..|.|.+||+|+|... ++++|..|+.++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3568999999999999999988456799999999999999999755 69999999999999999999999999998611
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLK 182 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~ 182 (929)
.....+.+++ +.|+|+++++++|.++++.++.+++..+.++|||||+||++.||+++++
T Consensus 83 --------------------~~~~~~~~~~-~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~ 141 (579)
T COG0443 83 --------------------GLKISVEVDG-KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKD 141 (579)
T ss_pred --------------------CCcceeeeCC-eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHH
Confidence 0113344444 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 183 AGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 183 Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
|+++|||++++|++||+|||++|++.... +.+|||||+||||||+||+++. .| .++|++++|
T Consensus 142 A~~iaGl~vlrlinEPtAAAlayg~~~~~------~~~vlV~DlGGGTfDvSll~~~------~g------~~ev~at~g 203 (579)
T COG0443 142 AARIAGLNVLRLINEPTAAALAYGLDKGK------EKTVLVYDLGGGTFDVSLLEIG------DG------VFEVLATGG 203 (579)
T ss_pred HHHHcCCCeEEEecchHHHHHHhHhccCC------CcEEEEEEcCCCCEEEEEEEEc------CC------EEEEeecCC
Confidence 99999999999999999999999998762 7999999999999999999986 24 899999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF 342 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef 342 (929)
|.+|||++||.+|.+|+..+|.. +.+.|+..+++++.||+.+||++|+.||+..++.+.++.+..+.++...|||++|
T Consensus 204 d~~LGGddfD~~l~~~~~~~f~~--~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~ 281 (579)
T COG0443 204 DNHLGGDDFDNALIDYLVMEFKG--KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKF 281 (579)
T ss_pred CcccCchhHHHHHHHHHHHHhhc--cCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHH
Confidence 99999999999999999999998 4457999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCC
Q psy7891 343 EALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTG 422 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~ 422 (929)
|.++.+++.++..++.++|.++++...+|+.|+|+||++|||.|++.|+++||+.+.+++||||+||.|||++|+.+++.
T Consensus 282 E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~ 361 (579)
T COG0443 282 EELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGE 361 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhc
Q psy7891 423 FKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIA 499 (929)
Q Consensus 423 f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~ 499 (929)
.. ++.+.|++|+++|+++.+ + .+..++++++.+|.++...|.+..+. +.+.+++| ++.... ++
T Consensus 362 ~~--d~ll~Dv~plslgie~~~-----~---~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qg-e~~~~~--~~- 427 (579)
T COG0443 362 VP--DVLLLDVIPLSLGIETLG-----G---VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQG-EREMAA--DN- 427 (579)
T ss_pred cc--CceEEeeeeeccccccCc-----c---hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEec-chhhcc--cC-
Confidence 55 889999999999998872 2 26789999999999999999877443 78999999 776443 33
Q ss_pred cccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCC
Q psy7891 500 MLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTD 579 (929)
Q Consensus 500 ~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 579 (929)
..++.|.+.|+++++++. +.|.|+|.+|.||++.|++.+. .+.
T Consensus 428 ----~~lg~f~l~~i~~~~~g~-------~~i~v~f~iD~~gi~~v~a~~~---------~~~----------------- 470 (579)
T COG0443 428 ----KSLGRFELDGIPPAPRGV-------PQIEVTFDIDANGILNVTAKDL---------GTG----------------- 470 (579)
T ss_pred ----ceeEEEECCCCCCCCCCC-------CceEEEeccCCCcceEeeeecc---------cCC-----------------
Confidence 345667899999998877 5799999999999999998531 100
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHH
Q psy7891 580 ENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKS 659 (929)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~ 659 (929)
|... +. .. ....|+.++++.+
T Consensus 471 ---------------------------------------------------k~~~----i~---i~-~~~~ls~~~i~~~ 491 (579)
T COG0443 471 ---------------------------------------------------KEQS----IT---IK-ASSGLSDEEIERM 491 (579)
T ss_pred ---------------------------------------------------ceEE----EE---Ee-cCCCCCHHHHHHH
Confidence 0000 11 11 2233999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHH
Q psy7891 660 LSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLN 739 (929)
Q Consensus 660 ~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~ 739 (929)
.+....+...|+..++..+.+|.+++++|.++..|.+ .. .+++++++.+...+.++++||+. + .+++..+.+
T Consensus 492 ~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~ 563 (579)
T COG0443 492 VEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV-KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIE 563 (579)
T ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc-cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHH
Confidence 9999999999999999999999999999999999963 22 89999999999999999999996 2 889999999
Q ss_pred HHHhchhhHHHHHHh
Q psy7891 740 EINSLVVPIWERHRE 754 (929)
Q Consensus 740 eL~~~~~pi~~R~~e 754 (929)
+|+....++..++++
T Consensus 564 ~l~~~~~~~~~~~~~ 578 (579)
T COG0443 564 ELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998887653
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=490.94 Aligned_cols=346 Identities=19% Similarity=0.204 Sum_probs=290.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe---------------------------------------
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH--------------------------------------- 67 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~--------------------------------------- 67 (929)
++|||||||||+||++.+| .++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~-~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDG-KPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCC-ceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 6899999999999999988 678999999999999999993
Q ss_pred --cCceeecHHHHHhhhhCCCCh--HhhhHHhcCCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHH
Q psy7891 68 --KGERTFGEDAQIIGTRFPSNS--YGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143 (929)
Q Consensus 68 --~~~~~~G~~A~~~~~~~p~~t--~~~~K~llG~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a 143 (929)
++..++|..|......+|.++ +..+|++||...-. . +..+.++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~--------------------~---------~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK--------------------P---------QQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC--------------------c---------cceeCHHHHHH
Confidence 456789999999999999998 77999999975210 0 02234899999
Q ss_pred HHHHHHHHHHHhhcccccceEEEEecCCCC-----HHHHHH---HHHHHHHcCCcEEEEechhHHHHHHhcccccccCCC
Q psy7891 144 MLLHKAREYASVSAGQVINEAVIIVPGYFN-----QIERQS---MLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNE 215 (929)
Q Consensus 144 ~~L~~lk~~a~~~~~~~v~~~VItVPa~f~-----~~qR~a---l~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~ 215 (929)
++|++|++.++.++|.++.++|||||++|+ +.||++ |++||++|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 788876 7999999999999999999999999986432
Q ss_pred CCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHH-HHHHHHhhhh--cccCCC
Q psy7891 216 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR-DFLGKKFNEM--KKTTKD 292 (929)
Q Consensus 216 ~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~-~~l~~~f~~~--~~~~~d 292 (929)
. +.++|||||||||+|+||+++.... .+ ......+|++++| ..+||++||.+|+ +++...|... ++.+.+
T Consensus 207 ~-~~~vlV~D~GGGT~D~Svv~~~~~~---~~--~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~ 279 (450)
T PRK11678 207 E-EKRVLVVDIGGGTTDCSMLLMGPSW---RG--RADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIA 279 (450)
T ss_pred C-CCeEEEEEeCCCeEEEEEEEecCcc---cc--cCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCc
Confidence 2 7899999999999999999985110 00 1123578999998 5899999999998 6888888531 111110
Q ss_pred c-----------------------------------cCCHHHH------------HHHHHHHHHhhhhccCCCceeEEEe
Q psy7891 293 V-----------------------------------FENPRAV------------AKLFKEAGRLKNVLSANNEHFAQIE 325 (929)
Q Consensus 293 ~-----------------------------------~~~~~~~------------~kL~~~aek~K~~LS~~~~~~v~ie 325 (929)
+ ..+|+.+ .+|+.+||++|+.||.+.++.+.++
T Consensus 280 ~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~ 359 (450)
T PRK11678 280 LPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLD 359 (450)
T ss_pred CcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEec
Confidence 0 0134333 3788999999999999999999888
Q ss_pred ecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCch
Q psy7891 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTD 405 (929)
Q Consensus 326 ~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~d 405 (929)
.+. .++...|||++|+++|+++++++..+|+++|+++++. ++.|+||||+||+|.|++.|.+.||.......++.
T Consensus 360 ~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~ 434 (450)
T PRK11678 360 FIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDF 434 (450)
T ss_pred ccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCc
Confidence 664 4578999999999999999999999999999999975 47899999999999999999999996556678999
Q ss_pred HHHHhhHHHHHHhh
Q psy7891 406 EAAALGAVYKAADL 419 (929)
Q Consensus 406 eaVA~GAa~~aa~~ 419 (929)
++||.|+|++|..+
T Consensus 435 ~sVa~Gla~~a~~~ 448 (450)
T PRK11678 435 GSVTAGLARWAQVV 448 (450)
T ss_pred chHHHHHHHHHHhh
Confidence 99999999999754
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=346.84 Aligned_cols=307 Identities=19% Similarity=0.260 Sum_probs=238.2
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC--c-eeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
+||||||+|++|+....| .++. .||+|+|... . ..+|.+|..+..+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~-------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA-------------- 61 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE--------------
Confidence 899999999999886433 2332 5999999843 2 47999998876665544321
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
...+.++ .+...+++..+|+++.+.+..........+|||||++|++.||+++.+|+
T Consensus 62 ----------------------~~pi~~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ----------------------IRPLRDG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ----------------------EccCCCC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 0111111 33444566777888775553322223347999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
+.||++++.+++||+|||++|+.... . +..++|||+||||||+++++.. + + ...++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lVvDiGggttdvsvv~~g-------~-------~---~~~~~~ 175 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-----Q-PSGNMVVDIGGGTTDIAVLSLG-------G-------I---VTSSSI 175 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-----C-CCeEEEEEeCCCeEEEEEEEeC-------C-------E---EEeCCc
Confidence 99999999999999999999997532 2 6779999999999999999853 2 1 124567
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceEEEEe
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLVT 338 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~~~it 338 (929)
.+||.+||..|++++..+|.. .+. ...||++|+.++... ...+.+. .+..+.++.+.|+
T Consensus 176 ~lGG~did~~i~~~l~~~~~~------~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~ 240 (336)
T PRK13928 176 KVAGDKFDEAIIRYIRKKYKL------LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVT 240 (336)
T ss_pred CCHHHHHHHHHHHHHHHHhch------hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEEC
Confidence 999999999999999987743 111 256999999886431 1233332 2345667789999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcC--CCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQALKSSA--VPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L~~a~--~~~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
|++|++++.++++++..+|.++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+.++....||++|||+|||++
T Consensus 241 ~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~ 320 (336)
T PRK13928 241 SEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKM 320 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHH
Confidence 999999999999999999999999986 4456777 7999999999999999999999988888889999999999999
Q ss_pred HHhh
Q psy7891 416 AADL 419 (929)
Q Consensus 416 aa~~ 419 (929)
+..+
T Consensus 321 ~~~~ 324 (336)
T PRK13928 321 LENI 324 (336)
T ss_pred Hhch
Confidence 8764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=339.74 Aligned_cols=306 Identities=21% Similarity=0.294 Sum_probs=243.5
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-c--eeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
-.+||||||+|++| +.+|.+ ++.| .||+|+|+.. . .++|.+|..+..+.|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~--~~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~-------- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKG--IILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R-------- 64 (335)
T ss_pred CeEEEEcccccEEE--EECCCc--EEec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e--------
Confidence 36899999999974 556645 3555 3999999743 2 589999999888888765431 1
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccc--eEEEEecCCCCHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVIN--EAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~--~~VItVPa~f~~~qR~al 180 (929)
| +..+ .+.--++++++|++++..++..++..+. .+|||||++|++.||+++
T Consensus 65 ----------p----------------i~~G-~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ----------P----------------MKDG-VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ----------c----------------CCCC-ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 1 1111 1222378899999999998877776554 799999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|++.||++++.|++||+|||++|+.... . +..++|||+||||||++++.+. | + + .
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~-~~~~lvvDiG~gtt~v~vi~~~-------~-------~--~-~ 174 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD-----E-PVANVVVDIGGGTTEVAIISFG-------G-------V--V-S 174 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC-----C-CceEEEEEeCCCeEEEEEEEeC-------C-------E--E-E
Confidence 999999999999999999999999986532 2 6789999999999999999864 3 1 1 2
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceE
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFK 334 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~ 334 (929)
.++..+||++||..|+++|.+.|.. .+. ...||++|+.|+... ...+.+. ++..+....
T Consensus 175 ~~~~~~GG~~id~~l~~~l~~~~~~------~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~ 239 (335)
T PRK13929 175 CHSIRIGGDQLDEDIVSFVRKKYNL------LIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKT 239 (335)
T ss_pred ecCcCCHHHHHHHHHHHHHHHHhCc------CcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeE
Confidence 3456899999999999999876533 111 257999999998632 2223332 233455678
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhh
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 411 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~G 411 (929)
+.|+|++|+++|.+++.++...|.++|+.++.. .+.++ .|+|+||+|++|.++++|++.|+.++....||+++|++|
T Consensus 240 i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~G 319 (335)
T PRK13929 240 ITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIG 319 (335)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHH
Confidence 999999999999999999999999999998643 36677 699999999999999999999998888889999999999
Q ss_pred HHHHH
Q psy7891 412 AVYKA 416 (929)
Q Consensus 412 Aa~~a 416 (929)
|+..-
T Consensus 320 a~~~~ 324 (335)
T PRK13929 320 TGRSL 324 (335)
T ss_pred HHHHH
Confidence 98764
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=320.72 Aligned_cols=306 Identities=18% Similarity=0.274 Sum_probs=228.5
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-c--eeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.+||||||++++++.. |.+. ++ .+||+|+|... + .++|.+|..+..+.|.++..
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~------------- 63 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA------------- 63 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE-------------
Confidence 5899999999998543 4333 32 27999999643 2 48999999877665544321
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.+.+..+..... +.+..+|+++......... .-..+|||||++|++.||+++.+|
T Consensus 64 -----------------------~~pi~~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 64 -----------------------IRPMKDGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -----------------------EecCCCCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 111111211222 2334445554443322221 123899999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ...++
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lvvDiGggttdvs~v~~~-------~-------~---~~~~~ 175 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VYSKS 175 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc-----C-CCeEEEEEeCCCeEEEEEEecC-------C-------e---EeeCC
Confidence 999999999999999999999987542 2 5678999999999999999864 3 1 12345
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc----eeEEE--eecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQI--EGLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~v~i--e~l~~~~d~~~~i 337 (929)
..+||++||..|++++.++|.. .+. ...||++|+.++.... ..+.+ +.+..+.++.+.|
T Consensus 176 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (334)
T PRK13927 176 VRVGGDKFDEAIINYVRRNYNL------LIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITI 240 (334)
T ss_pred cCChHHHHHHHHHHHHHHHhCc------CcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEE
Confidence 6799999999999999876643 111 2468999998875432 22333 2344566678999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|++|++++.+.+.++..+|.++|+.++.. .+.++ .|+|+||+|++|.|+++|++.|+.++....||+++||+||++
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 999999999999999999999999988643 23344 599999999999999999999998888889999999999999
Q ss_pred HHHh
Q psy7891 415 KAAD 418 (929)
Q Consensus 415 ~aa~ 418 (929)
++..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 9865
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=317.58 Aligned_cols=306 Identities=19% Similarity=0.285 Sum_probs=226.2
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-----c--eeecHHHHHhhhhCCCChHhhhHHhcCCCC
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----E--RTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 100 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~t~~~~K~llG~~~ 100 (929)
+||||||+||++++...| + ++ ..||+|+|.++ . .++|.+|..+..+.|.+.- ++
T Consensus 5 ~giDlGt~~s~i~~~~~~--~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI------- 65 (333)
T ss_pred eEEecCcceEEEEECCCC--E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE-------
Confidence 899999999998885433 2 32 37999999633 3 6799999887655554431 11
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHH
Q psy7891 101 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSM 180 (929)
Q Consensus 101 ~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al 180 (929)
..+.++..... +.+..+++|+........+..-..+|||||++|+..||+++
T Consensus 66 ---------------------------~pi~~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 66 ---------------------------RPMKDGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ---------------------------ecCCCCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 11112222222 33344455554433222221223899999999999999999
Q ss_pred HHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 181 LKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 181 ~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
.+|++.||++++.+++||+|||++|+.... . +..++|||+||||||++++++. | + ..
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~-~~~~lVvDiG~gttdvs~v~~~-------~-------~---~~ 174 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-----E-PTGSMVVDIGGGTTEVAVISLG-------G-------I---VV 174 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-----C-CceEEEEEcCCCeEEEEEEEeC-------C-------E---Ee
Confidence 999999999999999999999999986432 2 6789999999999999999864 3 1 12
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc-----eeEEEee--cccCcce
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE-----HFAQIEG--LIDEIDF 333 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~-----~~v~ie~--l~~~~d~ 333 (929)
.++..+||++||+.|++++.++|.. ... +..||++|+.|+.... ..+.+.. ...+...
T Consensus 175 ~~~~~lGG~did~~l~~~l~~~~~~------~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T TIGR00904 175 SRSIRVGGDEFDEAIINYIRRTYNL------LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPR 239 (333)
T ss_pred cCCccchHHHHHHHHHHHHHHHhcc------cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCe
Confidence 3456899999999999999876632 111 3579999999875322 1222211 1223345
Q ss_pred EEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC-CCc-c-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHh
Q psy7891 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM-DVI-S-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAAL 410 (929)
Q Consensus 334 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~-~~I-~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~ 410 (929)
...|+|++|.+++.+.+.++...|.++|+.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.
T Consensus 240 ~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~ 319 (333)
T TIGR00904 240 TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAK 319 (333)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHH
Confidence 67899999999999999999999999999886432 244 3 69999999999999999999999888889999999999
Q ss_pred hHHHHHHh
Q psy7891 411 GAVYKAAD 418 (929)
Q Consensus 411 GAa~~aa~ 418 (929)
||++++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99998754
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=309.79 Aligned_cols=308 Identities=19% Similarity=0.267 Sum_probs=232.3
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec---CceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK---GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~---~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
-+||||||+++++++... ++ ++ .+||+|+|.. ...++|.+|.....+.|.+.-
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~-------------- 65 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GI-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE-------------- 65 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CE-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--------------
Confidence 399999999999988633 32 22 2599999964 236899999876654443321
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
+...+..+.... -+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|
T Consensus 66 ----------------------~~~pi~~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 66 ----------------------AIRPLKDGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred ----------------------EeecCCCCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 011111121122 245677777777655443344467899999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
++.+|++++.+++||+|||++|+..... +..++|||+||||||++++... + + + ..+.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~------~~~~lVvDiG~gttdvs~v~~g-------~-------~--~-~~~~ 179 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE------PVGNMVVDIGGGTTEVAVISLG-------G-------I--V-YSES 179 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC------CCceEEEEeCCCeEEEEEEEeC-------C-------E--E-eecC
Confidence 9999999999999999999999865322 4568999999999999999743 1 1 1 2456
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc----eeEEEe--ecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE----HFAQIE--GLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~----~~v~ie--~l~~~~d~~~~i 337 (929)
..+||.+||+.|++++.+++.- ++. ...||++|+.|+.... ..+.+. .+..+.+..+.|
T Consensus 180 ~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (335)
T PRK13930 180 IRVAGDEMDEAIVQYVRRKYNL------LIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEI 244 (335)
T ss_pred cCchhHHHHHHHHHHHHHHhCC------CCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEE
Confidence 7899999999999999887532 111 2478999999976432 123332 223445568899
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCccE-EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|++|++++.+.+.++.+.|.++|+.+... .+.++. |+|+||+|++|.++++|.+.|+.++....+|+++||+||++
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~ 324 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 999999999999999999999999987532 234454 99999999999999999999998888888999999999999
Q ss_pred HHHhh
Q psy7891 415 KAADL 419 (929)
Q Consensus 415 ~aa~~ 419 (929)
.+...
T Consensus 325 ~~~~~ 329 (335)
T PRK13930 325 ALENL 329 (335)
T ss_pred HHhCh
Confidence 98653
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=269.74 Aligned_cols=303 Identities=22% Similarity=0.328 Sum_probs=217.4
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC---ceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~---~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
-+||||||+|+.|+.-..| ++.++ ||+|+|+.. -..+|.+|..+..+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~~~~G----iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG----IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE----EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred ceEEecCcccEEEEECCCC----EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 5899999999987543333 45544 999999753 3568999987655544322
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.+...+.++ .+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 58 ---------------------~~~~Pl~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 58 ---------------------EVVRPLKDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ---------------------EEE-SEETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ---------------------EEEccccCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 122223333 2333456777888887777553223445799999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
+..||..-+.||.||.|||+..++.-.. +...||+|+||||||++++... | ++... .
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~~------~~g~miVDIG~GtTdiavislg-------g---------iv~s~-s 172 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIFE------PRGSMIVDIGGGTTDIAVISLG-------G---------IVASR-S 172 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TTS------SS-EEEEEE-SS-EEEEEEETT-------E---------EEEEE-E
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCCC------CCceEEEEECCCeEEEEEEECC-------C---------EEEEE-E
Confidence 9999999999999999999999876432 7889999999999999999742 2 22222 2
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC----ceeEEEe--ecccCcceEEEE
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN----EHFAQIE--GLIDEIDFKLLV 337 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~----~~~v~ie--~l~~~~d~~~~i 337 (929)
..+||++||+.|.+|+.++|.- .+. .+.||++|+.++.-. +..+.|. ++..+....+.|
T Consensus 173 i~~gG~~~DeaI~~~ir~~y~l------~Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i 237 (326)
T PF06723_consen 173 IRIGGDDIDEAIIRYIREKYNL------LIG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEI 237 (326)
T ss_dssp ES-SHHHHHHHHHHHHHHHHSE------E-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEE
T ss_pred EEecCcchhHHHHHHHHHhhCc------ccC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEE
Confidence 4799999999999999998853 111 246899999887542 2234443 456788889999
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCC---Cc--cEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMD---VI--SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~---~I--~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GA 412 (929)
+-+++.+.|.+.+.+|...|+++|+.. +++ || +.|+|+||+++++.+.+.|++.+|.++...-||..|||+||
T Consensus 238 ~~~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~ 315 (326)
T PF06723_consen 238 TSSEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGA 315 (326)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHH
Confidence 999999999999999999999999965 322 32 46999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy7891 413 VYKA 416 (929)
Q Consensus 413 a~~a 416 (929)
....
T Consensus 316 ~~~l 319 (326)
T PF06723_consen 316 GKLL 319 (326)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=258.14 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=173.7
Q ss_pred eeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCC
Q psy7891 135 LYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN 214 (929)
Q Consensus 135 ~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~ 214 (929)
.+.-.+.++++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34445788999999999999999989999999999999999999999999999999999999999999998632
Q ss_pred CCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc
Q psy7891 215 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF 294 (929)
Q Consensus 215 ~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~ 294 (929)
..+|+|+||||||+++++- | . ++. ..+..+||++||+.|++.+. .+
T Consensus 109 -----~~~vvDiGggtt~i~i~~~--------G------~--i~~-~~~~~~GG~~it~~Ia~~~~----------i~-- 154 (239)
T TIGR02529 109 -----NGAVVDVGGGTTGISILKK--------G------K--VIY-SADEPTGGTHMSLVLAGAYG----------IS-- 154 (239)
T ss_pred -----CcEEEEeCCCcEEEEEEEC--------C------e--EEE-EEeeecchHHHHHHHHHHhC----------CC--
Confidence 2599999999999999762 3 2 222 33567999999998876542 11
Q ss_pred CCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEE
Q psy7891 295 ENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQV 374 (929)
Q Consensus 295 ~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~V 374 (929)
+.+||++|+.++. ++++.++|.++++++...|+++|++. .++.|
T Consensus 155 ---------~~~AE~~K~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v 198 (239)
T TIGR02529 155 ---------FEEAEEYKRGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDL 198 (239)
T ss_pred ---------HHHHHHHHHhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 2579999986541 45677899999999999999999865 45689
Q ss_pred EEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 375 ILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 375 iLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
+|+||++++|.+++.|++.||.++..+.||++++|.|||+
T Consensus 199 ~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 199 YLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred EEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999998888899999999999986
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=237.72 Aligned_cols=311 Identities=21% Similarity=0.302 Sum_probs=241.2
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec--C---ceeecHHHHHhhhhCCCChHhhhHHhcCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK--G---ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 99 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~--~---~~~~G~~A~~~~~~~p~~t~~~~K~llG~~ 99 (929)
+..+||||||.|+.|..-..| |++|+ ||+|++.. + -..+|.+|+.+..+.|.|.
T Consensus 6 s~diGIDLGTanTlV~~k~kg----IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni----------- 64 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG----IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI----------- 64 (342)
T ss_pred cccceeeecccceEEEEcCce----EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCc-----------
Confidence 458999999999998776444 77776 99999965 2 2468999876654444332
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcc-cccceEEEEecCCCCHHHHH
Q psy7891 100 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG-QVINEAVIIVPGYFNQIERQ 178 (929)
Q Consensus 100 ~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~-~~v~~~VItVPa~f~~~qR~ 178 (929)
.......++ .+---+++..+|+|+.+....... .....++|.||..-++.+|+
T Consensus 65 -------------------------~aiRPmkdG-VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 65 -------------------------VAIRPMKDG-VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred -------------------------eEEeecCCc-EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 122233343 344456677788888777754333 34457999999999999999
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~ 258 (929)
|+++|++.||..-+.++.||.|||+..++.-.. +..-+|||+||||||++++.+. | +.
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~e------p~G~mvvDIGgGTTevaVISlg-------g---------iv 176 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIME------PTGSMVVDIGGGTTEVAVISLG-------G---------IV 176 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccC------CCCCEEEEeCCCceeEEEEEec-------C---------EE
Confidence 999999999999999999999999988875432 5677999999999999999975 5 22
Q ss_pred EEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC--------CCceeEEEeecccC
Q psy7891 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA--------NNEHFAQIEGLIDE 330 (929)
Q Consensus 259 ~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~--------~~~~~v~ie~l~~~ 330 (929)
++....+||+.||..|.+|+.++|+- .-..+ .||++|+..-. ..+..+.-.++..+
T Consensus 177 -~~~Sirv~GD~~De~Ii~yvr~~~nl--------~IGe~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~G 240 (342)
T COG1077 177 -SSSSVRVGGDKMDEAIIVYVRKKYNL--------LIGER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTG 240 (342)
T ss_pred -EEeeEEEecchhhHHHHHHHHHHhCe--------eecHH-------HHHHHHHHhcccccccCCccceeeEEeeecccC
Confidence 22335799999999999999998854 12222 36777765432 12234455567778
Q ss_pred cceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHc--CCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHH
Q psy7891 331 IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEA 407 (929)
Q Consensus 331 ~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~dea 407 (929)
..-.++++-++..+.+++.+++|.+.++..|+.. .+..+-++. ++|+||++.+..+.+.|.+..+..+...-+|-.|
T Consensus 241 lPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~ 320 (342)
T COG1077 241 LPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTC 320 (342)
T ss_pred CCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHH
Confidence 8889999999999999999999999999999986 344455666 9999999999999999999999888889999999
Q ss_pred HHhhHHHHHHhhc
Q psy7891 408 AALGAVYKAADLS 420 (929)
Q Consensus 408 VA~GAa~~aa~~s 420 (929)
||+|+.+....+.
T Consensus 321 Va~G~G~~le~~~ 333 (342)
T COG1077 321 VAKGTGKALEALD 333 (342)
T ss_pred HHhccchhhhhhH
Confidence 9999988877654
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=239.35 Aligned_cols=202 Identities=21% Similarity=0.286 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 139 eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
.+.....|+++++.++.++|..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+. .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5567778999999999998988999999999999999999999999999999999999999999887531 1
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+++|||||||+++++. .| .+ .. ..+..+||++||+.|++++.- +
T Consensus 137 --~~vvDIGggtt~i~v~~--------~g------~~--~~-~~~~~~GG~~it~~Ia~~l~i----------~------ 181 (267)
T PRK15080 137 --GAVVDIGGGTTGISILK--------DG------KV--VY-SADEPTGGTHMSLVLAGAYGI----------S------ 181 (267)
T ss_pred --cEEEEeCCCcEEEEEEE--------CC------eE--EE-EecccCchHHHHHHHHHHhCC----------C------
Confidence 58999999999999975 13 22 22 246789999999999987621 1
Q ss_pred HHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEc
Q psy7891 299 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvG 378 (929)
+.+||++|+.++ +++++.++++++++++.+.|++.|+.. .++.|+|+|
T Consensus 182 -----~~eAE~lK~~~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtG 229 (267)
T PRK15080 182 -----FEEAEQYKRDPK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVG 229 (267)
T ss_pred -----HHHHHHHHhccC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEEC
Confidence 357889988753 357889999999999999999999864 678999999
Q ss_pred CCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 379 G~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
|+|++|.+++.+++.||.++....||+.++|.|||++|
T Consensus 230 G~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 230 GTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999888889999999999999875
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=215.36 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
....+.+.+|++.|||++..++.||.|+|++|..... . +..++++|+||||||++++.- |
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~-----~-~~~~~vvDiG~gtt~i~i~~~--------g------ 216 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE-----K-ELGVCLIDIGGGTTDIAVYTG--------G------ 216 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch-----h-cCCEEEEEeCCCcEEEEEEEC--------C------
Confidence 3456788899999999999999999999998854321 2 567999999999999999862 3
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC------CceeEEEeec
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------NEHFAQIEGL 327 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------~~~~v~ie~l 327 (929)
.+.. .....+||++||..|++.+. + .+.+||++|+.++.. .+..+.++.+
T Consensus 217 ~~~~---~~~i~~GG~~it~~i~~~l~------------~---------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~ 272 (371)
T TIGR01174 217 SIRY---TKVIPIGGNHITKDIAKALR------------T---------PLEEAERIKIKYGCASIPLEGPDENIEIPSV 272 (371)
T ss_pred EEEE---EeeecchHHHHHHHHHHHhC------------C---------CHHHHHHHHHHeeEecccCCCCCCEEEeccC
Confidence 2211 23357999999998876541 1 146799999998863 2345556544
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHhHHHHHHH-HHHHHcCCCCCCccE-EEEEcCCcCCHHHHHHHHHHhCCcc--CCC--
Q psy7891 328 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVE-QALKSSAVPMDVISQ-VILVGAGTRVPKVQEKITKVVGVEL--SKN-- 401 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~-~~L~~a~~~~~~I~~-ViLvGG~sriP~v~~~l~~~f~~~i--~~~-- 401 (929)
+.++...|+|++|++++.+.++++...|. +.|+.++.. ++++. |+|+||+|++|.|++.+++.|+.++ ..+
T Consensus 273 --~~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~ 349 (371)
T TIGR01174 273 --GERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQN 349 (371)
T ss_pred --CCCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCc
Confidence 34677899999999999999999999997 999998876 67777 9999999999999999999999432 211
Q ss_pred --------CCchHHHHhhHHHH
Q psy7891 402 --------LNTDEAAALGAVYK 415 (929)
Q Consensus 402 --------~n~deaVA~GAa~~ 415 (929)
-+|..++|.|.++|
T Consensus 350 ~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 350 IGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred cCCchhhcCCcHHHHHHHHHhC
Confidence 26778888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=205.24 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
..++.. ..|++.|||++..++.||.|+|+++..... . +..++++||||||||++++. .|
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e-----~-~~gv~vvDiGggtTdisv~~--------~G------ 224 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTEDE-----R-ELGVCVVDIGGGTMDIAVYT--------GG------ 224 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcChhh-----h-hcCeEEEEeCCCceEEEEEE--------CC------
Confidence 344444 579999999999999999999998854321 2 57799999999999999997 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC----C--CceeEEEeec
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA----N--NEHFAQIEGL 327 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~----~--~~~~v~ie~l 327 (929)
.+ .+.....+||++|+..|+..|. + -+.+||++|+.+.. . .+..+.++.+
T Consensus 225 ~l---~~~~~i~~GG~~it~dIa~~l~------------i---------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~ 280 (420)
T PRK09472 225 AL---RHTKVIPYAGNVVTSDIAYAFG------------T---------PPSDAEAIKVRHGCALGSIVGKDESVEVPSV 280 (420)
T ss_pred EE---EEEeeeechHHHHHHHHHHHhC------------c---------CHHHHHHHHHhcceeccccCCCCceeEecCC
Confidence 22 2223357999999998886552 1 13579999965432 1 2345666654
Q ss_pred ccCcceEEEEeHHHHHHHHHHHHhHHHHHHH-------HHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccC-
Q psy7891 328 IDEIDFKLLVTRAEFEALNEDLFDRVGYPVE-------QALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELS- 399 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~~l~~~i~~~i~-------~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~- 399 (929)
.+.. ...|+|.+|.+++.+.++.+.+.|. ..|..+++....++.|+|+||++++|.|++.+++.|+.++.
T Consensus 281 ~~~~--~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri 358 (420)
T PRK09472 281 GGRP--PRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRI 358 (420)
T ss_pred CCCC--CeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEE
Confidence 3322 3589999999999996666665554 45567788777899999999999999999999999984322
Q ss_pred -C----------CCCchHHHHhhHHHHHHh
Q psy7891 400 -K----------NLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 400 -~----------~~n~deaVA~GAa~~aa~ 418 (929)
. .-+|..|+|.|.++|+..
T Consensus 359 ~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 359 GAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred eCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 1 247999999999999863
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=160.90 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=162.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeecc
Q psy7891 164 AVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKT 243 (929)
Q Consensus 164 ~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~ 243 (929)
.++++|..+ -+.|.+|++.+||++..++-+|-|+|.+....... ...++++||||||||+++++
T Consensus 158 hvit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk------elGv~lIDiG~GTTdIai~~------ 221 (418)
T COG0849 158 HVITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK------ELGVALIDIGGGTTDIAIYK------ 221 (418)
T ss_pred EEEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH------hcCeEEEEeCCCcEEEEEEE------
Confidence 466766554 56688888999999999999999999876544322 67899999999999999987
Q ss_pred ccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC------
Q psy7891 244 KERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN------ 317 (929)
Q Consensus 244 ~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~------ 317 (929)
.| . +.+.+...+||++++..|+.-|.-.| ..||++|...-..
T Consensus 222 --~G------~---l~~~~~ipvgG~~vT~DIa~~l~t~~---------------------~~AE~iK~~~g~a~~~~~~ 269 (418)
T COG0849 222 --NG------A---LRYTGVIPVGGDHVTKDIAKGLKTPF---------------------EEAERIKIKYGSALISLAD 269 (418)
T ss_pred --CC------E---EEEEeeEeeCccHHHHHHHHHhCCCH---------------------HHHHHHHHHcCccccCcCC
Confidence 24 2 22333467999999999998774333 3588888775332
Q ss_pred CceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-
Q psy7891 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV- 396 (929)
Q Consensus 318 ~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~- 396 (929)
.+..+.++...++. ...++|.++.++++.-+..+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.
T Consensus 270 ~~~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~ 347 (418)
T COG0849 270 DEETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRP 347 (418)
T ss_pred CcceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCc
Confidence 23456666654443 788999999999999999999999999999999877778999999999999999999999984
Q ss_pred -ccCCC----------CCchHHHHhhHHHHHHhh
Q psy7891 397 -ELSKN----------LNTDEAAALGAVYKAADL 419 (929)
Q Consensus 397 -~i~~~----------~n~deaVA~GAa~~aa~~ 419 (929)
++..+ .+|..+.|.|..++++..
T Consensus 348 vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 348 VRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred eEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 22222 357889999999988754
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=163.17 Aligned_cols=301 Identities=16% Similarity=0.108 Sum_probs=188.8
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe----------cCceeecHHHHHhhhhCCCChHhhhHHhc
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH----------KGERTFGEDAQIIGTRFPSNSYGYFLDLL 96 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~----------~~~~~~G~~A~~~~~~~p~~t~~~~K~ll 96 (929)
.|.||+||.++++++..++.|.-+ +||+|+.. ....++|.+|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~---------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV---------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE---------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------
Confidence 378999999999999876645433 46666553 2356777776542210
Q ss_pred CCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHH
Q psy7891 97 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 176 (929)
Q Consensus 97 G~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~q 176 (929)
.+.-++|+ .++. +.--+.+..+++++....-.. ...-..++|++|..++..+
T Consensus 59 ----------~~~~~~P~----------------~~G~-i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 59 ----------GLELIYPI----------------EHGI-VVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred ----------ceEEcccc----------------cCCE-EeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHH
Confidence 00011121 1221 222344556666665432111 1124579999999999888
Q ss_pred HHHHHHH-HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE
Q psy7891 177 RQSMLKA-GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 255 (929)
Q Consensus 177 R~al~~A-a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~ 255 (929)
|+.+.+. .+..|+..+.+++++.+|+++++. .+.+|+|+|+++|+++.+. .| .
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----------~~~lVVDiG~~~t~i~pv~--------~G-------~ 164 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASGR-----------TTGLVVDSGDGVTHVVPVY--------DG-------Y 164 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------CeEEEEECCCCeeEEEEEE--------CC-------E
Confidence 8888775 577899999999999999988862 5789999999999998876 24 2
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc--------------ee
Q psy7891 256 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE--------------HF 321 (929)
Q Consensus 256 ~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~--------------~~ 321 (929)
-+........+||.++|..|.++|..+... .+.. .-...++.+|+.+..-.. ..
T Consensus 165 ~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~-----~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~ 232 (371)
T cd00012 165 VLPHAIKRLDLAGRDLTRYLKELLRERGYE-----LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLL 232 (371)
T ss_pred EchhhheeccccHHHHHHHHHHHHHhcCCC-----ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCcc
Confidence 222222345799999999999998654321 0111 112235555554322100 00
Q ss_pred EEEeecccCcceEEEEeHHHHHHHHHHHHh---------HHHHHHHHHHHHcCC--CCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 322 AQIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQALKSSAV--PMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 322 v~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~~L~~a~~--~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
.....+-++ ..+.++.+.| .+++-+|+ .+.+.|.++|..+.. ...-++.|+|+||+|++|.+.++|
T Consensus 233 ~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl 309 (371)
T cd00012 233 EKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERL 309 (371)
T ss_pred ceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHH
Confidence 001111122 3455665544 33444444 678888888887643 223467899999999999999999
Q ss_pred HHHhCC----------ccCCCCCchHHHHhhHHHHHHh
Q psy7891 391 TKVVGV----------ELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 391 ~~~f~~----------~i~~~~n~deaVA~GAa~~aa~ 418 (929)
.+.++. .+....++..++-+||+++|..
T Consensus 310 ~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 310 QKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 988872 1234567888999999998864
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=156.55 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=180.2
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC---------ceeecHHHHHhhhhCCCChHhhhHHhc
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG---------ERTFGEDAQIIGTRFPSNSYGYFLDLL 96 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~---------~~~~G~~A~~~~~~~p~~t~~~~K~ll 96 (929)
.+|+||+||.++++++.....|.- .+||+|+.... ..++|.+|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~---------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~--------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV---------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE---------EccceeeEecccccccCCCcceEecchhhhcC---------------
Confidence 368999999999999886654432 35888877422 235666653211
Q ss_pred CCCCCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhccc--ccceEEEEecCCCCH
Q psy7891 97 GKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQ 174 (929)
Q Consensus 97 G~~~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~--~v~~~VItVPa~f~~ 174 (929)
+. ..-++|+ .++ .+.--+.+..+++++... .++. .-..++|++|...+.
T Consensus 58 ~~---------~~~~~P~----------------~~G-~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 58 GG---------LELKYPI----------------EHG-IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred CC---------ceecCCC----------------cCC-EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 0011122 122 223345566777777653 2222 234689999999999
Q ss_pred HHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 175 IERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 175 ~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
.+|+.+.+.+ +..|+.-+.+++++.+|+++++ ..+.+|+|+|+++|+++.|. .|
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~pv~--------~G------ 163 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG-----------RTTGLVIDSGDGVTHVVPVV--------DG------ 163 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------CCEEEEEecCCCcceEEEEE--------CC------
Confidence 9999998887 5779999999999999998876 35789999999999999886 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC---------------
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN--------------- 318 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~--------------- 318 (929)
.-+........+||.++|..|.++|...-.. . +.. .-...++.+|+.+..-.
T Consensus 164 -~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~---~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 164 -YVLPHAIKRIDIAGRDLTDYLKELLSERGYQ---F--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred -EEchhhheeccCcHHHHHHHHHHHHHhcCCC---C--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 2222222335799999999999988662100 0 110 11123444444332100
Q ss_pred -ceeEEEeecccCcceEEEEeHHHHHHHHHHHH---------hHHHHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHH
Q psy7891 319 -EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLF---------DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKV 386 (929)
Q Consensus 319 -~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v 386 (929)
.....--.+-++.. +.+..+.| .+++.+| ..+.+.|.++|..+... ..-.+.|+|+||+|++|.+
T Consensus 231 ~~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl 307 (373)
T smart00268 231 SSKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGF 307 (373)
T ss_pred ccccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCH
Confidence 00000011122322 33433333 2333344 36778888888876422 1224669999999999999
Q ss_pred HHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 387 QEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 387 ~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++|.+.+.. .+....++..++=+||+++|.
T Consensus 308 ~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 308 GERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 9999888741 222334455666677776664
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=132.99 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEE
Q psy7891 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMF 223 (929)
Q Consensus 144 ~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv 223 (929)
.+.+++++.++..+|.++++..=++|+.--+...++..+..+.||++++..++||||||.-.++. .-.|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~-----------dg~V 144 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD-----------DGGV 144 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC-----------CCcE
Confidence 46789999999999999999999999999888888888999999999999999999999655433 2368
Q ss_pred EEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHH
Q psy7891 224 YDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKL 303 (929)
Q Consensus 224 ~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL 303 (929)
+|+|||||-++|++ .| . |+ +.-|...||.++...|+-+. +++
T Consensus 145 VDiGGGTTGIsi~k--------kG------k--Vi-y~ADEpTGGtHmtLvlAG~y----------gi~----------- 186 (277)
T COG4820 145 VDIGGGTTGISIVK--------KG------K--VI-YSADEPTGGTHMTLVLAGNY----------GIS----------- 186 (277)
T ss_pred EEeCCCcceeEEEE--------cC------c--EE-EeccCCCCceeEEEEEeccc----------CcC-----------
Confidence 99999999999998 25 2 22 34467889988776665322 111
Q ss_pred HHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCC
Q psy7891 304 FKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV 383 (929)
Q Consensus 304 ~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri 383 (929)
+.+||..|..--...+ .=..+.|+++++.+.+.+.++..+ |..+.|+||+|.-
T Consensus 187 ~EeAE~~Kr~~k~~~E----------------------if~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~ 239 (277)
T COG4820 187 LEEAEQYKRGHKKGEE----------------------IFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQ 239 (277)
T ss_pred HhHHHHhhhccccchh----------------------cccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccC
Confidence 2356655553221111 112357899999999999888664 5579999999999
Q ss_pred HHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 384 PKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 384 P~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
|.+.+++++.|+..+..+..|-...-+|-|+
T Consensus 240 ~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 240 PGVEELFEKQLALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred ccHHHHHHHHhccccccCCCcceechhhhhh
Confidence 9999999999987777777766655556543
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=135.73 Aligned_cols=213 Identities=16% Similarity=0.164 Sum_probs=138.4
Q ss_pred ccceEE--EEecCCCCHHHH-HHHHHHHHHc------C------CcEEEEechhHHHHHHhcccccccC---CCCCCcEE
Q psy7891 160 VINEAV--IIVPGYFNQIER-QSMLKAGELA------G------LKVLQLMNDYTAVALNYGIFKRKDF---NETNPVHV 221 (929)
Q Consensus 160 ~v~~~V--ItVPa~f~~~qR-~al~~Aa~~A------G------l~~~~li~EptAAAl~y~~~~~~~~---~~~~~~~v 221 (929)
.+.+++ ...|..+...++ ..+.+..... | +..+.++.+|.+|.+++.......+ ... ...+
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~-~~~i 187 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFE-EGKV 187 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcc-cCcE
Confidence 344444 589988854453 5666554211 1 1235678999999888876533211 012 5678
Q ss_pred EEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHH
Q psy7891 222 MFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301 (929)
Q Consensus 222 lv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~ 301 (929)
+|+|+|+||||++++.- + .+ +....+....|..++...|++++...... ..+ +..
T Consensus 188 lvIDIG~~TtD~~v~~~--------~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~~~-----~~~--~~~--- 242 (344)
T PRK13917 188 SVIDFGSGTTDLDTIQN--------L------KR-VEEESFVIPKGTIDVYKRIASHISKKEEG-----ASI--TPY--- 242 (344)
T ss_pred EEEEcCCCcEEEEEEeC--------c------EE-cccccccccchHHHHHHHHHHHHHhhCCC-----CCC--CHH---
Confidence 99999999999999861 2 22 22333446789999999999888644321 122 121
Q ss_pred HHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCc
Q psy7891 302 KLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGT 381 (929)
Q Consensus 302 kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~s 381 (929)
++.+. |... .+.+. ... .+.+ ++++.++++++++++...|...+.. ..+++.|+|+||++
T Consensus 243 ~ie~~-------l~~g---~i~~~---~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA 302 (344)
T PRK13917 243 MLEKG-------LEYG---ACKLN---QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGA 302 (344)
T ss_pred HHHHH-------HHcC---cEEeC---CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcH
Confidence 22222 2111 11111 111 1222 4678889999999999999888853 34889999999999
Q ss_pred CCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 382 RVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 382 riP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
++ +++.|++.|+. +...-||..|-|+|...+|..+.+
T Consensus 303 ~l--l~~~lk~~f~~-~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 303 NI--FFDSLSHWYSD-VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HH--HHHHHHHHcCC-eEEcCChHHHHHHHHHHHHHHHhc
Confidence 87 88999999984 356689999999999999875543
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-10 Score=131.47 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccc-cCCC
Q psy7891 140 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRK-DFNE 215 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~-~~~~ 215 (929)
+.+..++.|+... .++ ..-..++||.|..++..+|+.+.+.+ +..|+.-+.+..++.+|+++++..... ...
