Psyllid ID: psy7892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MRSDESSLYVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIRY
ccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcc
MRSDESSLYVSALEdlnltnsnnkkaesqnsRKTVLKSKQTTVSEKKEKSLIEHFDKEiqledklevtgppsdvddfdketwedplqvSCYAMHIFEYLKSREAEfqikdylpfqsstekgninAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIfvsskfddrippqlsdleyicsHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIRY
MRSDESSLYVSALedlnltnsnnkkaesqnsrktvlkskqttvsekkeksliehfdkeiqledklevtgppsdVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLpfqsstekgnINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAigfdlgiplsyrflrryariry
MRSDESSLYVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIRY
******************************************************************************KETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARI**
************************************************************************DVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR*
*********VSALEDLNLTNSN**************************KSLIEHFDKEIQLEDKLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIRY
***********************************************************************SDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSDESSLYVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
Q9I7I0 575 G2/mitotic-specific cycli yes N/A 0.937 0.391 0.497 1e-56
P39963 403 G2/mitotic-specific cycli yes N/A 0.662 0.394 0.512 3e-43
Q659K0 1330 G2/mitotic-specific cycli yes N/A 0.666 0.120 0.475 1e-40
Q8WWL7 1395 G2/mitotic-specific cycli yes N/A 0.691 0.118 0.451 1e-38
Q810T2 1396 G2/mitotic-specific cycli yes N/A 0.862 0.148 0.353 3e-38
Q10654 385 G2/mitotic-specific cycli yes N/A 0.658 0.410 0.445 7e-36
P51987 392 G2/mitotic-specific cycli N/A N/A 0.745 0.456 0.360 1e-27
Q9DGA0 401 G2/mitotic-specific cycli N/A N/A 0.9 0.538 0.309 1e-27
Q9DG97 401 G2/mitotic-specific cycli N/A N/A 0.879 0.526 0.3 1e-27
P15206 388 G2/mitotic-specific cycli N/A N/A 0.908 0.561 0.295 2e-27
>sp|Q9I7I0|CCNB3_DROME G2/mitotic-specific cyclin-B3 OS=Drosophila melanogaster GN=CycB3 PE=1 SV=1 Back     alignment and function desciption
 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/233 (49%), Positives = 154/233 (66%), Gaps = 8/233 (3%)

Query: 5   ESSLYVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDK 64
           E SLY+SALED++  +S       + +R+   K +Q T  E++ + L+     E      
Sbjct: 222 EDSLYMSALEDVSSCDSMRLSGNFEAARRRSAKLQQKT--EQQPQPLLLTL-PETAPSQV 278

Query: 65  LEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNIN 124
           + +   P +V+DFD++ W+DP QVS YAM IF YLK REAEF I DY+P Q      ++ 
Sbjct: 279 VPIPPVPEEVEDFDRKNWDDPFQVSHYAMDIFNYLKVREAEFPIADYMPRQI-----HLT 333

Query: 125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 184
             MR++LVDWMVEVQETFELNHETLYLAVK+VDLYL + V ++  LQLLGA A F++ K+
Sbjct: 334 TWMRTLLVDWMVEVQETFELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKY 393