T Consensus 82 d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~- 157 (414)
T PTZ00280 82 DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELG- 157 (414)
T ss_pred HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccC-
Confidence 4455667765432 122 11235899999999999999988877 555888899999999999876432211 000
Q ss_pred CCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccC
Q psy7891 216 TNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE 295 (929)
Q Consensus 216 ~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~ 295 (929)
+ ..+-||+|+|+|+|+++-|. .| +-+........+||.+++..|.++|.++.. .+..
T Consensus 158 g-~~tglVVDiG~~~T~i~PV~--------~G-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~ 214 (414)
T PTZ00280 158 G-TLTGTVIDSGDGVTHVIPVV--------DG-------YVIGSSIKHIPLAGRDITNFIQQMLRERGE-------PIPA 214 (414)
T ss_pred C-ceeEEEEECCCCceEEEEEE--------CC-------EEcccceEEecCcHHHHHHHHHHHHHHcCC-------CCCc
Confidence 1 34669999999999998775 25 111111123479999999999999865321 1111
Q ss_pred CHHHHHHHHHHHHHhhhhccCCC-----------------ceeEEEeecccCcceEEEEeHHHHH---HHHHHH-H----
Q psy7891 296 NPRAVAKLFKEAGRLKNVLSANN-----------------EHFAQIEGLIDEIDFKLLVTRAEFE---ALNEDL-F---- 350 (929)
Q Consensus 296 ~~~~~~kL~~~aek~K~~LS~~~-----------------~~~v~ie~l~~~~d~~~~itR~efe---~l~~~l-~---- 350 (929)
. ..+..++.+|+.+..-. ...+.++...++....+.|..+.|. -++.|- +
T Consensus 215 ~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~ 289 (414)
T PTZ00280 215 E-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEW 289 (414)
T ss_pred H-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCcc
Confidence 0 01123455555443210 0012222222233456778877764 233331 1
Q ss_pred -hHHHHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC
Q psy7891 351 -DRVGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV 396 (929)
Q Consensus 351 -~~i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~ 396 (929)
..+.++|.+++..+..+ .+-.+.|+|+||+|.+|.+.++|.+.+..
T Consensus 290 ~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred CCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 24677788888776432 22356799999999999999999988863
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=133.33 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=178.6
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC-----ceeecHHHHHhhhhCCCChHhhhHHhcCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG-----ERTFGEDAQIIGTRFPSNSYGYFLDLLGKS 99 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~-----~~~~G~~A~~~~~~~p~~t~~~~K~llG~~ 99 (929)
..+|-||+|+.++++++.....|- ..+||+++.... ..++|..+... .+
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~---------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~-------------- 57 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPR---------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RS-------------- 57 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-S---------EEEESEEEEESSSSSSSSCEETHHHHHT---GT--------------
T ss_pred CCEEEEECCCceEEEEECCCCCCC---------CcCCCccccccccccceeEEeecccccc---hh--------------
Confidence 567899999999999997555343 235888876433 34677663320 00
Q ss_pred CCCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHH
Q psy7891 100 IDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQS 179 (929)
Q Consensus 100 ~~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~a 179 (929)
...+...+.++. +.--+.+..++.++....- .....-..++++.|..++..+|+.
T Consensus 58 -----------------------~~~~~~p~~~g~-i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------------------NLELRSPIENGV-IVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------------------GEEEEESEETTE-ESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------------------heeeeeeccccc-ccccccccccccccccccc-ccccccceeeeeccccCCchhhhh
Confidence 000111112222 2223445666776655321 112234569999999999999998
Q ss_pred HHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEE
Q psy7891 180 MLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258 (929)
Q Consensus 180 l~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~ 258 (929)
+.+.+ +..|+.-+.+++++.+|+++++. .+-||+|+|++.|.|+-|. .| +-+.
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~-----------~tglVVD~G~~~t~v~pV~--------dG-------~~~~ 166 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR-----------TTGLVVDIGYSSTSVVPVV--------DG-------YVLP 166 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB-----------SSEEEEEESSS-EEEEEEE--------TT-------EE-G
T ss_pred hhhhhhcccccceeeeeeccccccccccc-----------ccccccccceeeeeeeeee--------ec-------cccc
Confidence 87766 56799999999999999988763 3459999999999998774 25 1111
Q ss_pred EEecCCCcchHHHHHHHHHHHHHH-hhhhcccCC---Ccc-CCHHHHHHHHHHHHHhhhhc---cC------------CC
Q psy7891 259 GVGYDRTLGGLEMQIRLRDFLGKK-FNEMKKTTK---DVF-ENPRAVAKLFKEAGRLKNVL---SA------------NN 318 (929)
Q Consensus 259 ~~~~d~~lGG~~~D~~l~~~l~~~-f~~~~~~~~---d~~-~~~~~~~kL~~~aek~K~~L---S~------------~~ 318 (929)
.......+||.+++..|.++|..+ +........ ... ........-...++.+|+.+ +. ..
T Consensus 167 ~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 246 (393)
T PF00022_consen 167 HSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENP 246 (393)
T ss_dssp GGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTT
T ss_pred cccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccccccccccccccccc
Confidence 111224699999999999999884 111000000 000 00000001111122222221 11 11
Q ss_pred ceeEEEeecccCcceEEEEeHHHHHHHHHHHHh----------------HHHHHHHHHHHHcCCCCC--CccEEEEEcCC
Q psy7891 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD----------------RVGYPVEQALKSSAVPMD--VISQVILVGAG 380 (929)
Q Consensus 319 ~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~----------------~i~~~i~~~L~~a~~~~~--~I~~ViLvGG~ 380 (929)
...+.+ -++. .+.+..+.| .+++.+|+ .+.++|.+++..+..... -...|+|+||+
T Consensus 247 ~~~~~l---Pdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 247 EKSYEL---PDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp TEEEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred ceeccc---cccc--ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 112222 2332 566666555 33343333 577888888887654322 24689999999
Q ss_pred cCCHHHHHHHHHHhCC--------ccCCCC-CchHHHHhhHHHHHHhh
Q psy7891 381 TRVPKVQEKITKVVGV--------ELSKNL-NTDEAAALGAVYKAADL 419 (929)
Q Consensus 381 sriP~v~~~l~~~f~~--------~i~~~~-n~deaVA~GAa~~aa~~ 419 (929)
|++|.+.++|.+.+.. ++.... ++..++=+||+++|..-
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 9999999999887752 223333 78889999999998743
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-09 Score=119.70 Aligned_cols=208 Identities=12% Similarity=0.088 Sum_probs=128.3
Q ss_pred ccceEEEEecCCCCHHHHHHHHHHHHHc---------CCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCce
Q psy7891 160 VINEAVIIVPGYFNQIERQSMLKAGELA---------GLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWS 230 (929)
Q Consensus 160 ~v~~~VItVPa~f~~~qR~al~~Aa~~A---------Gl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT 230 (929)
.+..+|+..|..+...||..+++...-. -+.-+.++.+|.+|.+.|......... . ...++|+|+|++|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~-~-~~~~lVIDIG~~T 178 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLT-G-KEQSLIIDPGYFT 178 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCccc-C-cCcEEEEecCCCe
Confidence 4567999999999999999998876531 224567899999998887654322111 2 5678999999999
Q ss_pred EEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHh
Q psy7891 231 TTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL 310 (929)
Q Consensus 231 ~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~ 310 (929)
+|+.++. .+ .+ +....+....|-.++-..|.+.+.+++.. +...+...+.. +
T Consensus 179 tD~~~~~--------~~------~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~------~~~~~~~~i~~---~---- 230 (320)
T TIGR03739 179 FDWLVAR--------GM------RL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT------PAYRDIDRIDL---A---- 230 (320)
T ss_pred eeeehcc--------CC------EE-cccccCCchhHHHHHHHHHHHHHHhhcCC------CCccCHHHHHH---H----
Confidence 9998764 12 22 33445556789888888888888777644 21111111111 1
Q ss_pred hhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 311 KNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 311 K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
|..... +.+ + +. .+.|+ +.++ .....++++..-|...+ + ...+++.|+|+||++. .+++.|
T Consensus 231 ---l~~g~~--~~~---~-gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l 291 (320)
T TIGR03739 231 ---LRTGKQ--PRI---Y-QK--PVDIK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAV 291 (320)
T ss_pred ---HHhCCc--eee---c-ce--ecCch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHH
Confidence 111110 001 1 11 11122 1122 22333333333333333 1 1236889999999987 667899
Q ss_pred HHHhCC-ccCCCCCchHHHHhhHHHHH
Q psy7891 391 TKVVGV-ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 391 ~~~f~~-~i~~~~n~deaVA~GAa~~a 416 (929)
++.|+. .+....||..|.|+|-..+|
T Consensus 292 ~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 292 KAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 999984 45566789999999987665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=123.81 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+.+..++.|+....- .....-..++||-|...+..+|+.|.+.. +..++..+.+.+.+.++++++| .
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-----------~ 147 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-----------K 147 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-----------C
Confidence 344456666643211 11222356899999999999999887766 5568888889999998887765 2
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+-||+|+|.|.|+++-|. .| +-+........+||.+++..|.+.|..+- . .+... .
T Consensus 148 ~tglVVDiG~~~t~v~PV~--------dG-------~~l~~~~~r~~~gG~~lt~~L~~lL~~~~-----~--~~~~~-~ 204 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVF--------EG-------HQIPQAITKINLAGRLCTDYLTQILQELG-----Y--SLTEP-H 204 (375)
T ss_pred ceeeeecCCCCcceEEEEE--------CC-------EEeccceEEeeccchHHHHHHHHHHHhcC-----C--CCCCH-H
Confidence 4669999999999998765 25 22222222346999999999988875421 0 11110 0
Q ss_pred HHHHHHHHHHHhhhhccCCCc------------eeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHHH
Q psy7891 299 AVAKLFKEAGRLKNVLSANNE------------HFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYP 356 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~~~~------------~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~ 356 (929)
. +..++.+|+.++.-.. ...... .|-++. .+.|..+.| .+.+.+|+ .+.++
T Consensus 205 ~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~ 277 (375)
T PTZ00452 205 Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHL 277 (375)
T ss_pred H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHH
Confidence 0 0112333333321100 000001 122232 456776666 23333332 35677
Q ss_pred HHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 357 VEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 357 i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
|.+++..+... ..-...|+|+||+|.+|.+.++|...+.. ++..+.+...++=+|+++.|.
T Consensus 278 i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 278 AYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 77777776432 22356899999999999999998877641 122233444566678877775
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=123.80 Aligned_cols=233 Identities=13% Similarity=0.112 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCC
Q psy7891 141 LVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN 217 (929)
Q Consensus 141 l~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~ 217 (929)
.+..++.|+... .+. ..-..++||-|.+....+|+.|.+.+ +..|+.-+.+...+.+++++++
T Consensus 82 ~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g----------- 147 (376)
T PTZ00281 82 DMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------- 147 (376)
T ss_pred HHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-----------
Confidence 444566665431 222 22346889999999999999988755 6678888899999999987765
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
..+-||+|+|.+.|.++-|. .| +-+........+||.+++..|.+.|..+-. .+.. .
T Consensus 148 ~~tglVVDiG~~~t~v~PV~--------dG-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~-~ 204 (376)
T PTZ00281 148 RTTGIVMDSGDGVSHTVPIY--------EG-------YALPHAILRLDLAGRDLTDYMMKILTERGY-------SFTT-T 204 (376)
T ss_pred CceEEEEECCCceEEEEEEE--------ec-------ccchhheeeccCcHHHHHHHHHHHHHhcCC-------CCCc-H
Confidence 24669999999999987554 14 222222233579999999999988754311 1110 1
Q ss_pred HHHHHHHHHHHHhhhhccCCC------------ceeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHH
Q psy7891 298 RAVAKLFKEAGRLKNVLSANN------------EHFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGY 355 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~------------~~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~ 355 (929)
.- ...++.+|+.+.--. ....... .|-++. .+.|..+.| .+.+.||+ .+.+
T Consensus 205 -~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~--~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~ 277 (376)
T PTZ00281 205 -AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQ--VITIGNERF-RCPEALFQPSFLGMESAGIHE 277 (376)
T ss_pred -HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCC--EEEeeHHHe-eCcccccChhhcCCCCCCHHH
Confidence 00 122444454432110 0001111 122222 355665544 22333443 4667
Q ss_pred HHHHHHHHcCCCC--CCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 356 PVEQALKSSAVPM--DVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 356 ~i~~~L~~a~~~~--~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
+|.+++..+..+. .-.+.|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 278 TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 7777877664321 2246799999999999999998887751 123334556677788887775
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-09 Score=117.87 Aligned_cols=183 Identities=16% Similarity=0.172 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccc-cccCCCCCCc-EEEEEEcCCceEEEEEEEEEeeccccCCcccC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFK-RKDFNETNPV-HVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 251 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~-~~~~~~~~~~-~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~ 251 (929)
....+.+.++++.||+++..+.-+|.|.+-.+.+.. ....... .. .++++|+|+++|+++++. .|
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~-~~~~~~lvdiG~~~t~l~i~~--------~g---- 208 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTY-RLTDAALVDIGATSSTLNLLH--------PG---- 208 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccc-cCceEEEEEECCCcEEEEEEE--------CC----
Confidence 456778889999999999999888888765553110 0000011 33 499999999999999987 24
Q ss_pred CCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCc
Q psy7891 252 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI 331 (929)
Q Consensus 252 ~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~ 331 (929)
.+. ......+||.+|+..|++.+. +. ..+||+.|..-.... ..
T Consensus 209 --~~~---~~r~i~~G~~~i~~~i~~~~~------------~~---------~~~Ae~~k~~~~~~~-----------~~ 251 (348)
T TIGR01175 209 --RML---FTREVPFGTRQLTSELSRAYG------------LN---------PEEAGEAKQQGGLPL-----------LY 251 (348)
T ss_pred --eEE---EEEEeechHHHHHHHHHHHcC------------CC---------HHHHHHHHhcCCCCC-----------ch
Confidence 221 122356999999988875431 11 245777776432111 00
Q ss_pred ceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccC--C-------
Q psy7891 332 DFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELS--K------- 400 (929)
Q Consensus 332 d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~--~------- 400 (929)
-.+++++.++++..-|.+.|.-. ......++.|+|+||+++++.+.+.+++.||.++. .
T Consensus 252 ----------~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~ 321 (348)
T TIGR01175 252 ----------DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMAL 321 (348)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhccc
Confidence 02345556666666666666432 22334689999999999999999999999983221 0
Q ss_pred ----------CCCchHHHHhhHHHHH
Q psy7891 401 ----------NLNTDEAAALGAVYKA 416 (929)
Q Consensus 401 ----------~~n~deaVA~GAa~~a 416 (929)
..+|..++|.|+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 322 DAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 1234667888887764
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=121.56 Aligned_cols=235 Identities=12% Similarity=0.075 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 216 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~ 216 (929)
+.+..++.|+.. ..++ ..-..+++|.|.+.+..+|+.+.+.+ +..|+..+.++.++.+|+++++
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g---------- 147 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG---------- 147 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC----------
Confidence 445566666432 1222 22346889999999999998777665 6679999999999999987765
Q ss_pred CCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCC
Q psy7891 217 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 296 (929)
Q Consensus 217 ~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~ 296 (929)
..+-+|+|+|++.|+++-|. .| +-+........+||.+++..|.+.|..+-. .+..
T Consensus 148 -~~tglVVDiG~~~t~v~pV~--------dG-------~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~-------~~~~- 203 (378)
T PTZ00004 148 -RTTGIVLDSGDGVSHTVPIY--------EG-------YSLPHAIHRLDVAGRDLTEYMMKILHERGT-------TFTT- 203 (378)
T ss_pred -CceEEEEECCCCcEEEEEEE--------CC-------EEeecceeeecccHHHHHHHHHHHHHhcCC-------CCCc-
Confidence 24569999999999998765 25 222222333579999999999998854311 1111
Q ss_pred HHHHHHHHHHHHHhhhhccCCC------------c-eeEEEe-ecccCcceEEEEeHHHHH---HHHHHH------HhHH
Q psy7891 297 PRAVAKLFKEAGRLKNVLSANN------------E-HFAQIE-GLIDEIDFKLLVTRAEFE---ALNEDL------FDRV 353 (929)
Q Consensus 297 ~~~~~kL~~~aek~K~~LS~~~------------~-~~v~ie-~l~~~~d~~~~itR~efe---~l~~~l------~~~i 353 (929)
... ..-++..|+.+..-. . ...... .|-++. .+.|..+.|. -++.|- ...+
T Consensus 204 -~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi 277 (378)
T PTZ00004 204 -TAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGI 277 (378)
T ss_pred -HHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCCh
Confidence 111 112333443331100 0 000111 122332 3455655542 233332 2346
Q ss_pred HHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 354 GYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 354 ~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++|.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. ++..+.++..++=+||++.|.
T Consensus 278 ~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 278 HELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 67778888776432 22346799999999999999998887751 122234455666677777664
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-09 Score=119.60 Aligned_cols=235 Identities=12% Similarity=0.113 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+.+..++.|+.+... ....-..+++|-|+.++..+|+.+.+.+ +..|+.-+.+.+.+.+|+++++ .
T Consensus 87 d~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----------~ 153 (380)
T PTZ00466 87 NDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-----------K 153 (380)
T ss_pred HHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-----------C
Confidence 345556666643211 1112346889999999999999887665 6678888899999999887765 3
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
.+-+|+|+|.+.|.++-|. .| +-+........+||.+++.-|.+.|.+. ....+..
T Consensus 154 ~tglVVD~G~~~t~v~PV~--------~G-------~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~---- 209 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIY--------EG-------YSITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNTS---- 209 (380)
T ss_pred ceEEEEeCCCCceEEEEEE--------CC-------EEeecceeEecCchhHHHHHHHHHHHhc-----CCCCCcH----
Confidence 4679999999999997664 25 2222223335799999999999887532 1100100
Q ss_pred HHHHHHHHHHHhhhhccC---C--------CceeEEEe-ecccCcceEEEEeHHHHHHHHHHHHh---------HHHHHH
Q psy7891 299 AVAKLFKEAGRLKNVLSA---N--------NEHFAQIE-GLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPV 357 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~---~--------~~~~v~ie-~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i 357 (929)
. -+..++.+|+.+.. + ........ .|-++ ..+.|..+.|. +.+.+|+ .+.++|
T Consensus 210 ~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg--~~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i 283 (380)
T PTZ00466 210 A---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDG--SQILIGSERYR-APEVLFNPSILGLEYLGLSELI 283 (380)
T ss_pred H---HHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCC--cEEEEchHHhc-CcccccCccccCCCCCCHHHHH
Confidence 1 11223344443321 0 00000111 12222 24556666552 3333333 456777
Q ss_pred HHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 358 EQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 358 ~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
.+++..+..+ ..-...|+|+||+|.+|.+.++|...+.. .+....+...++=+||+++|.
T Consensus 284 ~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 284 VTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 7777776432 22356799999999999999999888742 122233445566678877765
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-09 Score=118.06 Aligned_cols=184 Identities=23% Similarity=0.284 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
...-..+.++++.|||++..+=-++.|.+-.|...............++++|+|+.++.++++. .|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--------~g------ 200 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--------NG------ 200 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--------TT------
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--------CC------
Confidence 3456678889999999986664444443322322111111111156899999999999999987 24
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcce
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDF 333 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~ 333 (929)
.+.. .-...+||.++++.|++.+.-.+ .+|+..|..-+-..
T Consensus 201 ~~~f---~R~i~~G~~~l~~~i~~~~~i~~---------------------~~Ae~~k~~~~l~~--------------- 241 (340)
T PF11104_consen 201 KPIF---SRSIPIGGNDLTEAIARELGIDF---------------------EEAEELKRSGGLPE--------------- 241 (340)
T ss_dssp EEEE---EEEES-SHHHHHHHHHHHTT--H---------------------HHHHHHHHHT-------------------
T ss_pred EEEE---EEEEeeCHHHHHHHHHHhcCCCH---------------------HHHHHHHhcCCCCc---------------
Confidence 2221 11247999999999997753322 23555554321100
Q ss_pred EEEEeHHHHHHHHHHHHhHHHHHHHHHHHH--cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc---------CCCC
Q psy7891 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKS--SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------SKNL 402 (929)
Q Consensus 334 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~--a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---------~~~~ 402 (929)
+...+.+.+.++++..-|.+.|+- +......|+.|+|+||++++|.+.+.|.+.+|.++ ....
T Consensus 242 ------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~ 315 (340)
T PF11104_consen 242 ------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDP 315 (340)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--T
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCc
Confidence 222345555666666666666552 22334589999999999999999999999998322 1111
Q ss_pred ----------CchHHHHhhHHHHH
Q psy7891 403 ----------NTDEAAALGAVYKA 416 (929)
Q Consensus 403 ----------n~deaVA~GAa~~a 416 (929)
.|..++|.|.|+.+
T Consensus 316 ~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 316 KINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhhhhhhHHHHHHHHhhcC
Confidence 25678999998864
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=93.48 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
+++.++++|..+.-- +....-.-++||-|++=+.+.|+.+.+.+ +...+....|..+++++|++-| .
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----------r 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----------R 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----------C
Confidence 566777777764221 11222356899999999999998877765 6667778888888888887655 4
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
.+.||+|+|+++|.|+=|. .| .+--.++.- ..|||+.++..+.++|..+
T Consensus 154 stalVvDiGa~~~svsPV~--------DG------~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--------DG------YVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--------cc------eEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 6789999999999998765 25 232333333 5899999999999999876
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-07 Score=98.72 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=96.9
Q ss_pred cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE-EEEEEecCCCcch
Q psy7891 190 KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV-SVLGVGYDRTLGG 268 (929)
Q Consensus 190 ~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~-~v~~~~~d~~lGG 268 (929)
..+.++.|+.||.+.+...-. . ...+||+|+||+|+|++++. | .+ .+-.+.+...+|-
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-----~-~~~~lVVDIGG~T~Dv~~v~---------~------~~~~~~~~~~~~~~Gv 199 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-----E-DESVLVVDIGGRTTDVAVVR---------G------GLPDISKCSGTPEIGV 199 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------T-TSEEEEEEE-SS-EEEEEEE---------G------GG--EEEEEEETTSST
T ss_pred eeEEEEcccHHHHHHHHHhhc-----c-cCcEEEEEcCCCeEEeeeec---------C------CccccchhccCCchhH
Confidence 356789999999988765521 1 46799999999999999886 2 12 2233445567999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHH
Q psy7891 269 LEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNED 348 (929)
Q Consensus 269 ~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~ 348 (929)
..+-..+.+.|...... . +.....++.+.. +-+..++. ...+.+ .++++.++++.
T Consensus 200 s~~~~~I~~~l~~~~~~-------~--s~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~ 254 (318)
T PF06406_consen 200 SDLYDAIAQALRSAGID-------T--SELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEE 254 (318)
T ss_dssp HHHHHHHHHHTT--SBH-------H--HHHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-------C--cHHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHH
Confidence 88888877777651111 0 001111111100 00001110 000100 13344455555
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC---CccCCCCCchHHHHhhHH
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAV 413 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~---~~i~~~~n~deaVA~GAa 413 (929)
.++++..-|.+.+.. ..+++.|+|+||++ ..+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 255 ~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 255 AVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 555555555554432 34788999999997 567889999987 366678899999999964
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-07 Score=95.51 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=100.4
Q ss_pred EEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHH
Q psy7891 193 QLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQ 272 (929)
Q Consensus 193 ~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D 272 (929)
..++|.+|-+........ ..=.|+|+||..+-+.++. . | .+.-.........|+-.|.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--------~~~~vidiGgqd~k~i~~~-~-------g------~~~~~~~n~~ca~Gtg~f~ 130 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--------EARGVIDIGGQDSKVIKID-D-------G------KVDDFTMNDKCAAGTGRFL 130 (248)
T ss_pred CceEEhhHHHHHHHHHCC--------CCCEEEEecCCeeEEEEEC-C-------C------cEeeeeecCcccccccHHH
Confidence 357788877654433322 2225999999988887775 2 4 3322334444567888888
Q ss_pred HHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee-cccCcceEEEEeHHHHHHHHHHHHh
Q psy7891 273 IRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG-LIDEIDFKLLVTRAEFEALNEDLFD 351 (929)
Q Consensus 273 ~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~-l~~~~d~~~~itR~efe~l~~~l~~ 351 (929)
+.+++.|--.+.+ +..+ +.+.+....-+....+..+. +.... .-..++ ++++..++.
T Consensus 131 e~~a~~l~~~~~e--------------~~~~---~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~~---~di~~~~~~ 188 (248)
T TIGR00241 131 EVTARRLGVSVEE--------------LGSL---AEKADRKAKISSMCTVFAESELISLL--AAGVKK---EDILAGVYE 188 (248)
T ss_pred HHHHHHcCCCHHH--------------HHHH---HhcCCCCCCcCCEeEEEechhHHHHH--HCCCCH---HHHHHHHHH
Confidence 7777665311111 1111 11111111111111222211 11100 011233 345555555
Q ss_pred HHHHHHHHHHHHcCCCCCCcc-EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 352 RVGYPVEQALKSSAVPMDVIS-QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 352 ~i~~~i~~~L~~a~~~~~~I~-~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.+..-+.+.+...+ ++ .|+|+||.++.|.+.+.+.+.++.++..+-++..+.|+|||+
T Consensus 189 ~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 189 SIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 55555555554332 44 799999999999999999999998888888999999999997
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-06 Score=86.60 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCC-CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcE
Q psy7891 177 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETN-PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQV 255 (929)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~-~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~ 255 (929)
-....+|+++|||...-+==|.-|.-=+|...- ..+...+ ...|+|+|+|+.++.++++. .|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~-~~~~~~~a~~~vav~~Igat~s~l~vi~--------~g-------- 213 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLA-SQFGPEEAAMKVAVFDIGATSSELLVIQ--------DG-------- 213 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHH-HHhCCchhhhhheeeeecccceEEEEEE--------CC--------
Confidence 345678999999987544344444433443111 1121110 33479999999999999987 24
Q ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEE
Q psy7891 256 SVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKL 335 (929)
Q Consensus 256 ~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~ 335 (929)
..+ +.-+..+||+.++..|.+.+--.+ ..++.+|....-.. |..
T Consensus 214 k~l-y~r~~~~g~~Qlt~~i~r~~~L~~---------------------~~a~~~k~~~~~P~-------------~y~- 257 (354)
T COG4972 214 KIL-YTREVPVGTDQLTQEIQRAYSLTE---------------------EKAEEIKRGGTLPT-------------DYG- 257 (354)
T ss_pred eee-eEeeccCcHHHHHHHHHHHhCCCh---------------------hHhHHHHhCCCCCC-------------chh-
Confidence 122 233467999999988876542111 12445554332221 010
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
-+-+.....++.++|...|+-.+..++ ..+|++++|.||+.++-.+.+.|.+.++
T Consensus 258 ---~~vl~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 258 ---SEVLRPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 112223444555555555555555453 4589999999999999999999999987
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=103.85 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=63.0
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
..+|.+|-..+-+-+.-....+-+.|+..+. .++.|+++||+++++.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467777665444433333333345555554 4778999999999999999999999988866666777899999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 99776544
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-06 Score=96.45 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=113.6
Q ss_pred EEEEcCccceEEEEEECCCceEEeeCCCCCcc-ceEEEE-EecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 28 MSVDLGSEWMKVAIVSPGVPMEIALNKESKRK-TPTLVA-FHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 28 vGID~GTt~s~va~~~~g~~~~iv~n~~~~r~-~PS~V~-~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
+-||.||.++++++..+..|.-+..+..+++. ..++.. -..+.+.+|.++...... +.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~------------------- 68 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SL------------------- 68 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-cc-------------------
Confidence 89999999999999988777777766666664 333332 123345555555432110 00
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
......+..+ .+.-=+.+..+++|+...- ..+. ..-..+++|-|..+...+|..+.+.
T Consensus 69 ------------------~~~~~p~~~g-~i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~ 128 (444)
T COG5277 69 ------------------LELRYPIENG-IILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128 (444)
T ss_pred ------------------ceeecccccC-ccCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHH
Confidence 0011111111 1111123344555554432 1111 2234699999999999998877665
Q ss_pred H-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEec
Q psy7891 184 G-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGY 262 (929)
Q Consensus 184 a-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~ 262 (929)
+ +...+..+.+...+.+++++.+.. ..+.+|+|+|.+.|+|+=|. .| +.+.....
T Consensus 129 ~fE~~~vp~~~~~~~~~l~~ya~g~~---------~~~g~ViD~G~~~t~v~PV~--------DG-------~~l~~a~~ 184 (444)
T COG5277 129 LFETLNVPALYLAIQAVLSLYASGSS---------DETGLVIDSGDSVTHVIPVV--------DG-------IVLPKAVK 184 (444)
T ss_pred HHHhcCCcceEeeHHHHHHHHhcCCC---------CCceEEEEcCCCceeeEeee--------cc-------ccccccce
Confidence 5 444555555555555555444321 24789999999999988654 24 22222233
Q ss_pred CCCcchHHHHHHHHHHHHHH
Q psy7891 263 DRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 263 d~~lGG~~~D~~l~~~l~~~ 282 (929)
...+||++++..|.+.|...
T Consensus 185 ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 185 RIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred eeecCcHHHHHHHHHHHhhc
Confidence 45699999999999988874
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=102.18 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=59.8
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
..-+|.+|-..+-+-+.-....+.+.|++.+. ..++.|.++||+++.|.+.+++.+.||.++...-+ .|+.++|||+
T Consensus 360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHH
Confidence 34467666554444333333334445554431 24678999999999999999999999988855544 5788999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.+
T Consensus 437 ~a~~a~G~~ 445 (465)
T TIGR02628 437 FGFYGVGEY 445 (465)
T ss_pred HHHHhcCcc
Confidence 998766543
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.9e-05 Score=92.37 Aligned_cols=273 Identities=16% Similarity=0.176 Sum_probs=155.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHhhcc--------------cccceEEEEecCCCCHHHHHHHHHHHHHc--------CCc-
Q psy7891 134 ELYHVEELVAMLLHKAREYASVSAG--------------QVINEAVIIVPGYFNQIERQSMLKAGELA--------GLK- 190 (929)
Q Consensus 134 ~~~~~eel~a~~L~~lk~~a~~~~~--------------~~v~~~VItVPa~f~~~qR~al~~Aa~~A--------Gl~- 190 (929)
-.||=..+++++|..+.-+|-.+.+ ...+.+++|||......+|+.++++++.| |+.
T Consensus 415 p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~ 494 (1002)
T PF07520_consen 415 PHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHP 494 (1002)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3577778888888888877754432 33568999999999999999888888754 532
Q ss_pred --------------------EEEEechhHHHHHHhcc------------------cccccC-----CCCCCcEEEEEEcC
Q psy7891 191 --------------------VLQLMNDYTAVALNYGI------------------FKRKDF-----NETNPVHVMFYDMG 227 (929)
Q Consensus 191 --------------------~~~li~EptAAAl~y~~------------------~~~~~~-----~~~~~~~vlv~D~G 227 (929)
+.-=-+|.|+.=+-|.+ .+.... .....-+|.-+|+|
T Consensus 495 ~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIG 574 (1002)
T PF07520_consen 495 WDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIG 574 (1002)
T ss_pred CCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecC
Confidence 11112333333222211 111111 11124578999999
Q ss_pred CceEEEEEEEEEeeccccCCcccCCCcEEEE----EEecCCCcchHHHHHHH-HHHHHHHhhhhcc-c------------
Q psy7891 228 AWSTTVSIVSYQVVKTKERGFVETHPQVSVL----GVGYDRTLGGLEMQIRL-RDFLGKKFNEMKK-T------------ 289 (929)
Q Consensus 228 ggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~----~~~~d~~lGG~~~D~~l-~~~l~~~f~~~~~-~------------ 289 (929)
|||||..|-.|..... .| ....+. -..| -.+.|+||=..+ ..++...+....+ .
T Consensus 575 GGTTDL~It~Y~ld~G--~g-----~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~L 646 (1002)
T PF07520_consen 575 GGTTDLMITQYRLDDG--QG-----SNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRL 646 (1002)
T ss_pred CCcceeeEEEEEeccC--Cc-----ceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHH
Confidence 9999999999874431 12 122221 1222 357888886544 4555555443211 0
Q ss_pred -CCCccCC-HH-------------HHHHHHHHHHHhhhhccCCCceeEEEeec---------------------------
Q psy7891 290 -TKDVFEN-PR-------------AVAKLFKEAGRLKNVLSANNEHFAQIEGL--------------------------- 327 (929)
Q Consensus 290 -~~d~~~~-~~-------------~~~kL~~~aek~K~~LS~~~~~~v~ie~l--------------------------- 327 (929)
+.+-... .+ ...+++.+||..=.. +........+..+
T Consensus 647 fG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~ 725 (1002)
T PF07520_consen 647 FGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPD 725 (1002)
T ss_pred hCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCC
Confidence 1110000 00 122355555553211 0111111111111
Q ss_pred ccCcceEEEEeHHHHHHHHH---HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc------
Q psy7891 328 IDEIDFKLLVTRAEFEALNE---DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL------ 398 (929)
Q Consensus 328 ~~~~d~~~~itR~efe~l~~---~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i------ 398 (929)
++=.|+.+.|+..++...+. -.+..+...+-+++..- +-|-|+|+|=-||+|.||.+++......+
T Consensus 726 Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l 800 (1002)
T PF07520_consen 726 FDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPL 800 (1002)
T ss_pred cceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEec
Confidence 11134568899999888664 44444444444444433 45689999999999999999999976322
Q ss_pred --------------CCCCCchHHHHhhHHHHHHhhc
Q psy7891 399 --------------SKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 399 --------------~~~~n~deaVA~GAa~~aa~~s 420 (929)
.+--||...||.||.+++....
T Consensus 801 ~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 801 HGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred CCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 2335899999999988776554
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-06 Score=97.04 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=57.9
Q ss_pred EEEeHHHHHHHHHHHH-hHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 335 LLVTRAEFEALNEDLF-DRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 335 ~~itR~efe~l~~~l~-~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
..-+|.++-..+-+-+ -.+...++ .|++.+ ...++.|.++||++|.+.+.+++.+.||.++...- ..|++++|||
T Consensus 356 ~~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA 431 (470)
T PRK10331 356 LNTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAA 431 (470)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHH
Confidence 3446776654433322 23333333 344332 12578999999999999999999999998885444 4578899999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.|
T Consensus 432 ~la~~~~G~~ 441 (470)
T PRK10331 432 MFGWYGVGEF 441 (470)
T ss_pred HHHHHhcCCC
Confidence 9998766544
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.6e-06 Score=96.04 Aligned_cols=81 Identities=25% Similarity=0.174 Sum_probs=54.3
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.-+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+...+++.+.||.++.... ..|+.+.|+|+
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~-~~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVPE-VEEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEecC-cccchHHHHHH
Confidence 34677776655544444444444555544 43 566899999999999999999999998876444 34555555555
Q ss_pred HHHhhc
Q psy7891 415 KAADLS 420 (929)
Q Consensus 415 ~aa~~s 420 (929)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555444
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-05 Score=93.30 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=56.9
Q ss_pred eHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-..+ +.+.-.+...+....+..+. .++.|.++||+++.+.+.+++.+.||.++...-++ |+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 456554432 33333344444433332343 57899999999999999999999999888555544 68899999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.+
T Consensus 447 ~~~~G~~ 453 (505)
T TIGR01314 447 LKALGLI 453 (505)
T ss_pred HHhcCcc
Confidence 8766543
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=85.69 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=56.7
Q ss_pred EeHHHHHHHH-HHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALN-EDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~-~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
-+|.++-..+ +.+.-.+...+ +.|+. .+. .++.|.++||++|.+.+.+++.+.||.++.. ....|+.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~-~~~~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVER-PVVAETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEe-cCcccchHHHHHH
Confidence 3466554433 33333344444 33442 344 4778999999999999999999999988854 3456789999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.|
T Consensus 447 ~A~~~~G~~ 455 (498)
T PRK00047 447 LAGLAVGFW 455 (498)
T ss_pred HHhhhcCcC
Confidence 998766543
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=86.83 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.2
Q ss_pred eHHHHHHHHH-HHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 338 TRAEFEALNE-DLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 338 tR~efe~l~~-~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
+|.++-..+- .+.-.+...+ +.|++ .+. .++.|.++||+++.+.+.+++.+.||.++...- ..|+.++|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVI-ESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHH
Confidence 5666544332 3333333333 33333 344 377899999999999999999999998875444 556889999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.|
T Consensus 451 aa~a~G~~ 458 (504)
T PTZ00294 451 AGLAVGVW 458 (504)
T ss_pred HHhhcCcc
Confidence 98766543
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00075 Score=72.70 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=41.3
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhCCccC-CCCCchHHHHhhHHHHHHh
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVGVELS-KNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~~~i~-~~~n~deaVA~GAa~~aa~ 418 (929)
.|+|+||.++.|.+++.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 242 ~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 242 GFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 589999999999999999999997665 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00031 Score=83.26 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=57.9
Q ss_pred EEeHHHHHHHHH-HHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 336 LVTRAEFEALNE-DLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 336 ~itR~efe~l~~-~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
.-+|.++-..+- .+.-.+...+ +.|+.. +. .++.|.++||++|.+.+.+++.+.||.++.. .+..|+.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHH
Confidence 335666655433 3333333333 344432 43 4788999999999999999999999988855 445678899999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.|
T Consensus 442 ~~a~~~~G~~ 451 (493)
T TIGR01311 442 YAAGLAVGYW 451 (493)
T ss_pred HHHHhhcCcC
Confidence 9998766543
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-05 Score=87.94 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred EeHHHHHHHHH-HHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALNE-DLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~~-~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
-++.++-..+- .+.-.+...+ +.|++. +. .++.|.++||++|.+.+.+++.+.||.++...- ..|+.++|||+
T Consensus 359 ~~~~~l~railEgia~~~~~~~-~~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~ 433 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSL-DILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAI 433 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHH
Confidence 34666544333 3333333333 344433 23 478999999999999999999999998775544 66789999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.|
T Consensus 434 ~a~~~~g~~ 442 (481)
T TIGR01312 434 LAAWALGEK 442 (481)
T ss_pred HHHHhcCCC
Confidence 998776543
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00047 Score=82.07 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=44.9
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.++.|.++||+++.|.+.+++.+.||.++.. .+..|+.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~-~~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVR-PADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEe-cCccccHHHHHHHHHHhhcCcC
Confidence 5788999999999999999999999988844 4456789999999998766543
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=85.36 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=60.7
Q ss_pred EEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 336 ~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
.-+|.+|-+.+-+-+.-....+-+.|+..+. .++.|+++||+ ++.+.+.+++.+.||.++....++ |+.++|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 3467776655544333333334445555554 57899999999 999999999999999888666554 688999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.+
T Consensus 480 lA~~~~G~~ 488 (536)
T TIGR01234 480 FAAVAAGVY 488 (536)
T ss_pred HHHHHcCCc
Confidence 998766543
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=78.64 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEE
Q psy7891 143 AMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVM 222 (929)
Q Consensus 143 a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vl 222 (929)
..|.+|+...-... ......+++|-|..+...-|+.+.+..=. -|++-.+.=..-| .+ |+.. -.+=+
T Consensus 82 e~iw~~if~~~L~~-~Pee~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~qa-vl-ya~g---------~ttG~ 148 (372)
T KOG0676|consen 82 EKIWHHLFYSELLV-APEEHPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAIQA-VL-YASG---------RTTGL 148 (372)
T ss_pred HHHHHHHHHHhhcc-CcccCceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHHHH-HH-HHcC---------CeeEE
Confidence 55666665211111 11235799999999999999888765422 2344333322222 22 5433 34569
Q ss_pred EEEcCCceEEEE-EEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 223 FYDMGAWSTTVS-IVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 223 v~D~GggT~dvs-vv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
|+|+|.|-+.+. |+. | +.+...-....+||++++.-|...|.+
T Consensus 149 VvD~G~gvt~~vPI~e---------G-------~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 149 VVDSGDGVTHVVPIYE---------G-------YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred EEEcCCCceeeeeccc---------c-------cccchhhheecccchhhHHHHHHHHHh
Confidence 999999977543 433 5 334444455679999999877777766
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0022 Score=71.88 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=42.7
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHH
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa 417 (929)
.|+++||.++.+.+.+.+.+.+|.++..+.+|..+.|+|||++|.
T Consensus 358 ~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 358 PVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred cEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 499999999999999999999998898999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0046 Score=67.65 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHhHHHHHHHH-HHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 343 EALNEDLFDRVGYPVEQ-ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 343 e~l~~~l~~~i~~~i~~-~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
|+++..+...+..-+.. +++.- ++.+. |+|+||.+....|.+.+.+.+|.++..+.+|.-.-|.|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~--~i~~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRV--DIEEP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCCCC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 44555544444333322 44433 23332 999999999999999999999999999999999999999999863
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=81.91 Aligned_cols=190 Identities=11% Similarity=0.084 Sum_probs=101.1
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHH--------HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEE
Q psy7891 162 NEAVIIVPGYFNQIERQSMLKAGE--------LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTV 233 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa~--------~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dv 233 (929)
.-.+||.....-++-++.+..+.. .||+++..++. |-|++.+.... . . ...++++|+|||||++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E-----k-e~gVa~IDIGgGTT~i 160 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E-----R-NTRVLNIDIGGGTANY 160 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h-----c-cCceEEEEeCCCceEE
Confidence 346777766544444444333211 26776666666 77777655422 1 2 6889999999999999
Q ss_pred EEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc-CCHHHHHHHHHHHHHhhh
Q psy7891 234 SIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF-ENPRAVAKLFKEAGRLKN 312 (929)
Q Consensus 234 svv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~-~~~~~~~kL~~~aek~K~ 312 (929)
+++. .| . +.. .....+||+.+... . .+ .+. -.| ...+|++.+ -.
T Consensus 161 aVf~--------~G------~--l~~-T~~l~vGG~~IT~D----------~---~~-~i~yis~-~~~~l~~~~---~~ 205 (475)
T PRK10719 161 ALFD--------AG------K--VID-TACLNVGGRLIETD----------S---QG-RVTYISP-PGQMILDEL---GL 205 (475)
T ss_pred EEEE--------CC------E--EEE-EEEEecccceEEEC----------C---CC-CEEEECh-HHHHHHHHc---CC
Confidence 9987 24 1 222 23357899865421 0 00 011 112 122332221 11
Q ss_pred hccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHH-------HHHHc-CCC-CCCccEEEEEcCCcCC
Q psy7891 313 VLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQ-------ALKSS-AVP-MDVISQVILVGAGTRV 383 (929)
Q Consensus 313 ~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~-------~L~~a-~~~-~~~I~~ViLvGG~sri 383 (929)
.++. --.++.+++..+|..+.+-+.+.|.. .|-.. .+. ...++.|.+.||-+..
T Consensus 206 ~~~~-----------------G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 206 AITD-----------------GRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred Cccc-----------------cccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 1111 12466788888888777666665541 11111 222 3578999999997654
Q ss_pred HHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 384 PKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 384 P~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
-|-+ ...+ ..--.|--+-+|.|+.....
T Consensus 269 iy~~-~~~~-------~f~yGDiG~lLg~ai~~~~~ 296 (475)
T PRK10719 269 IYRH-QPAD-------PFRYGDIGPLLATALHEHPR 296 (475)
T ss_pred eecC-CcCC-------ccccCcHHHHHHHHHhhChh
Confidence 3221 1111 11234556667776665433
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.01 Score=63.28 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred EEEEEcCCcCCHHHHHHHHHHhC-Cc----cCCCCCchHHHHhhHHHHH
Q psy7891 373 QVILVGAGTRVPKVQEKITKVVG-VE----LSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 373 ~ViLvGG~sriP~v~~~l~~~f~-~~----i~~~~n~deaVA~GAa~~a 416 (929)
.|+|.||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999995 23 4456688899999999875
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0069 Score=69.70 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=53.8
Q ss_pred ceEEEEeHHHHHHHHHHH---HhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc----------
Q psy7891 332 DFKLLVTRAEFEALNEDL---FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL---------- 398 (929)
Q Consensus 332 d~~~~itR~efe~l~~~l---~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---------- 398 (929)
|+.+.|.-.++++.+-.. +......+-+++.. -+-|.++|+|--+|.|.||..++......+
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344566666666654432 22222222223221 245679999999999999999988765221
Q ss_pred ----------CCCCCchHHHHhhHHHHHHhhc
Q psy7891 399 ----------SKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 399 ----------~~~~n~deaVA~GAa~~aa~~s 420 (929)
.+--||...+|.||.+++..+.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 2335899999999988876544
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=67.19 Aligned_cols=188 Identities=20% Similarity=0.174 Sum_probs=96.5
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
+..|..+...=-|+.+|.+....... . +..+.|+||||||||++++.-. | .+.-+..+|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----t-~~PlaIlDmG~GSTDAsii~~~-------g------~v~~iHlAG-- 164 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----T-DKPLAILDMGGGSTDASIINRD-------G------EVTAIHLAG-- 164 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT--------SSEEEEEE-SSEEEEEEE-TT-------S-------EEEEEEE---
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----C-CCCeEEEecCCCcccHHHhCCC-------C------cEEEEEecC--
Confidence 45688888788899998887654432 1 6779999999999999998722 4 455544443
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCce---------eEE-Eee--------
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEH---------FAQ-IEG-------- 326 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~---------~v~-ie~-------- 326 (929)
.|+-++..|...|- + ++ +.-||..|+---+.-+. .+. ++.
T Consensus 165 --AG~mVTmlI~sELG------------l--~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~fa 222 (332)
T PF08841_consen 165 --AGNMVTMLINSELG------------L--ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFA 222 (332)
T ss_dssp --SHHHHHHHHHHHCT---------------S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTT
T ss_pred --CchhhHHHHHHhhC------------C--CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHee
Confidence 35555555543321 0 01 11244554421110000 000 000
Q ss_pred ---cccCcceEEEE----eHHHHHHHHHHHHhHH-HHHHHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-
Q psy7891 327 ---LIDEIDFKLLV----TRAEFEALNEDLFDRV-GYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG- 395 (929)
Q Consensus 327 ---l~~~~d~~~~i----tR~efe~l~~~l~~~i-~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~- 395 (929)
+.. .+--+.| +-++...+=...-+++ ..-..++|+.- .-...+|+.|+|+|||+-=.-|-++|.+.+.
T Consensus 223 Rvvi~~-~~~lvPi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~ 301 (332)
T PF08841_consen 223 RVVILK-EDGLVPIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSH 301 (332)
T ss_dssp SEEEEC-TTEEEEESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCT
T ss_pred EEEEec-CCceeecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhh
Confidence 000 1112222 2222222211111111 11223344432 2345689999999999998888888888774
Q ss_pred -------CccCCCCCchHHHHhhHHHHH
Q psy7891 396 -------VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 396 -------~~i~~~~n~deaVA~GAa~~a 416 (929)
..+.-..-|.-|||.|.++.-
T Consensus 302 y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 302 YGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp TT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred CcceeeccccccccCchHHHHHHHHHhh
Confidence 245556678899999998754
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0096 Score=66.93 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=84.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHhhccccc-----ceEEEEecCCCCHHHHHHHHH-HHHHcCCcEEEEechhHHHHHHhcc
Q psy7891 134 ELYHVEELVAMLLHKAREYASVSAGQVI-----NEAVIIVPGYFNQIERQSMLK-AGELAGLKVLQLMNDYTAVALNYGI 207 (929)
Q Consensus 134 ~~~~~eel~a~~L~~lk~~a~~~~~~~v-----~~~VItVPa~f~~~qR~al~~-Aa~~AGl~~~~li~EptAAAl~y~~ 207 (929)
..+|..++++.+-+-+.-...+.+..+. -.+|+-||-.|....-+-+.. -....||.-..++-|..||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3567777776654443333455555443 368999999999776554444 4466799999999999999877665
Q ss_pred cccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 208 FKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 208 ~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
. .-.|||||+-.|.++.|+ .|.. +..+.--...||.||++.++-++..
T Consensus 275 s-----------s~CVVdiGAQkTsIaCVE--------dGvs-------~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S-----------SACVVDIGAQKTSIACVE--------DGVS-------LPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-----------ceeEEEccCcceeEEEee--------cCcc-------ccCceEEeccCCchHHHHHHHHHHh
Confidence 3 347899999999999887 3521 1111222357999999999866654
|
|
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=69.66 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCC-cCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAG-TRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-..+-+-+.--...+-+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++.+.- ..|+.++|||+.|
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA 484 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFA 484 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHH
Confidence 56665443333222222333344444443 47789999999 9999999999999998774444 5678899999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 485 ~~~~G~ 490 (548)
T PRK04123 485 AVAAGA 490 (548)
T ss_pred HHHhcc
Confidence 876554
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.069 Score=61.42 Aligned_cols=225 Identities=15% Similarity=0.083 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCcE----EEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCC
Q psy7891 178 QSMLKAGELAGLKV----LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHP 253 (929)
Q Consensus 178 ~al~~Aa~~AGl~~----~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~ 253 (929)
....++|...||.. ..-+=+.-|.++.-+.- ..+-|++=+|-+||.+.+..-. .. -.|. -.+
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~---------~~~~l~~I~GTStC~m~~s~~~--~~-v~Gv--wGp 297 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA---------QPGSLAMIAGTSTCHMLLSEKP--RF-VPGV--WGP 297 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC---------CCCeEEEEeccceEEEEecCCc--ee-cCcc--ccc
Confidence 34567888888852 22222223333332211 1233455578888888775521 00 0120 011
Q ss_pred cEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhc-------ccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEee
Q psy7891 254 QVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMK-------KTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEG 326 (929)
Q Consensus 254 ~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~-------~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~ 326 (929)
....+-.++-..-||..-.-.|.+||.+...--. +.+.++. .....++..-+++++...+.... ...++.
T Consensus 298 y~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~ 374 (544)
T COG1069 298 YDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDW 374 (544)
T ss_pred cccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEeccc
Confidence 2223333333445888888889999887642200 0011111 12344455555666666544332 233443
Q ss_pred cccC------cceEEEE-------eHHHHHHHHHHH---HhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHH
Q psy7891 327 LIDE------IDFKLLV-------TRAEFEALNEDL---FDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKI 390 (929)
Q Consensus 327 l~~~------~d~~~~i-------tR~efe~l~~~l---~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l 390 (929)
++++ .+++-.| +.+.+-.+..-+ +.-=...|-+++++.|+ .|+.|++.||-.+.|.+.+++
T Consensus 375 f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~ 451 (544)
T COG1069 375 FNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLY 451 (544)
T ss_pred ccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHH
Confidence 3322 2233222 333222222222 22223456667777777 688999999999999999999
Q ss_pred HHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 391 TKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 391 ~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.+..|..+... ..++++++|+|+.||.-.+.|
T Consensus 452 aDvtg~~v~i~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 452 ADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred HHhcCCeEEee-cccchhhhHHHHHHHHHhccC
Confidence 99999766555 678999999999999777543
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0049 Score=63.50 Aligned_cols=48 Identities=29% Similarity=0.398 Sum_probs=42.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
.++.|+++||.++.|.+.+++.+.||.++...-+ .|+.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999987755554 89999999999974
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.061 Score=59.91 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=40.1
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhC-----CccCCCCCchHHHHhhHHHHH
Q psy7891 372 SQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 372 ~~ViLvGG~sriP~v~~~l~~~f~-----~~i~~~~n~deaVA~GAa~~a 416 (929)
..|+|+||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999995 456778899999999999875
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.1 Score=56.67 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=42.1
Q ss_pred CccEEEEEc-CCcCCHHHHHHHHHHh---CCccCCCCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVG-AGTRVPKVQEKITKVV---GVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvG-G~sriP~v~~~l~~~f---~~~i~~~~n~deaVA~GAa~~aa 417 (929)
.+..|+++| |.++.|.+++.+.+++ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 46777888999999999999875
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.087 Score=60.16 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=100.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEe---chhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAGELAGLKVLQLM---NDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li---~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.++||==+--.++.|..+..-+..||==|+.-- -|..-|+-..|.... .......|+=+|+||||+.+++++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~---S~~~~~~V~NiDIGGGTtN~avf~-- 161 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL---SKEHHTVVANIDIGGGTTNIAVFD-- 161 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH---hhhhCCeEEEEEeCCCceeEEEEE--
Confidence 355665555566667777766677764333321 233323322221111 111167899999999999999987
Q ss_pred eeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCcc-CCHHHHHHHHHHHHHhhhhccCCC
Q psy7891 240 VVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVF-ENPRAVAKLFKEAGRLKNVLSANN 318 (929)
Q Consensus 240 ~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~-~~~~~~~kL~~~aek~K~~LS~~~ 318 (929)
.| ++++++. .++||+.|- |...+ .+. -.| ...+|++++ -..+...
T Consensus 162 ------~G--------~v~~T~c-l~IGGRLi~----------~d~~g----~i~yis~-~~~~l~~~~---~~~~~~G- 207 (473)
T PF06277_consen 162 ------NG--------EVIDTAC-LDIGGRLIE----------FDPDG----RITYISP-PIQRLLEEL---GLELSVG- 207 (473)
T ss_pred ------CC--------EEEEEEE-EeeccEEEE----------EcCCC----cEEEECH-HHHHHHHHh---CCCCCcc-
Confidence 24 4566554 579998431 21100 111 112 122333221 1111111
Q ss_pred ceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHH--------HHHc-CCC-CCCccEEEEEcCCcCCHHHHH
Q psy7891 319 EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQA--------LKSS-AVP-MDVISQVILVGAGTRVPKVQE 388 (929)
Q Consensus 319 ~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~--------L~~a-~~~-~~~I~~ViLvGG~sriP~v~~ 388 (929)
-.++.++++.+|+.+.+-+.+.|... |-.. .+. ...++.|.+.||-+..-|=+
T Consensus 208 ----------------~~~~~~~l~~i~~~Ma~~l~~~i~~~~~~~~~~~L~~~~~l~~~~~~~~v~fSGGVad~iy~~- 270 (473)
T PF06277_consen 208 ----------------DRADPEQLRKICRRMAELLVEVIGGKPLSPLAEELLTTPPLPDDYPIDAVTFSGGVADCIYRP- 270 (473)
T ss_pred ----------------ccCCHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCcCCCCCEEEEechHHHHhhCC-
Confidence 14677888888877666655554322 1111 222 35789999999965322211
Q ss_pred HHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 389 KITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 389 ~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
.......-.|--+-+|.|+......
T Consensus 271 -------~~~d~~~yGDIG~lLg~ai~~~~~~ 295 (473)
T PF06277_consen 271 -------EEADPFRYGDIGPLLGQAIRESPLL 295 (473)
T ss_pred -------CCCCccccCcHHHHHHHHHHhChhh
Confidence 1112223456667777777665443
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=69.46 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=61.5
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHH---HcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhh
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALK---SSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 411 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~---~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~G 411 (929)
..-+|..+..++.-+++-+.--++.+++ +.+. .++.|.++||+++.+.+.+++.+++|.++...- ..|+.++|
T Consensus 408 ~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alG 483 (541)
T TIGR01315 408 MDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPY-VNEAVLHG 483 (541)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecC-hhHHHHHH
Confidence 3446766666666666655544444444 3343 478899999999999999999999998885554 45688999
Q ss_pred HHHHHHhhcCC
Q psy7891 412 AVYKAADLSTG 422 (929)
Q Consensus 412 Aa~~aa~~s~~ 422 (929)
||+.|+.-.+.
T Consensus 484 aA~lA~~~~G~ 494 (541)
T TIGR01315 484 AAMLGAKAAGT 494 (541)
T ss_pred HHHHHHHhcCc
Confidence 99999866654
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.024 Score=68.01 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 369 DVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
..++.|+++||+++.+.+.+++.++||..+.+.- ..++.|+||||.|+.
T Consensus 444 ~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~-~~ea~alGAA~~A~~ 492 (556)
T PLN02669 444 VPPKRIIATGGASANQSILKLIASIFGCDVYTVQ-RPDSASLGAALRAAH 492 (556)
T ss_pred CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecC-CCCchHHHHHHHHHH
Confidence 3578999999999999999999999998775444 447889999999986
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.058 Score=63.33 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=58.7
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
..-+|.++-+.+-+-+.-....+-+.|+.. +. .++.|.++||++|.+.+.+++.+.+|.++... . .|+.++|||
T Consensus 354 ~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA 428 (454)
T TIGR02627 354 IPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNI 428 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHH
Confidence 344677765544433332333333444442 43 47789999999999999999999999888543 3 679999999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.+
T Consensus 429 ~~a~~~~G~~ 438 (454)
T TIGR02627 429 GVQLMALDEI 438 (454)
T ss_pred HHHHHhcCCc
Confidence 9998766654
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.077 Score=62.54 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=56.2
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHc-CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSS-AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-..+-+-+.-....+.+.|+.. +. .++.|.++||++|.+.+.+++.+++|.++.... .|+.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 566655444333332233333344432 33 467899999999999999999999998885433 379999999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766654
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.25 Score=57.34 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
++-+--++..+|+..-.+.+ ..|+.+.+.||.|+-|.+-+.+.+.+|.++.++.+.|- +++|||+.|+..++.+
T Consensus 393 leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 33444455555554444443 46778999999999999999999999999999999887 9999999999888763
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.08 Score=63.31 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=56.2
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-..+-+-+.-....+-+.+++ .+. .++.|.++||++|.+.+.+++.+.||.++...-+ .|+.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 56665544333332222333344444 244 4789999999999999999999999988865554 468899999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 876654
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.54 Score=48.86 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=110.6
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEe
Q psy7891 162 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~ 240 (929)
..+.+|-|+--....|..|.+.. +.-||.-+.+-- .|+.--|+.-- ..=+|+|-|-|-|-+.-|.-
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvai--QAVLtLYAQGL---------~tGvVvDSGDGVTHi~PVye-- 168 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAI--QAVLTLYAQGL---------LTGVVVDSGDGVTHIVPVYE-- 168 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehH--HHHHHHHHhcc---------cceEEEecCCCeeEEeeeec--
Confidence 36789999988888888776654 667887654432 34333454321 23378999999998775541
Q ss_pred eccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC---
Q psy7891 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN--- 317 (929)
Q Consensus 241 ~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~--- 317 (929)
| +..-.-.....+.|++++.-|.+.|..+=..- ....|.. .....|+.|..-
T Consensus 169 ------~-------~~l~HLtrRldvAGRdiTryLi~LLl~rGYaf-N~tADFE-----------TVR~iKEKLCYisYd 223 (389)
T KOG0677|consen 169 ------G-------FVLPHLTRRLDVAGRDITRYLIKLLLRRGYAF-NHTADFE-----------TVREIKEKLCYISYD 223 (389)
T ss_pred ------c-------eehhhhhhhccccchhHHHHHHHHHHhhcccc-ccccchH-----------HHHHHHhhheeEeec
Confidence 2 11111122345899999999998887652210 1111211 122233333211
Q ss_pred --------CceeEEEee--cccCcceEEEEeHHHHH---HHHHHHH-----hHHHHHHHHHHHHcCCCC--CCccEEEEE
Q psy7891 318 --------NEHFAQIEG--LIDEIDFKLLVTRAEFE---ALNEDLF-----DRVGYPVEQALKSSAVPM--DVISQVILV 377 (929)
Q Consensus 318 --------~~~~v~ie~--l~~~~d~~~~itR~efe---~l~~~l~-----~~i~~~i~~~L~~a~~~~--~~I~~ViLv 377 (929)
-++++-+++ |-++. .+++--+.|| .+++|.+ ..+.+++-++++.+.++. +--.+|+|.
T Consensus 224 ~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLS 301 (389)
T KOG0677|consen 224 LELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLS 301 (389)
T ss_pred hhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeec
Confidence 122333333 22332 3455556665 4555432 234556666666665432 234689999
Q ss_pred cCCcCCHHHHHHHHHHhC
Q psy7891 378 GAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 378 GG~sriP~v~~~l~~~f~ 395 (929)
||++--|.+-..|.+.+.
T Consensus 302 GGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 302 GGSTMYPGLPSRLEKELK 319 (389)
T ss_pred CCcccCCCCcHHHHHHHH
Confidence 999999999888877664
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.15 Score=57.22 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=46.6
Q ss_pred CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 365 AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 365 ~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
|.....-..|+++||.||-..|-+.|.+.||..+..- ...+++++|+||.|+.-
T Consensus 437 g~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 437 GFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred cCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHHH
Confidence 5555677899999999999999999999999777544 88899999999998753
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.19 Score=55.10 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHH
Q psy7891 346 NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 346 ~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~ 414 (929)
++-..+++.+.|+......+..+.+. .++.+||.+ |++-..|.+.+| ..+..+..+.-+-|.||++
T Consensus 217 ~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 217 VRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 33344445555555544446544432 345556665 777788888888 5666666678888999875
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=93.43 E-value=1.8 Score=46.85 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=39.0
Q ss_pred CCccEEEEEcC-CcCCHHHHHHHHHHhC---CccCCCCCchHHHHhhHHH
Q psy7891 369 DVISQVILVGA-GTRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 369 ~~I~~ViLvGG-~sriP~v~~~l~~~f~---~~i~~~~n~deaVA~GAa~ 414 (929)
..+..|+++|| .+..|.+++.+...+. .+....-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 35789999999 6778999999998886 4667778899999999985
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.2 Score=47.18 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=26.7
Q ss_pred EEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcc--hHHHH--HHHHHHHH
Q psy7891 221 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLG--GLEMQ--IRLRDFLG 280 (929)
Q Consensus 221 vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lG--G~~~D--~~l~~~l~ 280 (929)
|+++|+|++++.+.+++.. . ...+.+++.+.....| |..|. ..+..-|.
T Consensus 1 i~~iDiGs~~~~~~i~~~~--~---------~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG--S---------DGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT--E---------EEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeC--C---------CCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999842 1 2256677655333322 55555 55554443
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.71 Score=52.78 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred CcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHH
Q psy7891 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKIT 391 (929)
Q Consensus 330 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~ 391 (929)
+..-.+.||..+.+++.. --.-+..-++-+|++++++.+||+.|+|.||+.+-=-+++.+.
T Consensus 288 ~~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 344568899999876532 2234556677888999999999999999999988777766653
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.6 Score=52.01 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.+..+-...|+++ ++|+...=|.+.| |...... . ....+|+|+|||+|.++++.
T Consensus 101 fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~---~-~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 101 FLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP---E-KGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC---C-CCCeEEEEeCCCeEEEEEec
Confidence 3444455679997 7777776666655 5544332 1 35689999999999999986
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.2 Score=51.03 Aligned_cols=124 Identities=19% Similarity=0.150 Sum_probs=70.5
Q ss_pred eeHHHHHHHHHHHHHHHHHhhccccc-ceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccC
Q psy7891 136 YHVEELVAMLLHKAREYASVSAGQVI-NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDF 213 (929)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~v-~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~ 213 (929)
++--+++..+|.|+....--. +..| ..+++|-+..=...+|+.|.+-. +.-|+.-+.+=-+.. |.+.+..
T Consensus 91 vtNwel~E~ilDY~F~~LG~~-~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~hN~-- 162 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFGKLGVD-GQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYHNY-- 162 (645)
T ss_pred cccHHHHHHHHHHHHHhcCCC-ccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhhcc--
Confidence 444456666777765543211 1123 35788888777777888877665 556887554422211 1111111
Q ss_pred CCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 214 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 214 ~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
........||+++|..+|-|-.|- .| .. ++....-.++||...-.-|.++|.-+
T Consensus 163 ~~~~~~~~liis~g~~~T~vipvl--------dG------~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 163 GKSSNKSGLIISMGHSATHVIPVL--------DG------RL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred CcccCcceEEEecCCCcceeEEEe--------cC------ch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 111134689999999999887654 25 22 23334456799988765555555443
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.94 E-value=6 Score=43.59 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=28.3
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
.|+++ .+.|+..|+|++-.+..... . ..+++++.+|.| +-.+++
T Consensus 96 ~~~pv-~~~NDa~aaA~aE~~~g~~~---~-~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNREV-RLANDANCLAVSEAVDGAAA---G-KQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCCE-EEccchhHHHHHHHHhcccC---C-CCcEEEEEEccc-eEEEEE
Confidence 47864 79999999998764432211 2 567888888865 333443
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.32 Score=50.63 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEE
Q psy7891 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 225 (929)
Q Consensus 146 L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D 225 (929)
..+|.+..+...+.++ .|+++-..|... .++.+--.. ||| +|...-+.-.... +..++++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAa-NW~Ata~~~~e~~-~dsci~VD 136 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAA-NWVATARFLAEEI-KDSCILVD 136 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHh-hhHHHHHHHHHhc-CCceEEEe
Confidence 3456666666666555 788888888664 222211111 111 1211111100011 57799999
Q ss_pred cCCceEEEEEEE
Q psy7891 226 MGAWSTTVSIVS 237 (929)
Q Consensus 226 ~GggT~dvsvv~ 237 (929)
||+.|+|+-=+.
T Consensus 137 ~GSTTtDIIPi~ 148 (330)
T COG1548 137 MGSTTTDIIPIK 148 (330)
T ss_pred cCCcccceEeec
Confidence 999999987554
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=29 Score=38.10 Aligned_cols=43 Identities=14% Similarity=-0.096 Sum_probs=28.5
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
.|+++ .+.|+..|+|++-...... . ..+++++.+|.| .-.+++
T Consensus 104 ~~~pv-~v~NDa~aaa~~E~~~~~~----~-~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCPV-FFSRDVNLQLLWDVKENNL----T-QQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCCE-EEcchHhHHHHHHHHhcCC----C-CceEEEEEecCc-eEEEEE
Confidence 47764 8999999998865433221 2 468888888877 344444
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.4 Score=47.59 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.0
Q ss_pred CcEEEEEEcCCceEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~ 237 (929)
...|+=+|+||||+..+++.
T Consensus 144 ~t~v~NlDIGGGTtN~slFD 163 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFD 163 (473)
T ss_pred ceEEEEEeccCCccceeeec
Confidence 56789999999999999986
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=90.04 E-value=3 Score=45.05 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=56.4
Q ss_pred cceEEEEecCCCCHHHHHH-HHHHHHHcCCcEEEEechhHHHHHHhc---ccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 161 INEAVIIVPGYFNQIERQS-MLKAGELAGLKVLQLMNDYTAVALNYG---IFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 161 v~~~VItVPa~f~~~qR~a-l~~Aa~~AGl~~~~li~EptAAAl~y~---~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
-.++|+|-|.+--+.-... ..--.+.-++. .+..-+.|+.+++- ..+....+. +....||+|.|.+-|-+.-+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd--~v~kttaa~lva~~~~~~~ne~~tt~-~~~c~lVIDsGysfThIip~ 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFD--AVLKTTAAVLVAFTKYVRNNEDSTTT-SSECCLVIDSGYSFTHIIPV 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccc--eEeecCHHHhcchhhhccCCcccccc-ccceEEEEeCCCceEEEehh
Confidence 3578999998765543333 33333444554 34444444444443 222222222 26699999999998876533
Q ss_pred EEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHH
Q psy7891 237 SYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLG 280 (929)
Q Consensus 237 ~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~ 280 (929)
- .|. ...+ +.- ...+||..++..|.+++-
T Consensus 170 v--------~g~----~~~q--aV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 V--------KGI----PYYQ--AVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred h--------cCc----chhh--ceE-EeecchHHHHHHHHHHhh
Confidence 2 131 1111 111 246999999998888774
|
|
| >PTZ00288 glucokinase 1; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=9.1 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.5
Q ss_pred ccCCeEEEEEcCccceEEEEEECC
Q psy7891 22 SYGIAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 22 ~~~~~vvGID~GTt~s~va~~~~g 45 (929)
+....++|+|+|.||+++++++..
T Consensus 23 ~~~~~~~~~DiGgt~~R~~~~~~~ 46 (405)
T PTZ00288 23 SSGPIFVGCDVGGTNARVGFAREV 46 (405)
T ss_pred ccCCeEEEEEecCCceEEEEEecc
Confidence 345679999999999999999764
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=89.07 E-value=6.4 Score=43.61 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=39.1
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCcc---CCCCCc----hHHHHhhHHHHHHhhcCC
Q psy7891 369 DVISQVILVGAGTRVPKVQEKITKVVGVEL---SKNLNT----DEAAALGAVYKAADLSTG 422 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP~v~~~l~~~f~~~i---~~~~n~----deaVA~GAa~~aa~~s~~ 422 (929)
.+.+.|+|.|-.+|+|-+.+.+.+.|+... ...+.+ -..+|.|||+.|.-+.++
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 467889999999999999888888875211 112222 234899999999888764
|
The function of this family is unknown. |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=88.73 E-value=23 Score=39.19 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhh--cccccceEEEEecCCCCHHH------------HHHHHHHH-HHcCCcEEEEechhHHHH
Q psy7891 138 VEELVAMLLHKAREYASVS--AGQVINEAVIIVPGYFNQIE------------RQSMLKAG-ELAGLKVLQLMNDYTAVA 202 (929)
Q Consensus 138 ~eel~a~~L~~lk~~a~~~--~~~~v~~~VItVPa~f~~~q------------R~al~~Aa-~~AGl~~~~li~EptAAA 202 (929)
+++++..+...+.+..+.. ...++..+.|++|..++... .-.+.+.. +..|+++ .+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv-~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPV-VVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCE-EEechHHHHH
Confidence 4455555555555544332 12356677888887554221 11233333 3347764 7999999999
Q ss_pred HHhcccccccCCCCCCcEEEEEEcCCceEEEEEE
Q psy7891 203 LNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIV 236 (929)
Q Consensus 203 l~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv 236 (929)
++-.+..... . .++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~---~-~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGK---G-ARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccC---C-CCcEEEEEeCCcc-EEEEE
Confidence 8765433221 2 5678889999876 55554
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.2 Score=46.63 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=50.2
Q ss_pred eeeHHHH--HHHHHHHHHHHHHhhcccccceEE-EEecCCCCHHHHH-----HHHHHH-HHcCCcEEEEechhHHHHHHh
Q psy7891 135 LYHVEEL--VAMLLHKAREYASVSAGQVINEAV-IIVPGYFNQIERQ-----SMLKAG-ELAGLKVLQLMNDYTAVALNY 205 (929)
Q Consensus 135 ~~~~eel--~a~~L~~lk~~a~~~~~~~v~~~V-ItVPa~f~~~qR~-----al~~Aa-~~AGl~~~~li~EptAAAl~y 205 (929)
.++++-+ +-..|+..++.+..+ .+.++. ++ |..-|+ .+.+.. +..|+++ .+|+...=|.+.|
T Consensus 31 ~i~~e~i~r~~~~L~~f~~~~~~~---~v~~i~~vA-----TsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~ 101 (285)
T PF02541_consen 31 RISEEAIERAIDALKRFKEILKDY---GVEKIRAVA-----TSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSF 101 (285)
T ss_dssp SB-HHHHHHHHHHHHHHHHHHHHT---TGSEEEEEE-----EHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHC---CCCEEEEEh-----hHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHH
Confidence 3444433 334556666565544 344432 22 344443 344444 5569987 6777666555554
Q ss_pred -cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 206 -GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 206 -~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
|..... .. ....+++|+|||+|.+++++
T Consensus 102 ~gv~~~l---~~-~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 102 LGVLSSL---PP-DKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHS---TT-TSSEEEEEEESSEEEEEEEE
T ss_pred HHHHhhc---cc-cCCEEEEEECCCceEEEEEE
Confidence 333222 12 56789999999999999886
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=88.65 E-value=2.1 Score=49.59 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCCCCccEEEEEcCC-cCCHHHHHHHHHHhC
Q psy7891 365 AVPMDVISQVILVGAG-TRVPKVQEKITKVVG 395 (929)
Q Consensus 365 ~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f~ 395 (929)
|.+...++.|+-+||. ++.|.-.++|...+.
T Consensus 380 GkDL~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 380 GKDLTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred CcccccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 4445578899999997 788887777777764
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=2.7 Score=51.78 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+..+ . ..+++++++.+.+.+++++.||++. ...+++.+
T Consensus 569 akN~lEs~iy~~r~~l~e~---~---------~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k 621 (663)
T PTZ00400 569 AKNEAETLIYSVEKQLSDL---K---------DKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDK 621 (663)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3444455555555555321 1 4688899999999999999999752 24799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|+..+.+++.++
T Consensus 622 ~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 622 TKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=20 Score=48.08 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCccEEEEEcCCc-CCHHHHHHHHHHhC------CccCCCCCchHHHHhhHHHHH
Q psy7891 369 DVISQVILVGAGT-RVPKVQEKITKVVG------VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 369 ~~I~~ViLvGG~s-riP~v~~~l~~~f~------~~i~~~~n~deaVA~GAa~~a 416 (929)
.+|+.|+++|++- .-|...+.|..++. .+...--+....-|+||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 4788999999954 48999888877653 233344456678889987643
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=3.1 Score=51.03 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...|...+..++..+..+ . ..+++++++.+.+.+++++.||++. ...+++.|
T Consensus 528 akN~le~~i~~~~~~l~~~---~---------~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k 580 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKEL---G---------DKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAK 580 (627)
T ss_pred HHHHHHHHHHHHHHHHHHH---h---------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3344556666666665421 1 4688999999999999999999753 34899999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|+..+++++.++
T Consensus 581 ~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 581 TEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=86.60 E-value=5.1 Score=40.81 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEechhHHHHH
Q psy7891 175 IERQSMLKAGELAGLKVLQLMNDYTAVAL 203 (929)
Q Consensus 175 ~qR~al~~Aa~~AGl~~~~li~EptAAAl 203 (929)
...+.+..+++.|||++..++-+|.|++.
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 46778889999999999999999998874
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >PTZ00107 hexokinase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=25 Score=41.20 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH----HHcCCCCCCccEEEEEcCC--cCCHHHHHHHHHHhC----Cc--cCCCCCchH
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQAL----KSSAVPMDVISQVILVGAG--TRVPKVQEKITKVVG----VE--LSKNLNTDE 406 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L----~~a~~~~~~I~~ViLvGG~--sriP~v~~~l~~~f~----~~--i~~~~n~de 406 (929)
+.-+..+|.-+..|...++.-.+ ...+.. .-..++-+-|| -..|..++.+.+++. .. ...-.-.+.
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~--~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV--QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 33445566666666655544333 322321 12244555555 347777777776664 11 122234666
Q ss_pred HHHhhHHHHHHhhc
Q psy7891 407 AAALGAVYKAADLS 420 (929)
Q Consensus 407 aVA~GAa~~aa~~s 420 (929)
..-+|||+.||...
T Consensus 448 GSg~GAAl~AA~~~ 461 (464)
T PTZ00107 448 GSGKGAAIIAAMVA 461 (464)
T ss_pred chHHHHHHHHHHhc
Confidence 88999999999765
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=84.35 E-value=4.8 Score=49.02 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...|..++..+..+ . ..+++++++.+.+.+++++.||+.. ...+++.+
T Consensus 526 ~kn~lEs~iy~~r~~l~~~------~------~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~ 578 (595)
T TIGR02350 526 ARNNADSLAYQAEKTLKEA------G------DKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAK 578 (595)
T ss_pred HHHHHHHHHHHHHHHHHHh------h------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3445566666666666431 1 5689999999999999999999753 22589999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|+..+++++.+.
T Consensus 579 ~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 579 TEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998653
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=84.34 E-value=13 Score=41.93 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=40.8
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC------ccCCCCCchHHHHhhHHHHHHhh
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV------ELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~------~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+..-+...|.+++.... ...+.|+++||+++-|++.+.|++.++. .+....+.-||++. |+.|...
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aF--A~La~~~ 339 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAF--AWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHH--HHHHHHH
Confidence 33334444555554332 2346899999999999999999999852 22233344455544 5666543
|
|
| >PRK05082 N-acetylmannosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=84.32 E-value=68 Score=35.00 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC-------ccCCCCCchHHHHhhHHHHHH
Q psy7891 348 DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV-------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 348 ~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~-------~i~~~~n~deaVA~GAa~~aa 417 (929)
.++++....+-.++...-. .-+.+.|+|-||.+..+.+.+.+++.+.. ++......+.+.++|||+.+.
T Consensus 212 ~~~~~~~~~la~~l~~l~~-~~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 212 ALINRSAQAIARLIADLKA-TLDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 3444444444444433210 11456788888777666555666655541 222333457788999998763
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=84.21 E-value=5.5 Score=44.23 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHHHHHHHHHHHHhcc
Q psy7891 793 NLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 793 ~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~i~~k~ 855 (929)
..+++++++.+.+.+++...||+... .. ...|.+.|.++|+..|++|+.|.
T Consensus 591 ~Kl~~edKe~~e~av~e~~eWL~~n~---~a---------~~Ee~~ek~kele~vv~Piiskl 641 (663)
T KOG0100|consen 591 GKLSDEDKETIEDAVEEALEWLESNQ---DA---------SKEEFKEKKKELEAVVQPIISKL 641 (663)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhhcc---cc---------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998752 22 34789999999999999999776
|
|
| >KOG1385|consensus | Back alignment and domain information |
|---|
Probab=84.09 E-value=2.7 Score=47.13 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=82.1
Q ss_pred eEEEEEcCccceEEEEEECCCceE----EeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPME----IALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~----iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
.++-||-|+|-|+|-++.-...+. .+..+-=+...|=.-+|. .+|......+..||...
T Consensus 68 Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfa---------------ddp~~aA~Sl~~LLd~A-- 130 (453)
T KOG1385|consen 68 YAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFA---------------DDPEEAANSLRPLLDVA-- 130 (453)
T ss_pred EEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccC---------------CChHHHHHhHHHHHHHH--
Confidence 468899999999999885332210 111110111222222332 23333444455555332
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+..+|...... --+.++..-|-...+.+-...+|..+++..++...-.+..-.++|
T Consensus 131 -------~~~vP~~~~~k----TPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI------------- 186 (453)
T KOG1385|consen 131 -------EAFVPREHWKK----TPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI------------- 186 (453)
T ss_pred -------HhhCCHhHhcc----CceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceee-------------
Confidence 22233221111 125555555567788888999999999988744322222111222
Q ss_pred HHHHHcCCcEEEEechhHHH--HHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 182 KAGELAGLKVLQLMNDYTAV--ALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAA--Al~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+.-.+|+.-| .++|.+..-. ... ...|.++|+|||+|+++..-
T Consensus 187 ----------m~GtdEGv~aWiTiN~Llg~L~--~~~-~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 187 ----------MDGTDEGVYAWITINYLLGTLG--APG-HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ----------ccCcccceeeeeehhhhhcccC--CCC-CCceEEEEcCCceEEEEEec
Confidence 2222333322 3455443221 111 47899999999999998764
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=6.3 Score=48.52 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...|...|..++..+.. . .+ ...+++++++.+.+.+++++.||++.. .-+..++..|
T Consensus 540 akN~lEs~Iy~~r~~L~~----~-~~-----~~~~t~ee~~~l~~~l~~~~~wL~~~~------------~~~~~~~~~k 597 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQD----E-KV-----KGKLSDSDKATIEKAIDEALEWLEKNQ------------LAEKEEFEHK 597 (653)
T ss_pred HHhhhHHHHHHHHHHHhh----h-hh-----hccCCHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHH
Confidence 445555666666665543 1 12 157899999999999999999997411 1245799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|...+++++.++
T Consensus 598 l~eL~~~~~pi~~r~ 612 (653)
T PTZ00009 598 QKEVESVCNPIMTKM 612 (653)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998776
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=83.79 E-value=52 Score=36.88 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=36.4
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~GAa~~a 416 (929)
+++.|+|.||...-.++++.|.+.+ |..+..+ .-.|.+++.|+|=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999988 4333322 357889999987443
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=83.41 E-value=0.37 Score=45.34 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcC---CcEEE---------Eechh-HHHHHH
Q psy7891 140 ELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAG---LKVLQ---------LMNDY-TAVALN 204 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AG---l~~~~---------li~Ep-tAAAl~ 204 (929)
+-++.-|+...+.|+...+.++..+.++++. ...+.+.++++.++ +++-. ++..| -|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~g~----s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSIGG----SKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TTGG----GGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecCch----hHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 3345556666666777767777777776633 34445556665555 66666 67778 777754
|
|
| >KOG1369|consensus | Back alignment and domain information |
|---|
Probab=83.25 E-value=8.1 Score=44.78 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCc---EEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEE
Q psy7891 167 IVPGYFNQIERQSMLKAGELAGLK---VLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQ 239 (929)
Q Consensus 167 tVPa~f~~~qR~al~~Aa~~AGl~---~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~ 239 (929)
.++.-.+..--+.+.+|.+.-|+. +..++|+.++.-++.++.. +.+++-+=+|.||--+.+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~--------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED--------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC--------CCcEEEEEECCCccceeeeecc
Confidence 334444555567788888888775 7889999998877655443 4566666789998877777654
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.05 E-value=5.3 Score=47.42 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 178 QSMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 178 ~al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
..+..+-+..|+++ ++|+...=|-+.| |.....+ . ....+|+|+|||+|.+++++
T Consensus 95 ~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~--~--~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 95 EFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG--G--ADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC--C--CCCEEEEEecCCeeeEEEec
Confidence 34555556679997 7777766666555 5544332 1 24589999999999999876
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=14 Score=45.46 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCC--HHHHH-HHHHHhC-C----c-----cCCCCCchHHHHhh
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRV--PKVQE-KITKVVG-V----E-----LSKNLNTDEAAALG 411 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sri--P~v~~-~l~~~f~-~----~-----i~~~~n~deaVA~G 411 (929)
++...++.+...+-.++...-...++.+.|+|-||-++- +++.+ .+.+.|. + . +..-+--+.+.-.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~G 323 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHH
Confidence 444566666655555554432223345678888888633 55543 5555553 1 1 11222344567788
Q ss_pred HHHHHHh
Q psy7891 412 AVYKAAD 418 (929)
Q Consensus 412 Aa~~aa~ 418 (929)
||-++.-
T Consensus 324 aa~~~~~ 330 (638)
T PRK14101 324 VSAILAE 330 (638)
T ss_pred HHHHHHH
Confidence 8655543
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=82.87 E-value=1.4 Score=50.73 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCC--CccEEEEEcCCcCCHHHHHHHHHHhC--C------ccCCCCCchHHHHhhHHHHHHh
Q psy7891 353 VGYPVEQALKSSAVPMD--VISQVILVGAGTRVPKVQEKITKVVG--V------ELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 353 i~~~i~~~L~~a~~~~~--~I~~ViLvGG~sriP~v~~~l~~~f~--~------~i~~~~n~deaVA~GAa~~aa~ 418 (929)
+.+++...|...-..-. .+..|+|+||++.+|.+.+.|...+- . .+.+.-||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 34445555554321111 27899999999999999999988763 1 4456678888899999999986
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=12 Score=46.31 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+..+ . ..+++++++.+.+.+++++.||+.. ...+++.+
T Consensus 567 akN~lE~~iy~~r~~l~e~---~---------~~~~~eer~~l~~~l~~~e~wL~~~---------------d~~~ik~~ 619 (673)
T PLN03184 567 TKNQADSVVYQTEKQLKEL---G---------DKVPADVKEKVEAKLKELKDAIASG---------------STQKMKDA 619 (673)
T ss_pred HHHhHHHHHHHHHHHHHHH---h---------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHH
Confidence 3344455555566555321 1 4688899999999999999999741 23688889
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
.++|...++.+..++
T Consensus 620 ~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 620 MAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888764
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.67 E-value=7.6 Score=45.70 Aligned_cols=92 Identities=15% Similarity=0.190 Sum_probs=54.5
Q ss_pred eeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHH------HHHHHHHHHcCCcEEEEechhHHHHH-Hhccc
Q psy7891 136 YHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIER------QSMLKAGELAGLKVLQLMNDYTAVAL-NYGIF 208 (929)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR------~al~~Aa~~AGl~~~~li~EptAAAl-~y~~~ 208 (929)
++++ .+...+.-|+..++...+..+..+. . .-|..-| ..+..+-+..|+++ .+|+.-+=|-+ .+|..
T Consensus 49 L~~e-ai~R~~~aL~~f~e~~~~~~~~~v~-~---vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~ 122 (492)
T COG0248 49 LSEE-AIERALSALKRFAELLDGFGAEEVR-V---VATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVA 122 (492)
T ss_pred cCHH-HHHHHHHHHHHHHHHHhhCCCCEEE-E---ehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHH
Confidence 4443 4444555555555444444555532 1 1233334 35777888889987 66655544444 34544
Q ss_pred ccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 209 ~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
+..+ . ....+|+|+|||||.+++..
T Consensus 123 ~~~~--~--~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 123 STLP--R--KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred hcCC--C--CCCEEEEEecCCeEEEEEec
Confidence 4322 1 46789999999999999986
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.65 E-value=7 Score=44.91 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=59.5
Q ss_pred EeHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 337 VTRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 337 itR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
.+|++|-+.. +.+.-++.+.++..=++++. .+..+-+=||.++..++-+.+.+++|.++.++.+ .|..|+||||.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 3556654432 33333444444444344554 5778889999999999999999999988877765 46889999999
Q ss_pred HHhhcCCcc
Q psy7891 416 AADLSTGFK 424 (929)
Q Consensus 416 aa~~s~~f~ 424 (929)
|..-.+.++
T Consensus 447 AGla~G~w~ 455 (499)
T COG0554 447 AGLAVGFWK 455 (499)
T ss_pred HhhhhCcCC
Confidence 987776443
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=81.04 E-value=9.5 Score=46.99 Aligned_cols=70 Identities=4% Similarity=0.067 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHH
Q psy7891 761 ALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEK 840 (929)
Q Consensus 761 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k 840 (929)
+...+...+..++..+... . ..++++++..+...+++++.||.+ + . ....+++.+
T Consensus 530 akN~lEs~iy~~r~~l~~~------~------~~~~~~er~~i~~~l~~~~~wL~~----~--------~-~~~~~~~~~ 584 (653)
T PRK13411 530 LKNQADSLLYSYESTLKEN------G------ELISEELKQRAEQKVEQLEAALTD----P--------N-ISLEELKQQ 584 (653)
T ss_pred HHHHHHHHHHHHHHHHHHh------h------ccCCHHHHHHHHHHHHHHHHHHhc----C--------C-CCHHHHHHH
Confidence 4455566666666665431 1 578999999999999999999964 1 1 255799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy7891 841 IRALEREVRYLENKS 855 (929)
Q Consensus 841 ~~~l~~~~~~i~~k~ 855 (929)
+++|+..+.+++.+.