Query: 185 DDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
           D+R PP + D  YIC   Y+  +L  ME + +  I +DLGIPLSYRFLRRYAR
Sbjct: 394 DERQPPLIEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYAR 446
Cyclins are positive regulatory subunits of the cyclin-dependent kinases (CDKs), and thereby play an essential role in the control of the cell cycle, notably via their destruction during cell division. Probably functions redundantly with other cyclins in regulation of cell cycle. Its presence may be required to delay a deadline for completing cytokinesis that is ordinary imposed by nuclear envelope reformation. Degradation of CycB and CycB3 promote cytokinesis furrow initiation and ingression. Required with CycB for female fertility.
Drosophila melanogaster (taxid: 7227)
>sp|P39963|CCNB3_CHICK G2/mitotic-specific cyclin-B3 OS=Gallus gallus GN=CCNB3 PE=2 SV=1 Back     alignment and function description
>sp|Q659K0|CCNB3_CANFA G2/mitotic-specific cyclin-B3 OS=Canis familiaris GN=CCNB3 PE=2 SV=1 Back     alignment and function description
>sp|Q8WWL7|CCNB3_HUMAN G2/mitotic-specific cyclin-B3 OS=Homo sapiens GN=CCNB3 PE=1 SV=2 Back     alignment and function description
>sp|Q810T2|CCNB3_MOUSE G2/mitotic-specific cyclin-B3 OS=Mus musculus GN=Ccnb3 PE=2 SV=2 Back     alignment and function description
>sp|Q10654|CCNB3_CAEEL G2/mitotic-specific cyclin-B3 OS=Caenorhabditis elegans GN=cyb-3 PE=2 SV=3 Back     alignment and function description
>sp|P51987|CCNB_HYDVD G2/mitotic-specific cyclin-B OS=Hydra viridissima PE=2 SV=1 Back     alignment and function description
>sp|Q9DGA0|CCNB1_ORYJA G2/mitotic-specific cyclin-B1 OS=Oryzias javanicus GN=ccnb1 PE=2 SV=2 Back     alignment and function description
>sp|Q9DG97|CCNB1_ORYLU G2/mitotic-specific cyclin-B1 OS=Oryzias luzonensis GN=ccnb1 PE=2 SV=1 Back     alignment and function description
>sp|P15206|CCNB_MARGL G2/mitotic-specific cyclin-B OS=Marthasterias glacialis PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
195112969 575 GI22195 [Drosophila mojavensis] gi|19391 0.937 0.391 0.506 4e-57
195055027 589 GH16367 [Drosophila grimshawi] gi|193892 0.937 0.382 0.506 6e-57
340721037 506 PREDICTED: LOW QUALITY PROTEIN: g2/mitot 0.954 0.452 0.508 6e-56
194742848 570 GF18004 [Drosophila ananassae] gi|190626 0.920 0.387 0.497 1e-55
332018667 474 G2/mitotic-specific cyclin-B3 [Acromyrme 0.941 0.476 0.493 4e-55
195573637 575 GD18256 [Drosophila simulans] gi|1942007 0.937 0.391 0.497 4e-55
4033971 575 cyclin B3 [Drosophila melanogaster] 0.937 0.391 0.497 7e-55
24649824 575 cyclin B3, isoform A [Drosophila melanog 0.937 0.391 0.497 8e-55
4033981 575 cyclin B3 [Drosophila melanogaster] 0.937 0.391 0.497 8e-55
322786680 471 hypothetical protein SINV_11506 [Solenop 0.95 0.484 0.508 1e-54
>gi|195112969|ref|XP_002001044.1| GI22195 [Drosophila mojavensis] gi|193917638|gb|EDW16505.1| GI22195 [Drosophila mojavensis] Back     alignment and taxonomy information
 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 120/237 (50%), Positives = 159/237 (67%), Gaps = 12/237 (5%)

Query: 5   ESSLYVSALEDLNLTNS----NNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQ 60
           E SLY+SALED++  +S     N +A  + S K  LK++Q   +  +E+S++        
Sbjct: 217 EESLYMSALEDISSCDSMRLSGNFEAARRLSAKLQLKTEQPKPATVQEQSVLTEAASAAV 276

Query: 61  LEDKLEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEK 120
           +     VT  P DV+DFD++ W+DP QVS YA  IF YLK+RE EF I DY+P Q     
Sbjct: 277 VR---PVTPVPDDVEDFDRKNWDDPFQVSNYARDIFNYLKTREPEFPITDYMPKQI---- 329

Query: 121 GNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFV 180
            ++   MR++LVDWMVEVQETFELNHETLYLAVK+VDLYL +VV ++  LQLLGA A F+
Sbjct: 330 -HLTTWMRTLLVDWMVEVQETFELNHETLYLAVKIVDLYLCRVVINKEKLQLLGAAAFFI 388