T Consensus 585 ~~el~~~~~~i~~~~ 599 (653)
T PRK13411 585 LEEFQQALLAIGAEV 599 (653)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
|
| >PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
Probab=80.38 E-value=27 Score=38.75 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHh
Q psy7891 714 KIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 714 ~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e 754 (929)
.|+++++||-+ ++. +++.+.+++.+.++..-||--++.|
T Consensus 9 ~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNe 47 (379)
T PF11593_consen 9 KLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNE 47 (379)
T ss_pred cHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHH
Confidence 58899999983 444 9999999999999999998876543
|
Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex |
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.19 E-value=7.4 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=18.8
Q ss_pred cCCeEEEEEcCccceEEEEEEC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSP 44 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~ 44 (929)
....++.||||.||.+|+.+.-
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l 94 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVL 94 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEe
Confidence 3468999999999999998853
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=80.09 E-value=6.5 Score=42.57 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-----CccCCCCCchHHHHhhHHHHH
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-----VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-----~~i~~~~n~deaVA~GAa~~a 416 (929)
++....+.+...+..++...+..... |+|+||..+...+++.+.+.+. .++.....|....|.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44444455555556666555433222 9999999999877777755554 234566788999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 929 | ||||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 8e-52 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-51 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 6e-51 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-50 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 2e-50 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-50 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 3e-50 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 4e-50 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 6e-50 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 6e-50 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 6e-50 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 6e-50 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 7e-50 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 9e-50 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 9e-50 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-49 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-49 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-49 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-49 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-49 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-49 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 2e-49 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-49 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-49 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-49 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-49 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-49 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 6e-49 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 1e-48 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-48 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 2e-48 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 3e-48 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 3e-48 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 3e-48 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 4e-48 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-48 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 4e-48 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 5e-48 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 7e-48 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 2e-47 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-47 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 6e-47 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 6e-47 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-47 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 2e-46 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-46 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 3e-46 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 4e-46 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 8e-46 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 9e-46 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-45 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 3e-38 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 7e-37 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 9e-36 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 6e-34 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 1e-23 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 6e-19 |
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 929 | |||
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 7e-99 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 2e-12 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 3e-63 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 2e-61 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 5e-61 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 5e-50 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 1e-47 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 5e-43 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 2e-08 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 2e-08 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 2e-08 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 1e-04 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 1e-04 |
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 323 bits (830), Expect = 7e-99
Identities = 160/711 (22%), Positives = 303/711 (42%), Gaps = 63/711 (8%)
Query: 30 VDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSY 89
+DLG+ +A+ +I +N+ S R TP++V F R GE + T N+
Sbjct: 7 LDLGNNNSVLAVARNRGI-DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTV 65
Query: 90 GYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN---DNELYHVEELVAMLL 146
++G P + F + + + + + ++ +L AM +
Sbjct: 66 ANLKRIIGLDYHHPDFEQESKHFTSK--LVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 123
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K ++ I + I VP ++ + +R ++ A +AGL ++++ND TA ++YG
Sbjct: 124 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 183
Query: 207 IFKR-KDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265
IFK E P V F D+G S T SI+++ ++G ++ VLG D+
Sbjct: 184 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF------KKGQLK------VLGTACDKH 231
Query: 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIE 325
GG + + + + +F K D+ ENP+A ++ A +LK VLSAN +E
Sbjct: 232 FGGRDFDLAITEHFADEFK--TKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 289
Query: 326 GLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK 385
+++++D ++R E E L + L +RV PV +AL + + + + V ++G TR+P
Sbjct: 290 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 349
Query: 386 VQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERE 445
+++ I++ G LS LN DEA A GA + A S +V+ F +DI Y + ++++
Sbjct: 350 LKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQ 409
Query: 446 SESGD-TKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQIAMLGTK 504
E D ++ +++P K++T N+ GDF+ SY + Q+ +
Sbjct: 410 VEDEDHMEVFPA-----GSSFPSTKLITLNRT-GDFSMAASYT------DITQLPPNTPE 457
Query: 505 QISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSK 564
QI+ ++++GV E +S +K D SG+ ++ + + + +++ K
Sbjct: 458 QIANWEITGVQL------PEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVK 511
Query: 565 LGNTLTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEE---SVKNAT 621
+ LT + D + +NE +++ N+ + K V TE ++ + EE +++
Sbjct: 512 -KDDLTIVAHTFGLDAKK--LNELIEKENEMLAQ-DKLVAETEDRKNTLEEYIYTLRGKL 567
Query: 622 QTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHAKVRKEKALN 681
+ A S +E + L + K+ L K
Sbjct: 568 EEEYAPF----------ASDAE----KTKLQGM-LNKAEEWLYDEGFDSIKAKYIAK-YE 611
Query: 682 SLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 732
L SL + + +E A + + AE
Sbjct: 612 ELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKK 662
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 9/149 (6%)
Query: 616 SVKNATQTPDADKKPKIVTVKE---PISASETRYGVSTLNEKQVEKSLSKLDSLNQIEHA 672
+++ A D + TVK+ I A L+ K++ + + K + + +
Sbjct: 491 TIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFG-----LDAKKLNELIEKENEMLAQDKL 545
Query: 673 KVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEAD 732
E N+LE ++ + KLE EEY+ A+ E + +++ WL ++G+++
Sbjct: 546 VAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 733 VLENKLNEINSLVVPIWERHREHQERPEA 761
K E+ SL I R+ +E +
Sbjct: 605 KYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-63
Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 25/377 (6%)
Query: 49 EIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLD---LLGKSIDSPVV 105
EI N + R TP+ VAF ER G+ A+ P+N+ D L+G+ + V
Sbjct: 46 EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNT---IFDAKRLIGRKFEDATV 102
Query: 106 QLFKSRFPYYDIVADEERGTIVFKTNDNE-LYHVEELVAMLLHKAREYASVSAGQVINEA 164
Q +P+ +V++ + + + + EE+ +M+L K +E A G ++ A
Sbjct: 103 QSDMKHWPF-RVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSA 161
Query: 165 VIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFY 224
VI VP YFN +RQ+ AG + GL VL+++N+ TA A+ YG+ K+ +V+ +
Sbjct: 162 VITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK--NVLIF 219
Query: 225 DMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFN 284
D+G + VSI+ T E G E V D LGG + R+ L ++F
Sbjct: 220 DLGGGTFDVSIL------TIEDGIFE------VKSTAGDTHLGGEDFDNRMVSHLAEEFK 267
Query: 285 EMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA 344
+K KD+ N RAV +L R K LS++ + +I+ L + +DF +TRA FE
Sbjct: 268 --RKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEE 325
Query: 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKV-VGVELSKNLN 403
LN DLF PVE+AL+ + + I +++LVG TR+PK+Q+ + G EL+K++N
Sbjct: 326 LNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 385
Query: 404 TDEAAALGAVYKAADLS 420
DEA A GA +AA L
Sbjct: 386 PDEAVAYGAAVQAAILI 402
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 2e-61
Identities = 159/466 (34%), Positives = 237/466 (50%), Gaps = 47/466 (10%)
Query: 22 SYGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIG 81
S G AV +DLG+ + V + G EI N + R TP+ VAF ER G+ A+
Sbjct: 2 SKGPAV-GIDLGTTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 82 TRFPSNSYGYFLD---LLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNE-LYH 137
P+N+ D L+G+ D VVQ +P+ +V D R + + ++
Sbjct: 60 AMNPTNT---VFDAKRLIGRRFDDAVVQSDMKHWPF-MVVNDAGRPKVQVEYKGETKSFY 115
Query: 138 VEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMND 197
EE+ +M+L K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+
Sbjct: 116 PEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINE 175
Query: 198 YTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 257
TA A+ YG+ K+ E N V+ +D+G + VSI+ T G E V
Sbjct: 176 PTAAAIAYGLDKKVG-AERN---VLIFDLGGGTFDVSIL------TIAAGIFE------V 219
Query: 258 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
D LGG + R+ + +F +K KD+ EN RAV +L R K LS++
Sbjct: 220 KSTAGDTHLGGEDFDNRMVNHFIAEFK--RKHKKDISENKRAVRRLRTACERAKRTLSSS 277
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
+ +I+ L + IDF +TRA FE LN DLF PVE+AL+ + + I ++LV
Sbjct: 278 TQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 337
Query: 378 GAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADLSTGFKVKKFITKDIVLY 436
G TR+PK+Q+ + G EL+K++N DEA A GA +AA LS G K + +D++L
Sbjct: 338 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS-GDKSEN--VQDLLLL 394
Query: 437 ---PIQVEFERESESGD--TKIIKRMLFGPSNTY-PQKKILTFNKY 476
P+ + E +G T +IKR NT P K+ TF Y
Sbjct: 395 DVTPLSLGIET---AGGVMTVLIKR------NTTIPTKQTQTFTTY 431
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 5e-50
Identities = 122/413 (29%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ L+G+ VQ S P+ I+A + G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPF-KIIAADN-GDAWVEVKGQK-MAPPQISA 117
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 319
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 320 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 367
H ++ K+ TRA+ E+L EDL +R ++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIELLKVALQDAGLS 330
Query: 368 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 1e-47
Identities = 124/413 (30%), Positives = 201/413 (48%), Gaps = 52/413 (12%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDA--QIIGTR 83
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A Q +
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLE-NAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTN- 61
Query: 84 FPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVA 143
P N+ L+G+ VQ S P+ I AD G + + ++ A
Sbjct: 62 -PQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADN--GDAWVEVKGQK-MAPPQISA 117
Query: 144 MLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVAL 203
+L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL
Sbjct: 118 EVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 177
Query: 204 NYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263
YG+ K N T + YD+G + +SI+ ++ + E VL D
Sbjct: 178 AYGLDK-GTGNRT----IAVYDLGGGTFDISII--EIDEVDGEKTFE------VLATNGD 224
Query: 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE---- 319
LGG + RL ++L ++F K D+ +P A+ +L + A + K LS+ +
Sbjct: 225 THLGGEDFDSRLINYLVEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVN 282
Query: 320 ------------HFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP 367
H ++ K+ TRA+ E+L EDL +R P++ AL+ + +
Sbjct: 283 LPYITADATGPKH----------MNIKV--TRAKLESLVEDLVNRSIEPLKVALQDAGLS 330
Query: 368 MDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ I VILVG TR+P VQ+K+ + G E K++N DEA A+GA + L+
Sbjct: 331 VSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 5e-43
Identities = 121/417 (29%), Positives = 187/417 (44%), Gaps = 91/417 (21%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQ-------- 78
++ +DLG+ VA++ G I N E R TP++VAF GER GE A+
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIP-NPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPN 62
Query: 79 -------IIGTRFPSNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTN 131
+GT Y +++ GK
Sbjct: 63 TIISIKRHMGTD-------YKVEIEGKQ-------------------------------- 83
Query: 132 DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKV 191
Y +E+ A++L + YA G+ + AVI VP YFN +RQ+ AG +AGL+V
Sbjct: 84 ----YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEV 139
Query: 192 LQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVET 251
+++N+ TA AL YG+ K +D +T ++ YD+G + VSI+ G E
Sbjct: 140 ERIINEPTAAALAYGLDKEED--QT----ILVYDLGGGTFDVSILELG------DGVFE- 186
Query: 252 HPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLK 311
V D LGG + + D+L +F ++ D+ ++ A+ +L A + K
Sbjct: 187 -----VKATAGDNHLGGDDFDQVIIDYLVNQFK--QEHGIDLSKDKMALQRLKDAAEKAK 239
Query: 312 NVLSANNEHFAQI--------EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKS 363
LS + QI E ++ L TRA+FE L+ L +R PV QAL+
Sbjct: 240 KELSGVTQ--TQISLPFISANENGPLHLEMTL--TRAKFEELSAHLVERTMGPVRQALQD 295
Query: 364 SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420
+ + I +VILVG TR+P VQE I + +G E K +N DE A+GA + ++
Sbjct: 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIA 352
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 3e-16
Identities = 105/664 (15%), Positives = 204/664 (30%), Gaps = 194/664 (29%)
Query: 270 EMQIRLRDFLGKKFNEMKKT--TKDVFENPRAVAK------LFKEAGRLKNV-------L 314
E Q + +D L + KDV + P+++ + + L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 315 SANNEHFAQIEGLIDEIDFKLLVTRAEFE----ALNEDLF----DRVG--------YPVE 358
S E + + I++K L++ + E ++ ++ DR+ Y V
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 359 -----QALKSSAVPMDVISQVILVG-AGT----------RVPKVQEK-------ITKVVG 395
L+ + + + V++ G G+ KVQ K + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LK 190
Query: 396 VELSKNLNTDEA--AALGAVYKAADLSTGFKVKKFITKDIVLYPIQVEFERESESGDTKI 453
N N+ E L + D + ++ I++ +
Sbjct: 191 -----NCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNIKLRIH------SIQA 232
Query: 454 IKRMLFGPSNTYPQK-KILTFNKYVGDFNFNVSYASEIEHLNPE-QIAMLGTKQISKFDV 511
R L S Y +L NV A N +I +L T+ D
Sbjct: 233 ELRRLL-KSKPYENCLLVL-------L---NVQNAKAWNAFNLSCKI-LLTTRFKQVTDF 280
Query: 512 SGVSEAFGKHNEENAESKGIKAHFAMDES-GILSL-VNIELVVEKQEAAE-SPLSKLGNT 568
+S A H + S DE +L ++ +E +P
Sbjct: 281 --LSAATTTHISLDHHSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR------ 328
Query: 569 LTSLFSRSKTDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADK 628
S+ + S D + K+VN + E S+ P +
Sbjct: 329 RLSIIAESIRDGLATW-------------DNWKHVN-CDKLTTIIESSLNV--LEPAEYR 372
Query: 629 K--------PKIVTVKEPI--------SASETRYGVSTLN-----EKQVEKSLSKLDSLN 667
K P + + S+ V+ L+ EKQ ++S + S+
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 668 QIEHAKVRKEKAL--------NSLESLLFDAKSKLELEEYS--------SVAAPNESKTI 711
K+ E AL N ++ D L++Y E T+
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 712 VDKI--DEITNWLEE----DG--WNAEADVLENKLNEINSLVVPIWERH-REHQERPEAL 762
+ D +LE+ D WNA +L N L ++ ++ + ++ + E L
Sbjct: 493 FRMVFLD--FRFLEQKIRHDSTAWNASGSIL-NTLQQLK-----FYKPYICDNDPKYERL 544
Query: 763 KSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQN 822
+N + F + + N ++ +L + + L+ E + E++ K
Sbjct: 545 ------VNAILDF---LPKIEENLICSKYTDL---LRI----ALMAEDEAIFEEAHK--- 585
Query: 823 QLKK 826
Q+++
Sbjct: 586 QVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 2e-09
Identities = 71/440 (16%), Positives = 137/440 (31%), Gaps = 120/440 (27%)
Query: 479 DFNFNVSYASEIEHLNPEQIAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMD 538
DF E ++ + +++ + FD V + K E I
Sbjct: 8 DFETG-----EHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMS-KDA 60
Query: 539 ESGILSLVNIELVVEKQEAAESPLSKLGNTLTS----LFSRSKTDENEKPINEA--VDEG 592
SG L L ++ KQE + L L S KT++ + + +++
Sbjct: 61 VSGTLRL--FWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 593 NKTAEEPSK----NVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYG- 647
++ + NV+ + + ++ A + K V + G
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK-----LRQALLE---LRPAKNVLI----------DGV 158
Query: 648 ---------VSTLNEKQVEKSLSKLDSLNQIEHAKVRK----EKALNSLESLLFDAKSKL 694
+ +V+ + +I ++ E L L+ LL+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 695 ELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVV--PIWERH 752
+ + S I +I I L +L++K E N L+V +
Sbjct: 214 T-------SRSDHSSNIKLRIHSIQAELR--------RLLKSKPYE-NCLLVLLNVQN-- 255
Query: 753 REHQERPEALKSLN---------------NALNVSVTFYNSIKNLSLNTNETEDLNLFSD 797
+A + N + L+ + T + S+ + S+ E +L
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL- 308
Query: 798 IELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR-ALEREVRYLE-NKS 855
K LD + + ++ ++P L+I I E IR L + N
Sbjct: 309 ---KYLDC----------RPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCD 353
Query: 856 KLWMA---SLNKKKESTSKK 872
KL SLN + + +K
Sbjct: 354 KLTTIIESSLNVLEPAEYRK 373
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 4e-06
Identities = 56/322 (17%), Positives = 101/322 (31%), Gaps = 80/322 (24%)
Query: 2 KISLVT---------LCSSVVLLLTLFEHSYGIAVM-SVDLGSEWMKVAI------VSPG 45
KI L+T L ++ ++L HS + L +++ V
Sbjct: 267 KI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 46 VPMEIALNKESKRKTPTLVAFHKGERTFGEDA--QIIGTRF----PSNSYGYFLDL--LG 97
P +++ ES R K D II + P+ F L
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 98 KSIDSP--VVQLFKSRFPYYD---IVADEERGTIVFKTNDNELY-----------HVEEL 141
S P ++ L D +V + ++V K +E
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 142 VAMLLHKA--REYASVSAGQVINEAVIIVPGYF-NQIERQSMLKAGELAGLKVLQLMNDY 198
A LH++ Y + + YF + I LK E + M +
Sbjct: 443 YA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHP-----ERMTLF 493
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS-YQVVKTKERGFVETHPQVSV 257
V L++ ++K + +D AW+ + SI++ Q +K + + P+
Sbjct: 494 RMVFLDFRFLEQK----------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK--- 540
Query: 258 LGVGYDRTLGGLEMQIRLRDFL 279
Y+R + + DFL
Sbjct: 541 ----YERLVNAIL------DFL 552
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 670 EHAKVRKE-KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWN 728
H+ + LES F+ K +E E+ +P + K I DK DEI WL+ +
Sbjct: 9 HHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQ-T 67
Query: 729 AEADVLENKLNEINSLVVPI 748
AE + E++ ++ L PI
Sbjct: 68 AEKEEFEHQQKDLEGLANPI 87
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Length = 113 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 2e-08
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 675 RKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVL 734
+ A N+LES F+ KS +E E + + K ++DK E+ +WL+ + AE D
Sbjct: 6 ERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANT-LAEKDEF 64
Query: 735 ENKLNEINSLVVPI 748
E+K E+ + PI
Sbjct: 65 EHKRKELEQVCNPI 78
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Length = 113 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 679 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 738
+ LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 5 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQT-AEKEEFEHQQ 63
Query: 739 NEINSLVVPI 748
E+ + PI
Sbjct: 64 KELEKVCNPI 73
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 21/258 (8%)
Query: 648 VSTLNEKQVEKSL--SKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAP 705
EK + + ++ + + E +VR LE +L + ++++E EE S
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQ 947
Query: 706 NESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSL 765
E K + ++ ++ LEE+ A L+ + + + + + +++ L
Sbjct: 948 AEKKKMQQQMLDLEEQLEEE--EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 766 NNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLK 825
L + +L+ N E E+ +++I+E +V +K EK + +L+
Sbjct: 1006 RKLLE------ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 826 KSDPIVLTIRSIVEKIRALEREVRYLENKSKLWMASLNKKKESTSK-----KKEDKPKNK 880
K R + + L ++ L+ + A L KK+E + E KN
Sbjct: 1060 K------IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 881 DSDKTKPSETEQSKPEEQ 898
K + E+ S +E
Sbjct: 1114 ALKKIRELESHISDLQED 1131
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 39/275 (14%), Positives = 85/275 (30%), Gaps = 81/275 (29%)
Query: 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDY 198
++V L K G + +A +P ++ AGL+++ L+++
Sbjct: 74 IQIVRELKAKVERLL----GSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEP 129
Query: 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSY-QVVKTKERGFVETHPQVSV 257
A A GI + + D+G +T ++++ ++ T
Sbjct: 130 VAAARALGI----NDG-------IVVDIGGGTTGIAVIEKGKITATF------------- 165
Query: 258 LGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN 317
D GG + + L F+EA +K S +
Sbjct: 166 -----DEPTGGTHLSLVLAGSYKIP---------------------FEEAETIKKDFSRH 199
Query: 318 NEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377
E + + +++ V++ +K+ D V +V
Sbjct: 200 REIMRVV----------------------RPVIEKMALIVKEVIKN----YDQTLPVYVV 233
Query: 378 GAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412
G + E+ ++ +G E+ ++ LG
Sbjct: 234 GGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGI 268
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 929 | |||
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.96 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.95 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.93 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.93 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.93 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.91 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.91 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.9 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.87 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.84 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.77 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.76 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.74 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.73 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.73 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.71 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.66 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.46 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.33 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.33 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.31 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.27 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.11 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 98.99 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 98.9 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 98.89 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 98.89 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.56 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 98.25 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 98.11 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.7 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.64 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 97.15 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 96.87 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 96.82 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.38 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 96.14 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.12 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.08 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 95.91 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.9 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 95.82 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.79 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.78 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 95.77 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 95.68 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 95.67 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.63 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 95.54 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.53 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.46 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 95.34 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 95.25 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 95.15 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.06 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 95.02 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 94.86 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 94.85 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 94.66 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 94.58 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 93.83 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 93.45 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 92.3 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 91.76 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 90.63 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 90.0 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 90.0 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 89.08 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 88.48 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 87.58 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 86.73 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 86.69 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 83.69 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 83.66 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 83.5 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 83.3 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 83.12 | |
| 3uun_A | 119 | Dystrophin; triple helical, cell structure and sta | 80.75 |
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-102 Score=933.47 Aligned_cols=646 Identities=25% Similarity=0.429 Sum_probs=553.7
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
|++||||||||||+||++.+| +++++.|..|+|.+||+|+|.+++++||..|..++.++|.++++++|||||+.++|+.
T Consensus 2 m~~iGIDlGTtns~va~~~~g-~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNR-GIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETT-EEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECC-eeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 468999999999999999988 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEc--CC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKT--ND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~--~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
++...+++||..+...+ |.+.+.+ .+ ...|+|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 81 v~~~~~~~p~~v~~~~~--g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~ 158 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDD--KKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIA 158 (675)
T ss_dssp HHHHHTTCCSEEEECTT--SBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCC--CceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 99999999996554333 3343332 23 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCC---CCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEE
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFN---ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVL 258 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~---~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~ 258 (929)
+|+++|||++++||+||+|||++|++.+.. ++ .. +.++||||+||||||+||+++. .| .++|+
T Consensus 159 ~Aa~~AGl~~~~li~EP~AAAlaygl~~~~-~~~~~~~-~~~vlV~DlGGGT~Dvsv~~~~------~g------~~~V~ 224 (675)
T 3d2f_A 159 DAARIAGLNPVRIVNDVTAAGVSYGIFKTD-LPEGEEK-PRIVAFVDIGHSSYTCSIMAFK------KG------QLKVL 224 (675)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHHHHHCSC-CCCSSSC-CEEEEEEEECSSCEEEEEEEEE------TT------EEEEE
T ss_pred HHHHHcCCceEEEEcchHHHHHHHhhhccc-cccccCC-CcEEEEEEcCCCcEEEEEEEec------CC------eEEEE
Confidence 999999999999999999999999987632 21 23 7899999999999999999986 24 78999
Q ss_pred EEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEe
Q psy7891 259 GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVT 338 (929)
Q Consensus 259 ~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~it 338 (929)
+++|+..+||++||.+|++||.++|..+ ++.++..+++++.||+.+||++|+.||.+.++.+.|++++++.++.+.||
T Consensus 225 a~~gd~~lGG~d~D~~l~~~l~~~f~~~--~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~it 302 (675)
T 3d2f_A 225 GTACDKHFGGRDFDLAITEHFADEFKTK--YKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLS 302 (675)
T ss_dssp EEEEETTCSHHHHHHHHHHHHHHHHHHH--TSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEE
T ss_pred EEcCCCCccHHHHHHHHHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEe
Confidence 9999999999999999999999999884 45688889999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHh
Q psy7891 339 RAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 339 R~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
|++|+++|.++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||..+..++||++|||+|||++|+.
T Consensus 303 r~~fe~l~~~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ 382 (675)
T 3d2f_A 303 REELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAI 382 (675)
T ss_dssp HHHHHHHTHHHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hcCCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCceEEEEEeccCcCcCChhhh
Q psy7891 419 LSTGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGDFNFNVSYASEIEHLNPEQI 498 (929)
Q Consensus 419 ~s~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~~~i~i~~g~~~~~~~~~~~ 498 (929)
+++.|+++++.+.|++||+|||+|.+..+ ...+.+||++|++||++++.+|++. .++.+.++|..+.. ++..+
T Consensus 383 ls~~~~v~~~~l~Dv~p~slgi~~~~~~~----~~~~~~li~rnt~iP~~k~~~f~~~-~~~~~~~~~~ge~~-~~~~~- 455 (675)
T 3d2f_A 383 HSPTLRVRPFKFEDIHPYSVSYSWDKQVE----DEDHMEVFPAGSSFPSTKLITLNRT-GDFSMAASYTDITQ-LPPNT- 455 (675)
T ss_dssp TCSSCCCCCCEEEEEECSCEEEEECCTTC----SCSEEEEECTTEEESEEEEEEEEES-SCEEEEEEESCGGG-SCTTC-
T ss_pred hCCCCcccceEEEeeeecceEeeecCCCC----CcceEEEEcCCCCCCcccceeeeec-CCceEEEEEcCCcc-ccccc-
Confidence 99999999999999999999999974321 1137899999999999999999987 78899997741433 33223
Q ss_pred ccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCC
Q psy7891 499 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 578 (929)
Q Consensus 499 ~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 578 (929)
+..|++|.|.||++++.+. +++|+|+|.+|.||+|+|++++++++... +
T Consensus 456 ----n~~lg~f~l~gi~~~~~g~------~~~i~v~f~id~~Gil~V~a~~~~~~~~~--~------------------- 504 (675)
T 3d2f_A 456 ----PEQIANWEITGVQLPEGQD------SVPVKLKLRCDPSGLHTIEEAYTIEDIEA--G------------------- 504 (675)
T ss_dssp ----CSEEEEEEEECCCCCSSCS------CEEEEEEEEECTTSCEEEEEEEEECC-------------------------
T ss_pred ----CceeeEEEecCcCCCCCCC------cceEEEEEEEcCCCcEEEEEEEEeecccc--c-------------------
Confidence 3456777999999875443 25899999999999999999876532100 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHH
Q psy7891 579 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 658 (929)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~ 658 (929)
+.|...++..|+|+.. ..+||++++++
T Consensus 505 --------------------------------------------------~~~~t~~~~~i~i~~~---~~~ls~~ei~~ 531 (675)
T 3d2f_A 505 --------------------------------------------------SDTKTVKKDDLTIVAH---TFGLDAKKLNE 531 (675)
T ss_dssp ----------------------------------------------------CCCCEEEECEEEEE---CSSCCHHHHHH
T ss_pred --------------------------------------------------ccccCcceeeEEEecC---CCCCCHHHHHH
Confidence 0000111223444322 23799999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHH
Q psy7891 659 SLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKL 738 (929)
Q Consensus 659 ~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl 738 (929)
+++++.+|..+|+.++++.+++|+||+|+|++|++|+ +++.+++++++|++|...|+++++|||++++++++++|++|+
T Consensus 532 ~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~ 610 (675)
T 3d2f_A 532 LIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKY 610 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999997 468899999999999999999999999888889999999999
Q ss_pred HHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhhc
Q psy7891 739 NEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNSIKN 781 (929)
Q Consensus 739 ~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~ 781 (929)
++|+++++||..|++++..||.+++.|++.|++++.++..+..
T Consensus 611 ~~l~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~~~ 653 (675)
T 3d2f_A 611 EELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAA 653 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988643
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-92 Score=848.57 Aligned_cols=594 Identities=26% Similarity=0.395 Sum_probs=529.3
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.|||||||||||+||++.+| .++++.|..|.|++||+|+|. ++++++|..|..++.++|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTT~S~Va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CEEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred cEEEEEcCCCcEEEEEEECC-EEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 58999999999999999988 778999999999999999996 5689999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++.+.+++||..+... .+.+.+.+++ ..++|+++++++|++|++.++.++|.++.++|||||+||++.||+++++||
T Consensus 82 v~~~~~~~p~~~~~~~--~g~~~~~~~~-~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAAD--NGDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHTTCSSEEEECT--TSBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcC--CCceEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999765543 3556666665 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||+++++|+||+|||++|++..... +.++||||+||||||+|++++.... ..+.+++++++++.
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~~-----~~~vlV~DlGGGT~Dvsi~~~~~~~--------~~~~~evla~~gd~ 225 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGTG-----NRTIAVYDLGGGAFDISIIEIDEVD--------GEKTFEVLATNGDT 225 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCCS-----SEEEEEEEECSSCEEEEEEEEEESS--------SCEEEEEEEEEEET
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccCC-----CCEEEEEECCCCeEEEEEEEEecCC--------CCceEEEEEecCCC
Confidence 9999999999999999999999876432 6899999999999999999986211 12489999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||.+|++||.++|.. +.+.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||+
T Consensus 226 ~lGG~d~D~~l~~~l~~~f~~--~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~ 303 (605)
T 4b9q_A 226 HLGGEDFDSRLINYLVEEFKK--DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (605)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH--HTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHH
T ss_pred CcChHHHHHHHHHHHHHHHhh--hcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHH
Confidence 999999999999999999998 4456888899999999999999999999999999999887654 6789999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|.++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.++
T Consensus 304 ~~e~l~~~~~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~ 383 (605)
T 4b9q_A 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++|++|||++. ++ .+.+||++|++||++++.+|++..++ +.|.|||| ++... .+
T Consensus 384 ~~--~~~~~l~dv~p~slgie~~-----~g---~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~--~~ 450 (605)
T 4b9q_A 384 GD--VKDVLLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRA--AD 450 (605)
T ss_dssp TS--SCSEEEECBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEES-SCSBG--GG
T ss_pred CC--CCceEEEeeeeeEEEEEEc-----CC---EEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEec-ccccc--cc
Confidence 87 5789999999999999886 33 37899999999999999999887553 89999999 87633 24
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
|. .|++|.+.||++++++. ++|+|+|++|.||+|+|++.+ .+|+
T Consensus 451 n~-----~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~tg--------------- 494 (605)
T 4b9q_A 451 NK-----SLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD---------KNSG--------------- 494 (605)
T ss_dssp SE-----EEEEEEEECCCCCSTTC-------CCEEEEEEECTTSCEEEEEEE---------TTTC---------------
T ss_pred CC-----EeeEEEEeCCCCCcCCC-------ceEEEEEEEcCCcEEEEEEEe---------cCCC---------------
Confidence 44 45667889999887665 689999999999999999874 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
|+ ..+.++ ....||++|++
T Consensus 495 -----------------------------------------------------~~----~~i~i~----~~~~ls~~ei~ 513 (605)
T 4b9q_A 495 -----------------------------------------------------KE----QKITIK----ASSGLNEDEIQ 513 (605)
T ss_dssp -----------------------------------------------------CE----ECCEEE----SCCSCCHHHHH
T ss_pred -----------------------------------------------------cE----EEEEec----CCCCCCHHHHH
Confidence 00 012222 12469999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
+|++.+++|..+|+.++++.++||+||+|+|++|..|+ ++.+++++++|+.|...++++++||+.+ ++++|+++
T Consensus 514 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~ 587 (605)
T 4b9q_A 514 KMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAK 587 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHHHHHH
T ss_pred HHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 5788999999999999999999999953 58999999
Q ss_pred HHHHHhchhhHHHHHHh
Q psy7891 738 LNEINSLVVPIWERHRE 754 (929)
Q Consensus 738 l~eL~~~~~pi~~R~~e 754 (929)
+++|++.+.||..++++
T Consensus 588 ~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 588 MQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-91 Score=835.25 Aligned_cols=594 Identities=26% Similarity=0.392 Sum_probs=523.9
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEE-ecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAF-HKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~-~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.+||||||||||+||++.+| .++++.|..|.|++||+|+| .+++++||..|..+...+|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp -CEEEECCSSEEEEEEEETT-EEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CEEEEEcCCcCEEEEEEECC-EEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 48999999999999999988 78899999999999999999 46789999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++...+++||..+... .+.+.+.+++ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|+
T Consensus 82 v~~~~~~~p~~~~~~~--~g~~~i~~~g-~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~ 158 (605)
T 2kho_A 82 VQRDVSIMPFKIIAAD--NGDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHHHCSSCEEECT--TSBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEECC--CCceEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 9988889998654333 3455666654 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
++|||++++||+||+|||++|++.... . +.++||||+||||||+|++++.... ..+.++|+++.|+.
T Consensus 159 ~~AGl~v~~li~EP~AAAlay~l~~~~----~-~~~vlV~DlGGGT~Dvsi~~~~~~~--------~~g~~~v~a~~gd~ 225 (605)
T 2kho_A 159 RIAGLEVKRIINEPTAAALAYGLDKGT----G-NRTIAVYDLGGGTFDISIIEIDEVD--------GEKTFEVLATNGDT 225 (605)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTTTSSS----S-EEEEEEEEECSSCEEEEEEEEECTT--------TSCEEEEEEEEEES
T ss_pred HHcCCceEEEecCHHHHHHHhhhcccC----C-CCEEEEEECCCCeEEEEEEEEEecC--------CCCeEEEEEECCCC
Confidence 999999999999999999999986532 2 6899999999999999999975111 02379999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~ 340 (929)
.+||.+||..|++||.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++.++|||+
T Consensus 226 ~lGG~d~D~~l~~~l~~~~~~~--~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~ 303 (605)
T 2kho_A 226 HLGGEDFDSRLINYLVEEFKKD--QGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (605)
T ss_dssp SCSGGGTHHHHHHHHHHHHHHH--HSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred CccHHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHH
Confidence 9999999999999999999884 445788899999999999999999999999888999887753 5788899999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|+++|+.+++...+|+.|+||||+||+|+|++.|+++||..+..++||++|||+|||++|+.++
T Consensus 304 ~fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~ 383 (605)
T 2kho_A 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp HHHTTCCSTTGGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999998
Q ss_pred CCcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhh
Q psy7891 421 TGFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 421 ~~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 497 (929)
+. ++++.+.|++|+++|+++. ++ .+.+||++|+++|.+++.+|++..++ +.|.||+| +.... .+
T Consensus 384 ~~--~~~~~l~dv~p~slgi~~~-----~g---~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~g-e~~~~--~~ 450 (605)
T 2kho_A 384 GD--VKDVLLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRA--AD 450 (605)
T ss_dssp TS--CCCCCCSBCCCCCEEEEET-----TT---EEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEES-SCSBG--GG
T ss_pred CC--ccCceEEeeeeeecccccc-----CC---ceEEEEecccccCccceEEEEecCCCceEEEEEEEec-cCccc--cc
Confidence 76 6889999999999999986 22 37899999999999999999886543 89999999 76532 24
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+. .|++|.+.|+++++++. ++|+|+|.+|.||+|+|++.+. .+.
T Consensus 451 n~-----~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~~---------~tg--------------- 494 (605)
T 2kho_A 451 NK-----SLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKDK---------NSG--------------- 494 (605)
T ss_dssp SE-----EEEEEEEECCCSCCTTC-------SCEEEEEEECTTSCEEEEEEET---------TTC---------------
T ss_pred Cc-----EEeEEEecCCCCCCCCC-------cEEEEEEEEcCCCceeEEEEEc---------CCC---------------
Confidence 43 46677899999876554 6899999999999999998641 100
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
+.. .+.++ .. .+||+++++
T Consensus 495 -----------------------------------------------------~~~----~i~i~---~~-~~ls~~~i~ 513 (605)
T 2kho_A 495 -----------------------------------------------------KEQ----KITIK---AS-SGLNEDEIQ 513 (605)
T ss_dssp -----------------------------------------------------CEE----EEEEC---TT-SSCCHHHHH
T ss_pred -----------------------------------------------------cee----ecccc---cc-cCCCHHHHH
Confidence 000 12221 12 679999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~k 737 (929)
++++++++|..+|+.++++.+++|+||+|+|++|+.|+ ++.+++++++|+.|...|+++++||+++ ++++|+++
T Consensus 514 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~ 587 (605)
T 2kho_A 514 KMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAK 587 (605)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHTTSS----CHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 99999999999999999999999999999999999995 3889999999999999999999999843 79999999
Q ss_pred HHHHHhchhhHHHHHHh
Q psy7891 738 LNEINSLVVPIWERHRE 754 (929)
Q Consensus 738 l~eL~~~~~pi~~R~~e 754 (929)
+++|+++++||..|++.
T Consensus 588 ~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 588 MQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-85 Score=776.20 Aligned_cols=543 Identities=30% Similarity=0.462 Sum_probs=480.2
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
+.+||||||||||+||++.+| +++++.|+.|+|++||+|+|.+++++||..|..++.++|.++++++|||||+.++|+.
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 82 (554)
T 1yuw_A 4 GPAVGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 82 (554)
T ss_dssp CCCEEEEECSSEEEEEEECSS-SEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSH
T ss_pred CCEEEEEeCcccEEEEEEECC-EEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHH
Confidence 458999999999999999988 8899999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
++...+++||..+.. ++...+.+...+ ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 83 v~~~~~~~p~~v~~~-~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A 161 (554)
T 1yuw_A 83 VQSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDA 161 (554)
T ss_dssp HHHHHTTCSSEEEEE-TTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEec-CCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 999999999976533 223333343333 368999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecC
Q psy7891 184 GELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYD 263 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d 263 (929)
+++|||+++++++||+|||++|++.+... . +.++||||+||||||++++++. .| .++|+++.++
T Consensus 162 ~~~AGl~~~~li~EP~AAAlay~~~~~~~---~-~~~vlV~D~GgGT~Dvsv~~~~------~g------~~~v~a~~g~ 225 (554)
T 1yuw_A 162 GTIAGLNVLRIINEPTAAAIAYGLDKKVG---A-ERNVLIFDLGGGTFDVSILTIA------AG------IFEVKSTAGD 225 (554)
T ss_dssp HHTTTCEEEEEEEHHHHHHHHTTCSTTCS---S-CEEEEEEEECSSCEEEEEEEEE------TT------EEEEEEEEEE
T ss_pred HHHcCCCeEEEeCcHHHHHHHHHhhccCC---C-CcEEEEEEcCCCeEEEEEEEEc------CC------cEEEEEEeCC
Confidence 99999999999999999999999865421 2 6899999999999999999986 24 7899999999
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHH
Q psy7891 264 RTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFE 343 (929)
Q Consensus 264 ~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe 343 (929)
..+||.+||..|++||.++|..+ ++.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.++...|+|++|+
T Consensus 226 ~~lGG~d~d~~l~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e 303 (554)
T 1yuw_A 226 THLGGEDFDNRMVNHFIAEFKRK--HKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFE 303 (554)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH--TSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHH
Confidence 99999999999999999999884 4558888999999999999999999999999899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhcC-
Q psy7891 344 ALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLST- 421 (929)
Q Consensus 344 ~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s~- 421 (929)
++|.++++++..+|+++|+.+++...+|+.|+|+||+||+|+|++.|++.|+ .++..+.||++|||+|||++|+.+++
T Consensus 304 ~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~ 383 (554)
T 1yuw_A 304 ELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGD 383 (554)
T ss_dssp HHTHHHHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999997 78889999999999999999999987
Q ss_pred -CcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhh
Q psy7891 422 -GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQ 497 (929)
Q Consensus 422 -~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~ 497 (929)
.++++++.+.|++|++||+++. ++ .+.+||++|+++|.+++.+|++..++ +.|.||+| +..... +
T Consensus 384 ~~~~~~~~~~~dv~p~slgi~~~-----~g---~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~g-e~~~~~--~ 452 (554)
T 1yuw_A 384 KSENVQDLLLLDVTPLSLGIETA-----GG---VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG-ERAMTK--D 452 (554)
T ss_dssp CCCCTTSSCCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG--G
T ss_pred ccccccceEEEEeeeeEEEEEec-----Cc---eEEEEEECCCccCceeEEEeeeccCCCceEEEEEEec-Cccccc--c
Confidence 4778999999999999999886 22 37899999999999999999886443 89999999 765332 3
Q ss_pred hccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCC
Q psy7891 498 IAMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSK 577 (929)
Q Consensus 498 ~~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 577 (929)
+. .|+++.|.|+++++++. ++|+|+|.+|.||+|+|++.+ ..+.
T Consensus 453 n~-----~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~---------~~tg--------------- 496 (554)
T 1yuw_A 453 NN-----LLGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVSAVD---------KSTG--------------- 496 (554)
T ss_dssp SE-----EEEEEEEECCCCCSTTC-------CCEEEEEEECTTCCEEEEEEE---------TTTC---------------
T ss_pred Cc-----EEEEEEEeCCCCCcccc-------cEEEEEEEEccCceEEEEEEe---------ccCC---------------
Confidence 43 46677899999876554 589999999999999999864 1110
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHH
Q psy7891 578 TDENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVE 657 (929)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~ 657 (929)
++. .+.++ ....+||+++++
T Consensus 497 -----------------------------------------------------~~~----~~~i~---~~~~~ls~~~i~ 516 (554)
T 1yuw_A 497 -----------------------------------------------------KEN----KITIT---NDKGRLSKEDIE 516 (554)
T ss_dssp -----------------------------------------------------CEE----EEEEC---CCSSCSCHHHHH
T ss_pred -----------------------------------------------------Cce----eEEEe---cCCCCCCHHHHH
Confidence 000 11211 233569999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy7891 658 KSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKL 694 (929)
Q Consensus 658 ~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L 694 (929)
++++++++|..+|+.++++.++||+||+|+|++|++|
T Consensus 517 ~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 517 RMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp HHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999887
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-76 Score=693.39 Aligned_cols=500 Identities=28% Similarity=0.432 Sum_probs=435.7
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
.+||||||||||+||++.+| .++++.|..|.+++||+|+|.+++++||.+|..+...+| ++++++||+||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g-~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGG-EVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECC-EEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 58999999999999999988 678999999999999999998889999999999999999 999999999998432
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
+.+++ ..++|+++++++|++|+..++.+++.++.++|||||+||++.||+++++|++
T Consensus 77 ----------------------~~~~g-~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~ 133 (509)
T 2v7y_A 77 ----------------------VEIEG-KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGR 133 (509)
T ss_dssp ----------------------EEETT-EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ----------------------EEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 11223 5789999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
.||++++++++||+|||++|++... . +.++||||+||||||++++++. .| .++++++.++..
T Consensus 134 ~AGl~~~~li~Ep~AAAlay~~~~~-----~-~~~vlV~D~GgGT~Dvsv~~~~------~g------~~~v~a~~g~~~ 195 (509)
T 2v7y_A 134 IAGLEVERIINEPTAAALAYGLDKE-----E-DQTILVYDLGGGTFDVSILELG------DG------VFEVKATAGDNH 195 (509)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTGGGS-----C-SEEEEEEEECSSCEEEEEEEEE------TT------EEEEEEEEEETT
T ss_pred HcCCCeEEEecCHHHHHHHHhhccC-----C-CCEEEEEECCCCeEEEEEEEEc------CC------eEEEEEecCCCC
Confidence 9999999999999999999998653 2 7899999999999999999976 24 789999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRAE 341 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~e 341 (929)
+||.+||..|++||.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++.++|+|++
T Consensus 196 lGG~d~d~~l~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~ 273 (509)
T 2v7y_A 196 LGGDDFDQVIIDYLVNQFKQEH--GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAK 273 (509)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH--SCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHH
Confidence 9999999999999999998844 45788889999999999999999999999888999887652 46888999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
|+++|+++++++..+|+++|+.+++...+|+.|+|+||+||+|+|++.|++.||.++..+.||++|||+|||++|+.+++
T Consensus 274 fe~l~~~~~~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~ 353 (509)
T 2v7y_A 274 FEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAG 353 (509)
T ss_dssp HHHHTHHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcC
Confidence 99999999999999999999999999899999999999999999999999999988889999999999999999999987
Q ss_pred CcccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhh
Q psy7891 422 GFKVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQI 498 (929)
Q Consensus 422 ~f~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~ 498 (929)
. ++++.+.|++|++||+++. ++ .+.+||++|+++|.+++.+|++..++ +.|.||+| +..... ++
T Consensus 354 ~--~~~~~~~dv~p~slgi~~~-----~~---~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~g-e~~~~~--~~ 420 (509)
T 2v7y_A 354 E--VKDVVLLDVTPLSLGIETM-----GG---VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQG-ERPMAA--DN 420 (509)
T ss_dssp C--CCCCCCCCBCSSEEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEE-SSSBGG--GS
T ss_pred C--ccCceEEEeeccccceeec-----CC---ceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEec-Cccccc--cC
Confidence 6 6788999999999999886 22 37899999999999999999876443 89999999 765322 34
Q ss_pred ccccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCC
Q psy7891 499 AMLGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKT 578 (929)
Q Consensus 499 ~~~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 578 (929)
..|+++.+.|+++++++. ++|+|+|++|.||+|+|++.+. .+.
T Consensus 421 -----~~lg~~~l~~i~~~~~g~-------~~i~v~f~id~~gil~v~a~~~---------~~g---------------- 463 (509)
T 2v7y_A 421 -----KSLGRFQLTGIPPAPRGV-------PQIEVTFDIDANGIVHVRAKDL---------GTN---------------- 463 (509)
T ss_dssp -----EEEEEEEEECCCCCCTTC-------SCEEEEEEECTTSCEEEEEEET---------TTC----------------
T ss_pred -----cEEEEEEEeCCCCCCCcc-------cEEEEEEEEcCCceEEEEEEEc---------CCC----------------
Confidence 345677889999876554 5899999999999999998641 100
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHH
Q psy7891 579 DENEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEK 658 (929)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~ 658 (929)
++. .+.++ .. .+||++++++
T Consensus 464 ----------------------------------------------------~~~----~~~i~---~~-~~l~~~~i~~ 483 (509)
T 2v7y_A 464 ----------------------------------------------------KEQ----SITIK---SS-SGLSEEEIQR 483 (509)
T ss_dssp ----------------------------------------------------CEE----EEEEC---SS-CSCCSHHHHH
T ss_pred ----------------------------------------------------cEE----EEEEE---ec-CCCCHHHHHH
Confidence 000 11221 12 5699999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHH
Q psy7891 659 SLSKLDSLNQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 659 ~~~~l~~~~~~D~~~~~~~eakN~LE 684 (929)
+++++.+|..+|+.++++.++||+||
T Consensus 484 ~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 484 MIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp HHHHHHHSCGGGGGGGGCCCC-----
T ss_pred HHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 99999999999999999999999997
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=556.18 Aligned_cols=381 Identities=32% Similarity=0.502 Sum_probs=348.5
Q ss_pred cCCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCC
Q psy7891 23 YGIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDS 102 (929)
Q Consensus 23 ~~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d 102 (929)
..+.+||||||||||+||++.+| .++++.|..|++++||+|+|.+++++||..|..+..++|.++++++|++||+.+++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred ccCCEEEEEcCCccEEEEEEECC-eeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 35789999999999999999988 78999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCceeeecCCCcceEEEEcCC-ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 103 PVVQLFKSRFPYYDIVADEERGTIVFKTND-NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 103 ~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~-~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+.++...+++||..+. .++...+.+...+ ...++|+++++++|+++++.++.+++..+.++|||||++|++.||++++
T Consensus 100 ~~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 178 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178 (404)
T ss_dssp HHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHH
Confidence 9999999999997654 3334445555544 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|++.|||+++++++||+|||++|+........ . +.++||||+||||||++++++. .+.+++++..