Query: 181 SSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
           + K+D+R PP + D  YIC   Y+  +L  ME++ +  I +DLGIPLSYRFLRRYAR
Sbjct: 389 ACKYDERQPPLIEDFLYICDGAYNHDELVKMEMETLRTINYDLGIPLSYRFLRRYAR 445

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195055027|ref|XP_001994424.1| GH16367 [Drosophila grimshawi] gi|193892187|gb|EDV91053.1| GH16367 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|340721037|ref|XP_003398933.1| PREDICTED: LOW QUALITY PROTEIN: g2/mitotic-specific cyclin-B3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|194742848|ref|XP_001953912.1| GF18004 [Drosophila ananassae] gi|190626949|gb|EDV42473.1| GF18004 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|332018667|gb|EGI59239.1| G2/mitotic-specific cyclin-B3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195573637|ref|XP_002104798.1| GD18256 [Drosophila simulans] gi|194200725|gb|EDX14301.1| GD18256 [Drosophila simulans] Back     alignment and taxonomy information
>gi|4033971|emb|CAA07237.1| cyclin B3 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|24649824|ref|NP_651303.2| cyclin B3, isoform A [Drosophila melanogaster] gi|442620983|ref|NP_001262934.1| cyclin B3, isoform B [Drosophila melanogaster] gi|48428161|sp|Q9I7I0.1|CCNB3_DROME RecName: Full=G2/mitotic-specific cyclin-B3 gi|10726757|gb|AAG22169.1| cyclin B3, isoform A [Drosophila melanogaster] gi|27819783|gb|AAO24940.1| RE64430p [Drosophila melanogaster] gi|220948724|gb|ACL86905.1| CycB3-PA [synthetic construct] gi|440217862|gb|AGB96314.1| cyclin B3, isoform B [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|4033981|emb|CAA10059.1| cyclin B3 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|322786680|gb|EFZ13064.1| hypothetical protein SINV_11506 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
FB|FBgn0015625 575 CycB3 "Cyclin B3" [Drosophila 0.937 0.391 0.497 2.1e-52
UNIPROTKB|P39963 403 CCNB3 "G2/mitotic-specific cyc 0.662 0.394 0.512 2.6e-40
UNIPROTKB|F1RW20 1338 CCNB3 "Uncharacterized protein 0.658 0.118 0.493 6.2e-39
UNIPROTKB|K7GMP0 329 CCNB3 "Uncharacterized protein 0.658 0.480 0.493 7.8e-39
ZFIN|ZDB-GENE-060929-684 401 ccnb3 "cyclin B3" [Danio rerio 0.904 0.541 0.415 4.3e-38
UNIPROTKB|Q8WWL7 1395 CCNB3 "G2/mitotic-specific cyc 0.791 0.136 0.429 2.9e-36
UNIPROTKB|Q659K0 1330 CCNB3 "G2/mitotic-specific cyc 0.833 0.150 0.431 5.6e-36
UNIPROTKB|G3N0U2 1276 Bt.83346 "Uncharacterized prot 0.620 0.116 0.474 1.7e-35
UNIPROTKB|F1PYY2 1330 CCNB3 "G2/mitotic-specific cyc 0.833 0.150 0.426 2.4e-35
MGI|MGI:2183443 1396 Ccnb3 "cyclin B3" [Mus musculu 0.945 0.162 0.358 1.2e-34
FB|FBgn0015625 CycB3 "Cyclin B3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/233 (49%), Positives = 154/233 (66%)

Query:     5 ESSLYVSALEDLNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDK 64
             E SLY+SALED++  +S       + +R+   K +Q T  E++ + L+     E      
Sbjct:   222 EDSLYMSALEDVSSCDSMRLSGNFEAARRRSAKLQQKT--EQQPQPLLLTLP-ETAPSQV 278

Query:    65 LEVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNIN 124
             + +   P +V+DFD++ W+DP QVS YAM IF YLK REAEF I DY+P Q      ++ 
Sbjct:   279 VPIPPVPEEVEDFDRKNWDDPFQVSHYAMDIFNYLKVREAEFPIADYMPRQI-----HLT 333

Query:   125 AEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKF 184
               MR++LVDWMVEVQETFELNHETLYLAVK+VDLYL + V ++  LQLLGA A F++ K+
Sbjct:   334 TWMRTLLVDWMVEVQETFELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKY 393

Query:   185 DDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
             D+R PP + D  YIC   Y+  +L  ME + +  I +DLGIPLSYRFLRRYAR
Sbjct:   394 DERQPPLIEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYAR 446
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0007067 "mitosis" evidence=IDA
GO:0000281 "cytokinesis after mitosis" evidence=IMP;IDA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA
GO:0035186 "syncytial blastoderm mitotic cell cycle" evidence=IGI
GO:0035561 "regulation of chromatin binding" evidence=IGI
UNIPROTKB|P39963 CCNB3 "G2/mitotic-specific cyclin-B3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW20 CCNB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GMP0 CCNB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-684 ccnb3 "cyclin B3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWL7 CCNB3 "G2/mitotic-specific cyclin-B3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q659K0 CCNB3 "G2/mitotic-specific cyclin-B3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3N0U2 Bt.83346 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYY2 CCNB3 "G2/mitotic-specific cyclin-B3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2183443 Ccnb3 "cyclin B3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FMH5CCA31_ARATHNo assigned EC number0.32740.91660.6197yesN/A
P39963CCNB3_CHICKNo assigned EC number0.51210.66250.3945yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-38
COG5024 440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-29
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-17
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-15
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  129 bits (326), Expect = 3e-38
 Identities = 49/131 (37%), Positives = 81/131 (61%), Gaps = 6/131 (4%)

Query: 95  IFEYLKSREAEFQI-KDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAV 153
           I+ YL+  E E +   DYL  Q      +IN +MR++L+DW+VEV E F+L  ETLYLAV
Sbjct: 2   IYAYLRELEEEDRPPPDYLDQQ-----PDINPKMRAILIDWLVEVHEEFKLLPETLYLAV 56

Query: 154 KLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEI 213
             +D +L K    R  LQL+G T + +++K+++  PP + D  YI  + Y+ +++  ME+
Sbjct: 57  NYLDRFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMEL 116

Query: 214 KLVTAIGFDLG 224
            +++ + +DL 
Sbjct: 117 LILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
KOG0653|consensus 391 100.0
COG5024 440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0655|consensus 408 100.0
KOG0656|consensus 335 99.96
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.95
KOG0654|consensus 359 99.92
TIGR00569 305 ccl1 cyclin ccl1. University). 99.67
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.6
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.53
KOG0834|consensus 323 99.48
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.31
KOG0835|consensus 367 99.05
KOG0794|consensus264 98.85
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.83
PRK00423310 tfb transcription initiation factor IIB; Reviewed 98.49
KOG2496|consensus 325 98.23
KOG4164|consensus497 97.71
KOG1597|consensus308 97.02
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 96.84
KOG1674|consensus218 96.7
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.22
KOG1675|consensus343 96.02
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.38
KOG0834|consensus323 90.92
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 90.78
>KOG0653|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-38  Score=298.07  Aligned_cols=162  Identities=40%  Similarity=0.667  Sum_probs=153.1