T Consensus 179 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~-~-~~~vlV~D~GgGT~dvsv~~~~------------~~~~~v~~~~ 244 (404)
T 3i33_A 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCAG-G-EKNVLIFDLGGGTFDVSILTIE------------DGIFEVKSTA 244 (404)
T ss_dssp HHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSS-S-CCEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEE
T ss_pred HHHHHcCCCeEEEeccHHHHHHHHHhhcccccC-C-CceEEEEECCCCcEEEEEEEEe------------CCeEEEEEEe
Confidence 999999999999999999999999987542211 2 7899999999999999999986 2378999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHH
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAE 341 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~e 341 (929)
++..+||.+||..|++++.++|..+ .+.++..+++.+.+|+.+||++|+.||.+....+.++.+.++.++.+.|+|++
T Consensus 245 ~~~~lGG~~~d~~l~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~ 322 (404)
T 3i33_A 245 GDTHLGGEDFDNRMVSHLAEEFKRK--HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRAR 322 (404)
T ss_dssp EETTCSHHHHHHHHHHHHHHHHHHH--HSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH--hCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHH
Confidence 9999999999999999999999884 44578889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh-CCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 342 FEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 342 fe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f-~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
|+++|.++++++..+|.++|+.+++...+|+.|+|+||+||+|+|++.|++.| +.++....||++|||+|||++|++++
T Consensus 323 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 402 (404)
T 3i33_A 323 FEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILI 402 (404)
T ss_dssp HHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999 58888999999999999999999987
Q ss_pred C
Q psy7891 421 T 421 (929)
Q Consensus 421 ~ 421 (929)
+
T Consensus 403 ~ 403 (404)
T 3i33_A 403 G 403 (404)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=549.12 Aligned_cols=379 Identities=24% Similarity=0.371 Sum_probs=336.8
Q ss_pred CCeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 24 GIAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 24 ~~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.+.+||||||||||+||++.+| +++++.|..|.+++||+|+|.+++++||..|..+..++|.++++++|++||+.++++
T Consensus 12 ~~~vvGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~ 90 (409)
T 4gni_A 12 ERVVIGITFGNSNSSIAHTVDD-KAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSV 90 (409)
T ss_dssp -CCEEEEEECSSEEEEEEEETT-EEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGC
T ss_pred CCcEEEEEcCCCeEEEEEEeCC-ceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccch
Confidence 4679999999999999999766 899999999999999999999999999999999999999999999999999998886
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCC-------ceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTND-------NELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE 176 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~-------~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~q 176 (929)
.++.....++. . . .++.+.|.+.. +..++++++++++|++|++.++.+++.++.++|||||++|++.|
T Consensus 91 ~~~~~~~~~~~--~-~--~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~ 165 (409)
T 4gni_A 91 DPTHNHASAHP--Q-E--AGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQ 165 (409)
T ss_dssp CCGGGTTSCCC--E-E--ETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHH
T ss_pred hhhhhccccce--e-c--CCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHH
Confidence 65544333322 1 1 24556666533 36899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEE
Q psy7891 177 RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 256 (929)
Q Consensus 177 R~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~ 256 (929)
|++|++||+.|||++++|++||+|||++|+..... ... +.++||||+||||||++++++. .+.++
T Consensus 166 r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~--~~~-~~~vlv~D~GgGT~dvsv~~~~------------~~~~~ 230 (409)
T 4gni_A 166 KAALIAAAAAADLEVLQLISEPAAAVLAYDARPEA--TIS-DKIIVVADLGGSRSDVTVLASR------------SGMYT 230 (409)
T ss_dssp HHHHHHHHHHTTCEEEEEEEHHHHHHHHTTC--------C-CEEEEEEEECSSCEEEEEEEEE------------TTEEE
T ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHHHHhccccc--CCC-CCEEEEEECCCCceEEEEEEEe------------CCeEE
Confidence 99999999999999999999999999999876421 112 7899999999999999999986 23799
Q ss_pred EEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEE
Q psy7891 257 VLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLL 336 (929)
Q Consensus 257 v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~ 336 (929)
++++.++..+||.+||..|+++|..+|..+++...+...+++.+.+|+.+||++|+.||.+..+.+.++++.++.++.+.
T Consensus 231 v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~ 310 (409)
T 4gni_A 231 ILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFAST 310 (409)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEE
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEE
Confidence 99999999999999999999999999998544225788899999999999999999999999999999999999999999
Q ss_pred EeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc--c------CCCCCchHHH
Q psy7891 337 VTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE--L------SKNLNTDEAA 408 (929)
Q Consensus 337 itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~--i------~~~~n~deaV 408 (929)
|||++|+++|+++++++..+|+++|+.+++...+|+.|+|+||+||+|+|++.|++.||.. + ...+||++||
T Consensus 311 itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~av 390 (409)
T 4gni_A 311 INRLRYETIARTVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQ 390 (409)
T ss_dssp EEHHHHHHHTHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999953 4 6889999999
Q ss_pred HhhHHHHHHhhcCCc
Q psy7891 409 ALGAVYKAADLSTGF 423 (929)
Q Consensus 409 A~GAa~~aa~~s~~f 423 (929)
|+|||++|+.....+
T Consensus 391 a~GAa~~~~~~~~~~ 405 (409)
T 4gni_A 391 ARGAALQASLIQEHH 405 (409)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhh
Confidence 999999999887553
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=525.79 Aligned_cols=376 Identities=31% Similarity=0.447 Sum_probs=335.4
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
.+||||||||||+||++.+| .++++.|..|.+++||+|+|. +++++||..|..+..++|.++++++|++||+.++++.
T Consensus 3 ~~vGIDlGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp CCCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred cEEEEEcCCCCEEEEEEECC-eeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 48999999999999999988 778999999999999999995 5789999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
++...+.+|+..+... .+...+.+++ ..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 82 ~~~~~~~~p~~~~~~~--~~~~~~~~~g-~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~ 158 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAAD--NGDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (383)
T ss_dssp HHHHTTTCSSEEEECS--SSBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcC--CCcEEEEECC-EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 9888888898654333 3445555544 689999999999999999999999988999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCC
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDR 264 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~ 264 (929)
+.||++++.+++||+|||++|+..... . +.++||||+||||||++++++.... . .+.++++++.++.
T Consensus 159 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~----~-~~~~lVvD~Gggttdvsv~~~~~~~--~------~~~~~v~~~~~~~ 225 (383)
T 1dkg_D 159 RIAGLEVKRIINEPTAAALAYGLDKGT----G-NRTIAVYDLGGGTFDISIIEIDEVD--G------EKTFEVLATNGDT 225 (383)
T ss_dssp HHTTCEESCCCBHHHHHHHHHTCCC-C----C-EEEEEEEEECSSCEEEEEEEEEC------------CCCEEEEEEEES
T ss_pred HHcCCceEEEeccHHHHHHHHHhccCC----C-CcEEEEEEcCCCeEEEEEEEEEecC--C------CCeEEEEEEeCCC
Confidence 999999999999999999999876431 2 6899999999999999999975111 0 2368899988888
Q ss_pred CcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeeccc----CcceEEEEeHH
Q psy7891 265 TLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLID----EIDFKLLVTRA 340 (929)
Q Consensus 265 ~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~----~~d~~~~itR~ 340 (929)
.+||.+||+.|++++.++|..+ ++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+ +.++.+.|+|+
T Consensus 226 ~lGG~~id~~l~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~ 303 (383)
T 1dkg_D 226 HLGGEDFDSRLINYLVEEFKKD--QGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303 (383)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHH--HCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHH
Confidence 9999999999999999999874 34577788999999999999999999999888888887664 25677899999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
+|+++|+++++++..+|.++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.++..+.||++|||+|||++|++++
T Consensus 304 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 304 KLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999888999999999999999999999999998888999999999999999998764
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=367.90 Aligned_cols=311 Identities=20% Similarity=0.258 Sum_probs=242.3
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecC--c-eeecHHHHHhhhhCCCChHhhhHHhcCCCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKG--E-RTFGEDAQIIGTRFPSNSYGYFLDLLGKSID 101 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~ 101 (929)
+.+|||||||+||+|++..+| ++. .+||+|+|... . .++|++|..+..++|.++...
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~----~~~------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~---------- 62 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG----IVV------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI---------- 62 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE----EEE------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE----------
T ss_pred CceEEEEcCcCcEEEEECCCC----EEE------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE----------
Confidence 358999999999999875433 222 27999999754 3 479999998877777664311
Q ss_pred CHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHH
Q psy7891 102 SPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 102 d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~ 181 (929)
+|+. +|.+ . ....++++++++|++++.. ..++ ...+|||||++|++.||++++
T Consensus 63 ----------~p~~-------~g~i----~--~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~ 115 (344)
T 1jce_A 63 ----------RPMR-------DGVI----A--DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAIL 115 (344)
T ss_dssp ----------CCEE-------TTEE----S--SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHH
T ss_pred ----------ecCC-------CCee----C--ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHH
Confidence 1221 1111 1 1124677777777666542 1233 478999999999999999999
Q ss_pred HHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEe
Q psy7891 182 KAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVG 261 (929)
Q Consensus 182 ~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~ 261 (929)
+|++.||++++.+++||+|||++|+.... . +..+||||+||||||++++.. | .+ + ..
T Consensus 116 ~a~~~aG~~~~~li~ep~Aaa~~~~~~~~-----~-~~~~lVvDiGggttdvsv~~~--------~------~~--~-~~ 172 (344)
T 1jce_A 116 DAGLEAGASKVFLIEEPMAAAIGSNLNVE-----E-PSGNMVVDIGGGTTEVAVISL--------G------SI--V-TW 172 (344)
T ss_dssp HHHHHTTCSEEEEEEHHHHHHHHTTCCTT-----S-SSCEEEEEECSSCEEEEEEET--------T------EE--E-EE
T ss_pred HHHHHcCCCeEeccCCHHHHHHhcCCCCC-----C-CceEEEEEeCCCeEEEEEEEc--------C------CE--E-ee
Confidence 99999999999999999999999986542 2 678999999999999999873 2 11 1 23
Q ss_pred cCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCc------eeEEEe--ecccCcce
Q psy7891 262 YDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNE------HFAQIE--GLIDEIDF 333 (929)
Q Consensus 262 ~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~------~~v~ie--~l~~~~d~ 333 (929)
++..+||.+||+.|++++.++|.. ++. ...||++|+.|+.... ..+.++ .+.++.++
T Consensus 173 ~~~~lGG~~id~~l~~~l~~~~~~------~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~ 237 (344)
T 1jce_A 173 ESIRIAGDEMDEAIVQYVRETYRV------AIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPR 237 (344)
T ss_dssp EEESCSHHHHHHHHHHHHHHHHCE------ECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEE
T ss_pred CCCCccChhHHHHHHHHHHHHhCc------ccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCce
Confidence 457899999999999999887643 221 4679999999997643 234443 45577788
Q ss_pred EEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCC--CCCc-cEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHh
Q psy7891 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVP--MDVI-SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAAL 410 (929)
Q Consensus 334 ~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~--~~~I-~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~ 410 (929)
.+.|+|++|+++++++++++.++|.++|+.++.. .+.+ +.|+|+||+|++|.|++.|++.|+.++....||++|||+
T Consensus 238 ~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~ 317 (344)
T 1jce_A 238 KLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAK 317 (344)
T ss_dssp EEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHH
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHH
Confidence 9999999999999999999999999999987532 2234 689999999999999999999999878888899999999
Q ss_pred hHHHHHHhhc
Q psy7891 411 GAVYKAADLS 420 (929)
Q Consensus 411 GAa~~aa~~s 420 (929)
||+++|+.++
T Consensus 318 Gaa~~a~~~~ 327 (344)
T 1jce_A 318 GAGMVLDKVN 327 (344)
T ss_dssp HHHHGGGCHH
T ss_pred HHHHHHhChH
Confidence 9999998665
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-28 Score=250.74 Aligned_cols=212 Identities=17% Similarity=0.280 Sum_probs=177.2
Q ss_pred EEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcccccee
Q psy7891 429 ITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQ 505 (929)
Q Consensus 429 ~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~ 505 (929)
.+.|++||++||++. |+ .+.+||++|++||++++.+|++..++ +.|.||+| ++... .+|..
T Consensus 2 ~l~DV~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~~--~dn~~----- 65 (219)
T 4e81_A 2 LLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRA--ADNKS----- 65 (219)
T ss_dssp CCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBG--GGSEE-----
T ss_pred eEEEecCcEEEEEEe-----CC---EEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEc-CCccc--ccCCE-----
Confidence 468999999999997 33 38899999999999999999987553 99999999 87642 24444
Q ss_pred eeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCc
Q psy7891 506 ISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPI 585 (929)
Q Consensus 506 i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 585 (929)
|++|.|.||++++++. ++|+|+|.+|.||+|+|++.+ .+++
T Consensus 66 Lg~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~V~a~d---------~~tg----------------------- 106 (219)
T 4e81_A 66 LGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD---------KNSG----------------------- 106 (219)
T ss_dssp EEEEEEECCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC-----------------------
T ss_pred EEEEEEeCCCCCCCCC-------ceEEEEEEeCCCCCEeeeeec---------cccC-----------------------
Confidence 5667899999887665 689999999999999999874 1110
Q ss_pred ccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHh
Q psy7891 586 NEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDS 665 (929)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~ 665 (929)
++. .+.|+ .-.+||++++++|++.+++
T Consensus 107 ---------------------------------------------~~~----~i~I~----~~~~Ls~eeI~~m~~~a~~ 133 (219)
T 4e81_A 107 ---------------------------------------------KEQ----KITIK----ASSGLNEDEIQKMVRDAEA 133 (219)
T ss_dssp ---------------------------------------------CEE----EEEEC----TTCSCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------ccc----eEeee----ccccccHHHHHHHHHHHHH
Confidence 000 12221 1246999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhch
Q psy7891 666 LNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLV 745 (929)
Q Consensus 666 ~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~ 745 (929)
|..+|+.++++.+++|.||+|+|++|..|+ ++.+++++++|+.|...|.++++||+++ ++++|++++++|+.++
T Consensus 134 ~~~eD~~~r~~~e~kn~le~~i~~~~~~l~--~~~~~l~~~~k~~i~~~l~~~~~~L~~~----~~~~i~~~~~~L~~~~ 207 (219)
T 4e81_A 134 NAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTALETALKGE----DKAAIEAKMQELAQVS 207 (219)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 3888999999999999999999999964 6999999999999999
Q ss_pred hhHHHHHHh
Q psy7891 746 VPIWERHRE 754 (929)
Q Consensus 746 ~pi~~R~~e 754 (929)
.||..|+++
T Consensus 208 ~~i~~~~~~ 216 (219)
T 4e81_A 208 QKLMEIAQQ 216 (219)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhc
Confidence 999999876
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=244.90 Aligned_cols=211 Identities=15% Similarity=0.247 Sum_probs=174.3
Q ss_pred EEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceeee
Q psy7891 431 KDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQIS 507 (929)
Q Consensus 431 ~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i~ 507 (929)
.|++||+|||++. |+ .+.+||++|++||++++.+|++..++ |.|.|||| ++... .+| ..|+
T Consensus 1 ~Dv~p~slGie~~-----~g---~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qG-e~~~~--~~n-----~~Lg 64 (227)
T 1u00_A 1 MDVIPLSLGLETM-----GG---LVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQG-ERELV--QDC-----RSLA 64 (227)
T ss_dssp CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEEC-SSSBG--GGS-----EEEE
T ss_pred CCcccceEEEEEe-----CC---EEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEec-CCccC--CCC-----CEEE
Confidence 3789999999987 22 37899999999999999999987553 99999999 76532 233 4566
Q ss_pred eEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCccc
Q psy7891 508 KFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPINE 587 (929)
Q Consensus 508 ~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 587 (929)
+|.|.||++++++. ++|+|+|.+|.||+|+|++.+ ..++
T Consensus 65 ~f~l~gi~~~p~G~-------~~I~Vtf~iD~nGiL~V~a~d---------~~tg------------------------- 103 (227)
T 1u00_A 65 RFALRGIPALPAGG-------AHIRVTFQVDADGLLSVTAME---------KSTG------------------------- 103 (227)
T ss_dssp EEEECCCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC-------------------------
T ss_pred EEEEeCCCCCCCCc-------eEEEEEEEECCCCcEEEEeec---------cccc-------------------------
Confidence 77999999876554 589999999999999998863 1100
Q ss_pred ccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHhhh
Q psy7891 588 AVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSLN 667 (929)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~~~ 667 (929)
++. .+.++ .. .+||.++++++++++..|.
T Consensus 104 -------------------------------------------~~~----~i~i~---~~-~~Ls~eei~~~~~~~~~~~ 132 (227)
T 1u00_A 104 -------------------------------------------VEA----SIQVK---PS-YGLTDSEIASMIKDSMSYA 132 (227)
T ss_dssp -------------------------------------------CEE----EEEEC---CC-SCCCHHHHHHHHHHHHHTH
T ss_pred -------------------------------------------ccc----eEEEE---ec-cCCCHHHHHHHHHHHHhhh
Confidence 001 12222 11 4599999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhh
Q psy7891 668 QIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVP 747 (929)
Q Consensus 668 ~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~p 747 (929)
.+|+.++++.+++|+||+|||++|+.|+ ++.+++++++|+.|...|+++++|||++ ++++|++++++|++++.|
T Consensus 133 ~~D~~~~e~~e~kn~le~~i~~~~~~l~--~~~~~~~~~~k~~i~~~l~~~~~wl~~~----d~~~~~~~~~~L~~~~~~ 206 (227)
T 1u00_A 133 EQDVKARMLAEQKVEAARVLESLHGALA--ADAALLSAAERQVIDDAAAHLSEVAQGD----DVDAIEQAIKNVDKQTQD 206 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995 3778999999999999999999999943 489999999999999999
Q ss_pred HHHHHHhh
Q psy7891 748 IWERHREH 755 (929)
Q Consensus 748 i~~R~~e~ 755 (929)
|..|++..
T Consensus 207 i~~r~~~~ 214 (227)
T 1u00_A 207 FAARRMDQ 214 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=258.71 Aligned_cols=231 Identities=17% Similarity=0.166 Sum_probs=167.8
Q ss_pred eeeHHHHHHHHHHHHHHHHHhhcccccceEE--EEecCCCCHHHHHHHHHHHHHc--------C------CcEEEEechh
Q psy7891 135 LYHVEELVAMLLHKAREYASVSAGQVINEAV--IIVPGYFNQIERQSMLKAGELA--------G------LKVLQLMNDY 198 (929)
Q Consensus 135 ~~~~eel~a~~L~~lk~~a~~~~~~~v~~~V--ItVPa~f~~~qR~al~~Aa~~A--------G------l~~~~li~Ep 198 (929)
.+..+...++++..|+..++...+.. .++| |+||++|+..||+++++|+..+ | +..+++++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 34456777888888877653333333 5699 9999999999999999997765 4 3558899999
Q ss_pred HHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHH
Q psy7891 199 TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDF 278 (929)
Q Consensus 199 tAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~ 278 (929)
+|||++| +... .+.+. ..+++|||+||||||++++++. .| . .+.+..++..+||.+|++.|+++
T Consensus 173 ~AAa~~~-l~~~-~~~~~-~~~vlVvDIGgGTtDv~vi~~~------~g------~-~v~~~s~~~~lGg~~i~~~I~~~ 236 (346)
T 2fsj_A 173 VGAALYL-LNQG-IIEQQ-PGYGVVIDVGSRTTDVLTINLM------DM------E-PVVELSFSLQIGVGDAISALSRK 236 (346)
T ss_dssp HHHHHHH-HHHT-SSCCC-SSEEEEEEECSSCEEEEEEETT------TT------E-ECGGGCEEESCCHHHHHHHHHHH
T ss_pred HHHHHHh-hccc-ccccc-CCcEEEEECCCCcEEEEEEEec------CC------E-EEeecCCCcchhHHHHHHHHHHH
Confidence 9999998 3221 12112 4789999999999999999853 12 2 44444466789999999999998
Q ss_pred HHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHH-HHHHHHHHhHHHHHH
Q psy7891 279 LGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEF-EALNEDLFDRVGYPV 357 (929)
Q Consensus 279 l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~ef-e~l~~~l~~~i~~~i 357 (929)
+.+++... .++. ...++ .. ..+.+ .+. .++++++ +++++++++++.+.|
T Consensus 237 i~~~~g~~----~~i~---------~~~~e-------~~--~~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i 286 (346)
T 2fsj_A 237 IAKETGFV----VPFD---------LAQEA-------LS--HPVMF----RQK----QVGGPEVSGPILEDLANRIIENI 286 (346)
T ss_dssp HHHHHCCC----CCHH---------HHHHH-------TT--SCEEE----TTE----EECSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC----cCCC---------HHHHh-------cC--CeEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHH
Confidence 87766430 0111 11122 11 12222 222 3569999 999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc-c-CCCCCchHHHHhhHHHHHH
Q psy7891 358 EQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE-L-SKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 358 ~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~-i-~~~~n~deaVA~GAa~~aa 417 (929)
+++|+.+ .++++.|+|+||++++ +++.|++.|+.. + ....||++|+|+|+..++.
T Consensus 287 ~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 287 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 9999876 5678999999999999 999999999832 1 2267999999999997764
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=236.03 Aligned_cols=203 Identities=17% Similarity=0.251 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCC
Q psy7891 139 EELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNP 218 (929)
Q Consensus 139 eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~ 218 (929)
.+.+..+|+++++.++...+..+..+|+++|++|+..+|+++.++++.+|+++..++.||+|+|++|+..
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~---------- 139 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN---------- 139 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC----------
Confidence 3556788999999998888888899999999999999999999999999999999999999999988742
Q ss_pred cEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHH
Q psy7891 219 VHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPR 298 (929)
Q Consensus 219 ~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~ 298 (929)
..+|+|+|||||+++++. .| .+ + ......+||.+||..|++++.- +
T Consensus 140 -~~~viDiGggst~~~~~~--------~g------~~--~-~~~~~~~Gg~~~~~~l~~~l~~----------~------ 185 (272)
T 3h1q_A 140 -DGIVVDIGGGTTGIAVIE--------KG------KI--T-ATFDEPTGGTHLSLVLAGSYKI----------P------ 185 (272)
T ss_dssp -SEEEEEECSSCEEEEEEE--------TT------EE--E-EECCBSCCHHHHHHHHHHHHTC----------C------
T ss_pred -CEEEEEECCCcEEEEEEE--------CC------EE--E-EEecCCCcHHHHHHHHHHHhCC----------C------
Confidence 259999999999999986 13 22 2 3466789999999999988731 1
Q ss_pred HHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEc
Q psy7891 299 AVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVG 378 (929)
Q Consensus 299 ~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvG 378 (929)
...|+++|+.++ ++++|++++.++++++...+.+.|+..+ +++.|+|+|
T Consensus 186 -----~~~ae~~k~~~~----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~G 234 (272)
T 3h1q_A 186 -----FEEAETIKKDFS----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVG 234 (272)
T ss_dssp -----HHHHHHHHHSST----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEES
T ss_pred -----HHHHHHHHHhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEEC
Confidence 346888888876 5899999999999999999999998664 477999999
Q ss_pred CCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 379 AGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 379 G~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
|++++|.+++.|++.|+.++..+.||++++|+|||++|
T Consensus 235 G~a~~~~l~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 235 GTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp GGGGSTTHHHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred CccchhhHHHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 99999999999999999888889999999999999864
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=256.52 Aligned_cols=319 Identities=18% Similarity=0.135 Sum_probs=204.0
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPV 104 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~ 104 (929)
..++|||+||++++++++..| .+.+ +..|.+.+|+.+ +.++ ...++..+...+|+++++.
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~~-~~~i--~~~g~~~~ps~~-~~~g-----------~i~d~~~~~~~ik~~~~~~----- 72 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSGN-PPAL--KALASRPTPPGL-LMEG-----------MVAEPAALAQEIKELLLEA----- 72 (377)
T ss_dssp CCCEEEEECSSEEEEEEEETT-TTEE--EEEEEEECCTTS-EETT-----------EESCHHHHHHHHHHHHHHH-----
T ss_pred CceEEEEeCCCeEEEEEEeCC-ceEE--EEEEeEECCCCc-ccCC-----------CcCCHHHHHHHHHHHHHHc-----
Confidence 468999999999999999865 4433 334455555532 1222 3355667778888888651
Q ss_pred HHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHH--------
Q psy7891 105 VQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIE-------- 176 (929)
Q Consensus 105 v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~q-------- 176 (929)
.. .... ....-+........+.- ..++.+++-..+ +..++.+++.++.++||.+|. .+.+
T Consensus 73 -~~---~~~~-v~~~i~~~~~~~~~~~~-~~v~~~el~~~i----~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~ 140 (377)
T 2ych_A 73 -RT---RKRY-VVTALSNLAVILRPIQV-PKMPLKEMEEAV----RWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQ 140 (377)
T ss_dssp -TC---CCCE-EEEEECGGGCEEEEEEE-ECCCHHHHHHHH----HHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSE
T ss_pred -CC---Ccce-EEEEecCCcEEEEEEEC-CCCCHHHHHHHH----HHHHhhcCCCChhHceEEEEE--eCCCCCCCCcce
Confidence 00 0000 01111111111111111 357888876543 446777888899999999983 3322
Q ss_pred ------------HHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccc
Q psy7891 177 ------------RQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTK 244 (929)
Q Consensus 177 ------------R~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~ 244 (929)
.+++++|++.|||++..++.||+|||++|+..... .. +..++|||+||||||++++.
T Consensus 141 ~~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~---~~-~~~~~vvDiGggttdi~i~~------- 209 (377)
T 2ych_A 141 VQVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAE---EP-DRVFLVLDIGAESTSLVLLR------- 209 (377)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHT---ST-TCEEEEEEECSSCEEEEEEE-------
T ss_pred eEEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhccc---cc-CCeEEEEEECCCcEEEEEEE-------
Confidence 38999999999999999999999999998754321 12 57899999999999999987
Q ss_pred cCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEE
Q psy7891 245 ERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQI 324 (929)
Q Consensus 245 ~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~i 324 (929)
.| .+. ..++..+||.+||..|++.+ .. + +.+||++|+.++.........
T Consensus 210 -~g------~~~---~~~~~~~GG~~i~~~i~~~~--------~~--~-----------~~~aE~~K~~~~~~~~~~~~~ 258 (377)
T 2ych_A 210 -GD------KPL---AVRVLTLSGKDFTEAIARSF--------NL--D-----------LLAAEEVKRTYGMATLPTEDE 258 (377)
T ss_dssp -TT------EEE---EEEEESCSHHHHHHHHHHHT--------TC--C-----------HHHHHHHHHHTC---------
T ss_pred -CC------EEE---EEEeeechHHHHHHHHHHHh--------CC--C-----------HHHHHHHHhhccccccccccc
Confidence 13 221 23456899999999998732 11 1 457999999887543211111
Q ss_pred eecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCC-
Q psy7891 325 EGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKN- 401 (929)
Q Consensus 325 e~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~- 401 (929)
+..++-.+....++|++|+++++++++++...|+++|+.. +.....++.|+|+||++++|.|++.|++.|+.++...
T Consensus 259 ~~~i~~~~~~~~i~~~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~ 338 (377)
T 2ych_A 259 ELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVN 338 (377)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECC
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecC
Confidence 1111111245689999999999999999999999999853 5666689999999999999999999999998533221
Q ss_pred -------------------CCchHHHHhhHHHHHH
Q psy7891 402 -------------------LNTDEAAALGAVYKAA 417 (929)
Q Consensus 402 -------------------~n~deaVA~GAa~~aa 417 (929)
.+|..++|.|+|+++.
T Consensus 339 P~~~v~~~~~~~~~~~l~~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 339 PWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGV 373 (377)
T ss_dssp GGGGSBCCTTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhcccCcccCCHHHHHhhhHHHHHHHHHHHcCC
Confidence 1344567888888764
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-24 Score=245.26 Aligned_cols=242 Identities=12% Similarity=0.054 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHhhccc--ccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHH-hcccccccCCCCC
Q psy7891 142 VAMLLHKAREYASVSAGQ--VINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALN-YGIFKRKDFNETN 217 (929)
Q Consensus 142 ~a~~L~~lk~~a~~~~~~--~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~-y~~~~~~~~~~~~ 217 (929)
+..+++|+.. ..++. ....+|||+|++|+..+|+++.+++ +.+|++.+.+++||+|||++ |... .+...
T Consensus 89 ~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~---~~~~~- 161 (418)
T 1k8k_A 89 MERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSR---QVGER- 161 (418)
T ss_dssp HHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGST---TCCSC-
T ss_pred HHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhccc---ccCCC-
Confidence 3445555542 22332 2457999999999999999999999 99999999999999999987 5311 11112
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
..+.||||+|+||||++++. .| ..+.....+..+||++||..|+++|..++.. .....
T Consensus 162 ~~~glVvDiG~gtt~v~~v~--------~G-------~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~-----~~~~~-- 219 (418)
T 1k8k_A 162 TLTGTVIDSGDGVTHVIPVA--------EG-------YVIGSCIKHIPIAGRDITYFIQQLLRDREVG-----IPPEQ-- 219 (418)
T ss_dssp CCCEEEEEESSSCEEEEEEE--------TT-------EECGGGCEEESCSHHHHHHHHHHHHHTTCCC-----CCGGG--
T ss_pred CCeEEEEEcCCCceEEEEeE--------CC-------EEcccceEEEeCcHHHHHHHHHHHHHhcCCC-----CCCHH--
Confidence 23779999999999999985 24 1122222446899999999999999865431 11111
Q ss_pred HHHHHHHHHHHHhhhhccCCC-----------------ceeEEEeecccCcceEEEEeHHHH---HHHHHHH------Hh
Q psy7891 298 RAVAKLFKEAGRLKNVLSANN-----------------EHFAQIEGLIDEIDFKLLVTRAEF---EALNEDL------FD 351 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~-----------------~~~v~ie~l~~~~d~~~~itR~ef---e~l~~~l------~~ 351 (929)
-...++++|+.++... ...+.++....+....+.|+++.| |.++.|. +.
T Consensus 220 -----~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~ 294 (418)
T 1k8k_A 220 -----SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQ 294 (418)
T ss_dssp -----HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCC
T ss_pred -----HHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCC
Confidence 1245677777665321 124566665556667899999999 5555543 25
Q ss_pred HHHHHHHHHHHHcC--CCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc------------------------cCCCCCch
Q psy7891 352 RVGYPVEQALKSSA--VPMDVISQVILVGAGTRVPKVQEKITKVVGVE------------------------LSKNLNTD 405 (929)
Q Consensus 352 ~i~~~i~~~L~~a~--~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~------------------------i~~~~n~d 405 (929)
.+.++|.++|..+. +..+.++.|+|+||+|++|.++++|.+.|+.. +..+.++.
T Consensus 295 ~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~ 374 (418)
T 1k8k_A 295 PISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQR 374 (418)
T ss_dssp CHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccc
Confidence 68899999999875 44556789999999999999999998876521 12234677
Q ss_pred HHHHhhHHHHHH
Q psy7891 406 EAAALGAVYKAA 417 (929)
Q Consensus 406 eaVA~GAa~~aa 417 (929)
.++.+||+++|.
T Consensus 375 ~~~w~Ggsilas 386 (418)
T 1k8k_A 375 YAVWFGGSMLAS 386 (418)
T ss_dssp THHHHHHHHHTT
T ss_pred cceeHhHHHHHc
Confidence 999999999986
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=240.39 Aligned_cols=306 Identities=12% Similarity=0.131 Sum_probs=194.4
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceE-EEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPT-LVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS-~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
...|+||+||.++++++...+.|.-++.+-.|....++ .+.+..+..++|++|.... . ...+
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~--~~~~----------- 67 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----G--ILTL----------- 67 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHT----T--SEEE-----------
T ss_pred CceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcC----c--ccce-----------
Confidence 45789999999999999876655444433333222221 1222234567888886531 0 0001
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccc--cceEEEEecCCCCHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSML 181 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~--v~~~VItVPa~f~~~qR~al~ 181 (929)
.+|. ..+..... +.+..+++|+.. ..++.. -..+|||+|++++..+|+++.
T Consensus 68 -------~~Pi----------------~~G~i~d~-d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~ 120 (375)
T 2fxu_A 68 -------KYPI----------------EHGIITNW-DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMT 120 (375)
T ss_dssp -------ECSE----------------ETTEECCH-HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHH
T ss_pred -------eccc----------------cCCcccCH-HHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHH
Confidence 1111 11211222 234455555542 223322 346999999999999999888
Q ss_pred HHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEE
Q psy7891 182 KAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGV 260 (929)
Q Consensus 182 ~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~ 260 (929)
+++ +.+|++.+.+++||+|||++|+. ...||||+|+|||+++.+. .| +.+...
T Consensus 121 e~~fe~~g~~~~~~~~e~~aaa~a~g~-----------~~~lVvDiG~gtt~v~~v~--------~G-------~~~~~~ 174 (375)
T 2fxu_A 121 QIMFETFNVPAMYVAIQAVLSLYASGR-----------TTGIVLDSGDGVTHNVPIY--------EG-------YALPHA 174 (375)
T ss_dssp HHHHHTTCCSEEEEEEHHHHHHHHTTC-----------SSEEEEEECSSCEEEEEEE--------TT-------EECGGG
T ss_pred HHHHHhcCcceEEEccchheeeeecCC-----------CeEEEEEcCCCceEEeEeE--------CC-------EEeccc
Confidence 775 88899999999999999999873 3579999999999998765 24 222222
Q ss_pred ecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhc----------------cCCCceeEEE
Q psy7891 261 GYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVL----------------SANNEHFAQI 324 (929)
Q Consensus 261 ~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~L----------------S~~~~~~v~i 324 (929)
.....+||++||..|+++|..+.. .+.. . .-...++++|+.+ +......+.+
T Consensus 175 ~~~~~~GG~~lt~~l~~~l~~~~~-------~~~~-~----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~l 242 (375)
T 2fxu_A 175 IMRLDLAGRDLTDYLMKILTERGY-------SFVT-T----AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 242 (375)
T ss_dssp CEEESCCHHHHHHHHHHHHHHHTC-------CCCS-H----HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEEC
T ss_pred eEEeccCHHHHHHHHHHHHHhcCC-------CCCc-H----HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEEC
Confidence 334689999999999999987521 1110 0 0012334444433 2222222333
Q ss_pred eecccCcceEEEEeHHHHH---HHHHHH-----HhHHHHHHHHHHHHcC--CCCCCccEEEEEcCCcCCHHHHHHHHHHh
Q psy7891 325 EGLIDEIDFKLLVTRAEFE---ALNEDL-----FDRVGYPVEQALKSSA--VPMDVISQVILVGAGTRVPKVQEKITKVV 394 (929)
Q Consensus 325 e~l~~~~d~~~~itR~efe---~l~~~l-----~~~i~~~i~~~L~~a~--~~~~~I~~ViLvGG~sriP~v~~~l~~~f 394 (929)
+ ++ ..+.|+++.|. .++.|. ...+.++|.++|..+. +....++.|+|+||+|++|.++++|.+.+
T Consensus 243 p---dg--~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el 317 (375)
T 2fxu_A 243 P---DG--QVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEI 317 (375)
T ss_dssp T---TS--CEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHH
T ss_pred C---CC--CEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHH
Confidence 2 22 35788998883 344442 2458888888888663 22345678999999999999999999988
Q ss_pred C--------CccCCCCCchHHHHhhHHHHHH
Q psy7891 395 G--------VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 395 ~--------~~i~~~~n~deaVA~GAa~~aa 417 (929)
+ .++....||+.++++||+++|.
T Consensus 318 ~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 318 TALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 6 1333567899999999999997
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=229.28 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCc
Q psy7891 175 IERQSMLKAGELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQ 254 (929)
Q Consensus 175 ~qR~al~~Aa~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~ 254 (929)
..-+.+.+|++.|||++..++.||+|||++|...... +..+++||+||||||++|+. .| .
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~------~~gv~vvDiGggttdisi~~--------~g------~ 227 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEK------DRGVVVVNLGYNFTGLIAYK--------NG------V 227 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHH------HHCEEEEEECSSSEEEEEEE--------TT------E
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccc------cCCEEEEEECCCcEEEEEEE--------CC------E
Confidence 4567899999999999999999999999998654322 56899999999999999987 24 2
Q ss_pred EEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCC-----CceeEEEeeccc
Q psy7891 255 VSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSAN-----NEHFAQIEGLID 329 (929)
Q Consensus 255 ~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~-----~~~~v~ie~l~~ 329 (929)
+.. ..+..+||++||+.|+..+.- ...+||++|+.++.. .+..+.++...+
T Consensus 228 ~~~---~~~i~~GG~~it~dIa~~l~~---------------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~ 283 (419)
T 4a2a_A 228 PIK---ISYVPVGMKHVIKDVSAVLDT---------------------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG 283 (419)
T ss_dssp EEE---EEEESCCHHHHHHHHHHHHTC---------------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS
T ss_pred EEE---EEecccHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHhccCcccCCCCceEEEeecCC
Confidence 322 335689999999999876521 145799999988642 344677776542
Q ss_pred CcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCC------CCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc--CC-
Q psy7891 330 EIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV------PMDVISQVILVGAGTRVPKVQEKITKVVGVEL--SK- 400 (929)
Q Consensus 330 ~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~------~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i--~~- 400 (929)
.....|+|++|++++++.++++...|.++|+.++. ....++.|+|+||+|++|.|++.+++.||.++ ..
T Consensus 284 --~~~~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~ 361 (419)
T 4a2a_A 284 --NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCY 361 (419)
T ss_dssp --CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCG
T ss_pred --ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEec
Confidence 46789999999999999999999999999999987 34568999999999999999999999999533 22
Q ss_pred ----C----------CCchHHHHhhHHHHHHhh
Q psy7891 401 ----N----------LNTDEAAALGAVYKAADL 419 (929)
Q Consensus 401 ----~----------~n~deaVA~GAa~~aa~~ 419 (929)
+ -+|..+++.|.+++++..
T Consensus 362 ~~~~p~~~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 362 ANSDRPSIINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp GGSSSCCCBTCHHHHTCGGGHHHHHTTCC----
T ss_pred CCCCchhccCcccccCCchHHHHHHHHHHHhhc
Confidence 1 378999999999887643
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=194.79 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=126.1
Q ss_pred ceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcccc
Q psy7891 426 KKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLG 502 (929)
Q Consensus 426 k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g 502 (929)
..|.+.|++||+|||+|. |+ .+.+||++|++||++++.+|++..++ +.|.||+| ++... .+|.
T Consensus 18 ~~f~l~DV~P~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqG-E~~~~--~dn~--- 83 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETL-----GG---VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQG-EREMA--GDNK--- 83 (182)
T ss_dssp ------CBCSSCEEEECT-----TS---BEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEES-SCSBG--GGSE---
T ss_pred CCEEEEEecCCEEEEEEe-----CC---EEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEc-Ccccc--ccCc---
Confidence 468899999999999997 33 27899999999999999999987553 99999999 76532 2444
Q ss_pred ceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCC
Q psy7891 503 TKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENE 582 (929)
Q Consensus 503 ~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 582 (929)
.|++|.|.||++++++. ++|+|+|++|.||+|+|++.+ .+++
T Consensus 84 --~LG~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~VsA~d---------~~tg-------------------- 125 (182)
T 3n8e_A 84 --LLGQFTLIGIPPAPRGV-------PQIEVTFDIDANGIVHVSAKD---------KGTG-------------------- 125 (182)
T ss_dssp --EEEEEEECCCCCCCTTC-------SCEEEEEEECTTCCEEEEEEE---------TTTC--------------------
T ss_pred --eEEEEEEcCCCCCCCCC-------eeEEEEEEEecCCEEEEEEEE---------cCCC--------------------
Confidence 46677899999887665 689999999999999999874 1110
Q ss_pred CCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHH
Q psy7891 583 KPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSK 662 (929)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~ 662 (929)
++. .|.|+ .. ..||++++++++++
T Consensus 126 ------------------------------------------------~~~----~i~I~---~~-~~Ls~eei~~mi~~ 149 (182)
T 3n8e_A 126 ------------------------------------------------REQ----QIVIQ---SS-GGLSKDDIENMVKN 149 (182)
T ss_dssp ------------------------------------------------CEE----EEEES---CC-CCCCHHHHHHHHHH
T ss_pred ------------------------------------------------CEe----eEEEe---cC-ccCCHHHHHHHHHH
Confidence 000 12222 23 67999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q psy7891 663 LDSLNQIEHAKVRKEKALNSLESLLFDAKSKL 694 (929)
Q Consensus 663 l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L 694 (929)
+++|..+|+.++++.++||+||+|+|++|+.|
T Consensus 150 a~~~~~eD~~~~~~~e~kn~le~~iy~~~~~l 181 (182)
T 3n8e_A 150 AEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181 (182)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999877
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=215.56 Aligned_cols=227 Identities=13% Similarity=0.124 Sum_probs=147.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCC-CCHH--HH--HHHHHH------------HHHcCCcEEEEec
Q psy7891 134 ELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGY-FNQI--ER--QSMLKA------------GELAGLKVLQLMN 196 (929)
Q Consensus 134 ~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~-f~~~--qR--~al~~A------------a~~AGl~~~~li~ 196 (929)
..+++..+++.+ ..|+. +.. .+..+ ++|+++|.. |... || .++.+- ++.+++..+.++.
T Consensus 72 ~~~~~~~l~~i~-~aL~~-~~~-~~~~~-~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 147 (320)
T 2zgy_A 72 WQYSDVNVVAVH-HALLT-SGL-PVSEV-DIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMP 147 (320)
T ss_dssp GGGSHHHHHHHH-HHHHH-HSC-CSCEE-EEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEE
T ss_pred ccchHHHHHHHH-HHHHH-cCC-CCceE-EEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEec
Confidence 467788777654 44443 211 22333 699999987 6531 21 112111 2345567889999
Q ss_pred hhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHH
Q psy7891 197 DYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLR 276 (929)
Q Consensus 197 EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~ 276 (929)
||.||+++|+.... . +..++|+|+||||||+++++ .| .+.+..+.++..+||.+||+.|+
T Consensus 148 e~~aa~~~~~~~~~-----~-~~~~~vvDiGggttd~~v~~--------~g------~~~v~~~~~~~~lGg~~~~~~I~ 207 (320)
T 2zgy_A 148 ESIPAGYEVLQELD-----E-LDSLLIIDLGGTTLDISQVM--------GK------LSGISKIYGDSSLGVSLVTSAVK 207 (320)
T ss_dssp SSHHHHHHHHHHSC-----T-TCEEEEEEECSSCEEEEEEE--------GG------GCCEEEEEEECSCCTHHHHHHHH
T ss_pred CcHHHHHhhhcccc-----C-CCCEEEEEcCCCeEEEEEEe--------CC------eeEEeeecCCccccHHHHHHHHH
Confidence 99999998873211 2 67999999999999999987 13 45566667778999999999999
Q ss_pred HHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHh-hhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHH
Q psy7891 277 DFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRL-KNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGY 355 (929)
Q Consensus 277 ~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~-K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~ 355 (929)
+++.++ +.++. . ..++++ |.. ... .......+ . .-.++++.+++.+.++.+..
T Consensus 208 ~~l~~~-------~~~i~--~-------~~ae~~lk~~---~~~--~~~~~~i~---~--~~~~~~~~~~i~~~~~~~~~ 261 (320)
T 2zgy_A 208 DALSLA-------RTKGS--S-------YLADDIIIHR---KDN--NYLKQRIN---D--ENKISIVTEAMNEALRKLEQ 261 (320)
T ss_dssp HHTTCC-------SBGGG--H-------HHHHHHHHTT---TCH--HHHHHHSS---S--SCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHc-------CCCCC--H-------HHHHHHHHHh---hhh--hcccceec---C--chhhHHHHHHHHHHHHHHHH
Confidence 998642 11222 1 123333 221 000 00000000 0 01345555666666666666
Q ss_pred HHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCC---ccCCCCCchHHHHhhHHHHH
Q psy7891 356 PVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGV---ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 356 ~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~---~i~~~~n~deaVA~GAa~~a 416 (929)
.|.+.+... .+++.|+|+||++++ +++.|++.|+. ++....||++|+|+||+++|
T Consensus 262 ~i~~~i~~~----~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 262 RVLNTLNEF----SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HHHHHHTTC----CCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHhh----cCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 666666542 578999999999998 99999999996 57788999999999999875
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=166.45 Aligned_cols=148 Identities=20% Similarity=0.293 Sum_probs=117.6
Q ss_pred EEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceee
Q psy7891 430 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 506 (929)
Q Consensus 430 v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i 506 (929)
+.|++||++||+|. |+ .+.+||++|++||++++.+|++..++ +.|.||+| ++... .+|. .|
T Consensus 2 ~~Dv~p~slGi~~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqG-e~~~~--~dn~-----~L 65 (152)
T 3h0x_A 2 NADVNALTLGIETT-----GG---VMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEG-ERAMS--KDNN-----LL 65 (152)
T ss_dssp -CCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEES-SCSBG--GGSE-----EE
T ss_pred ccceeccEEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEc-Ccccc--ccCc-----EE
Confidence 57999999999997 33 37899999999999999999987554 89999999 76532 2444 45
Q ss_pred eeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCcc
Q psy7891 507 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 586 (929)
Q Consensus 507 ~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 586 (929)
+.|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+++
T Consensus 66 G~f~l~gipp~p~G~-------~~I~Vtf~iD~nGiL~V~a~d---------~~tg------------------------ 105 (152)
T 3h0x_A 66 GKFELTGIPPAPRGV-------PQIEVTFALDANGILKVSATD---------KGTG------------------------ 105 (152)
T ss_dssp EEEEECCCCCCCTTC-------SCEEEEEEECTTSEEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------ceEEEEEEEcCCCEEEEEEEE---------cCCC------------------------
Confidence 667899999887665 689999999999999999874 1110
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHhh
Q psy7891 587 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 666 (929)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~~ 666 (929)
++. .+.+ ..+...||+++++++++.+++|
T Consensus 106 --------------------------------------------~~~----~i~I---~~~~~~ls~~ei~~~~~~a~~~ 134 (152)
T 3h0x_A 106 --------------------------------------------KSE----SITI---TNDKGRLTQEEIDRMVEEAEKF 134 (152)
T ss_dssp --------------------------------------------CEE----EEEE---ECCTTCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------cEe----EEEE---ecCCCCCCHHHHHHHHHHHHHH
Confidence 001 1222 2233579999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy7891 667 NQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 667 ~~~D~~~~~~~eakN~LE 684 (929)
..+|+..+++.++||+||
T Consensus 135 ~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 135 ASEDASIKAKVESRNKLE 152 (152)
T ss_dssp HHHHHHHHHHHHCSCCCC
T ss_pred HHhhHHHHHHHHHHhhcC
Confidence 999999999999999987
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=165.97 Aligned_cols=148 Identities=20% Similarity=0.317 Sum_probs=114.1
Q ss_pred EEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceee
Q psy7891 430 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 506 (929)
Q Consensus 430 v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i 506 (929)
+.|++||++||+|. |+ .+.+||++|++||++++.+|++..++ +.|.||+| ++... .+|. .|
T Consensus 2 ~~Dv~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~~--~dn~-----~L 65 (152)
T 3dob_A 2 NADVAPLSLGIETA-----GG---VMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEG-ERAMT--RDNH-----RL 65 (152)
T ss_dssp --CBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBG--GGSE-----EE
T ss_pred ceeeecceEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEc-Ccccc--ccCc-----ee
Confidence 67999999999997 33 37899999999999999999987554 89999999 77642 3444 45
Q ss_pred eeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCcc
Q psy7891 507 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 586 (929)
Q Consensus 507 ~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 586 (929)
+.|.|.||++++++. ++|+|+|++|.||+|+|++.+ .+++
T Consensus 66 G~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~Vsa~d---------~~tg------------------------ 105 (152)
T 3dob_A 66 GTFELSGIPPAPRGV-------PQIEVTFNIDANGILNVSAED---------KSTG------------------------ 105 (152)
T ss_dssp EEEEEECCCCCCTTC-------CCEEEEEEECTTCCEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------ceEEEEEEeCCCCeEEEEEEE---------cCCC------------------------
Confidence 667899999887665 689999999999999999874 1110
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHhh
Q psy7891 587 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 666 (929)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~~ 666 (929)
++.. +.+ ..+...||+++++++++.+++|
T Consensus 106 --------------------------------------------~~~~----i~I---~~~~~~Ls~~ei~~~~~~a~~~ 134 (152)
T 3dob_A 106 --------------------------------------------KSNR----ITI---QNEKGRLTQSDIDRMVHEAKQF 134 (152)
T ss_dssp --------------------------------------------CEEE----EEE---CCC----CHHHHHHHHHHHHHT
T ss_pred --------------------------------------------CEEE----EEE---EcCCCCCCHHHHHHHHHHHHHH
Confidence 0001 111 1233469999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy7891 667 NQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 667 ~~~D~~~~~~~eakN~LE 684 (929)
..+|++.+++.++||+||
T Consensus 135 ~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 135 EKEDGEQRERVQARNQLE 152 (152)
T ss_dssp HHHHHHHHHTCCCCSEEC
T ss_pred HHhhHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-18 Score=165.51 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=116.4
Q ss_pred EEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceee
Q psy7891 430 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 506 (929)
Q Consensus 430 v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i 506 (929)
+.|++||++||+|. |+ .+.+||++|++||++++.+|++..++ +.|.||+| ++... .+|. .|
T Consensus 2 ~~DV~p~slGie~~-----gg---~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqG-e~~~~--~dn~-----~L 65 (151)
T 3dqg_A 2 NADVTPLSLGIETL-----GG---IMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQG-EREMA--TSNK-----LL 65 (151)
T ss_dssp --CBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBG--GGSE-----EE
T ss_pred cceeeeeEEEEEEc-----CC---EEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEc-CCccc--ccCc-----EE
Confidence 57999999999997 33 37899999999999999999987554 99999999 77532 2444 45
Q ss_pred eeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCcc
Q psy7891 507 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 586 (929)
Q Consensus 507 ~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 586 (929)
+.|.|.|+++++++. ++|+|+|++|.||+|+|++.+ .+++
T Consensus 66 G~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~Vsa~d---------~~tg------------------------ 105 (151)
T 3dqg_A 66 GQFSLVGIPPAPRGV-------PQVEVTFDIDANGIVNVSARD---------RGTG------------------------ 105 (151)
T ss_dssp EEEEEECCCCCCTTC-------SCEEEEEEECTTSEEEEEEEE---------TTTC------------------------
T ss_pred EEEEEeCCCCCCCCC-------cEEEEEEEeccCcEEEEEEEE---------ccCC------------------------
Confidence 667899999887665 689999999999999999874 1110
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHhh
Q psy7891 587 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 666 (929)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~~ 666 (929)
++. .+.++ .+ ..||+++++++++.+++|
T Consensus 106 --------------------------------------------~~~----~i~I~---~~-~~Ls~~ei~~~~~~a~~~ 133 (151)
T 3dqg_A 106 --------------------------------------------KEQ----QIVIQ---SS-GGLSKDQIENMIKEAEKN 133 (151)
T ss_dssp --------------------------------------------CEE----EEEEE---CS-SSSCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CEe----EEEEe---cC-CCCCHHHHHHHHHHHHHH
Confidence 000 12222 23 679999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy7891 667 NQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 667 ~~~D~~~~~~~eakN~LE 684 (929)
..+|++.+++.++||+||
T Consensus 134 ~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 134 AAEDAKRKELVEVINQAE 151 (151)
T ss_dssp HHHHTTCCCEEECBCCCC
T ss_pred HHHhHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-19 Score=199.68 Aligned_cols=212 Identities=14% Similarity=0.129 Sum_probs=88.7
Q ss_pred ceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEe
Q psy7891 162 NEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQV 240 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~ 240 (929)
..++||+|++++..+|+++.+++ +.+|++.+.++++|+|||++++. ...+|+|+|+|+|+++.+.
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-----------~~~lVVDiG~g~T~v~pv~--- 170 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-----------LTGVVVDSGDGVTHICPVY--- 170 (394)
T ss_dssp ------------------------------------------------------------CCEEEECSSCEEEECEE---
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-----------ceEEEEEcCCCceEeeeeE---
Confidence 35999999999999999999865 78899999999999999988873 3459999999999998775
Q ss_pred eccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCC--
Q psy7891 241 VKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANN-- 318 (929)
Q Consensus 241 ~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~-- 318 (929)
.| .+ +........+||+++|..|.++|..+-. .. ...... ..++.+|+.+..-.
T Consensus 171 -----~G------~~-~~~~~~~~~~GG~~lt~~l~~~l~~~~~---~~--~~~~~~-------~~ae~iK~~~~~v~~d 226 (394)
T 1k8k_B 171 -----EG------FS-LPHLTRRLDIAGRDITRYLIKLLLLRGY---AF--NHSADF-------ETVRMIKEKLCYVGYN 226 (394)
T ss_dssp -----TT------EE-CSTTCEEESCCHHHHHHHHHHHHHHTTC---CC--CTTTTH-------HHHHHHHHHHCCCCSS
T ss_pred -----CC------EE-cccceEEeeccHHHHHHHHHHHHHhcCC---CC--CcHHHH-------HHHHHHHHhheeEecC
Confidence 24 11 1111123479999999999999976421 11 101122 23444444443211
Q ss_pred --------------ceeEEEeecccCcceEEEEeHHHHHHHHHHHH---------hHHHHHHHHHHHHcCCC--CCCccE
Q psy7891 319 --------------EHFAQIEGLIDEIDFKLLVTRAEFEALNEDLF---------DRVGYPVEQALKSSAVP--MDVISQ 373 (929)
Q Consensus 319 --------------~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~---------~~i~~~i~~~L~~a~~~--~~~I~~ 373 (929)
...+.+ -++ ..++|+++.|. +.+.+| ..+.+.|.++|..+... .+-++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~l---pdg--~~i~i~~erf~-~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~n 300 (394)
T 1k8k_B 227 IEQEQKLALETTVLVESYTL---PDG--RIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKH 300 (394)
T ss_dssp HHHHHHHHHHCSTTCEEEEC---TTS--CEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTT
T ss_pred HHHHHHhhccCCcCceEEEC---CCC--CEEEECchhhc-ChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhC
Confidence 111222 122 35678888874 333332 35788888888887432 334577
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCC-----------------cc--CCCCCchHHHHhhHHHHHH
Q psy7891 374 VILVGAGTRVPKVQEKITKVVGV-----------------EL--SKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 374 ViLvGG~sriP~v~~~l~~~f~~-----------------~i--~~~~n~deaVA~GAa~~aa 417 (929)
|+|+||+|++|.+.++|.+.++. ++ ..+.++..++.+||+++|.
T Consensus 301 IvLtGG~s~~~G~~~rl~~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 301 IVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp CEEESGGGCSTTHHHHHHHHHHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred EEEeCcccccccHHHHHHHHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 99999999999999998887752 12 2244667899999998886
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=179.22 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=124.4
Q ss_pred HcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCC
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRT 265 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~ 265 (929)
+++...+..|+|++|+|+++.... +....|+|+|||+++++++.. .| .+++...+++..
T Consensus 68 ~a~~~~~~~Vne~~aha~a~~~~~--------~~~~~vl~lgG~~~~~~~~~~-------~g------~~~~~~~~~~~~ 126 (276)
T 4ehu_A 68 MNYSDADKQISELSCHARGVNFII--------PETRTIIDIGGQDAKVLKLDN-------NG------RLLNFLMNDKCA 126 (276)
T ss_dssp GGCCSCSEECCHHHHHHHHHHHHS--------TTCCEEEEECSSCEEEEEECT-------TS------CEEEEEEECSCS
T ss_pred HHhhCCCcccchHHHHHHHHHHhC--------CCCCeEEEEcCCCceEEEEEe-------cC------ceEEEEeCCCcC
Confidence 467778899999999998876543 233478999999999988741 24 688888889999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhh--hccCCCceeEE---EeecccCcceEEEEeHH
Q psy7891 266 LGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKN--VLSANNEHFAQ---IEGLIDEIDFKLLVTRA 340 (929)
Q Consensus 266 lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~--~LS~~~~~~v~---ie~l~~~~d~~~~itR~ 340 (929)
.||.+|+..++++|.-.|..... + +..++. .++........ +..+..+ .
T Consensus 127 ~g~G~f~d~~a~~l~~~~~~~~~--------------~---~~~a~~~~~i~~~~~~f~~s~~~~~~~~~---------~ 180 (276)
T 4ehu_A 127 AGTGRFLDVMAKIIEVDVSELGS--------------I---SMNSQNEVSISSTCTVFAESEVISHLSEN---------A 180 (276)
T ss_dssp TTSHHHHHHHHHHHTCCGGGHHH--------------H---HTTCSSCCCCCCCSHHHHHHHHHHHHHTT---------C
T ss_pred cchhhHHHHHHHHhccChhhhHH--------------H---HhcCCCCCCcCCccchhhhhHHHHhhhcc---------c
Confidence 99999999999998655543110 0 001110 01100000000 0000000 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 341 EFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 341 efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
..++++..+...+.+.+....... ..++.|+|+||.+++|.|++.|++.||.++..+.||++++|+|||++|....
T Consensus 181 ~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 181 KIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 124556666665555554444433 3567899999999999999999999999999999999999999999997544
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-17 Score=156.92 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=115.6
Q ss_pred EEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceee
Q psy7891 430 TKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQI 506 (929)
Q Consensus 430 v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i 506 (929)
+.|++||+|||++. +| .+.+||++|+++|++++.+|++..++ +.|.|||| +.... .+|. .|
T Consensus 2 v~Dv~p~slGi~~~----~g----~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qG-e~~~~--~~n~-----~l 65 (152)
T 2op6_A 2 NADVNPLTLGIETV----GG----VMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEG-ERPMV--MDNH-----KL 65 (152)
T ss_dssp -CCBCSSCEEEEET----TT----EEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEES-SCSBG--GGSE-----EE
T ss_pred ceEeecccEEEEEe----CC----EEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEe-CCccC--ccCC-----Ee
Confidence 57999999999997 22 37899999999999999999987553 99999999 76532 2343 45
Q ss_pred eeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCCCCCCcc
Q psy7891 507 SKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDENEKPIN 586 (929)
Q Consensus 507 ~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 586 (929)
+.|.|.|+++++++. ++|+|+|++|.||+|+|++.+. .+.
T Consensus 66 g~~~l~gipp~p~G~-------~~I~V~f~id~nGiL~V~a~d~---------~tg------------------------ 105 (152)
T 2op6_A 66 GNFDVTGIPPAPRGV-------PQIEVTFEIDVNGILHVSAEDK---------GTG------------------------ 105 (152)
T ss_dssp EEEEECCCCCCCTTC-------SCEEEEEEECTTSCEEEEEEET---------TTC------------------------
T ss_pred EEEEEECCCCCCCCC-------ceEEEEEEECCCcEEEEEEEEe---------cCC------------------------
Confidence 677899999876554 5899999999999999998741 100
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHHHHHHhh
Q psy7891 587 EAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSLSKLDSL 666 (929)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~~~l~~~ 666 (929)
++. .+.+. .....||+++++++++++.+|
T Consensus 106 --------------------------------------------~~~----~i~i~---~~~~~ls~eei~~~~~~~~~~ 134 (152)
T 2op6_A 106 --------------------------------------------NKN----KLTIT---NDHNRLSPEDIERMINDADKF 134 (152)
T ss_dssp --------------------------------------------CEE----EEEEC---SSSSCCCHHHHHHHHHHHHHT
T ss_pred --------------------------------------------cEE----EEEee---ccccCCCHHHHHHHHHHHHHh
Confidence 000 12221 223569999999999999999
Q ss_pred hHHHHHHHHHHHHHhhHH
Q psy7891 667 NQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 667 ~~~D~~~~~~~eakN~LE 684 (929)
..+|+..+++.++||+||
T Consensus 135 ~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 135 AADDQAQKEKVESRNELE 152 (152)
T ss_dssp HHHHHHHHHHSCCCSEEC
T ss_pred HhccHHHHHHHHHHhhcC
Confidence 999999999999999986
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=173.95 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=140.2
Q ss_pred ceEEEEecCCCCHHHH-HHHHHHHHHcCC------------cEEEEechhHHHHHHhcccccccC-CCCCCcEEEEEEcC
Q psy7891 162 NEAVIIVPGYFNQIER-QSMLKAGELAGL------------KVLQLMNDYTAVALNYGIFKRKDF-NETNPVHVMFYDMG 227 (929)
Q Consensus 162 ~~~VItVPa~f~~~qR-~al~~Aa~~AGl------------~~~~li~EptAAAl~y~~~~~~~~-~~~~~~~vlv~D~G 227 (929)
..+|+.+|..+...+| +++++++...+- ..+.++.||.||+++|+....... ... +..++|+|+|
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~-~~~~~vvDiG 192 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFT-EGKYSVLDFG 192 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHH-TCEEEEEEEC
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccc-cCcEEEEEeC
Confidence 3789999999998887 589999875543 457899999999999976431100 001 6899999999
Q ss_pred CceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHH
Q psy7891 228 AWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEA 307 (929)
Q Consensus 228 ggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~a 307 (929)
|||||++++. .| .-+....+...+||..++..|.+++.+++.. ..+. .. ..
T Consensus 193 ggTtd~~v~~--------~~-------~~~~~~s~s~~~G~~~~~~~i~~~l~~~~~g-----~~l~--~~-------~i 243 (355)
T 3js6_A 193 SGTTIIDTYQ--------NM-------KRVEEESFVINKGTIDFYKRIASHVSKKSEG-----ASIT--PR-------MI 243 (355)
T ss_dssp SSCEEEEEEE--------TT-------EECGGGCEEESCCHHHHHHHHHHHTC-------------C--HH-------HH
T ss_pred CCcEEEEEEc--------CC-------EEccccccCcchHHHHHHHHHHHHHHHhcCC-----CcCC--HH-------HH
Confidence 9999999984 13 1111112235799999999999999876421 1122 11 11
Q ss_pred HHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHH--
Q psy7891 308 GRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK-- 385 (929)
Q Consensus 308 ek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~-- 385 (929)
++.+. . .... . +..-.+.+ .+.+++.+++++++|...|++.+.+ ++.++.|+|+||++.++.
T Consensus 244 ~~g~~-~--------~~~~-~-~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~ 307 (355)
T 3js6_A 244 EKGLE-Y--------KQCK-L-NQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDS 307 (355)
T ss_dssp HSCCC------------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHH
T ss_pred hcCCc-c--------cccc-c-cccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhh
Confidence 11111 0 0000 0 00001122 3457778888888888888888763 467899999999999998
Q ss_pred HHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcC
Q psy7891 386 VQEKITKVVGVELSKNLNTDEAAALGAVYKAADLST 421 (929)
Q Consensus 386 v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~ 421 (929)
|++.|++.|+.. .||..|+|+|+..++..+..
T Consensus 308 l~~~i~~~~~~~----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 308 LSHYYSDVFEKA----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp HHHHSSSCEECC----SSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC----CCcHHHHHHHHHHHHHHHHh
Confidence 888998888532 89999999999999887653
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-14 Score=156.58 Aligned_cols=203 Identities=14% Similarity=0.114 Sum_probs=139.2
Q ss_pred ceEEEEecCCCCH--HHHHHHHHHHHHc--------C------CcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEE
Q psy7891 162 NEAVIIVPGYFNQ--IERQSMLKAGELA--------G------LKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYD 225 (929)
Q Consensus 162 ~~~VItVPa~f~~--~qR~al~~Aa~~A--------G------l~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D 225 (929)
..+|+++|..+.. .+|+.+++....- | +..+.++.|+.+|.+.+. . .+ . ...++|+|
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--~--~~--~-~~~v~vvD 178 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--E--NF--K-NKNVAVID 178 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--C--CC--T-TCEEEEEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--h--hh--c-cCCEEEEE
Confidence 3789999998764 3677777766521 2 134678899988876652 1 11 2 68999999
Q ss_pred cCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHH-HhhhhcccCCCccCCHHHHHHHH
Q psy7891 226 MGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGK-KFNEMKKTTKDVFENPRAVAKLF 304 (929)
Q Consensus 226 ~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~-~f~~~~~~~~d~~~~~~~~~kL~ 304 (929)
+||||||++++. .| .+ +....+...+||.++++.|++++.. ++.. .+..
T Consensus 179 iGggTtd~~v~~--------~g------~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~------~i~~--------- 228 (329)
T 4apw_A 179 FGGLNMGFSLYR--------NC------VV-NPSERFIEEHGVKDLIIRVGDALTDLNNGN------LITN--------- 228 (329)
T ss_dssp ECSSCEEEEEEE--------TT------EE-CGGGCEEESCCHHHHHHHHHTSSSSCSSCS------CTTS---------
T ss_pred eCCCcEEEEEEE--------CC------EE-eeccccchhhHHHHHHHHHHHHHHhhccCC------CCCH---------
Confidence 999999999987 13 22 2222234579999999999998876 4432 2211
Q ss_pred HHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCH
Q psy7891 305 KEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVP 384 (929)
Q Consensus 305 ~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP 384 (929)
..++++|+. .. .. .+.++ ..+..+++++.+++++++|...|++. +..++.++.|+|+||++.+
T Consensus 229 ~~~e~i~~~--g~--~~-------~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l- 291 (329)
T 4apw_A 229 EQAESALNN--GY--MK-------KGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK- 291 (329)
T ss_dssp BTTTTCSSS--CS--SC-------EECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH-
T ss_pred HHHHHHHhc--CC--cc-------cCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH-
Confidence 024444432 11 10 01111 13457778888888888887777765 3556668999999999998
Q ss_pred HHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 385 KVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 385 ~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+.+.|++.|+..+...-||..|+|+|+..++.+.
T Consensus 292 -~~~~l~~~~~~~v~v~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 292 -LKEQISKTYPNNSIITNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp -HHHHHHHHSTTCEECCSSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCEecCCChhhHHHHHHHHHhhh
Confidence 6699999999667778899999999998887643
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=148.38 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHHHhhcccc--cceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCC
Q psy7891 140 ELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNET 216 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~--v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~ 216 (929)
+.+..+++|+.. ..++.. -..++||.|+..+...|+.+.+.+ +..|+.-+.++.++.+|+++.+..... ...
T Consensus 103 d~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~--~~~ 177 (427)
T 3dwl_A 103 DHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKV--TDR 177 (427)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTT--CSC
T ss_pred HHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccc--cCC
Confidence 344556665542 223322 247999999999999999999988 789999999999999999888743211 111
Q ss_pred CCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCC
Q psy7891 217 NPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFEN 296 (929)
Q Consensus 217 ~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~ 296 (929)
..+-||+|+|+|+|+++.|. .|. -+....-...+||+++|..|.++|..+... ...
T Consensus 178 -~~tglVVDiG~g~T~v~PV~--------~G~-------~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~--------~~~ 233 (427)
T 3dwl_A 178 -SLTGTVVDSGDGVTHIIPVA--------EGY-------VIGSSIKTMPLAGRDVTYFVQSLLRDRNEP--------DSS 233 (427)
T ss_dssp -CCCEEEEEESSSCEEEEEEE--------TTE-------ECGGGCEEESCCHHHHHHHHHHTTC----------------
T ss_pred -CceEEEEECCCCceEEEEEE--------CCE-------EehhhheeccccHHHHHHHHHHHHHHcCCC--------chh
Confidence 35679999999999999984 241 111111123699999999999888654322 000
Q ss_pred HHHHHHHHHHHHHhhhhccCCCce-----------eEEEee--c--ccCcceEEEEeHHHHH---HHHHHH------HhH
Q psy7891 297 PRAVAKLFKEAGRLKNVLSANNEH-----------FAQIEG--L--IDEIDFKLLVTRAEFE---ALNEDL------FDR 352 (929)
Q Consensus 297 ~~~~~kL~~~aek~K~~LS~~~~~-----------~v~ie~--l--~~~~d~~~~itR~efe---~l~~~l------~~~ 352 (929)
...++.+|+.+..-... ...+.. + .++....++|..+.|. .+++|- ...
T Consensus 234 -------~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~g 306 (427)
T 3dwl_A 234 -------LKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTP 306 (427)
T ss_dssp -------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSC
T ss_pred -------HHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCC
Confidence 12344444444321100 000110 1 1233345677777763 334431 235
Q ss_pred HHHHHHHHHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhC----------------------CccCCCCCchHHH
Q psy7891 353 VGYPVEQALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVG----------------------VELSKNLNTDEAA 408 (929)
Q Consensus 353 i~~~i~~~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~----------------------~~i~~~~n~deaV 408 (929)
|.++|.++|.++..+ .+-...|+|+||+|.+|.+.++|.+.+. .++..+.+...++
T Consensus 307 I~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~ 386 (427)
T 3dwl_A 307 LPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAV 386 (427)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHH
T ss_pred ccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccce
Confidence 788888888876431 1123569999999999999888877652 1222334667899
Q ss_pred HhhHHHHHH
Q psy7891 409 ALGAVYKAA 417 (929)
Q Consensus 409 A~GAa~~aa 417 (929)
=+|++++|.
T Consensus 387 WiGGSilas 395 (427)
T 3dwl_A 387 WFGGSLLAQ 395 (427)
T ss_dssp HHHHHHHHH
T ss_pred ecCceeecc
Confidence 999999986
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-11 Score=138.41 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=119.9
Q ss_pred CeEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEec----CceeecHHHHHhhhhCCCChHhhhHHhcCCCC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK----GERTFGEDAQIIGTRFPSNSYGYFLDLLGKSI 100 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~----~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~ 100 (929)
...|+||+||.++++++...+.|.- .+||+|+... ...+||.++.... +.
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~---------v~PSvVg~~~~~~~~~~~vG~e~~~~~---r~-------------- 76 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQS---------ILPSVYGKYTADEGNKKIFSEQSIGIP---RK-------------- 76 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSE---------EEESEEEEESSCSSCCEECCTTGGGSC---CT--------------
T ss_pred CCeEEEECCCcEEEEEECCCCCeee---------ecCceeEEeccCCCccEEEecHHHhcC---cC--------------
Confidence 4578999999999999886664432 3699999842 2467777533210 00
Q ss_pred CCHHHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhccc--ccc-eEEEEecCCCCHHHH
Q psy7891 101 DSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQ--VIN-EAVIIVPGYFNQIER 177 (929)
Q Consensus 101 ~d~~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~--~v~-~~VItVPa~f~~~qR 177 (929)
.-.+...+..|. +.--+.+..+++|+... .++. .-. .++||.|+......|
T Consensus 77 ----------------------~l~l~~Pi~~Gv-I~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~R 130 (498)
T 3qb0_A 77 ----------------------DYELKPIIENGL-VIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENR 130 (498)
T ss_dssp ----------------------TEEEEESEETTE-ESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHH
T ss_pred ----------------------ceEEeccCcCCE-EccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHH
Confidence 001122222232 22234455666666532 2331 123 589999999999999
Q ss_pred HHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEE
Q psy7891 178 QSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVS 256 (929)
Q Consensus 178 ~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~ 256 (929)
+.+.+.+ +..|+.-+.++.++.||++++|.. +-||+|+|+|+|+++.|. .| +-
T Consensus 131 e~~~eilFE~f~vpav~l~~~~vlalya~G~~-----------tglVVDiG~g~T~vvPI~--------~G-------~~ 184 (498)
T 3qb0_A 131 KKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP-----------NCLVVDIGHDTCSVSPIV--------DG-------MT 184 (498)
T ss_dssp HHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS-----------SEEEEEECSSCEEEEEEE--------TT-------EE
T ss_pred HHHHHHHHhhcCCCeEeecchHHHHHHHcCCC-----------eEEEEEcCCCcEEEEEEe--------CC-------EE
Confidence 9999975 789999999999999999888741 239999999999999885 24 11
Q ss_pred EEEEecCCCcchHHHHHHHHHHHHH
Q psy7891 257 VLGVGYDRTLGGLEMQIRLRDFLGK 281 (929)
Q Consensus 257 v~~~~~d~~lGG~~~D~~l~~~l~~ 281 (929)
+....-...+||+++|..|.++|..
T Consensus 185 l~~ai~rl~vgG~~lt~~L~~lL~~ 209 (498)
T 3qb0_A 185 LSKSTRRNFIAGKFINHLIKKALEP 209 (498)
T ss_dssp CGGGCEEESCSHHHHHHHHHHHTTT
T ss_pred ccccceeccccHHHHHHHHHHHHHh
Confidence 1111112369999999999999875
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-12 Score=122.28 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=78.2
Q ss_pred cceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccC---ceEEEEEeccCcCcCChhhhccc
Q psy7891 425 VKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVG---DFNFNVSYASEIEHLNPEQIAML 501 (929)
Q Consensus 425 ~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~---~~~i~i~~g~~~~~~~~~~~~~~ 501 (929)
++++.+.|++||+|||++. +| .+.+||++|+++|++++.+|++..+ .+.|.|||| +..... +|.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~----~g----~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqG-e~~~~~--~n~-- 80 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETM----GG----VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQG-ERKRAA--DNK-- 80 (135)
T ss_dssp -------CCCSSCCCEEET----TT----EECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEEC-CSSSCS--SSE--
T ss_pred eCcEEEEEeecCcEEEEEE----CC----EEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEe-CCcccc--cCc--
Confidence 5788999999999999997 22 3778999999999999999998754 399999999 765332 444
Q ss_pred cceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEee
Q psy7891 502 GTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 549 (929)
Q Consensus 502 g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e 549 (929)
.|+++.+.|+++++++. ++|+|+|++|.||+|+|++.+
T Consensus 81 ---~Lg~f~l~gipp~p~G~-------~~IeVtf~iD~nGiL~V~a~d 118 (135)
T 1q5l_A 81 ---SLGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD 118 (135)
T ss_dssp ---EEEEEECCCCCSCCSSS-------CCEEEEEEECTTSEEEEEEEE
T ss_pred ---EEEEEEEeCCCCCCCce-------eEEEEEEEECCCCEEEEEEEE
Confidence 45667899999876554 589999999999999999875
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=113.36 Aligned_cols=83 Identities=30% Similarity=0.416 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHH
Q psy7891 672 AKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER 751 (929)
Q Consensus 672 ~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R 751 (929)
.++++.++||.||+|||++|..|.++.+..++++++++.|...|+++++||++ +.+++.++|+.++++|+.++.||..|
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~-~~~a~~e~i~~k~~eL~~~~~~i~~k 81 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDA-NTLAEKDEFEHKRKELEQVCNPIISG 81 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999766699999999999999999999999996 57789999999999999999999999
Q ss_pred HHhh
Q psy7891 752 HREH 755 (929)
Q Consensus 752 ~~e~ 755 (929)
++..
T Consensus 82 ~y~~ 85 (113)
T 3lof_A 82 LYQG 85 (113)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 9864
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-09 Score=127.99 Aligned_cols=94 Identities=13% Similarity=0.268 Sum_probs=74.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEee
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVV 241 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~ 241 (929)
.++||.|..++...|+.|.+.+ +..|+..+.++.++.+|++++|. .+-+|||+|++.|.|+-|.
T Consensus 200 pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~-----------~tglVVDiG~~~T~v~PV~---- 264 (593)
T 4fo0_A 200 RCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGL-----------SSTCIVDVGDQKTSVCCVE---- 264 (593)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTC-----------SEEEEEEECSSCEEEEEEE----
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCC-----------CceEEEEeCCCceeeeeeE----
Confidence 4999999999999999887766 66799999999999999988763 4568999999999998775
Q ss_pred ccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 242 KTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 242 ~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
.|..-.+.. -...+||++++..|.++|..+
T Consensus 265 ----dG~~l~~~~-------~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 265 ----DGVSHRNTR-------LCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp ----SSCBCGGGC-------EEESCCHHHHHHHHHHHHHHT
T ss_pred ----CCEEehhhe-------EEecccHHHHHHHHHHHHHhc
Confidence 252111111 113699999999999988764
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.4e-10 Score=105.45 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHH
Q psy7891 672 AKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWER 751 (929)
Q Consensus 672 ~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R 751 (929)
.++++.++||.||+|||++|..|.++.+...+++++|+.|...|+++.+||++ +.++++++|+.++++|+.++.||..|
T Consensus 12 ~~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~-~~~ad~e~ik~k~~eL~~~~~~i~~k 90 (120)
T 2p32_A 12 SGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDS-NQTAEKEEFEHQQKDLEGLANPIISK 90 (120)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999654588899999999999999999999984 46688999999999999999999998
Q ss_pred HHh
Q psy7891 752 HRE 754 (929)
Q Consensus 752 ~~e 754 (929)
++.
T Consensus 91 ~y~ 93 (120)
T 2p32_A 91 LYQ 93 (120)
T ss_dssp HCC
T ss_pred HHH
Confidence 874
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-08 Score=115.31 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHc-CC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCccc
Q psy7891 174 QIERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVE 250 (929)
Q Consensus 174 ~~qR~al~~Aa~~A-Gl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~ 250 (929)
..+-+.+.+|.+.+ || ++-. -||.||+++....... +..++++||||||||++|+. .|
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~------eLGvaiIDmGGGTTd~sVf~--------~G--- 427 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGT------TRPLAILDLGAGSTDASIIN--------PK--- 427 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTC------CSSEEEEEECSSEEEEEEEC--------TT---
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCC------cCCeEEEEeCCCcceEEEEc--------CC---
Confidence 34567888999999 99 7766 8999999887654322 67899999999999999986 23
Q ss_pred CCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC-C---------Cce
Q psy7891 251 THPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA-N---------NEH 320 (929)
Q Consensus 251 ~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~-~---------~~~ 320 (929)
.+... .....||.+++..|+.-|.-. | +..||++|. ... . ...
T Consensus 428 ---~lv~a---~~ip~gG~~VT~DIA~~Lgt~---------d-----------~~~AErIK~-YG~A~ve~lf~~~dede 480 (610)
T 2d0o_A 428 ---GDIIA---THLAGAGDMVTMIIARELGLE---------D-----------RYLAEEIKK-YPLAKVESLFHLRHEDG 480 (610)
T ss_dssp ---CCEEE---EEEECSHHHHHHHHHHHHTCC---------C-----------HHHHHHHHH-SCEEEECSSSEEEETTS
T ss_pred ---cEEEE---EEeccchHHHHHHHHHHhCCC---------C-----------HHHHHHhcc-cCceeecccccccCCCC
Confidence 11111 123589999999888766321 0 235888887 321 1 112
Q ss_pred eEEE--eecc----cC-----cceEEEEeHHH--HHHHHHHHHhHHHHH--HHHHHHHcCC-----CCCCccEEEEEcCC
Q psy7891 321 FAQI--EGLI----DE-----IDFKLLVTRAE--FEALNEDLFDRVGYP--VEQALKSSAV-----PMDVISQVILVGAG 380 (929)
Q Consensus 321 ~v~i--e~l~----~~-----~d~~~~itR~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~I~~ViLvGG~ 380 (929)
.+.+ +.+. .. .+--..| |.. +|+ ++-+-+++.+. +.++|+..+. ...+|..|+|+||+
T Consensus 481 ~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGs 558 (610)
T 2d0o_A 481 SVQFFSTPLPPAVFARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGS 558 (610)
T ss_dssp CEEECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGG
T ss_pred eEEEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCch
Confidence 3444 2221 11 0112355 555 666 55555554443 3334555322 35678999999999
Q ss_pred cCCHHHHHHHHHHhCC-cc--C-----CCCCchHHHHhhHHHHHHh
Q psy7891 381 TRVPKVQEKITKVVGV-EL--S-----KNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 381 sriP~v~~~l~~~f~~-~i--~-----~~~n~deaVA~GAa~~aa~ 418 (929)
|.++.+.++..+.|+. .+ . ..-+|..|+|.|.+++.+.
T Consensus 559 Sql~GI~ElA~~iL~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 559 SLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHK 604 (610)
T ss_dssp GGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHhCcCCeEEecCCccccCCCcHHHHHHHHHHHhh
Confidence 9999999999999985 32 1 2357999999999987653
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=9.8e-10 Score=123.93 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHc-CC--cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCC
Q psy7891 176 ERQSMLKAGELA-GL--KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETH 252 (929)
Q Consensus 176 qR~al~~Aa~~A-Gl--~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~ 252 (929)
+-+.+.+|.+.+ || ++-. -||.||+++....... +..++++||||||||++++. .|
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~------elGvaiIDmGgGTTd~sVf~--------~g----- 429 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGC------AAPLAILDLGAGSTDAAIVN--------AE----- 429 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTC------CSSEEEEEECSSEEEEEEEC--------SS-----
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCC------cCCeEEEEeCCCcceEEEEc--------CC-----
Confidence 345688888888 99 6655 8899999877654322 67899999999999999986 23
Q ss_pred CcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccC-C---------CceeE
Q psy7891 253 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSA-N---------NEHFA 322 (929)
Q Consensus 253 ~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~-~---------~~~~v 322 (929)
.+... .....||.+++..|+.-|.-. | +..||+.|. ... . ....+
T Consensus 430 -~lv~a---~~ip~gG~~VT~DIA~~Lg~~---------d-----------~~~AErIK~-YG~A~~e~lf~~~dede~I 484 (607)
T 1nbw_A 430 -GQITA---VHLAGAGNMVSLLIKTELGLE---------D-----------LSLAEAIKK-YPLAKVESLFSIRHENGAV 484 (607)
T ss_dssp -SCEEE---EEEECCHHHHHHHHHHHHTCS---------C-----------HHHHHHHHH-SCEEEECSSSEEEETTSCE
T ss_pred -cEEEE---EEeccchHHHHHHHHHHhCCC---------C-----------HHHHHHhcc-cCceeecccccccCCCCeE
Confidence 11111 123589999999888766321 0 235888887 321 1 11234
Q ss_pred EE--eecc----cC-----cceEEEEeHHH--HHHHHHHHHhHHHHH--HHHHHHHcCC-----CCCCccEEEEEcCCcC
Q psy7891 323 QI--EGLI----DE-----IDFKLLVTRAE--FEALNEDLFDRVGYP--VEQALKSSAV-----PMDVISQVILVGAGTR 382 (929)
Q Consensus 323 ~i--e~l~----~~-----~d~~~~itR~e--fe~l~~~l~~~i~~~--i~~~L~~a~~-----~~~~I~~ViLvGG~sr 382 (929)
.+ +.+. .. .+--..| |.. +|+ ++-+-+++.+. +.++|+.++. ...+|..|+|+||+|.
T Consensus 485 ev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSq 562 (607)
T 1nbw_A 485 EFFREALSPAVFAKVVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSL 562 (607)
T ss_dssp EECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGG
T ss_pred EEecCCCCcceeeeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhh
Confidence 44 2221 11 0112355 555 666 55555554443 4555777654 3457799999999999
Q ss_pred CHHHHHHHHHHhCC-cc-------CCCCCchHHHHhhHHHHHH
Q psy7891 383 VPKVQEKITKVVGV-EL-------SKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 383 iP~v~~~l~~~f~~-~i-------~~~~n~deaVA~GAa~~aa 417 (929)
++.+.++..+.|+. .+ ...-+|..|+|.|.+++.+
T Consensus 563 l~gI~elA~~iL~~~~VRiGrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 563 DFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp SSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHhCcCCeEEecCCccccCCchHHHHHHHHHhhh
Confidence 99999999999975 32 1245799999999997654
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-10 Score=101.87 Aligned_cols=79 Identities=25% Similarity=0.435 Sum_probs=69.7
Q ss_pred HHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHhh
Q psy7891 676 KEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREH 755 (929)
Q Consensus 676 ~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~ 755 (929)
+.++||.||+|||++|..|.++++...+++++|+.|...|.++.+||++ +.+++.++|+.++++|+.++.||..|+++.
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~-~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~ 80 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDK-NQTAEKEEFEHQQKELEKVCNPIITKLYQS 80 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHc-CCccCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999655788999999999999999999999973 445678999999999999999999998753
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=91.25 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=43.6
Q ss_pred cEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 372 SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 372 ~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+.|+++||.++.|.+++.+.+.++.++..+.+++.+.|+|||+.|+..
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred CeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 679999999999999999999999888787788889999999999754
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=100.20 Aligned_cols=202 Identities=10% Similarity=0.059 Sum_probs=111.2
Q ss_pred HHHHHcCC----cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEE
Q psy7891 182 KAGELAGL----KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 257 (929)
Q Consensus 182 ~Aa~~AGl----~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v 257 (929)
++|+..|| .|+.-..+..||+++.+.... ..+++=+|.+++-..+..- .. ....|. .+-.
T Consensus 220 ~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~---------g~~~~s~GTs~~~~~~~~~-~~-~~~~~~-----~~~~ 283 (504)
T 3ll3_A 220 EYVKKLGIDSDTKIILGASDGYLSTIGVNAIDS---------DHCALNVGTSGAIRTIVDQ-PK-IDPSAS-----YFCY 283 (504)
T ss_dssp HHHHHHTCCTTCEEEEEEEHHHHHHHTTTCCST---------TEEEEEESSSEEEEEEESS-CC-CCTTCC-----SEEE
T ss_pred HHHHhcCCCcCCCEEEEccHHHHHHHhCCCCCC---------CcEEEEechhhhheeeCCC-cc-cCCCCc-----eEEE
Confidence 45555554 588888999999988875431 2345556776654433220 00 001110 1100
Q ss_pred -E-----EEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC-
Q psy7891 258 -L-----GVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE- 330 (929)
Q Consensus 258 -~-----~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~- 330 (929)
. ...+....||..+ +|+.+.|... .. . ...+...++++ .......+.++.+...
T Consensus 284 ~~~~~~~~~~g~~~~~G~~~-----~W~~~~~~~~------~~-~---~~~~~~~a~~~----~~g~~gl~~~P~~~Ger 344 (504)
T 3ll3_A 284 PADKTHYLLGGPVNNGGIVF-----NWARQTLFDA------DE-T---PQDFLDVAQTA----PAGSRNLIFLPYLGGER 344 (504)
T ss_dssp EEETTEEEEEEEESCSHHHH-----HHHHHHHTCT------TC-C---HHHHHHHHHTS----CTTGGGCEEECCTTCBC
T ss_pred EeCCCeEEEEeehhhHHHHH-----HHHHHHhccc------hh-H---HHHHHHHHhcC----CCCCCCeEEecCccCCC
Confidence 0 0112234677644 5777766431 00 1 12222222222 1223345666655422
Q ss_pred -----cceE-------EEEeHHHHHHHHHH-HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCc
Q psy7891 331 -----IDFK-------LLVTRAEFEALNED-LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVE 397 (929)
Q Consensus 331 -----~d~~-------~~itR~efe~l~~~-l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~ 397 (929)
.+.+ ..-+|.+|-+.+-+ +.-.+...+ +.|+..+. .++.|.++||++|.+.+.+++.+.||.+
T Consensus 345 ~P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r~~~-~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~p 420 (504)
T 3ll3_A 345 APIWDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAA-SNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNVP 420 (504)
T ss_dssp TTTCBTTCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH-HHHHTTSC---CCSEEEEESGGGCSHHHHHHHHHHHTSC
T ss_pred CCCCCCccCeEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CCCEEEEeCchhcCHHHHHHHHHhhCCe
Confidence 1222 12357766544333 333333333 34554443 5789999999999999999999999987
Q ss_pred cCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 398 LSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 398 i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
+... ...|+.|+|||+.|+.-.+.+
T Consensus 421 V~~~-~~~e~~alGaA~lA~~a~G~~ 445 (504)
T 3ll3_A 421 IVTM-KEQQSGTLAAMFLARQALGLN 445 (504)
T ss_dssp EEEE-SCSCHHHHHHHHHHHHHTTSC
T ss_pred EEec-CCCCchhHHHHHHHHHHcCcc
Confidence 7553 356799999999999766654
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-06 Score=97.05 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=59.8
Q ss_pred EeHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 337 VTRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 337 itR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
-+|.++-+.+- .+.-.+...++..-+.+|. .++.|.++||+++.+.+.+++.++||.++.+.- ..|+.|+|||+.
T Consensus 371 ~~~~~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~-~~E~~alGAA~l 446 (526)
T 3ezw_A 371 VNANHIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERPE-VREVTALGAAYL 446 (526)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeCC-CCchHHHHHHHH
Confidence 35666654333 3333344444433334565 567899999999999999999999998775543 457899999999
Q ss_pred HHhhcCCcc
Q psy7891 416 AADLSTGFK 424 (929)
Q Consensus 416 aa~~s~~f~ 424 (929)
|+.-.+.|+
T Consensus 447 A~~a~G~~~ 455 (526)
T 3ezw_A 447 AGLAVGFWQ 455 (526)
T ss_dssp HHHHTTSSS
T ss_pred HHHHhCCCC
Confidence 998776543
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=69.76 Aligned_cols=75 Identities=13% Similarity=0.083 Sum_probs=53.8
Q ss_pred EeHHHHHH-HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcC-CcCCHHHHHHHHHHh---CCccCCCCCchHHHHhh
Q psy7891 337 VTRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGA-GTRVPKVQEKITKVV---GVELSKNLNTDEAAALG 411 (929)
Q Consensus 337 itR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG-~sriP~v~~~l~~~f---~~~i~~~~n~deaVA~G 411 (929)
++++++-. ++.-+.+++..+...+.+..+ +..|+++|| .+..|.+++.|.+++ +.++..+.++..+.|+|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 45666543 344444455444444444443 446999999 899999999999985 46788888999999999
Q ss_pred HHHHH
Q psy7891 412 AVYKA 416 (929)
Q Consensus 412 Aa~~a 416 (929)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99864
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00017 Score=83.98 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhhcccc-----cceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhcccccccC
Q psy7891 140 ELVAMLLHKAREYASVSAGQV-----INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIFKRKDF 213 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~-----v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~~~~~~ 213 (929)
+.+..++.|+... ..++.. -..++||+|+.++...|+.|.+.+ +..|+.-+.++.++.||++++|.
T Consensus 197 D~mE~Iw~y~f~~--~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------ 268 (655)
T 4am6_A 197 SDVTKLLEHALNS--ETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------ 268 (655)
T ss_dssp HHHHHHHHHHHBS--SSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------
T ss_pred HHHHHHHHHHhcc--ccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------
Confidence 4445566665421 133322 246999999999999999999988 56899999999999999988774
Q ss_pred CCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHH
Q psy7891 214 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKK 282 (929)
Q Consensus 214 ~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~ 282 (929)
...-||+|+|+|+|+++.|. .|. -+........+||+++|..|.++|..+
T Consensus 269 ----~ttGLVVDiG~g~T~VvPV~--------eG~-------vl~~ai~rL~iGG~dLT~yL~kLL~~r 318 (655)
T 4am6_A 269 ----STSTCVVNIGAAETRIACVD--------EGT-------VLEHSAITLDYGGDDITRLFALFLLQS 318 (655)
T ss_dssp ----SSCEEEEEECSSCEEEEEEE--------TTE-------ECGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred ----CCceEEEcCCCceEEEEEEe--------CCE-------EEhhheeeecchHHHHHHHHHHHHHHc
Confidence 13569999999999999885 241 111111124699999999999998765
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0029 Score=73.80 Aligned_cols=209 Identities=15% Similarity=0.078 Sum_probs=111.7
Q ss_pred HHHHHcCC----cEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcc---c--CC
Q psy7891 182 KAGELAGL----KVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFV---E--TH 252 (929)
Q Consensus 182 ~Aa~~AGl----~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~---~--~~ 252 (929)
++|+..|| .|+.-..+..||+++.+.... + .+++-+|.+++-..+...........|.. . -.
T Consensus 224 ~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~-------g--~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (511)
T 3hz6_A 224 LAARQTGFVSGTPVLCGLGDAGAATLGVGVLDD-------E--DAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIA 294 (511)
T ss_dssp HHHHHHCCCTTCEEECCEEHHHHHHHHTTCCST-------T--CEEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSST
T ss_pred HHHHhhCCCCCCeEEEECchHHHHHHhCCCCCC-------C--cEEEEecchhhheeecCCeecccCCCCceEEEEEecC
Confidence 45555554 577778888899988876432 1 23445676665544433011110011210 0 01
Q ss_pred CcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHHHHHHHHHHhhhhccCCCceeEEEeecccC--
Q psy7891 253 PQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE-- 330 (929)
Q Consensus 253 ~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~-- 330 (929)
+.+-+. +....||. ..+|+.+.|.. .. . . .+..|.+.++++..-. ......+.++.+.+.
T Consensus 295 ~~~~~~---g~~~~~G~-----~~~W~~~~~~~--~~--~--~---~~~~l~~~a~~~~~g~-~~~~gl~~~P~~~Ger~ 356 (511)
T 3hz6_A 295 GKTLQV---APVLNAGN-----ILQWALTLVGH--RP--G--E---DCAEYFHMAAAEVQGV-TVPDGLLFVPYLHAERC 356 (511)
T ss_dssp TEEEEE---EEESSSHH-----HHHHHGGGGTC--CT--T--S---CSHHHHHHHHHHHTTC-CCCTTCEEEEESSCBCS
T ss_pred CceEEE---eehhhHHH-----HHHHHHHHhcc--cc--c--c---cHHHHHHHHHhCCCCC-CCCCCEEEeCCCCCCCC
Confidence 111111 12345664 45677776641 00 0 0 1233444444433210 002234566655322
Q ss_pred ----cceEE-------EEeHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCcc
Q psy7891 331 ----IDFKL-------LVTRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVEL 398 (929)
Q Consensus 331 ----~d~~~-------~itR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i 398 (929)
.+.+- .-+|.+|-+.+- .+.-.+...+ +.|+. + . ++.|.++||++|.+.+.+++.+.||.++
T Consensus 357 P~~d~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~-~~l~~-g---~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV 430 (511)
T 3hz6_A 357 PVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCA-ELLGM-E---K-VGLLKVVGGGARSEAWLRMIADNLNVSL 430 (511)
T ss_dssp SSCBSSCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH-HHHTG-G---G-CCEEEEESGGGGCHHHHHHHHHHHTCEE
T ss_pred CCCCCccceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHhc-C---C-CCEEEEeCchhcCHHHHHHHHHHHCCee
Confidence 22222 235766644332 2333333333 33443 3 2 7899999999999999999999999887
Q ss_pred CCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 399 SKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 399 ~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.....+.|+.|+|||+.|+.-.+.+
T Consensus 431 ~~~~~~~e~~alGaA~lA~~a~G~~ 455 (511)
T 3hz6_A 431 LVKPDAHLHPLRGLAALAAVELEWS 455 (511)
T ss_dssp EECCCGGGHHHHHHHHHHHHHTTSC
T ss_pred EEecCCCCchHHHHHHHHHHHhCCc
Confidence 2334588999999999999777654
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0099 Score=69.12 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=58.8
Q ss_pred EeHHHHHHHH-HHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHH
Q psy7891 337 VTRAEFEALN-EDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVY 414 (929)
Q Consensus 337 itR~efe~l~-~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~ 414 (929)
-+|.+|-+.+ +.+.-.+...++ .|+. .+. .++.|.++||++|.+.+.+++.+.||.++.. ..+.|+.|+|||+
T Consensus 372 ~~~~~l~RAvlEgia~~~r~~~~-~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~-~~~~e~~alGaA~ 446 (506)
T 3h3n_X 372 TTKEDFVRATLQAVAYQSKDVID-TMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQR-AANLETTALGAAY 446 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEE-CSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEe-cCCCcchhHHHHH
Confidence 3677665433 333334444443 3333 454 4678999999999999999999999987754 3466799999999
Q ss_pred HHHhhcCCc
Q psy7891 415 KAADLSTGF 423 (929)
Q Consensus 415 ~aa~~s~~f 423 (929)
.|+.-.+.|
T Consensus 447 lA~~a~G~~ 455 (506)
T 3h3n_X 447 LAGLAVGFW 455 (506)
T ss_dssp HHHHHTTSS
T ss_pred HHHHHhCcc
Confidence 999777654
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0039 Score=72.84 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=55.5
Q ss_pred eHHHHHHHH-HHHHhHHHHHHHHHHHHcC-CCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 338 TRAEFEALN-EDLFDRVGYPVEQALKSSA-VPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 338 tR~efe~l~-~~l~~~i~~~i~~~L~~a~-~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
+|.++-+.+ +.+.-.+...++ .|+..+ ... .++.|.++||++|.|.+.+++.+.||.++... ...|+.|+|||+.
T Consensus 393 ~~~~l~RAvlEgia~~~r~~l~-~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~l 469 (520)
T 4e1j_A 393 GPAEFARAALEAVCYQTRDLLE-AMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWL 469 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHH
Confidence 576665433 333333333333 333331 011 56789999999999999999999999877653 4567999999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.|
T Consensus 470 A~~a~G~~ 477 (520)
T 4e1j_A 470 AGSRAGVW 477 (520)
T ss_dssp HHHHHTSS
T ss_pred HHHHcCCc
Confidence 99877654
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.039 Score=60.34 Aligned_cols=47 Identities=15% Similarity=0.081 Sum_probs=39.8
Q ss_pred ccEEEEEcC-CcCCHHHHHHHHHHhC------CccCCCCCchHHHHhhHHHHHH
Q psy7891 371 ISQVILVGA-GTRVPKVQEKITKVVG------VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 371 I~~ViLvGG-~sriP~v~~~l~~~f~------~~i~~~~n~deaVA~GAa~~aa 417 (929)
++.|+++|| .++.|.+++.|.+.++ .++....++.-+-|+|||+.+.
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~~ 359 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELF 359 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHHT
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHhc
Confidence 346999999 8999999999999973 4666777899999999999753
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0081 Score=70.70 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=60.7
Q ss_pred EEEeHHHHHHHHHHHHhHHHHHHHH---HHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhh
Q psy7891 335 LLVTRAEFEALNEDLFDRVGYPVEQ---ALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALG 411 (929)
Q Consensus 335 ~~itR~efe~l~~~l~~~i~~~i~~---~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~G 411 (929)
..-+|.++-.++.-+++-+.--++. +|+..+. .++.|.++||++|.+.+.+++.+.||.++... ...|+.|+|
T Consensus 407 ~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~---~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~-~~~e~~alG 482 (554)
T 3l0q_A 407 LSTTPEDMALRYLATIQALALGTRHIIETMNQNGY---NIDTMMASGGGTKNPIFVQEHANATGCAMLLP-EESEAMLLG 482 (554)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCEEEEESGGGGCHHHHHHHHHHHCCEEEEE-SCSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEeCccccCHHHHHHHHHhhCCeEEec-CCCcchHHH
Confidence 3447888844333444433333333 4444444 57899999999999999999999999877554 346799999
Q ss_pred HHHHHHhhcCCc
Q psy7891 412 AVYKAADLSTGF 423 (929)
Q Consensus 412 Aa~~aa~~s~~f 423 (929)
||+.|+.-.+.|
T Consensus 483 AA~lA~~a~G~~ 494 (554)
T 3l0q_A 483 SAMMGTVAAGVF 494 (554)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCc
Confidence 999999877654
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.42 Score=51.98 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCccCCCC---CchHHHHhhHHHHHHh
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKNL---NTDEAAALGAVYKAAD 418 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~~---n~deaVA~GAa~~aa~ 418 (929)
+.+.+...+.++++..+ ++.|+|+||...-..+++.|.+.+ |.++..+. -.|.++++|+|.+...
T Consensus 228 l~~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 228 AFAALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp HHHHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 33444445555555433 568999999999999999999877 43443333 4567889998876543
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.97 Score=48.14 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=36.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
+.+.|+|.||.+..+.+.+.|++.+. .++.... .+.+.++||++.+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 44679999998877888888888776 3454444 567899999988754
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.72 Score=49.80 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=30.8
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.|++ +.+.|+..|+|++..+..... . ..+++++-+|.| .-.+++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~---~-~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQ---G-HDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTT---T-CSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCC---C-CCCEEEEEeCcc-eEEEEEE
Confidence 4787 589999999998754432211 1 467888888988 5555553
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.015 Score=67.72 Aligned_cols=80 Identities=24% Similarity=0.410 Sum_probs=57.7
Q ss_pred eHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-..+ +.+.-.+...+ +.|+..+. .++.|.++||++|.+.+.+++.+.||.++... ...|+.|+|||+.|
T Consensus 395 ~~~~l~RAvlEgia~~~r~~l-~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA 469 (515)
T 3i8b_A 395 TRENLARAFVEGLLCSQRDCL-ELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQA 469 (515)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHH
Confidence 677665433 33333444333 34555555 46789999999999999999999999877553 45678999999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 470 ~~a~G~ 475 (515)
T 3i8b_A 470 AWVLSG 475 (515)
T ss_dssp HHHHHC
T ss_pred HHHcCC
Confidence 876654
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.82 E-value=1.1 Score=48.67 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=33.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCC---------ccCCCCCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGV---------ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~---------~i~~~~n~deaVA~GAa~~a 416 (929)
+.+.|+|-||.+..+.+.+.|++.+.. ++....-.+.+.++|||+.+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 346889999988888777777776642 12233346789999998764
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.017 Score=66.99 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=58.7
Q ss_pred eHHHHHHHH-HHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALN-EDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~-~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-+.+ +.+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+.||.++... ...|+.|+|||+.|
T Consensus 374 ~~~~l~RAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la 449 (501)
T 3g25_A 374 EKEHFIRATLESLCYQTRDVMEAMSKDSGI---DVQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLA 449 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHH
Confidence 576665433 33333444444433233555 46789999999999999999999999877543 46679999999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.|
T Consensus 450 ~~a~G~~ 456 (501)
T 3g25_A 450 GLAVGFW 456 (501)
T ss_dssp HHHTTSS
T ss_pred HHHhCcc
Confidence 9777654
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.015 Score=67.56 Aligned_cols=81 Identities=17% Similarity=0.028 Sum_probs=58.1
Q ss_pred eHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.+|-+.+- .+.-.+...+ +.|+..+. .++.|.++||++|.+.+.+++.+.||.++..... .|+.|+|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA 445 (508)
T 3ifr_A 371 TRGHLWRALLEAVALAFRHHV-AVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVA 445 (508)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHH
Confidence 6777654433 3333333333 34455554 4678999999999999999999999987765543 568899999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.|
T Consensus 446 ~~a~G~~ 452 (508)
T 3ifr_A 446 AIGGGDD 452 (508)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 8776644
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.016 Score=67.80 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=56.7
Q ss_pred eHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHH
Q psy7891 338 TRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 338 tR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa 417 (929)
+|.+|- .-+++-+.--++.+++..+.....++.|.++||+++.+.+.+++.+.||.++... ...|+.|+|||+.|+
T Consensus 405 ~~~~l~---RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~ 480 (538)
T 4bc3_A 405 PGDVEV---RALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAF 480 (538)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHH
Confidence 455543 3344444444444444444334467889999999999999999999999877554 457899999999998
Q ss_pred hhcC
Q psy7891 418 DLST 421 (929)
Q Consensus 418 ~~s~ 421 (929)
.-.+
T Consensus 481 ~a~G 484 (538)
T 4bc3_A 481 HGLA 484 (538)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6554
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.42 Score=51.23 Aligned_cols=48 Identities=23% Similarity=0.140 Sum_probs=31.3
Q ss_pred CccEEEEEcCCc-CC-HHHHHHHHHHhC--------CccCCCCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVGAGT-RV-PKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvGG~s-ri-P~v~~~l~~~f~--------~~i~~~~n~deaVA~GAa~~aa 417 (929)
+.+.|+|-||.+ +. +.+.+.|++.+. ..+....-.+.+.++|||+.+.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 346788888877 54 555555555443 1233444567899999998875
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=66.76 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=44.8
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhcCCc
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLSTGF 423 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s~~f 423 (929)
.++.|.++||+++.+.+.+++.+.||.++.... ..|+.|+|||+.|+.-.+.|
T Consensus 393 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~~~~g~~ 445 (497)
T 2zf5_O 393 QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAGLAVDYW 445 (497)
T ss_dssp CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHHHHTTSS
T ss_pred CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHHHHhCcc
Confidence 578899999999999999999999998776544 45699999999998766543
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=67.32 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=57.3
Q ss_pred eHHHHHHH-HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-+. ++.+.-.+...++ .|+..+. .++.|.++||+++.+.+.+++.+.||.++......+.+.|+|||+.|
T Consensus 357 ~~~~~~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA 432 (484)
T 2itm_A 357 GPNELARAVLEGVGYALADGMD-VVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHHTTTC---CCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHH
Confidence 56665443 3333333333333 3444443 46789999999999999999999999888766555545899999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.+
T Consensus 433 ~~~~g~~ 439 (484)
T 2itm_A 433 QIAANPE 439 (484)
T ss_dssp HHHHCTT
T ss_pred HHHcCCc
Confidence 8766543
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.64 Score=49.65 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=36.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhCC------ccCCCCCchHHHHhhHHHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVGV------ELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~~------~i~~~~n~deaVA~GAa~~aa~ 418 (929)
+.+.|+|-||.++.+.+.+.|++.+.. .+......+.+.++|||+.+..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 456899999999888777888877752 2333445678999999988754
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.18 Score=54.61 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=32.9
Q ss_pred CccEEEEEcCCcCC-HHHHHHHHHHhC----------CccCCCCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVGAGTRV-PKVQEKITKVVG----------VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvGG~sri-P~v~~~l~~~f~----------~~i~~~~n~deaVA~GAa~~aa 417 (929)
+.+.|+|-||.++. +.+.+.|++.+. ..+......+.+.++|||+++.
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 34689999998886 555555554442 1344555677899999998764
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=4.2 Score=44.03 Aligned_cols=67 Identities=4% Similarity=-0.072 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhh-c-cc-ccceEEEEecCCCCHHHHHHHHHHHHH-cC---CcEEEEechhHHHHHHh
Q psy7891 138 VEELVAMLLHKAREYASVS-A-GQ-VINEAVIIVPGYFNQIERQSMLKAGEL-AG---LKVLQLMNDYTAVALNY 205 (929)
Q Consensus 138 ~eel~a~~L~~lk~~a~~~-~-~~-~v~~~VItVPa~f~~~qR~al~~Aa~~-AG---l~~~~li~EptAAAl~y 205 (929)
+++++..+...+.+..... . .. .+..+.|++|...+......+.+..+. .| ++ +.+.|+..|||+++
T Consensus 45 ~~~~~~~i~~~i~~~~~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~p-v~v~NDa~aaa~a~ 118 (347)
T 2ch5_A 45 TDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSES-YLITTDAAGSIATA 118 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSC-EEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCce-EEEECcHHHHHHhh
Confidence 4444444444444444332 1 12 577899999999987665566665543 34 44 58999999999884
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.041 Score=63.84 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=58.6
Q ss_pred eHHHHHHH-HHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEAL-NEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~l-~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-+. ++.+.-.+...++..-+..+. .++.|.++||+++.+.+.+++.+.||.++... ...|+.|+|||+.|
T Consensus 373 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA 448 (504)
T 2d4w_A 373 NRNHIARAALEATAFQSREVVDAMNADSGV---DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAA 448 (504)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHH
Confidence 57766543 344444444444433233454 46789999999999999999999999877544 44679999999999
Q ss_pred HhhcCCc
Q psy7891 417 ADLSTGF 423 (929)
Q Consensus 417 a~~s~~f 423 (929)
+.-.+.|
T Consensus 449 ~~~~G~~ 455 (504)
T 2d4w_A 449 GIAVGFW 455 (504)
T ss_dssp HHHHTSS
T ss_pred HhhcCcc
Confidence 8776543
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.6 Score=47.00 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=33.3
Q ss_pred ccEEEEEcCCcC-CHHHHHHHHHHhCC----------ccCCCCCchHHHHhhHHHHHHhh
Q psy7891 371 ISQVILVGAGTR-VPKVQEKITKVVGV----------ELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 371 I~~ViLvGG~sr-iP~v~~~l~~~f~~----------~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
.+.|+|.||.++ .+.+.+.|++.+.. ++......+.+.++|||+.+...
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~~ 322 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQF 322 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHHh
Confidence 457888898886 57777777666531 22233356779999999887543
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.045 Score=63.48 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=57.5
Q ss_pred eHHHHHH-HHHHHHhHHHHHHHHHHHHcCCCCCCc-cEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHH
Q psy7891 338 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVI-SQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 338 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~I-~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~ 415 (929)
+|.++-. +++.+.-.+...++..-+..+. .+ +.|.++||+++.+.+.+++.+.||.++... ...|+.|+|||+.
T Consensus 376 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~l 451 (503)
T 2w40_A 376 ERSHIVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVL 451 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHH
Confidence 5666654 3344444444444433222454 35 679999999999999999999999877544 4556999999999
Q ss_pred HHhhcCCc
Q psy7891 416 AADLSTGF 423 (929)
Q Consensus 416 aa~~s~~f 423 (929)
|+.-.+.|
T Consensus 452 a~~~~G~~ 459 (503)
T 2w40_A 452 AGLEVKIW 459 (503)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCcc
Confidence 98766543
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.051 Score=62.94 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=56.6
Q ss_pred eHHHHHH-HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHH
Q psy7891 338 TRAEFEA-LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 338 tR~efe~-l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~a 416 (929)
+|.++-. +++.+.-.+...++..-+..+. .++.|.++||++|.+.+.+++.+.+|.++... ...|+.|+|||+.|
T Consensus 368 ~~~~~~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHLARAALEGVAFQVRDVVLAMEEEAGV---RLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMA 443 (495)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSC---CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHH
Confidence 5666543 3344444444444432222343 45789999999999999999999999877544 34569999999999
Q ss_pred HhhcCC
Q psy7891 417 ADLSTG 422 (929)
Q Consensus 417 a~~s~~ 422 (929)
+.-.+.
T Consensus 444 ~~a~G~ 449 (495)
T 2dpn_A 444 GVGAGA 449 (495)
T ss_dssp HHHHTS
T ss_pred HhhcCc
Confidence 876653
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.051 Score=62.80 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=54.6
Q ss_pred EEEeHHHHHHHH-HHHHhHHHHHHHHHHHH-cCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhH
Q psy7891 335 LLVTRAEFEALN-EDLFDRVGYPVEQALKS-SAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGA 412 (929)
Q Consensus 335 ~~itR~efe~l~-~~l~~~i~~~i~~~L~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GA 412 (929)
..-+|.+|-+.+ +.+.-.+...++ .|+. .+. .++.|.++||++|.+.+.+++.+.||.++.... .|+.|+||
T Consensus 360 ~~~t~~~l~RAvlEgia~~~r~~~~-~l~~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGa 433 (489)
T 2uyt_A 360 IPESDAELARCIFDSLALLYADVLH-ELAQLRGE---DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGN 433 (489)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHH-HHHHHHTC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhCC---CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHH
Confidence 345677765433 333334444443 3333 454 467899999999999999999999998776443 58999999
Q ss_pred HHHHHhhc
Q psy7891 413 VYKAADLS 420 (929)
Q Consensus 413 a~~aa~~s 420 (929)
|+.|+.-.
T Consensus 434 a~~A~~a~ 441 (489)
T 2uyt_A 434 IGIQLMTL 441 (489)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66665433
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.12 Score=46.78 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=57.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHH
Q psy7891 757 ERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRS 836 (929)
Q Consensus 757 ~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~d 836 (929)
.|-++...|..++..+++.|.. +.+ ...++++++..|...|+++..||+.. .-....+
T Consensus 6 e~ieakN~lEs~iy~~e~~l~e-----~~~-----~~kl~~eek~~i~~~i~e~~~wL~~~------------~~a~~e~ 63 (113)
T 3lof_A 6 ERVSAKNALESYAFNMKSAVED-----EGL-----KGKISEADKKKVLDKCQEVISWLDAN------------TLAEKDE 63 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-----GGG-----BTTBCHHHHHHHHHHHHHHHHHHHHC------------TTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----hhh-----hccCCHHHHHHHHHHHHHHHHHHHcC------------CcCCHHH
Confidence 3445556666666666654432 111 15799999999999999999999751 1124789
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy7891 837 IVEKIRALEREVRYLENKSK 856 (929)
Q Consensus 837 i~~k~~~l~~~~~~i~~k~k 856 (929)
|+.|++.|+..+.+|+.++-
T Consensus 64 i~~k~~eL~~~~~~i~~k~y 83 (113)
T 3lof_A 64 FEHKRKELEQVCNPIISGLY 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998873
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.58 E-value=1.5 Score=46.40 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=32.2
Q ss_pred CccEEEEEcCCcCCHHHHHHHHHHhC------------CccCCCCCchHHHHhhHHHHHHh
Q psy7891 370 VISQVILVGAGTRVPKVQEKITKVVG------------VELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~~f~------------~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
+.+.|+|.||.+..+.+.+.|++.+. .++....-.+.+.++|||..+..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 34578888888777777666665542 12222334567899999988754
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.83 E-value=1.8 Score=46.66 Aligned_cols=45 Identities=20% Similarity=0.027 Sum_probs=29.9
Q ss_pred cCCcEEEEechhHHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 187 AGLKVLQLMNDYTAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 187 AGl~~~~li~EptAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.|++ +.+.|+..|||++..+..... . ..+++++-+|.| .-.+++.
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~---~-~~~~v~l~~GtG-iG~giv~ 164 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFT---Q-YPLVMGLILGTG-VGGGLVL 164 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGG---G-CSEEEEEEESSS-EEEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCC---C-CCcEEEEEECCc-EEEEEEE
Confidence 4776 589999999998754332211 1 567888888988 4455543
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.27 Score=53.16 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcEEEEechh-HHHHHHhcccccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDY-TAVALNYGIFKRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSV 257 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~Ep-tAAAl~y~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v 257 (929)
.+..+-+..|+++ .+|+.. +|.....|...... . ....+|+|+|||||.++++. .| .+
T Consensus 102 fl~~v~~~~G~~i-~vIsg~eEA~l~~~gv~~~l~---~-~~~~lvvDIGGGStEl~~~~--------~~------~~-- 160 (315)
T 1t6c_A 102 FLERVKREVGLVV-EVITPEQEGRYAYLAVAYSLK---P-EGEVCVVDQGGGSTEYVFGK--------GY------KV-- 160 (315)
T ss_dssp HHHHHHHHTCCCE-EECCHHHHHHHHHHHHHHHTC---C-CSEEEEEEEETTEEEEEEEE--------TT------EE--
T ss_pred HHHHHHHHHCCCE-EEcCHHHHHHHHHHHHHhhcc---c-CCCEEEEEeCCCcEEEEEEe--------CC------ce--
Confidence 3444444679987 555544 44443334433221 2 46799999999999999975 12 22
Q ss_pred EEEecCCCcchHHHHHHH
Q psy7891 258 LGVGYDRTLGGLEMQIRL 275 (929)
Q Consensus 258 ~~~~~d~~lGG~~~D~~l 275 (929)
. ...+..+|+..+.+.+
T Consensus 161 ~-~~~Sl~~G~v~l~e~~ 177 (315)
T 1t6c_A 161 R-EVISLPIGIVNLTETF 177 (315)
T ss_dssp E-EEEEECCCHHHHHHHH
T ss_pred e-eEEEEeccHHHHHHHh
Confidence 1 1233579998766553
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=92.30 E-value=16 Score=40.17 Aligned_cols=48 Identities=23% Similarity=0.239 Sum_probs=31.0
Q ss_pred CccEEEEEcCCcCC-HHHHHHHHHHhCC--------ccCCCCCchHHHHhhHHHHHH
Q psy7891 370 VISQVILVGAGTRV-PKVQEKITKVVGV--------ELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 370 ~I~~ViLvGG~sri-P~v~~~l~~~f~~--------~i~~~~n~deaVA~GAa~~aa 417 (929)
+.+.|+|.||.++. |.+.+.|++.+.. .+......+.+.++|||..+.
T Consensus 314 dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 314 GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 34578888888764 6666666665531 222233456689999998764
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=91.76 E-value=1 Score=45.78 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHH
Q psy7891 760 EALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVE 839 (929)
Q Consensus 760 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~ 839 (929)
++...+..++..+++.+..+. ..++.+++..+.+.++++..||+.. ...+|+.
T Consensus 146 e~kn~le~~i~~~~~~l~~~~------------~~l~~~~k~~i~~~l~~~~~~L~~~---------------~~~~i~~ 198 (219)
T 4e81_A 146 QTRNQGDHLLHSTRKQVEEAG------------DKLPADDKTAIESALTALETALKGE---------------DKAAIEA 198 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG------------GGSCHHHHHHHHHHHHHHHHHHHSS---------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh------------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHH
Confidence 334556666666666665421 4578899999999999999999752 3689999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy7891 840 KIRALEREVRYLENKS 855 (929)
Q Consensus 840 k~~~l~~~~~~i~~k~ 855 (929)
++++|+..+.++..+.
T Consensus 199 ~~~~L~~~~~~i~~~~ 214 (219)
T 4e81_A 199 KMQELAQVSQKLMEIA 214 (219)
T ss_dssp HHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998654
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=90.63 E-value=16 Score=39.39 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=47.9
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHh---CCccCCC---CCchHHHHhhHHHHHHhhc
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV---GVELSKN---LNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f---~~~i~~~---~n~deaVA~GAa~~aa~~s 420 (929)
+.+.+...+.++++..+ ++.|+|.||...-.++++.|.+.+ |.++..+ +-.|-++++|+|.+.....
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~ 305 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKS 305 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHc
Confidence 44455556666666554 468999999999999999999887 4343332 2578899999987655443
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=1.4 Score=45.01 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHH
Q psy7891 758 RPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSI 837 (929)
Q Consensus 758 rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di 837 (929)
+-++...+..++..++..+..+. ..++++++..+...+++++.||+.. ...++
T Consensus 141 ~~e~kn~le~~i~~~~~~l~~~~------------~~~~~~~k~~i~~~l~~~~~wl~~~---------------d~~~~ 193 (227)
T 1u00_A 141 LAEQKVEAARVLESLHGALAADA------------ALLSAAERQVIDDAAAHLSEVAQGD---------------DVDAI 193 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG------------GGSCHHHHHHHHHHHHHHHHHTTSS---------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh------------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHH
Confidence 33445555666666666665421 4588999999999999999999621 25789
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy7891 838 VEKIRALEREVRYLENKS 855 (929)
Q Consensus 838 ~~k~~~l~~~~~~i~~k~ 855 (929)
+.|+++|+..+.+|..++
T Consensus 194 ~~~~~~L~~~~~~i~~r~ 211 (227)
T 1u00_A 194 EQAIKNVDKQTQDFAARR 211 (227)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.25 Score=56.78 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=41.0
Q ss_pred cEEEEEcCCcCCHHHHHHHHHH-hCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 372 SQVILVGAGTRVPKVQEKITKV-VGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 372 ~~ViLvGG~sriP~v~~~l~~~-f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
+.|.++||++|.|.+.+++.++ ||.++.+.. ..|+.|+|||+.|+.-
T Consensus 389 ~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 389 GRILVEGRFAEADVFVRALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp SEEEEESGGGGCHHHHHHHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred CeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 6899999999999999999999 998775554 4568899999999855
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.08 E-value=1.3 Score=40.38 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=59.0
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccee
Q psy7891 754 EHQERPEALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLT 833 (929)
Q Consensus 754 e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~ 833 (929)
....+-++...+..+|..+++.|.. +.+ ...++++++..|...|+++..||+.. +. -.
T Consensus 12 ~~re~iEarN~aEsliy~~e~~L~e-----~~~-----~dkl~~eek~~I~~~i~el~~~L~~~---~~---------ad 69 (120)
T 2p32_A 12 SGLVPRGSHMGLESYAFNLKQTIED-----EKL-----KDKISPEDKKKIEDKCDEILKWLDSN---QT---------AE 69 (120)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHTC-----TTT-----GGGSCHHHHHHHHHHHHHHHHHHHHH---TT---------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----hhh-----hccCCHHHHHHHHHHHHHHHHHHHcC---Cc---------CC
Confidence 3455667777777777777765532 111 14689999999999999999999741 10 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q psy7891 834 IRSIVEKIRALEREVRYLENKS 855 (929)
Q Consensus 834 ~~di~~k~~~l~~~~~~i~~k~ 855 (929)
..+|+.++++|+..+.+|+.++
T Consensus 70 ~e~ik~k~~eL~~~~~~i~~k~ 91 (120)
T 2p32_A 70 KEEFEHQQKDLEGLANPIISKL 91 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998766
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=88.48 E-value=2.8 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.5
Q ss_pred CeEEEEEcCccceEEEEEECC
Q psy7891 25 IAVMSVDLGSEWMKVAIVSPG 45 (929)
Q Consensus 25 ~~vvGID~GTt~s~va~~~~g 45 (929)
+..++||+|+|++++|++..+
T Consensus 3 ~M~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 3 PMYLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp CEEEEEEECSSEEEEEEESSS
T ss_pred ceEEEEEECCCeEEEEEEECC
Confidence 357999999999999999865
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=87.58 E-value=1.9 Score=38.72 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHH
Q psy7891 762 LKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKI 841 (929)
Q Consensus 762 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 841 (929)
-..+..++..+++.+.. +.+ ...++++++..|...|+++..||+..... ...+|+.++
T Consensus 6 rN~aE~~iy~~e~~L~~-----~e~-----~~kl~~~ek~~i~~~i~~l~~~L~~~~~a------------d~~~i~~~~ 63 (113)
T 1ud0_A 6 SHMLESYAFNMKATVED-----EKL-----QGKINDEDKQKILDKCNEIISWLDKNQTA------------EKEEFEHQQ 63 (113)
T ss_dssp HHHHHHHHHHHHHHHTS-----GGG-----TTTSCHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc-----hhh-----hccCCHHHHHHHHHHHHHHHHHHHcCCcc------------CHHHHHHHH
Confidence 34455566655554431 011 15799999999999999999999742110 136799999
Q ss_pred HHHHHHHHHHHhcc
Q psy7891 842 RALEREVRYLENKS 855 (929)
Q Consensus 842 ~~l~~~~~~i~~k~ 855 (929)
+.|+..+.+|..++
T Consensus 64 ~~L~~~~~~i~~~~ 77 (113)
T 1ud0_A 64 KELEKVCNPIITKL 77 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998766
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=48 Score=38.16 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhC
Q psy7891 349 LFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395 (929)
Q Consensus 349 l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~ 395 (929)
+++-+...+.++++..+ ++.|+|+||-+.-..+++.|.+.+.
T Consensus 232 ~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 232 AFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 34444555566666554 4689999999999999999998764
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=86.69 E-value=1.4 Score=47.34 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.+..+-+..|+++ .+|+...=|.+.| |...... .. ....||+|+|||||.++++.
T Consensus 94 fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~--~~-~~~~lviDIGGGStEl~~~~ 149 (315)
T 3mdq_A 94 LIDRIKKEVNIDV-EVIDGAREAELIFRGVQQAVP--ME-DHISLAMDIGGGSVEFIIGN 149 (315)
T ss_dssp HHHHHHHHHCCCE-EECCHHHHHHHHHHHHHHHSC--CT-TCCEEEEEECSSCEEEEEEC
T ss_pred HHHHHHHHHCCCe-EEeCHHHHHHHHHHHHHhcCC--CC-CCCEEEEEeCCCceEEEEEE
Confidence 3444555679987 6666555444443 4433222 12 45799999999999999986
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.69 E-value=2.3 Score=50.21 Aligned_cols=69 Identities=7% Similarity=0.068 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHH
Q psy7891 760 EALKSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVE 839 (929)
Q Consensus 760 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~ 839 (929)
++...+..++..++..+..+. ..+++++++.+.+.+++++.||+.. ...+++.
T Consensus 534 ~~~n~~e~~~~~~~~~l~~~~------------~~~~~~~~~~i~~~~~~~~~~l~~~---------------~~~~~~~ 586 (605)
T 2kho_A 534 QTRNQGDHLLHSTRKQVEEAG------------DKLPADDKTAIESALTALETALKGE---------------DKAAIEA 586 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG------------GGSCHHHHHHHHHHHHHHHHHTTSS---------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh------------ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHH
Confidence 344455566666666554421 4588999999999999999999621 5688999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy7891 840 KIRALEREVRYLENKS 855 (929)
Q Consensus 840 k~~~l~~~~~~i~~k~ 855 (929)
++++|+..+.++..++
T Consensus 587 ~~~~l~~~~~~~~~~~ 602 (605)
T 2kho_A 587 KMQELAQVSQKLMEIA 602 (605)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=83.66 E-value=4.8 Score=47.44 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHH
Q psy7891 763 KSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842 (929)
Q Consensus 763 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~ 842 (929)
..+..++..+++.+..+. ..+++++++.+...+++++.||+.. ...+++.+.+
T Consensus 537 n~~e~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~~ 589 (605)
T 4b9q_A 537 NQGDHLLHSTRKQVEEAG------------DKLPADDKTAIESALTALETALKGE---------------DKAAIEAKMQ 589 (605)
T ss_dssp HHHHHHHHHHHHHHHHHG------------GGSCHHHHHHHHHHHHHHHHHHHSS---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh------------hhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Confidence 445556666665555421 4688899999999999999999732 1579999999
Q ss_pred HHHHHHHHHHhcc
Q psy7891 843 ALEREVRYLENKS 855 (929)
Q Consensus 843 ~l~~~~~~i~~k~ 855 (929)
+|+..+.+++.++
T Consensus 590 ~l~~~~~~~~~~~ 602 (605)
T 4b9q_A 590 ELAQVSQKLMEIA 602 (605)
T ss_dssp HHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998776
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=83.50 E-value=2 Score=46.86 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.+..+-+..|+++ .+|+...=|.+.| |.......... ...++++|+|||||+++++.
T Consensus 107 fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~-~~~~lviDIGGGStel~~~~ 164 (343)
T 3cer_A 107 FEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDL-PAPYLVVDLGGGSTELVIGG 164 (343)
T ss_dssp HHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTC-CSSEEEEEECSSCEEEEECC
T ss_pred HHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccc-cCCEEEEEeCCCceEEEEee
Confidence 3444445579986 7777666555555 33222211001 35699999999999999865
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=83.30 E-value=4 Score=47.07 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=61.6
Q ss_pred eeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHH------HHHHHHHHcCCcEEEEechhHHHHHHh-ccc
Q psy7891 136 YHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQ------SMLKAGELAGLKVLQLMNDYTAVALNY-GIF 208 (929)
Q Consensus 136 ~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~------al~~Aa~~AGl~~~~li~EptAAAl~y-~~~ 208 (929)
++++ .+...+.-|+...+..-+..+.++.+ .-|..-|. .+..+-+..|+++ .+|+...=|.+.| |..
T Consensus 57 Ls~e-ai~r~~~~L~~f~~~~~~~~v~~v~~----vATsA~R~A~N~~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~ 130 (513)
T 1u6z_A 57 LSEE-AMTRGLNCLSLFAERLQGFSPASVCI----VGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVE 130 (513)
T ss_dssp BCHH-HHHHHHHHHHHHHHHTTTCCGGGEEE----EECHHHHHCTTHHHHHHHHTTTCSSCE-EECCHHHHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHHHHHHHhCCCCEEEE----EecHHHHcCcCHHHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHH
Confidence 4433 34444444444444333334444321 23444443 3444444569987 7777666555554 443
Q ss_pred ccccCCCCCCcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHH
Q psy7891 209 KRKDFNETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRL 275 (929)
Q Consensus 209 ~~~~~~~~~~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l 275 (929)
.... . ....+|+|+|||||.++++. .| .+ .. .....+|...+.+.+
T Consensus 131 ~~~~--~--~~~~lviDIGGGStEl~~~~--------~~------~~--~~-~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 131 HTQP--E--KGRKLVIDIGGGSTELVIGE--------NF------EP--IL-VESRRMGCVSFAQLY 176 (513)
T ss_dssp HHSC--C--CSCEEEEEECSSCEEEEEEE--------TT------EE--EE-EEEESCCHHHHHHHH
T ss_pred hhcc--C--CCCEEEEEECCCcEEEEEEe--------CC------ee--eE-EEEEeccHHHHHHHH
Confidence 3222 1 23689999999999999875 12 22 11 223579988776554
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.12 E-value=3.4 Score=47.57 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCcEEEEechhHHHHHHh-cccccccCCCCCCcEEEEEEcCCceEEEEEEE
Q psy7891 179 SMLKAGELAGLKVLQLMNDYTAVALNY-GIFKRKDFNETNPVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 179 al~~Aa~~AGl~~~~li~EptAAAl~y-~~~~~~~~~~~~~~~vlv~D~GggT~dvsvv~ 237 (929)
.+..+-+..|+++ .+|+...=|.+.| |...... ....||+|+|||||.++++.
T Consensus 105 fl~~i~~~tG~~i-evIsG~EEA~l~~~gv~~~~~-----~~~~lvvDIGGGStEl~~~~ 158 (508)
T 3hi0_A 105 FIREAEAILGCEI-EVLSGEKEALYSAYGVISGFY-----QPDGIAGDLGGGSLELIDIK 158 (508)
T ss_dssp HHHHHHHHHTSCE-EECCHHHHHHHHHHHHHHHSS-----SCEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHCCCe-EEecHHHHHHHHHHHHHhcCC-----CCCeEEEEeCCCceEEEEee
Confidence 4555555679987 7776665555444 4433322 23459999999999999986
|
| >3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.75 E-value=29 Score=30.47 Aligned_cols=89 Identities=11% Similarity=0.204 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhhhc--------CCCCCHHHHHHHHHHHHhchhhHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Q psy7891 707 ESKTIVDKIDEITNWLEED--------GWNAEADVLENKLNEINSLVVPIWERHREHQERPEALKSLNNALNVSVTFYNS 778 (929)
Q Consensus 707 er~~l~~~l~e~~~WL~~d--------~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~ 778 (929)
+...|...++++..||.+- ....+.+.+...+++.+.+..-|..+- ..+..+...+..++..
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~----------~~v~~~~~~g~~L~~~ 72 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQ----------GRVGNILQLGSKLIGT 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHc
Confidence 4567888889999999631 112455566666666666666555432 2223344444444443
Q ss_pred hhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy7891 779 IKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEK 819 (929)
Q Consensus 779 ~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~ 819 (929)
.|++.++...|...++....-|+....
T Consensus 73 --------------~~~~~~~~~~i~~~l~~l~~rw~~L~~ 99 (119)
T 3uun_A 73 --------------GKLSEDEETEVQEQMNLLNSRWECLRV 99 (119)
T ss_dssp --------------TCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777788888877777766443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 929 | ||||
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 7e-43 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 1e-42 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 2e-39 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 5e-39 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 8e-13 | |
| d1ud0a_ | 84 | a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: | 2e-11 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 4e-09 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 0.004 |
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 152 bits (384), Expect = 7e-43
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 1/184 (0%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPS 86
+ +DLGS + V + G EI N + R TP+ VAF ER G+ A+ P+
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 87 NSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLL 146
N+ L+G+ D VVQ +P+ + V + + ++ EE+ +M+L
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 147 HKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNYG 206
K +E A G+ + AV+ VP YFN +RQ+ AG +AGL VL+++N+ TA A+ YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 207 IFKR 210
+ K+
Sbjct: 182 LDKK 185
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 151 bits (384), Expect = 1e-42
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 220 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 279
+ YD+G + +SI+ V + VL D LGG + RL ++L
Sbjct: 4 TIAVYDLGGGTFDISIIEIDEVDGE--------KTFEVLATNGDTHLGGEDFDSRLINYL 55
Query: 280 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEI----DFKL 335
++F K D+ +P A+ +L + A + K LS+ + + + + +
Sbjct: 56 VEEFK--KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNI 113
Query: 336 LVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVG 395
VTRA+ E+L EDL +R ++ AL+ + + + I VILVG TR+P VQ+K+ + G
Sbjct: 114 KVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFG 173
Query: 396 VELSKNLNTDEAAALGAVYKAADLS 420
E K++N DEA A+GA + L+
Sbjct: 174 KEPRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 142 bits (360), Expect = 2e-39
Identities = 73/202 (36%), Positives = 108/202 (53%), Gaps = 15/202 (7%)
Query: 220 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFL 279
+V+ +D+G + VSI++ E G E V D LGG + R+ +
Sbjct: 6 NVLIFDLGGGTFDVSILTI------EDGIFE------VKSTAGDTHLGGEDFDNRMVNHF 53
Query: 280 GKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTR 339
+F +K KD+ EN RAV +L R K LS++ + +I+ L + IDF +TR
Sbjct: 54 IAEF--KRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR 111
Query: 340 AEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVV-GVEL 398
A FE LN DLF PVE+AL+ + + I ++LVG TR+PK+Q+ + G EL
Sbjct: 112 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 171
Query: 399 SKNLNTDEAAALGAVYKAADLS 420
+K++N DEA A GA +AA LS
Sbjct: 172 NKSINPDEAVAYGAAVQAAILS 193
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 141 bits (356), Expect = 5e-39
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHK-GERTFGEDAQIIGTRFP 85
++ +DLG+ VAI+ P + N E R TP+++A+ + GE G+ A+ P
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTP-RVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 86 SNSYGYFLDLLGKSIDSPVVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAML 145
N+ L+G+ VQ S P+ + + G + + ++ A +
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFK--IIAADNGDAWVEVKGQK-MAPPQISAEV 117
Query: 146 LHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205
L K ++ A G+ + EAVI VP YFN +RQ+ AG +AGL+V +++N+ TA AL Y
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 206 GIFK 209
G+ K
Sbjct: 178 GLDK 181
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 66.1 bits (160), Expect = 8e-13
Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 27/202 (13%)
Query: 214 NETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQI 273
N P M D+G +T V+++S + ++ ++
Sbjct: 2 NVEEPSGNMVVDIGGGTTEVAVISLG-------------------SIVTWESIRIAGDEM 42
Query: 274 RLRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDF 333
+ + E + + + E L +
Sbjct: 43 DEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKE-----NDELETTVSGIDLSTGLPR 97
Query: 334 KLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPM---DVISQVILVGAGTRVPKVQEKI 390
KL + E + + V L+ + + + + L G G+ + + +
Sbjct: 98 KLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLL 157
Query: 391 TKVVGVELSKNLNTDEAAALGA 412
K G+ + ++ A A GA
Sbjct: 158 QKETGISVIRSEEPLTAVAKGA 179
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 84 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (142), Expect = 2e-11
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 678 KALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENK 737
+ + LES F+ K+ +E E+ + + I+DK +EI +WL+++ AE + E++
Sbjct: 1 RGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQ-TAEKEEFEHQ 59
Query: 738 LNEINSLVVPI 748
E+ + PI
Sbjct: 60 QKELEKVCNPI 70
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 53.6 bits (128), Expect = 4e-09
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 127 VFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGEL 186
+ + + + ++L A VI VP +ER+++L AG
Sbjct: 58 AIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLE 117
Query: 187 AGLKVLQLMNDYTAVAL 203
AG + L+ + A A+
Sbjct: 118 AGASKVFLIEEPMAAAI 134
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.7 bits (84), Expect = 0.004
Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 50/208 (24%)
Query: 215 ETNPVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIR 274
E P + + D+G+ +T V ++ + V+ + + +G +
Sbjct: 2 EQQPGYGVVIDVGSRTTDVLTINLMDM-------------EPVVELSFSLQIGVGDAISA 48
Query: 275 LRDFLGKKFNEMKKTTKDVFENPRAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFK 334
L + K+ + + LS + G +
Sbjct: 49 LSRKIAKETGFVVPFDLA------------------QEALSHPVMFRQKQVGGPEVS--- 87
Query: 335 LLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPK--VQEKITK 392
E L + + + + + D ++ +I VG G+ + +E
Sbjct: 88 ----GPILEDLANRIIENIRLNLRGEV-------DRVTSLIPVGGGSNLIGDRFEEIAPG 136
Query: 393 VVGVELSKNLNTDEAAALGAVYKAADLS 420
+ + + A ALG AA+ S
Sbjct: 137 TLVKIKPE--DLQFANALGY-RDAAERS 161
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 929 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.83 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.76 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.46 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.4 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.36 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.3 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.99 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 98.93 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.54 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.74 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.5 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.23 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.21 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.19 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.22 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 95.81 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 95.72 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 94.27 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 93.79 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 89.1 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 88.63 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 88.31 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 87.7 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 82.13 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.6e-37 Score=316.87 Aligned_cols=193 Identities=31% Similarity=0.458 Sum_probs=176.8
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
+++||||||||||||+||+++.... + ...+++++++++..+||++||++|++|+.++|..++ +.++..++
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~----~----~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~--~~~~~~~~ 71 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVD----G----EKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQ--GIDLRNDP 71 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC------------CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHH--CCCSTTCH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccC----C----CcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCccCH
Confidence 4789999999999999999986221 1 347899999999999999999999999999999844 45888899
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccC----cceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccE
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDE----IDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQ 373 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~----~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ 373 (929)
+++.||+++||++|+.||.+.++.+.++.+..+ .++.++|||++|+++|+++++++..+|.++|+++++.+.+|+.