Q ss_pred             CCCCCCCCCCCCccchhhhHHHHHHHHHHHHhhCCCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy7892          73 DVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLA  152 (240)
Q Consensus        73 ~v~~~d~~~~~dp~~~~eY~~dI~~~L~~~E~~~~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lA  152 (240)
                      .+.|+|..++.+|+++.+|+.+||.|++.+|..+.+..|+..|.     +++..||.+++|||++||.+|+|.+||+|+|
T Consensus       108 ~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~-----e~~~~mR~iLvdwlvevh~~F~L~~ETL~La  182 (391)
T KOG0653|consen  108 SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQS-----EIRAKMRAILVDWLVEVHEKFGLSPETLYLA  182 (391)
T ss_pred             CccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccc-----cccHHHHHHHHHHHHHhhhhcCcCHHHHHHH
Confidence            48999999999999999999999999999994444445556677     9999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCccchhhhhhccc-cccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHH
Q psy7892         153 VKLVDLYLGKVVCSRLNLQLLGATAIF-VSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRF  231 (240)
Q Consensus       153 V~ilDRyLs~~~v~~~~lqLvg~tcL~-IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~F  231 (240)
                      |+++||||++..|++.++||+|++||| ||+||||..+|.++||+++++++||+++|++||+.||++|+|+++.|+|+.|
T Consensus       183 VnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~F  262 (391)
T KOG0653|consen  183 VNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSF  262 (391)
T ss_pred             HHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHH
Confidence            999999999999999999999999966 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q psy7892         232 LRRYARIR  239 (240)
Q Consensus       232 L~~f~k~a  239 (240)
                      |++|++++
T Consensus       263 Lrr~~ka~  270 (391)
T KOG0653|consen  263 LRRFLKAA  270 (391)
T ss_pred             HHHHHHhh
Confidence            99999986

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2b9r_A 269 Crystal Structure Of Human Cyclin B1 Length = 269 6e-25
2jgz_B 260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-24
3qhr_B 261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 3e-20
4i3z_B 257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 5e-20
4ii5_B 258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 5e-20
3dog_B 264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-20
3ddq_B 269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-20
3ddp_B 268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-20
3bht_B 262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-20
1ogu_B 260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 7e-20
2g9x_B 262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 8e-20
1vin_A 268 Bovine Cyclin A3 Length = 268 8e-20
4bcq_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-20
4bcq_D 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 9e-20
4bco_B 262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-19
2x1n_B 261 Truncation And Optimisation Of Peptide Inhibitors O 1e-19
1fin_B 260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 1e-19
1qmz_B 259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-19
1vyw_B 265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 1e-19
1jst_B 258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 1e-19
3f5x_B 256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 1e-19
1e9h_B 261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 2e-19
1w98_B 283 The Structural Basis Of Cdk2 Activation By Cyclin E 7e-12
3g33_B 306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 4e-10
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 1e-07
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 2e-07
2w96_A 271 Crystal Structure Of Cdk4 In Complex With A D-Type 9e-07
2w9z_A 257 Crystal Structure Of Cdk4 In Complex With A D-Type 9e-07
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
Query: 89  SCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 147
           S Y   I+ YL+  EA   ++  YL  +  T  GN    MR++L+DW+V+VQ  F L  E
Sbjct: 4   SEYVKDIYAYLRQLEAAQAVRPKYLLGREVT--GN----MRAILIDWLVQVQMKFRLLQE 57
Query: 148 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 207
           T+Y+ V ++D ++      +  LQL+G TA+F++SK+++  PP++ D  ++  +TY+   
Sbjct: 58  TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 208 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARI 238
           ++ ME+K++ A+ F LG PL   FLRR ++I
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKI 148
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-58
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 6e-58
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 9e-58
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 3e-57
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 9e-53
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 8e-52
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 6e-51
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-48
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-04
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  184 bits (470), Expect = 2e-58
 Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 6/152 (3%)

Query: 87  QVSCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELN 145
           +V  Y   I  YL+  E + + K  Y+  Q      +I   MR++LVDW+VEV E ++L 
Sbjct: 2   EVPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQ 56

Query: 146 HETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSI 205
           +ETL+LAV  +D +L  +   R  LQL+G  A+ ++SKF++  PP++++  YI   TY+ 
Sbjct: 57  NETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTK 116

Query: 206 QDLKDMEIKLVTAIGFDLGIPLSYRFLRRYAR 237
           + +  ME  ++  + FDL  P   +FL +Y  
Sbjct: 117 KQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFL 148
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 99.93
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 99.93
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 99.91
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.91
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.91
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.87
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.73
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.48
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.13
2pmi_B 293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.67
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 98.21
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.75
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.93
2ivx_A257 Cyclin-T2; transcription regulation, cell division 88.28
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 88.22
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 86.48
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 84.57
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 83.64
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 83.42
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 81.91
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 80.71
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 80.58
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-39  Score=287.40  Aligned_cols=148  Identities=20%  Similarity=0.293  Sum_probs=139.4