T Consensus 72 ~~~~rL~~~~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~ 151 (198)
T d1dkgd2 72 LAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDD 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcE
Confidence 999999999999999999999999999876654 4688999999999999999999999999999999999999999
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 374 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 374 ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
|+|+||+||+|+|++.|+++||.++..++||++|||+|||++||++|
T Consensus 152 v~lvGG~sr~p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 152 VILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp EEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred EEEEcCccCCHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998899999999999999999999886
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.5e-37 Score=312.09 Aligned_cols=189 Identities=36% Similarity=0.525 Sum_probs=179.1
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
+++||||||||||||+||+++. +..+++++++|+..+||++||++|++|+.++|..++ +.++..++
T Consensus 4 e~~VlV~D~GggT~Dvsv~~~~------------~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~--~~~~~~~~ 69 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSILTIE------------DGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKH--KKDISENK 69 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEE------------TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHH--SCCCTTCH
T ss_pred CcEEEEEEeCCCeEEEEEEEEe------------CCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHh--CCCCccCH
Confidence 6899999999999999999986 237899999999999999999999999999998844 45888999
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEE
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLv 377 (929)
+++.+|+.+||++|+.||.+.++.+.++.++.+.++.++|||++|+++++++++++..+|+++|.++++.+.+|+.|+|+
T Consensus 70 ~~~~~l~~~~e~~K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lv 149 (193)
T d1bupa2 70 RAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLV 149 (193)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCHHHHHHHHHHhC-CccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 378 GAGTRVPKVQEKITKVVG-VELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 378 GG~sriP~v~~~l~~~f~-~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
||+||+|+|++.|+++|+ .++..++||++|||+|||++||++|
T Consensus 150 GG~sr~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 150 GGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp SGGGGCHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred CCccccHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999999999999999997 7888899999999999999999886
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.5e-36 Score=303.75 Aligned_cols=182 Identities=33% Similarity=0.525 Sum_probs=166.0
Q ss_pred eEEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEecCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 26 AVMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFHKGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 26 ~vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
.|||||||||||+||++.+| .++++.|.+|+|++||+|+|.++++++|..|.....++|.++++++|||||+.++|+.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g-~~~ii~~~~~~r~~Ps~i~~~~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETT-EEEECCCTTSCSSEECCEEECSSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECC-EEEEEECCCCCccceeEEEECCCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 58999999999999999998 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcC-CceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTN-DNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAG 184 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~-~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa 184 (929)
+...+.+|+...... .+....+... ....++|++|++++|++|++.++.+++.++.++|||||++|++.||++|++||
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 999999988655433 3433444333 34679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEechhHHHHHHhcccc
Q psy7891 185 ELAGLKVLQLMNDYTAVALNYGIFK 209 (929)
Q Consensus 185 ~~AGl~~~~li~EptAAAl~y~~~~ 209 (929)
++|||++++||+||+|||++|++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccC
Confidence 9999999999999999999999865
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.3e-35 Score=298.92 Aligned_cols=179 Identities=32% Similarity=0.471 Sum_probs=166.2
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe-cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCHHH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH-KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSPVV 105 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~~v 105 (929)
|||||||||||+||++.+| .++++.|.+|+|.+||+|+|. ++.+++|..|..+..++|.++++++|||||+.+.|+.+
T Consensus 2 VvGIDfGTt~s~va~~~~~-~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGT-TPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 80 (183)
T ss_dssp CCEEECCSSEEEEEEEETT-EEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred EEEEEcChhcEEEEEEECC-EEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence 7899999999999999988 779999999999999999996 46899999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHHHH
Q psy7891 106 QLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKAGE 185 (929)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~Aa~ 185 (929)
+.....+||..+..+ ++...+.+.+ ..++|++|++++|++|++.++.++|.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~ 157 (183)
T d1dkgd1 81 QRDVSIMPFKIIAAD--NGDAWVEVKG-QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 157 (183)
T ss_dssp HHHTTTCSSEEEECS--SSBEEEEETT-EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCEEEEEcC--CCcEEEEECC-EEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 999999998765544 3556666665 6899999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEechhHHHHHHhcccc
Q psy7891 186 LAGLKVLQLMNDYTAVALNYGIFK 209 (929)
Q Consensus 186 ~AGl~~~~li~EptAAAl~y~~~~ 209 (929)
+|||++++||+||+||||+|++++
T Consensus 158 ~AG~~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 158 IAGLEVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp HTTCEESCCCBHHHHHHHHHTCCC
T ss_pred HcCCCEEEEecCHHHHHHHhcccC
Confidence 999999999999999999999875
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=7.3e-21 Score=181.00 Aligned_cols=132 Identities=22% Similarity=0.243 Sum_probs=100.8
Q ss_pred EEEEEcCccceEEEEEECCCceEEeeCCCCCccceEEEEEe---cCceeecHHHHHhhhhCCCChHhhhHHhcCCCCCCH
Q psy7891 27 VMSVDLGSEWMKVAIVSPGVPMEIALNKESKRKTPTLVAFH---KGERTFGEDAQIIGTRFPSNSYGYFLDLLGKSIDSP 103 (929)
Q Consensus 27 vvGID~GTt~s~va~~~~g~~~~iv~n~~~~r~~PS~V~~~---~~~~~~G~~A~~~~~~~p~~t~~~~K~llG~~~~d~ 103 (929)
.||||||||||+|++...| ++.+ .|+.+++. +....+|..|..+...++.+.. .
T Consensus 2 ~iGIDlGTtns~va~~~~~----~v~~------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~------------ 58 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG----IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-A------------ 58 (137)
T ss_dssp EEEEEECSSEEEEEETTTE----EEEE------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-E------------
T ss_pred eEEEEcChhhEEEEEeCCC----EEee------cCCcceEecCCCeEEEEehHHhhhhhhccccce-e------------
Confidence 5899999999999875433 3333 35666663 3345577777655444333221 0
Q ss_pred HHHhhhhcCCceeeecCCCcceEEEEcCCceeeeHHHHHHHHHHHHHHHHHhhcccccceEEEEecCCCCHHHHHHHHHH
Q psy7891 104 VVQLFKSRFPYYDIVADEERGTIVFKTNDNELYHVEELVAMLLHKAREYASVSAGQVINEAVIIVPGYFNQIERQSMLKA 183 (929)
Q Consensus 104 ~v~~~~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~eel~a~~L~~lk~~a~~~~~~~v~~~VItVPa~f~~~qR~al~~A 183 (929)
.....+ ..+.+.++.++++.+++..++...+..+.++|||||++|++.||+++++|
T Consensus 59 -----------------------~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~A 114 (137)
T d1jcea1 59 -----------------------IRPMRD-GVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA 114 (137)
T ss_dssp -----------------------ECCEET-TEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred -----------------------EEeccC-CccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHH
Confidence 011111 35778889999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEechhHHHHHHh
Q psy7891 184 GELAGLKVLQLMNDYTAVALNY 205 (929)
Q Consensus 184 a~~AGl~~~~li~EptAAAl~y 205 (929)
|++|||++++||+||+||||.+
T Consensus 115 a~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 115 GLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHcCCCEEEEeCCHHHHHhCC
Confidence 9999999999999999999864
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.5e-21 Score=195.82 Aligned_cols=178 Identities=17% Similarity=0.205 Sum_probs=134.6
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
+..+|||||||||||+||++. | . +.+.+....||.+++..+..++...+.. .. ..
T Consensus 6 ~~gvlV~DiGGGT~Dvsi~~~--------g------~---~~~~~~~~~gg~~~~~~~~~~~~~~~~~--~~------~~ 60 (196)
T d1jcea2 6 PSGNMVVDIGGGTTEVAVISL--------G------S---IVTWESIRIAGDEMDEAIVQYVRETYRV--AI------GE 60 (196)
T ss_dssp SSCEEEEEECSSCEEEEEEET--------T------E---EEEEEEESCSHHHHHHHHHHHHHHHHCE--EC------CH
T ss_pred CCceEEEEcCCCcEEEEEEEc--------C------C---EeEEeeecCCCcccccchhhhhhhhhcc--cc------cc
Confidence 789999999999999999873 3 1 2223445789999999999999888754 11 11
Q ss_pred HHHHHHHHHHHHhhhh-ccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCC---CccE
Q psy7891 298 RAVAKLFKEAGRLKNV-LSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMD---VISQ 373 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~-LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~---~I~~ 373 (929)
............+... .+......+....+.++......++|.+|++++.+++.++...+.++|+.++.... .++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 140 (196)
T d1jcea2 61 RTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERG 140 (196)
T ss_dssp HHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hhHHHHHHHHhhhhhhhhccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 1112222222111111 11122334666677778888999999999999999999999999999998765321 3567
Q ss_pred EEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhhc
Q psy7891 374 VILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADLS 420 (929)
Q Consensus 374 ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~s 420 (929)
|+||||+||+|.|+++|++.||.++..+.||++|||+|||+++..+.
T Consensus 141 IvLvGGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 141 IFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp EEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred eEEeCchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 99999999999999999999999999999999999999999876554
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=8.7e-19 Score=168.40 Aligned_cols=154 Identities=21% Similarity=0.342 Sum_probs=124.1
Q ss_pred ccceeEEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcc
Q psy7891 424 KVKKFITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAM 500 (929)
Q Consensus 424 ~~k~~~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~ 500 (929)
.++++.+.|++||++||++. |+ .+.+|||||+++|++++..|++..++ +.|.||+| ++.... +|.+
T Consensus 3 ~v~~~~l~DV~p~slGie~~-----gg---~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qG-e~~~~~--~n~~ 71 (159)
T d1yuwa1 3 NVQDLLLLDVTPLSLGIETA-----GG---VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG-ERAMTK--DNNL 71 (159)
T ss_dssp CTTSSCCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEES-SSSBGG--GSEE
T ss_pred ccceEEEEEecCCceEEEEc-----CC---EEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcC-chhhcc--CccE
Confidence 47889999999999999887 33 38899999999999999999987554 89999999 877543 5544
Q ss_pred ccceeeeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEeeeEEeccccccCccccccccccccccCCCCCC
Q psy7891 501 LGTKQISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIELVVEKQEAAESPLSKLGNTLTSLFSRSKTDE 580 (929)
Q Consensus 501 ~g~~~i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 580 (929)
|+.|.|.|++++++|. +.|.|+|.+|.||+|+|++.+. .++
T Consensus 72 -----lg~f~l~~ip~~~~G~-------~~I~Vtf~id~nGil~V~A~d~---------~Tg------------------ 112 (159)
T d1yuwa1 72 -----LGKFELTGIPPAPRGV-------PQIEVTFDIDANGILNVSAVDK---------STG------------------ 112 (159)
T ss_dssp -----EEEEEEECCCCCSTTC-------CCEEEEEEECTTCCEEEEEEET---------TTC------------------
T ss_pred -----EEEEEECCCCcCCCCC-------ceEEEEEEEcCCCeEEEEEEEc---------CCC------------------
Confidence 5566899999987776 6899999999999999998741 110
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCchhhhhhhhhhhccCCCCCCCCCCCceeeeeccceeeEeecCCCCCCHHHHHHHH
Q psy7891 581 NEKPINEAVDEGNKTAEEPSKNVNSTESQQQSAEESVKNATQTPDADKKPKIVTVKEPISASETRYGVSTLNEKQVEKSL 660 (929)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~l~v~~~~~~~~~ls~~ei~~~~ 660 (929)
++.. +. .......|+.+++++++
T Consensus 113 --------------------------------------------------~~~~----i~---I~~~~~~Ls~eEIek~i 135 (159)
T d1yuwa1 113 --------------------------------------------------KENK----IT---ITNDKGRLSKEDIERMV 135 (159)
T ss_dssp --------------------------------------------------CEEE----EE---ECCCSSCSCHHHHHHHH
T ss_pred --------------------------------------------------CeEE----EE---EecCCCCCCHHHHHHHH
Confidence 0001 11 11233459999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHH
Q psy7891 661 SKLDSLNQIEHAKVRKEKALNSLE 684 (929)
Q Consensus 661 ~~l~~~~~~D~~~~~~~eakN~LE 684 (929)
++++++..+|+..+++.++||.||
T Consensus 136 ~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 136 QEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp HHHHHTTTHHHHHTTSSCSCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.9e-14 Score=122.79 Aligned_cols=77 Identities=26% Similarity=0.451 Sum_probs=71.5
Q ss_pred HHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHhchhhHHHHHHhhh
Q psy7891 679 ALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAEADVLENKLNEINSLVVPIWERHREHQ 756 (929)
Q Consensus 679 akN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~~~~~~~kl~eL~~~~~pi~~R~~e~~ 756 (929)
++|.||+|||++|+.|+++.+..++++++++.|...|+++++|||++ .++++++|.+|+++|+.++.||+.|+++..
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n-~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~ 78 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKN-QTAEKEEFEHQQKELEKVCNPIITKLYQSA 78 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 58999999999999998888999999999999999999999999964 689999999999999999999999976543
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=7.9e-14 Score=135.66 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=100.2
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
..++||||+||||||+++++- | ...+....++..+||.+|+..|++++...+.... .
T Consensus 6 ~~~ilViDiGggTtDi~v~~~--------~------~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~---------~ 62 (163)
T d2zgya2 6 LDSLLIIDLGGTTLDISQVMG--------K------LSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS---------S 62 (163)
T ss_dssp TCEEEEEEECSSCEEEEEEEG--------G------GCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG---------H
T ss_pred CCCEEEEECCCCcEEEEEEcC--------C------eEEEEEeeccccccchHHHHHHHHhhHHhhchhh---------h
Confidence 679999999999999999761 2 3445566677899999999999988865443310 0
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEE
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLv 377 (929)
.....+ + +.. ...... .........++.++.++.+.+..+...+.+.+. ...+++.|+|+
T Consensus 63 ~~~~~~---~---~~~---~~~~~~-------~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~ 122 (163)
T d2zgya2 63 YLADDI---I---IHR---KDNNYL-------KQRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVI 122 (163)
T ss_dssp HHHHHH---H---HTT---TCHHHH-------HHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEE
T ss_pred hhHHHH---H---Hhh---cccccc-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEE
Confidence 000000 0 000 000000 000111224555666666666666555555543 44689999999
Q ss_pred cCCcCCHHHHHHHHHHhCC---ccCCCCCchHHHHhhHHHHH
Q psy7891 378 GAGTRVPKVQEKITKVVGV---ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 378 GG~sriP~v~~~l~~~f~~---~i~~~~n~deaVA~GAa~~a 416 (929)
||+|+ .+++.|++.|+. .+...-||..|+|+|+.++|
T Consensus 123 GGGs~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 123 GGGAE--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp STTHH--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CchHH--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 99996 599999999982 56678899999999998876
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5e-13 Score=121.04 Aligned_cols=98 Identities=19% Similarity=0.331 Sum_probs=81.8
Q ss_pred EEEEeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhcccccee
Q psy7891 429 ITKDIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQ 505 (929)
Q Consensus 429 ~v~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~ 505 (929)
.+.|++||++||+.. ++ .+.+|++||+++|++++..|++..++ +.|.||+| +..... +|. .
T Consensus 2 ~l~DV~p~slGIe~~-----~g---~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qG-e~~~~~--~n~-----~ 65 (118)
T d1dkza2 2 LLLDVTPLSLGIETM-----GG---VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQG-ERKRAA--DNK-----S 65 (118)
T ss_dssp CCCCBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEES-SCSBGG--GSE-----E
T ss_pred EEEeecCCceeEEEc-----CC---EEEEEEeccccCCCcceEEEEcccCCCceEEEEEeee-eecccc--Cce-----E
Confidence 468999999999876 22 37899999999999999999987554 89999999 876433 454 4
Q ss_pred eeeEEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEee
Q psy7891 506 ISKFDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 549 (929)
Q Consensus 506 i~~~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e 549 (929)
|+.+.|+|+++++++. +.|.|+|++|.||+|+|++.+
T Consensus 66 lg~~~i~~ip~~p~G~-------~~I~Vtf~iD~nGiL~V~a~d 102 (118)
T d1dkza2 66 LGQFNLDGINPAPRGM-------PQIEVTFDIDADGILHVSAKD 102 (118)
T ss_dssp EEEEEEECCCSCCTTC-------SCEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCccCCCCC-------cEEEEEEEecCCCeEEEEEEE
Confidence 5667899999887766 679999999999999999986
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.6e-12 Score=117.28 Aligned_cols=95 Identities=19% Similarity=0.385 Sum_probs=79.5
Q ss_pred EeeecceEEeeeccccCCCcceeEEEEecCCCccCceEEEEEEeccCc---eEEEEEeccCcCcCChhhhccccceeeee
Q psy7891 432 DIVLYPIQVEFERESESGDTKIIKRMLFGPSNTYPQKKILTFNKYVGD---FNFNVSYASEIEHLNPEQIAMLGTKQISK 508 (929)
Q Consensus 432 d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~f~~~~~~---~~i~i~~g~~~~~~~~~~~~~~g~~~i~~ 508 (929)
|++||++||+.. |+ .+.+||+||+++|++++..|++..++ +.|.||+| +..... +|. .|+.
T Consensus 2 DV~p~slGIe~~-----gg---~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qG-e~~~~~--~N~-----~lg~ 65 (115)
T d1u00a2 2 DVIPLSLGLETM-----GG---LVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQG-ERELVQ--DCR-----SLAR 65 (115)
T ss_dssp CBCSSCEEEEET-----TT---EEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEEC-SSSBGG--GSE-----EEEE
T ss_pred CccCcceeEEEc-----CC---EEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhc-cCcccc--cce-----EeeE
Confidence 889999999876 33 37899999999999999999986443 89999999 776432 444 4566
Q ss_pred EEecCCcccccCCCccccCCCceEEEEEeCCCccEEEEEee
Q psy7891 509 FDVSGVSEAFGKHNEENAESKGIKAHFAMDESGILSLVNIE 549 (929)
Q Consensus 509 ~~i~gi~~~~~~~~~~~~~~~~i~v~f~ld~~Gil~v~~~e 549 (929)
+.+.|+++++++. +.|.|+|++|.||+|+|++.+
T Consensus 66 ~~l~~ip~~p~G~-------~~I~Vtf~id~nGiL~V~A~d 99 (115)
T d1u00a2 66 FALRGIPALPAGG-------AHIRVTFQVDADGLLSVTAME 99 (115)
T ss_dssp EEECCCCCCSTTC-------SCEEEEEEECTTCCEEEEEEE
T ss_pred EEEeCcccCcccc-------ccEEEEEEccCCceEEEEEEE
Confidence 7899999987776 689999999999999999986
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=7e-12 Score=124.92 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=110.7
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
...++|+|+|+|||+++++. .| .+.... ...+||++||..|+..+. +.
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--------~G------~l~~~~---~i~~GG~~iT~~Ia~~l~------------i~--- 53 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--------NG------VPIKIS---YVPVGMKHVIKDVSAVLD------------TS--- 53 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--------TT------EEEEEE---EESCCHHHHHHHHHHHHT------------CC---
T ss_pred hCCEEEEEeCCCcEEEEEEE--------CC------eEEEEE---EEeeChHHHHHHHHHHhc------------cc---
Confidence 45799999999999999976 24 222222 246999999999987662 11
Q ss_pred HHHHHHHHHHHHhhhhccC---CCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCC------CC
Q psy7891 298 RAVAKLFKEAGRLKNVLSA---NNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAV------PM 368 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~---~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~------~~ 368 (929)
+.+||++|+.+.. +......++....+......+++..+.+++.+.++++...+.+.++.... ..
T Consensus 54 ------~~~AE~iK~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~ 127 (191)
T d1e4ft2 54 ------FEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEI 127 (191)
T ss_dssp ------HHHHHHHHHHHCCSCCTTCCCCEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ------HHHHHHHHhhccccccccccchhcccccccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhccc
Confidence 3468999987542 11111223222223445668999999999999999998888888865321 11
Q ss_pred CCccEEEEEcCCcCCHHHHHHHHHHhCCccC--C---------------CCCchHHHHhhHHH
Q psy7891 369 DVISQVILVGAGTRVPKVQEKITKVVGVELS--K---------------NLNTDEAAALGAVY 414 (929)
Q Consensus 369 ~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~--~---------------~~n~deaVA~GAa~ 414 (929)
..+..|+|+||+|++|.+.+.+++.|+.++. . .-+|..|+|.|.+|
T Consensus 128 ~~~~~IvLtGGgs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 128 GIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp CGGGCEEEESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred ccCceEEEecchhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 2355699999999999999999999984431 1 12467788999875
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.99 E-value=5e-10 Score=107.99 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=99.1
Q ss_pred CcEEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCH
Q psy7891 218 PVHVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENP 297 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~ 297 (929)
+.++||+|+||||||++++.. | +..+ +....+....|+.+++..|++++..+|.. ... .
T Consensus 5 ~g~~lviDIG~gTtDi~v~~~--------~----~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~------~~~--~ 63 (161)
T d2fsja1 5 PGYGVVIDVGSRTTDVLTINL--------M----DMEP-VVELSFSLQIGVGDAISALSRKIAKETGF------VVP--F 63 (161)
T ss_dssp SSEEEEEEECSSCEEEEEEET--------T----TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCC------CCC--H
T ss_pred CCcEEEEEcCcCeEEEEEEEC--------C----CeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHh------hhh--H
Confidence 789999999999999999872 1 1111 11112334689999999999999887754 111 1
Q ss_pred HHHHHHHHHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEE
Q psy7891 298 RAVAKLFKEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDRVGYPVEQALKSSAVPMDVISQVILV 377 (929)
Q Consensus 298 ~~~~kL~~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLv 377 (929)
. .++.+. ... ..+. + ...--++.+.+.++++++.+...+...+.. ..+.++.|+|+
T Consensus 64 ~-------~~~~~~----~~~---~~~~----g---~~~~~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~ 119 (161)
T d2fsja1 64 D-------LAQEAL----SHP---VMFR----Q---KQVGGPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPV 119 (161)
T ss_dssp H-------HHHHHT----TSC---EEET----T---EEECSHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEE
T ss_pred H-------HHHHHH----hcc---cccc----c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEE
Confidence 1 111111 111 1111 1 111124566777777777777777766643 23579999999
Q ss_pred cCCcCCHHHHHHHHHHhCC--ccCCCCCchHHHHhhHHHHH
Q psy7891 378 GAGTRVPKVQEKITKVVGV--ELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 378 GG~sriP~v~~~l~~~f~~--~i~~~~n~deaVA~GAa~~a 416 (929)
||++++ +++.+++.|+. .+..+.||..|.|+|--..|
T Consensus 120 GGga~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 120 GGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp STTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred CCHHHH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 999987 78899999984 33455799999999976554
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.8e-09 Score=94.09 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCC
Q psy7891 651 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 730 (929)
Q Consensus 651 ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~ 730 (929)
||.++|++|++....+...|+.+|++.+++|.+|+|||+++..| +++...++++++..|...|+++..||..+ +
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l--~e~~~~l~~~~k~~i~~~i~~l~~~l~~~----d 74 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAIESALTALETALKGE----D 74 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHGGGSCHHHHHHHHHHHHHHHHHHTSS----C
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCCHHHHHHHHHHHHHHHHHHhcC----C
Confidence 78999999999999999999999999999999999999999999 45778899999999999999999999742 4
Q ss_pred HHHHHHHHHHHHhchhhHHH
Q psy7891 731 ADVLENKLNEINSLVVPIWE 750 (929)
Q Consensus 731 ~~~~~~kl~eL~~~~~pi~~ 750 (929)
...++.++.+|+..+.++..
T Consensus 75 ~~~i~~~~~~L~~~~~~l~e 94 (97)
T d1dkza1 75 KAAIEAKMQELAQVSQKLME 94 (97)
T ss_dssp HHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998764
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4.3e-09 Score=94.23 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhhccCCChhHHHHHHHHHHHHHHhhhhcCCCCC
Q psy7891 651 LNEKQVEKSLSKLDSLNQIEHAKVRKEKALNSLESLLFDAKSKLELEEYSSVAAPNESKTIVDKIDEITNWLEEDGWNAE 730 (929)
Q Consensus 651 ls~~ei~~~~~~l~~~~~~D~~~~~~~eakN~LEs~iy~~r~~L~~~~~~~~~~~~er~~l~~~l~e~~~WL~~d~~~a~ 730 (929)
||.++|++|++....+...|..+|++.+++|.+|++||.++..| ..+...++++++..|...+.++..||.++ .
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L--~e~~~~L~~~e~~~i~~~i~~l~~~l~~~----d 74 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL--AADAALLSAAERQVIDDAAAHLSEVAQGD----D 74 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHGGGSCHHHHHHHHHHHHHHHHHTTSS----C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHhhCCHHHHHHHHHHHHHHHHHHHCC----C
Confidence 78999999999999999999999999999999999999999999 45778899999999999999999999743 5
Q ss_pred HHHHHHHHHHHHhchhhHHHHHHh
Q psy7891 731 ADVLENKLNEINSLVVPIWERHRE 754 (929)
Q Consensus 731 ~~~~~~kl~eL~~~~~pi~~R~~e 754 (929)
...++..++.|...+.|+..|.++
T Consensus 75 ~~~I~~~~~~L~~~~~~~a~~~m~ 98 (112)
T d1u00a1 75 VDAIEQAIKNVDKQTQDFAARRMD 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998876654
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.54 E-value=3e-06 Score=86.81 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=54.2
Q ss_pred HHHHHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHHHHHHhh
Q psy7891 345 LNEDLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAVYKAADL 419 (929)
Q Consensus 345 l~~~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa~~aa~~ 419 (929)
++...+..+...+...+... .+.+.|++.||.++.+.+++.+++.++.++..+.+++++.|+|||++|..-
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 33344444444444444432 245679999999999999999999999889899999999999999999753
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=6.4e-05 Score=77.09 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=97.2
Q ss_pred EEEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccC--CH
Q psy7891 220 HVMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFE--NP 297 (929)
Q Consensus 220 ~vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~--~~ 297 (929)
+=||+|+|++.|+|+-|. .| +-+....-...+||.+++..|.++|.++-. ++.. +.
T Consensus 4 TGlVVDiG~~~T~v~PV~--------eG-------~~l~~~~~~~~~GG~~lt~~L~~~L~~~~~-------~~~~~~~~ 61 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--------EG-------YVIGSCIKHIPIAGRDITYFIQQLLRDREV-------GIPPEQSL 61 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--------TT-------EECGGGCEEESCSHHHHHHHHHHHHHTTCC-------CCCGGGHH
T ss_pred EEEEEEcCCCcEEEEEEE--------CC-------EEchhheEEEeCcHHHHHHHHHHHHHHcCC-------CCCcHHHH
Confidence 349999999999998775 25 111111122469999999999988864211 1110 11
Q ss_pred HHHHHHH-----------HHHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHH---HHHH------HHhHHHHHH
Q psy7891 298 RAVAKLF-----------KEAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEA---LNED------LFDRVGYPV 357 (929)
Q Consensus 298 ~~~~kL~-----------~~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~---l~~~------l~~~i~~~i 357 (929)
.....+. .+.++....-+ ........+.........+.+..+.|.- ++.| ....+.+.|
T Consensus 62 ~~~~~~ke~~~~v~~d~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i 140 (258)
T d1k8ka2 62 ETAKAVKERYSYVCPDLVKEFNKYDTDGS-KWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVV 140 (258)
T ss_dssp HHHHHHHHHHCCCCSCHHHHHHHHHHSGG-GTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHH
T ss_pred HHHHhHHhhhcccccchHHHHHhhccccc-ccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHH
Confidence 1110000 11111111111 1111233433333445567777776631 2221 112477888
Q ss_pred HHHHHHcCCCCC--CccEEEEEcCCcCCHHHHHHHHHHhCC------------------------ccCCCCCchHHHHhh
Q psy7891 358 EQALKSSAVPMD--VISQVILVGAGTRVPKVQEKITKVVGV------------------------ELSKNLNTDEAAALG 411 (929)
Q Consensus 358 ~~~L~~a~~~~~--~I~~ViLvGG~sriP~v~~~l~~~f~~------------------------~i~~~~n~deaVA~G 411 (929)
.+++..+..+.. -...|+|+||+|.+|.+.++|.+.+.. .+..+.++..++=+|
T Consensus 141 ~~si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~G 220 (258)
T d1k8ka2 141 DEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFG 220 (258)
T ss_dssp HHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHH
T ss_pred HHHHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHH
Confidence 888887754332 256799999999999999888655520 112223455688889
Q ss_pred HHHHHH
Q psy7891 412 AVYKAA 417 (929)
Q Consensus 412 Aa~~aa 417 (929)
|+++|.
T Consensus 221 gsila~ 226 (258)
T d1k8ka2 221 GSMLAS 226 (258)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 988875
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.50 E-value=6.4e-05 Score=75.42 Aligned_cols=169 Identities=14% Similarity=0.153 Sum_probs=94.6
Q ss_pred EEEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHH
Q psy7891 221 VMFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAV 300 (929)
Q Consensus 221 vlv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~ 300 (929)
=||+|+|++.|.|+-|. .| +-+....-...+||++++..|.++|...... .. .+...
T Consensus 4 glVVDiG~~~t~v~PV~--------eG-------~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~-------~~-~~~~~ 60 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--------EG-------YALPHAIMRLDLAGRDLTDYLMKILTERGYS-------FV-TTAER 60 (225)
T ss_dssp EEEEEECSSCEEEEEEE--------TT-------EECGGGCEEESCCHHHHHHHHHHHHHHHTCC-------CC-SHHHH
T ss_pred EEEEEcCCCcEEEEEEE--------CC-------EEchhceEEEECcHHHHHHHHHHHHhhccCC-------cC-CHHHH
Confidence 48999999999998775 25 1111111224699999999999888654321 11 11111
Q ss_pred H---HHHH---------HHHHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHh---------HHHHHHHH
Q psy7891 301 A---KLFK---------EAGRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFD---------RVGYPVEQ 359 (929)
Q Consensus 301 ~---kL~~---------~aek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~---------~i~~~i~~ 359 (929)
. .+.. ..+..+...+........ +-++ -.+.+..+.|. +.+.+|+ .+.++|.+
T Consensus 61 ~~~~~~ke~~~~~~~d~~~e~~~~~~~~~~~~~~~---lpdg--~~i~i~~er~~-~~E~lF~p~~~~~~~~gl~~~i~~ 134 (225)
T d2fxua2 61 EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE---LPDG--QVITIGNERFR-CPETLFQPSFIGMESAGIHETTYN 134 (225)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE---CTTS--CEEEESTHHHH-HHHTTTCGGGGTCCSCCHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHhhcccCcccceeEE---CCCC--CEEEEchHhcc-ccHhhcCccccCCccCChhHHHHH
Confidence 1 1110 011111111121121222 2222 34556655442 2233332 36777777
Q ss_pred HHHHcCCC--CCCccEEEEEcCCcCCHHHHHHHHHHhC--------CccCCCCCchHHHHhhHHHHHHh
Q psy7891 360 ALKSSAVP--MDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAAD 418 (929)
Q Consensus 360 ~L~~a~~~--~~~I~~ViLvGG~sriP~v~~~l~~~f~--------~~i~~~~n~deaVA~GAa~~aa~ 418 (929)
++..+..+ ..-...|+|+||+|++|.+.++|...+. .++..+.++..++=+||+++|..
T Consensus 135 sI~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 135 SIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred HhhcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 77755321 1124589999999999999999887652 13334446667889999998863
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.23 E-value=0.0012 Score=60.49 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCCccEEEEEcCCcCCHHHHHHHHHHhC--------CccCCCCCchHHHHhhHHHH
Q psy7891 367 PMDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYK 415 (929)
Q Consensus 367 ~~~~I~~ViLvGG~sriP~v~~~l~~~f~--------~~i~~~~n~deaVA~GAa~~ 415 (929)
+..+|..|+|+|||+.=.-|-+++.+.+. ..+.-..-|.-|||.|.++.
T Consensus 142 nir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 142 SIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 45689999999999987777777777663 24555566888999998764
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.21 E-value=0.00027 Score=68.66 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=81.8
Q ss_pred EEEEcCCceEEEEEEEEEeeccccCCcccCCCcEEEEEEecCCCcchHHHHHHHHHHHHHHhhhhcccCCCccCCHHHHH
Q psy7891 222 MFYDMGAWSTTVSIVSYQVVKTKERGFVETHPQVSVLGVGYDRTLGGLEMQIRLRDFLGKKFNEMKKTTKDVFENPRAVA 301 (929)
Q Consensus 222 lv~D~GggT~dvsvv~~~~~~~~~~G~~~~~~~~~v~~~~~d~~lGG~~~D~~l~~~l~~~f~~~~~~~~d~~~~~~~~~ 301 (929)
||+|+|++.|.|+-|. .| +-+....-...+||++++..|.+.+.+.-.. ...........
T Consensus 2 lVVDiG~~~T~v~PV~--------dG-------~~l~~a~~~~~igG~~lt~~l~~~l~~~~~~-----~~~~~~~~~~~ 61 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--------EG-------FSLPHLTRRLDIAGRDITRYLIKLLLLRGYA-----FNHSADFETVR 61 (190)
T ss_dssp CEEEECSSCEEEECEE--------TT-------EECSTTCEEESCCHHHHHHHHHHHHHHTTCC-----CCTTTTHHHHH
T ss_pred EEEEcCCCcEEEEEeE--------CC-------EEcccceEEEeccHHHHHHHHHHHHHhcCCc-----ccchHHHHHHH
Confidence 6999999999988664 25 1111111224699999999988887643211 01111111111
Q ss_pred HHHHHH---------HHhhhhccCCCceeEEEeecccCcceEEEEeHHHHHHHHHHHHhH---------HHHHHHHHHHH
Q psy7891 302 KLFKEA---------GRLKNVLSANNEHFAQIEGLIDEIDFKLLVTRAEFEALNEDLFDR---------VGYPVEQALKS 363 (929)
Q Consensus 302 kL~~~a---------ek~K~~LS~~~~~~v~ie~l~~~~d~~~~itR~efe~l~~~l~~~---------i~~~i~~~L~~ 363 (929)
.+...+ +..+...+........ +.++ ..+.+..+.|. +.+.+|+. +..+|.+++..
T Consensus 62 ~i~~~~~~v~~~~~~e~~~~~~~~~~~~~~~---lpdg--~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~ 135 (190)
T d1k8kb1 62 MIKEKLCYVGYNIEQEQKLALETTVLVESYT---LPDG--RIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQA 135 (190)
T ss_dssp HHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE---CTTS--CEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHH
T ss_pred HHHhhhhhhcccHHHHHHhhhcccceeeeee---cCCC--cEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHh
Confidence 111110 1111111222211112 2222 34567776664 33444443 77888888888
Q ss_pred cCCCC--CCccEEEEEcCCcCCHHHHHHHHHHh
Q psy7891 364 SAVPM--DVISQVILVGAGTRVPKVQEKITKVV 394 (929)
Q Consensus 364 a~~~~--~~I~~ViLvGG~sriP~v~~~l~~~f 394 (929)
+..+. .-...|+|+||+|.+|.+.++|...+
T Consensus 136 c~~d~r~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 136 ADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp SCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred CCHhHHHHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 75432 22567999999999999999997765
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.19 E-value=0.0012 Score=60.32 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred HHHHHHHc--CCCCCCccEEEEEcCCcCCHHHHHHHHHHhC--------CccCCCCCchHHHHhhHHHHHH
Q psy7891 357 VEQALKSS--AVPMDVISQVILVGAGTRVPKVQEKITKVVG--------VELSKNLNTDEAAALGAVYKAA 417 (929)
Q Consensus 357 i~~~L~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~--------~~i~~~~n~deaVA~GAa~~aa 417 (929)
+.++|+.- +-...+|..|+|+|||+.=.-|-+++.+.+. ..+.-..-|.-|||.|.++.-+
T Consensus 130 a~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y~ 200 (203)
T d2d0oa3 130 ALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWH 200 (203)
T ss_dssp HHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHhh
Confidence 33455542 3455689999999999998888888888874 1444455688899999986543
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.22 E-value=0.0086 Score=49.23 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcceeHHHHHHHHH
Q psy7891 763 KSLNNALNVSVTFYNSIKNLSLNTNETEDLNLFSDIELKSLDTLINETKVWKEKSEKEQNQLKKSDPIVLTIRSIVEKIR 842 (929)
Q Consensus 763 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~ 842 (929)
..|...|-.++..+.. +.+ ...+++++++.|.+.|+++..||++... -+..+++.|.+
T Consensus 4 N~LEsyiy~~r~~l~d-----~~~-----~~kl~~~dk~~i~~~l~e~~~WL~~n~~------------a~~ee~~~k~~ 61 (84)
T d1ud0a_ 4 HMLESYAFNMKATVED-----EKL-----QGKINDEDKQKILDKCNEIISWLDKNQT------------AEKEEFEHQQK 61 (84)
T ss_dssp HHHHHHHHHHHHHHTS-----GGG-----TTTSCHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTH
T ss_pred hhHHHHHHHHHHHhcc-----hhh-----ccccCHHHHHHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHH
Confidence 4556666666654432 112 2579999999999999999999987432 23578999999
Q ss_pred HHHHHHHHHHhccc
Q psy7891 843 ALEREVRYLENKSK 856 (929)
Q Consensus 843 ~l~~~~~~i~~k~k 856 (929)
+|+..|++|+.|+-
T Consensus 62 eLe~~~~PI~~k~y 75 (84)
T d1ud0a_ 62 ELEKVCNPIITKLY 75 (84)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=95.81 E-value=0.0066 Score=60.51 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=60.2
Q ss_pred EEEeHHHHHHHHH-HHHhHHHHHHHHHHHHcCCCCCCccEEEEEcCCcCCHHHHHHHHHHhCCccCCCCCchHHHHhhHH
Q psy7891 335 LLVTRAEFEALNE-DLFDRVGYPVEQALKSSAVPMDVISQVILVGAGTRVPKVQEKITKVVGVELSKNLNTDEAAALGAV 413 (929)
Q Consensus 335 ~~itR~efe~l~~-~l~~~i~~~i~~~L~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f~~~i~~~~n~deaVA~GAa 413 (929)
..-+|.++-+.+- .+.-.+...++..-+..+. .++.|.+.||+++.+.+.+++.+.+|.++....+. |+.++|||
T Consensus 114 ~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA 189 (235)
T d1r59o2 114 RGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAA 189 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHH
Confidence 3446777655443 3333444444433334565 46789999999999999999999999877665544 58999999
Q ss_pred HHHHhhcCCc
Q psy7891 414 YKAADLSTGF 423 (929)
Q Consensus 414 ~~aa~~s~~f 423 (929)
+.|+.-.+.+
T Consensus 190 ~la~~~~G~~ 199 (235)
T d1r59o2 190 YLAGLAVGFW 199 (235)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHcCCC
Confidence 9999877654
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.72 E-value=0.027 Score=50.89 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhcccc--cceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhc
Q psy7891 140 ELVAMLLHKAREYASVSAGQV--INEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYG 206 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~~~--v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~ 206 (929)
+....++.|+.. ..++.. -..++||-|.+-....|+.+.+.+ +..++.-+.+...+..+++++|
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 455566666654 233322 245999999999999999888776 6779999999999999987764
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.27 E-value=0.055 Score=49.94 Aligned_cols=66 Identities=8% Similarity=-0.098 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhcc--cccceEEEEecCCCCHHHHHHHHHHH-HHcCCcEEEEechhHHHHHHhccc
Q psy7891 140 ELVAMLLHKAREYASVSAG--QVINEAVIIVPGYFNQIERQSMLKAG-ELAGLKVLQLMNDYTAVALNYGIF 208 (929)
Q Consensus 140 el~a~~L~~lk~~a~~~~~--~~v~~~VItVPa~f~~~qR~al~~Aa-~~AGl~~~~li~EptAAAl~y~~~ 208 (929)
+.+..++.++.. ..++ ..-..++||-|.+.+..+|+.+.+.+ +..++.-+.+...+..++++++..
T Consensus 85 d~~e~l~~~~~~---~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 85 DLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp HHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHH---HhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 444555555432 2232 23356999999999999999877766 667899889999999888877754
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.2 Score=48.40 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=34.1
Q ss_pred CccEEEEEcCCcCCHHHHHHHHH----HhC---CccCCCCCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAGTRVPKVQEKITK----VVG---VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~sriP~v~~~l~~----~f~---~~i~~~~n~deaVA~GAa~~a 416 (929)
.++.|+++||.+..-.+++.+.+ ++. .++....|...+.|+||.+.-
T Consensus 157 ~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 157 NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 46789999998776666655543 443 355667788899999998764
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=89.10 E-value=1.6 Score=36.80 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=42.2
Q ss_pred eHHHHHHHHHHHHHHHHHhhc-c-ccc--ceEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEechhHHHHHH
Q psy7891 137 HVEELVAMLLHKAREYASVSA-G-QVI--NEAVIIVPGYFNQIERQSMLKAGELAGLKVLQLMNDYTAVALN 204 (929)
Q Consensus 137 ~~eel~a~~L~~lk~~a~~~~-~-~~v--~~~VItVPa~f~~~qR~al~~Aa~~AGl~~~~li~EptAAAl~ 204 (929)
.+++++..+...+.+..+... . ..+ ..+.+.+|.......+..+.... -.+..+.+.|+..||++.
T Consensus 41 ~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 41 GIAKSWQAVLSTLEAAFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCChhhhceeEEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 456677777776666554421 1 122 23567888887777766665432 244577899999999876
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.63 E-value=0.11 Score=48.00 Aligned_cols=41 Identities=20% Similarity=-0.044 Sum_probs=28.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHc--------CC------cEEEEechhHHHHH
Q psy7891 163 EAVIIVPGYFNQIERQSMLKAGELA--------GL------KVLQLMNDYTAVAL 203 (929)
Q Consensus 163 ~~VItVPa~f~~~qR~al~~Aa~~A--------Gl------~~~~li~EptAAAl 203 (929)
.+|+..|..+...+++++.+....- |- ..+.++.||.+|.+
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~ 157 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAAL 157 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHH
Confidence 3678899998888999998876421 11 23456788887665
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=88.31 E-value=0.58 Score=44.10 Aligned_cols=32 Identities=9% Similarity=-0.117 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEechhHHHHHHh
Q psy7891 174 QIERQSMLKAGELAGLKVLQLMNDYTAVALNY 205 (929)
Q Consensus 174 ~~qR~al~~Aa~~AGl~~~~li~EptAAAl~y 205 (929)
...-+.+..+.+.+|+++..++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 56778888999999999999999999999653
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=87.70 E-value=0.43 Score=46.74 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=38.5
Q ss_pred CccEEEEEcCC-cCCHHHHHHHHHHhC---CccCCCCCchHHHHhhHHHHH
Q psy7891 370 VISQVILVGAG-TRVPKVQEKITKVVG---VELSKNLNTDEAAALGAVYKA 416 (929)
Q Consensus 370 ~I~~ViLvGG~-sriP~v~~~l~~~f~---~~i~~~~n~deaVA~GAa~~a 416 (929)
++..|++.||. +..|.+++.|++++. .++....+++.+-|+|||+.+
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 44689999986 669999999999985 466677889999999998764
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=82.13 E-value=0.69 Score=43.05 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=17.9
Q ss_pred CcEEEEEEcCCceEEEEEEE
Q psy7891 218 PVHVMFYDMGAWSTTVSIVS 237 (929)
Q Consensus 218 ~~~vlv~D~GggT~dvsvv~ 237 (929)
...+||+|+|||||.+++++
T Consensus 2 e~~~lviDIGGGStEli~~~ 21 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK 21 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEeCCChHhhEEee
Confidence 46899999999999999876
|