Q ss_pred             CCCCccchhhhHHHHHHHHHHHHhhCCCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q psy7892          81 TWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYL  160 (240)
Q Consensus        81 ~~~dp~~~~eY~~dI~~~L~~~E~~~~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyL  160 (240)
                      ...||.++++   +||++|+++|.++.+   ...|+     ++++.||.++|+||++|+..|++.++|+|+||+|+||||
T Consensus        13 ~~~dp~l~~d---~i~~~l~~~E~~~~p---~~~q~-----~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfL   81 (252)
T 1f5q_B           13 SLLNEEDCRQ---MIYRSEREHDARMVG---VNVDQ-----HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELF   81 (252)
T ss_dssp             TTCCHHHHHH---HHHHHHHHHHHHHSS---SSHHH-----HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             CcCCHHHhHH---HHHHHHHHHHHHhCc---CccCC-----CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            5568998865   999999999988643   44577     899999999999999999999999999999999999999


Q ss_pred             hcccccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHh
Q psy7892         161 GKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARIR  239 (240)
Q Consensus       161 s~~~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~~pTp~~FL~~f~k~a  239 (240)
                      ++..+.+.++||+|+||||||||+||..||.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|++.+
T Consensus        82 s~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~  160 (252)
T 1f5q_B           82 LSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIM  160 (252)
T ss_dssp             HHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999864
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 240
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 6e-36
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 1e-33
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 3e-32
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-31
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 7e-30
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 5e-19
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-15
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 4e-13
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score =  121 bits (306), Expect = 6e-36
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 95  IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 154
           +   LK RE        L ++  TE   +  + R++L+ WM  + E+FEL+     L+V 
Sbjct: 2   VLNNLKLRELLLPKFTSL-WEIQTE---VTVDNRTILLTWMHLLCESFELDKSVFPLSVS 57

Query: 155 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 214
           ++D YL K   ++  LQ +GA  + + SK     P  +S L Y+    ++  +L + E  
Sbjct: 58  ILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKD 117

Query: 215 LVTAIGFDL 223
           ++ A+ +D 
Sbjct: 118 ILEALKWDT 126
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 100.0
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.85
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.87
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.73
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.43
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.85
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.44
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 92.43
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-38  Score=252.08  Aligned_cols=136  Identities=25%  Similarity=0.549  Sum_probs=129.9

Q ss_pred             CccchhhhHHHHHHHHHHHHhhC-CCCCccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Q psy7892          84 DPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGK  162 (240)
Q Consensus        84 dp~~~~eY~~dI~~~L~~~E~~~-~~~~yl~~q~~~~~~~it~~~R~~lvdWl~ev~~~~~L~~eTl~lAV~ilDRyLs~  162 (240)
                      +|.++..|++|||.+|.++|.++ +.++|+.+|+     +++++||.++++||++|+..++++++|+|+||+||||||+.
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~-----~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~   77 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMAT   77 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCT-----TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCC-----CCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhc
Confidence            68888999999999999999886 5679999999     99999999999999999999999999999999999999986


Q ss_pred             c-cccCccchhhhhhccccccccccCCCCChhhHHHHhCCCCCHHHHHHHHHHHHHHcCCccC
Q psy7892         163 V-VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLG  224 (240)
Q Consensus       163 ~-~v~~~~lqLvg~tcL~IAsK~eE~~~p~i~dl~~~~~~~yt~~ei~~mE~~IL~~L~f~L~  224 (240)
                      . .+.++++||+|+||||||+|+||..+|.+++++++|++.||+++|++||+.||++|+|+|+
T Consensus        78 ~~~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          78 QENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             CCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             cccccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            5 4899999999999999999999999999999999999999999999999999999999986
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure