Psyllid ID: psy7930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEKRWRS
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHccccEEEEEcccccccEEEcHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHccccEEEEccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccEEEEEEccHHHHHHHHHccccEEEEHcccccccccccHHHHHHHHHHccccEEEEEEccccccEEccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHccccEEEHHHHHccccHHHHcccc
Coil and Loop (DISEMBL)
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALseggltptlgLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDChqfvesgadgfvigaltgeqeIDIEFIRQLKTiigdrpitfhrafdvvrepnekrwrs
Flexible Loop (DISEMBL)
eylsilwnkttlEVCVDSVASALAAVRGGADRLELCAALseggltptlglYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTiigdrpitfhrafdvvrepnekrwrs
Low Complexity Region (SEG)
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEKRWRS
Disordered region (IsUnstruct)
*YLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV**********
Disordered Region (DISOPRED)
********KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEKRW**
Disordered Region (DISEMBL)
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVR*********
Disordered Region (DISPRO)
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EYLSILWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEKRWRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9NTM9	273	Copper homeostasis protei	yes	N/A	0.897	0.479	0.537	2e-32
Q9D8X1	272	Copper homeostasis protei	yes	N/A	0.897	0.481	0.515	4e-30
Q9VF71	263	Copper homeostasis protei	yes	N/A	0.869	0.482	0.472	3e-29
Q87DU4	267	Copper homeostasis protei	yes	N/A	0.897	0.490	0.469	3e-25
Q9CNA6	244	Copper homeostasis protei	yes	N/A	0.869	0.520	0.460	2e-24
B0URL9	243	Copper homeostasis protei	yes	N/A	0.869	0.522	0.429	5e-24
Q7N557	248	Copper homeostasis protei	yes	N/A	0.883	0.520	0.430	1e-23
A8GFJ9	252	Copper homeostasis protei	yes	N/A	0.869	0.503	0.445	2e-23
Q7NY61	247	Copper homeostasis protei	yes	N/A	0.883	0.522	0.423	7e-23
Q9PDN8	267	Copper homeostasis protei	yes	N/A	0.876	0.479	0.480	8e-23

>sp|Q9NTM9|CUTC_HUMAN Copper homeostasis protein cutC homolog OS=Homo sapiens GN=CUTC PE=1 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 24  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 84  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 143 TFHRAFDMVHDP 154

May play a role in copper homeostasis. Can bind one Cu(1+) per subunit.
Homo sapiens (taxid: 9606)

>sp|Q9D8X1|CUTC_MOUSE Copper homeostasis protein cutC homolog OS=Mus musculus GN=Cutc PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 87/132 (65%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 23  NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQSVQIPVFVMIR 82

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  +    P+
Sbjct: 83  PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCLSLVALCRPLPV 141

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 142 TFHRAFDMVHDP 153

May play a role in copper homeostasis. Can bind one Cu(1+) per subunit.

Mus musculus (taxid: 10090)

>sp|Q9VF71|CUTC_DROME Copper homeostasis protein cutC homolog OS=Drosophila melanogaster GN=CG6136 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/127 (47%), Positives = 84/127 (66%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LEVCVDS+ SA AA  GGA R+ELC+AL EGGLTP++G  + IK  + +P++ M+R R G
Sbjct: 12  LEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGTLKTIKETLTMPIYCMLRPRRG 71

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DFV+S  E   +  D     E+GADGFV G+L  ++ I+++  R +    G  P+TFHR
Sbjct: 72  TDFVYSDEEMCALLTDMDLLRENGADGFVFGSLNPDRSINVDQCRHVLLASGGLPVTFHR 131

Query: 132 AFDVVRE 138
           AFD+  +
Sbjct: 132 AFDLTDQ 138

Involved in copper homeostasis.

Drosophila melanogaster (taxid: 7227)

>sp|Q87DU4|CUTC_XYLFT Copper homeostasis protein CutC OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=cutC PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 80/132 (60%), Gaps = 1/132 (0%)

Query: 9   KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRV 68
              LEV   SVASALAA  GGA R+ELC  L  GGLTP+ G+  V++  + +P++V+IR 
Sbjct: 25  SAGLEVAAGSVASALAAQEGGAMRVELCHGLEGGGLTPSYGMLAVVRERLHIPLYVLIRP 84

Query: 69  RAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128
           R G DFVFS+ E E+M  D    V  G DG V+GAL    E+D+  +R L    G   +T
Sbjct: 85  RGG-DFVFSEEEMEVMCGDVECCVRLGCDGVVLGALDPAGEVDMGMMRVLIAAAGSLGVT 143

Query: 129 FHRAFDVVREPN 140
           FHRA DV  +P 
Sbjct: 144 FHRAIDVSADPG 155

Involved in copper homeostasis.

Xylella fastidiosa (strain Temecula1 / ATCC 700964) (taxid: 183190)

>sp|Q9CNA6|CUTC_PASMU Copper homeostasis protein CutC OS=Pasteurella multocida (strain Pm70) GN=cutC PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 1/128 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           +EVC+D++ S   A   GADRLELCA LS GG+TP+  L +       +P +VMIR RAG
Sbjct: 3   IEVCIDNIESVHIAQNAGADRLELCACLSVGGVTPSYSLIKSAVDFANIPCYVMIRPRAG 62

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF+FS  E  +M  D H   + GA G VIGALT   +ID+     L        +TFHR
Sbjct: 63  -DFLFSTQEVNMMLDDIHLAKQLGAQGIVIGALTKHADIDLSVCETLIQAAEGLGVTFHR 121

Query: 132 AFDVVREP 139
           AFD+ R+P
Sbjct: 122 AFDLCRDP 129

Involved in copper homeostasis.

Pasteurella multocida (strain Pm70) (taxid: 272843)

>sp|B0URL9|CUTC_HAES2 Copper homeostasis protein CutC OS=Haemophilus somnus (strain 2336) GN=cutC PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           +E+C+D++ SAL A   GADRLE+C  L+ GG+TP   L + +  +  +P +VMIR R+G
Sbjct: 3   IEICIDNIESALIAQNSGADRLEVCGCLALGGVTPPYSLIKTVLDVCNIPCYVMIRPRSG 62

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF+F+  E ++M  D H   + GA G VIGALT   EID+    +L +      +TFHR
Sbjct: 63  -DFLFNAHEIKMMEQDIHIAKQLGAQGVVIGALTENGEIDLSICHRLISAAEGLGVTFHR 121

Query: 132 AFDVVREP 139
           AFD+  +P
Sbjct: 122 AFDLCSDP 129

Involved in copper homeostasis.

Haemophilus somnus (strain 2336) (taxid: 228400)

>sp|Q7N557|CUTC_PHOLL Copper homeostasis protein CutC OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=cutC PE=3 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 10  TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR 69
           T LE+C  SV  AL A + GADR+ELCA+ +EGGLTP+ G  +     + +PV+ ++R R
Sbjct: 2   TKLEICCFSVGCALIAQQAGADRIELCASPAEGGLTPSFGTLKQAIEQLTIPVYPIVRPR 61

Query: 70  AGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129
            G DF +S ++ E+M  D  Q  + G  G V G L  E  ID+  ++QL  + GD  +TF
Sbjct: 62  GG-DFCYSHSDFEVMKNDVAQIRDMGFMGVVFGVLDEEGHIDLPRMQQLMALSGDMAVTF 120

Query: 130 HRAFDVVREP 139
           HRAFD+   P
Sbjct: 121 HRAFDMCFNP 130

Involved in copper homeostasis.

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

>sp|A8GFJ9|CUTC_SERP5 Copper homeostasis protein CutC OS=Serratia proteamaculans (strain 568) GN=cutC PE=3 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 80/128 (62%), Gaps = 1/128 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LEVC  SV  AL A R GADR+ELCA+ SEGGLTP+ G  R+ +  V VPV  +IR R G
Sbjct: 4   LEVCCYSVDCALTAERAGADRIELCASPSEGGLTPSYGSLRLARDRVSVPVHPIIRPRGG 63

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF +   + +++  D  Q  + G  G V+G L  E  ID++ +R++  + G+  +TFHR
Sbjct: 64  -DFCYGAVDFDVIKHDIAQIRDMGFAGVVVGMLDEEGHIDLQRMREVMRLSGNMAVTFHR 122

Query: 132 AFDVVREP 139
           AFD+ + P
Sbjct: 123 AFDMCQNP 130

Involved in copper homeostasis.

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|Q7NY61|CUTC_CHRVO Copper homeostasis protein CutC OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=cutC PE=3 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LE+C  S+AS +AA  GGA R+ELC  L EGG TP+ G   + +  + + +  +IR R G
Sbjct: 5   LEICAGSLASCIAAQEGGAQRVELCDNLGEGGTTPSYGALAMARGRLNIALHAIIRPRGG 64

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF++S  E + MA D       G DG V+G LT + ++D+   RQL  + G   +TFHR
Sbjct: 65  -DFLYSALEFDAMAHDVEVCRSLGLDGVVLGLLTADGDVDVARTRQLAALAGPMAVTFHR 123

Query: 132 AFDVVREPNE 141
           AFD+ REP +
Sbjct: 124 AFDLAREPEQ 133

Involved in copper homeostasis.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q9PDN8|CUTC_XYLFA Copper homeostasis protein CutC OS=Xylella fastidiosa (strain 9a5c) GN=cutC PE=3 SV=1

 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 1/129 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LEV   SVASALAA  GGA R+ELC  L  GGLTP+ G+  V++  + +P++V+IR R G
Sbjct: 28  LEVAAGSVASALAAQEGGAMRVELCHGLGGGGLTPSYGMLAVVRERLHIPLYVLIRPRGG 87

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DFVFS+ E E+M  D    V  G DG V+GAL    E+D+  +R L  + G   +TFHR
Sbjct: 88  -DFVFSEEEMEVMCCDVECCVRLGCDGVVLGALDPAGEVDMGMMRVLIAVAGSLGVTFHR 146

Query: 132 AFDVVREPN 140
           A DV  +P 
Sbjct: 147 AIDVSADPG 155

Involved in copper homeostasis.

Xylella fastidiosa (taxid: 2371)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
328714068	245	PREDICTED: copper homeostasis protein cu	0.869	0.518	0.535	5e-32
328714076	208	PREDICTED: copper homeostasis protein cu	0.917	0.644	0.518	8e-32
326432809	419	hypothetical protein PTSG_12884 [Salping	0.938	0.326	0.506	1e-31
410901272	251	PREDICTED: copper homeostasis protein cu	0.869	0.505	0.531	5e-31
4680703	273	CGI-32 protein [Homo sapiens]	0.897	0.479	0.537	8e-31
296220985	273	PREDICTED: copper homeostasis protein cu	0.897	0.479	0.537	1e-30
266618703	287	Chain A, Crystal Structure Of Human Copp	0.897	0.456	0.537	2e-30
148596990	273	copper homeostasis protein cutC homolog	0.897	0.479	0.537	2e-30
297687194	273	PREDICTED: copper homeostasis protein cu	0.897	0.479	0.537	2e-30
62901834	295	CGI-32 [synthetic construct]	0.897	0.444	0.537	2e-30

>gi|328714068|ref|XP_001947695.2| PREDICTED: copper homeostasis protein cutC homolog [Acyrthosiphon pisum]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/127 (53%), Positives = 88/127 (69%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           +E+CVDSV SA+ AV GGA RLELC+ALSEGGLTP+LGL + +K +V +P+FVM+R R G
Sbjct: 1   MEICVDSVESAINAVNGGAHRLELCSALSEGGLTPSLGLLKTLKTMVSIPIFVMLRPRCG 60

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
           +DF +S  E  ++  DC  F  +GADGFV GALT    IDI+    +       P+TFHR
Sbjct: 61  YDFQYSDLEIRVILEDCTLFKNAGADGFVFGALTSTGYIDIDACVSVILTAQPLPVTFHR 120

Query: 132 AFDVVRE 138
           AFDV  +
Sbjct: 121 AFDVATQ 127

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714076|ref|XP_003245260.1| PREDICTED: copper homeostasis protein cutC homolog [Acyrthosiphon pisum]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 92/135 (68%), Gaps = 1/135 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           +E+CVDSV SA+ AV GGA RLELC+ALSEGGLTP+LGL + +K +V +P+FVM+R R G
Sbjct: 1   MEICVDSVESAINAVNGGAHRLELCSALSEGGLTPSLGLLKTLKTMVSIPIFVMLRPRCG 60

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
           +DF +S  E  ++  DC  F  +GADGFV GALT    IDI+    +       P+TFHR
Sbjct: 61  YDFQYSDLEIRVILEDCTLFKNAGADGFVFGALTSTGYIDIDACVSVILTAQPLPVTFHR 120

Query: 132 AFDV-VREPNEKRWR 145
           AFDV  ++P E   +
Sbjct: 121 AFDVATQDPIEMAQK 135

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326432809|gb|EGD78379.1| hypothetical protein PTSG_12884 [Salpingoeca sp. ATCC 50818]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 95/144 (65%), Gaps = 7/144 (4%)

Query: 1   EYLSILW------NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVI 54
           ++  + W      N   LEVCVDSVASA  A +GGADRLELC ALSEGGLTPT+GL + +
Sbjct: 153 KHCHVFWKERTQHNPLVLEVCVDSVASAAQAQQGGADRLELCCALSEGGLTPTVGLAKAV 212

Query: 55  KRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEF 114
              V +PVF ++R RAG DF+FS+AE +IM  D       G  GFVIGAL  + ++D   
Sbjct: 213 VCAVSIPVFALVRPRAG-DFLFSEAEVQIMVDDIEALRACGIQGFVIGALNADGDVDTAA 271

Query: 115 IRQLKTIIGDRPITFHRAFDVVRE 138
           +++L    G  P+TFHRAFD+VR+
Sbjct: 272 MKKLLAACGPLPVTFHRAFDMVRD 295

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|410901272|ref|XP_003964120.1| PREDICTED: copper homeostasis protein cutC homolog [Takifugu rubripes]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 1/128 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           +EVCVDSV SA+ A RGGA RLELC++L+EGGLTP+LGL +V+K+ V +PV+VMIR R G
Sbjct: 7   IEVCVDSVESAVNAERGGAGRLELCSSLTEGGLTPSLGLLQVLKQYVKIPVYVMIRPRGG 66

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF++S  E ++M  D     + GADG V+GALT + ++D E   +L       P+TFHR
Sbjct: 67  -DFLYSDQEVQVMRKDIELMKKHGADGLVLGALTEDGQVDAELCMELLAAARPLPVTFHR 125

Query: 132 AFDVVREP 139
           AFD+ R+P
Sbjct: 126 AFDMARDP 133

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4680703|gb|AAD27741.1|AF132966_1 CGI-32 protein [Homo sapiens]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 24  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 84  PRGG-DFLYSDREIEVMKADIRLAKPYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 143 TFHRAFDMVHDP 154

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296220985|ref|XP_002756563.1| PREDICTED: copper homeostasis protein cutC homolog [Callithrix jacchus]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 24  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 84  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 143 TFHRAFDMVHDP 154

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|266618703|pdb|3IWP|A Chain A, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618704|pdb|3IWP|B Chain B, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618705|pdb|3IWP|C Chain C, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618706|pdb|3IWP|D Chain D, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618707|pdb|3IWP|E Chain E, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618708|pdb|3IWP|F Chain F, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618709|pdb|3IWP|G Chain G, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618710|pdb|3IWP|H Chain H, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618711|pdb|3IWP|I Chain I, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618712|pdb|3IWP|J Chain J, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618713|pdb|3IWP|K Chain K, Crystal Structure Of Human Copper Homeostasis Protein Cutc gi|266618714|pdb|3IWP|L Chain L, Crystal Structure Of Human Copper Homeostasis Protein Cutc

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 38  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 97

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 98  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 156

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 157 TFHRAFDMVHDP 168

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148596990|ref|NP_057044.2| copper homeostasis protein cutC homolog [Homo sapiens] gi|332834839|ref|XP_003312774.1| PREDICTED: copper homeostasis protein cutC homolog [Pan troglodytes] gi|397510235|ref|XP_003825506.1| PREDICTED: copper homeostasis protein cutC homolog [Pan paniscus] gi|54035909|sp|Q9NTM9.1|CUTC_HUMAN RecName: Full=Copper homeostasis protein cutC homolog gi|18088965|gb|AAH21105.1| CutC copper transporter homolog (E. coli) [Homo sapiens] gi|20809437|gb|AAH28948.1| CutC copper transporter homolog (E. coli) [Homo sapiens] gi|119570239|gb|EAW49854.1| cutC copper transporter homolog (E. coli), isoform CRA_a [Homo sapiens] gi|189054466|dbj|BAG37239.1| unnamed protein product [Homo sapiens] gi|410206618|gb|JAA00528.1| cutC copper transporter homolog [Pan troglodytes] gi|410249382|gb|JAA12658.1| cutC copper transporter homolog [Pan troglodytes] gi|410296184|gb|JAA26692.1| cutC copper transporter homolog [Pan troglodytes] gi|410334083|gb|JAA35988.1| cutC copper transporter homolog [Pan troglodytes]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 24  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 84  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 143 TFHRAFDMVHDP 154

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297687194|ref|XP_002821104.1| PREDICTED: copper homeostasis protein cutC homolog [Pongo abelii]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 24  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 84  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 143 TFHRAFDMVHDP 154

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62901834|gb|AAY18868.1| CGI-32 [synthetic construct]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 35  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 94

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 95  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 153

Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 154 TFHRAFDMVHDP 165

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
UNIPROTKB|Q9NTM9	273	CUTC "Copper homeostasis prote	0.897	0.479	0.537	5.4e-31
RGD|1304966	272	Cutc "cutC copper transporter	0.897	0.481	0.522	3.8e-30
UNIPROTKB|E2R9Z0	259	CUTC "Uncharacterized protein"	0.897	0.505	0.522	1e-29
UNIPROTKB|J9NX14	273	CUTC "Uncharacterized protein"	0.897	0.479	0.522	1e-29
UNIPROTKB|F1S8W0	273	CUTC "Uncharacterized protein"	0.897	0.479	0.522	1e-29
UNIPROTKB|H7BWV5	273	CUTC "Uncharacterized protein"	0.897	0.479	0.515	1.6e-29
MGI|MGI:1913638	272	Cutc "cutC copper transporter	0.897	0.481	0.515	2.7e-29
UNIPROTKB|F1N957	251	CUTC "Uncharacterized protein"	0.869	0.505	0.531	9.1e-29
FB|FBgn0038332	263	CG6136 [Drosophila melanogaste	0.849	0.471	0.483	5e-28
ZFIN|ZDB-GENE-041010-144	251	cutc "cutC copper transporter	0.869	0.505	0.5	1.7e-27

UNIPROTKB|Q9NTM9 CUTC "Copper homeostasis protein cutC homolog" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 71/132 (53%), Positives = 89/132 (67%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    24 NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 83

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct:    84 PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 142

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   143 TFHRAFDMVHDP 154

GO:0005507 "copper ion binding" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006825 "copper ion transport" evidence=NAS

GO:0055070 "copper ion homeostasis" evidence=NAS

GO:0051262 "protein tetramerization" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

RGD|1304966 Cutc "cutC copper transporter homolog (E.coli)" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 69/132 (52%), Positives = 89/132 (67%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGADR+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    23 NGFLMEVCVDSVESAVNAERGGADRIELCSGLLEGGTTPSMGVLQVVKQSVQIPVFVMIR 82

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  +    P+
Sbjct:    83 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDQELCLSLVALCRPLPV 141

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V++P
Sbjct:   142 TFHRAFDMVQDP 153

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016235 "aggresome" evidence=IEA;ISO

GO:0051262 "protein tetramerization" evidence=IEA;ISO

GO:0055070 "copper ion homeostasis" evidence=IEA

UNIPROTKB|E2R9Z0 CUTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/132 (52%), Positives = 87/132 (65%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    24 NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQCVQIPVFVMIR 83

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct:    84 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGNIDKELCMSLVAICRPLPV 142

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   143 TFHRAFDMVHDP 154

GO:0051262 "protein tetramerization" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|J9NX14 CUTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/132 (52%), Positives = 87/132 (65%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    24 NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQCVQIPVFVMIR 83

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct:    84 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGNIDKELCMSLVAICRPLPV 142

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   143 TFHRAFDMVHDP 154

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|F1S8W0 CUTC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/132 (52%), Positives = 87/132 (65%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    24 NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQYVQIPVFVMIR 83

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct:    84 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLVAICRPLPV 142

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   143 TFHRAFDMVHDP 154

GO:0051262 "protein tetramerization" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

UNIPROTKB|H7BWV5 CUTC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 68/132 (51%), Positives = 87/132 (65%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    24 NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQYVQIPVFVMIR 83

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  +    P+
Sbjct:    84 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLVALCRPLPV 142

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   143 TFHRAFDMVHDP 154

GO:0051262 "protein tetramerization" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

MGI|MGI:1913638 Cutc "cutC copper transporter homolog (E.coli)" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/132 (51%), Positives = 87/132 (65%)

Query:     8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
             N   +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP++G+ +V+K+ V +PVFVMIR
Sbjct:    23 NGFLMEVCVDSVESAVNAERGGAGRIELCSGLLEGGTTPSMGVLQVVKQSVQIPVFVMIR 82

Query:    68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
              R G DF++S  E E+M  D       GADG V GALT +  ID E    L  +    P+
Sbjct:    83 PRGG-DFLYSDREVEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCLSLVALCRPLPV 141

Query:   128 TFHRAFDVVREP 139
             TFHRAFD+V +P
Sbjct:   142 TFHRAFDMVHDP 153

GO:0005507 "copper ion binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051262 "protein tetramerization" evidence=ISO

GO:0055070 "copper ion homeostasis" evidence=IEA

UNIPROTKB|F1N957 CUTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 68/128 (53%), Positives = 84/128 (65%)

Query:    12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
             +E  VDSV SA+ A RGGA R+ELCA L EGG TP++GL +V+K+ V VPVFVMIR R G
Sbjct:     7 MEESVDSVESAVNAERGGAGRIELCAGLVEGGTTPSMGLLQVVKQCVRVPVFVMIRPRGG 66

Query:    72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
              DF++S  E E+M  D       GADG V GALT +  ID E    L  +    P+TFHR
Sbjct:    67 -DFLYSDREVEVMKADIRLAKLHGADGLVFGALTEDGRIDTELCTALLAVCRPLPVTFHR 125

Query:   132 AFDVVREP 139
             AFD+V +P
Sbjct:   126 AFDMVHDP 133

GO:0005507 "copper ion binding" evidence=IEA

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

FB|FBgn0038332 CG6136 [Drosophila melanogaster (taxid:7227)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 60/124 (48%), Positives = 83/124 (66%)

Query:    12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
             LEVCVDS+ SA AA  GGA R+ELC+AL EGGLTP++G  + IK  + +P++ M+R R G
Sbjct:    12 LEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGTLKTIKETLTMPIYCMLRPRRG 71

Query:    72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
              DFV+S  E   +  D     E+GADGFV G+L  ++ I+++  R +    G  P+TFHR
Sbjct:    72 TDFVYSDEEMCALLTDMDLLRENGADGFVFGSLNPDRSINVDQCRHVLLASGGLPVTFHR 131

Query:   132 AFDV 135
             AFD+
Sbjct:   132 AFDL 135

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

ZFIN|ZDB-GENE-041010-144 cutc "cutC copper transporter homolog (E. coli)" [Danio rerio (taxid:7955)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 64/128 (50%), Positives = 83/128 (64%)

Query:    12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
             +EVCVDSV SA+ A RGGA R+ELC+ L EGG TP+ GL +V+K  V +PVFVMIR R G
Sbjct:     7 MEVCVDSVESAINAERGGAARIELCSNLLEGGTTPSTGLLQVVKENVEIPVFVMIRPRGG 66

Query:    72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
              DF++S+ E E+M  +  Q     ADG V GALT +  +      +L       P+TFHR
Sbjct:    67 -DFLYSEWEVEVMKREIQQMKSQQADGLVFGALTEDGRVHTHICMELLAASRPLPVTFHR 125

Query:   132 AFDVVREP 139
             AFD+V +P
Sbjct:   126 AFDMVHDP 133

GO:0055070 "copper ion homeostasis" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NTM9	CUTC_HUMAN	No assigned EC number	0.5378	0.8972	0.4798	yes	N/A
Q9D8X1	CUTC_MOUSE	No assigned EC number	0.5151	0.8972	0.4816	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
COG3142	241	COG3142, CutC, Uncharacterized protein involved in	6e-48
pfam03932	202	pfam03932, CutC, CutC family	7e-45
PRK11572	248	PRK11572, PRK11572, copper homeostasis protein Cut	1e-35

>gnl|CDD|225684 COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

 Score =  154 bits (391), Expect = 6e-48
 Identities = 64/130 (49%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LEVCV++V   LAA   GADR+ELC AL+EGGLTP+ G+ +    L  +PV+VMIR R G
Sbjct: 4   LEVCVENVEGLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGG 63

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DFV+S  E EIM  D     E G  G V+GALT +  ID+  + +L    G   +TFHR
Sbjct: 64  -DFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHR 122

Query: 132 AFDVVREPNE 141
           AFD   +P E
Sbjct: 123 AFDECPDPLE 132

Length = 241

>gnl|CDD|202815 pfam03932, CutC, CutC family

 Score =  145 bits (367), Expect = 7e-45
 Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 1/130 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LEVC +++ S LAA  GGADR+ELCA L+ GGLTP+ G+ +   +   +PV+VMIR R G
Sbjct: 3   LEVCAENIESLLAAQAGGADRVELCANLAVGGLTPSYGVIKSAAQRAKIPVYVMIRPRGG 62

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DFV+S  E + M  D  + VE GA G V+GALT + EID + + +L    G   +TFHR
Sbjct: 63  -DFVYSDHELKAMLEDILKAVELGAPGVVLGALTADGEIDTKRMEKLIEAAGGLGVTFHR 121

Query: 132 AFDVVREPNE 141
           AFD+  +P E
Sbjct: 122 AFDMCPDPEE 131

Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria. Length = 202

>gnl|CDD|183208 PRK11572, PRK11572, copper homeostasis protein CutC; Provisional

 Score =  122 bits (309), Expect = 1e-35
 Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 10  TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR 69
             LE+C  S+  AL A + GADR+ELCAA  EGGLTP+LG+ + ++  V +PV  +IR R
Sbjct: 2   ALLEICCYSMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR 61

Query: 70  AGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129
            G DF +S  E   M  D     E G  G V G L  +  +D+  +R++    G   +TF
Sbjct: 62  GG-DFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTF 120

Query: 130 HRAFDVVREP 139
           HRAFD+   P
Sbjct: 121 HRAFDMCANP 130

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PRK11572	248	copper homeostasis protein CutC; Provisional	100.0
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	100.0
COG3142	241	CutC Uncharacterized protein involved in copper re	100.0
KOG4013|consensus	255		100.0
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	98.27
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	97.55
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	97.29
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.23
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	97.22
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	97.18
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	97.12
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	97.1
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.07
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	97.07
PRK15452	443	putative protease; Provisional	97.06
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	96.99
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	96.84
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	96.75
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	96.75
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	96.73
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	96.7
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	96.62
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	96.57
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	96.53
PRK07695	201	transcriptional regulator TenI; Provisional	96.53
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	96.45
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	96.42
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	96.34
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.34
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	96.3
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	96.26
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.25
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.24
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	96.23
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	96.21
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.2
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	96.17
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	96.11
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	96.1
PRK06852	304	aldolase; Validated	95.96
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	95.89
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	95.89
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	95.87
PRK09856	275	fructoselysine 3-epimerase; Provisional	95.85
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	95.8
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	95.76
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	95.76
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.71
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.67
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.64
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	95.57
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	95.51
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.47
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.44
PRK06096	284	molybdenum transport protein ModD; Provisional	95.43
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	95.37
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	95.36
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	95.35
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	95.32
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	95.27
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.26
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	95.24
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	95.21
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	95.2
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	95.16
TIGR01334	277	modD putative molybdenum utilization protein ModD.	95.14
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	95.12
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	95.1
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.09
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	95.05
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	95.04
PRK01060	281	endonuclease IV; Provisional	95.03
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	94.98
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	94.96
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	94.94
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	94.93
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	94.85
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	94.8
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	94.78
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	94.76
PRK08999	312	hypothetical protein; Provisional	94.76
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	94.76
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	94.67
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	94.62
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	94.57
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.51
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	94.47
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	94.45
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	94.44
COG0826	347	Collagenase and related proteases [Posttranslation	94.4
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	94.39
PLN02424	332	ketopantoate hydroxymethyltransferase	94.37
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.35
PRK00208	250	thiG thiazole synthase; Reviewed	94.34
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	94.32
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	94.32
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	94.29
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	94.27
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	94.26
PRK07226	267	fructose-bisphosphate aldolase; Provisional	94.2
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	94.2
PRK08227	264	autoinducer 2 aldolase; Validated	94.14
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	94.11
TIGR03679	218	arCOG00187 arCOG00187 universal archaeal metal-bin	94.1
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	94.09
PLN02535	364	glycolate oxidase	94.09
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	94.03
PLN02591	250	tryptophan synthase	93.92
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.88
PLN02979	366	glycolate oxidase	93.88
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	93.83
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	93.77
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	93.75
cd01292	275	metallo-dependent_hydrolases Superfamily of metall	93.74
PRK14024	241	phosphoribosyl isomerase A; Provisional	93.68
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.68
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	93.6
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	93.59
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.56
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.54
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	93.54
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.53
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	93.48
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	93.47
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	93.43
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	93.38
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	93.37
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	93.36
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	93.35
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	93.35
PRK09989	258	hypothetical protein; Provisional	93.33
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	93.32
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	93.31
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	93.24
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	93.15
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	93.12
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	93.11
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	93.08
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	93.03
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	93.03
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	93.02
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	93.01
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	92.99
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.98
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	92.98
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	92.96
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	92.86
PRK06852	304	aldolase; Validated	92.77
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.72
PRK14024	241	phosphoribosyl isomerase A; Provisional	92.69
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	92.68
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	92.66
PRK12331	448	oxaloacetate decarboxylase; Provisional	92.63
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	92.61
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	92.61
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	92.6
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	92.56
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	92.43
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	92.4
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	92.34
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	92.27
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	92.27
PRK07226	267	fructose-bisphosphate aldolase; Provisional	92.21
PRK04302	223	triosephosphate isomerase; Provisional	92.19
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.09
PRK09250	348	fructose-bisphosphate aldolase; Provisional	92.07
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	92.04
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	92.02
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	92.02
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	92.01
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	91.93
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	91.89
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	91.86
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	91.84
PLN02746	347	hydroxymethylglutaryl-CoA lyase	91.73
KOG0538|consensus	363		91.72
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	91.7
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	91.66
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	91.63
PLN02803	548	beta-amylase	91.62
PLN02591	250	tryptophan synthase	91.53
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	91.52
PRK09997	258	hydroxypyruvate isomerase; Provisional	91.46
PRK04302	223	triosephosphate isomerase; Provisional	91.43
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	91.36
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	91.27
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	91.2
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	91.17
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	91.15
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	91.15
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	91.11
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	91.08
COG1082	274	IolE Sugar phosphate isomerases/epimerases [Carboh	90.96
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	90.95
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	90.85
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	90.85
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	90.83
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	90.76
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	90.65
PRK09282	592	pyruvate carboxylase subunit B; Validated	90.42
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	90.41
PRK09250	348	fructose-bisphosphate aldolase; Provisional	90.4
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	90.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	90.32
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	90.3
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	90.29
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	90.26
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	90.25
PRK12677	384	xylose isomerase; Provisional	90.22
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	90.16
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	90.13
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	90.08
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	90.04
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	89.84
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	89.75
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	89.66
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	89.61
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	89.59
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	89.54
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	89.53
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	89.5
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	89.45
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	89.45
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	89.21
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	89.21
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	89.11
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	89.02
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	88.93
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	88.92
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	88.91
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	88.88
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	88.84
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	88.78
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	88.78
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	88.77
PRK07094	323	biotin synthase; Provisional	88.77
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	88.57
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	88.38
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	88.35
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	88.34
PLN02705	681	beta-amylase	88.29
PLN02334	229	ribulose-phosphate 3-epimerase	88.22
PRK07315	293	fructose-bisphosphate aldolase; Provisional	88.21
cd01297	415	D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci	88.13
PRK14041	467	oxaloacetate decarboxylase; Provisional	88.11
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	88.09
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	88.06
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	88.06
PLN02334	229	ribulose-phosphate 3-epimerase	87.93
PRK09061	509	D-glutamate deacylase; Validated	87.87
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	87.86
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	87.8
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	87.74
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	87.71
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	87.54
PF03328	221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	87.53
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	87.53
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	87.52
PRK14040	593	oxaloacetate decarboxylase; Provisional	87.49
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	87.46
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	87.42
PRK08227	264	autoinducer 2 aldolase; Validated	87.35
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	87.33
PF07555	306	NAGidase: beta-N-acetylglucosaminidase ; InterPro:	87.33
PF03659	386	Glyco_hydro_71: Glycosyl hydrolase family 71 ; Int	87.3
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	87.24
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	87.18
PLN02905	702	beta-amylase	87.13
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	87.12
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	87.08
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	86.98
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	86.89
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	86.82
COG1794	230	RacX Aspartate racemase [Cell envelope biogenesis,	86.73
COG1533	297	SplB DNA repair photolyase [DNA replication, recom	86.73
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	86.7
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	86.59
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	86.58
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	86.58
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	86.52
PLN02826	409	dihydroorotate dehydrogenase	86.49
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	86.46
PLN00197	573	beta-amylase; Provisional	86.46
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	86.35
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	86.21
PLN02617	538	imidazole glycerol phosphate synthase hisHF	86.2
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	86.17
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	85.97
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	85.96
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	85.83
PRK09061	509	D-glutamate deacylase; Validated	85.83
KOG1606|consensus	296		85.77
PRK02227	238	hypothetical protein; Provisional	85.63
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	85.57
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	85.56
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	85.5
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	85.46
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	85.46
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	85.39
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	85.23
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	84.95
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	84.92
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	84.89
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	84.76
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	84.69
TIGR00035	229	asp_race aspartate racemase.	84.57
PRK06256	336	biotin synthase; Validated	84.53
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	84.33
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	84.06
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	83.96
PRK13523	337	NADPH dehydrogenase NamA; Provisional	83.82
TIGR02631	382	xylA_Arthro xylose isomerase, Arthrobacter type. T	83.81
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	83.67
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	83.52
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	83.49
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	83.49
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	83.47
cd01454	174	vWA_norD_type norD type: Denitrifying bacteria con	83.38
PRK12330	499	oxaloacetate decarboxylase; Provisional	83.34
PLN02801	517	beta-amylase	83.12
PRK14042	596	pyruvate carboxylase subunit B; Provisional	83.0
PRK07360	371	FO synthase subunit 2; Reviewed	82.98
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	82.9
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	82.8
PRK13576	216	3-dehydroquinate dehydratase; Provisional	82.63
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	82.56
PRK12581	468	oxaloacetate decarboxylase; Provisional	82.48
PRK06806	281	fructose-bisphosphate aldolase; Provisional	82.47
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	82.4
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	82.17
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	82.04
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	81.9
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	81.84
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	81.71
PRK09389	488	(R)-citramalate synthase; Provisional	81.7
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	81.7
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	81.55
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	81.52
PRK12581	468	oxaloacetate decarboxylase; Provisional	81.5
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	81.44
PRK06806	281	fructose-bisphosphate aldolase; Provisional	81.44
PF14307	345	Glyco_tran_WbsX: Glycosyltransferase WbsX	81.41
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	81.32
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	81.08
PRK12331	448	oxaloacetate decarboxylase; Provisional	81.03
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	81.02
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	81.02
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	81.01
PLN02161	531	beta-amylase	80.85
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	80.82
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	80.65
PRK05985	391	cytosine deaminase; Provisional	80.63
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	80.6
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	80.37
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	80.36
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	80.18
PF02449	374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	80.14
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	80.13
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	80.09

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=100.00  E-value=4.9e-60  Score=391.46  Aligned_cols=131  Identities=40%  Similarity=0.667  Sum_probs=129.3

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .+||||++|++++.+|+++||||||||++|++||||||+|+++.+++.++|||+||||| |+|||+||++|+++|++||+
T Consensus         2 ~~lEvcv~s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP-R~gdF~Ys~~E~~~M~~di~   80 (248)
T PRK11572          2 ALLEICCYSMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRP-RGGDFCYSDGEFAAMLEDIA   80 (248)
T ss_pred             ceEEEEECCHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEec-CCCCCCCCHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE  141 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~  141 (146)
                      .++++|+||||||+||+||+||.+++++|+++|+++++|||||||.++||.+
T Consensus        81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~  132 (248)
T PRK11572         81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLN  132 (248)
T ss_pred             HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHH
Confidence            9999999999999999999999999999999999999999999999999986

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=100.00  E-value=2.7e-60  Score=382.62  Aligned_cols=131  Identities=56%  Similarity=0.850  Sum_probs=112.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +++|||++|++++++|+++||||||||++|++||||||+++++++++..++||+||||| |+|||+||++|+++|++||+
T Consensus         1 M~lEvcv~s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRp-r~gdF~Ys~~E~~~M~~dI~   79 (201)
T PF03932_consen    1 MILEVCVESLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRP-RGGDFVYSDEEIEIMKEDIR   79 (201)
T ss_dssp             -EEEEEESSHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--S-SSS-S---HHHHHHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECC-CCCCccCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE  141 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~  141 (146)
                      .++++|+||||||+||+||+||.+++++|+++|+|+++|||||||.++||.+
T Consensus        80 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~  131 (201)
T PF03932_consen   80 MLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEE  131 (201)
T ss_dssp             HHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHH
T ss_pred             HHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHH
Confidence            9999999999999999999999999999999999999999999999999876

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-59  Score=384.24  Aligned_cols=133  Identities=47%  Similarity=0.727  Sum_probs=130.3

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ++++|||++|++++.+|+++||||||||++|++||||||+|+++++++..+||+++|||| |+|||+||+.|+++|++||
T Consensus         1 ~~~lEvCven~~~l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRP-RgGdFvY~~~E~~iM~~DI   79 (241)
T COG3142           1 MMILEVCVENVEGLLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRP-RGGDFVYSDDELEIMLEDI   79 (241)
T ss_pred             CceeeeeccCHhhHHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEec-CCCCcccChHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCcccc
Q psy7930          89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEK  142 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~~  142 (146)
                      +.++++|++|||||+||+||+||.+++++|+++|+|+++|||||||.++||.++
T Consensus        80 ~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~a  133 (241)
T COG3142          80 RLARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEA  133 (241)
T ss_pred             HHHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHH
Confidence            999999999999999999999999999999999999999999999999998753

>KOG4013|consensus

Probab=100.00  E-value=8.7e-57  Score=364.06  Aligned_cols=133  Identities=44%  Similarity=0.699  Sum_probs=129.8

Q ss_pred             ccceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930           8 NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus         8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      ..+++||||+|++||.+|+++||||||||++|.+||||||.|+++.+++...||+++|||| |+|||+||++|+++|++|
T Consensus         8 ~~iKlEvCvDs~eSA~nAe~GGAdRiElCSaL~eGGlTPSvG~l~~~k~~~~iP~ycMiRp-R~GDFvYsd~Em~a~~~D   86 (255)
T KOG4013|consen    8 KQIKLEVCVDSLESAENAEAGGADRIELCSALQEGGLTPSVGFLSILKYKYPIPLYCMIRP-RAGDFVYSDDEMAANMED   86 (255)
T ss_pred             cceeeeeehhhHHHHHhHhhcCccHhHHhhhhccCCCCCcchhhhhhhcccccceEEEEec-CCCCcccchHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930          88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE  141 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~  141 (146)
                      ++.+|+.||||||||+||+||+||++.|..+++.|+|+|||||||||.+.||..
T Consensus        87 v~llk~~GAdGfVFGaLt~dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~  140 (255)
T KOG4013|consen   87 VELLKKAGADGFVFGALTSDGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKT  140 (255)
T ss_pred             HHHHHHcCCCceEEeecCCCCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHH
Confidence            999999999999999999999999999999999999999999999999998864

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=98.27  E-value=9e-06  Score=63.36  Aligned_cols=71  Identities=20%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHcCCCEEEe--cCCCCCCCCCCCHHHHHHHHhhCCCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLEL--CAALSEGGLTPTLGLYRVIKRLVLVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIEL--c~~l~~GGlTPS~g~i~~~~~~~~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      ..+.+..+.++|||+|||  |++....+++++...++++++..+.|  +++|+++         ..      +-++.+++
T Consensus        13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~---------~~------~~~~~~~~   77 (210)
T TIGR01163        13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVEN---------PD------RYIEDFAE   77 (210)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCC---------HH------HHHHHHHH
Confidence            457888899999999999  67778889999999999999877778  6788886         11      22677778


Q ss_pred             cCCCEEEEee
Q psy7930          94 SGADGFVIGA  103 (146)
Q Consensus        94 ~GadG~VfG~  103 (146)
                      .|+||+++-.
T Consensus        78 ~gadgv~vh~   87 (210)
T TIGR01163        78 AGADIITVHP   87 (210)
T ss_pred             cCCCEEEEcc
Confidence            8888877743

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.55  E-value=0.00066  Score=57.52  Aligned_cols=75  Identities=28%  Similarity=0.277  Sum_probs=62.5

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEE--EccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVM--IRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vM--IRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..++||-++|.+++..|.+.|||.|=| +       ..|...++++.+..  ++|+.+.  |.+                
T Consensus       189 ~~~I~VEv~tleea~eA~~~gaD~I~L-D-------~~~~e~l~~~v~~~~~~i~leAsGGIt~----------------  244 (277)
T PRK05742        189 GKPVEVEVESLDELRQALAAGADIVML-D-------ELSLDDMREAVRLTAGRAKLEASGGINE----------------  244 (277)
T ss_pred             CCeEEEEeCCHHHHHHHHHcCCCEEEE-C-------CCCHHHHHHHHHHhCCCCcEEEECCCCH----------------
Confidence            356999999999999999999999955 5       34778899888766  6777765  444                


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCCC
Q psy7930          85 ALDCHQFVESGADGFVIGALTGEQ  108 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~dg  108 (146)
                       +.+..+.+.|+|+|++|.|+.+-
T Consensus       245 -~ni~~~a~tGvD~Isvg~lt~s~  267 (277)
T PRK05742        245 -STLRVIAETGVDYISIGAMTKDV  267 (277)
T ss_pred             -HHHHHHHHcCCCEEEEChhhcCC
Confidence             77889999999999999999763

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=97.29  E-value=0.0018  Score=54.30  Aligned_cols=81  Identities=27%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..++||-++|++++..|.+.|||.|=|      |-.  +.+.++++.+..+  +|+.+.     ||          +=.+
T Consensus       178 ~~~Igvev~t~eea~~A~~~gaDyI~l------d~~--~~e~lk~~v~~~~~~ipi~As-----GG----------I~~~  234 (265)
T TIGR00078       178 ALKIEVEVESLEEAEEAAEAGADIIML------DNM--KPEEIKEAVQLLKGRVLLEAS-----GG----------ITLD  234 (265)
T ss_pred             CCeEEEEeCCHHHHHHHHHcCCCEEEE------CCC--CHHHHHHHHHHhcCCCcEEEE-----CC----------CCHH
Confidence            357999999999999999999998877      223  4477888777653  777664     44          1127


Q ss_pred             HHHHHHHcCCCEEEEeeecCCC-CcCH
Q psy7930          87 DCHQFVESGADGFVIGALTGEQ-EIDI  112 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg-~iD~  112 (146)
                      .+..+.+.|+|++++|.++... .+|.
T Consensus       235 ni~~~a~~Gvd~Isvgait~sa~~~D~  261 (265)
T TIGR00078       235 NLEEYAETGVDVISSGALTHSVPALDF  261 (265)
T ss_pred             HHHHHHHcCCCEEEeCHHHcCCCccce
Confidence            7899999999999999999743 4553

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.23  E-value=0.0074  Score=45.62  Aligned_cols=105  Identities=19%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+.+..|.+.|||=+.+...+   +.-|+      ...++++.+.+  ++|+.+-.+| ..-   ++.+++..+   .+
T Consensus        67 ~~~~a~~a~~~Gad~i~v~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p-~~~---~~~~~~~~~---~~  136 (201)
T cd00945          67 KVAEVEEAIDLGADEIDVVINI---GSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET-RGL---KTADEIAKA---AR  136 (201)
T ss_pred             HHHHHHHHHHcCCCEEEEeccH---HHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC-CCC---CCHHHHHHH---HH
Confidence            4578899999999999997654   33455      45566666764  8999888888 332   555554443   55


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC-CCCeEEeec
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG-DRPITFHRA  132 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~vtFHRA  132 (146)
                      .+.+.|+++|-...=...+..|.+.++++++..+ ++++..---
T Consensus       137 ~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg  180 (201)
T cd00945         137 IAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGG  180 (201)
T ss_pred             HHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECC
Confidence            5677899999765422234569999999998875 456544433

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=97.22  E-value=0.0063  Score=51.79  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      ..|.|.+.+..|++.|+|-|-+-.. ..||.   +|+..+++++++.+++||.+     -|| . .+       -+|+..
T Consensus       114 ~~v~s~~~a~~a~~~GaD~Ivv~g~-eagGh~g~~~~~~ll~~v~~~~~iPvia-----aGG-I-~~-------~~~~~~  178 (307)
T TIGR03151       114 PVVASVALAKRMEKAGADAVIAEGM-ESGGHIGELTTMALVPQVVDAVSIPVIA-----AGG-I-AD-------GRGMAA  178 (307)
T ss_pred             EEcCCHHHHHHHHHcCCCEEEEECc-ccCCCCCCCcHHHHHHHHHHHhCCCEEE-----ECC-C-CC-------HHHHHH
Confidence            4678999999999999999877544 55554   46789999999988999743     355 2 22       245777


Q ss_pred             HHHcCCCEEEEee---ecCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930          91 FVESGADGFVIGA---LTGEQEIDIEFIRQLKTIIGDRPITFHRAFD  134 (146)
Q Consensus        91 ~~~~GadG~VfG~---L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD  134 (146)
                      +..+|||||++|-   ++++..+....-+.|+ .+..-..+.-++|.
T Consensus       179 al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l~-~~~~~dt~~t~~~~  224 (307)
T TIGR03151       179 AFALGAEAVQMGTRFLCAKECNVHPNYKEKVL-KAKDRDTVVTGAST  224 (307)
T ss_pred             HHHcCCCEeecchHHhcccccCCCHHHHHHHH-hCCCCCEEEEecCC
Confidence            7779999999993   4566666666544454 45555555556654

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=97.18  E-value=0.0025  Score=53.31  Aligned_cols=81  Identities=27%  Similarity=0.392  Sum_probs=60.8

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC----CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ...++|-++|++++..|.+.|||.|=|      |-.+|  +.++++.+..    ++||.+     -|| =         =
T Consensus       181 ~~~I~vev~t~eea~~A~~~gaD~I~l------d~~~~--e~l~~~v~~i~~~~~i~i~a-----sGG-I---------t  237 (269)
T cd01568         181 EKKIEVEVETLEEAEEALEAGADIIML------DNMSP--EELKEAVKLLKGLPRVLLEA-----SGG-I---------T  237 (269)
T ss_pred             CCeEEEecCCHHHHHHHHHcCCCEEEE------CCCCH--HHHHHHHHHhccCCCeEEEE-----ECC-C---------C
Confidence            457999999999999999999999977      33333  6667666654    455444     344 1         1


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCCC-CcCH
Q psy7930          85 ALDCHQFVESGADGFVIGALTGEQ-EIDI  112 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~dg-~iD~  112 (146)
                      .+.|..+.+.|+|++++|.++... .+|.
T Consensus       238 ~~ni~~~a~~Gad~Isvgal~~s~~~~D~  266 (269)
T cd01568         238 LENIRAYAETGVDVISTGALTHSAPALDI  266 (269)
T ss_pred             HHHHHHHHHcCCCEEEEcHHHcCCCccCc
Confidence            377899999999999999999776 5664

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=97.12  E-value=0.0054  Score=51.47  Aligned_cols=81  Identities=27%  Similarity=0.322  Sum_probs=62.8

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..++||-|+|++++..|.+.|||.|=|- ++       ++..++++++..  ++|+.+.     ||          +=.+
T Consensus       182 ~~~Igvev~s~eea~~A~~~gaDyI~ld-~~-------~~e~l~~~~~~~~~~ipi~Ai-----GG----------I~~~  238 (268)
T cd01572         182 TLKIEVEVETLEQLKEALEAGADIIMLD-NM-------SPEELREAVALLKGRVLLEAS-----GG----------ITLE  238 (268)
T ss_pred             CCeEEEEECCHHHHHHHHHcCCCEEEEC-Cc-------CHHHHHHHHHHcCCCCcEEEE-----CC----------CCHH
Confidence            3569999999999999999999999773 22       357888888766  4787664     44          1127


Q ss_pred             HHHHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930          87 DCHQFVESGADGFVIGALTGE-QEIDI  112 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~d-g~iD~  112 (146)
                      .|..+.+.|+|||++|.|+-+ ..+|.
T Consensus       239 ni~~~a~~Gvd~Iav~sl~~~a~~~D~  265 (268)
T cd01572         239 NIRAYAETGVDYISVGALTHSAPALDI  265 (268)
T ss_pred             HHHHHHHcCCCEEEEEeeecCCCccCc
Confidence            788999999999999999974 34554

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.10  E-value=0.0052  Score=52.05  Aligned_cols=82  Identities=23%  Similarity=0.273  Sum_probs=61.6

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ..+++|-+.|.+++..|.+.|||.|=| +       .-+...++++++..+.|+.  |-. -||          +=.+.+
T Consensus       188 ~~~Igvsv~tleea~~A~~~gaDyI~l-D-------~~~~e~l~~~~~~~~~~i~--i~A-iGG----------It~~ni  246 (277)
T PRK08072        188 MVKIEVETETEEQVREAVAAGADIIMF-D-------NRTPDEIREFVKLVPSAIV--TEA-SGG----------ITLENL  246 (277)
T ss_pred             CCEEEEEeCCHHHHHHHHHcCCCEEEE-C-------CCCHHHHHHHHHhcCCCce--EEE-ECC----------CCHHHH
Confidence            357899999999999999999999966 2       2466889988887664432  222 244          123788


Q ss_pred             HHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          89 HQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      ..+.+.|+|||++|.|+-+ ..+|
T Consensus       247 ~~~a~~Gvd~IAvg~l~~sa~~~D  270 (277)
T PRK08072        247 PAYGGTGVDYISLGFLTHSVKALD  270 (277)
T ss_pred             HHHHHcCCCEEEEChhhcCCcccc
Confidence            9999999999999999973 3444

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.07  E-value=0.0083  Score=46.70  Aligned_cols=95  Identities=23%  Similarity=0.321  Sum_probs=64.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC----CC--HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT----PT--LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS--~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      .++-+.+.|.+++..|.+.|||-|-+- ....++..    |.  ...++.+++..+ +||.+.     ||=   |.    
T Consensus       105 ~~~g~~~~t~~e~~~a~~~gaD~v~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~-----GGI---~~----  171 (212)
T PRK00043        105 AIIGLSTHTLEEAAAALAAGADYVGVG-PIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAI-----GGI---TP----  171 (212)
T ss_pred             CEEEEeCCCHHHHHHHhHcCCCEEEEC-CccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CCc---CH----
Confidence            457788889999999999999999664 33333332    22  678888888776 887653     551   22    


Q ss_pred             HHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          83 IMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                         +++..+.++|++||++| .+..... -.+.+++|.+.
T Consensus       172 ---~~i~~~~~~Ga~gv~~gs~i~~~~d-~~~~~~~l~~~  207 (212)
T PRK00043        172 ---ENAPEVLEAGADGVAVVSAITGAED-PEAAARALLAA  207 (212)
T ss_pred             ---HHHHHHHHcCCCEEEEeHHhhcCCC-HHHHHHHHHHH
Confidence               67899999999999985 4443322 13445555543

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=97.07  E-value=0.0094  Score=47.33  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +-|...+++||+.|-++..  .+=..-+...++.+++.+++||.++       +|..+..       .++.+++.|+||+
T Consensus        35 ~~A~~~~~~GA~~l~v~~~--~~~~~g~~~~~~~i~~~v~iPi~~~-------~~i~~~~-------~v~~~~~~Gad~v   98 (217)
T cd00331          35 EIAKAYEKAGAAAISVLTE--PKYFQGSLEDLRAVREAVSLPVLRK-------DFIIDPY-------QIYEARAAGADAV   98 (217)
T ss_pred             HHHHHHHHcCCCEEEEEeC--ccccCCCHHHHHHHHHhcCCCEEEC-------CeecCHH-------HHHHHHHcCCCEE
Confidence            4578899999999988863  1222236689999999889999753       4666653       3788999999999


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIGDR  125 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~~~  125 (146)
                      ++|...    ++.+.++++++.+..+
T Consensus        99 ~l~~~~----~~~~~~~~~~~~~~~~  120 (217)
T cd00331          99 LLIVAA----LDDEQLKELYELAREL  120 (217)
T ss_pred             EEeecc----CCHHHHHHHHHHHHHc
Confidence            999754    3347778888777533

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK15452 putative protease; Provisional

Probab=97.06  E-value=0.0077  Score=54.04  Aligned_cols=89  Identities=12%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             ccceeEEEecCHHHHHHHHHcCCCEEEecC---CCCCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930           8 NKTTLEVCVDSVASALAAVRGGADRLELCA---ALSEGGLTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus         8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~---~l~~GGlTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      +++-|=+-+.|++.+.+|.++|||+|=+=.   ++-...-.-+...++++.+.   .++.|++.+.-     +.+ +.|+
T Consensus         2 ~~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~-----i~~-e~el   75 (443)
T PRK15452          2 FKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI-----APH-NAKL   75 (443)
T ss_pred             CccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC-----cCC-HHHH
Confidence            345555678999999999999999998821   11000111244566666554   37889888764     333 6889


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                      +.+.+.++.+.++|+|||+++
T Consensus        76 ~~~~~~l~~l~~~gvDgvIV~   96 (443)
T PRK15452         76 KTFIRDLEPVIAMKPDALIMS   96 (443)
T ss_pred             HHHHHHHHHHHhCCCCEEEEc
Confidence            999999999999999999987

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=96.99  E-value=0.013  Score=44.27  Aligned_cols=79  Identities=28%  Similarity=0.358  Sum_probs=58.9

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCC---CCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALS---EGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~---~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      ...+.+-+.|.+++..+.+.|+|.|-+-.-..   -.|  ...+...++++++..++||.+.     ||-   +.     
T Consensus        95 ~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~-----GGi---~~-----  161 (196)
T cd00564          95 DLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI-----GGI---TP-----  161 (196)
T ss_pred             CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CCC---CH-----
Confidence            45677888899999999999999997743221   113  2345788888888778888775     441   11     


Q ss_pred             HHHHHHHHHHcCCCEEEEe
Q psy7930          84 MALDCHQFVESGADGFVIG  102 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG  102 (146)
                        +++..++++|++||++|
T Consensus       162 --~~i~~~~~~Ga~~i~~g  178 (196)
T cd00564         162 --ENAAEVLAAGADGVAVI  178 (196)
T ss_pred             --HHHHHHHHcCCCEEEEe
Confidence              47888999999999999

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=96.84  E-value=0.01  Score=50.64  Aligned_cols=110  Identities=25%  Similarity=0.286  Sum_probs=72.5

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .+.+=..|.|++.|+.|++.|+|-|=+- ..+.||-+.     ...++.++++.+++||.+     -|| . ++.     
T Consensus       136 gi~v~~~v~s~~~A~~a~~~G~D~iv~q-G~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia-----AGG-I-~dg-----  202 (330)
T PF03060_consen  136 GIKVIPQVTSVREARKAAKAGADAIVAQ-GPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA-----AGG-I-ADG-----  202 (330)
T ss_dssp             T-EEEEEESSHHHHHHHHHTT-SEEEEE--TTSSEE---SSG-HHHHHHHHHHH-SS-EEE-----ESS----SH-----
T ss_pred             CCccccccCCHHHHHHhhhcCCCEEEEe-ccccCCCCCccccceeeHHHHHhhhcCCcEEE-----ecC-c-CCH-----
Confidence            3445568999999999999999997644 556776555     467888888888999864     255 4 333     


Q ss_pred             HHHHHHHHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930          84 MALDCHQFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGDRPITFHRAFD  134 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD  134 (146)
                        +++..+..+|||||++|   ..|++..+....=+.|++ ++.-..+.-+.|+
T Consensus       203 --~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~~-a~~~dtv~t~~~~  253 (330)
T PF03060_consen  203 --RGIAAALALGADGVQMGTRFLATEESGASDAYKQALVD-ATEEDTVLTRSFS  253 (330)
T ss_dssp             --HHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHHH-GGTT-EEEESTTT
T ss_pred             --HHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHHh-CCCCCEEEEeecc
Confidence              56667788999999999   457777787655555555 6667788888887

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=96.75  E-value=0.01  Score=49.89  Aligned_cols=82  Identities=32%  Similarity=0.332  Sum_probs=55.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      .++||-|+|++++..|.+.|||.|-|- +     ..|+  ...++.+++. .++|+.+     -||=   +       .+
T Consensus       184 ~~IgVev~t~eea~~A~~~gaD~I~ld-~-----~~p~~l~~~~~~~~~~~~~i~i~A-----sGGI---~-------~~  242 (272)
T cd01573         184 KKIVVEVDSLEEALAAAEAGADILQLD-K-----FSPEELAELVPKLRSLAPPVLLAA-----AGGI---N-------IE  242 (272)
T ss_pred             CeEEEEcCCHHHHHHHHHcCCCEEEEC-C-----CCHHHHHHHHHHHhccCCCceEEE-----ECCC---C-------HH
Confidence            368999999999999999999988664 3     3332  1233333222 1455444     3551   1       26


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCH
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDI  112 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~  112 (146)
                      .+..+.+.|+|+|++|.++.-..+|.
T Consensus       243 ni~~~~~~Gvd~I~vsai~~a~~~D~  268 (272)
T cd01573         243 NAAAYAAAGADILVTSAPYYAKPADI  268 (272)
T ss_pred             HHHHHHHcCCcEEEEChhhcCcccce
Confidence            78889999999999999986555553

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=96.75  E-value=0.01  Score=48.66  Aligned_cols=91  Identities=22%  Similarity=0.300  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCCEEEec----CCCCCCCCCC---------------CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930          19 VASALAAVRGGADRLELC----AALSEGGLTP---------------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc----~~l~~GGlTP---------------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      .+.+...+++|||.|||.    +-..-|-.-|               ....++++++..++|+++|+-=  .--|.|..+
T Consensus        17 ~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~--n~~~~~G~~   94 (242)
T cd04724          17 LEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYY--NPILQYGLE   94 (242)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEec--CHHHHhCHH
Confidence            356778889999999999    2223333334               2557888887779999999762  012444433


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      .+      ++.++++|++|+++-=|.      .+...++++.++
T Consensus        95 ~f------i~~~~~aG~~giiipDl~------~ee~~~~~~~~~  126 (242)
T cd04724          95 RF------LRDAKEAGVDGLIIPDLP------PEEAEEFREAAK  126 (242)
T ss_pred             HH------HHHHHHCCCcEEEECCCC------HHHHHHHHHHHH
Confidence            33      667889999999995332      245566666665

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=96.73  E-value=0.025  Score=43.80  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=59.2

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC---CCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEG---GLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G---GlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      ..++.+-+.|.+++..|.+.|+|-|-+..-+..+   +.+|  ....++.+++.. ++||.+.     ||-   +.    
T Consensus        96 ~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~-----GGI---~~----  163 (196)
T TIGR00693        96 DKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAI-----GGI---TL----  163 (196)
T ss_pred             CCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CCc---CH----
Confidence            4678999999999999999999999875433332   3333  578888887765 5887664     551   22    


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         +++..+++.|++||++|
T Consensus       164 ---~~~~~~~~~G~~gva~~  180 (196)
T TIGR00693       164 ---ENAAEVLAAGADGVAVV  180 (196)
T ss_pred             ---HHHHHHHHcCCCEEEEh
Confidence               67888899999999887

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.70  E-value=0.013  Score=49.93  Aligned_cols=79  Identities=23%  Similarity=0.223  Sum_probs=60.1

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..+||-++|++++..|.+.|||.|=|-        ..|++.++++.+..     ++|+.    . -||          +=
T Consensus       197 ~~I~VEv~tleea~eA~~~GaD~I~LD--------n~~~e~l~~av~~~~~~~~~i~le----A-sGG----------It  253 (288)
T PRK07428        197 LTIEVETETLEQVQEALEYGADIIMLD--------NMPVDLMQQAVQLIRQQNPRVKIE----A-SGN----------IT  253 (288)
T ss_pred             CEEEEECCCHHHHHHHHHcCCCEEEEC--------CCCHHHHHHHHHHHHhcCCCeEEE----E-ECC----------CC
Confidence            579999999999999999999999776        45668888877643     34433    3 344          11


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          85 ALDCHQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      .+.|..+.+.|+|++++|.++-+ ..+|
T Consensus       254 ~~ni~~ya~tGvD~Isvgsl~~sa~~~D  281 (288)
T PRK07428        254 LETIRAVAETGVDYISSSAPITRSPWLD  281 (288)
T ss_pred             HHHHHHHHHcCCCEEEEchhhhCCCccc
Confidence            37788999999999999999863 3344

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=96.62  E-value=0.016  Score=49.40  Aligned_cols=94  Identities=29%  Similarity=0.333  Sum_probs=60.1

Q ss_pred             ceeEEEecCHH----HHHHHHHcCCCEEEe---cCCCCCC--CCCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          10 TTLEVCVDSVA----SALAAVRGGADRLEL---CAALSEG--GLTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        10 ~~lEvcv~s~~----~a~~A~~~GAdRIEL---c~~l~~G--GlTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      ++.-|...+.+    -+..+++.|||-|||   |..-..+  |.++   ...+++.+++.+++||.|-++| -   +  +
T Consensus       104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p-~---~--~  177 (334)
T PRK07565        104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSP-Y---F--S  177 (334)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCC-C---c--h
Confidence            35566566654    355667789999999   4222221  3333   3467788888889999999999 2   1  1


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHH
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEF  114 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~  114 (146)
                        +   ...-.+.+.+.|+|||++---.....+|.+.
T Consensus       178 --~---~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~  209 (334)
T PRK07565        178 --N---LANMAKRLDAAGADGLVLFNRFYQPDIDLET  209 (334)
T ss_pred             --h---HHHHHHHHHHcCCCeEEEECCcCCCCcChhh
Confidence              1   2333566788999999884323344566544

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=96.57  E-value=0.02  Score=49.55  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=68.5

Q ss_pred             ceeEEEecCHHHHHHHHH------cCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          10 TTLEVCVDSVASALAAVR------GGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~------~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      ..+||=|+|++++..|.+      +|||.|= |+|+  ...-+..|...++++.+..+-.  +.|-- .|| =       
T Consensus       204 ~kIeVEv~tleea~ea~~~~~~~~agaDiIm-LDnm~~~~~~~~~~~e~l~~av~~~~~~--~~lEa-SGG-I-------  271 (308)
T PLN02716        204 MKIEVETRTLEEVKEVLEYLSDTKTSLTRVM-LDNMVVPLENGDVDVSMLKEAVELINGR--FETEA-SGN-V-------  271 (308)
T ss_pred             eeEEEEECCHHHHHHHHHhcccccCCCCEEE-eCCCcccccccCCCHHHHHHHHHhhCCC--ceEEE-ECC-C-------
Confidence            469999999999999999      9999984 5666  7778888999999988765311  22555 455 2       


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGE-QEIDI  112 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~d-g~iD~  112 (146)
                        =.+.|..+.+.|+|.++.|.||-+ ..+|.
T Consensus       272 --t~~ni~~yA~tGVD~Is~Galthsa~~~Di  301 (308)
T PLN02716        272 --TLDTVHKIGQTGVTYISSGALTHSVKALDI  301 (308)
T ss_pred             --CHHHHHHHHHcCCCEEEeCccccCCCccce
Confidence              246788999999999999999974 34553

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.53  E-value=0.024  Score=47.97  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=61.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      .++||=|+|++++..|.+.|||.|=| ++       ||+..++++.+..+  -| ++.|-- -|| .  +.       +.
T Consensus       183 ~~I~VEv~tleea~~A~~~GaDiI~L-Dn-------~~~e~l~~~v~~~~~~~~-~~~ieA-sGg-I--t~-------~n  242 (273)
T PRK05848        183 AKIEIECESLEEAKNAMNAGADIVMC-DN-------MSVEEIKEVVAYRNANYP-HVLLEA-SGN-I--TL-------EN  242 (273)
T ss_pred             ceEEEEeCCHHHHHHHHHcCCCEEEE-CC-------CCHHHHHHHHHHhhccCC-CeEEEE-ECC-C--CH-------HH
Confidence            56899999999999999999998875 43       68999999888532  23 334444 344 4  43       45


Q ss_pred             HHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          88 CHQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      ++.+.+.|+|.||+|.++-+ ..+|
T Consensus       243 i~~ya~~GvD~IsvG~l~~sa~~~D  267 (273)
T PRK05848        243 INAYAKSGVDAISSGSLIHQATWID  267 (273)
T ss_pred             HHHHHHcCCCEEEeChhhcCCCccc
Confidence            67789999999999999974 3355

>PRK07695 transcriptional regulator TenI; Provisional

Probab=96.53  E-value=0.031  Score=43.98  Aligned_cols=82  Identities=21%  Similarity=0.301  Sum_probs=58.6

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCC----CCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSE----GGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~----GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      ..++.+.+.|.+++..|.+.|||-|-+- ....    .|.+| ....++++++.+++||.+.     ||=   +.     
T Consensus        95 ~~~ig~s~~s~e~a~~a~~~Gadyi~~g-~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~-----GGI---~~-----  160 (201)
T PRK07695         95 YLHVGYSVHSLEEAIQAEKNGADYVVYG-HVFPTDCKKGVPARGLEELSDIARALSIPVIAI-----GGI---TP-----  160 (201)
T ss_pred             CCEEEEeCCCHHHHHHHHHcCCCEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----cCC---CH-----
Confidence            4568888999999999999999999543 2211    12222 4678888888888998753     662   33     


Q ss_pred             HHHHHHHHHHcCCCEE-EEeeecC
Q psy7930          84 MALDCHQFVESGADGF-VIGALTG  106 (146)
Q Consensus        84 M~~dI~~~~~~GadG~-VfG~L~~  106 (146)
                        +++..+.+.|++|| |.+.+..
T Consensus       161 --~~~~~~~~~Ga~gvav~s~i~~  182 (201)
T PRK07695        161 --ENTRDVLAAGVSGIAVMSGIFS  182 (201)
T ss_pred             --HHHHHHHHcCCCEEEEEHHHhc
Confidence              56777789999999 5556654

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=96.45  E-value=0.071  Score=42.29  Aligned_cols=94  Identities=29%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      -+.+.+.+..+.+.|||-|=+-+. ..||.+     +...+++++++..++||.+     -|| ...        .+|+.
T Consensus       108 ~v~~~~~~~~~~~~gad~i~~~~~-~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~-----~GG-I~~--------~~~v~  172 (236)
T cd04730         108 TVTSVEEARKAEAAGADALVAQGA-EAGGHRGTFDIGTFALVPEVRDAVDIPVIA-----AGG-IAD--------GRGIA  172 (236)
T ss_pred             eCCCHHHHHHHHHcCCCEEEEeCc-CCCCCCCccccCHHHHHHHHHHHhCCCEEE-----ECC-CCC--------HHHHH
Confidence            356788999999999999876543 445543     4467899888888888764     244 332        35677


Q ss_pred             HHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCC
Q psy7930          90 QFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        90 ~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                      .+.+.|+|||++|   +-+.+-....+. ++++..+.+
T Consensus       173 ~~l~~GadgV~vgS~l~~~~e~~~~~~~-~~~~~~~~~  209 (236)
T cd04730         173 AALALGADGVQMGTRFLATEESGASPAY-KQALLAATA  209 (236)
T ss_pred             HHHHcCCcEEEEchhhhcCcccCCCHHH-HHHHHcCCC
Confidence            7777999999999   333343344444 455554444

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=96.42  E-value=0.041  Score=45.03  Aligned_cols=85  Identities=26%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             HHHcCCCEEEec---CCCCCCCCCCC-----------HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          25 AVRGGADRLELC---AALSEGGLTPT-----------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        25 A~~~GAdRIELc---~~l~~GGlTPS-----------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      .+++ ||-|||.   ++...+|.+=.           ..+++++++..++|+++|..- ..  |+|+.+++      ++.
T Consensus        27 l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~-n~--~~~~~~~~------i~~   96 (244)
T PRK13125         27 LVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL-ED--YVDSLDNF------LNM   96 (244)
T ss_pred             HHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec-ch--hhhCHHHH------HHH
Confidence            3455 9999996   55555555411           257888888889999988754 22  77766653      556


Q ss_pred             HHHcCCCEEEEeeecCCCCcC-HHHHHHHHHHhC
Q psy7930          91 FVESGADGFVIGALTGEQEID-IEFIRQLKTIIG  123 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~iD-~~~~~~Li~~a~  123 (146)
                      +++.|+||+.|=.|    .++ .+...++++.++
T Consensus        97 ~~~~Gadgvii~dl----p~e~~~~~~~~~~~~~  126 (244)
T PRK13125         97 ARDVGADGVLFPDL----LIDYPDDLEKYVEIIK  126 (244)
T ss_pred             HHHcCCCEEEECCC----CCCcHHHHHHHHHHHH
Confidence            77899999988322    222 345666777665

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=96.34  E-value=0.11  Score=40.88  Aligned_cols=110  Identities=22%  Similarity=0.353  Sum_probs=69.5

Q ss_pred             ceeEEEecCHH----HHHHHHHcCCCEEEecCCC--------CCCCC---CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930          10 TTLEVCVDSVA----SALAAVRGGADRLELCAAL--------SEGGL---TP--TLGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus        10 ~~lEvcv~s~~----~a~~A~~~GAdRIELc~~l--------~~GGl---TP--S~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      ++..++..+++    .+..++++|+|-|||+.+-        .-||.   .|  ...+++.+++.+++||.|=+|.  +.
T Consensus        57 ~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~--~~  134 (231)
T cd02801          57 LIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL--GW  134 (231)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee--cc
Confidence            56788888886    5666777899999997531        01111   22  1356667777777888888876  22


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC----CCCcCHHHHHHHHHHhCCCCeE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTG----EQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      +    ..  +...+-++.+.++|+|.+.+-.-+.    .+..|.+.++++.+.. +.|+.
T Consensus       135 ~----~~--~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~-~ipvi  187 (231)
T cd02801         135 D----DE--EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV-SIPVI  187 (231)
T ss_pred             C----Cc--hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC-CCeEE
Confidence            1    11  3455566777888999997644332    2356888887776633 34544

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.34  E-value=0.025  Score=48.51  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC--------------------------------CCCCCHHHHHHHHhh
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEG--------------------------------GLTPTLGLYRVIKRL   57 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G--------------------------------GlTPS~g~i~~~~~~   57 (146)
                      .++=.=|.|+++++.|.+.|||-|=---.-..|                                ..-|.+.+++++++.
T Consensus       113 ~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~  192 (283)
T cd04727         113 VPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL  192 (283)
T ss_pred             CcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh
Confidence            334445789999999999999987543211111                                123678899999998


Q ss_pred             CCCcEE-EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          58 VLVPVF-VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        58 ~~ipv~-vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .++||. +.+    ||  .+|+       +|+..+.++|++||++|
T Consensus       193 ~~iPVV~iAe----GG--I~Tp-------ena~~v~e~GAdgVaVG  225 (283)
T cd04727         193 GRLPVVNFAA----GG--VATP-------ADAALMMQLGADGVFVG  225 (283)
T ss_pred             cCCCeEEEEe----CC--CCCH-------HHHHHHHHcCCCEEEEc
Confidence            899975 232    44  3344       45666678999999988

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=96.30  E-value=0.033  Score=47.61  Aligned_cols=92  Identities=29%  Similarity=0.310  Sum_probs=59.8

Q ss_pred             eeEEEecCHHH----HHHHHHcCCCEEEecCC-CC-CCCCC---C---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCH
Q psy7930          11 TLEVCVDSVAS----ALAAVRGGADRLELCAA-LS-EGGLT---P---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~-l~-~GGlT---P---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      +.-|...+.++    +..+++.|||=|||+-+ +. ..+.+   +   -..+++.+++.+++||.|=++| .-     + 
T Consensus       103 i~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-~~-----~-  175 (325)
T cd04739         103 IASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-FF-----S-  175 (325)
T ss_pred             EEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC-Cc-----c-
Confidence            45666666654    55567789999999753 11 11222   1   1467788888889999999999 31     1 


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHH
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIE  113 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~  113 (146)
                          .+..-++.+.++|+|||++--=.....+|.+
T Consensus       176 ----~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~  206 (325)
T cd04739         176 ----ALAHMAKQLDAAGADGLVLFNRFYQPDIDLE  206 (325)
T ss_pred             ----CHHHHHHHHHHcCCCeEEEEcCcCCCCcccc
Confidence                2445566788999999998543334446653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=96.26  E-value=0.074  Score=44.46  Aligned_cols=102  Identities=23%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC-----CCCC-------------------HHHHHHHHhhC--CCcEEEEEccCCC-C
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG-----LTPT-------------------LGLYRVIKRLV--LVPVFVMIRVRAG-F   72 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG-----lTPS-------------------~g~i~~~~~~~--~ipv~vMIRP~R~-g   72 (146)
                      +.|..|+++|+|-|||..+  .|=     ++|.                   ...++.+++.+  ++||.|=|+| .. .
T Consensus       145 ~aA~~a~~aGfDgveih~~--~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~-~~~~  221 (327)
T cd02803         145 AAARRAKEAGFDGVEIHGA--HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSA-DDFV  221 (327)
T ss_pred             HHHHHHHHcCCCEEEEcch--hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEech-hccC
Confidence            6778899999999999863  111     1442                   56788888887  5666666666 21 1


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC------------CCcCHHHHHHHHHHhCCCCeE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE------------QEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d------------g~iD~~~~~~Li~~a~~~~vt  128 (146)
                      +..++.+|   +.+=++.+.+.|+|.+.+..-+..            ...+.+.++++.+.. +.|+.
T Consensus       222 ~~g~~~~e---~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi  285 (327)
T cd02803         222 PGGLTLEE---AIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVI  285 (327)
T ss_pred             CCCCCHHH---HHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEE
Confidence            11244444   455566778899999987544322            134556666665554 34443

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.25  E-value=0.056  Score=43.31  Aligned_cols=79  Identities=24%  Similarity=0.162  Sum_probs=55.9

Q ss_pred             ceeEEEe-----------cCHHH-HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          10 TTLEVCV-----------DSVAS-ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        10 ~~lEvcv-----------~s~~~-a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      +++|+..           +.++. +..|.+.|||-|-+-       .|+....++++.+..++|| +.+    ||.=..|
T Consensus       125 ~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~-------~~~~~~~~~~i~~~~~~pv-v~~----GG~~~~~  192 (235)
T cd00958         125 LIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK-------YTGDAESFKEVVEGCPVPV-VIA----GGPKKDS  192 (235)
T ss_pred             EEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec-------CCCCHHHHHHHHhcCCCCE-EEe----CCCCCCC
Confidence            5677766           23343 667999999999882       2447888999999889997 332    4422334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      .++.   .+.++.+.++|++|+.+|-
T Consensus       193 ~~~~---l~~~~~~~~~Ga~gv~vg~  215 (235)
T cd00958         193 EEEF---LKMVYDAMEAGAAGVAVGR  215 (235)
T ss_pred             HHHH---HHHHHHHHHcCCcEEEech
Confidence            4443   4667788899999999994

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.24  E-value=0.023  Score=48.73  Aligned_cols=95  Identities=20%  Similarity=0.290  Sum_probs=61.9

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC---------------------------------CCCCHHHHHHHHhhCCCc
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG---------------------------------LTPTLGLYRVIKRLVLVP   61 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG---------------------------------lTPS~g~i~~~~~~~~ip   61 (146)
                      =+.|+++++.|.+.|||-|=--..-..|-                                 +-|++.+++++++..++|
T Consensus       120 d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iP  199 (287)
T TIGR00343       120 GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLP  199 (287)
T ss_pred             cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCC
Confidence            37899999999999999886552212221                                 448999999999988999


Q ss_pred             EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcCHHHHHHHHHHh
Q psy7930          62 VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA-LTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        62 v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~a  122 (146)
                      |.- + . -||  ..|+       +|+..+.++|+|||++|= ++.... -...+++++++.
T Consensus       200 VV~-f-A-iGG--I~TP-------edAa~~melGAdGVaVGSaI~ks~d-P~~~akafv~ai  248 (287)
T TIGR00343       200 VVN-F-A-AGG--VATP-------ADAALMMQLGADGVFVGSGIFKSSN-PEKLAKAIVEAT  248 (287)
T ss_pred             EEE-e-c-cCC--CCCH-------HHHHHHHHcCCCEEEEhHHhhcCCC-HHHHHHHHHHHH
Confidence            741 1 1 244  2344       456667789999999873 333222 133455555544

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=96.23  E-value=0.029  Score=46.84  Aligned_cols=81  Identities=21%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             ceeEEEecCHHHHH----HHHHcC-CCEEEec---CCCCCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930          10 TTLEVCVDSVASAL----AAVRGG-ADRLELC---AALSEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        10 ~~lEvcv~s~~~a~----~A~~~G-AdRIELc---~~l~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~   75 (146)
                      +++-|+..+.++..    .+++.| +|-|||+   -+...||...      ...+++.+++.+++||.|=|+| ..    
T Consensus        94 ~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~----  168 (301)
T PRK07259         94 IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NV----  168 (301)
T ss_pred             EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-Cc----
Confidence            45677777776644    455668 9999994   3444344332      3566777777778999888887 21    


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                            +.+.+-++.+.++|+||+++
T Consensus       169 ------~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        169 ------TDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             ------hhHHHHHHHHHHcCCCEEEE
Confidence                  12334456788899999975

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.21  E-value=0.041  Score=44.86  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=66.9

Q ss_pred             ceeEE-EecCHHHHHHHHHcCCCEEEecCCCC--CCCCCC-CHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHHH
Q psy7930          10 TTLEV-CVDSVASALAAVRGGADRLELCAALS--EGGLTP-TLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lEv-cv~s~~~a~~A~~~GAdRIELc~~l~--~GGlTP-S~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~~   83 (146)
                      .++=+ |+.|.+++..|.+.|||-|=+-.-..  -.+..| ..+.++.+++.+++||+.+  |.|               
T Consensus       111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI~~---------------  175 (221)
T PRK06512        111 MIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGSDL---------------  175 (221)
T ss_pred             CEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCCCH---------------
Confidence            45676 67899999999999999998865321  112222 4678888888889999887  455               


Q ss_pred             HHHHHHHHHHcCCCEEEE-eeecCCCCcCHHHHHHHHHHhC
Q psy7930          84 MALDCHQFVESGADGFVI-GALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        84 M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~~~~~~Li~~a~  123 (146)
                        +++..+++.||+||.+ +.+..... -..+.++|.+...
T Consensus       176 --~n~~~~~~~GA~giAvisai~~~~d-p~~a~~~~~~~~~  213 (221)
T PRK06512        176 --ASAVEVAETGAEFVALERAVFDAHD-PPLAVAQANALLD  213 (221)
T ss_pred             --HHHHHHHHhCCCEEEEhHHhhCCCC-HHHHHHHHHHHHh
Confidence              7889999999999854 44443221 2345566666554

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.20  E-value=0.052  Score=43.06  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .-+++.+.+++..+.+.|++.+=+. +-...-+-|....++++++.+  ++||.+.     || -. |       .+|++
T Consensus       124 ~~v~v~~~~e~~~~~~~g~~~i~~t-~~~~~~~~~~~~~~~~l~~~~~~~~pvia~-----gG-I~-s-------~edi~  188 (217)
T cd00331         124 VLVEVHDEEELERALALGAKIIGIN-NRDLKTFEVDLNTTERLAPLIPKDVILVSE-----SG-IS-T-------PEDVK  188 (217)
T ss_pred             EEEEECCHHHHHHHHHcCCCEEEEe-CCCccccCcCHHHHHHHHHhCCCCCEEEEE-----cC-CC-C-------HHHHH
Confidence            3456789999999999999999443 222122335677888888763  5666442     33 11 2       26788


Q ss_pred             HHHHcCCCEEEEe
Q psy7930          90 QFVESGADGFVIG  102 (146)
Q Consensus        90 ~~~~~GadG~VfG  102 (146)
                      .++++|+||+++|
T Consensus       189 ~~~~~Ga~gvivG  201 (217)
T cd00331         189 RLAEAGADAVLIG  201 (217)
T ss_pred             HHHHcCCCEEEEC
Confidence            8899999999998

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=96.17  E-value=0.033  Score=47.85  Aligned_cols=81  Identities=26%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=|- +       .|.+.++++.+..+-  ++.|-- .||          +=.+.|+
T Consensus       209 ~kIeVEv~sleea~ea~~~gaDiI~LD-n-------~s~e~~~~av~~~~~--~~~iea-SGG----------I~~~ni~  267 (296)
T PRK09016        209 VPVEVEVENLDELDQALKAGADIIMLD-N-------FTTEQMREAVKRTNG--RALLEV-SGN----------VTLETLR  267 (296)
T ss_pred             CCEEEEeCCHHHHHHHHHcCCCEEEeC-C-------CChHHHHHHHHhhcC--CeEEEE-ECC----------CCHHHHH
Confidence            358999999999999999999999664 3       355888888875532  445665 555          2236788


Q ss_pred             HHHHcCCCEEEEeeecCCC-CcC
Q psy7930          90 QFVESGADGFVIGALTGEQ-EID  111 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg-~iD  111 (146)
                      .+.+.|+|.|+.|.|+.+- .+|
T Consensus       268 ~yA~tGVD~Is~galthsa~~lD  290 (296)
T PRK09016        268 EFAETGVDFISVGALTKHVQALD  290 (296)
T ss_pred             HHHhcCCCEEEeCccccCCCccc
Confidence            9999999999999999764 244

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.11  E-value=0.029  Score=47.68  Aligned_cols=83  Identities=28%  Similarity=0.344  Sum_probs=61.0

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..+||=|+|++++..|.++|||.|=| +++       |...++++.+..   +.+-++.|-- .|| -  +       .+
T Consensus       183 ~kIeVEv~~leea~~a~~agaDiI~L-Dn~-------~~e~l~~~v~~l~~~~~~~~~~lea-SGG-I--~-------~~  243 (278)
T PRK08385        183 KVVEVEVESLEDALKAAKAGADIIML-DNM-------TPEEIREVIEALKREGLRERVKIEV-SGG-I--T-------PE  243 (278)
T ss_pred             CcEEEEeCCHHHHHHHHHcCcCEEEE-CCC-------CHHHHHHHHHHHHhcCcCCCEEEEE-ECC-C--C-------HH
Confidence            45899999999999999999997754 444       677888777754   1122455666 566 2  2       35


Q ss_pred             HHHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          87 DCHQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      .|+.+.+.|+|.|+.|.|+-+ ..+|
T Consensus       244 ni~~yA~tGvD~Is~galt~sa~~~D  269 (278)
T PRK08385        244 NIEEYAKLDVDVISLGALTHSVRNFD  269 (278)
T ss_pred             HHHHHHHcCCCEEEeChhhcCCCccc
Confidence            678899999999999999974 3355

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=96.10  E-value=0.0045  Score=48.82  Aligned_cols=78  Identities=22%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .+||-++|.+++..|.+.|+|.|=|-.        +|++.++++.+.+. ++-++.|-- .|| ..-         +.|.
T Consensus        82 ~I~VEv~~~ee~~ea~~~g~d~I~lD~--------~~~~~~~~~v~~l~~~~~~v~ie~-SGG-I~~---------~ni~  142 (169)
T PF01729_consen   82 KIEVEVENLEEAEEALEAGADIIMLDN--------MSPEDLKEAVEELRELNPRVKIEA-SGG-ITL---------ENIA  142 (169)
T ss_dssp             EEEEEESSHHHHHHHHHTT-SEEEEES---------CHHHHHHHHHHHHHHTTTSEEEE-ESS-SST---------TTHH
T ss_pred             eEEEEcCCHHHHHHHHHhCCCEEEecC--------cCHHHHHHHHHHHhhcCCcEEEEE-ECC-CCH---------HHHH
Confidence            499999999999999999999998763        47788988887431 222255555 444 442         4678


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|.+++|.|+-+
T Consensus       143 ~ya~~gvD~isvg~~~~~  160 (169)
T PF01729_consen  143 EYAKTGVDVISVGSLTHS  160 (169)
T ss_dssp             HHHHTT-SEEEECHHHHS
T ss_pred             HHHhcCCCEEEcChhhcC
Confidence            889999999999998654

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK06852 aldolase; Validated

Probab=95.96  E-value=0.057  Score=46.57  Aligned_cols=103  Identities=11%  Similarity=-0.022  Sum_probs=70.6

Q ss_pred             HHHHHHcC------CCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          22 ALAAVRGG------ADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        22 a~~A~~~G------AdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +..|.+.|      ||=+=.--  ..|+ ......++.+.+      ..++|+.+|+-| ||.... ++.+.+.+..-.+
T Consensus       121 VeeAvrlG~~~~~~AdAV~v~v--~~Gs-~~E~~ml~~l~~v~~ea~~~GlPll~~~yp-rG~~i~-~~~~~~~ia~aaR  195 (304)
T PRK06852        121 VEQVVEFKENSGLNILGVGYTI--YLGS-EYESEMLSEAAQIIYEAHKHGLIAVLWIYP-RGKAVK-DEKDPHLIAGAAG  195 (304)
T ss_pred             HHHHHhcCCccCCCceEEEEEE--ecCC-HHHHHHHHHHHHHHHHHHHhCCcEEEEeec-cCcccC-CCccHHHHHHHHH
Confidence            44477777      66655443  3442 122333333322      348999999999 988662 4445567888889


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      .+.++|||=|=.-.-+.++.=|.+.++++++.|++.||.|
T Consensus       196 iaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvi  235 (304)
T PRK06852        196 VAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVC  235 (304)
T ss_pred             HHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEE
Confidence            9999999987776655555567899999999887777765

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.89  E-value=0.067  Score=44.07  Aligned_cols=83  Identities=28%  Similarity=0.310  Sum_probs=54.8

Q ss_pred             eeEEEecCHHH----HHHHHHcCCCEEEecCCCC-CCC-----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCH
Q psy7930          11 TLEVCVDSVAS----ALAAVRGGADRLELCAALS-EGG-----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~-~GG-----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      ++=+...+.++    +..+++.|+|-|||+-+-. .++     ..|  ...+++.+++.+++||.|=++| -     .+.
T Consensus       102 i~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~-----~~~  175 (289)
T cd02810         102 IASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP-Y-----FDL  175 (289)
T ss_pred             EEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC-C-----CCH
Confidence            45565556655    5566677999999974321 111     122  2356777888778998777777 2     233


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                         +.+.+-++.+.++|+|++++-
T Consensus       176 ---~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         176 ---EDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             ---HHHHHHHHHHHHcCCCEEEEE
Confidence               345667778899999999973

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=95.89  E-value=0.11  Score=41.32  Aligned_cols=79  Identities=24%  Similarity=0.349  Sum_probs=55.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecC-CCCC---CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCA-ALSE---GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~-~l~~---GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +.+=+++.|.+++..+.+.|+|-|-... ++..   +...|....++.+++.+++||.+     -|| .. +.       
T Consensus       124 ~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia-----~GG-I~-~~-------  189 (219)
T cd04729         124 CLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA-----EGR-IN-SP-------  189 (219)
T ss_pred             CeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE-----eCC-CC-CH-------
Confidence            4445678999999999999999884321 1111   11235678999999888899864     244 21 22       


Q ss_pred             HHHHHHHHcCCCEEEEe
Q psy7930          86 LDCHQFVESGADGFVIG  102 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG  102 (146)
                      +|++.+.++|+||+.+|
T Consensus       190 ~~~~~~l~~GadgV~vG  206 (219)
T cd04729         190 EQAAKALELGADAVVVG  206 (219)
T ss_pred             HHHHHHHHCCCCEEEEc
Confidence            67778888999999998

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=95.87  E-value=0.12  Score=42.47  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC-
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG-   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G-   95 (146)
                      .+-+....+.|++.|.+-+ ....|+  -|.+.+++++++.+++||.+     .||-.  |.       +|+..+.+.| 
T Consensus       158 ~~~~~~l~~~G~~~iivt~-i~~~g~~~g~~~~~~~~i~~~~~ipvia-----~GGi~--s~-------~di~~~~~~g~  222 (254)
T TIGR00735       158 VEWAKEVEKLGAGEILLTS-MDKDGTKSGYDLELTKAVSEAVKIPVIA-----SGGAG--KP-------EHFYEAFTKGK  222 (254)
T ss_pred             HHHHHHHHHcCCCEEEEeC-cCcccCCCCCCHHHHHHHHHhCCCCEEE-----eCCCC--CH-------HHHHHHHHcCC
Confidence            4556778889999999943 344443  35688999999988889754     35533  23       4555666667 


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHH
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~  121 (146)
                      +||+++|-+--+|.++.+.+++.++.
T Consensus       223 ~dgv~~g~a~~~~~~~~~~~~~~~~~  248 (254)
T TIGR00735       223 ADAALAASVFHYREITIGEVKEYLAE  248 (254)
T ss_pred             cceeeEhHHHhCCCCCHHHHHHHHHH
Confidence            99999999988999999988888774

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=95.85  E-value=0.31  Score=39.34  Aligned_cols=109  Identities=12%  Similarity=0.105  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCC---CCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCccc----C-H----HHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALS---EGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVF----S-Q----AEKEIMAL   86 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~---~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y----s-~----~E~~~M~~   86 (146)
                      +.+..|.+.|.+.|||-....   .-.+++ ...-+++..+..+++|..+-.. . +.|.|    . +    .-++.+++
T Consensus        17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~-~-~~~~~~~~~~~~~~r~~~~~~~~~   94 (275)
T PRK09856         17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPE-T-NGYPYNMMLGDEHMRRESLDMIKL   94 (275)
T ss_pred             HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCc-c-cCcCccccCCCHHHHHHHHHHHHH
Confidence            567778999999999942110   001111 1334455555668888654332 2 22222    2 2    23568888


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCH--------HHHHHHHHHhC--CCCeEEe
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDI--------EFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~--------~~~~~Li~~a~--~~~vtFH  130 (146)
                      -|+.++.+|++-+|+........-+.        +.+++|.+.|.  |+.+.||
T Consensus        95 ~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE  148 (275)
T PRK09856         95 AMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILE  148 (275)
T ss_pred             HHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence            89999999999999976533221122        24777777776  5666665

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=95.80  E-value=0.071  Score=45.69  Aligned_cols=84  Identities=26%  Similarity=0.366  Sum_probs=67.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .++||=|+|++++..|.++|||-|=| +|+       |...++++.+..+++=++++-- .||          +=.+.|.
T Consensus       189 ~kIEVEvesle~~~eAl~agaDiImL-DNm-------~~e~~~~av~~l~~~~~~~lEa-SGg----------It~~ni~  249 (280)
T COG0157         189 KKIEVEVESLEEAEEALEAGADIIML-DNM-------SPEELKEAVKLLGLAGRALLEA-SGG----------ITLENIR  249 (280)
T ss_pred             ceEEEEcCCHHHHHHHHHcCCCEEEe-cCC-------CHHHHHHHHHHhccCCceEEEE-eCC----------CCHHHHH
Confidence            35899999999999999999998855 554       3477888887766666888888 666          2236789


Q ss_pred             HHHHcCCCEEEEeeecCCCC-cCH
Q psy7930          90 QFVESGADGFVIGALTGEQE-IDI  112 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~-iD~  112 (146)
                      .+.+.|+|-|..|+||-.-. +|.
T Consensus       250 ~yA~tGVD~IS~galths~~~lDi  273 (280)
T COG0157         250 EYAETGVDVISVGALTHSAPALDI  273 (280)
T ss_pred             HHhhcCCCEEEeCccccCCcccce
Confidence            99999999999999997654 553

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=95.76  E-value=0.13  Score=41.54  Aligned_cols=91  Identities=22%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      -.+..+-+..+.+.|++.|.+-. ....|+  -+...+++++++..++||.+     -||=+  |.       +|+..+.
T Consensus       148 ~~~~~~~~~~l~~~G~d~i~v~~-i~~~g~~~g~~~~~i~~i~~~~~~pvia-----~GGi~--~~-------~di~~~l  212 (243)
T cd04731         148 GLDAVEWAKEVEELGAGEILLTS-MDRDGTKKGYDLELIRAVSSAVNIPVIA-----SGGAG--KP-------EHFVEAF  212 (243)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEec-cCCCCCCCCCCHHHHHHHHhhCCCCEEE-----eCCCC--CH-------HHHHHHH
Confidence            34455677889999999999865 223332  25678899999888899754     35522  23       4566666


Q ss_pred             Hc-CCCEEEEeeecCCCCcCHHHHHHHHH
Q psy7930          93 ES-GADGFVIGALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        93 ~~-GadG~VfG~L~~dg~iD~~~~~~Li~  120 (146)
                      +. |+||+++|-.--+|.++...+++++.
T Consensus       213 ~~~g~dgv~vg~al~~~~~~~~~~~~~~~  241 (243)
T cd04731         213 EEGGADAALAASIFHFGEYTIAELKEYLA  241 (243)
T ss_pred             HhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence            65 99999999887789999887666543

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd04732 HisA HisA

Probab=95.76  E-value=0.32  Score=38.53  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=68.9

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCccc------CHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVF------SQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Y------s~~E~~~M~~dI   88 (146)
                      +.|++++..+.+.|||++=+-+.+.     .+..+++++.+..+- +|.+-|-- +.|.+..      ++.+..   +=+
T Consensus        82 I~~~e~~~~~~~~Gad~vvigs~~l-----~dp~~~~~i~~~~g~~~i~~sid~-~~~~~~~~~~~~~~~~~~~---~~~  152 (234)
T cd04732          82 IRSLEDIERLLDLGVSRVIIGTAAV-----KNPELVKELLKEYGGERIVVGLDA-KDGKVATKGWLETSEVSLE---ELA  152 (234)
T ss_pred             cCCHHHHHHHHHcCCCEEEECchHH-----hChHHHHHHHHHcCCceEEEEEEe-eCCEEEECCCeeecCCCHH---HHH
Confidence            4678999999999999997766542     356778888877643 55554433 3322211      111111   225


Q ss_pred             HHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          89 HQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      +.+.+.|++++++.-++.+|.   .|.+.++++.+.. +.|+..
T Consensus       153 ~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~-~ipvi~  195 (234)
T cd04732         153 KRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT-GIPVIA  195 (234)
T ss_pred             HHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc-CCCEEE
Confidence            667889999999998887753   7899999988765 355543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.71  E-value=0.057  Score=46.31  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=56.5

Q ss_pred             EecCHHHHHHHHHcCCCEEEe-------cC-CCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLEL-------CA-ALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIEL-------c~-~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .+.|.+.+..+.+.|||-|-.       |. ....|+-.|...++..+.+..   ++||.    +  .|+..+.      
T Consensus       142 ~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI----A--~GGI~~~------  209 (325)
T cd00381         142 NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI----A--DGGIRTS------  209 (325)
T ss_pred             CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE----e--cCCCCCH------
Confidence            368889999999999999986       32 233456678888888777654   58864    5  3445544      


Q ss_pred             HHHHHHHHHHcCCCEEEEeee
Q psy7930          84 MALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L  104 (146)
                        .||..+.++||+++.+|=+
T Consensus       210 --~di~kAla~GA~~VmiGt~  228 (325)
T cd00381         210 --GDIVKALAAGADAVMLGSL  228 (325)
T ss_pred             --HHHHHHHHcCCCEEEecch
Confidence              6888888999999999743

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.67  E-value=0.096  Score=43.43  Aligned_cols=81  Identities=25%  Similarity=0.350  Sum_probs=52.8

Q ss_pred             ceeEEEecCHHH----HHHHHHcCCCEEEecCC---CCCC----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          10 TTLEVCVDSVAS----ALAAVRGGADRLELCAA---LSEG----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~---l~~G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      +++-++..+.++    |..+++.|+|-|||+-.   ...+    |-+|.  ..+++.+++.+++||.|=|+| ..     
T Consensus        92 ~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-~~-----  165 (296)
T cd04740          92 VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-NV-----  165 (296)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-Cc-----
Confidence            456677766655    44556679999999632   1111    22332  246777777779999888888 21     


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                           +.+.+-++.+.++|+|++++
T Consensus       166 -----~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         166 -----TDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             -----hhHHHHHHHHHHcCCCEEEE
Confidence                 12444456788999999976

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.64  E-value=0.17  Score=39.23  Aligned_cols=82  Identities=23%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             ceeE-EEecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLE-VCVDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lE-vcv~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +.++ ....|.+++..+.+.|+|-+=+.-..  ...|...+...++++++..++|+.+     -|| -  |.       +
T Consensus       106 ~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-----~GG-I--~~-------~  170 (202)
T cd04726         106 VQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAV-----AGG-I--TP-------D  170 (202)
T ss_pred             EEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEE-----ECC-c--CH-------H
Confidence            4455 67789999999999999987773211  1222345677888887765666644     233 1  21       3


Q ss_pred             HHHHHHHcCCCEEEEee-ecC
Q psy7930          87 DCHQFVESGADGFVIGA-LTG  106 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~-L~~  106 (146)
                      ++..+.+.|||++|+|= |..
T Consensus       171 ~i~~~~~~Gad~vvvGsai~~  191 (202)
T cd04726         171 TLPEFKKAGADIVIVGRAITG  191 (202)
T ss_pred             HHHHHHhcCCCEEEEeehhcC
Confidence            68899999999999995 443

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=95.57  E-value=0.58  Score=37.98  Aligned_cols=112  Identities=13%  Similarity=0.014  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC---C--CCCCC-HHHHHHHHhhCCCcEEEEEccC-CCCCcccC-----HHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSE---G--GLTPT-LGLYRVIKRLVLVPVFVMIRVR-AGFDFVFS-----QAEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~---G--GlTPS-~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys-----~~E~~~M~~d   87 (146)
                      +.+..+.+.|.+-|||...-..   .  +.+|. ...++...+..++.|..+.-.. ..-+|.-+     +..++.+++-
T Consensus        25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  104 (283)
T PRK13209         25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKA  104 (283)
T ss_pred             HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHH
Confidence            4566778999999999632100   1  12331 3345555556788887654220 11122222     2346678899


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          88 CHQFVESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      |+.++++|++-++++--+..-..+        .+.+++|.+.|+  |+.+.+|-
T Consensus       105 i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~  158 (283)
T PRK13209        105 IQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI  158 (283)
T ss_pred             HHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence            999999999999886432111122        446677888775  67777764

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.51  E-value=0.098  Score=44.88  Aligned_cols=82  Identities=27%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=|- |+       |+..++++.+..+-  .+.|-- .||          +=.+.|+
T Consensus       198 ~kIeVEv~tleea~~a~~agaDiImLD-nm-------spe~l~~av~~~~~--~~~lea-SGG----------I~~~ni~  256 (290)
T PRK06559        198 KMVEVEVESLAAAEEAAAAGADIIMLD-NM-------SLEQIEQAITLIAG--RSRIEC-SGN----------IDMTTIS  256 (290)
T ss_pred             CeEEEECCCHHHHHHHHHcCCCEEEEC-CC-------CHHHHHHHHHHhcC--ceEEEE-ECC----------CCHHHHH
Confidence            358888899999999999999999664 33       56677777765432  345555 455          2236788


Q ss_pred             HHHHcCCCEEEEeeecC-CCCcCH
Q psy7930          90 QFVESGADGFVIGALTG-EQEIDI  112 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~-dg~iD~  112 (146)
                      .+.+.|+|.++.|+|+- -..+|.
T Consensus       257 ~yA~tGVD~Is~galthsa~~~Di  280 (290)
T PRK06559        257 RFRGLAIDYVSSGSLTHSAKSLDF  280 (290)
T ss_pred             HHHhcCCCEEEeCccccCCcccce
Confidence            89999999999999997 445665

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.47  E-value=0.17  Score=42.10  Aligned_cols=80  Identities=19%  Similarity=0.186  Sum_probs=55.0

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .=|++.|.+++..|.+.||+-|=++. -...-..|......++.+...  +|+..   =  +| . .|.       +|++
T Consensus       163 ~lvevh~~~E~~~A~~~gadiIgin~-rdl~~~~~d~~~~~~l~~~~p~~~~vIa---e--gG-I-~t~-------ed~~  227 (260)
T PRK00278        163 VLVEVHDEEELERALKLGAPLIGINN-RNLKTFEVDLETTERLAPLIPSDRLVVS---E--SG-I-FTP-------EDLK  227 (260)
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEECC-CCcccccCCHHHHHHHHHhCCCCCEEEE---E--eC-C-CCH-------HHHH
Confidence            33567799999999999999988763 334455677888887777542  22222   2  23 1 122       6788


Q ss_pred             HHHHcCCCEEEEe-eecC
Q psy7930          90 QFVESGADGFVIG-ALTG  106 (146)
Q Consensus        90 ~~~~~GadG~VfG-~L~~  106 (146)
                      .++++|+|||++| .++.
T Consensus       228 ~~~~~Gad~vlVGsaI~~  245 (260)
T PRK00278        228 RLAKAGADAVLVGESLMR  245 (260)
T ss_pred             HHHHcCCCEEEECHHHcC
Confidence            8999999999998 3443

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.44  E-value=0.21  Score=41.49  Aligned_cols=98  Identities=24%  Similarity=0.263  Sum_probs=71.5

Q ss_pred             ceeEEEecCHH------------HHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          10 TTLEVCVDSVA------------SALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        10 ~~lEvcv~s~~------------~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      ++-|+..-|+.            =|...+++||+=|-....- ..||   |+..++.+++.+++||.   |.    ||.-
T Consensus        52 vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g---~~~~l~~v~~~v~iPvl---~k----dfi~  121 (260)
T PRK00278         52 VIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQG---SLEYLRAARAAVSLPVL---RK----DFII  121 (260)
T ss_pred             EEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCC---CHHHHHHHHHhcCCCEE---ee----eecC
Confidence            46688776654            3677889999999665432 2233   28999999999999986   34    5877


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      ++.+       |..++++|||++.+.+=.    ++.+.+++|++.|+.+...
T Consensus       122 ~~~q-------i~~a~~~GAD~VlLi~~~----l~~~~l~~li~~a~~lGl~  162 (260)
T PRK00278        122 DPYQ-------IYEARAAGADAILLIVAA----LDDEQLKELLDYAHSLGLD  162 (260)
T ss_pred             CHHH-------HHHHHHcCCCEEEEEecc----CCHHHHHHHHHHHHHcCCe
Confidence            7553       677899999999998633    3457999999999854433

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=95.43  E-value=0.098  Score=44.64  Aligned_cols=84  Identities=20%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ..+||=++|++++..|.+.|||.|-| +++       |...++++.+..+ .--++.|-- .|| =         =.+.|
T Consensus       190 ~kIeVEv~tleqa~ea~~agaDiI~L-Dn~-------~~e~l~~av~~~~~~~~~~~lea-SGG-I---------~~~ni  250 (284)
T PRK06096        190 KKIVVEADTPKEAIAALRAQPDVLQL-DKF-------SPQQATEIAQIAPSLAPHCTLSL-AGG-I---------NLNTL  250 (284)
T ss_pred             CCEEEECCCHHHHHHHHHcCCCEEEE-CCC-------CHHHHHHHHHHhhccCCCeEEEE-ECC-C---------CHHHH
Confidence            35888899999999999999999988 332       5567777766432 111345555 455 2         24778


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcCH
Q psy7930          89 HQFVESGADGFVIGALTGEQEIDI  112 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD~  112 (146)
                      +.+.+.|+|.++.|+|+....+|.
T Consensus       251 ~~yA~tGvD~Is~gal~~a~~~Di  274 (284)
T PRK06096        251 KNYADCGIRLFITSAPYYAAPADI  274 (284)
T ss_pred             HHHHhcCCCEEEECccccCCCcCe
Confidence            999999999999999987666664

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=95.37  E-value=0.18  Score=41.54  Aligned_cols=54  Identities=24%  Similarity=0.341  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930          45 TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        45 TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      +|...+++...+..++|++...-|   |.  | ++|++.+.   +.+++.|++|+|||.+..+
T Consensus        44 ~~~~~~~~~qA~algiPl~~~~~~---~~--~-e~~~~~l~---~~l~~~gv~~vv~GdI~s~   97 (222)
T TIGR00289        44 SPNLHLTDLVAEAVGIPLIKLYTS---GE--E-EKEVEDLA---GQLGELDVEALCIGAIESN   97 (222)
T ss_pred             cCCHHHHHHHHHHcCCCeEEEEcC---Cc--h-hHHHHHHH---HHHHHcCCCEEEECccccH
Confidence            677889988889999998555444   21  3 55555554   4457789999999999754

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=95.36  E-value=0.22  Score=39.69  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=52.2

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecC-CCCC---CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCA-ALSE---GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~-~l~~---GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +.+.|.+++..+.+.|+|-|-... ++..   .-..+...+++++++.+++||.+.     || .. +.       +|+.
T Consensus       124 ~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~-----GG-I~-t~-------~~~~  189 (221)
T PRK01130        124 ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAE-----GR-IN-TP-------EQAK  189 (221)
T ss_pred             EeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEE-----CC-CC-CH-------HHHH
Confidence            456789999999999999874421 1110   112334788999998888997653     33 21 22       6777


Q ss_pred             HHHHcCCCEEEEe
Q psy7930          90 QFVESGADGFVIG  102 (146)
Q Consensus        90 ~~~~~GadG~VfG  102 (146)
                      .+.++|+|||.+|
T Consensus       190 ~~l~~GadgV~iG  202 (221)
T PRK01130        190 KALELGAHAVVVG  202 (221)
T ss_pred             HHHHCCCCEEEEc
Confidence            7888999999999

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.35  E-value=0.11  Score=44.65  Aligned_cols=77  Identities=27%  Similarity=0.350  Sum_probs=59.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=|- |+       |+..++++.+..+-  ++.|-- .|| =.         .+.|.
T Consensus       206 ~kIeVEvetleea~eA~~aGaDiImLD-nm-------spe~l~~av~~~~~--~~~lEa-SGG-It---------~~ni~  264 (294)
T PRK06978        206 VPVQIEVETLAQLETALAHGAQSVLLD-NF-------TLDMMREAVRVTAG--RAVLEV-SGG-VN---------FDTVR  264 (294)
T ss_pred             CcEEEEcCCHHHHHHHHHcCCCEEEEC-CC-------CHHHHHHHHHhhcC--CeEEEE-ECC-CC---------HHHHH
Confidence            469999999999999999999999654 43       55677777765432  445666 455 22         46788


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|.++.|+|+-+
T Consensus       265 ~yA~tGVD~IS~galths  282 (294)
T PRK06978        265 AFAETGVDRISIGALTKD  282 (294)
T ss_pred             HHHhcCCCEEEeCccccC
Confidence            999999999999999975

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=95.32  E-value=0.21  Score=39.72  Aligned_cols=107  Identities=15%  Similarity=0.213  Sum_probs=68.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCH-HHH--HHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQ-AEK--EIMALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~-~E~--~~M~~dI~~~   91 (146)
                      +.+.+++..+.+.||+++=|-+.+.     .+...++++.+..+ -+|.+-|-. |.|...... .+.  .--.+=++.+
T Consensus        81 I~~~ed~~~~~~~Ga~~vvlgs~~l-----~d~~~~~~~~~~~g~~~i~~sid~-~~~~v~~~g~~~~~~~~~~~~~~~~  154 (230)
T TIGR00007        81 IRSLEDVEKLLDLGVDRVIIGTAAV-----ENPDLVKELLKEYGPERIVVSLDA-RGGEVAVKGWLEKSEVSLEELAKRL  154 (230)
T ss_pred             cCCHHHHHHHHHcCCCEEEEChHHh-----hCHHHHHHHHHHhCCCcEEEEEEE-ECCEEEEcCCcccCCCCHHHHHHHH
Confidence            4688999999999999996554332     24566777777664 345555555 444211100 000  0011234567


Q ss_pred             HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      .++|++++++.-++.+|.   .|.+.++++.+.. +.|++.
T Consensus       155 ~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~-~ipvia  194 (230)
T TIGR00007       155 EELGLEGIIYTDISRDGTLSGPNFELTKELVKAV-NVPVIA  194 (230)
T ss_pred             HhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence            789999999999988863   8899999988763 455543

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=95.27  E-value=0.08  Score=43.14  Aligned_cols=74  Identities=22%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             EEEecCHHHHHHHHHcCCCEEEec-CC---CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          13 EVCVDSVASALAAVRGGADRLELC-AA---LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        13 Evcv~s~~~a~~A~~~GAdRIELc-~~---l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      =.=|.|++++++|.+.|+|-|--- +.   ...| ..|.+.+++++++. ++||  +.    .|.+ +|++       +.
T Consensus        96 MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~-~~pv--Ia----EGri-~tpe-------~a  159 (192)
T PF04131_consen   96 MADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA-DVPV--IA----EGRI-HTPE-------QA  159 (192)
T ss_dssp             EEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT-TSEE--EE----ESS---SHH-------HH
T ss_pred             eeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC-CCcE--ee----cCCC-CCHH-------HH
Confidence            344689999999999999988543 22   2334 66889999998875 7883  22    2333 3443       45


Q ss_pred             HHHHHcCCCEEEEe
Q psy7930          89 HQFVESGADGFVIG  102 (146)
Q Consensus        89 ~~~~~~GadG~VfG  102 (146)
                      ..+.++||..||+|
T Consensus       160 ~~al~~GA~aVVVG  173 (192)
T PF04131_consen  160 AKALELGAHAVVVG  173 (192)
T ss_dssp             HHHHHTT-SEEEE-
T ss_pred             HHHHhcCCeEEEEC
Confidence            66788999999999

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.26  E-value=0.3  Score=39.11  Aligned_cols=87  Identities=26%  Similarity=0.295  Sum_probs=63.4

Q ss_pred             HHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-+..+.+.|++.+.+-+ +....|.......++.+.+..++|+.+      +|+.. |.       +|++.+.++|||+
T Consensus        36 e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v------~GGi~-~~-------~~~~~~~~~Ga~~  101 (241)
T PRK13585         36 EVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQL------GGGIR-SA-------EDAASLLDLGVDR  101 (241)
T ss_pred             HHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEE------cCCcC-CH-------HHHHHHHHcCCCE
Confidence            556677789999998885 334557778889999999988888865      23233 22       5567777899999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +++|.-...   |.+.++++.+..+
T Consensus       102 v~iGs~~~~---~~~~~~~i~~~~g  123 (241)
T PRK13585        102 VILGTAAVE---NPEIVRELSEEFG  123 (241)
T ss_pred             EEEChHHhh---ChHHHHHHHHHhC
Confidence            999975532   5567777777764

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=95.24  E-value=0.3  Score=40.85  Aligned_cols=94  Identities=24%  Similarity=0.345  Sum_probs=63.4

Q ss_pred             HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHH-hhCCCcEEEEE--ccCCCCCcccC
Q psy7930          20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIK-RLVLVPVFVMI--RVRAGFDFVFS   77 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~-~~~~ipv~vMI--RP~R~gdF~Ys   77 (146)
                      +-+....++|||-|||-=   +.              -..|+|.  .+..+++++ +..++|+.+|-  .|    =|.|.
T Consensus        30 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~----i~~~G  105 (258)
T PRK13111         30 EIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNP----IFQYG  105 (258)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccH----HhhcC
Confidence            345667889999999973   21              1245554  466777777 45689998887  44    25666


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      -+.|      ++.++++|+||+.+    +|  +-.+..+++++.++  ++..++
T Consensus       106 ~e~f------~~~~~~aGvdGvii----pD--Lp~ee~~~~~~~~~~~gl~~I~  147 (258)
T PRK13111        106 VERF------AADAAEAGVDGLII----PD--LPPEEAEELRAAAKKHGLDLIF  147 (258)
T ss_pred             HHHH------HHHHHHcCCcEEEE----CC--CCHHHHHHHHHHHHHcCCcEEE
Confidence            5544      56788999999998    44  34467777777776  454443

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.21  E-value=0.13  Score=43.82  Aligned_cols=82  Identities=26%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.+.|||.|=|- |       .|...++++.+..+-..  .|-- .||          +=.+.|+
T Consensus       195 ~kIeVEv~tleea~ea~~~gaDiI~LD-n-------~s~e~l~~av~~~~~~~--~lea-SGG----------I~~~ni~  253 (281)
T PRK06106        195 VKIEVEVDTLDQLEEALELGVDAVLLD-N-------MTPDTLREAVAIVAGRA--ITEA-SGR----------ITPETAP  253 (281)
T ss_pred             CcEEEEeCCHHHHHHHHHcCCCEEEeC-C-------CCHHHHHHHHHHhCCCc--eEEE-ECC----------CCHHHHH
Confidence            468999999999999999999999654 4       36688888877553211  1344 344          1236788


Q ss_pred             HHHHcCCCEEEEeeecCCC-CcCH
Q psy7930          90 QFVESGADGFVIGALTGEQ-EIDI  112 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg-~iD~  112 (146)
                      .+.+.|+|.|+.|.|+-+. .+|.
T Consensus       254 ~yA~tGVD~Is~Galthsa~~~Di  277 (281)
T PRK06106        254 AIAASGVDLISVGWLTHSAPVLDI  277 (281)
T ss_pred             HHHhcCCCEEEeChhhcCCCcccc
Confidence            8999999999999999743 3553

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=95.20  E-value=0.23  Score=38.58  Aligned_cols=76  Identities=29%  Similarity=0.392  Sum_probs=58.4

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCC---CCCCCCC-CHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAAL---SEGGLTP-TLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l---~~GGlTP-S~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~   82 (146)
                      ..++=+-+-|.+++..|.+.|+|-+=|--=.   +--|.+| ....++++++...+||+++  |.|              
T Consensus        95 ~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~~--------------  160 (180)
T PF02581_consen   95 DKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGITP--------------  160 (180)
T ss_dssp             TSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS--T--------------
T ss_pred             ceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCCH--------------
Confidence            4578889999999999999999999876521   2334444 4778888899999999998  444              


Q ss_pred             HHHHHHHHHHHcCCCEEEE
Q psy7930          83 IMALDCHQFVESGADGFVI  101 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~Vf  101 (146)
                         +++..++++|++|+.+
T Consensus       161 ---~~i~~l~~~Ga~gvAv  176 (180)
T PF02581_consen  161 ---ENIPELREAGADGVAV  176 (180)
T ss_dssp             ---TTHHHHHHTT-SEEEE
T ss_pred             ---HHHHHHHHcCCCEEEE
Confidence               6788899999999975

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=95.16  E-value=0.17  Score=42.53  Aligned_cols=74  Identities=26%  Similarity=0.275  Sum_probs=54.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +.|.+++..|++.|||-|-+..+  -...+-.|+...+.++++.+  ++||..   -  || +...        .|+..+
T Consensus       180 v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia---~--GG-I~~~--------~d~~ka  245 (299)
T cd02809         180 ILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL---D--GG-IRRG--------TDVLKA  245 (299)
T ss_pred             cCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE---e--CC-CCCH--------HHHHHH
Confidence            38899999999999999998643  12223457788888888876  477643   2  44 4433        677777


Q ss_pred             HHcCCCEEEEee
Q psy7930          92 VESGADGFVIGA  103 (146)
Q Consensus        92 ~~~GadG~VfG~  103 (146)
                      ..+|||+|.+|=
T Consensus       246 l~lGAd~V~ig~  257 (299)
T cd02809         246 LALGADAVLIGR  257 (299)
T ss_pred             HHcCCCEEEEcH
Confidence            789999999994

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=95.14  E-value=0.13  Score=43.81  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=61.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ..+||=++|++++..|.+.|||.|-|-      ..  |...++++.+... ..-.+.|-- -||          +=.+.|
T Consensus       189 ~kIeVEv~tleea~ea~~~GaDiI~lD------n~--~~e~l~~~v~~l~~~~~~~~lea-sGG----------I~~~ni  249 (277)
T TIGR01334       189 RKITVEADTIEQALTVLQASPDILQLD------KF--TPQQLHHLHERLKFFDHIPTLAA-AGG----------INPENI  249 (277)
T ss_pred             CCEEEECCCHHHHHHHHHcCcCEEEEC------CC--CHHHHHHHHHHHhccCCCEEEEE-ECC----------CCHHHH
Confidence            458888899999999999999999886      33  4455665555441 222445555 455          223678


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcCH
Q psy7930          89 HQFVESGADGFVIGALTGEQEIDI  112 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD~  112 (146)
                      ..+.+.|+|.++.|+|+.-...|.
T Consensus       250 ~~ya~~GvD~is~gal~~a~~~Di  273 (277)
T TIGR01334       250 ADYIEAGIDLFITSAPYYAAPCDI  273 (277)
T ss_pred             HHHHhcCCCEEEeCcceecCccce
Confidence            889999999999999997777765

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=95.12  E-value=0.23  Score=40.04  Aligned_cols=104  Identities=22%  Similarity=0.292  Sum_probs=68.6

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-----CcEEEEEccCCCCCccc-------CHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVF-------SQAEKEI   83 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Y-------s~~E~~~   83 (146)
                      +.|.+++....+.||+++-+.+.+..     +..+++++.+..+     +++-+.+|+ -.+..++       ++.+   
T Consensus        80 I~s~~d~~~~l~~G~~~v~ig~~~~~-----~p~~~~~i~~~~~~~~i~~~ld~k~~~-~~~~~v~~~~~~~~~~~~---  150 (243)
T cd04731          80 IRSLEDARRLLRAGADKVSINSAAVE-----NPELIREIAKRFGSQCVVVSIDAKRRG-DGGYEVYTHGGRKPTGLD---  150 (243)
T ss_pred             CCCHHHHHHHHHcCCceEEECchhhh-----ChHHHHHHHHHcCCCCEEEEEEeeecC-CCceEEEEcCCceecCCC---
Confidence            45789999999999999988865443     4577777776552     333333333 1011222       2222   


Q ss_pred             HHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          84 MALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ..+-++.+.++|+|.+++.-.+.+|+   .|.+.++++.+.. ++|+..
T Consensus       151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~-~~pvia  198 (243)
T cd04731         151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV-NIPVIA  198 (243)
T ss_pred             HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC-CCCEEE
Confidence            23455777899999999988887653   7888888887764 566553

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=95.10  E-value=0.14  Score=42.96  Aligned_cols=80  Identities=23%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             eeEEEec-CHHH----HHHHHHcCCCEEEecC---CC---CCCC----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930          11 TLEVCVD-SVAS----ALAAVRGGADRLELCA---AL---SEGG----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFD   73 (146)
Q Consensus        11 ~lEvcv~-s~~~----a~~A~~~GAdRIELc~---~l---~~GG----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gd   73 (146)
                      +.-+... +.++    +..+++.|||-|||+-   +.   ..+|    -.|  -..+++.+++.+++||.|=||| .   
T Consensus       103 i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~---  178 (299)
T cd02940         103 IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-N---  178 (299)
T ss_pred             EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-C---
Confidence            4444444 5544    3445557999999943   32   1111    223  3456677777778999999999 2   


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +       ..+.+.++.+.+.|+|||++
T Consensus       179 ~-------~~~~~~a~~~~~~Gadgi~~  199 (299)
T cd02940         179 I-------TDIREIARAAKEGGADGVSA  199 (299)
T ss_pred             c-------hhHHHHHHHHHHcCCCEEEE
Confidence            2       12455567788999999994

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.09  E-value=0.14  Score=46.72  Aligned_cols=75  Identities=17%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             ecCHHHHHHHHHcCCCEEEec-------CCCCCCC-CCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELC-------AALSEGG-LTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc-------~~l~~GG-lTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      |.+.+++..|++.|||-|=..       ..-..+| -.|   +...+.++.+..++||..      .|++.|+       
T Consensus       297 v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIa------dGGI~~~-------  363 (505)
T PLN02274        297 VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIA------DGGISNS-------  363 (505)
T ss_pred             CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEE------eCCCCCH-------
Confidence            788999999999999998663       2211111 112   333455666666788643      4568877       


Q ss_pred             HHHHHHHHHcCCCEEEEeee
Q psy7930          85 ALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L  104 (146)
                       .||..+..+||+++++|=+
T Consensus       364 -~di~kAla~GA~~V~vGs~  382 (505)
T PLN02274        364 -GHIVKALTLGASTVMMGSF  382 (505)
T ss_pred             -HHHHHHHHcCCCEEEEchh
Confidence             7899999999999999954

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=95.05  E-value=0.073  Score=45.86  Aligned_cols=75  Identities=24%  Similarity=0.367  Sum_probs=53.7

Q ss_pred             EecCHHHHHHHHHcCCCEEEec-------------------------CCCCCC-------CCCCCHHHHHHHHhhCCCcE
Q psy7930          15 CVDSVASALAAVRGGADRLELC-------------------------AALSEG-------GLTPTLGLYRVIKRLVLVPV   62 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc-------------------------~~l~~G-------GlTPS~g~i~~~~~~~~ipv   62 (146)
                      =+.|+++++.|.+.|||-|=--                         ++|..-       =+-|.+.+++++++..++||
T Consensus       127 d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPV  206 (293)
T PRK04180        127 GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPV  206 (293)
T ss_pred             cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCE
Confidence            3789999999999999988654                         111110       13478899999999889997


Q ss_pred             E-EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          63 F-VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        63 ~-vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      . +.+    ||  .+|+       +|+..+.++|++||++|
T Consensus       207 V~~Ae----GG--I~TP-------edaa~vme~GAdgVaVG  234 (293)
T PRK04180        207 VNFAA----GG--IATP-------ADAALMMQLGADGVFVG  234 (293)
T ss_pred             EEEEe----CC--CCCH-------HHHHHHHHhCCCEEEEc
Confidence            5 222    44  2344       45666778999999987

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=95.04  E-value=0.46  Score=40.29  Aligned_cols=93  Identities=14%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      .+-|..=++.||+++.+.+=  -||..-...+++++++ +++||.+      ||+.. +        ++++.+.++||+-
T Consensus        46 ~~~A~~~~~~Ga~~lHvVDL--dgg~~~n~~~i~~i~~-~~~~vqv------GGGIR-~--------e~i~~~l~~Ga~r  107 (262)
T PLN02446         46 AEFAEMYKRDGLTGGHVIML--GADDASLAAALEALRA-YPGGLQV------GGGVN-S--------ENAMSYLDAGASH  107 (262)
T ss_pred             HHHHHHHHHCCCCEEEEEEC--CCCCcccHHHHHHHHh-CCCCEEE------eCCcc-H--------HHHHHHHHcCCCE
Confidence            45666667789999999973  2233334778888888 7778765      66553 1        6788999999999


Q ss_pred             EEEeeec-CCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          99 FVIGALT-GEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        99 ~VfG~L~-~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ||+|-.- .|+.||.+.++++++.-++=.++.
T Consensus       108 ViigT~Av~~~~~~p~~v~~~~~~~G~~~Ivv  139 (262)
T PLN02446        108 VIVTSYVFRDGQIDLERLKDLVRLVGKQRLVL  139 (262)
T ss_pred             EEEchHHHhCCCCCHHHHHHHHHHhCCCCEEE
Confidence            9999432 368999999999999886555544

>PRK01060 endonuclease IV; Provisional

Probab=95.03  E-value=0.57  Score=38.00  Aligned_cols=82  Identities=9%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCCEEEecCC-C---CCCCCCC-CHHHHHHHHhhCCCcEE--EEEccCCCCCcc-----cCHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAA-L---SEGGLTP-TLGLYRVIKRLVLVPVF--VMIRVRAGFDFV-----FSQAEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~-l---~~GGlTP-S~g~i~~~~~~~~ipv~--vMIRP~R~gdF~-----Ys~~E~~~M~~d   87 (146)
                      +.+..+.+.|.|.+||--. .   ..+-.|| ....+++..+..++.+.  ++--| -..++.     +-+.-++.+++.
T Consensus        16 ~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~-~~~nl~~~d~~~r~~s~~~~~~~   94 (281)
T PRK01060         16 GAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAP-YLINLGNPNKEILEKSRDFLIQE   94 (281)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecc-eEecCCCCCHHHHHHHHHHHHHH
Confidence            4457788999999999632 1   1112233 23445555555566631  11123 112222     223447789999


Q ss_pred             HHHHHHcCCCEEEEe
Q psy7930          88 CHQFVESGADGFVIG  102 (146)
Q Consensus        88 I~~~~~~GadG~VfG  102 (146)
                      |+.++++|+..+|+-
T Consensus        95 i~~A~~lga~~vv~h  109 (281)
T PRK01060         95 IERCAALGAKLLVFH  109 (281)
T ss_pred             HHHHHHcCCCEEEEc
Confidence            999999999999984

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=94.98  E-value=0.16  Score=39.78  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +=+.|++++..|.+.|||-|-+=.    .... ....++.+++.. ++|+.    | -||=   +.       +++..+.
T Consensus       102 ~gv~t~~e~~~A~~~Gad~i~~~p----~~~~-g~~~~~~l~~~~~~~p~~----a-~GGI---~~-------~n~~~~~  161 (190)
T cd00452         102 PGVATPTEIMQALELGADIVKLFP----AEAV-GPAYIKALKGPFPQVRFM----P-TGGV---SL-------DNAAEWL  161 (190)
T ss_pred             CCcCCHHHHHHHHHCCCCEEEEcC----Cccc-CHHHHHHHHhhCCCCeEE----E-eCCC---CH-------HHHHHHH
Confidence            344499999999999999999831    1222 566788877655 46654    4 5662   22       6788899


Q ss_pred             HcCCCEEEEeeecC
Q psy7930          93 ESGADGFVIGALTG  106 (146)
Q Consensus        93 ~~GadG~VfG~L~~  106 (146)
                      +.|++++++|-+-.
T Consensus       162 ~~G~~~v~v~s~i~  175 (190)
T cd00452         162 AAGVVAVGGGSLLP  175 (190)
T ss_pred             HCCCEEEEEchhcc
Confidence            99999999997654

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=94.96  E-value=0.63  Score=39.96  Aligned_cols=115  Identities=24%  Similarity=0.290  Sum_probs=72.7

Q ss_pred             cceeEEEecCHHHHH----HHHHcCCCEEEecCCC-----CCC--C----CCC--CHHHHHHHHhhCCCcEEEEEccCCC
Q psy7930           9 KTTLEVCVDSVASAL----AAVRGGADRLELCAAL-----SEG--G----LTP--TLGLYRVIKRLVLVPVFVMIRVRAG   71 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~----~A~~~GAdRIELc~~l-----~~G--G----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~   71 (146)
                      .+.+-++-.|+++..    .+++.|+|-|||+.+-     .-+  |    -.|  ...+++.+++.+++||-|=||.  +
T Consensus        66 p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~--g  143 (333)
T PRK11815         66 PVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRI--G  143 (333)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEe--e
Confidence            467889999987644    4556799999999631     111  1    112  1246777777788999999998  3


Q ss_pred             CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC-----C-------CCcCHHHHHHHHHHhCCCCeE
Q psy7930          72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTG-----E-------QEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~-----d-------g~iD~~~~~~Li~~a~~~~vt  128 (146)
                      .+-.-+   .+.+.+=++.+.+.|+|.+.+-.=+.     .       +..|.+.++++.+.....|+.
T Consensus       144 ~~~~~t---~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI  209 (333)
T PRK11815        144 IDDQDS---YEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIE  209 (333)
T ss_pred             eCCCcC---HHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEE
Confidence            221111   22344446778899999998753211     1       237888888887765455554

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=94.94  E-value=0.82  Score=38.41  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=63.2

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      .+..+.+.|++-|+|.-+-...|-+.....++.+++.+++||.+=...        +       .++.+.+.++|+|+|+
T Consensus       134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~--------s-------~~~a~~a~~~G~d~I~  198 (299)
T cd02809         134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGIL--------T-------PEDALRAVDAGADGIV  198 (299)
T ss_pred             HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecC--------C-------HHHHHHHHHCCCCEEE
Confidence            455567789999999866555555578899999999989998765433        1       3568889999999999


Q ss_pred             Eee---ecC-CCCcCHHHHHHHHHHhC-CCCe
Q psy7930         101 IGA---LTG-EQEIDIEFIRQLKTIIG-DRPI  127 (146)
Q Consensus       101 fG~---L~~-dg~iD~~~~~~Li~~a~-~~~v  127 (146)
                      ++-   -.. .|..+.+.+.++.+... .+|+
T Consensus       199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipv  230 (299)
T cd02809         199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEV  230 (299)
T ss_pred             EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeE
Confidence            852   111 13345666666666553 3444

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=94.93  E-value=0.68  Score=37.75  Aligned_cols=111  Identities=14%  Similarity=0.042  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC---CCCCCCHHHHHHH---HhhCCCcEEEEEccCCCCCccc---CH----HHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSE---GGLTPTLGLYRVI---KRLVLVPVFVMIRVRAGFDFVF---SQ----AEKEIMAL   86 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~---GGlTPS~g~i~~~---~~~~~ipv~vMIRP~R~gdF~Y---s~----~E~~~M~~   86 (146)
                      +.+..|.+.|-+-|||--.-..   ..+.-+.+.++++   .+..+++|..|--. -.+.|..   ++    ..++.+++
T Consensus        20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~~~~~l~~~~~~~r~~~~~~~~~   98 (279)
T TIGR00542        20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLS-AHRRFPLGSKDKAVRQQGLEIMEK   98 (279)
T ss_pred             HHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecC-CCccCcCCCcCHHHHHHHHHHHHH
Confidence            5567889999999999522111   1122234444444   45568888766422 1222322   22    24566889


Q ss_pred             HHHHHHHcCCCEEEEeeecC-CCCcCH-------HHHHHHHHHhC--CCCeEEee
Q psy7930          87 DCHQFVESGADGFVIGALTG-EQEIDI-------EFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~-dg~iD~-------~~~~~Li~~a~--~~~vtFHR  131 (146)
                      -|+.++++|++-++|+.-.. .+.-+.       +.++++.+.|+  |+.+.+|.
T Consensus        99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~  153 (279)
T TIGR00542        99 AIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI  153 (279)
T ss_pred             HHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence            99999999999998874221 122222       56677777776  67777774

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=94.85  E-value=0.24  Score=38.22  Aligned_cols=47  Identities=17%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC----HHHHHHHHhhCCCc--EEEEEcc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT----LGLYRVIKRLVLVP--VFVMIRV   68 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~ip--v~vMIRP   68 (146)
                      +.+..+.++|++.|+|-  ...|...|.    ...++++++..+.|  +++|+..
T Consensus        16 ~~~~~~~~~G~~~i~l~--~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d   68 (211)
T cd00429          16 EELKRLEEAGADWIHID--VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVEN   68 (211)
T ss_pred             HHHHHHHHcCCCEEEEe--cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCC
Confidence            56788999999999995  233444443    36788887765455  4566653

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=94.80  E-value=0.54  Score=39.69  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=69.3

Q ss_pred             ceeEEEecCHHHH----HHHHHcCCCEEEecCCCC------C-CCC----CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930          10 TTLEVCVDSVASA----LAAVRGGADRLELCAALS------E-GGL----TP--TLGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus        10 ~~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~------~-GGl----TP--S~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      +++-++..++++.    ..+++.|+|-|||+.+-.      . ||.    .|  ...+++.+++.+++||.|=||+  | 
T Consensus        65 ~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~--g-  141 (319)
T TIGR00737        65 ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI--G-  141 (319)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc--c-
Confidence            4588888888554    445668999999975421      1 231    22  1345667777778999888876  2 


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CCcCHHHHHHHHHHhCCCCeE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~vt  128 (146)
                       +.-+..+   ..+-++.+.+.|+|+|++-.-+..    |..|.+.++++.+..+ +|+.
T Consensus       142 -~~~~~~~---~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi  196 (319)
T TIGR00737       142 -WDDAHIN---AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVI  196 (319)
T ss_pred             -cCCCcch---HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEE
Confidence             2111111   234566788899999987543332    3567888777776553 4443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.78  E-value=0.24  Score=42.32  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=|- |+       |+..++++.+..+-  .+.|-- .||          +=.+.|.
T Consensus       194 ~kIeVEv~slee~~ea~~~gaDiImLD-n~-------s~e~l~~av~~~~~--~~~lea-SGg----------I~~~ni~  252 (281)
T PRK06543        194 THVEVEVDRLDQIEPVLAAGVDTIMLD-NF-------SLDDLREGVELVDG--RAIVEA-SGN----------VNLNTVG  252 (281)
T ss_pred             CcEEEEeCCHHHHHHHHhcCCCEEEEC-CC-------CHHHHHHHHHHhCC--CeEEEE-ECC----------CCHHHHH
Confidence            469999999999999999999999664 43       55677777665431  224555 455          2236788


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|.++.|.|+-+
T Consensus       253 ~yA~tGVD~Is~galths  270 (281)
T PRK06543        253 AIASTGVDVISVGALTHS  270 (281)
T ss_pred             HHHhcCCCEEEeCccccC
Confidence            899999999999999975

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.76  E-value=0.17  Score=43.26  Aligned_cols=84  Identities=23%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ..+||=|+|++++..|.+.|||.|=|- |++       +..++++.+.. ...-++.|-- .||          +=.+.|
T Consensus       200 ~kIeVEv~tl~ea~eal~~gaDiI~LD-nm~-------~e~vk~av~~~~~~~~~v~iea-SGG----------I~~~ni  260 (289)
T PRK07896        200 LPCEVEVDSLEQLDEVLAEGAELVLLD-NFP-------VWQTQEAVQRRDARAPTVLLES-SGG----------LTLDTA  260 (289)
T ss_pred             CCEEEEcCCHHHHHHHHHcCCCEEEeC-CCC-------HHHHHHHHHHHhccCCCEEEEE-ECC----------CCHHHH
Confidence            358888899999999999999999765 433       66777776543 1233445555 455          123678


Q ss_pred             HHHHHcCCCEEEEeeecCC-CCcCH
Q psy7930          89 HQFVESGADGFVIGALTGE-QEIDI  112 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~d-g~iD~  112 (146)
                      ..+.+.|+|.|++|.|+-+ ..+|.
T Consensus       261 ~~yA~tGvD~Is~galt~sa~~~Di  285 (289)
T PRK07896        261 AAYAETGVDYLAVGALTHSVPVLDI  285 (289)
T ss_pred             HHHHhcCCCEEEeChhhcCCCcccc
Confidence            8899999999999999974 34554

>PRK08999 hypothetical protein; Provisional

Probab=94.76  E-value=0.46  Score=39.51  Aligned_cols=75  Identities=19%  Similarity=0.166  Sum_probs=58.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~~   83 (146)
                      .++=+-+-|.+++..|.+.|||.|=+-.-.    ..++.......++.+++..++||+++  |.|               
T Consensus       227 ~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~---------------  291 (312)
T PRK08999        227 RWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGP---------------  291 (312)
T ss_pred             CEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCH---------------
Confidence            467788899999999999999999876532    22332224677888888889999987  444               


Q ss_pred             HHHHHHHHHHcCCCEEEE
Q psy7930          84 MALDCHQFVESGADGFVI  101 (146)
Q Consensus        84 M~~dI~~~~~~GadG~Vf  101 (146)
                        +++..++++|++||.+
T Consensus       292 --~~~~~~~~~g~~gva~  307 (312)
T PRK08999        292 --GDLEEAREHGAQGIAG  307 (312)
T ss_pred             --HHHHHHHHhCCCEEEE
Confidence              7788899999999864

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=94.76  E-value=0.47  Score=37.97  Aligned_cols=69  Identities=22%  Similarity=0.264  Sum_probs=44.5

Q ss_pred             HHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          23 LAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ....+.|.+.||+-..-...-.   .-....++.+++.. +.++.+|+|+ .              .++++.+++.|++.
T Consensus        26 ~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~-~--------------~~~i~~a~~~g~~~   90 (265)
T cd03174          26 EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN-R--------------EKGIERALEAGVDE   90 (265)
T ss_pred             HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC-c--------------hhhHHHHHhCCcCE
Confidence            3455779999998642111000   11245677777665 6889899988 3              56777888888877


Q ss_pred             EEEeeecC
Q psy7930          99 FVIGALTG  106 (146)
Q Consensus        99 ~VfG~L~~  106 (146)
                      +-+-.-..
T Consensus        91 i~i~~~~s   98 (265)
T cd03174          91 VRIFDSAS   98 (265)
T ss_pred             EEEEEecC
Confidence            76666444

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=94.67  E-value=0.23  Score=43.76  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +++|  -+.+++..|.+.|+|-|=+..+  =...+.-|+...+.++++.+++||.+.      |++...        .||
T Consensus       241 iKgV--~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d------GGIr~g--------~Dv  304 (361)
T cd04736         241 VKGI--VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLID------SGIRRG--------SDI  304 (361)
T ss_pred             EecC--CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe------CCCCCH--------HHH
Confidence            4665  6999999999999999988753  111222356888888888778776543      334443        688


Q ss_pred             HHHHHcCCCEEEEe
Q psy7930          89 HQFVESGADGFVIG  102 (146)
Q Consensus        89 ~~~~~~GadG~VfG  102 (146)
                      ..+..+||+.+.+|
T Consensus       305 ~KALaLGA~aV~iG  318 (361)
T cd04736         305 VKALALGANAVLLG  318 (361)
T ss_pred             HHHHHcCCCEEEEC
Confidence            89999999999998

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=94.62  E-value=0.47  Score=39.93  Aligned_cols=84  Identities=26%  Similarity=0.417  Sum_probs=60.7

Q ss_pred             HHHH-HHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          22 ALAA-VRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        22 a~~A-~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      +..| ++++||=|-+-.  ..-|-.|+...++++++.+++||.+      |++=.+         +-|..+.+. |||++
T Consensus       164 ~~~a~~~~~aDaviVtG--~~TG~~~~~~~l~~vr~~~~~PVlv------GSGvt~---------~Ni~~~l~~-ADG~I  225 (254)
T PF03437_consen  164 AKDAVERGGADAVIVTG--KATGEPPDPEKLKRVREAVPVPVLV------GSGVTP---------ENIAEYLSY-ADGAI  225 (254)
T ss_pred             HHHHHHhcCCCEEEECC--cccCCCCCHHHHHHHHhcCCCCEEE------ecCCCH---------HHHHHHHHh-CCEEE
Confidence            3344 688999886654  2347789999999999998888854      222222         234444443 99999


Q ss_pred             Ee-eecCCCC----cCHHHHHHHHHHhC
Q psy7930         101 IG-ALTGEQE----IDIEFIRQLKTIIG  123 (146)
Q Consensus       101 fG-~L~~dg~----iD~~~~~~Li~~a~  123 (146)
                      +| .++.||.    ||.++.++|++.++
T Consensus       226 VGS~~K~~G~~~n~VD~~Rv~~fm~~v~  253 (254)
T PF03437_consen  226 VGSYFKKDGKWENPVDPERVRRFMEAVK  253 (254)
T ss_pred             EeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence            99 4777775    99999999999875

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=94.57  E-value=0.38  Score=40.89  Aligned_cols=90  Identities=27%  Similarity=0.379  Sum_probs=67.4

Q ss_pred             CHHHHHH--HHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVASALA--AVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~a~~--A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      |++++..  .++++||-+=+-.  .--|.-|+...++.+++..++||.|      |-+-++         +.+..+.+. 
T Consensus       164 ~~~~~v~dtver~~aDaVI~tG--~~TG~~~d~~el~~a~~~~~~pvlv------GSGv~~---------eN~~~~l~~-  225 (263)
T COG0434         164 SLEEAVKDTVERGLADAVIVTG--SRTGSPPDLEELKLAKEAVDTPVLV------GSGVNP---------ENIEELLKI-  225 (263)
T ss_pred             CHHHHHHHHHHccCCCEEEEec--ccCCCCCCHHHHHHHHhccCCCEEE------ecCCCH---------HHHHHHHHH-
Confidence            5555443  6788999876654  3457889999999999999988855      222232         345555666 


Q ss_pred             CCEEEEe-eecCCC----CcCHHHHHHHHHHhCCC
Q psy7930          96 ADGFVIG-ALTGEQ----EIDIEFIRQLKTIIGDR  125 (146)
Q Consensus        96 adG~VfG-~L~~dg----~iD~~~~~~Li~~a~~~  125 (146)
                      +|||++| .|+.+|    .||.++.++++++++..
T Consensus       226 adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~  260 (263)
T COG0434         226 ADGVIVGTSLKKGGVTWNPVDLERVRRFVEAARRL  260 (263)
T ss_pred             cCceEEEEEEccCCEecCccCHHHHHHHHHHHHHh
Confidence            9999999 588888    89999999999999753

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.51  E-value=0.34  Score=38.39  Aligned_cols=68  Identities=12%  Similarity=0.192  Sum_probs=52.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++..|.+.|||-|=+-   . ...-.....++.+++.+ ++|+..     -||          +-.+++..+.+.
T Consensus       112 ~~t~~e~~~A~~~Gadyv~~F---p-t~~~~G~~~l~~~~~~~~~ipvva-----iGG----------I~~~n~~~~l~a  172 (187)
T PRK07455        112 ALTPTEIVTAWQAGASCVKVF---P-VQAVGGADYIKSLQGPLGHIPLIP-----TGG----------VTLENAQAFIQA  172 (187)
T ss_pred             cCCHHHHHHHHHCCCCEEEEC---c-CCcccCHHHHHHHHhhCCCCcEEE-----eCC----------CCHHHHHHHHHC
Confidence            689999999999999999982   2 12222578899999887 588654     466          112788999999


Q ss_pred             CCCEEEEe
Q psy7930          95 GADGFVIG  102 (146)
Q Consensus        95 GadG~VfG  102 (146)
                      |++|+.+|
T Consensus       173 Ga~~vav~  180 (187)
T PRK07455        173 GAIAVGLS  180 (187)
T ss_pred             CCeEEEEe
Confidence            99999876

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=94.47  E-value=2.1  Score=34.48  Aligned_cols=111  Identities=13%  Similarity=-0.057  Sum_probs=64.2

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----CCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcc---cCH----HHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAAL-----SEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFV---FSQ----AEKEIMAL   86 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~---Ys~----~E~~~M~~   86 (146)
                      +.+..|.+.|.+-|||+-.-     ...+.++. ...+++..+..++.|..+-=+ -...|.   .+.    ..++.+++
T Consensus        20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~-~~~~~~~~~~d~~~r~~~~~~~~~   98 (284)
T PRK13210         20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLS-GHRRFPFGSRDPATRERALEIMKK   98 (284)
T ss_pred             HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecc-cccCcCCCCCCHHHHHHHHHHHHH
Confidence            45667789999999997421     11122221 334444555668888765312 111121   122    24677889


Q ss_pred             HHHHHHHcCCCEEEEeeecC----CCCcC----HHHHHHHHHHhC--CCCeEEee
Q psy7930          87 DCHQFVESGADGFVIGALTG----EQEID----IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~----dg~iD----~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      -|+.++.+|++-++++.-+.    +..-.    .+.++++.+.|.  |+.+.+|-
T Consensus        99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~  153 (284)
T PRK13210         99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI  153 (284)
T ss_pred             HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            99999999999999863221    11111    235677777775  66666654

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=94.45  E-value=0.48  Score=37.10  Aligned_cols=47  Identities=21%  Similarity=0.398  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC----CHHHHHHHHhhCCCc--EEEEEcc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP----TLGLYRVIKRLVLVP--VFVMIRV   68 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP----S~g~i~~~~~~~~ip--v~vMIRP   68 (146)
                      +.+..+.++|++.|+|-  ..-|-..|    +...++++++.++.|  +++|+..
T Consensus        20 ~~~~~~~~~G~~~i~l~--~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d   72 (220)
T PRK05581         20 EEVKAVEAAGADWIHVD--VMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN   72 (220)
T ss_pred             HHHHHHHHcCCCEEEEe--CccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC
Confidence            66788999999999995  22333344    467777777765544  5677753

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=94.44  E-value=0.34  Score=40.90  Aligned_cols=78  Identities=23%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .+=+|.+|+..++..++.|++-|==-.++--.|.-+ ...+++.+++..++||.+  -   +| . -++       +|..
T Consensus       126 vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~--e---gG-I-~tp-------eda~  191 (248)
T cd04728         126 VLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIV--D---AG-I-GTP-------SDAA  191 (248)
T ss_pred             EEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE--e---CC-C-CCH-------HHHH
Confidence            455899999999999999999882111221122222 378889888887788643  1   22 2 233       4666


Q ss_pred             HHHHcCCCEEEEe
Q psy7930          90 QFVESGADGFVIG  102 (146)
Q Consensus        90 ~~~~~GadG~VfG  102 (146)
                      .+.++|+||+++|
T Consensus       192 ~AmelGAdgVlV~  204 (248)
T cd04728         192 QAMELGADAVLLN  204 (248)
T ss_pred             HHHHcCCCEEEEC
Confidence            6778999999997

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=94.40  E-value=1.1  Score=39.24  Aligned_cols=107  Identities=21%  Similarity=0.199  Sum_probs=76.4

Q ss_pred             cccceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC----CCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHH
Q psy7930           7 WNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGL----TPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus         7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl----TPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      +.++.+-..+.|+++...|.+.|||.|=+=-. ..|+-    .=|..-++++.+.+   +..++|.+..     |.. ++
T Consensus         4 ~~~~ell~pag~l~~l~~ai~~GADaVY~G~~-~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~-----~~~-~~   76 (347)
T COG0826           4 MGKPELLAPAGNLEDLKAAIAAGADAVYIGEK-EFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNT-----LLH-ND   76 (347)
T ss_pred             CCcceeecCCCCHHHHHHHHHcCCCEEEeCCc-ccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc-----ccc-cc
Confidence            56677888999999999999999999965432 22222    23455566666644   7889999987     444 34


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      +++...+.++.+.++|+|+|+++        |.-.+.-+.+...++++.
T Consensus        77 ~~~~~~~~l~~l~e~GvDaviv~--------Dpg~i~l~~e~~p~l~ih  117 (347)
T COG0826          77 ELETLERYLDRLVELGVDAVIVA--------DPGLIMLARERGPDLPIH  117 (347)
T ss_pred             hhhHHHHHHHHHHHcCCCEEEEc--------CHHHHHHHHHhCCCCcEE
Confidence            56668899999999999999998        444555555555455543

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=94.39  E-value=0.64  Score=37.06  Aligned_cols=86  Identities=22%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCC-C----CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEG-G----LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~G-G----lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      ||.-.+..|.+.|-+-+-|....... +    -++....++...+..+||+.++--|  +    -++++.+.|.+-++.+
T Consensus        11 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~--~----~~e~~~~~l~~~l~~~   84 (194)
T cd01994          11 DSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEIS--G----EEEDEVEDLKELLRKL   84 (194)
T ss_pred             HHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCC--C----CchHHHHHHHHHHHHH
Confidence            56667777888884444444322221 1    1346778888778899998755434  1    1356668888888888


Q ss_pred             HHcCCCEEEEeeecCCC
Q psy7930          92 VESGADGFVIGALTGEQ  108 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg  108 (146)
                      ++.|++++|+|.+..|-
T Consensus        85 ~~~g~~~vv~G~i~sd~  101 (194)
T cd01994          85 KEEGVDAVVFGAILSEY  101 (194)
T ss_pred             HHcCCCEEEECccccHH
Confidence            87799999999988763

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=94.37  E-value=0.28  Score=42.97  Aligned_cols=74  Identities=18%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             HHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEE--EccCCC----CCccc---CHHHHHHHHHHHHHHHHcCC
Q psy7930          26 VRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVM--IRVRAG----FDFVF---SQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        26 ~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vM--IRP~R~----gdF~Y---s~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .++||+=|-|     +||..--...++.+. ..+|||+--  +.| +.    |+|--   +.++.+.+.+|.+.+.++||
T Consensus       124 ~eaGa~aVKl-----EGg~~~~~~~I~~l~-~~GIPV~gHiGLtP-Qs~~~lGGykvqGr~~~~a~~li~dA~ale~AGA  196 (332)
T PLN02424        124 KEGGMDAVKL-----EGGSPSRVTAAKAIV-EAGIAVMGHVGLTP-QAISVLGGFRPQGRTAESAVKVVETALALQEAGC  196 (332)
T ss_pred             HHhCCcEEEE-----CCCcHHHHHHHHHHH-HcCCCEEEeecccc-eeehhhcCccccCCCHHHHHHHHHHHHHHHHcCC
Confidence            4689998887     466433345566555 468887433  678 53    23322   57889999999999999999


Q ss_pred             CEEEEeeecC
Q psy7930          97 DGFVIGALTG  106 (146)
Q Consensus        97 dG~VfG~L~~  106 (146)
                      +++|+=++.+
T Consensus       197 f~ivLE~Vp~  206 (332)
T PLN02424        197 FAVVLECVPA  206 (332)
T ss_pred             cEEEEcCCcH
Confidence            9999977654

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.35  E-value=0.79  Score=36.45  Aligned_cols=64  Identities=25%  Similarity=0.333  Sum_probs=46.4

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC---CcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF---DFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g---dF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +.++.++||.=++..          +...++.+++..++|+..|.|= ...   =|.|..      .++++.++++|||-
T Consensus        29 a~a~~~~G~~~~~~~----------~~~~i~~i~~~~~~Pil~~~~~-d~~~~~~~~~~~------~~~v~~a~~aGad~   91 (221)
T PRK01130         29 ALAAVQGGAVGIRAN----------GVEDIKAIRAVVDVPIIGIIKR-DYPDSEVYITPT------LKEVDALAAAGADI   91 (221)
T ss_pred             HHHHHHCCCeEEEcC----------CHHHHHHHHHhCCCCEEEEEec-CCCCCCceECCC------HHHHHHHHHcCCCE
Confidence            455688899888863          3789999999899999999883 311   144431      14578999999996


Q ss_pred             EEEe
Q psy7930          99 FVIG  102 (146)
Q Consensus        99 ~VfG  102 (146)
                      +++.
T Consensus        92 I~~d   95 (221)
T PRK01130         92 IALD   95 (221)
T ss_pred             EEEe
Confidence            6654

>PRK00208 thiG thiazole synthase; Reviewed

Probab=94.34  E-value=0.37  Score=40.77  Aligned_cols=75  Identities=25%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEE----EecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRL----ELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRI----ELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      .+=+|.+|+..+.+.++.|++-|    |+... ..|-.+  ...++.+++..++||.+     -+| . .++       +
T Consensus       126 vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGs-g~gi~~--~~~i~~i~e~~~vpVIv-----eaG-I-~tp-------e  188 (250)
T PRK00208        126 VLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGS-GLGLLN--PYNLRIIIEQADVPVIV-----DAG-I-GTP-------S  188 (250)
T ss_pred             EEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCC-CCCCCC--HHHHHHHHHhcCCeEEE-----eCC-C-CCH-------H
Confidence            45589999999999999999988    22321 122224  56699998887788643     123 2 233       4


Q ss_pred             HHHHHHHcCCCEEEEe
Q psy7930          87 DCHQFVESGADGFVIG  102 (146)
Q Consensus        87 dI~~~~~~GadG~VfG  102 (146)
                      |...+.++|+||+++|
T Consensus       189 da~~AmelGAdgVlV~  204 (250)
T PRK00208        189 DAAQAMELGADAVLLN  204 (250)
T ss_pred             HHHHHHHcCCCEEEEC
Confidence            6667778999999997

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=94.32  E-value=0.21  Score=41.24  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHcCCCEEEecCCC-CCC-----CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAAL-SEG-----GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l-~~G-----GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      |.-.+..|.+.  ..+...-++ ..+     -=||...+++...+..++|++.+  | ..+.   .++|.+.+++-+   
T Consensus        13 S~~al~~a~~~--~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~--~-~~~~---~e~~~e~l~~~l---   81 (223)
T TIGR00290        13 SCLALYHALKE--HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKL--Y-TEGT---EEDEVEELKGIL---   81 (223)
T ss_pred             HHHHHHHHHHh--CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEe--e-cCCC---ccHHHHHHHHHH---
Confidence            34455556665  444433222 222     23677889988888999998542  2 2332   356666665544   


Q ss_pred             HHcCCCEEEEeeecCCC
Q psy7930          92 VESGADGFVIGALTGEQ  108 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg  108 (146)
                      +++|++++|||.+..+.
T Consensus        82 ~~~gv~~vv~GdI~s~~   98 (223)
T TIGR00290        82 HTLDVEAVVFGAIYSEY   98 (223)
T ss_pred             HHcCCCEEEECCcccHH
Confidence            45599999999997653

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=94.32  E-value=0.41  Score=38.28  Aligned_cols=70  Identities=26%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH-HHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ-FVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~-~~~~Ga   96 (146)
                      .+-+..+.+.|++.|.+-+--..| +--|...+++++++.+++||.+     -||-.  |.       +|+.. +++.|+
T Consensus       156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia-----~GGi~--s~-------~di~~~l~~~ga  221 (232)
T TIGR03572       156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA-----LGGAG--SL-------DDLVEVALEAGA  221 (232)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE-----ECCCC--CH-------HHHHHHHHHcCC
Confidence            566788889999999977622222 2346799999999999999765     24432  44       44455 667899


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |||++|
T Consensus       222 dgV~vg  227 (232)
T TIGR03572       222 SAVAAA  227 (232)
T ss_pred             CEEEEe
Confidence            999998

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=94.29  E-value=0.32  Score=42.28  Aligned_cols=75  Identities=19%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEec--------CCCCCCCCCCCHH--HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELC--------AALSEGGLTPTLG--LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc--------~~l~~GGlTPS~g--~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      |.|.+++..+.+.|||-|=..        .+...|+-.|.++  .+..+++..++||..      .|+..+.        
T Consensus       148 V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIA------dGGI~~~--------  213 (326)
T PRK05458        148 VGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA------DGGIRTH--------  213 (326)
T ss_pred             cCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEE------eCCCCCH--------
Confidence            459999999999999997544        2233455568555  488888888888643      3446655        


Q ss_pred             HHHHHHHHcCCCEEEEeee
Q psy7930          86 LDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L  104 (146)
                      .||..+..+||+++.+|-+
T Consensus       214 ~Di~KaLa~GA~aV~vG~~  232 (326)
T PRK05458        214 GDIAKSIRFGATMVMIGSL  232 (326)
T ss_pred             HHHHHHHHhCCCEEEechh
Confidence            6888999999999999954

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=94.27  E-value=0.59  Score=40.91  Aligned_cols=97  Identities=14%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      +.++=+-+.|++++..|.+.|||-|=+---.    ..|...+....++.+++..++||+.+     || -  +.      
T Consensus       240 ~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~Ai-----GG-I--~~------  305 (347)
T PRK02615        240 EKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAI-----GG-I--DK------  305 (347)
T ss_pred             CCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CC-C--CH------
Confidence            3567888999999999999999998764322    12333456788999988889998765     55 1  11      


Q ss_pred             HHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          85 ALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                       .++..++++|++||+++ ++..... -..+++++.+.
T Consensus       306 -~ni~~l~~~Ga~gVAvisaI~~a~d-p~~~~~~l~~~  341 (347)
T PRK02615        306 -SNIPEVLQAGAKRVAVVRAIMGAED-PKQATQELLKQ  341 (347)
T ss_pred             -HHHHHHHHcCCcEEEEeHHHhCCCC-HHHHHHHHHHH
Confidence             46788889999999664 4554322 22344444443

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=94.26  E-value=0.26  Score=37.03  Aligned_cols=110  Identities=17%  Similarity=0.024  Sum_probs=68.9

Q ss_pred             HHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccC---------HHHHHHHHHHHHHH
Q psy7930          23 LAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS---------QAEKEIMALDCHQF   91 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys---------~~E~~~M~~dI~~~   91 (146)
                      ..|.+.|.+.|||+-.-...-..  .+..-++...+..++.|..+--+ ........         ..-++.|++-++.+
T Consensus         2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a   80 (213)
T PF01261_consen    2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPP-TNFWSPDEENGSANDEREEALEYLKKAIDLA   80 (213)
T ss_dssp             HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEE-ESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecc-cccccccccccCcchhhHHHHHHHHHHHHHH
Confidence            46889999999999632111110  12445555556678887766655 22222111         22288999999999


Q ss_pred             HHcCCCEEEEeee--cCCCCcCHH--------HHHHHHHHhC--CCCeEEeecc
Q psy7930          92 VESGADGFVIGAL--TGEQEIDIE--------FIRQLKTIIG--DRPITFHRAF  133 (146)
Q Consensus        92 ~~~GadG~VfG~L--~~dg~iD~~--------~~~~Li~~a~--~~~vtFHRAF  133 (146)
                      +.+|++-+++..=  ......+.+        .+++|.+.|.  ++.+.++=--
T Consensus        81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~  134 (213)
T PF01261_consen   81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP  134 (213)
T ss_dssp             HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred             HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence            9999999999954  233334433        6677777775  6767766433

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=94.20  E-value=0.5  Score=39.13  Aligned_cols=92  Identities=20%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhh---CCCcEEEEEccCCCCCc--ccCHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRL---VLVPVFVMIRVRAGFDF--VFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF--~Ys~~E~~~M~~dI~~~~   92 (146)
                      .++..|.+.|||-+-+--+.  |.+.  .-...++++++.   .++|+.|+..| +|.++  +|+++++   ..-.+.+.
T Consensus        97 ~~ve~A~~~Gad~v~~~~~~--g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~-~g~~~e~~~~~~~i---~~a~~~a~  170 (267)
T PRK07226         97 GTVEEAIKLGADAVSVHVNV--GSETEAEMLEDLGEVAEECEEWGMPLLAMMYP-RGPGIKNEYDPEVV---AHAARVAA  170 (267)
T ss_pred             ecHHHHHHcCCCEEEEEEec--CChhHHHHHHHHHHHHHHHHHcCCcEEEEEec-CCCccCCCccHHHH---HHHHHHHH
Confidence            45778999999988777553  2222  233444444443   48999999889 77543  3555443   34457778


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ++|||-+=.+.     .-|.+.++++++.+
T Consensus       171 e~GAD~vKt~~-----~~~~~~l~~~~~~~  195 (267)
T PRK07226        171 ELGADIVKTNY-----TGDPESFREVVEGC  195 (267)
T ss_pred             HHCCCEEeeCC-----CCCHHHHHHHHHhC
Confidence            89999886652     23677888887654

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=94.20  E-value=1.6  Score=36.13  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=74.6

Q ss_pred             eeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHhhC-CCcEEEEEccC-CCCCcccCHHHH
Q psy7930          11 TLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKRLV-LVPVFVMIRVR-AGFDFVFSQAEK   81 (146)
Q Consensus        11 ~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~~~-~ipv~vMIRP~-R~gdF~Ys~~E~   81 (146)
                      .+-+.-.+.++    +.++.+.|||=|||.-.+-. .+.+...   .+.++++.. ++|+.+-+|++ -||.|.+++++.
T Consensus        19 ~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~   97 (253)
T PRK02412         19 IVPIMGKTLEEVLAEALAISKYDADIIEWRADFLE-KISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEY   97 (253)
T ss_pred             EEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhh-ccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHH
Confidence            44444566666    55566789999999977543 2322222   333344443 68999999972 368888887766


Q ss_pred             HHHHHHHHHHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCe--EEeecccCCCC
Q psy7930          82 EIMALDCHQFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPI--TFHRAFDVVRE  138 (146)
Q Consensus        82 ~~M~~dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~v--tFHRAFD~~~d  138 (146)
                      ..+   ++.+.++| +|-+-+=.     ..+.+.+++++..++  +.++  .+| -|+.+++
T Consensus        98 ~~l---l~~~~~~~~~d~vDiEl-----~~~~~~~~~l~~~~~~~~~kvI~S~H-~f~~tP~  150 (253)
T PRK02412         98 LAL---IKAVIKSGLPDYIDVEL-----FSGKDVVKEMVAFAHEHGVKVVLSYH-DFEKTPP  150 (253)
T ss_pred             HHH---HHHHHhcCCCCEEEEec-----cCChHHHHHHHHHHHHcCCEEEEeeC-CCCCCcC
Confidence            554   35556777 77766532     335577888988865  4554  455 5777664

>PRK08227 autoinducer 2 aldolase; Validated

Probab=94.14  E-value=0.34  Score=41.01  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      .++.|.+.|||-|-..=         +-..++++.+...+||.+     .||.=. ++.|+-.|.+|   +.+.||.|++
T Consensus       163 aaRiaaELGADiVK~~y---------~~~~f~~vv~a~~vPVvi-----aGG~k~-~~~~~L~~v~~---ai~aGa~Gv~  224 (264)
T PRK08227        163 ATRIAAEMGAQIIKTYY---------VEEGFERITAGCPVPIVI-----AGGKKL-PERDALEMCYQ---AIDEGASGVD  224 (264)
T ss_pred             HHHHHHHHcCCEEecCC---------CHHHHHHHHHcCCCcEEE-----eCCCCC-CHHHHHHHHHH---HHHcCCceee
Confidence            47889999999998542         115788888877777754     466666 77777655554   5569999999


Q ss_pred             Eee
Q psy7930         101 IGA  103 (146)
Q Consensus       101 fG~  103 (146)
                      +|=
T Consensus       225 ~GR  227 (264)
T PRK08227        225 MGR  227 (264)
T ss_pred             ech
Confidence            993

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=94.11  E-value=2  Score=34.32  Aligned_cols=106  Identities=12%  Similarity=-0.002  Sum_probs=66.0

Q ss_pred             CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCc--------ccCH--HH-HHHHH
Q psy7930          18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDF--------VFSQ--AE-KEIMA   85 (146)
Q Consensus        18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF--------~Ys~--~E-~~~M~   85 (146)
                      +++ .+..+.+.|-+-|||-...     ......+++..+..++.|..+--|  .+++        +.++  .+ .+.++
T Consensus        15 ~l~e~~~~~~e~G~~~vEl~~~~-----~~~~~~l~~~l~~~gl~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T TIGR03234        15 PFLERFAAAAQAGFTGVEYLFPY-----DWDAEALKARLAAAGLEQVLFNLP--AGDWAAGERGIACLPGREEEFREGVA   87 (254)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCc-----cCCHHHHHHHHHHcCCeEEEEeCC--CCccccCCCccccCCccHHHHHHHHH
Confidence            444 4455688999999996421     345677777777788887665433  2221        2221  22 46777


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCCcCH--------HHHHHHHHHhC--CCCeEEe
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQEIDI--------EFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~iD~--------~~~~~Li~~a~--~~~vtFH  130 (146)
                      +-|+.++++|+..+++..-..-+..+.        +.++++.+.|.  |+.+.++
T Consensus        88 ~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE  142 (254)
T TIGR03234        88 LAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIE  142 (254)
T ss_pred             HHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            889999999999877643222122221        34777777775  6666665

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein

Probab=94.10  E-value=0.76  Score=37.17  Aligned_cols=85  Identities=22%  Similarity=0.294  Sum_probs=57.5

Q ss_pred             cCHHHHHHHHHcCCCEEE-ecCCCCC-----CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLE-LCAALSE-----GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIE-Lc~~l~~-----GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      ||.-.+..|.+.|- .+. |..-...     .--++....++...+..++|+.++--+  +    -++.+.+.|..-+..
T Consensus         9 DS~~al~~a~~~G~-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~--~----~~~~~~~~l~~~l~~   81 (218)
T TIGR03679         9 DSNYALYKALEEGH-EVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETS--G----EKEKEVEDLKGALKE   81 (218)
T ss_pred             HHHHHHHHHHHcCC-EEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECC--C----CChHHHHHHHHHHHH
Confidence            55666777778784 443 3221111     113456777877778889997654433  1    246777788888888


Q ss_pred             HHHcCCCEEEEeeecCCC
Q psy7930          91 FVESGADGFVIGALTGEQ  108 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg  108 (146)
                      +++.|++++|+|.+..+.
T Consensus        82 ~~~~g~~~vv~G~i~sd~   99 (218)
T TIGR03679        82 LKREGVEGIVTGAIASRY   99 (218)
T ss_pred             HHHcCCCEEEECCcccHh
Confidence            888899999999988753

This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=94.09  E-value=1.3  Score=36.64  Aligned_cols=109  Identities=21%  Similarity=0.294  Sum_probs=72.5

Q ss_pred             cceeEEEecCHHHHHHHHH---cCCCEEEecCCCCC-------CCC----CCC--HHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930           9 KTTLEVCVDSVASALAAVR---GGADRLELCAALSE-------GGL----TPT--LGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~---~GAdRIELc~~l~~-------GGl----TPS--~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      .+++-|+-.|+++...+.+   .+++-|||+.+-..       +|.    .|.  ..+++.++ ..++||.|=|||  +.
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~-~~~~PVsvKiR~--~~  145 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK-ELNKPIFVKIRG--NC  145 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH-cCCCcEEEEeCC--CC
Confidence            3577888888888777644   49999999865422       121    332  33455555 348999999999  32


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCC--cCHHHHHHHHHHhCCCCeE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQE--IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~--iD~~~~~~Li~~a~~~~vt  128 (146)
                          ++.+   ...-.+.+.+.|+|++.+=...+ |.  .|.+.++++.+..++.|+.
T Consensus       146 ----~~~~---~~~~a~~l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~~ipII  195 (231)
T TIGR00736       146 ----IPLD---ELIDALNLVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFNDKIII  195 (231)
T ss_pred             ----Ccch---HHHHHHHHHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcCCCcEE
Confidence                2211   22345567899999998854443 33  7999999998876556543

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PLN02535 glycolate oxidase

Probab=94.09  E-value=0.27  Score=43.29  Aligned_cols=77  Identities=18%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ++||  -+.+++..|.+.|+|-|-+...  -..++..|+...+.++++.+  ++||.+      .|++...        .
T Consensus       228 vKgV--~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~------dGGIr~g--------~  291 (364)
T PLN02535        228 IKGV--LTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL------DGGVRRG--------T  291 (364)
T ss_pred             EecC--CCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe------eCCCCCH--------H
Confidence            4555  7899999999999999988753  12333445677888887765  578653      3335544        6


Q ss_pred             HHHHHHHcCCCEEEEee
Q psy7930          87 DCHQFVESGADGFVIGA  103 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~  103 (146)
                      ||..+..+||++|.+|-
T Consensus       292 Dv~KALalGA~aV~vGr  308 (364)
T PLN02535        292 DVFKALALGAQAVLVGR  308 (364)
T ss_pred             HHHHHHHcCCCEEEECH
Confidence            88899999999999983

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=94.03  E-value=0.3  Score=43.18  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=56.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      +++||  -+.+++..|.+.|+|-|-+-.+   ||-.     |+...+.++++.++  +||.+      .|++.+.     
T Consensus       228 ivKgV--~~~~dA~~a~~~Gvd~I~Vsnh---GGrqld~~~~t~~~L~ei~~av~~~~~vi~------dGGIr~G-----  291 (367)
T PLN02493        228 LVKGV--LTGEDARIAIQAGAAGIIVSNH---GARQLDYVPATISALEEVVKATQGRIPVFL------DGGVRRG-----  291 (367)
T ss_pred             EeecC--CCHHHHHHHHHcCCCEEEECCC---CCCCCCCchhHHHHHHHHHHHhCCCCeEEE------eCCcCcH-----
Confidence            36787  4899999999999999987654   4444     67888888877653  66543      3446665     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         .||..+..+||+++-+|
T Consensus       292 ---~Dv~KALALGA~aV~iG  308 (367)
T PLN02493        292 ---TDVFKALALGASGIFIG  308 (367)
T ss_pred             ---HHHHHHHHcCCCEEEEc
Confidence               68888999999999998

>PLN02591 tryptophan synthase

Probab=93.92  E-value=0.49  Score=39.57  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930          20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +-+..-.++|||-|||-=   +.              -..|+|.  .+.+++++++..++|+.+|--=  .-=|.|.-+.
T Consensus        20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~--N~i~~~G~~~   97 (250)
T PLN02591         20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYY--NPILKRGIDK   97 (250)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecc--cHHHHhHHHH
Confidence            345567889999999962   22              1234554  4677888887788998888642  1125555444


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          81 KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |      ++.++++|+||+++=    |  +-.+...++.+.|+
T Consensus        98 F------~~~~~~aGv~Gviip----D--LP~ee~~~~~~~~~  128 (250)
T PLN02591         98 F------MATIKEAGVHGLVVP----D--LPLEETEALRAEAA  128 (250)
T ss_pred             H------HHHHHHcCCCEEEeC----C--CCHHHHHHHHHHHH
Confidence            4      678899999998764    3  34466677777765

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.88  E-value=0.75  Score=41.84  Aligned_cols=97  Identities=16%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             cceeEEEec----CHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH
Q psy7930           9 KTTLEVCVD----SVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         9 ~~~lEvcv~----s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      +.++-+++.    ..+-+.+..++|+|-|++-.+   .|.|+ ....++++++.. ++||.+       | -+.|.    
T Consensus       229 rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a---~G~s~~~~~~i~~ik~~~~~~~v~a-------G-~V~t~----  293 (495)
T PTZ00314        229 QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS---QGNSIYQIDMIKKLKSNYPHVDIIA-------G-NVVTA----  293 (495)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC---CCCchHHHHHHHHHHhhCCCceEEE-------C-CcCCH----
Confidence            445555553    357788889999999999864   57666 467899988875 455543       2 34443    


Q ss_pred             HHHHHHHHHHHcCCCEEEEee------ecC----CCCcCHHHHHHHHHHhC
Q psy7930          83 IMALDCHQFVESGADGFVIGA------LTG----EQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~  123 (146)
                         ++.+.+.++|||+|.+|.      .|.    -|--...++.++.+.++
T Consensus       294 ---~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~  341 (495)
T PTZ00314        294 ---DQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYAR  341 (495)
T ss_pred             ---HHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHh
Confidence               456677889999999873      232    23334556666666665

>PLN02979 glycolate oxidase

Probab=93.88  E-value=0.33  Score=42.96  Aligned_cols=74  Identities=22%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      +++||  .+.++|..|.+.|+|-|-+-.+   ||-.     |+...+.++++.++  +||.+      .|++.+.     
T Consensus       227 ivKgV--~~~~dA~~a~~~Gvd~I~Vsnh---GGrqld~~p~t~~~L~ei~~~~~~~~~Vi~------dGGIr~G-----  290 (366)
T PLN02979        227 LVKGV--LTGEDARIAIQAGAAGIIVSNH---GARQLDYVPATISALEEVVKATQGRIPVFL------DGGVRRG-----  290 (366)
T ss_pred             EeecC--CCHHHHHHHHhcCCCEEEECCC---CcCCCCCchhHHHHHHHHHHHhCCCCeEEE------eCCcCcH-----
Confidence            46777  4899999999999999977654   4444     56777777776654  56542      3446666     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         .||..+..+|||++-+|
T Consensus       291 ---~Di~KALALGAdaV~iG  307 (366)
T PLN02979        291 ---TDVFKALALGASGIFIG  307 (366)
T ss_pred             ---HHHHHHHHcCCCEEEEc
Confidence               68889999999999998

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=93.83  E-value=1.2  Score=37.62  Aligned_cols=91  Identities=10%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      .+-|..=++.||++|.|.+=    |-. ...+++++.+.+++||.+      ||+-.       .  ++++.+.++||+.
T Consensus        41 ~~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~~~~~~v~v------GGGIr-------~--e~v~~~l~aGa~r  100 (253)
T TIGR02129        41 SYYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALHAYPGGLQV------GGGIN-------D--TNAQEWLDEGASH  100 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHHhCCCCEEE------eCCcC-------H--HHHHHHHHcCCCE
Confidence            57888888999999999974    655 999999999998888753      44332       1  6788999999999


Q ss_pred             EEEeeec-CCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          99 FVIGALT-GEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        99 ~VfG~L~-~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      +++|-.- .+..++.+.++++.+.-++=.++.
T Consensus       101 VvIGS~av~~~~i~~~~~~~i~~~fG~~~Ivv  132 (253)
T TIGR02129       101 VIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIV  132 (253)
T ss_pred             EEECcHHHhCCCCCHHHHHHHHHHhCCCCEEE
Confidence            9999532 466789999999999886545544

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=93.77  E-value=0.34  Score=42.99  Aligned_cols=70  Identities=17%  Similarity=0.122  Sum_probs=46.4

Q ss_pred             HHHHHHcCCCEEEecCCCCC------C----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALSE------G----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~------G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +...++.|||-|||+=+-..      +    |-+|.  ..+++.+++..++||.|=|-| .-.          .+..=++
T Consensus       133 a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP-n~t----------~i~~ia~  201 (385)
T PLN02495        133 IERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP-NIT----------DITQPAR  201 (385)
T ss_pred             HHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC-Chh----------hHHHHHH
Confidence            44667889999999753211      1    23431  234466677778999999999 221          1444556


Q ss_pred             HHHHcCCCEEEEe
Q psy7930          90 QFVESGADGFVIG  102 (146)
Q Consensus        90 ~~~~~GadG~VfG  102 (146)
                      .+.+.|||||+.-
T Consensus       202 aa~~~Gadgi~li  214 (385)
T PLN02495        202 VALKSGCEGVAAI  214 (385)
T ss_pred             HHHHhCCCEEEEe
Confidence            6889999999974

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.75  E-value=1.1  Score=36.60  Aligned_cols=89  Identities=22%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             CH-HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SV-ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~-~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++ +=+....+.||++|-+.+--.. .+-.+...+++++++.+++||.+      +|+.. |.       +|++.+.+.|
T Consensus        31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~------~GGi~-s~-------~~~~~~l~~G   96 (253)
T PRK02083         31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTV------GGGIR-SV-------EDARRLLRAG   96 (253)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEe------eCCCC-CH-------HHHHHHHHcC
Confidence            45 4556667889999999975433 35578899999999999999865      33333 22       5666677789


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ++++++|--.-   -|.+.++++.+..+
T Consensus        97 a~~Viigt~~l---~~p~~~~ei~~~~g  121 (253)
T PRK02083         97 ADKVSINSAAV---ANPELISEAADRFG  121 (253)
T ss_pred             CCEEEEChhHh---hCcHHHHHHHHHcC
Confidence            99999995432   25567777777653

>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=93.74  E-value=1.9  Score=32.91  Aligned_cols=110  Identities=14%  Similarity=0.095  Sum_probs=63.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhC-CCcEEE--EEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLV-LVPVFV--MIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~-~ipv~v--MIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +.+..+.++|..-+.-......++.. .+...+.++.+.. ++-+..  .+.+ +....  .+...+...+.+....+.|
T Consensus        39 ~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~  115 (275)
T cd01292          39 RALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLGIPG-VPAAV--DEDAEALLLELLRRGLELG  115 (275)
T ss_pred             HHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEeccCCC-Ccccc--chhHHHHHHHHHHHHHhcC
Confidence            45567889998888876543322221 2333333333333 322222  1222 22211  3344556667777777678


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA  132 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA  132 (146)
                      +.|+=+.........+.+.++++++.|+  ++++++|-.
T Consensus       116 ~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~  154 (275)
T cd01292         116 AVGLKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAG  154 (275)
T ss_pred             CeeEeeCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeC
Confidence            8888555433333358889999998887  889999964

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=93.68  E-value=0.61  Score=38.06  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+=+...++.|++.+=+-+--..|..+ |...+++++++.+++||.+     .||=+  |.+++..+.    .+.+.|++
T Consensus       149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipvia-----sGGi~--s~~D~~~l~----~~~~~Gvd  217 (241)
T PRK14024        149 WEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVA-----SGGVS--SLDDLRALA----ELVPLGVE  217 (241)
T ss_pred             HHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEE-----eCCCC--CHHHHHHHh----hhccCCcc
Confidence            344677889999999888754444332 6889999999999999865     46644  443433321    11246999


Q ss_pred             EEEEeeecCCCCcCHHHHHHH
Q psy7930          98 GFVIGALTGEQEIDIEFIRQL  118 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~L  118 (146)
                      |+++|=---+|.++.+...+.
T Consensus       218 gV~igra~~~g~~~~~~~~~~  238 (241)
T PRK14024        218 GAIVGKALYAGAFTLPEALAV  238 (241)
T ss_pred             EEEEeHHHHcCCCCHHHHHHH
Confidence            999997777888988865543

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=93.68  E-value=2.4  Score=33.55  Aligned_cols=101  Identities=13%  Similarity=0.205  Sum_probs=66.1

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC-----c----ccCHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD-----F----VFSQAEKEIMAL   86 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd-----F----~Ys~~E~~~M~~   86 (146)
                      +.|.+++..+.+.||+++=|-+.+..     +...++++.+...-.+.+-|=. |.|-     +    ..+..|      
T Consensus        83 I~~~ed~~~~~~~Ga~~vilg~~~l~-----~~~~l~ei~~~~~~~i~vsid~-k~~~v~~~g~~~~~~~~~~e------  150 (233)
T PRK00748         83 IRSLETVEALLDAGVSRVIIGTAAVK-----NPELVKEACKKFPGKIVVGLDA-RDGKVATDGWLETSGVTAED------  150 (233)
T ss_pred             cCCHHHHHHHHHcCCCEEEECchHHh-----CHHHHHHHHHHhCCCceeeeec-cCCEEEEccCeecCCCCHHH------
Confidence            46789999999999999977665443     4456777766542223233333 2211     1    122223      


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      -++.+.++|++.+++=-.+.+|+   .|.+.++++.+... .|+.-
T Consensus       151 ~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~-ipvia  195 (233)
T PRK00748        151 LAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVP-IPVIA  195 (233)
T ss_pred             HHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC-CCEEE
Confidence            36677889999988777887764   89999999988753 66654

>cd00945 Aldolase_Class_I Class I aldolases

Probab=93.60  E-value=0.94  Score=34.03  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=56.8

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +..+.++|++-|+++.           ++++.+++..   ++||.+=+-. ..+.     .-.+...+.++.++++|+|+
T Consensus        19 ~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~~~v~~-~~~~-----~~~~~~~~~a~~a~~~Gad~   81 (201)
T cd00945          19 CDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVIVVVGF-PTGL-----TTTEVKVAEVEEAIDLGADE   81 (201)
T ss_pred             HHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEEEEecC-CCCC-----CcHHHHHHHHHHHHHcCCCE
Confidence            4456778999999884           7888887765   3777665544 2222     22466678889999999999


Q ss_pred             EEEeeecCCCCcC------HHHHHHHHHHh-CCCCeEE
Q psy7930          99 FVIGALTGEQEID------IEFIRQLKTII-GDRPITF  129 (146)
Q Consensus        99 ~VfG~L~~dg~iD------~~~~~~Li~~a-~~~~vtF  129 (146)
                      +.+-. ......+      .+..+++.+.+ .++|+..
T Consensus        82 i~v~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~i  118 (201)
T cd00945          82 IDVVI-NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKV  118 (201)
T ss_pred             EEEec-cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEE
Confidence            98742 1111122      34445566665 4677554

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=93.59  E-value=0.81  Score=38.15  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             HHHHHHcCCCEEEecCCCCC------CCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          22 ALAAVRGGADRLELCAALSE------GGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~------GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..-.+.|.+.||.-..-..      =+-+| ...++.+++.. +.++.++.|. .. -+.|+....+.++.||+...+.
T Consensus        27 a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~-~e~i~~~~~~~~~~~l~~~~r~-~~-~~~~~~~p~~~~~~di~~~~~~  103 (275)
T cd07937          27 AEALDEAGFFSLEVWGGATFDVCMRFLNEDP-WERLRELRKAMPNTPLQMLLRG-QN-LVGYRHYPDDVVELFVEKAAKN  103 (275)
T ss_pred             HHHHHHcCCCEEEccCCcchhhhccccCCCH-HHHHHHHHHhCCCCceehhccc-cc-ccCccCCCcHHHHHHHHHHHHc
Confidence            44556789999998741100      03333 45566666543 6789999987 43 3667777888889999999999


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      |++.|-+.+=..    |.+.+.+.++.|+  |+.+.|+
T Consensus       104 g~~~iri~~~~~----~~~~~~~~i~~ak~~G~~v~~~  137 (275)
T cd07937         104 GIDIFRIFDALN----DVRNLEVAIKAVKKAGKHVEGA  137 (275)
T ss_pred             CCCEEEEeecCC----hHHHHHHHHHHHHHCCCeEEEE
Confidence            999987764222    4778888888887  6666654

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=93.56  E-value=1.1  Score=35.77  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=70.7

Q ss_pred             eEEEe----cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHH---HHHH
Q psy7930          12 LEVCV----DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQA---EKEI   83 (146)
Q Consensus        12 lEvcv----~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~---E~~~   83 (146)
                      +-+.+    .|.+++..+.+.||+++-+-+.+     -++..+++++.+..+ -.+.+-|-. +.|.......   .-..
T Consensus        77 ~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~-----~~~~~~~~~i~~~~g~~~i~~sid~-~~~~v~~~g~~~~~~~~  150 (241)
T PRK13585         77 VPVQLGGGIRSAEDAASLLDLGVDRVILGTAA-----VENPEIVRELSEEFGSERVMVSLDA-KDGEVVIKGWTEKTGYT  150 (241)
T ss_pred             CcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH-----hhChHHHHHHHHHhCCCcEEEEEEe-eCCEEEECCCcccCCCC
Confidence            44555    78999999999999999886543     235677888877652 234444443 3322221100   0001


Q ss_pred             HHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          84 MALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ..+-++.+.+.|++.+++--.+.+|.   .|.+.++++.+.. ++|++.
T Consensus       151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~-~iPvia  198 (241)
T PRK13585        151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV-DIPVIA  198 (241)
T ss_pred             HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC-CCCEEE
Confidence            23445666789999999877777653   7888888888866 466554

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=93.54  E-value=1.2  Score=36.48  Aligned_cols=107  Identities=8%  Similarity=0.067  Sum_probs=76.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH----HHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI----MALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~----M~~dI~~~   91 (146)
                      +.|++++....+.||+|+=+.+...     -++.+++++.+..+=.|.+-|-- +.| .+++..-.+.    ..+=++.+
T Consensus        85 Irs~e~v~~~l~~Ga~kvvigt~a~-----~~~~~l~~~~~~fg~~ivvslD~-~~g-~v~~~gw~~~~~~~~~~~~~~~  157 (234)
T PRK13587         85 IRTKSQIMDYFAAGINYCIVGTKGI-----QDTDWLKEMAHTFPGRIYLSVDA-YGE-DIKVNGWEEDTELNLFSFVRQL  157 (234)
T ss_pred             cCCHHHHHHHHHCCCCEEEECchHh-----cCHHHHHHHHHHcCCCEEEEEEe-eCC-EEEecCCcccCCCCHHHHHHHH
Confidence            4689999999999999997665321     26789999988775457777776 655 2222111111    13346677


Q ss_pred             HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEEe
Q psy7930          92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtFH  130 (146)
                      .++|+.++++=-++.||+   .|.+.++++.+.. +.|+...
T Consensus       158 ~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~-~ipvi~~  198 (234)
T PRK13587        158 SDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT-TIPVIAS  198 (234)
T ss_pred             HHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC-CCCEEEe
Confidence            889999999999999985   7899999998864 5666654

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=93.54  E-value=1.2  Score=38.77  Aligned_cols=112  Identities=23%  Similarity=0.244  Sum_probs=83.5

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC----CC---HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT----PT---LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS---~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      ..++...+-|...+..+++.|+|=|= |...+.||-+    ++   ..++.++++.++ |||..     -|| ....   
T Consensus       127 g~~v~~~v~~~~~A~~~~~~G~d~vI-~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViA-----AGG-I~dg---  196 (336)
T COG2070         127 GIKVIHSVITVREALKAERAGADAVI-AQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIA-----AGG-IADG---  196 (336)
T ss_pred             CCeEEEEeCCHHHHHHHHhCCCCEEE-ecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEE-----ecC-ccCh---
Confidence            46788899999999999999999774 4445566652    23   567888888888 89854     244 5443   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe---eecCCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930          81 KEIMALDCHQFVESGADGFVIG---ALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV  136 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG---~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~  136 (146)
                           ++|..+..+||+||.+|   ..|.+.... +.-|+.+-.|..-..+.=++|+-.
T Consensus       197 -----~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~-~~~K~~l~~a~~~Dtv~~~~~~G~  249 (336)
T COG2070         197 -----RGIAAALALGADGVQMGTRFLATKEADAS-DAYKQALLQATEDDTVLTKSFTGK  249 (336)
T ss_pred             -----HHHHHHHHhccHHHHhhhhhhcccccCCC-HHHHHHHhcccccCeEEEcccCCC
Confidence                 67778888999999999   346666666 777888888887777776777654

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=93.53  E-value=1.5  Score=35.82  Aligned_cols=89  Identities=18%  Similarity=0.208  Sum_probs=64.2

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++.+.....+..++++=+.+- =...|..|...+++++.+.+++||.+      +|+.. |       .+|++.+.++|
T Consensus        30 ~dp~~~a~~~~~~~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~------gGGIr-s-------~edv~~l~~~G   95 (228)
T PRK04128         30 GDPVEIALRFSEYVDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQV------GGGLR-T-------YESIKDAYEIG   95 (228)
T ss_pred             CCHHHHHHHHHHhCCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEE------cCCCC-C-------HHHHHHHHHCC
Confidence            3666665555444999988542 13458889999999999988899876      33222 2       25777788899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ++++|+|  +.-  +|.+.++++.+..+
T Consensus        96 ~~~vivG--taa--~~~~~l~~~~~~~g  119 (228)
T PRK04128         96 VENVIIG--TKA--FDLEFLEKVTSEFE  119 (228)
T ss_pred             CCEEEEC--chh--cCHHHHHHHHHHcC
Confidence            9999999  433  38889999988774

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=93.48  E-value=0.13  Score=39.78  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +.+..+.++|++=|.|-.    .+++. ....+.+++     +..++++ ++..|.+++        +++.+.+.|+|||
T Consensus        17 ~~~~~~~~~g~~~v~lR~----~~~~~-~~~~~~~~~-----l~~~~~~-~~~~l~i~~--------~~~la~~~g~~Gv   77 (196)
T TIGR00693        17 NRVEAALKGGVTLVQLRD----KGSNT-RERLALAEK-----LQELCRR-YGVPFIVND--------RVDLALALGADGV   77 (196)
T ss_pred             HHHHHHHhcCCCEEEEec----CCCCH-HHHHHHHHH-----HHHHHHH-hCCeEEEEC--------HHHHHHHcCCCEE
Confidence            456678899999887753    34333 222222222     1224456 666677664        5678899999999


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhCCCCeEEeec
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIGDRPITFHRA  132 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRA  132 (146)
                      .+|    ++.++.+..++++.....+.+++|+.
T Consensus        78 Hl~----~~~~~~~~~r~~~~~~~~ig~s~h~~  106 (196)
T TIGR00693        78 HLG----QDDLPASEARALLGPDKIIGVSTHNL  106 (196)
T ss_pred             ecC----cccCCHHHHHHhcCCCCEEEEeCCCH
Confidence            998    33466666665553333344555544

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.47  E-value=0.66  Score=38.09  Aligned_cols=97  Identities=21%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      .++..|.+.||+-|-+-.+..  . .....   .++++++.   .++|+.+++-| +|-...+.+  .+...+..+.+.+
T Consensus        94 ~~v~~al~~Ga~~v~~~~~~g--~-~~~~~~~~~~~~i~~~~~~~g~~liv~~~~-~Gvh~~~~~--~~~~~~~~~~a~~  167 (258)
T TIGR01949        94 TTVEDAIRMGADAVSIHVNVG--S-DTEWEQIRDLGMIAEICDDWGVPLLAMMYP-RGPHIDDRD--PELVAHAARLGAE  167 (258)
T ss_pred             eeHHHHHHCCCCEEEEEEecC--C-chHHHHHHHHHHHHHHHHHcCCCEEEEEec-cCccccccc--HHHHHHHHHHHHH
Confidence            357789999999888876632  2 22223   33333333   48999998778 776555422  2344444678889


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      +|||-+-++.     ..|.+.++++++.+ ++|+.
T Consensus       168 ~GADyikt~~-----~~~~~~l~~~~~~~-~iPVv  196 (258)
T TIGR01949       168 LGADIVKTPY-----TGDIDSFRDVVKGC-PAPVV  196 (258)
T ss_pred             HCCCEEeccC-----CCCHHHHHHHHHhC-CCcEE
Confidence            9999988863     35888888888754 35553

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=93.43  E-value=1.2  Score=36.52  Aligned_cols=95  Identities=23%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             CH-HHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SV-ASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~-~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++ +-|....+.||+++-+.+--..+ +-.+...+++.+++.+++||.+     -|| . .|.       +|++.+.++|
T Consensus        31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~-----~GG-i-~s~-------~d~~~~~~~G   96 (254)
T TIGR00735        31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTV-----GGG-I-KSI-------EDVDKLLRAG   96 (254)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEE-----ECC-C-CCH-------HHHHHHHHcC
Confidence            55 55666778899999988744343 6678899999999999999866     233 2 222       5777788889


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ++++++|--.-.   |.+.++++.+..+.-.+++
T Consensus        97 a~~vivgt~~~~---~p~~~~~~~~~~~~~~iv~  127 (254)
T TIGR00735        97 ADKVSINTAAVK---NPELIYELADRFGSQCIVV  127 (254)
T ss_pred             CCEEEEChhHhh---ChHHHHHHHHHcCCCCEEE
Confidence            999999954432   5778888877764344554

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=93.38  E-value=0.93  Score=36.23  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC---CcEEEEEccCC--CC-CcccCHH----HHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRVRA--GF-DFVFSQA----EKEIMA   85 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~---ipv~vMIRP~R--~g-dF~Ys~~----E~~~M~   85 (146)
                      +.|++++..+.+.|++++=+.+.+.     .+..+++++.+..+   +++.+=+|. .  ++ ..++++.    -.....
T Consensus        83 i~~~~d~~~~~~~G~~~vilg~~~l-----~~~~~~~~~~~~~~~~~i~vsld~~~-~~~~~~~~v~~~~~~~~~~~~~~  156 (232)
T TIGR03572        83 IRSLEDAKKLLSLGADKVSINTAAL-----ENPDLIEEAARRFGSQCVVVSIDVKK-ELDGSDYKVYSDNGRRATGRDPV  156 (232)
T ss_pred             CCCHHHHHHHHHcCCCEEEEChhHh-----cCHHHHHHHHHHcCCceEEEEEEecc-CCCCCcEEEEECCCcccCCCCHH
Confidence            4688999999999999997775433     34678888887654   333333444 2  11 1222211    011123


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      +-++.+.+.|+|.+++--++.+|+   .|.+.++++.+.. ++|+.
T Consensus       157 ~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~-~ipvi  201 (232)
T TIGR03572       157 EWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV-SIPVI  201 (232)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC-CCCEE
Confidence            556788899999999988888753   7899999988865 45654

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=93.37  E-value=3.4  Score=33.07  Aligned_cols=110  Identities=21%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHc--CCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRG--GADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        18 s~~~a~~A~~~--GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.+++....+.  |||-|||.-.+-.. .+.-....++.+++..++|+.+-+|++ .||.|..++++...+.   +.+.+
T Consensus        11 ~~~e~~~~~~~~~~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll---~~~~~   87 (225)
T cd00502          11 LLEEALSLLELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELL---EEALK   87 (225)
T ss_pred             CHHHHHHHHHHhcCCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHH---HHHHH
Confidence            44444443332  89999999766332 111134567777777789999999972 3677888877665553   45556


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHh--CCCCeEEee-cccCCC
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTII--GDRPITFHR-AFDVVR  137 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a--~~~~vtFHR-AFD~~~  137 (146)
                      +|+|-+-+=.-+       +...+++..+  ++.++..+- -|+.++
T Consensus        88 ~~~d~vDiEl~~-------~~~~~~~~~~~~~~~kiI~S~H~f~~tp  127 (225)
T cd00502          88 LGPDYVDIELDS-------ALLEELINSRKKGNTKIIGSYHDFSGTP  127 (225)
T ss_pred             HCCCEEEEEecc-------hHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            677766653211       4577777775  345543333 566665

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.36  E-value=1.1  Score=37.07  Aligned_cols=106  Identities=13%  Similarity=0.188  Sum_probs=70.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCC----CcccCHH--H-HH-HHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGF----DFVFSQA--E-KE-IMAL   86 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~g----dF~Ys~~--E-~~-~M~~   86 (146)
                      +.|++++....+.|++++-+.+.+     .++..+++++.+..+ -.+.+-|-. |.|    -.+|++.  | .. ...+
T Consensus        83 i~s~~d~~~l~~~G~~~vvigs~~-----~~~~~~~~~~~~~~~~~~i~vsiD~-k~g~~~~~~v~~~gw~~~~~~~~~e  156 (258)
T PRK01033         83 IKTLEQAKKIFSLGVEKVSINTAA-----LEDPDLITEAAERFGSQSVVVSIDV-KKNLGGKFDVYTHNGTKKLKKDPLE  156 (258)
T ss_pred             CCCHHHHHHHHHCCCCEEEEChHH-----hcCHHHHHHHHHHhCCCcEEEEEEE-ecCCCCcEEEEEcCCeecCCCCHHH
Confidence            458899999999999999988643     345678888877652 124445555 433    1333210  0 01 1123


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      =++.+.++|++.+++=-.+.+|+   .|.+.++++.+.. +.|++
T Consensus       157 ~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~-~ipvI  200 (258)
T PRK01033        157 LAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNAL-KIPLI  200 (258)
T ss_pred             HHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhC-CCCEE
Confidence            35667799999999988888764   7999999988864 46654

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.35  E-value=0.5  Score=42.26  Aligned_cols=74  Identities=23%  Similarity=0.322  Sum_probs=53.0

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC---------C-CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG---------L-TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG---------l-TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      -|.|+++++.+.+.|||-|=.  .+..|+         . .|....+..+.+   ..++||..      .|++.|+    
T Consensus       201 ~V~T~e~a~~l~~aGaD~I~v--G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA------dGGI~~~----  268 (404)
T PRK06843        201 NIVTKEAALDLISVGADCLKV--GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA------DGGIRFS----  268 (404)
T ss_pred             ecCCHHHHHHHHHcCCCEEEE--CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE------eCCCCCH----
Confidence            478899999999999999874  333332         1 365665544444   45777632      4557776    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeee
Q psy7930          82 EIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                          .||..+..+||++|++|=+
T Consensus       269 ----~Di~KALalGA~aVmvGs~  287 (404)
T PRK06843        269 ----GDVVKAIAAGADSVMIGNL  287 (404)
T ss_pred             ----HHHHHHHHcCCCEEEEcce
Confidence                7899999999999999954

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=93.35  E-value=0.36  Score=42.32  Aligned_cols=79  Identities=24%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             eeEEEec-CHHH----HHHHHHcCCCEEEecCCCCC----CC------CCC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930          11 TLEVCVD-SVAS----ALAAVRGGADRLELCAALSE----GG------LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFD   73 (146)
Q Consensus        11 ~lEvcv~-s~~~----a~~A~~~GAdRIELc~~l~~----GG------lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gd   73 (146)
                      ++-|... +.++    +..+++.|||-|||+-+-..    .|      -.|  ...+++.+++.+++||.|=||| ...+
T Consensus       103 i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p-~~~~  181 (420)
T PRK08318        103 IASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP-NITD  181 (420)
T ss_pred             EEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC-Cccc
Confidence            3444444 4443    44556779999999843221    11      233  2446677777778999999999 3221


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                             +   .+=.+.+.+.|+|||+
T Consensus       182 -------~---~~~a~~~~~~Gadgi~  198 (420)
T PRK08318        182 -------I---REPARAAKRGGADAVS  198 (420)
T ss_pred             -------H---HHHHHHHHHCCCCEEE
Confidence                   2   2333567889999999

>PRK09989 hypothetical protein; Provisional

Probab=93.33  E-value=2.7  Score=33.89  Aligned_cols=103  Identities=10%  Similarity=0.064  Sum_probs=63.0

Q ss_pred             CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCC----CCc--ccC----HHHHHHHHH
Q psy7930          18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG----FDF--VFS----QAEKEIMAL   86 (146)
Q Consensus        18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~----gdF--~Ys----~~E~~~M~~   86 (146)
                      +++ .+..+.+.|-+-|||..   ..+.+  ..-+++..+..++.+..+=-| -+    +++  ..+    ..-++.+++
T Consensus        16 ~l~~~l~~~~~~Gfd~VEl~~---~~~~~--~~~~~~~l~~~Gl~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (258)
T PRK09989         16 PFIERFAAARKAGFDAVEFLF---PYDYS--TLQIQKQLEQNHLTLALFNTA-PGDINAGEWGLSALPGREHEARADIDL   89 (258)
T ss_pred             CHHHHHHHHHHcCCCEEEECC---cccCC--HHHHHHHHHHcCCcEEEeccC-CCccCCCCCcccCCCccHHHHHHHHHH
Confidence            454 55667899999999975   34555  456777777778887766433 11    111  111    122466778


Q ss_pred             HHHHHHHcCCCEEEE--eeecCCCC------cCHHHHHHHHHHhCCCC
Q psy7930          87 DCHQFVESGADGFVI--GALTGEQE------IDIEFIRQLKTIIGDRP  126 (146)
Q Consensus        87 dI~~~~~~GadG~Vf--G~L~~dg~------iD~~~~~~Li~~a~~~~  126 (146)
                      -|+.++++|++-+++  |.+.....      --.+.++++.+.|....
T Consensus        90 ~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~g  137 (258)
T PRK09989         90 ALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHG  137 (258)
T ss_pred             HHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            888899999998864  44432211      12366777777775333

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=93.32  E-value=1.6  Score=34.67  Aligned_cols=87  Identities=25%  Similarity=0.298  Sum_probs=61.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-|..-.+.||+.+-+.+-=.. .|-.+...+++.+.+.+++|+.+      +| +.-+.       +|++.+.+.||+.
T Consensus        32 ~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~------gg-GI~~~-------ed~~~~~~~Ga~~   97 (230)
T TIGR00007        32 EAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV------GG-GIRSL-------EDVEKLLDLGVDR   97 (230)
T ss_pred             HHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE------eC-CcCCH-------HHHHHHHHcCCCE
Confidence            4455556789999999763232 46567889999999988888854      33 55554       4566677799999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +|+|...-.   |.+.+.++.+..+
T Consensus        98 vvlgs~~l~---d~~~~~~~~~~~g  119 (230)
T TIGR00007        98 VIIGTAAVE---NPDLVKELLKEYG  119 (230)
T ss_pred             EEEChHHhh---CHHHHHHHHHHhC
Confidence            999965433   4567777777765

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=93.31  E-value=0.93  Score=37.69  Aligned_cols=81  Identities=23%  Similarity=0.264  Sum_probs=52.4

Q ss_pred             ceeEEEecCHHHHHHHH----Hc--CCCEEEecCC-CCC-C-C----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930          10 TTLEVCVDSVASALAAV----RG--GADRLELCAA-LSE-G-G----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDF   74 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~----~~--GAdRIELc~~-l~~-G-G----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF   74 (146)
                      +++-++..+.++...+.    +.  +||-|||+-+ ... | |    -.|  ...+++.+++.+++||.|=||| ..   
T Consensus        93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~-~~---  168 (300)
T TIGR01037        93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP-NV---  168 (300)
T ss_pred             EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC-Ch---
Confidence            46777888877754433    32  4999999742 111 1 1    233  2456777777778999877777 11   


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                             +.+.+-.+.+.++|+|++++
T Consensus       169 -------~~~~~~a~~l~~~G~d~i~v  188 (300)
T TIGR01037       169 -------TDITEIAKAAEEAGADGLTL  188 (300)
T ss_pred             -------hhHHHHHHHHHHcCCCEEEE
Confidence                   12344456788999999997

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.24  E-value=1.6  Score=35.55  Aligned_cols=92  Identities=23%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH-cC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE-SG   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~-~G   95 (146)
                      .+-+..+.+.|++.+=+- ++...|  --|.+.+++++++..++||.+     -|| .. |.+       |+..+.+ .|
T Consensus       156 ~~~~~~~~~~g~~~ii~~-~i~~~g~~~g~d~~~i~~~~~~~~ipvia-----~GG-v~-s~~-------d~~~~~~~~G  220 (253)
T PRK02083        156 VEWAKEVEELGAGEILLT-SMDRDGTKNGYDLELTRAVSDAVNVPVIA-----SGG-AG-NLE-------HFVEAFTEGG  220 (253)
T ss_pred             HHHHHHHHHcCCCEEEEc-CCcCCCCCCCcCHHHHHHHHhhCCCCEEE-----ECC-CC-CHH-------HHHHHHHhCC
Confidence            455678889999998663 333222  235788999999988899754     355 22 333       4444454 69


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRP  126 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~  126 (146)
                      ++|+++|-+--+|.++.+.+++.+.. .+.+
T Consensus       221 ~~gvivg~al~~~~~~~~~~~~~~~~-~~~~  250 (253)
T PRK02083        221 ADAALAASIFHFGEITIGELKAYLAE-QGIP  250 (253)
T ss_pred             ccEEeEhHHHHcCCCCHHHHHHHHHH-CCCc
Confidence            99999998888899999988777753 3443

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=93.15  E-value=1.6  Score=36.35  Aligned_cols=109  Identities=16%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      .+..+.+++..|.+.|++.|.++-..+.      =|.|+.  ...+..+.+.   .++.|.+-  +  ...|.++.+++.
T Consensus        69 ~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~--~--eda~r~~~~~l~  144 (262)
T cd07948          69 HIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS--S--EDSFRSDLVDLL  144 (262)
T ss_pred             EecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--E--EeeCCCCHHHHH
Confidence            4577999999999999999999864331      244442  2223222222   24444444  3  234666655544


Q ss_pred             HHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930          83 IMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                         +-++.+.++|++.|.+  -+.-|....+.+.++++..+   +.++.||-
T Consensus       145 ---~~~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~~~~~~~~~~~~~i~~H~  191 (262)
T cd07948         145 ---RVYRAVDKLGVNRVGI--ADTVGIATPRQVYELVRTLRGVVSCDIEFHG  191 (262)
T ss_pred             ---HHHHHHHHcCCCEEEE--CCcCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence               5566677889997654  36678888888888887765   47777774

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=93.12  E-value=1.1  Score=36.80  Aligned_cols=100  Identities=17%  Similarity=0.156  Sum_probs=71.6

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHH---HHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKE---IMALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~---~M~~dI~~~   91 (146)
                      +-|.+++..+.+.||+|+=+.+..     --++.+++++.+.. +-.|.+=|=. |.+.+++++.-.+   ...+=++.+
T Consensus        82 Irs~e~~~~~l~~Ga~kvvigt~a-----~~~p~~~~~~~~~~g~~~ivvslD~-~~~~~v~~~gw~~~~~~~~e~~~~l  155 (232)
T PRK13586         82 IRDIEKAKRLLSLDVNALVFSTIV-----FTNFNLFHDIVREIGSNRVLVSIDY-DNTKRVLIRGWKEKSMEVIDGIKKV  155 (232)
T ss_pred             cCCHHHHHHHHHCCCCEEEECchh-----hCCHHHHHHHHHHhCCCCEEEEEEc-CCCCEEEccCCeeCCCCHHHHHHHH
Confidence            478899999999999999776532     13668999888776 3456555655 3233565432111   233557788


Q ss_pred             HHcCCCEEEEeeecCCCC---cCHHHHHHHHHH
Q psy7930          92 VESGADGFVIGALTGEQE---IDIEFIRQLKTI  121 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~  121 (146)
                      .++|+.+|++=-++.||+   +|.+.++++.+.
T Consensus       156 ~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~  188 (232)
T PRK13586        156 NELELLGIIFTYISNEGTTKGIDYNVKDYARLI  188 (232)
T ss_pred             HhcCCCEEEEecccccccCcCcCHHHHHHHHhC
Confidence            899999999999999986   899998888664

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=93.11  E-value=0.44  Score=39.07  Aligned_cols=70  Identities=24%  Similarity=0.294  Sum_probs=46.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC-----CCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL-----SEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |.|.++|..|+++||--+=-....     ..||..  +.+.+|+++++.++|||  |-.. |=|.|+           +.
T Consensus        21 V~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPV--MAK~-RIGHfv-----------EA   86 (208)
T PF01680_consen   21 VTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPV--MAKV-RIGHFV-----------EA   86 (208)
T ss_dssp             ESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEE--EEEE-ETT-HH-----------HH
T ss_pred             ecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEece--eecc-ccceee-----------hh
Confidence            579999999999999655433322     358875  57889999999999998  6666 668886           34


Q ss_pred             HHHHHcCCCEE
Q psy7930          89 HQFVESGADGF   99 (146)
Q Consensus        89 ~~~~~~GadG~   99 (146)
                      +.+.++|+|=+
T Consensus        87 qiLealgVD~I   97 (208)
T PF01680_consen   87 QILEALGVDYI   97 (208)
T ss_dssp             HHHHHTT-SEE
T ss_pred             hhHHHhCCcee
Confidence            56778999844

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=93.08  E-value=1.1  Score=37.19  Aligned_cols=90  Identities=22%  Similarity=0.283  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC--CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHH
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP--TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP--S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      +-+.+..++|||-|||-=-.                 -..|+|.  .+.+++++++. .++|+..|.-= . -=|.|.-+
T Consensus        28 ~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~-N-pi~~~G~e  105 (256)
T TIGR00262        28 EIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYY-N-LIFRKGVE  105 (256)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEec-c-HHhhhhHH
Confidence            33566788999999997422                 1467776  46678888866 78997666532 1 12444433


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      .      =++.++++|+||+.|=-|..      +...++++.++
T Consensus       106 ~------f~~~~~~aGvdgviipDlp~------ee~~~~~~~~~  137 (256)
T TIGR00262       106 E------FYAKCKEVGVDGVLVADLPL------EESGDLVEAAK  137 (256)
T ss_pred             H------HHHHHHHcCCCEEEECCCCh------HHHHHHHHHHH
Confidence            3      36778899999988754432      34455555554

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=93.03  E-value=1.6  Score=35.84  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=67.3

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ..+.+++..|.+.|.+.|-++...+.-  -.....++.+++ .+..+.+-+--    .+.|+++++..+.   +.+.++|
T Consensus        85 ~~~~~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~-~G~~v~~~~~~----~~~~~~~~~~~~~---~~~~~~G  154 (263)
T cd07943          85 IGTVDDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARK-LGMDVVGFLMM----SHMASPEELAEQA---KLMESYG  154 (263)
T ss_pred             ccCHHHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHH-CCCeEEEEEEe----ccCCCHHHHHHHH---HHHHHcC
Confidence            457899999999999999998654321  112223333333 24444443311    2457887766554   4567889


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC---CC-CeEEe
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG---DR-PITFH  130 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~---~~-~vtFH  130 (146)
                      +|.|.+  -+.-|....+.+.+|++..+   +. ++.||
T Consensus       155 ~d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H  191 (263)
T cd07943         155 ADCVYV--TDSAGAMLPDDVRERVRALREALDPTPVGFH  191 (263)
T ss_pred             CCEEEE--cCCCCCcCHHHHHHHHHHHHHhCCCceEEEE
Confidence            997654  47778899999999988775   33 78888

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=93.03  E-value=1.1  Score=38.50  Aligned_cols=80  Identities=24%  Similarity=0.249  Sum_probs=53.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCC-----CCCC-------------------HHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930          19 VASALAAVRGGADRLELCAALSEGG-----LTPT-------------------LGLYRVIKRLVLVPVFVMIRVRAGFDF   74 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GG-----lTPS-------------------~g~i~~~~~~~~ipv~vMIRP~R~gdF   74 (146)
                      .+.|..|.++|.|-|||..+  .|-     |+|.                   ..+++.+++.++.++.|.||- ...++
T Consensus       144 ~~AA~ra~~aGfDgVeih~a--hGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl-~~~~~  220 (343)
T cd04734         144 ADAARRCQAGGLDGVELQAA--HGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRI-SGDED  220 (343)
T ss_pred             HHHHHHHHHcCCCEEEEccc--cchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEe-ehhhc
Confidence            36778899999999999973  122     1332                   257888888888888888886 44444


Q ss_pred             ccCHHHHHHHHHHHHHHHHcC-CCEEEE
Q psy7930          75 VFSQAEKEIMALDCHQFVESG-ADGFVI  101 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~G-adG~Vf  101 (146)
                      .-...+.+.+.+=++.+.+.| +|-+.+
T Consensus       221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~v  248 (343)
T cd04734         221 TEGGLSPDEALEIAARLAAEGLIDYVNV  248 (343)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence            322122333445577778888 898877

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=93.02  E-value=1.8  Score=36.07  Aligned_cols=93  Identities=15%  Similarity=0.002  Sum_probs=57.0

Q ss_pred             HHHHHHcCCCEEEecC--CCC-C-CC--CCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCA--ALS-E-GG--LTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        22 a~~A~~~GAdRIELc~--~l~-~-GG--lTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +....+.|.+.||.=-  ... . .|  ..++...++.+.+..  +.++.+|.|| +.           ....|+..+.+
T Consensus        26 a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-----------~~~~~l~~a~~   93 (266)
T cd07944          26 YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY-GN-----------DDIDLLEPASG   93 (266)
T ss_pred             HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC-CC-----------CCHHHHHHHhc
Confidence            3445678999999852  110 0 01  112367777777654  6899999999 43           23456666777


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      .|++.+-+.+-..    +.+.+.+.++.|+  |+.+.|.
T Consensus        94 ~gv~~iri~~~~~----~~~~~~~~i~~ak~~G~~v~~~  128 (266)
T cd07944          94 SVVDMIRVAFHKH----EFDEALPLIKAIKEKGYEVFFN  128 (266)
T ss_pred             CCcCEEEEecccc----cHHHHHHHHHHHHHCCCeEEEE
Confidence            7777766654221    5666666666665  5555555

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=93.01  E-value=0.72  Score=37.60  Aligned_cols=67  Identities=28%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-+.+|+..|+++|=|-..  .| +..-+..+++.+++.+++|+.+      ||+- -|.       ++++.+.+.|||+
T Consensus       138 ~~a~aa~~~G~~~i~Le~~--sGa~~~v~~e~i~~Vk~~~~~Pv~v------GGGI-rs~-------e~a~~l~~~GAD~  201 (205)
T TIGR01769       138 AYCLAAKYFGMKWVYLEAG--SGASYPVNPETISLVKKASGIPLIV------GGGI-RSP-------EIAYEIVLAGADA  201 (205)
T ss_pred             HHHHHHHHcCCCEEEEEcC--CCCCCCCCHHHHHHHHHhhCCCEEE------eCCC-CCH-------HHHHHHHHcCCCE
Confidence            3466788899999988542  11 2225799999999999999876      2222 122       4556677889999


Q ss_pred             EEEe
Q psy7930          99 FVIG  102 (146)
Q Consensus        99 ~VfG  102 (146)
                      +|+|
T Consensus       202 VVVG  205 (205)
T TIGR01769       202 IVTG  205 (205)
T ss_pred             EEeC
Confidence            9998

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=92.99  E-value=1.8  Score=36.06  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=65.4

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +.+++..|.+.|.+.|-++....      ....+..+.+.. +.-..|.+-+  .-.|.|+++++..+   ++.+.++|+
T Consensus        84 ~~~~l~~a~~~gv~~iri~~~~~------~~~~~~~~i~~ak~~G~~v~~~~--~~a~~~~~~~~~~~---~~~~~~~g~  152 (266)
T cd07944          84 DIDLLEPASGSVVDMIRVAFHKH------EFDEALPLIKAIKEKGYEVFFNL--MAISGYSDEELLEL---LELVNEIKP  152 (266)
T ss_pred             CHHHHHHHhcCCcCEEEEecccc------cHHHHHHHHHHHHHCCCeEEEEE--EeecCCCHHHHHHH---HHHHHhCCC
Confidence            46888999999999988886433      333333333322 1122344444  22355887777655   455667899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHhC---C--CCeEEe
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTIIG---D--RPITFH  130 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a~---~--~~vtFH  130 (146)
                      +.|.+  -+.-|....+.+.+++...+   +  .++-||
T Consensus       153 ~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H  189 (266)
T cd07944         153 DVFYI--VDSFGSMYPEDIKRIISLLRSNLDKDIKLGFH  189 (266)
T ss_pred             CEEEE--ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            98755  47778889899999988874   3  778888

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.98  E-value=0.19  Score=40.59  Aligned_cols=88  Identities=27%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             cceeEEEecCHHH-------------HHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930           9 KTTLEVCVDSVAS-------------ALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDF   74 (146)
Q Consensus         9 ~~~lEvcv~s~~~-------------a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF   74 (146)
                      ++++| +.-+-++             ++.|.+.|||-|=....-. .|.|+ ....++++.+...+|=.+-|-. .||- 
T Consensus       127 ~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~-sGGi-  202 (236)
T PF01791_consen  127 KVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVPGKVGVKA-SGGI-  202 (236)
T ss_dssp             EEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEEE-ESSS-
T ss_pred             EEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCCcceEEEE-eCCC-
Confidence            45778 6555544             6678899999999998755 66664 6778888888778882222223 5675 


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCC--CEEEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGA--DGFVIG  102 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~Ga--dG~VfG  102 (146)
                        +..++....++...+.++||  -|+.+|
T Consensus       203 --~~~~~~~~l~~a~~~i~aGa~~~G~~~G  230 (236)
T PF01791_consen  203 --DAEDFLRTLEDALEFIEAGADRIGTSSG  230 (236)
T ss_dssp             --SHHHHHHSHHHHHHHHHTTHSEEEEEEH
T ss_pred             --ChHHHHHHHHHHHHHHHcCChhHHHHHH
Confidence              88999999999999999999  899887

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=92.98  E-value=0.53  Score=40.47  Aligned_cols=70  Identities=21%  Similarity=0.323  Sum_probs=57.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC-----CCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL-----SEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |.|+++|..|+++||=-+=....+     ..||.  ..++..|+++++.+++||.-.+|=  +  |          ..++
T Consensus        15 v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~--~--~----------~~Ea   80 (283)
T cd04727          15 VTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRI--G--H----------FVEA   80 (283)
T ss_pred             eCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeeh--h--H----------HHHH
Confidence            578999999999999766553332     45776  578999999999999999999986  2  2          6788


Q ss_pred             HHHHHcCCCEE
Q psy7930          89 HQFVESGADGF   99 (146)
Q Consensus        89 ~~~~~~GadG~   99 (146)
                      +.+.++|+|=|
T Consensus        81 ~~L~eaGvDiI   91 (283)
T cd04727          81 QILEALGVDMI   91 (283)
T ss_pred             HHHHHcCCCEE
Confidence            99999999977

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=92.96  E-value=2.2  Score=35.21  Aligned_cols=106  Identities=13%  Similarity=-0.015  Sum_probs=72.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCC--cccC-HH-H-HHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFD--FVFS-QA-E-KEIMALDCH   89 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gd--F~Ys-~~-E-~~~M~~dI~   89 (146)
                      +-|.+++....+.||+|+=+.+...     ....+++++.+..+=.|.+-|=- + .|+  ++.. .. | -....+=++
T Consensus        83 Irs~e~~~~~l~~Ga~~vvigT~a~-----~~p~~~~~~~~~~g~~ivvslD~-k~~g~~~~v~~~Gw~~~~~~~~~~~~  156 (243)
T TIGR01919        83 RRDDSSLRAALTGGRARVNGGTAAL-----ENPWWAAAVIRYGGDIVAVGLDV-LEDGEWHTLGNRGWSDGGGDLEVLER  156 (243)
T ss_pred             CCCHHHHHHHHHcCCCEEEECchhh-----CCHHHHHHHHHHccccEEEEEEE-ecCCceEEEECCCeecCCCcHHHHHH
Confidence            5689999999999999997765322     26678888877653234555544 3 442  2211 11 1 112334577


Q ss_pred             HHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          90 QFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      .+.+.|+..|++=-++.||+   +|.+.++++.+.. +.|+.
T Consensus       157 ~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~-~~pvi  197 (243)
T TIGR01919       157 LLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART-DAIVA  197 (243)
T ss_pred             HHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC-CCCEE
Confidence            88899999999999999986   8999999998875 44543

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=92.86  E-value=1.6  Score=35.78  Aligned_cols=99  Identities=24%  Similarity=0.302  Sum_probs=68.7

Q ss_pred             ccceeEEEecCHHHHHHHHHcCCCEEEecC----CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930           8 NKTTLEVCVDSVASALAAVRGGADRLELCA----ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus         8 ~~~~lEvcv~s~~~a~~A~~~GAdRIELc~----~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .+.++=+-+.|.+++..|++.|||-|=+=.    .-..+.-......++.+++..++|++++     ||          +
T Consensus       103 ~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAI-----GG----------i  167 (211)
T COG0352         103 PGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAI-----GG----------I  167 (211)
T ss_pred             CCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEE-----cC----------C
Confidence            445788889999999999999999997754    2223443335778888888888998887     44          1


Q ss_pred             HHHHHHHHHHcCCCEEEE-eeecCCCCcCHHHHHHHHHHh
Q psy7930          84 MALDCHQFVESGADGFVI-GALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        84 M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~~~~~~Li~~a  122 (146)
                      -.+.+..+.+.|++||.+ =+++.. .=...+.++|.+..
T Consensus       168 ~~~nv~~v~~~Ga~gVAvvsai~~a-~d~~~a~~~~~~~~  206 (211)
T COG0352         168 NLENVPEVLEAGADGVAVVSAITSA-ADPAAAAKALRNAL  206 (211)
T ss_pred             CHHHHHHHHHhCCCeEEehhHhhcC-CCHHHHHHHHHHHH
Confidence            237788999999999854 334432 22344555555544

>PRK06852 aldolase; Validated

Probab=92.77  E-value=0.86  Score=39.37  Aligned_cols=73  Identities=23%  Similarity=0.123  Sum_probs=50.6

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      -++.|.+.|||-|-..=--..|+  -+...++++.+.+ .+||.+     .||.=. ++.|+-.|.++.-  +..|+.|+
T Consensus       193 aaRiaaELGADIVKv~y~~~~~~--g~~e~f~~vv~~~g~vpVvi-----aGG~k~-~~~e~L~~v~~ai--~~aGa~Gv  262 (304)
T PRK06852        193 AAGVAACLGADFVKVNYPKKEGA--NPAELFKEAVLAAGRTKVVC-----AGGSST-DPEEFLKQLYEQI--HISGASGN  262 (304)
T ss_pred             HHHHHHHHcCCEEEecCCCcCCC--CCHHHHHHHHHhCCCCcEEE-----eCCCCC-CHHHHHHHHHHHH--HHcCCcee
Confidence            46889999999998763212222  2457788888877 677654     577667 7777766655543  33899999


Q ss_pred             EEee
Q psy7930         100 VIGA  103 (146)
Q Consensus       100 VfG~  103 (146)
                      ++|=
T Consensus       263 ~~GR  266 (304)
T PRK06852        263 ATGR  266 (304)
T ss_pred             eech
Confidence            9994

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=92.72  E-value=2.4  Score=33.65  Aligned_cols=89  Identities=24%  Similarity=0.262  Sum_probs=60.4

Q ss_pred             cCHHH-HHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVAS-ALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~-a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .++.+ +..-.+.|++.+.+.+- -...|--|...+++++++.+++||.+      +| +.=|.       +|++.+.+.
T Consensus        30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~------~G-GI~~~-------ed~~~~~~~   95 (233)
T PRK00748         30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQV------GG-GIRSL-------ETVEALLDA   95 (233)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEE------cC-CcCCH-------HHHHHHHHc
Confidence            45555 44445679999999872 11124458899999999988888754      33 33333       456677778


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||+++++|.-.-+   |.+.++++.+..
T Consensus        96 Ga~~vilg~~~l~---~~~~l~ei~~~~  120 (233)
T PRK00748         96 GVSRVIIGTAAVK---NPELVKEACKKF  120 (233)
T ss_pred             CCCEEEECchHHh---CHHHHHHHHHHh
Confidence            9999999986644   345667776664

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=92.69  E-value=2.1  Score=34.92  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=68.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC-----CcccCHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF-----DFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g-----dF~Ys~~E~~~M~~dI~~   90 (146)
                      +.|++++..+...||+|+=+-+.+-     -...+++++.+...=.+.+-|-- |.+     +|.-+   .....+=++.
T Consensus        84 irs~edv~~~l~~Ga~kvviGs~~l-----~~p~l~~~i~~~~~~~i~vsld~-~~~~v~~~Gw~~~---~~~~~~~~~~  154 (241)
T PRK14024         84 IRDDESLEAALATGCARVNIGTAAL-----ENPEWCARVIAEHGDRVAVGLDV-RGHTLAARGWTRD---GGDLWEVLER  154 (241)
T ss_pred             CCCHHHHHHHHHCCCCEEEECchHh-----CCHHHHHHHHHHhhhhEEEEEEE-eccEeccCCeeec---CccHHHHHHH
Confidence            5789999999999999987665432     25677777765542112221111 111     23311   1233455677


Q ss_pred             HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      +.+.|++.+++=-.+.+|.   .|.+.++++.+.. ++|+.-
T Consensus       155 l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~-~ipvia  195 (241)
T PRK14024        155 LDSAGCSRYVVTDVTKDGTLTGPNLELLREVCART-DAPVVA  195 (241)
T ss_pred             HHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhC-CCCEEE
Confidence            8899999999999988864   7999999998875 566654

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=92.68  E-value=4.7  Score=34.65  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             ceeEEEecCHHHHHH----HHHcCCCEEEecCCC-----CCCC------CCC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930          10 TTLEVCVDSVASALA----AVRGGADRLELCAAL-----SEGG------LTP--TLGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~----A~~~GAdRIELc~~l-----~~GG------lTP--S~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      +.+-++..++++...    +++.|+|-|+|+-+-     .-+|      -.|  -..+++.+++.+++||.|=||+ -.-
T Consensus        57 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~-g~~  135 (318)
T TIGR00742        57 VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI-GID  135 (318)
T ss_pred             EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec-CCC
Confidence            578888888877544    445799999998642     1111      122  2456777777789999999998 221


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC--C----------CCcCHHHHHHHHHHhCCCCeEE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTG--E----------QEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~--d----------g~iD~~~~~~Li~~a~~~~vtF  129 (146)
                          ..++.+...+=++.+.+.|++.+.+=.=|.  +          +..|.+...++.+....+|++-
T Consensus       136 ----~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~  200 (318)
T TIGR00742       136 ----PLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI  200 (318)
T ss_pred             ----CcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE
Confidence                123344455667788899999987765542  1          1248888888888775677653

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=92.66  E-value=2  Score=36.98  Aligned_cols=108  Identities=15%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             HHHHHHHHcCCCEEEecCC--------C---------CCCCCCC------CHHHHHHHHhhCC----CcEEEEEccCCCC
Q psy7930          20 ASALAAVRGGADRLELCAA--------L---------SEGGLTP------TLGLYRVIKRLVL----VPVFVMIRVRAGF   72 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------l---------~~GGlTP------S~g~i~~~~~~~~----ipv~vMIRP~R~g   72 (146)
                      +.|..|+++|+|-|||..+        |         .-||- .      ...+++.+++.++    .++.|.+|= -+.
T Consensus       148 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~-s~~  225 (353)
T cd04735         148 EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRF-SPE  225 (353)
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEE-Ccc
Confidence            6788999999999999742        1         11442 2      2357888888876    677888886 444


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeee--cCC----CCcCHHHHHHHHHHhC-CCCeEE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGAL--TGE----QEIDIEFIRQLKTIIG-DRPITF  129 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L--~~d----g~iD~~~~~~Li~~a~-~~~vtF  129 (146)
                      +|.......+.+.+=++.+.+.|+|-+-++.=  +..    ...+.+..+.+.+..+ ++|+.-
T Consensus       226 ~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~  289 (353)
T cd04735         226 EPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIA  289 (353)
T ss_pred             cccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEE
Confidence            44333223344556667788899998877542  221    1113444455555443 456553

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=92.63  E-value=1.7  Score=39.31  Aligned_cols=102  Identities=17%  Similarity=0.059  Sum_probs=68.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +++..|.++|.|.+-++..+..---  ....++.++ ..+..+.+.|.. -.+.+ |+.+-+..   -++.+.++|+|.|
T Consensus       100 ~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~ak-~~G~~v~~~i~~-t~~p~-~~~~~~~~---~a~~l~~~Gad~I  171 (448)
T PRK12331        100 SFVQKSVENGIDIIRIFDALNDVRN--LETAVKATK-KAGGHAQVAISY-TTSPV-HTIDYFVK---LAKEMQEMGADSI  171 (448)
T ss_pred             HHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHHHH-HcCCeEEEEEEe-ecCCC-CCHHHHHH---HHHHHHHcCCCEE
Confidence            5668899999999999976644210  111233332 246677777776 44443 55555544   4555678899976


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      .+  -+.-|......+.+|+++.+   ++++-||-
T Consensus       172 ~i--~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~  204 (448)
T PRK12331        172 CI--KDMAGILTPYVAYELVKRIKEAVTVPLEVHT  204 (448)
T ss_pred             EE--cCCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            55  37778888889999988875   57788884

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=92.61  E-value=0.73  Score=40.33  Aligned_cols=73  Identities=22%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      .+.+++..|++.|+|=|=+..+  -...|..++...+.++++.+  ++||.+      .|++...        .||..+.
T Consensus       230 ~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~------dGGIr~g--------~Di~kaL  295 (351)
T cd04737         230 QSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIF------DSGVRRG--------EHVFKAL  295 (351)
T ss_pred             CCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEE------ECCCCCH--------HHHHHHH
Confidence            6899999999999999999753  12222334567888887776  477654      2334433        6788888


Q ss_pred             HcCCCEEEEee
Q psy7930          93 ESGADGFVIGA  103 (146)
Q Consensus        93 ~~GadG~VfG~  103 (146)
                      .+|||+|-+|=
T Consensus       296 alGA~~V~iGr  306 (351)
T cd04737         296 ASGADAVAVGR  306 (351)
T ss_pred             HcCCCEEEECH
Confidence            89999999983

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=92.61  E-value=0.79  Score=40.68  Aligned_cols=76  Identities=20%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +++|  -|.++|..|.+.|+|-|=+-.+  =...+.-|+...+.++++.+  ++||.+      .|++.+.        .
T Consensus       258 vKgV--~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~------dGGIr~G--------~  321 (383)
T cd03332         258 LKGI--LHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF------DSGVRTG--------A  321 (383)
T ss_pred             EecC--CCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE------eCCcCcH--------H
Confidence            3444  7899999999999999887642  11223456788888888766  477643      3446655        6


Q ss_pred             HHHHHHHcCCCEEEEe
Q psy7930          87 DCHQFVESGADGFVIG  102 (146)
Q Consensus        87 dI~~~~~~GadG~VfG  102 (146)
                      ||..+..+|||++-+|
T Consensus       322 Dv~KALaLGA~~v~iG  337 (383)
T cd03332         322 DIMKALALGAKAVLIG  337 (383)
T ss_pred             HHHHHHHcCCCEEEEc
Confidence            8999999999999998

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=92.60  E-value=0.94  Score=37.18  Aligned_cols=67  Identities=22%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +..|.+.|||-|-.-       ..++...++++.+...+||.+ |    ||-=.   +..+...+.+..+.++|++|+.+
T Consensus       162 ~~~a~~~GADyikt~-------~~~~~~~l~~~~~~~~iPVva-~----GGi~~---~~~~~~~~~i~~~~~aGa~Gia~  226 (258)
T TIGR01949       162 ARLGAELGADIVKTP-------YTGDIDSFRDVVKGCPAPVVV-A----GGPKT---NSDREFLQMIKDAMEAGAAGVAV  226 (258)
T ss_pred             HHHHHHHCCCEEecc-------CCCCHHHHHHHHHhCCCcEEE-e----cCCCC---CCHHHHHHHHHHHHHcCCcEEeh
Confidence            578889999999862       235788999999888999944 3    44211   12345567777888999999999


Q ss_pred             ee
Q psy7930         102 GA  103 (146)
Q Consensus       102 G~  103 (146)
                      |-
T Consensus       227 g~  228 (258)
T TIGR01949       227 GR  228 (258)
T ss_pred             hh
Confidence            94

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=92.56  E-value=1.1  Score=37.72  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930          20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +-+.+.+++|||-|||-=   +.              -..|+|.  .+.+++++++..++|+.+|--=  .-=|.|.-+.
T Consensus        33 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~--N~i~~~G~e~  110 (263)
T CHL00200         33 KALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYY--NPVLHYGINK  110 (263)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecc--cHHHHhCHHH
Confidence            345667889999999962   21              1456665  3678888887789998888642  1125555444


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEeee
Q psy7930          81 KEIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                      +      ++.++++|+||+.+=-|
T Consensus       111 F------~~~~~~aGvdgviipDL  128 (263)
T CHL00200        111 F------IKKISQAGVKGLIIPDL  128 (263)
T ss_pred             H------HHHHHHcCCeEEEecCC
Confidence            3      67889999999887544

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=92.43  E-value=0.87  Score=38.89  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +=+..+++.|++-|.+-..-..+..  ++....++++++.+++||..     -||  +.|.++.+.|.+      ..|+|
T Consensus       153 ~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~-----nGg--I~s~~da~~~l~------~~gad  219 (321)
T PRK10415        153 EIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIA-----NGD--ITDPLKARAVLD------YTGAD  219 (321)
T ss_pred             HHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEE-----eCC--CCCHHHHHHHHh------ccCCC
Confidence            4455688999999988654333322  46788999999999999754     355  345555554432      36999


Q ss_pred             EEEEe
Q psy7930          98 GFVIG  102 (146)
Q Consensus        98 G~VfG  102 (146)
                      ||.+|
T Consensus       220 gVmiG  224 (321)
T PRK10415        220 ALMIG  224 (321)
T ss_pred             EEEEC
Confidence            99999

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=92.40  E-value=0.19  Score=40.81  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCC-CcccCHHHH---HHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGF-DFVFSQAEK---EIMALDCHQ   90 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~g-dF~Ys~~E~---~~M~~dI~~   90 (146)
                      +-|.+++....+.||+|+=+.+..     -.+..+++++.+..+- .|.+-|-- |.| ....+....   -...+-++.
T Consensus        82 Irs~ed~~~ll~~Ga~~Vvigt~~-----~~~~~~l~~~~~~~g~~~ivvslD~-~~g~~v~~~gw~~~~~~~~~~~~~~  155 (229)
T PF00977_consen   82 IRSIEDAERLLDAGADRVVIGTEA-----LEDPELLEELAERYGSQRIVVSLDA-RDGYKVATNGWQESSGIDLEEFAKR  155 (229)
T ss_dssp             E-SHHHHHHHHHTT-SEEEESHHH-----HHCCHHHHHHHHHHGGGGEEEEEEE-EETEEEEETTTTEEEEEEHHHHHHH
T ss_pred             cCcHHHHHHHHHhCCCEEEeChHH-----hhchhHHHHHHHHcCcccEEEEEEe-eeceEEEecCccccCCcCHHHHHHH
Confidence            468999999999999999998741     2345678887776543 56666666 444 122111111   124455778


Q ss_pred             HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      +.+.|+..|++=-++.||+   +|.+.++++.+.. +.|++
T Consensus       156 ~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~-~~~vi  195 (229)
T PF00977_consen  156 LEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV-NIPVI  195 (229)
T ss_dssp             HHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH-SSEEE
T ss_pred             HHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc-CCCEE
Confidence            8999999999999999985   8999999999888 66654

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=92.34  E-value=0.84  Score=39.21  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCCEEEecCC-----------C------CCCCC-----CCCHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          19 VASALAAVRGGADRLELCAA-----------L------SEGGL-----TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~-----------l------~~GGl-----TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      .+.|..|.++|.|-|||..+           .      .-||.     --....++.+++.++.++.|.||- ..-|+..
T Consensus       140 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi-~~~D~~~  218 (353)
T cd02930         140 ARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRL-SMLDLVE  218 (353)
T ss_pred             HHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEe-cccccCC
Confidence            36778899999999999762           0      11331     112367888888887777788887 5445543


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      ...+.+.+.+=++.+.++|+|-+-+
T Consensus       219 ~g~~~~e~~~i~~~Le~~G~d~i~v  243 (353)
T cd02930         219 GGSTWEEVVALAKALEAAGADILNT  243 (353)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            2233444555566777889998877

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=92.27  E-value=0.24  Score=42.69  Aligned_cols=70  Identities=21%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCC-----CCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAA-----LSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~-----l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |.|++.|..|++.|++-|=|+-.     -..||.  .-++..++++++.+++||.+.+|-  +.            ..++
T Consensus        24 v~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~Ri--gh------------~~Ea   89 (293)
T PRK04180         24 VVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKARI--GH------------FVEA   89 (293)
T ss_pred             eCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeehh--hH------------HHHH
Confidence            56899999999999998877532     245664  568899999999999999998886  22            5788


Q ss_pred             HHHHHcCCCEE
Q psy7930          89 HQFVESGADGF   99 (146)
Q Consensus        89 ~~~~~~GadG~   99 (146)
                      +.+.++|+|=|
T Consensus        90 ~~L~~~GvDiI  100 (293)
T PRK04180         90 QILEALGVDYI  100 (293)
T ss_pred             HHHHHcCCCEE
Confidence            88999999977

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=92.27  E-value=0.71  Score=40.64  Aligned_cols=95  Identities=21%  Similarity=0.352  Sum_probs=56.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCC-CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGL-TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGl-TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+.+..|.+.|+|.|-+.......-. ......++++++..++||.+.     ||=   +.       +.+..+.+.|++
T Consensus       121 ~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~-----GGI---~~-------~n~~~~l~aGAd  185 (430)
T PRK07028        121 VKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVA-----GGL---DA-------ETAAKAVAAGAD  185 (430)
T ss_pred             HHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEE-----CCC---CH-------HHHHHHHHcCCC
Confidence            56678889999999966532110000 112468888888778888663     331   22       557888999999


Q ss_pred             EEEEee-ecCCCCcCHHHHHHHHHHhC-CCCeEE
Q psy7930          98 GFVIGA-LTGEQEIDIEFIRQLKTIIG-DRPITF  129 (146)
Q Consensus        98 G~VfG~-L~~dg~iD~~~~~~Li~~a~-~~~vtF  129 (146)
                      ||++|= +...... .+..+++.+..+ .++.-.
T Consensus       186 gv~vGsaI~~~~d~-~~~~~~l~~~i~~~~~~~~  218 (430)
T PRK07028        186 IVIVGGNIIKSADV-TEAARKIREAIDSGKPVKI  218 (430)
T ss_pred             EEEEChHHcCCCCH-HHHHHHHHHHHhccCCccc
Confidence            999983 3332211 344555555444 344333

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=92.21  E-value=1.3  Score=36.63  Aligned_cols=87  Identities=22%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +..|.+.|||-|-.-       .+++...++++.+...+||.+.     ||-=.-|.+++   .+.+..+.++||+|+.+
T Consensus       166 ~~~a~e~GAD~vKt~-------~~~~~~~l~~~~~~~~ipV~a~-----GGi~~~~~~~~---l~~v~~~~~aGA~Gis~  230 (267)
T PRK07226        166 ARVAAELGADIVKTN-------YTGDPESFREVVEGCPVPVVIA-----GGPKTDTDREF---LEMVRDAMEAGAAGVAV  230 (267)
T ss_pred             HHHHHHHCCCEEeeC-------CCCCHHHHHHHHHhCCCCEEEE-----eCCCCCCHHHH---HHHHHHHHHcCCcEEeh
Confidence            688889999999664       2346788999888778998543     44222233444   45566668899999999


Q ss_pred             eeecCCCCcCHHHHHHHHHHhC
Q psy7930         102 GALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       102 G~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |---=...=-...++.|....+
T Consensus       231 gr~i~~~~~p~~~~~~l~~~v~  252 (267)
T PRK07226        231 GRNVFQHEDPEAITRAISAVVH  252 (267)
T ss_pred             hhhhhcCCCHHHHHHHHHHHHh
Confidence            8532221113445555555443

>PRK04302 triosephosphate isomerase; Provisional

Probab=92.19  E-value=0.72  Score=37.07  Aligned_cols=73  Identities=14%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          43 GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        43 GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ++.|++..++.+++.+++|+..+=-. ....=.|+.+..      ++.++++|+||+.+|--.  .....+.+.++++.|
T Consensus        40 ~~~p~~~~l~~v~~~~~i~v~aq~~~-~~~~G~~tg~~~------~~~l~~~G~~~vii~~se--r~~~~~e~~~~v~~a  110 (223)
T PRK04302         40 AVAPQALDIRRVAEEVDIPVYAQHVD-PVEPGSHTGHIL------PEAVKDAGAVGTLINHSE--RRLTLADIEAVVERA  110 (223)
T ss_pred             EEECCHHHHHHHHHhcCCeEEeccCC-CCCCCCchhhhH------HHHHHHcCCCEEEEeccc--cccCHHHHHHHHHHH
Confidence            47799999999998888888764221 111011444433      788889999999999632  224445577777777


Q ss_pred             CC
Q psy7930         123 GD  124 (146)
Q Consensus       123 ~~  124 (146)
                      ..
T Consensus       111 ~~  112 (223)
T PRK04302        111 KK  112 (223)
T ss_pred             HH
Confidence            63

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=92.09  E-value=2.1  Score=35.35  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=72.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH----HHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI----MALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~----M~~dI~~~   91 (146)
                      +-|.+++....+.||+|+=|.+..     -....+++++.+ .+-.+.+-|=- |.| -++++.-.+.    ..+=++.+
T Consensus        82 Irs~e~~~~~l~~Ga~rvvigT~a-----~~~p~~l~~~~~-~~~~ivvslD~-k~g-~v~~~gw~~~~~~~~~e~~~~~  153 (241)
T PRK14114         82 IRSLDYAEKLRKLGYRRQIVSSKV-----LEDPSFLKFLKE-IDVEPVFSLDT-RGG-KVAFKGWLAEEEIDPVSLLKRL  153 (241)
T ss_pred             CCCHHHHHHHHHCCCCEEEECchh-----hCCHHHHHHHHH-hCCCEEEEEEc-cCC-EEeeCCCeecCCCCHHHHHHHH
Confidence            468899999999999999776532     246778888854 33235555555 444 2333221111    23346788


Q ss_pred             HHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          92 VESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      .++|+..|++=-++.||+   +|.+.++++.+.. +.|++
T Consensus       154 ~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~-~~pvi  192 (241)
T PRK14114        154 KEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA-EVKVF  192 (241)
T ss_pred             HhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC-CCCEE
Confidence            899999999999999986   8999999998875 45554

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=92.07  E-value=1  Score=39.79  Aligned_cols=105  Identities=16%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCcccCHH---HHHHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDFVFSQA---EKEIMALDCHQF   91 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF~Ys~~---E~~~M~~dI~~~   91 (146)
                      ++..|.+.|||=|=.--+  .|+ ......++.+.+      ..++|+.+|+-| ||+.+.=..+   +.+....-.+.+
T Consensus       151 sVedAlrLGAdAV~~tvy--~Gs-~~E~~ml~~l~~i~~ea~~~GlPlv~~~Yp-RG~~i~~~~d~~~~~d~Ia~AaRia  226 (348)
T PRK09250        151 SVEDALRLGAVAVGATIY--FGS-EESRRQIEEISEAFEEAHELGLATVLWSYL-RNSAFKKDGDYHTAADLTGQANHLA  226 (348)
T ss_pred             cHHHHHHCCCCEEEEEEe--cCC-HHHHHHHHHHHHHHHHHHHhCCCEEEEecc-cCcccCCcccccccHHHHHHHHHHH
Confidence            355589999996655433  442 122333433332      348999999999 9987642211   256778889999


Q ss_pred             HHcCCCEEEEeeecCCCC--------------------cCHHHHHHHHHHh--CCCCeEE
Q psy7930          92 VESGADGFVIGALTGEQE--------------------IDIEFIRQLKTII--GDRPITF  129 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~--------------------iD~~~~~~Li~~a--~~~~vtF  129 (146)
                      .++|||=|=.-.-++...                    =..++++..++.|  ++.||.|
T Consensus       227 aELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVvi  286 (348)
T PRK09250        227 ATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLIN  286 (348)
T ss_pred             HHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEE
Confidence            999999665554332222                    1334566667775  3667665

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=92.04  E-value=3.4  Score=32.67  Aligned_cols=85  Identities=14%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +.+..+.+.|+|.|.|...       ++..+++.+++ .++|+.+.+.+         .       ++++.+.+.|+|+|
T Consensus        71 ~~~~~~~~~g~d~v~l~~~-------~~~~~~~~~~~-~~i~~i~~v~~---------~-------~~~~~~~~~gad~i  126 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFG-------PPAEVVERLKA-AGIKVIPTVTS---------V-------EEARKAEAAGADAL  126 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCC-------CCHHHHHHHHH-cCCEEEEeCCC---------H-------HHHHHHHHcCCCEE
Confidence            4678888999999998432       66777777765 46777665544         2       44566777899999


Q ss_pred             EEeeecCCCC------cCHHHHHHHHHHhCCCCeEE
Q psy7930         100 VIGALTGEQE------IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus       100 VfG~L~~dg~------iD~~~~~~Li~~a~~~~vtF  129 (146)
                      .+......|.      .+.+.++++.+.. +.|+..
T Consensus       127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~  161 (236)
T cd04730         127 VAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIA  161 (236)
T ss_pred             EEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEE
Confidence            8833333332      2345566555433 455554

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=92.02  E-value=2.6  Score=34.01  Aligned_cols=96  Identities=16%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCC----CCCCCC-CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALS----EGGLTP-TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~----~GGlTP-S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .++=+-+.|.+++..|.+.|||-+=|-.=..    .|..+| ....++.+.+. .++||+.+     ||          +
T Consensus       103 ~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~Ai-----GG----------I  167 (211)
T PRK03512        103 LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAI-----GG----------I  167 (211)
T ss_pred             CEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE-----CC----------C
Confidence            4677788999999999999999998875332    233332 44567777666 48999886     44          1


Q ss_pred             HHHHHHHHHHcCCCEE-EEeeecCCCCcCHHHHHHHHHH
Q psy7930          84 MALDCHQFVESGADGF-VIGALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        84 M~~dI~~~~~~GadG~-VfG~L~~dg~iD~~~~~~Li~~  121 (146)
                      =.+++..+++.|++|| |++++-.... =.+++++|++.
T Consensus       168 ~~~ni~~l~~~Ga~GiAvisai~~~~d-~~~~~~~l~~~  205 (211)
T PRK03512        168 SLERAPAVLATGVGSIAVVSAITQAAD-WRAATAQLLEL  205 (211)
T ss_pred             CHHHHHHHHHcCCCEEEEhhHhhCCCC-HHHHHHHHHHH
Confidence            1267888889999998 4566654332 23344455553

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=92.02  E-value=1.8  Score=35.13  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=61.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +-|..-.+.||+++-+.+==..-|..+...+++.+.+.+.+|+.+      ||+..=        .+|++.+.+.||+-+
T Consensus        39 ~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~v------gGGir~--------~edv~~~l~~Ga~~v  104 (233)
T cd04723          39 DVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWV------DGGIRS--------LENAQEWLKRGASRV  104 (233)
T ss_pred             HHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEE------ecCcCC--------HHHHHHHHHcCCCeE
Confidence            445555667999999986212237889999999999988888754      444432        578899999999999


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhC
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |+|-.+-+   | +.++++++.-+
T Consensus       105 iigt~~~~---~-~~~~~~~~~~~  124 (233)
T cd04723         105 IVGTETLP---S-DDDEDRLAALG  124 (233)
T ss_pred             EEcceecc---c-hHHHHHHHhcC
Confidence            99987754   2 34445444443

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=92.01  E-value=3.6  Score=35.59  Aligned_cols=86  Identities=13%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             HHHHHHcCCCEEEecCCCCCC------CC--CCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALSEG------GL--TPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~G------Gl--TPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +....+.|.+.||.--.-..|      |.  .|+...++.+++.. +..+.+|++| --++           .+|++.+.
T Consensus        31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~~-----------~~dl~~a~   98 (337)
T PRK08195         31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLP-GIGT-----------VDDLKMAY   98 (337)
T ss_pred             HHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEecc-Cccc-----------HHHHHHHH
Confidence            445667899999994211112      32  34567777776554 5788899999 3221           25566777


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +.|+|.|-+..-  ...  .+.+.+.++.|+
T Consensus        99 ~~gvd~iri~~~--~~e--~~~~~~~i~~ak  125 (337)
T PRK08195         99 DAGVRVVRVATH--CTE--ADVSEQHIGLAR  125 (337)
T ss_pred             HcCCCEEEEEEe--cch--HHHHHHHHHHHH
Confidence            777776655531  112  234566666665

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=91.93  E-value=0.92  Score=39.29  Aligned_cols=81  Identities=31%  Similarity=0.345  Sum_probs=53.1

Q ss_pred             HHHHHHcC-CCEEEecC-CCCCCCCCCCHH--------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGG-ADRLELCA-ALSEGGLTPTLG--------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        22 a~~A~~~G-AdRIELc~-~l~~GGlTPS~g--------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +...++.| ||-+||+= ....-| -++++        +++.+++..++||.|=|-|           .++.|.+=.+.+
T Consensus       115 ~~~~~~~~~ad~ielNiScPnt~g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-----------~~~di~~iA~~~  182 (310)
T COG0167         115 ARLLEEAGDADAIELNISCPNTPG-GRALGQDPELLEKLLEAVKAATKVPVFVKLAP-----------NITDIDEIAKAA  182 (310)
T ss_pred             HHHHHhcCCCCEEEEEccCCCCCC-hhhhccCHHHHHHHHHHHHhcccCceEEEeCC-----------CHHHHHHHHHHH
Confidence            34456677 99999984 333222 22222        5556667779999999999           333444456788


Q ss_pred             HHcCCCEEEEeeecCCCC-cCHHH
Q psy7930          92 VESGADGFVIGALTGEQE-IDIEF  114 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~-iD~~~  114 (146)
                      .+.|+||++.===+-++. +|.+.
T Consensus       183 ~~~g~Dgl~~~NT~~~~~~id~~~  206 (310)
T COG0167         183 EEAGADGLIAINTTKSGMKIDLET  206 (310)
T ss_pred             HHcCCcEEEEEeeccccccccccc
Confidence            899999999754344454 66654

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=91.89  E-value=3.3  Score=35.36  Aligned_cols=110  Identities=19%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             eeEEEecCHHHH----HHHHHcCCCEEEecCCCC------CCC---C--CC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930          11 TLEVCVDSVASA----LAAVRGGADRLELCAALS------EGG---L--TP--TLGLYRVIKRLVLVPVFVMIRVRAGFD   73 (146)
Q Consensus        11 ~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~------~GG---l--TP--S~g~i~~~~~~~~ipv~vMIRP~R~gd   73 (146)
                      .+-++-.|+++.    ..+++.|+|-|||+-+=.      .|+   +  .|  ...+++.+++.+++||.|-||-  |  
T Consensus        68 ~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~--G--  143 (321)
T PRK10415         68 TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT--G--  143 (321)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc--c--
Confidence            467788788774    345567999999997521      111   1  12  2345556666678999988886  2  


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CCcCHHHHHHHHHHhCCCCeE
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~iD~~~~~~Li~~a~~~~vt  128 (146)
                      |.-+..   ...+=++.+.+.|+|.+.+-.-+.+    |..|.+.++++.+..+ .||.
T Consensus       144 ~~~~~~---~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~-iPVI  198 (321)
T PRK10415        144 WAPEHR---NCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVI  198 (321)
T ss_pred             ccCCcc---hHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC-CcEE
Confidence            222221   2223344578899999987665543    5688888888877553 4543

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=91.86  E-value=0.73  Score=40.22  Aligned_cols=74  Identities=30%  Similarity=0.379  Sum_probs=53.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC-----CCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGL-----TPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      +++||  -|.+++..|.+.|++-|=+-.+   ||+     -|+...+.++++.++  +||.+     -|| ...-     
T Consensus       229 ivKgv--~~~~da~~~~~~G~~~i~vs~h---GGr~~d~~~~~~~~L~~i~~~~~~~~~i~~-----dgG-ir~g-----  292 (356)
T PF01070_consen  229 IVKGV--LSPEDAKRAVDAGVDGIDVSNH---GGRQLDWGPPTIDALPEIRAAVGDDIPIIA-----DGG-IRRG-----  292 (356)
T ss_dssp             EEEEE---SHHHHHHHHHTT-SEEEEESG---TGTSSTTS-BHHHHHHHHHHHHTTSSEEEE-----ESS---SH-----
T ss_pred             EEEec--ccHHHHHHHHhcCCCEEEecCC---CcccCccccccccccHHHHhhhcCCeeEEE-----eCC-CCCH-----
Confidence            46888  8999999999999999988753   665     788888888888764  66643     122 3222     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         .||..+..+||+.+-+|
T Consensus       293 ---~Dv~kalaLGA~~v~ig  309 (356)
T PF01070_consen  293 ---LDVAKALALGADAVGIG  309 (356)
T ss_dssp             ---HHHHHHHHTT-SEEEES
T ss_pred             ---HHHHHHHHcCCCeEEEc
Confidence               68899999999999887

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=91.84  E-value=0.96  Score=38.98  Aligned_cols=70  Identities=21%  Similarity=0.288  Sum_probs=55.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecC----C-CCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCA----A-LSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~----~-l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |.|+++|..|+++||--+=-..    . -..||..  .++..|+++++.++|||.-.+|=  +.            ..++
T Consensus        17 v~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~ki--gh------------~~Ea   82 (287)
T TIGR00343        17 VVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRI--GH------------FVEA   82 (287)
T ss_pred             eCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeec--cH------------HHHH
Confidence            5689999999999995443221    1 1568874  58999999999999999999986  22            5788


Q ss_pred             HHHHHcCCCEE
Q psy7930          89 HQFVESGADGF   99 (146)
Q Consensus        89 ~~~~~~GadG~   99 (146)
                      +.+.++|+|=+
T Consensus        83 ~~L~~~GvDiI   93 (287)
T TIGR00343        83 QILEALGVDYI   93 (287)
T ss_pred             HHHHHcCCCEE
Confidence            88999999977

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=91.73  E-value=2.6  Score=36.92  Aligned_cols=114  Identities=13%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             EEEecCHHHHHHHHHcCCCEEEecCCCC------CCCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          13 EVCVDSVASALAAVRGGADRLELCAALS------EGGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        13 Evcv~s~~~a~~A~~~GAdRIELc~~l~------~GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+| -+.+++..|.++|+++|.+.-.-+      -=+.|+.  ...++.+.++   .++.|.+-|-- -.|.-.++..+.
T Consensus       119 ~l~-~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~-~fg~p~~~r~~~  196 (347)
T PLN02746        119 VLT-PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSC-VVGCPIEGPVPP  196 (347)
T ss_pred             EEc-CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEe-eecCCccCCCCH
Confidence            444 499999999999999999883211      1234553  2222233322   35666543422 222122223456


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFH  130 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFH  130 (146)
                      +.+.+=++.+.++|+|.|.+.  +--|..+...+.+|++..+   + .++.||
T Consensus       197 ~~l~~~~~~~~~~Gad~I~l~--DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H  247 (347)
T PLN02746        197 SKVAYVAKELYDMGCYEISLG--DTIGVGTPGTVVPMLEAVMAVVPVDKLAVH  247 (347)
T ss_pred             HHHHHHHHHHHHcCCCEEEec--CCcCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            677777888899999987664  6678888888888888774   2 356666

>KOG0538|consensus

Probab=91.72  E-value=1.1  Score=39.41  Aligned_cols=84  Identities=20%  Similarity=0.179  Sum_probs=60.4

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEc--cCCCCCcccCHHHHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIR--VRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIR--P~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      =+-+.+||+.|++.|++-|=+-.+  =.+.+.-.|...+.++.+.++-.|-|++-  - |-|             .||..
T Consensus       230 Gilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGV-R~G-------------~DVlK  295 (363)
T KOG0538|consen  230 GVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGV-RRG-------------TDVLK  295 (363)
T ss_pred             eecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCc-ccc-------------hHHHH
Confidence            455789999999999999977653  34556667899999999988533444442  3 344             68999


Q ss_pred             HHHcCCCEEEEe-----eecCCCCcCH
Q psy7930          91 FVESGADGFVIG-----ALTGEQEIDI  112 (146)
Q Consensus        91 ~~~~GadG~VfG-----~L~~dg~iD~  112 (146)
                      +..+||.||-+|     -|--+|+=-+
T Consensus       296 ALALGAk~VfiGRP~v~gLA~~Ge~GV  322 (363)
T KOG0538|consen  296 ALALGAKGVFIGRPIVWGLAAKGEAGV  322 (363)
T ss_pred             HHhcccceEEecCchheeeccccchhH
Confidence            999999999877     2444554333

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=91.70  E-value=1.1  Score=39.62  Aligned_cols=77  Identities=17%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +++  +.+.+++..|++.|++-|-+..+=  ...+..++...+.++++.++  +||.+      .|+..+.        .
T Consensus       233 vKG--v~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~------dGGIr~g--------~  296 (367)
T TIGR02708       233 VKG--PQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVF------DSGVRRG--------Q  296 (367)
T ss_pred             EeC--CCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEe------eCCcCCH--------H
Confidence            455  557999999999999999877631  11122234688888887763  67543      3445444        6


Q ss_pred             HHHHHHHcCCCEEEEee
Q psy7930          87 DCHQFVESGADGFVIGA  103 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~  103 (146)
                      ||..+..+|||++-+|=
T Consensus       297 Dv~KaLalGAd~V~igR  313 (367)
T TIGR02708       297 HVFKALASGADLVALGR  313 (367)
T ss_pred             HHHHHHHcCCCEEEEcH
Confidence            77778889999999984

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=91.66  E-value=5  Score=31.85  Aligned_cols=68  Identities=28%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC-cccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD-FVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd-F~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-+.++.++|+.=++.          .++..++.+++..++|+....|. ...+ -++-..    -.++++.++++|+|.
T Consensus        31 ~~a~~~~~~G~~~~~~----------~~~~~~~~i~~~~~iPil~~~~~-~~~~~~~~ig~----~~~~~~~a~~aGad~   95 (219)
T cd04729          31 AMALAAVQGGAVGIRA----------NGVEDIRAIRARVDLPIIGLIKR-DYPDSEVYITP----TIEEVDALAAAGADI   95 (219)
T ss_pred             HHHHHHHHCCCeEEEc----------CCHHHHHHHHHhCCCCEEEEEec-CCCCCCceeCC----CHHHHHHHHHcCCCE
Confidence            4466678899987773          66789999988889999664554 2211 111111    124789999999998


Q ss_pred             EEEe
Q psy7930          99 FVIG  102 (146)
Q Consensus        99 ~VfG  102 (146)
                      +++.
T Consensus        96 I~~~   99 (219)
T cd04729          96 IALD   99 (219)
T ss_pred             EEEe
Confidence            8775

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=91.63  E-value=4.3  Score=34.74  Aligned_cols=110  Identities=24%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             ceeEEEecCHHH----HHHHHHcCCCEEEecCCC------CCC-C--C--CC--CHHHHHHHHhhC--CCcEEEEEccCC
Q psy7930          10 TTLEVCVDSVAS----ALAAVRGGADRLELCAAL------SEG-G--L--TP--TLGLYRVIKRLV--LVPVFVMIRVRA   70 (146)
Q Consensus        10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l------~~G-G--l--TP--S~g~i~~~~~~~--~ipv~vMIRP~R   70 (146)
                      +.+-+.-.+++.    |..+++.|+|-|||+-+=      .-| |  |  .|  ...+++.+++.+  ++||.|=||+  
T Consensus        65 ~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~--  142 (312)
T PRK10550         65 VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL--  142 (312)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC--
Confidence            568888888754    556778899999999543      123 2  2  33  234555566666  4898888887  


Q ss_pred             CCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----CC-cCHHHHHHHHHHhCCCCeE
Q psy7930          71 GFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----QE-IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        71 ~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g~-iD~~~~~~Li~~a~~~~vt  128 (146)
                      |  |. +.+|.   .+=++.+.+.|+|.+.+-.=|..    |. +|.+.++++.+.. ++||.
T Consensus       143 g--~~-~~~~~---~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi  198 (312)
T PRK10550        143 G--WD-SGERK---FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVI  198 (312)
T ss_pred             C--CC-CchHH---HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEE
Confidence            3  21 22232   34456678899999999543432    22 5888888888765 35554

>PLN02803 beta-amylase

Probab=91.62  E-value=0.6  Score=43.37  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=54.5

Q ss_pred             CCCcEEEEEccCCCCCcccCHHHH---HHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCC
Q psy7930          58 VLVPVFVMIRVRAGFDFVFSQAEK---EIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        58 ~~ipv~vMIRP~R~gdF~Ys~~E~---~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      ..+||+||.=-    |-+=++..+   +.|..+++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  |++
T Consensus        84 ~~vpvyVMlPL----d~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK  159 (548)
T PLN02803         84 SGVPVFVMLPL----DTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLK  159 (548)
T ss_pred             CceeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCe
Confidence            46999999854    222222334   78999999999999999987    66654  67899999999999998  566


Q ss_pred             eEEeecccC
Q psy7930         127 ITFHRAFDV  135 (146)
Q Consensus       127 vtFHRAFD~  135 (146)
                      +--=+.|-+
T Consensus       160 lq~vmSFHq  168 (548)
T PLN02803        160 LQVVMSFHQ  168 (548)
T ss_pred             EEEEEEecc
Confidence            544444443

>PLN02591 tryptophan synthase

Probab=91.53  E-value=1.2  Score=37.20  Aligned_cols=69  Identities=23%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCC----CC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLT----PT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlT----PS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      -+....+..-.-|.+.+.....|.+    +. ...++.+++..++||.|=        |--+.      .+|++.+.++|
T Consensus       146 ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG--------FGI~~------~e~v~~~~~~G  211 (250)
T PLN02591        146 RMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG--------FGISK------PEHAKQIAGWG  211 (250)
T ss_pred             HHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe--------CCCCC------HHHHHHHHhcC
Confidence            3666777778899998877666652    33 334888888888998651        22221      25778889999


Q ss_pred             CCEEEEee
Q psy7930          96 ADGFVIGA  103 (146)
Q Consensus        96 adG~VfG~  103 (146)
                      |||+|+|=
T Consensus       212 ADGvIVGS  219 (250)
T PLN02591        212 ADGVIVGS  219 (250)
T ss_pred             CCEEEECH
Confidence            99999993

>smart00518 AP2Ec AP endonuclease family 2

Probab=91.52  E-value=3.1  Score=33.51  Aligned_cols=80  Identities=16%  Similarity=0.095  Sum_probs=54.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC--CCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCH-----HHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEG--GLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQ-----AEKEIMALDCH   89 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~-----~E~~~M~~dI~   89 (146)
                      .+...+.+.|.+-+||-..-..-  +...+...++++++   ..++++.+ .-| ...+++-.+     ..++.|++-|+
T Consensus        14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p-~~~nl~s~d~~~r~~~~~~l~~~i~   91 (273)
T smart00518       14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAP-YLINLASPDKEKVEKSIERLIDEIK   91 (273)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECC-ceecCCCCCHHHHHHHHHHHHHHHH
Confidence            56788999999999998654322  33345555555554   45788644 346 545555432     23456999999


Q ss_pred             HHHHcCCCEEEE
Q psy7930          90 QFVESGADGFVI  101 (146)
Q Consensus        90 ~~~~~GadG~Vf  101 (146)
                      .++++|++.+|+
T Consensus        92 ~A~~lGa~~vv~  103 (273)
T smart00518       92 RCEELGIKALVF  103 (273)
T ss_pred             HHHHcCCCEEEE
Confidence            999999999887

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=91.46  E-value=6.4  Score=31.71  Aligned_cols=107  Identities=10%  Similarity=0.009  Sum_probs=63.2

Q ss_pred             CHH-HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCC----Cccc-----C-HHHHHHHHH
Q psy7930          18 SVA-SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGF----DFVF-----S-QAEKEIMAL   86 (146)
Q Consensus        18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~g----dF~Y-----s-~~E~~~M~~   86 (146)
                      +++ .+..|.+.|-+-|||....   +.  ...-+++..+..++.+..+-=| .++    .+.+     + +.-.+.+++
T Consensus        16 ~l~~~l~~~a~~Gf~~VEl~~~~---~~--~~~~~~~~l~~~gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (258)
T PRK09997         16 DFLARFEKAAQCGFRGVEFMFPY---DY--DIEELKQVLASNKLEHTLHNLP-AGDWAAGERGIACIPGREEEFRDGVAA   89 (258)
T ss_pred             CHHHHHHHHHHhCCCEEEEcCCC---CC--CHHHHHHHHHHcCCcEEEEcCC-CCccccCcCccccCCCcHHHHHHHHHH
Confidence            555 5677889999999996521   12  3566666667778777543224 222    1111     1 222566888


Q ss_pred             HHHHHHHcCCCEEEE--eeecCCCCcC------HHHHHHHHHHhC--CCCeEEe
Q psy7930          87 DCHQFVESGADGFVI--GALTGEQEID------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        87 dI~~~~~~GadG~Vf--G~L~~dg~iD------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      -|+.++++|++-|++  |...++..-+      .+.++++.+.|.  |+.+.+|
T Consensus        90 ~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  143 (258)
T PRK09997         90 AIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIE  143 (258)
T ss_pred             HHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            899999999997654  3332221111      133455555543  7888886

>PRK04302 triosephosphate isomerase; Provisional

Probab=91.43  E-value=1.5  Score=35.17  Aligned_cols=75  Identities=25%  Similarity=0.369  Sum_probs=47.4

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCC-CCC---CCHHHHHH----HHhhC-CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEG-GLT---PTLGLYRV----IKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G-GlT---PS~g~i~~----~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      +|+.+.+.+..+.+.|.+-|.+...-..| |++   +....+++    +++.. ++||.+      ||+ +-++      
T Consensus       119 ~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~------Ggg-I~~~------  185 (223)
T PRK04302        119 VCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLC------GAG-ISTG------  185 (223)
T ss_pred             EEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEE------ECC-CCCH------
Confidence            79999999999999999999987631122 111   33333433    44422 456532      222 2233      


Q ss_pred             HHHHHHHHHcCCCEEEEe
Q psy7930          85 ALDCHQFVESGADGFVIG  102 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG  102 (146)
                       ++++.+.+.|+|||++|
T Consensus       186 -e~~~~~~~~gadGvlVG  202 (223)
T PRK04302        186 -EDVKAALELGADGVLLA  202 (223)
T ss_pred             -HHHHHHHcCCCCEEEEe
Confidence             45666788999999999

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=91.36  E-value=3.2  Score=35.87  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +.+++..|.+.|++.|-++.....--  .+...++.+++ .+..+.  +-+  --.|.|+++++..+   ++.+.+.|++
T Consensus        89 ~~~dl~~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~-~G~~v~--~~l--~~s~~~~~e~l~~~---a~~~~~~Ga~  158 (333)
T TIGR03217        89 TVHDLKAAYDAGARTVRVATHCTEAD--VSEQHIGMARE-LGMDTV--GFL--MMSHMTPPEKLAEQ---AKLMESYGAD  158 (333)
T ss_pred             CHHHHHHHHHCCCCEEEEEeccchHH--HHHHHHHHHHH-cCCeEE--EEE--EcccCCCHHHHHHH---HHHHHhcCCC
Confidence            78999999999999999987543321  23444555544 243332  222  12256777766554   4556788999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEe
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFH  130 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFH  130 (146)
                      .|  .+-+.-|....+.+.+++.+.+     +.++-||
T Consensus       159 ~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H  194 (333)
T TIGR03217       159 CV--YIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFH  194 (333)
T ss_pred             EE--EEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence            65  5668889999999999888875     2678888

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=91.27  E-value=2.4  Score=37.07  Aligned_cols=110  Identities=16%  Similarity=-0.010  Sum_probs=67.4

Q ss_pred             eEEEecC---HHHHHHHHHcCCCEEEecCCCCCC------CCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccC
Q psy7930          12 LEVCVDS---VASALAAVRGGADRLELCAALSEG------GLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        12 lEvcv~s---~~~a~~A~~~GAdRIELc~~l~~G------GlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      ..+++.+   .+++..|.+.|+++|.++...+.-      |.|+.  ...+..+.+.   .+..  |.+-+  .-.+.++
T Consensus        68 ~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~--v~~~~--ed~~r~~  143 (378)
T PRK11858         68 ASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY--VSFSA--EDASRTD  143 (378)
T ss_pred             eEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe--EEEEe--ccCCCCC
Confidence            4556655   889999999999999998643221      23331  1222222222   2443  34444  2223445


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH  130 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH  130 (146)
                      .+.+.   +=++.+.++|++.|.+-  +.-|......+.+++...+   +.++-||
T Consensus       144 ~~~l~---~~~~~~~~~Ga~~I~l~--DT~G~~~P~~v~~lv~~l~~~~~~~l~~H  194 (378)
T PRK11858        144 LDFLI---EFAKAAEEAGADRVRFC--DTVGILDPFTMYELVKELVEAVDIPIEVH  194 (378)
T ss_pred             HHHHH---HHHHHHHhCCCCEEEEe--ccCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            54444   45556778899987664  6678888888888887764   4677777

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=91.20  E-value=3.2  Score=30.44  Aligned_cols=96  Identities=23%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHcCCCEEEecCCC-CCCCC-CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVASALAAVRGGADRLELCAAL-SEGGL-TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l-~~GGl-TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ..+.+..+.++|++-+++-... ..-+. +.....++.+++..++|+.+.+.-....++..         .-.+.++++|
T Consensus        14 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~a~~~~~~g   84 (200)
T cd04722          14 PVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVD---------IAAAAARAAG   84 (200)
T ss_pred             HHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhh---------HHHHHHHHcC
Confidence            3677888899999999988632 22222 22224577777778899888776511121111         1157889999


Q ss_pred             CCEEEEeeecCCC-CcCHHHHHHHHHHh
Q psy7930          96 ADGFVIGALTGEQ-EIDIEFIRQLKTII  122 (146)
Q Consensus        96 adG~VfG~L~~dg-~iD~~~~~~Li~~a  122 (146)
                      +|++.++.-.... ....+.++.+.+..
T Consensus        85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~  112 (200)
T cd04722          85 ADGVEIHGAVGYLAREDLELIRELREAV  112 (200)
T ss_pred             CCEEEEeccCCcHHHHHHHHHHHHHHhc
Confidence            9999988655432 12455566666554

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=91.17  E-value=3.5  Score=34.84  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=67.5

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEE--E--E-ccCCCCCcc
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFV--M--I-RVRAGFDFV   75 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~v--M--I-RP~R~gdF~   75 (146)
                      +-..+-+.++...|.+.|.+.|-+....+.      =|.|+.  ...++.+.++   .++.|.+  +  . -| -.|  .
T Consensus        75 ~~~l~~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~-~~~--~  151 (287)
T PRK05692         75 YAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP-YEG--E  151 (287)
T ss_pred             EEEEecCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC-CCC--C
Confidence            334456999999999999999999964431      234442  2223333322   2444432  1  2 24 222  3


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                      ++.+   .+.+=++.+.++|+|.|.+  -+.-|......+.++++..+    +.++-||
T Consensus       152 ~~~~---~~~~~~~~~~~~G~d~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H  205 (287)
T PRK05692        152 VPPE---AVADVAERLFALGCYEISL--GDTIGVGTPGQVRAVLEAVLAEFPAERLAGH  205 (287)
T ss_pred             CCHH---HHHHHHHHHHHcCCcEEEe--ccccCccCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            4444   4445566677889996544  46778888888888877654    3667777

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=91.15  E-value=3.5  Score=35.65  Aligned_cols=102  Identities=11%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+.+++..|.+.|++.|-++.....-  -.+...++.+++ .+..|.+  -+  --.+.|+++++..+   ++.+.++|+
T Consensus        89 ~~~~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~-~G~~v~~--~l--~~a~~~~~e~l~~~---a~~~~~~Ga  158 (337)
T PRK08195         89 GTVDDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARE-LGMDTVG--FL--MMSHMAPPEKLAEQ---AKLMESYGA  158 (337)
T ss_pred             ccHHHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHH-CCCeEEE--EE--EeccCCCHHHHHHH---HHHHHhCCC
Confidence            37899999999999999988644331  123444444444 2333322  22  11245677776655   666778899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEe
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFH  130 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFH  130 (146)
                      +.|  .+-+.-|....+.+.+++.+.+     +.++-||
T Consensus       159 ~~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H  195 (337)
T PRK08195        159 QCV--YVVDSAGALLPEDVRDRVRALRAALKPDTQVGFH  195 (337)
T ss_pred             CEE--EeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            975  5557788888888888888774     4678888

>cd04732 HisA HisA

Probab=91.15  E-value=5.4  Score=31.50  Aligned_cols=89  Identities=26%  Similarity=0.300  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+-|..-.+.|++.+-+-+- -..+|......+++.+++.+++|+.+      +| ..-+.       +|++.+.+.|||
T Consensus        32 ~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~------~G-gI~~~-------e~~~~~~~~Gad   97 (234)
T cd04732          32 VEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV------GG-GIRSL-------EDIERLLDLGVS   97 (234)
T ss_pred             HHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEE------eC-CcCCH-------HHHHHHHHcCCC
Confidence            34555566789999999842 12234556788999999988888754      33 34453       455556668999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                      .+++|-..-.   |.+.++++.+..+.
T Consensus        98 ~vvigs~~l~---dp~~~~~i~~~~g~  121 (234)
T cd04732          98 RVIIGTAAVK---NPELVKELLKEYGG  121 (234)
T ss_pred             EEEECchHHh---ChHHHHHHHHHcCC
Confidence            9999876532   46667777776543

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=91.11  E-value=1.2  Score=37.40  Aligned_cols=64  Identities=16%  Similarity=-0.024  Sum_probs=41.2

Q ss_pred             CCCEEEecCC-CCCCCC-----CC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc--CCCE
Q psy7930          29 GADRLELCAA-LSEGGL-----TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES--GADG   98 (146)
Q Consensus        29 GAdRIELc~~-l~~GGl-----TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~--GadG   98 (146)
                      |||-|||+-+ ....|.     .|  -..+++.+++.+++||.|=||| -   +  +..++..   =.+.+.+.  |+||
T Consensus       119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p-~---~--~~~~~~~---~a~~l~~~~~G~~g  189 (294)
T cd04741         119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPP-Y---T--DPAQFDT---LAEALNAFACPISF  189 (294)
T ss_pred             cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCC-C---C--CHHHHHH---HHHHHhccccCCcE
Confidence            7999999743 222222     22  2345666667779999999999 2   2  4445443   33445667  9999


Q ss_pred             EEE
Q psy7930          99 FVI  101 (146)
Q Consensus        99 ~Vf  101 (146)
                      |+.
T Consensus       190 i~~  192 (294)
T cd04741         190 ITA  192 (294)
T ss_pred             EEE
Confidence            995

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=91.08  E-value=2.1  Score=35.05  Aligned_cols=104  Identities=19%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCC------CCCCCCH------HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSE------GGLTPTL------GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS~------g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      -+.+++..|.+.|.++|-++...+.      =|.|+..      ..++.+++ .++  .|.+-+  .-.+.++.+++.. 
T Consensus        70 ~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~--~v~~~~--~~~~~~~~~~~~~-  143 (259)
T cd07939          70 AVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKD-RGL--FVSVGA--EDASRADPDFLIE-  143 (259)
T ss_pred             CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCC--eEEEee--ccCCCCCHHHHHH-
Confidence            5788999999999999999853211      1233332      12222222 244  344554  2233455555544 


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930          85 ALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH  130 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH  130 (146)
                        =++.+.++|++.|.+  -+.-|....+.+.+++...+   +.++-||
T Consensus       144 --~~~~~~~~G~~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H  188 (259)
T cd07939         144 --FAEVAQEAGADRLRF--ADTVGILDPFTTYELIRRLRAATDLPLEFH  188 (259)
T ss_pred             --HHHHHHHCCCCEEEe--CCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence              455667889998655  37778888899999888765   4677777

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]

Probab=90.96  E-value=5.7  Score=31.55  Aligned_cols=101  Identities=19%  Similarity=0.153  Sum_probs=66.5

Q ss_pred             cCHH-HHHHHHHcCCCEEEecCCCCCCCCCCC----HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH-----HHHHHH
Q psy7930          17 DSVA-SALAAVRGGADRLELCAALSEGGLTPT----LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE-----KEIMAL   86 (146)
Q Consensus        17 ~s~~-~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E-----~~~M~~   86 (146)
                      .+++ -...+.+.|-+-+||..    ++.-|.    ...++.+.+..++.+...... ... |.=.+++     ++.+++
T Consensus        15 ~~l~~~l~~~~~~G~~gvEi~~----~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~-~~~-~~~~~~~~~~~~~~~~~~   88 (274)
T COG1082          15 LPLEEILRKAAELGFDGVELSP----GDLFPADYKELAELKELLADYGLEITSLAPF-SNN-LLSPDEEEREEALEELKR   88 (274)
T ss_pred             CCHHHHHHHHHHhCCCeEecCC----cccCCchhhhHHHHHHHHHHcCcEEEeeccc-CCC-cCCCchhhHHHHHHHHHH
Confidence            4444 44678888999999986    444443    577777777778887665544 222 3333332     888999


Q ss_pred             HHHHHHHcCCCEEEEee--ecCCCC-----cC----HHHHHHHHHHhC
Q psy7930          87 DCHQFVESGADGFVIGA--LTGEQE-----ID----IEFIRQLKTIIG  123 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~--L~~dg~-----iD----~~~~~~Li~~a~  123 (146)
                      -|+.++++|++.+|+-.  ......     .+    .+.+.+|.+.|+
T Consensus        89 ~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~  136 (274)
T COG1082          89 AIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAE  136 (274)
T ss_pred             HHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence            88899999999988444  333322     12    566777777765

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=90.95  E-value=2.1  Score=34.53  Aligned_cols=71  Identities=30%  Similarity=0.433  Sum_probs=52.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.|++++..|.+.|||-|=+=   ..+  ..+...++.+++..  ++|+.    | -||=          -.+++..+.+
T Consensus       111 ~~t~~E~~~A~~~Gad~vk~F---pa~--~~G~~~l~~l~~~~~~~ipvv----a-iGGI----------~~~n~~~~~~  170 (206)
T PRK09140        111 VATPTEAFAALRAGAQALKLF---PAS--QLGPAGIKALRAVLPPDVPVF----A-VGGV----------TPENLAPYLA  170 (206)
T ss_pred             cCCHHHHHHHHHcCCCEEEEC---CCC--CCCHHHHHHHHhhcCCCCeEE----E-ECCC----------CHHHHHHHHH
Confidence            788999999999999999872   222  23477888888877  37764    4 5661          2278899999


Q ss_pred             cCCCEEEEe-eecC
Q psy7930          94 SGADGFVIG-ALTG  106 (146)
Q Consensus        94 ~GadG~VfG-~L~~  106 (146)
                      +|++++.+| .|..
T Consensus       171 aGa~~vav~s~l~~  184 (206)
T PRK09140        171 AGAAGFGLGSALYR  184 (206)
T ss_pred             CCCeEEEEehHhcc
Confidence            999999854 4543

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=90.85  E-value=2.7  Score=34.61  Aligned_cols=100  Identities=18%  Similarity=0.252  Sum_probs=66.5

Q ss_pred             HHHHHHcCCCEEEe--------cCCCCCCCCCCCHHHHHH---HHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLEL--------CAALSEGGLTPTLGLYRV---IKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        22 a~~A~~~GAdRIEL--------c~~l~~GGlTPS~g~i~~---~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +....+.|++=|-+        |.++..-.+-|.-..++.   +++..+  .++.|+-|-   -.|.-...-++.-.+-.
T Consensus        90 v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART---Da~~~~~~~~~eai~Ra  166 (243)
T cd00377          90 VRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART---DALLAGEEGLDEAIERA  166 (243)
T ss_pred             HHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc---CchhccCCCHHHHHHHH
Confidence            44556789999999        888755556555444444   444443  367777773   11221122356667778


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930          89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH  130 (146)
                      +.++++|||++.+=.++     |.+.++++.+.. +.|+.+.
T Consensus       167 ~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~~-~~Pl~~~  202 (243)
T cd00377         167 KAYAEAGADGIFVEGLK-----DPEEIRAFAEAP-DVPLNVN  202 (243)
T ss_pred             HHHHHcCCCEEEeCCCC-----CHHHHHHHHhcC-CCCEEEE
Confidence            89999999998875554     788899988874 5677665

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=90.85  E-value=1.3  Score=36.59  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=48.7

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +.++=+..++++|||-|-+- ....|+-.+....++++++.++ +||..     -||=|  |.++       +..+.+.|
T Consensus       149 ~~~~~a~~l~~aGad~i~Vd-~~~~g~~~a~~~~I~~i~~~~~~ipIIg-----NGgI~--s~ed-------a~e~l~~G  213 (231)
T TIGR00736       149 DELIDALNLVDDGFDGIHVD-AMYPGKPYADMDLLKILSEEFNDKIIIG-----NNSID--DIES-------AKEMLKAG  213 (231)
T ss_pred             hHHHHHHHHHHcCCCEEEEe-eCCCCCchhhHHHHHHHHHhcCCCcEEE-----ECCcC--CHHH-------HHHHHHhC
Confidence            44577888999999999884 3333432257889999999885 88643     36644  4444       44444469


Q ss_pred             CCEEEEe
Q psy7930          96 ADGFVIG  102 (146)
Q Consensus        96 adG~VfG  102 (146)
                      ||||-+|
T Consensus       214 Ad~Vmvg  220 (231)
T TIGR00736       214 ADFVSVA  220 (231)
T ss_pred             CCeEEEc
Confidence            9999987

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=90.83  E-value=2.5  Score=36.73  Aligned_cols=105  Identities=16%  Similarity=0.030  Sum_probs=65.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCC------CCCCC--HH----HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEG------GLTPT--LG----LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~G------GlTPS--~g----~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      --+.+++..|.+.|+++|.++...+.-      |.|+.  ..    .++.+++ .+..|  -+-+  ...+.++.+.+..
T Consensus        71 r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~-~G~~v--~~~~--eda~r~~~~~l~~  145 (363)
T TIGR02090        71 RALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE-HGLIV--EFSA--EDATRTDIDFLIK  145 (363)
T ss_pred             ccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCEE--EEEE--eecCCCCHHHHHH
Confidence            347899999999999999997543211      33431  22    2222222 24433  3333  1123445555554


Q ss_pred             HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930          84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH  130 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH  130 (146)
                      +   ++.+.++|++.|.+-  +.-|....+.+.++++..+   +.++-||
T Consensus       146 ~---~~~~~~~g~~~i~l~--DT~G~~~P~~v~~li~~l~~~~~~~l~~H  190 (363)
T TIGR02090       146 V---FKRAEEAGADRINIA--DTVGVLTPQKMEELIKKLKENVKLPISVH  190 (363)
T ss_pred             H---HHHHHhCCCCEEEEe--CCCCccCHHHHHHHHHHHhcccCceEEEE
Confidence            4   566778999986553  6678888889999988875   4667777

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=90.76  E-value=2.2  Score=33.99  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhCCCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++..+...|||=|||.-.+-.+   .+.    ..++.+++..++|+.+-+|++ -||.|..++++.-.+   ++.+.+.|
T Consensus        15 ~~~~~~~~~~D~vElRlD~l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~~   88 (224)
T PF01487_consen   15 ELEEAESSGADAVELRLDYLEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL---LERAIRLG   88 (224)
T ss_dssp             HHHHHHHTTTSEEEEEGGGSTT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH---HHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEEeccccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH---HHHHHHcC
Confidence            3444555599999999876655   443    455666666799999999972 256676666555544   45566677


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhCCCC--eEEeecccCCCCc
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDRP--ITFHRAFDVVREP  139 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~--vtFHRAFD~~~d~  139 (146)
                      ++.+-+=.=    ..+......+...-++.+  +.+| =|+.+++.
T Consensus        89 ~d~iDiE~~----~~~~~~~~~~~~~~~~~~iI~S~H-~f~~tp~~  129 (224)
T PF01487_consen   89 PDYIDIELD----LFPDDLKSRLAARKGGTKIILSYH-DFEKTPSW  129 (224)
T ss_dssp             SSEEEEEGG----CCHHHHHHHHHHHHTTSEEEEEEE-ESS---TH
T ss_pred             CCEEEEEcc----cchhHHHHHHHHhhCCCeEEEEec-cCCCCCCH
Confidence            888877321    122222223344445555  4555 57777654

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=90.65  E-value=3.1  Score=37.36  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=57.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      .++=+-+-|.+++..|.+.|||.|-+-.-.    ..+ .+| ....++.+.+..++||+.+     || -.         
T Consensus       391 ~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~ai-----GG-I~---------  454 (502)
T PLN02898        391 KIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKAN-NKTIGLDGLREVCEASKLPVVAI-----GG-IS---------  454 (502)
T ss_pred             CEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCC-CCCCCHHHHHHHHHcCCCCEEEE-----CC-CC---------
Confidence            467788899999999999999999875322    122 223 5788888888889998876     44 11         


Q ss_pred             HHHHHHHHHcCCC---EEEEe
Q psy7930          85 ALDCHQFVESGAD---GFVIG  102 (146)
Q Consensus        85 ~~dI~~~~~~Gad---G~VfG  102 (146)
                      .+++..++++|++   ||.++
T Consensus       455 ~~~~~~~~~~G~~~~~gvav~  475 (502)
T PLN02898        455 ASNAASVMESGAPNLKGVAVV  475 (502)
T ss_pred             HHHHHHHHHcCCCcCceEEEE
Confidence            1567889999999   98665

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=90.42  E-value=1.4  Score=41.05  Aligned_cols=66  Identities=24%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+..+.+.|||+|=||+  ..|+++|.  ..+++.+++.+++||++.--- ..|--+          .-...+.++|||
T Consensus       158 ~~a~~l~~~Gad~I~i~D--t~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hn-t~Gla~----------An~laAv~aGad  224 (592)
T PRK09282        158 ELAKELEEMGCDSICIKD--MAGLLTPYAAYELVKALKEEVDLPVQLHSHC-TSGLAP----------MTYLKAVEAGVD  224 (592)
T ss_pred             HHHHHHHHcCCCEEEECC--cCCCcCHHHHHHHHHHHHHhCCCeEEEEEcC-CCCcHH----------HHHHHHHHhCCC
Confidence            457788899999999999  47999994  678999998888898887665 444211          234455677876


Q ss_pred             E
Q psy7930          98 G   98 (146)
Q Consensus        98 G   98 (146)
                      -
T Consensus       225 ~  225 (592)
T PRK09282        225 I  225 (592)
T ss_pred             E
Confidence            3

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=90.41  E-value=2.5  Score=36.16  Aligned_cols=73  Identities=21%  Similarity=0.205  Sum_probs=49.4

Q ss_pred             CHHHHHHHHH-cCCCEEEecCCC-----CCCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          18 SVASALAAVR-GGADRLELCAAL-----SEGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        18 s~~~a~~A~~-~GAdRIELc~~l-----~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +.+.+..+.+ .+||-+||.-+.     ...|-+ ++    ..++.+++.+++||.+=+.+     |..|       .++
T Consensus       128 ~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~-df~~~~~~i~~l~~~~~vPVivK~~g-----~g~s-------~~~  194 (326)
T cd02811         128 GVEEARRAVEMIEADALAIHLNPLQEAVQPEGDR-DFRGWLERIEELVKALSVPVIVKEVG-----FGIS-------RET  194 (326)
T ss_pred             CHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCc-CHHHHHHHHHHHHHhcCCCEEEEecC-----CCCC-------HHH
Confidence            5666665555 689999996432     112322 24    56777888889998865555     3334       477


Q ss_pred             HHHHHHcCCCEEEEee
Q psy7930          88 CHQFVESGADGFVIGA  103 (146)
Q Consensus        88 I~~~~~~GadG~VfG~  103 (146)
                      ++.+.+.|+|+|+++-
T Consensus       195 a~~l~~~Gvd~I~vsG  210 (326)
T cd02811         195 AKRLADAGVKAIDVAG  210 (326)
T ss_pred             HHHHHHcCCCEEEECC
Confidence            8888999999999754

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=90.40  E-value=1.5  Score=38.63  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=57.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC------------------CCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG------------------LTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG------------------lTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      ..+..|.+.|||=|-..=-=..++                  +..+...++.+.+.+   .+||.  |   .||.=. ++
T Consensus       221 ~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVv--i---AGG~k~-~~  294 (348)
T PRK09250        221 QANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLI--N---SGGASK-GE  294 (348)
T ss_pred             HHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEE--E---eCCCCC-CH
Confidence            347889999999998763111111                  224455666667766   56654  4   466566 77


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHH
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQL  118 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~L  118 (146)
                      .|+-.|.+++-.=.+.|+.|+++|= |-=+.=|.++++-|
T Consensus       295 ~e~L~~v~~a~~~i~aGa~Gv~iGR-NIfQ~~~~ea~~~~  333 (348)
T PRK09250        295 DDLLDAVRTAVINKRAGGMGLIIGR-KAFQRPMAEGVKLL  333 (348)
T ss_pred             HHHHHHHHHHHHhhhcCCcchhhch-hhhcCCcHHHHHHH
Confidence            7877776666444779999999994 22223466666433

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=90.35  E-value=1.7  Score=36.03  Aligned_cols=69  Identities=32%  Similarity=0.436  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCCCEEEecCCC----------------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          20 ASALAAVRGGADRLELCAAL----------------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l----------------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      +-+..++++|||-|.+...+                ..||++++      ...++++++.+++||..     -||  .+|
T Consensus       170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~-----~GG--I~~  242 (296)
T cd04740         170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIG-----VGG--IAS  242 (296)
T ss_pred             HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEE-----ECC--CCC
Confidence            34667899999999885321                12566543      47888888888888754     244  233


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .       +|+..+.++|||+|-+|
T Consensus       243 ~-------~da~~~l~~GAd~V~ig  260 (296)
T cd04740         243 G-------EDALEFLMAGASAVQVG  260 (296)
T ss_pred             H-------HHHHHHHHcCCCEEEEc
Confidence            3       45555667899999988

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=90.32  E-value=1.3  Score=39.83  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecC-------CCCCCCC-CCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCA-------ALSEGGL-TPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~-------~l~~GGl-TPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      =.+.|.+++..+.+.|||-|-..-       .=..-|. .|....+.++.+..   ++||.    +  .|+..++     
T Consensus       275 g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi----a--dGGi~~~-----  343 (486)
T PRK05567        275 GNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI----A--DGGIRYS-----  343 (486)
T ss_pred             eccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE----E--cCCCCCH-----
Confidence            456778999999999999997521       1111121 46677777666643   56643    3  3446655     


Q ss_pred             HHHHHHHHHHHcCCCEEEEeee
Q psy7930          83 IMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L  104 (146)
                         .||..+..+|||.+++|-+
T Consensus       344 ---~di~kAla~GA~~v~~G~~  362 (486)
T PRK05567        344 ---GDIAKALAAGASAVMLGSM  362 (486)
T ss_pred             ---HHHHHHHHhCCCEEEECcc
Confidence               7889999999999999965

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=90.30  E-value=1.9  Score=36.99  Aligned_cols=66  Identities=21%  Similarity=0.248  Sum_probs=45.7

Q ss_pred             HHHHHHcCCCEEEecCCCC-CCCCCCC---------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALS-EGGLTPT---------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~-~GGlTPS---------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      +..++++|++-|.+=..-. ..|.+|+         +..++++++.+ ++||..     -||  +.|.++++.+.+    
T Consensus       157 ~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~-----nGg--I~s~eda~~~l~----  225 (333)
T PRK11815        157 VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEI-----NGG--IKTLEEAKEHLQ----  225 (333)
T ss_pred             HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEE-----ECC--cCCHHHHHHHHh----
Confidence            4567789999998764322 3466643         77888888875 888743     255  456666666553    


Q ss_pred             HHHcCCCEEEEe
Q psy7930          91 FVESGADGFVIG  102 (146)
Q Consensus        91 ~~~~GadG~VfG  102 (146)
                          |+|||.+|
T Consensus       226 ----~aDgVmIG  233 (333)
T PRK11815        226 ----HVDGVMIG  233 (333)
T ss_pred             ----cCCEEEEc
Confidence                69999998

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=90.29  E-value=1.7  Score=38.62  Aligned_cols=74  Identities=23%  Similarity=0.284  Sum_probs=55.0

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      +++||  -|.+++..|.+.|+|-|-+-.   .||..     |+...+.++.+.+  ++||.+      .|++...     
T Consensus       249 ivKgV--~s~~dA~~a~~~Gvd~I~Vs~---hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~------dGGIr~g-----  312 (381)
T PRK11197        249 VIKGI--LDPEDARDAVRFGADGIVVSN---HGGRQLDGVLSSARALPAIADAVKGDITILA------DSGIRNG-----  312 (381)
T ss_pred             EEEec--CCHHHHHHHHhCCCCEEEECC---CCCCCCCCcccHHHHHHHHHHHhcCCCeEEe------eCCcCcH-----
Confidence            35666  899999999999999998654   36643     4566666666655  477654      3446554     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         .||..+..+||+++-+|
T Consensus       313 ---~Di~KALaLGA~~V~iG  329 (381)
T PRK11197        313 ---LDVVRMIALGADTVLLG  329 (381)
T ss_pred             ---HHHHHHHHcCcCceeEh
Confidence               68899999999999998

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=90.26  E-value=7.3  Score=33.69  Aligned_cols=89  Identities=16%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             HHHHHcCCCEEEec-------CCCCCC-CCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          23 LAAVRGGADRLELC-------AALSEG-GLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        23 ~~A~~~GAdRIELc-------~~l~~G-GlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      ....+.|.+.||.-       +.+..| ...|....++.+++.. +..+.+|++| --+    +       .+|++.+.+
T Consensus        31 ~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p-g~~----~-------~~dl~~a~~   98 (333)
T TIGR03217        31 AALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP-GIG----T-------VHDLKAAYD   98 (333)
T ss_pred             HHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc-Ccc----C-------HHHHHHHHH
Confidence            44567799999994       223222 1235667777777655 5778889999 222    1       356777778


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCe
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .|+|.|-+..  .....  +..++.++.++  |+.+
T Consensus        99 ~gvd~iri~~--~~~e~--d~~~~~i~~ak~~G~~v  130 (333)
T TIGR03217        99 AGARTVRVAT--HCTEA--DVSEQHIGMARELGMDT  130 (333)
T ss_pred             CCCCEEEEEe--ccchH--HHHHHHHHHHHHcCCeE
Confidence            8888766554  22222  34567777776  4443

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=90.25  E-value=1.5  Score=36.53  Aligned_cols=87  Identities=29%  Similarity=0.340  Sum_probs=54.6

Q ss_pred             HHHHHHHHcCCCEEEecCCC----------------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          20 ASALAAVRGGADRLELCAAL----------------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l----------------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      +-+..++++|+|-|.+-..+                ..||++++      ...+.++++.+++||..     -||  +.|
T Consensus       173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~-----~GG--I~s  245 (300)
T TIGR01037       173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIG-----VGG--ITS  245 (300)
T ss_pred             HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEE-----ECC--CCC
Confidence            44667889999999985321                23677743      36778888888888754     255  333


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHH
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~  120 (146)
                      .+       |+..+.+.|||+|.+| .+-.++.+=....+.|.+
T Consensus       246 ~~-------da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~  282 (300)
T TIGR01037       246 FE-------DALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIA  282 (300)
T ss_pred             HH-------HHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHH
Confidence            43       3444556899999998 333455443444444433

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK12677 xylose isomerase; Provisional

Probab=90.22  E-value=3.7  Score=36.17  Aligned_cols=104  Identities=15%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCCEEEecCC-CCCCCCCCC-----HHHHHHHHhhCCCcEEEEE-c----c-CCCCCcccCHHH-----HH
Q psy7930          20 ASALAAVRGGADRLELCAA-LSEGGLTPT-----LGLYRVIKRLVLVPVFVMI-R----V-RAGFDFVFSQAE-----KE   82 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~-l~~GGlTPS-----~g~i~~~~~~~~ipv~vMI-R----P-~R~gdF~Ys~~E-----~~   82 (146)
                      +.+..+.+.|++-|||... +..=+.++.     ..-+++..+..++.|..+- +    | -..|+|+-.+.+     ++
T Consensus        35 E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~  114 (384)
T PRK12677         35 EAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALR  114 (384)
T ss_pred             HHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHH
Confidence            4556677889999999742 322344443     4456666666788765432 1    1 123568876553     66


Q ss_pred             HHHHHHHHHHHcCCCEEEE--eeecC--CCCcCH--------HHHHHHHHHhC
Q psy7930          83 IMALDCHQFVESGADGFVI--GALTG--EQEIDI--------EFIRQLKTIIG  123 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~Vf--G~L~~--dg~iD~--------~~~~~Li~~a~  123 (146)
                      .+++-|+.++++|++-||+  |....  +++.|.        +.+++|.+.|.
T Consensus       115 ~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~  167 (384)
T PRK12677        115 KVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVK  167 (384)
T ss_pred             HHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999886  32211  233442        44556677774

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=90.16  E-value=1.5  Score=39.86  Aligned_cols=74  Identities=26%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCC--CCC--------CCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEG--GLT--------PTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~G--GlT--------PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.|.+++..+.++|||-|-..-  ..|  ++|        |....+..+.+.   .++||.    |  .|+..++    
T Consensus       289 ~V~t~~~a~~~~~aGad~I~vg~--g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vI----a--dGGi~~~----  356 (495)
T PTZ00314        289 NVVTADQAKNLIDAGADGLRIGM--GSGSICITQEVCAVGRPQASAVYHVARYARERGVPCI----A--DGGIKNS----  356 (495)
T ss_pred             CcCCHHHHHHHHHcCCCEEEECC--cCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEE----e--cCCCCCH----
Confidence            46778999999999999887632  222  244        655565555443   466753    3  3335544    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeee
Q psy7930          82 EIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                          .||..+..+||+++++|=+
T Consensus       357 ----~di~kAla~GA~~Vm~G~~  375 (495)
T PTZ00314        357 ----GDICKALALGADCVMLGSL  375 (495)
T ss_pred             ----HHHHHHHHcCCCEEEECch
Confidence                6888999999999999965

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=90.13  E-value=1.1  Score=37.21  Aligned_cols=80  Identities=28%  Similarity=0.371  Sum_probs=46.4

Q ss_pred             eeEEEecC---HHHHH---HHHHcCCCEEEecC---CCCCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930          11 TLEVCVDS---VASAL---AAVRGGADRLELCA---ALSEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        11 ~lEvcv~s---~~~a~---~A~~~GAdRIELc~---~l~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~   75 (146)
                      ++=+...+   .++..   ...+.|||=|||+=   |.. |+-++.      ..+++.+++..++||.|=+-|     +.
T Consensus       100 i~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p-----~~  173 (295)
T PF01180_consen  100 IASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-GGRPFGQDPELVAEIVRAVREAVDIPVFVKLSP-----NF  173 (295)
T ss_dssp             EEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-S-----TS
T ss_pred             EEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-CccccccCHHHHHHHHHHHHhccCCCEEEEecC-----CC
Confidence            44455555   33322   23348999999973   333 444433      234555556679999999999     33


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      .+...+..    +..+.+.|++||+
T Consensus       174 ~~~~~~~~----~~~~~~~g~~gi~  194 (295)
T PF01180_consen  174 TDIEPFAI----AAELAADGADGIV  194 (295)
T ss_dssp             SCHHHHHH----HHHHHTHTECEEE
T ss_pred             CchHHHHH----HHHhhccceeEEE
Confidence            33333333    2334478999999

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=90.08  E-value=1.8  Score=37.66  Aligned_cols=74  Identities=24%  Similarity=0.311  Sum_probs=52.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhh---C--CCcEEEEEccCCCCCcccCHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRL---V--LVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~---~--~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      ++++|  .+.+++..|.+.|+|-|-+-.+   ||+.     |+...+.++++.   +  ++||.+.     | +..+.  
T Consensus       217 ivKgv--~~~~dA~~a~~~G~d~I~vsnh---gG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~-----G-GIr~G--  283 (344)
T cd02922         217 VLKGV--QTVEDAVLAAEYGVDGIVLSNH---GGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD-----G-GVRRG--  283 (344)
T ss_pred             EEEcC--CCHHHHHHHHHcCCCEEEEECC---CcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe-----C-CCCCH--
Confidence            35666  6899999999999999999753   4443     455556666552   2  3665432     2 24333  


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          80 EKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                            .||..+..+||+.+-+|
T Consensus       284 ------~Dv~kalaLGA~aV~iG  300 (344)
T cd02922         284 ------TDVLKALCLGAKAVGLG  300 (344)
T ss_pred             ------HHHHHHHHcCCCEEEEC
Confidence                  78999999999999998

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=90.04  E-value=2.1  Score=36.68  Aligned_cols=76  Identities=21%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             eeEEEe-cCHHHHHHHHHcCCCEEEecCCCCCCCC-------------------------CCCHHHHHHHHhhC-CCcEE
Q psy7930          11 TLEVCV-DSVASALAAVRGGADRLELCAALSEGGL-------------------------TPTLGLYRVIKRLV-LVPVF   63 (146)
Q Consensus        11 ~lEvcv-~s~~~a~~A~~~GAdRIELc~~l~~GGl-------------------------TPS~g~i~~~~~~~-~ipv~   63 (146)
                      ++|+.. .+.+.+...++.|+|-|.+- +  .||+                         .|+...+.++++.. ++||.
T Consensus       183 vK~~g~g~s~~~a~~l~~~Gvd~I~vs-G--~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIi  259 (326)
T cd02811         183 VKEVGFGISRETAKRLADAGVKAIDVA-G--AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLI  259 (326)
T ss_pred             EEecCCCCCHHHHHHHHHcCCCEEEEC-C--CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEE
Confidence            445433 68899999999999999984 3  2663                         23345666666666 77765


Q ss_pred             EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          64 VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        64 vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      +     -|| +...        .|+..+..+|||+|-+|-
T Consensus       260 a-----sGG-Ir~~--------~dv~kal~lGAd~V~i~~  285 (326)
T cd02811         260 A-----SGG-IRNG--------LDIAKALALGADLVGMAG  285 (326)
T ss_pred             E-----ECC-CCCH--------HHHHHHHHhCCCEEEEcH
Confidence            4     244 5533        677788889999999984

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=89.84  E-value=1.3  Score=36.40  Aligned_cols=65  Identities=22%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ++-+.+++++|||=+=+-.-      + +...++.+.+..+.|++++..|  ++.           .-+++.++++|++-
T Consensus       163 i~Ra~ay~~AGAD~v~v~~~------~-~~~~~~~~~~~~~~Pl~~~~~~--~~~-----------~~~~~~l~~lG~~~  222 (243)
T cd00377         163 IERAKAYAEAGADGIFVEGL------K-DPEEIRAFAEAPDVPLNVNMTP--GGN-----------LLTVAELAELGVRR  222 (243)
T ss_pred             HHHHHHHHHcCCCEEEeCCC------C-CHHHHHHHHhcCCCCEEEEecC--CCC-----------CCCHHHHHHCCCeE
Confidence            45567789999998866432      2 6788999989899999999888  332           23455566779999


Q ss_pred             EEEee
Q psy7930          99 FVIGA  103 (146)
Q Consensus        99 ~VfG~  103 (146)
                      +.+|.
T Consensus       223 v~~~~  227 (243)
T cd00377         223 VSYGL  227 (243)
T ss_pred             EEECh
Confidence            99985

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=89.75  E-value=3  Score=35.06  Aligned_cols=89  Identities=17%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             HHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          21 SALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      =|..-+++||.=|-....- ..||   |...++.+++.+++||   +|=    ||..++.+       |...+.+|||.|
T Consensus        66 ~A~~y~~~GA~aISVlTe~~~F~G---s~~~l~~v~~~v~~Pv---L~K----DFIid~~Q-------I~ea~~~GADav  128 (247)
T PRK13957         66 IAKTYETLGASAISVLTDQSYFGG---SLEDLKSVSSELKIPV---LRK----DFILDEIQ-------IREARAFGASAI  128 (247)
T ss_pred             HHHHHHHCCCcEEEEEcCCCcCCC---CHHHHHHHHHhcCCCE---Eec----cccCCHHH-------HHHHHHcCCCEE
Confidence            3555688899988655432 2333   7899999999999987   444    79988765       455778999999


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEe
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFH  130 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFH  130 (146)
                      .+=    -.-++.+.+++|++.|.  ||+  |-.|
T Consensus       129 LLI----~~~L~~~~l~~l~~~a~~lGle~LVEVh  159 (247)
T PRK13957        129 LLI----VRILTPSQIKSFLKHASSLGMDVLVEVH  159 (247)
T ss_pred             EeE----HhhCCHHHHHHHHHHHHHcCCceEEEEC
Confidence            432    23467779999999998  554  3445

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=89.66  E-value=1.3  Score=38.25  Aligned_cols=65  Identities=28%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             CCCEEEec-CCCCCCCCCCC------HHHHHHHHhhCC-------CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          29 GADRLELC-AALSEGGLTPT------LGLYRVIKRLVL-------VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        29 GAdRIELc-~~l~~GGlTPS------~g~i~~~~~~~~-------ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .||-|||+ |.....|+.+.      ..+++.+++..+       +||.|=+-| .     ++.+++..|   ++.+.+.
T Consensus       166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP-~-----~~~~~i~~i---a~~~~~~  236 (335)
T TIGR01036       166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAP-D-----LTESDLEDI---ADSLVEL  236 (335)
T ss_pred             hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCC-C-----CCHHHHHHH---HHHHHHh
Confidence            49999996 32222343322      345666666555       999999999 2     234444443   4556789


Q ss_pred             CCCEEEEe
Q psy7930          95 GADGFVIG  102 (146)
Q Consensus        95 GadG~VfG  102 (146)
                      |+||++.-
T Consensus       237 GadGi~l~  244 (335)
T TIGR01036       237 GIDGVIAT  244 (335)
T ss_pred             CCcEEEEE
Confidence            99999974

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=89.61  E-value=2.9  Score=35.76  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=51.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+=+..+++.|++-|.+=..-..+|.++   -...++++++.+++||..     -|+  +.|.++.+.|.      .+.|
T Consensus       151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~-----nGd--I~t~~da~~~l------~~~g  217 (312)
T PRK10550        151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIA-----NGE--IWDWQSAQQCM------AITG  217 (312)
T ss_pred             HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEE-----eCC--cCCHHHHHHHH------hccC
Confidence            3455678899999999976655666654   367899999999999743     244  55666666554      3479


Q ss_pred             CCEEEEe
Q psy7930          96 ADGFVIG  102 (146)
Q Consensus        96 adG~VfG  102 (146)
                      +|||-+|
T Consensus       218 ~DgVmiG  224 (312)
T PRK10550        218 CDAVMIG  224 (312)
T ss_pred             CCEEEEc
Confidence            9999998

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=89.59  E-value=2.7  Score=36.61  Aligned_cols=93  Identities=18%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC---CHHHHHHHHhhC----------CCcEEEEEccCCCCCcccCHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTP---TLGLYRVIKRLV----------LVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP---S~g~i~~~~~~~----------~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      ..|.|+..++.+++.|||.|=+= ..+.||-+.   |+-++.++.+.+          ++||..     -|| .. +.  
T Consensus       108 ~~v~s~~~A~~a~~~GaD~vVaq-G~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViA-----AGG-I~-dg--  177 (320)
T cd04743         108 LHVPSPGLLKQFLENGARKFIFE-GRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLF-----AGG-IH-DE--  177 (320)
T ss_pred             EEeCCHHHHHHHHHcCCCEEEEe-cCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEE-----EcC-CC-CH--
Confidence            56889999999999999998654 456777665   777777776544          577643     355 32 22  


Q ss_pred             HHHHHHHHHHHHHcCC--------CEEEEee---ecCCCC----cCHHHHHHHHHH
Q psy7930          81 KEIMALDCHQFVESGA--------DGFVIGA---LTGEQE----IDIEFIRQLKTI  121 (146)
Q Consensus        81 ~~~M~~dI~~~~~~Ga--------dG~VfG~---L~~dg~----iD~~~~~~Li~~  121 (146)
                           +.+..+..+||        +|+.+|=   ++++-.    +....=++++++
T Consensus       178 -----r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~~~~~~~~~k~~~l~a  228 (320)
T cd04743         178 -----RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVSAGAILPTFQDQAIAA  228 (320)
T ss_pred             -----HHHHHHHHcCCcccccccccEEEEccHHhcchhhcCcccccHHHHHHHHhC
Confidence                 55667778887        7999993   344443    666666667764

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=89.54  E-value=1.7  Score=41.13  Aligned_cols=79  Identities=28%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCCEEEecCC--------------C---CCCCC-----CCCHHHHHHHHhhCC--CcEEEEEccCCCCCcc
Q psy7930          20 ASALAAVRGGADRLELCAA--------------L---SEGGL-----TPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFV   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------------l---~~GGl-----TPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~   75 (146)
                      +.|..|.++|+|-|||..+              -   .-||-     --...+++.+++.++  .||.+=|+|   .+|.
T Consensus       555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~---~~~~  631 (765)
T PRK08255        555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA---HDWV  631 (765)
T ss_pred             HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc---cccc
Confidence            6678899999999999653              0   11441     112367788888764  567655555   3454


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      ....+++.+.+=++.+.+.|+|-+-+
T Consensus       632 ~~g~~~~~~~~~~~~l~~~g~d~i~v  657 (765)
T PRK08255        632 EGGNTPDDAVEIARAFKAAGADLIDV  657 (765)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEe
Confidence            44445556666677888899998877

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=89.53  E-value=6.3  Score=32.23  Aligned_cols=99  Identities=25%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             ceeEEEecCHHHHHHHHH---cCCCEEEecCCCCCC-----C--C----CC--CHHHHHHHHhhCCCcEEEEEccCCCCC
Q psy7930          10 TTLEVCVDSVASALAAVR---GGADRLELCAALSEG-----G--L----TP--TLGLYRVIKRLVLVPVFVMIRVRAGFD   73 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~---~GAdRIELc~~l~~G-----G--l----TP--S~g~i~~~~~~~~ipv~vMIRP~R~gd   73 (146)
                      +.+-++-.+++....|.+   .+++-|||+-+=...     |  -    .|  ...+++.+++ .++||.|=||+  +  
T Consensus        75 ~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~--g--  149 (233)
T cd02911          75 VGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRA--G--  149 (233)
T ss_pred             EEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcC--C--
Confidence            466777788877654442   256999998753221     2  1    23  2455666665 58999999988  3  


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHH
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLK  119 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li  119 (146)
                        ++ .+   ..+=.+.+.+.|+|++.+=.-.+.+.+|.+.++++.
T Consensus       150 --~~-~~---~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~  189 (233)
T cd02911         150 --VD-VD---DEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS  189 (233)
T ss_pred             --cC-cC---HHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc
Confidence              22 22   222346677899998766433333478888877764

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=89.50  E-value=9.4  Score=30.45  Aligned_cols=104  Identities=16%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCC------CCCCC--CHHHHHHHHh---hCCCcEEEEEccCCCCCc--ccCHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSE------GGLTP--TLGLYRVIKR---LVLVPVFVMIRVRAGFDF--VFSQAEKEIMA   85 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~------GGlTP--S~g~i~~~~~---~~~ipv~vMIRP~R~gdF--~Ys~~E~~~M~   85 (146)
                      .+.+..|.+.|+++|-+....+.      -+.++  .+..+....+   ..++++.+-+=.    -|  .|+.+++..  
T Consensus        77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~--  150 (265)
T cd03174          77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLE--  150 (265)
T ss_pred             hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHH--
Confidence            88999999999999999865331      01222  2333333332   236776666643    13  377777654  


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEee
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFHR  131 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFHR  131 (146)
                       -++.+.++|++.|.+-  +..|....+.+.++++..+    +.++-||-
T Consensus       151 -~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~  197 (265)
T cd03174         151 -VAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPDVPLGLHT  197 (265)
T ss_pred             -HHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence             4566778999988753  5567777778888877764    37788884

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=89.45  E-value=3.4  Score=35.79  Aligned_cols=85  Identities=22%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE-
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG-   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG-   98 (146)
                      +..+.+.||++|-||+  ..|.+||.  ..+++.+++..++|+-+.--- .-|        +..  .-...+.++||+- 
T Consensus       148 ~~~~~~~Ga~~i~l~D--T~G~~~P~~v~~lv~~l~~~~~v~l~~H~HN-d~G--------lA~--ANalaA~~aGa~~v  214 (365)
T TIGR02660       148 AEVAAEAGADRFRFAD--TVGILDPFSTYELVRALRQAVDLPLEMHAHN-DLG--------MAT--ANTLAAVRAGATHV  214 (365)
T ss_pred             HHHHHHcCcCEEEEcc--cCCCCCHHHHHHHHHHHHHhcCCeEEEEecC-CCC--------hHH--HHHHHHHHhCCCEE
Confidence            4567889999999999  47999994  678888888877777665444 222        222  3445556889863 


Q ss_pred             --EEEeeecCCCCcCHHHHHHHH
Q psy7930          99 --FVIGALTGEQEIDIEFIRQLK  119 (146)
Q Consensus        99 --~VfG~L~~dg~iD~~~~~~Li  119 (146)
                        =+.|.=..-|..+++.+-..+
T Consensus       215 d~tl~GiGeraGN~~lE~lv~~L  237 (365)
T TIGR02660       215 NTTVNGLGERAGNAALEEVAMAL  237 (365)
T ss_pred             EEEeeccccccccCCHHHHHHHH
Confidence              344443333444444443333

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=89.45  E-value=3.5  Score=35.41  Aligned_cols=94  Identities=21%  Similarity=0.290  Sum_probs=58.7

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..+.+....++|++-|++..+   .|-++ ....++.+++... +||.+   .     .+-|.+       +.+.+.++
T Consensus        94 ~~~~~~~~l~eagv~~I~vd~~---~G~~~~~~~~i~~ik~~~p~v~Vi~---G-----~v~t~~-------~A~~l~~a  155 (325)
T cd00381          94 DDKERAEALVEAGVDVIVIDSA---HGHSVYVIEMIKFIKKKYPNVDVIA---G-----NVVTAE-------AARDLIDA  155 (325)
T ss_pred             hHHHHHHHHHhcCCCEEEEECC---CCCcHHHHHHHHHHHHHCCCceEEE---C-----CCCCHH-------HHHHHHhc
Confidence            3457788888999999999753   23332 3567777777652 45433   2     444443       44556679


Q ss_pred             CCCEEEEee------ecC----CCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          95 GADGFVIGA------LTG----EQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        95 GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      |+|++++|.      .+.    -|.-+...+.++.++++  +.|+.
T Consensus       156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI  201 (325)
T cd00381         156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI  201 (325)
T ss_pred             CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence            999999862      222    23345666777777665  35543

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=89.21  E-value=1.6  Score=33.71  Aligned_cols=75  Identities=24%  Similarity=0.274  Sum_probs=43.2

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCC-CCCCCCC--C-CHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAA-LSEGGLT--P-TLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~-l~~GGlT--P-S~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      +...+..+...+...++|.+-+-+- ...+|-+  | ....++++++..+     +||.+-     ||        +.  
T Consensus       111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~-----GG--------I~--  175 (210)
T TIGR01163       111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD-----GG--------VN--  175 (210)
T ss_pred             ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE-----CC--------cC--
Confidence            4455667777777788999765331 1222322  2 2234445554432     565332     22        11  


Q ss_pred             HHHHHHHHHcCCCEEEEee
Q psy7930          85 ALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~  103 (146)
                      .++++.+.+.|+||+|+|-
T Consensus       176 ~env~~l~~~gad~iivgs  194 (210)
T TIGR01163       176 DDNARELAEAGADILVAGS  194 (210)
T ss_pred             HHHHHHHHHcCCCEEEECh
Confidence            1568888899999999983

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=89.21  E-value=2.3  Score=38.00  Aligned_cols=74  Identities=26%  Similarity=0.359  Sum_probs=52.9

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCC--CCC--------CCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEG--GLT--------PTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~G--GlT--------PS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.|.+++..+.++|||-|=..  +..|  .+|        |....+.++.+.   .++||.    +  .|+..|+    
T Consensus       272 ~v~t~~~a~~l~~aGad~i~vg--~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvi----a--dGGi~~~----  339 (450)
T TIGR01302       272 NVATAEQAKALIDAGADGLRVG--IGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVI----A--DGGIRYS----  339 (450)
T ss_pred             eCCCHHHHHHHHHhCCCEEEEC--CCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEE----E--eCCCCCH----
Confidence            4788999999999999998763  1122  134        556666666543   467743    3  3446666    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeee
Q psy7930          82 EIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                          .||..+.++||+.+.+|=+
T Consensus       340 ----~di~kAla~GA~~V~~G~~  358 (450)
T TIGR01302       340 ----GDIVKALAAGADAVMLGSL  358 (450)
T ss_pred             ----HHHHHHHHcCCCEEEECch
Confidence                7899999999999999955

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=89.11  E-value=3.7  Score=36.62  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=61.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+..+.......|.|-|.|-.....|+.-|+..-++++++.. +++|  .+=   ||        +.  .+++..+.++|
T Consensus       287 ~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I--~Vd---GG--------I~--~eti~~l~~aG  351 (391)
T PRK13307        287 EDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILV--AVA---GG--------VR--VENVEEALKAG  351 (391)
T ss_pred             CCHHHHHHHhhCCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcE--EEE---CC--------cC--HHHHHHHHHcC
Confidence            456566666688999999998888888788888888888752 3333  332   33        11  25588999999


Q ss_pred             CCEEEEee-ecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGA-LTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~-L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +|.||+|= ++.... =.++++++.+..+
T Consensus       352 ADivVVGsaIf~a~D-p~~aak~l~~~i~  379 (391)
T PRK13307        352 ADILVVGRAITKSKD-VRRAAEDFLNKLK  379 (391)
T ss_pred             CCEEEEeHHHhCCCC-HHHHHHHHHHhhc
Confidence            99999983 332211 2456666666554

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=89.02  E-value=1.7  Score=37.00  Aligned_cols=79  Identities=25%  Similarity=0.252  Sum_probs=47.1

Q ss_pred             HHHHHHHHHcCCCEEEecCCC---CCCCCCCC-------------------HHHHHHHHhhCCCcEEEEEccCCCCCcc-
Q psy7930          19 VASALAAVRGGADRLELCAAL---SEGGLTPT-------------------LGLYRVIKRLVLVPVFVMIRVRAGFDFV-   75 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l---~~GGlTPS-------------------~g~i~~~~~~~~ipv~vMIRP~R~gdF~-   75 (146)
                      .+.|..|.++|.|-|||..+-   -.-=|+|.                   ...++++++.++-.+.|++|- ...+|. 
T Consensus       152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vri-s~~~~~~  230 (338)
T cd04733         152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKL-NSADFQR  230 (338)
T ss_pred             HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEE-cHHHcCC
Confidence            367888999999999997431   00003332                   358888888875333345554 321111 


Q ss_pred             --cCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          76 --FSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        76 --Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                        ++.+   .+.+=++.+.++|+|-|-+
T Consensus       231 ~g~~~e---ea~~ia~~Le~~Gvd~iev  255 (338)
T cd04733         231 GGFTEE---DALEVVEALEEAGVDLVEL  255 (338)
T ss_pred             CCCCHH---HHHHHHHHHHHcCCCEEEe
Confidence              3443   4555566777889987764

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=88.93  E-value=4.2  Score=29.83  Aligned_cols=80  Identities=26%  Similarity=0.297  Sum_probs=47.5

Q ss_pred             cceeEEEecCHHHHHH--HHHcCCCEEEecCCCCCCC-CCCCH---HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH
Q psy7930           9 KTTLEVCVDSVASALA--AVRGGADRLELCAALSEGG-LTPTL---GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~--A~~~GAdRIELc~~l~~GG-lTPS~---g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      ++.+-+.+....+...  +.+.|+|-|-+......++ ..+..   ..++.+++..++||.+   -  || .. +     
T Consensus       114 ~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~---~--GG-i~-~-----  181 (200)
T cd04722         114 DVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIA---G--GG-IN-D-----  181 (200)
T ss_pred             CceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEE---E--CC-CC-C-----
Confidence            3445555554444444  4888999998876544332 22222   4455555666788754   2  44 32 1     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                        -+++..+.+.|||+|++|
T Consensus       182 --~~~~~~~~~~Gad~v~vg  199 (200)
T cd04722         182 --PEDAAEALALGADGVIVG  199 (200)
T ss_pred             --HHHHHHHHHhCCCEEEec
Confidence              256666777799999998

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=88.92  E-value=11  Score=31.81  Aligned_cols=103  Identities=12%  Similarity=0.187  Sum_probs=78.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH---HHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE---IMALDCHQ   90 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~---~M~~dI~~   90 (146)
                      +-|.+++....+.|++|+=+=       +++  .+.+++++.+..+-.|.|=|=- |.|.=.-+...-.   ...+.++.
T Consensus        84 IRs~~~v~~ll~~G~~rViiG-------t~av~~p~~v~~~~~~~g~rivv~lD~-r~g~vav~GW~e~s~~~~~~l~~~  155 (241)
T COG0106          84 IRSLEDVEALLDAGVARVIIG-------TAAVKNPDLVKELCEEYGDRIVVALDA-RDGKVAVSGWQEDSGVELEELAKR  155 (241)
T ss_pred             cCCHHHHHHHHHCCCCEEEEe-------cceecCHHHHHHHHHHcCCcEEEEEEc-cCCccccccccccccCCHHHHHHH
Confidence            468899999999999999874       333  5788898888888778888888 7653333222111   23566888


Q ss_pred             HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCe
Q psy7930          91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~v  127 (146)
                      +.+.|+.+|++=-.+.||+   +|.+.+++|.++. ..|+
T Consensus       156 ~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~ipv  194 (241)
T COG0106         156 LEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV-DIPV  194 (241)
T ss_pred             HHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh-CcCE
Confidence            9999999999999999996   7999999999887 3443

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=88.91  E-value=4.6  Score=32.24  Aligned_cols=95  Identities=19%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHh---hCCCcEEEEEccCCCCCcc--cCHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKR---LVLVPVFVMIRVRAGFDFV--FSQAEKEIMALDCHQF   91 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~---~~~ipv~vMIRP~R~gdF~--Ys~~E~~~M~~dI~~~   91 (146)
                      .++..|.+.||+-+-+--+  .|.+. ...   .++++++   ..++|+.+-..+ +|-..-  .+.++++   +-.+.+
T Consensus        80 ~~v~~a~~~Ga~~v~~~~~--~~~~~-~~~~~~~i~~v~~~~~~~g~~~iie~~~-~g~~~~~~~~~~~i~---~~~~~a  152 (235)
T cd00958          80 ASVEDAVRLGADAVGVTVY--VGSEE-EREMLEELARVAAEAHKYGLPLIAWMYP-RGPAVKNEKDPDLIA---YAARIG  152 (235)
T ss_pred             cCHHHHHHCCCCEEEEEEe--cCCch-HHHHHHHHHHHHHHHHHcCCCEEEEEec-cCCcccCccCHHHHH---HHHHHH
Confidence            4577899999998744332  33332 222   3333333   357898776666 543222  2333333   336668


Q ss_pred             HHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930          92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~v  127 (146)
                      .++|+|-+-+..     +.|.+.++++++.. +.|+
T Consensus       153 ~~~GaD~Ik~~~-----~~~~~~~~~i~~~~-~~pv  182 (235)
T cd00958         153 AELGADIVKTKY-----TGDAESFKEVVEGC-PVPV  182 (235)
T ss_pred             HHHCCCEEEecC-----CCCHHHHHHHHhcC-CCCE
Confidence            889999888752     34788899888755 4554

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=88.88  E-value=4.2  Score=31.88  Aligned_cols=91  Identities=23%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             EEecCHHHH--HHHHHcCCCEEEecCCCCC---C--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          14 VCVDSVASA--LAAVRGGADRLELCAALSE---G--GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        14 vcv~s~~~a--~~A~~~GAdRIELc~~l~~---G--GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +.+.+..+.  ..+...|||.+ |...-.-   |  |.+....+++.++  .++|+.+.     || -  |.       +
T Consensus       103 i~~~~~~~~~~~~~~~~~aD~i-l~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~Pvila-----GG-I--~~-------~  164 (203)
T cd00405         103 IRVKDEEDLEKAAAYAGEVDAI-LLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILA-----GG-L--TP-------D  164 (203)
T ss_pred             EecCChhhHHHhhhccccCCEE-EEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEE-----CC-C--Ch-------H
Confidence            344444333  35667899999 5554322   2  4555666776654  56787543     33 1  22       4


Q ss_pred             HHHHHHHcC-CCEEEEe--eecCCCCcCHHHHHHHHHHh
Q psy7930          87 DCHQFVESG-ADGFVIG--ALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        87 dI~~~~~~G-adG~VfG--~L~~dg~iD~~~~~~Li~~a  122 (146)
                      .+..+.+.| ++|+-++  +-+..|.-|.+.++++++.+
T Consensus       165 Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~~~~~~  203 (203)
T cd00405         165 NVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRAFIEAA  203 (203)
T ss_pred             HHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHHHHHhC
Confidence            566666777 9998764  34445999999999999863

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=88.84  E-value=6.2  Score=33.02  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC------HHHHHHHHhhCCCcEEEEEc-----cCCCCCcccCH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSE------GGLTPT------LGLYRVIKRLVLVPVFVMIR-----VRAGFDFVFSQ   78 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS------~g~i~~~~~~~~ipv~vMIR-----P~R~gdF~Ys~   78 (146)
                      +.+..++..|.+.|++.|-+....+.      =+.|+.      ...++.+++ .+.-+.+-|-     | -++  .++ 
T Consensus        73 ~~~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~-~G~~v~~~i~~~f~~~-~~~--~~~-  147 (274)
T cd07938          73 VPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKA-AGLRVRGYVSTAFGCP-YEG--EVP-  147 (274)
T ss_pred             CCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEeEecCC-CCC--CCC-
Confidence            36899999999999999999864432      133331      112333333 2444433222     3 222  123 


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                        .+.+.+=++.+.++|+|.|.+  -+.-|......+.++++..+    +.++-||
T Consensus       148 --~~~~~~~~~~~~~~Ga~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H  199 (274)
T cd07938         148 --PERVAEVAERLLDLGCDEISL--GDTIGVATPAQVRRLLEAVLERFPDEKLALH  199 (274)
T ss_pred             --HHHHHHHHHHHHHcCCCEEEE--CCCCCccCHHHHHHHHHHHHHHCCCCeEEEE
Confidence              445555666777899997554  46678888888888887764    3677777

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=88.78  E-value=1.9  Score=36.75  Aligned_cols=69  Identities=26%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      .-++.|.+-|||-|--.       .|=+...++.+.+.+.+||.+     +||.=.=++.|+.+|..++-..   ||.|+
T Consensus       170 ~aaRlaaelGADIiK~~-------ytg~~e~F~~vv~~~~vpVvi-----aGG~k~~~~~~~l~~~~~ai~a---Ga~G~  234 (265)
T COG1830         170 YAARLAAELGADIIKTK-------YTGDPESFRRVVAACGVPVVI-----AGGPKTETEREFLEMVTAAIEA---GAMGV  234 (265)
T ss_pred             HHHHHHHHhcCCeEeec-------CCCChHHHHHHHHhCCCCEEE-----eCCCCCCChHHHHHHHHHHHHc---cCcch
Confidence            34568889999988754       455668999999999888854     5665556899999999886544   99999


Q ss_pred             EEee
Q psy7930         100 VIGA  103 (146)
Q Consensus       100 VfG~  103 (146)
                      ++|=
T Consensus       235 ~~GR  238 (265)
T COG1830         235 AVGR  238 (265)
T ss_pred             hhhh
Confidence            9994

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=88.78  E-value=2  Score=37.86  Aligned_cols=73  Identities=22%  Similarity=0.266  Sum_probs=48.2

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCC--CC--------CCHHHHHHHHhh-------C---CCcEEEEEccCCCCCcc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGG--LT--------PTLGLYRVIKRL-------V---LVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GG--lT--------PS~g~i~~~~~~-------~---~ipv~vMIRP~R~gdF~   75 (146)
                      +.|.++++.+.+.|||-| ... ...|.  +|        |-...+..+.+.       .   ++||..      .|++.
T Consensus       195 V~t~e~A~~l~~aGAD~V-~VG-~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIA------dGGI~  266 (368)
T PRK08649        195 CVTYTTALHLMRTGAAGV-LVG-IGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIA------DGGIG  266 (368)
T ss_pred             CCCHHHHHHHHHcCCCEE-EEC-CCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEE------eCCCC
Confidence            688999999999999999 333 22221  22        333333333221       1   466532      46688


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEeee
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                      |+        .||..+..+|||++.+|-+
T Consensus       267 ~~--------~diakAlalGAd~Vm~Gs~  287 (368)
T PRK08649        267 TS--------GDIAKAIACGADAVMLGSP  287 (368)
T ss_pred             CH--------HHHHHHHHcCCCeecccch
Confidence            87        7899999999999999954

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=88.77  E-value=0.81  Score=42.56  Aligned_cols=47  Identities=23%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEcc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRV   68 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP   68 (146)
                      +-+..+.+.|||+|-||+  ..|.+||.  +.+++.+++.+++||++.---
T Consensus       153 ~~~~~~~~~Gad~I~i~D--t~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hn  201 (582)
T TIGR01108       153 DLAEELLEMGVDSICIKD--MAGILTPKAAYELVSALKKRFGLPVHLHSHA  201 (582)
T ss_pred             HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            346778899999999999  47999995  778999998888898876554

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK07094 biotin synthase; Provisional

Probab=88.77  E-value=9.7  Score=31.82  Aligned_cols=93  Identities=17%  Similarity=0.128  Sum_probs=53.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HH----HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LG----LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g----~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.+..+.+.|++++-|.     ||..|.  ..    +++.+++..++++.  +.+   |.  -+       .+.++.+++
T Consensus        77 ~~~~~~~~~g~~~i~l~-----gG~~~~~~~~~l~~l~~~i~~~~~l~i~--~~~---g~--~~-------~e~l~~Lk~  137 (323)
T PRK07094         77 ECAKKAYELGYRTIVLQ-----SGEDPYYTDEKIADIIKEIKKELDVAIT--LSL---GE--RS-------YEEYKAWKE  137 (323)
T ss_pred             HHHHHHHHCCCCEEEEe-----cCCCCCCCHHHHHHHHHHHHccCCceEE--Eec---CC--CC-------HHHHHHHHH
Confidence            34555677899999886     555554  22    44444443344443  334   21  12       356778889


Q ss_pred             cCCCEEEEeeecCC--------CCcCHHHHHHHHHHhC--CCCeEEee
Q psy7930          94 SGADGFVIGALTGE--------QEIDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        94 ~GadG~VfG~L~~d--------g~iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +|++.+-+|+=+.+        ...+.+...+.++.++  |+++..|-
T Consensus       138 aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~  185 (323)
T PRK07094        138 AGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGF  185 (323)
T ss_pred             cCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceE
Confidence            99999999875543        2345555555555554  45544443

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=88.57  E-value=3.7  Score=32.64  Aligned_cols=108  Identities=17%  Similarity=0.145  Sum_probs=63.7

Q ss_pred             EecCHHHHHHHHH----cCCCEEEecCCCCC------CCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHH
Q psy7930          15 CVDSVASALAAVR----GGADRLELCAALSE------GGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        15 cv~s~~~a~~A~~----~GAdRIELc~~l~~------GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      |--..++...+.+    .|++++.++...+.      =+.|+.  ...+..+.+.   .+..+  -+-+  ...+.|+++
T Consensus        62 ~~~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~--~~~~~~~~~  137 (237)
T PF00682_consen   62 CRANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGC--EDASRTDPE  137 (237)
T ss_dssp             EESCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEE--TTTGGSSHH
T ss_pred             eeehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCc--cccccccHH
Confidence            3344555555444    99999999975432      112211  2222222221   24444  4444  334678887


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEee
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFHR  131 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFHR  131 (146)
                      ++..+   ++.+.++|+|.|.+  -+..|....+.+.++++..+   + .++-||-
T Consensus       138 ~~~~~---~~~~~~~g~~~i~l--~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~  188 (237)
T PF00682_consen  138 ELLEL---AEALAEAGADIIYL--ADTVGIMTPEDVAELVRALREALPDIPLGFHA  188 (237)
T ss_dssp             HHHHH---HHHHHHHT-SEEEE--EETTS-S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred             HHHHH---HHHHHHcCCeEEEe--eCccCCcCHHHHHHHHHHHHHhccCCeEEEEe
Confidence            77665   56667779999754  47788888889988888775   3 7888884

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=88.38  E-value=2.3  Score=38.66  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             eEEEe---cCHHHHHHHHHcCCCEEE-------ecC-CCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccC
Q psy7930          12 LEVCV---DSVASALAAVRGGADRLE-------LCA-ALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        12 lEvcv---~s~~~a~~A~~~GAdRIE-------Lc~-~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      ++|.+   .+.+.+..+.++|||-|-       .|. ....|-..|-+..+.++.+   ..++||.      -.|+-.|+
T Consensus       269 ~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi------a~ggi~~~  342 (479)
T PRK07807        269 VPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW------ADGGVRHP  342 (479)
T ss_pred             CeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE------ecCCCCCH
Confidence            55555   677999999999999997       343 2223333477777777776   3467764      24557777


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeee
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                              .|+..+..+||+.+++|-+
T Consensus       343 --------~~~~~al~~ga~~v~~g~~  361 (479)
T PRK07807        343 --------RDVALALAAGASNVMIGSW  361 (479)
T ss_pred             --------HHHHHHHHcCCCeeeccHh
Confidence                    7889999999999999965

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=88.35  E-value=3  Score=35.87  Aligned_cols=66  Identities=23%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             cCCCEEEecC-CCCC-CC---CCC--CHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          28 GGADRLELCA-ALSE-GG---LTP--TLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        28 ~GAdRIELc~-~l~~-GG---lTP--S~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+||-|||+- .... |+   -.|  -..+++.+++.++     +||.|=|+| .     .+.+|+.   +=++.+.+.|
T Consensus       168 ~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp-~-----~~~~~~~---~ia~~l~~~G  238 (344)
T PRK05286        168 PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP-D-----LSDEELD---DIADLALEHG  238 (344)
T ss_pred             hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC-C-----CCHHHHH---HHHHHHHHhC
Confidence            3599999973 2212 21   122  2457777777776     999999998 3     3444543   4455678899


Q ss_pred             CCEEEEe
Q psy7930          96 ADGFVIG  102 (146)
Q Consensus        96 adG~VfG  102 (146)
                      +||+++-
T Consensus       239 adgi~~~  245 (344)
T PRK05286        239 IDGVIAT  245 (344)
T ss_pred             CcEEEEe
Confidence            9999985

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=88.34  E-value=3.4  Score=35.07  Aligned_cols=86  Identities=17%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEE-------EEEccCCCCCccc---CHHHHHHHHHHHHH
Q psy7930          22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVF-------VMIRVRAGFDFVF---SQAEKEIMALDCHQ   90 (146)
Q Consensus        22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~-------vMIRP~R~gdF~Y---s~~E~~~M~~dI~~   90 (146)
                      +....+ +||+=|-|=     || .--...++.+ ...+|||.       .-+|-  -|+|.-   ++++.+.+.+|.+.
T Consensus        98 a~rl~~eaGa~aVkiE-----gg-~~~~~~i~~l-~~~gIpV~gHiGltPq~a~~--~ggy~~qgrt~~~a~~~i~~A~a  168 (263)
T TIGR00222        98 AARVMQETGANAVKLE-----GG-EWLVETVQML-TERGVPVVGHLGLTPQSVNI--LGGYKVQGKDEEAAKKLLEDALA  168 (263)
T ss_pred             HHHHHHHhCCeEEEEc-----Cc-HhHHHHHHHH-HHCCCCEEEecCCCceeEee--cCCeeecCCCHHHHHHHHHHHHH
Confidence            333344 899888764     44 1122334322 23578875       22454  455654   57889999999999


Q ss_pred             HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          91 FVESGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      +.++||+++|+=++.+      +..+++.+..
T Consensus       169 ~e~AGA~~ivlE~vp~------~~a~~It~~l  194 (263)
T TIGR00222       169 LEEAGAQLLVLECVPV------ELAAKITEAL  194 (263)
T ss_pred             HHHcCCCEEEEcCCcH------HHHHHHHHhC
Confidence            9999999999977652      4555555544

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PLN02705 beta-amylase

Probab=88.29  E-value=1.7  Score=41.19  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=52.9

Q ss_pred             CCcEEEEEccCCCCCcccC---HHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRVRAGFDFVFS---QAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP~R~gdF~Ys---~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||.=-    |-+-+   =..-+.|..+++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  ++++
T Consensus       246 ~VpVyVMLPL----d~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl  321 (681)
T PLN02705        246 YVPVYVMLAV----GIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL  321 (681)
T ss_pred             ceeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence            3999999854    12211   124578899999999999999987    66664  67899999999999997  5554


Q ss_pred             EEeeccc
Q psy7930         128 TFHRAFD  134 (146)
Q Consensus       128 tFHRAFD  134 (146)
                      .-=+.|-
T Consensus       322 qvVmSFH  328 (681)
T PLN02705        322 QVVMAFH  328 (681)
T ss_pred             EEEEEee
Confidence            4334444

>PLN02334 ribulose-phosphate 3-epimerase

Probab=88.22  E-value=4.5  Score=32.51  Aligned_cols=93  Identities=20%  Similarity=0.262  Sum_probs=50.7

Q ss_pred             ceeEEEec--CHHHHHHHH-HcC-CCEEEecC-CCCCCCC-CC--CHHHHHHHHhh-CCCcEEEE--EccCCCCCcccCH
Q psy7930          10 TTLEVCVD--SVASALAAV-RGG-ADRLELCA-ALSEGGL-TP--TLGLYRVIKRL-VLVPVFVM--IRVRAGFDFVFSQ   78 (146)
Q Consensus        10 ~~lEvcv~--s~~~a~~A~-~~G-AdRIELc~-~l~~GGl-TP--S~g~i~~~~~~-~~ipv~vM--IRP~R~gdF~Ys~   78 (146)
                      .++-+.+.  +..+...+. +.| +|.|=+-. .-..+|- .|  ....++++++. .++||.+-  |++          
T Consensus       116 ~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI~~----------  185 (229)
T PLN02334        116 MKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVDGGVGP----------  185 (229)
T ss_pred             CeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEEeCCCCH----------
Confidence            34455553  444444444 443 99985532 1122232 22  23456666665 35676653  344          


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcC-HHHHHHHHHH
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGA-LTGEQEID-IEFIRQLKTI  121 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD-~~~~~~Li~~  121 (146)
                             +.+..+.+.|+||||+|- +...-  | .++++++.+.
T Consensus       186 -------e~i~~l~~aGad~vvvgsai~~~~--d~~~~~~~l~~~  221 (229)
T PLN02334        186 -------STIDKAAEAGANVIVAGSAVFGAP--DYAEVISGLRAS  221 (229)
T ss_pred             -------HHHHHHHHcCCCEEEEChHHhCCC--CHHHHHHHHHHH
Confidence                   488999999999999983 33221  3 3445555543

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=88.21  E-value=6.6  Score=33.48  Aligned_cols=103  Identities=18%  Similarity=0.260  Sum_probs=71.7

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCC--Cc-----ccCHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGF--DF-----VFSQAEKEIM   84 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~g--dF-----~Ys~~E~~~M   84 (146)
                      +++.+..|.++|.+-|=+=..     --|.-..++.+++.      .++|+-.-|-- -+|  |.     +|++-     
T Consensus        88 ~~~~i~~ai~~GftSVm~d~S-----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~-i~g~ed~~~g~s~~t~p-----  156 (293)
T PRK07315         88 HYEDALECIEVGYTSIMFDGS-----HLPVEENLKLAKEVVEKAHAKGISVEAEVGT-IGGEEDGIIGKGELAPI-----  156 (293)
T ss_pred             CHHHHHHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCc-ccCcCccccCccCCCCH-----
Confidence            688999999999988887642     34666666666653      37888777765 443  21     23322     


Q ss_pred             HHHHHHHHHcCCCEEEEe--ee-----cCCCCcCHHHHHHHHHHhCCCCeEEeec
Q psy7930          85 ALDCHQFVESGADGFVIG--AL-----TGEQEIDIEFIRQLKTIIGDRPITFHRA  132 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG--~L-----~~dg~iD~~~~~~Li~~a~~~~vtFHRA  132 (146)
                       ++...+.+.|+|-+.+|  -.     ++.-.||.+.++++.+...+.|+++|=.
T Consensus       157 -eea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGG  210 (293)
T PRK07315        157 -EDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGG  210 (293)
T ss_pred             -HHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECC
Confidence             22344557899988888  33     3223699999999999987799999965

>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics

Probab=88.13  E-value=1.8  Score=37.65  Aligned_cols=59  Identities=15%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC-CCcCHHHHHHHHHHhC--CCCeEEeeccc
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGALTGE-QEIDIEFIRQLKTIIG--DRPITFHRAFD  134 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d-g~iD~~~~~~Li~~a~--~~~vtFHRAFD  134 (146)
                      .++.|++.|.+-++.+.+.||.||-+|..-.. -..|.+.+.++.+.|+  +.++.+|=-.+
T Consensus       161 ~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~  222 (415)
T cd01297         161 ATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYE  222 (415)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcc
Confidence            46789999999999999999999998853222 2578999999998887  67788886544

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=88.11  E-value=9.2  Score=34.85  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +..|.++|.|.+-++..++.  +--....++.+++ .+..+.+-|-= -.+ -.|+.+-   ..+-++.+.++|+|.|.+
T Consensus       101 v~~A~~~Gvd~irif~~lnd--~~n~~~~i~~ak~-~G~~v~~~i~~-t~~-p~~t~e~---~~~~a~~l~~~Gad~I~i  172 (467)
T PRK14041        101 VKKVAEYGLDIIRIFDALND--IRNLEKSIEVAKK-HGAHVQGAISY-TVS-PVHTLEY---YLEFARELVDMGVDSICI  172 (467)
T ss_pred             HHHHHHCCcCEEEEEEeCCH--HHHHHHHHHHHHH-CCCEEEEEEEe-ccC-CCCCHHH---HHHHHHHHHHcCCCEEEE
Confidence            67889999999999976654  1001112222222 34555544432 111 1445444   444455677889997665


Q ss_pred             eeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930         102 GALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus       102 G~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      .  +.-|......+.+|+.+.+   ++++-||-
T Consensus       173 ~--Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~  203 (467)
T PRK14041        173 K--DMAGLLTPKRAYELVKALKKKFGVPVEVHS  203 (467)
T ss_pred             C--CccCCcCHHHHHHHHHHHHHhcCCceEEEe
Confidence            3  6678888889999988875   57788884

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=88.09  E-value=13  Score=30.20  Aligned_cols=109  Identities=12%  Similarity=-0.010  Sum_probs=63.0

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhC----CCcEEEEEccCCCCCcccC-----HHHHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFS-----QAEKEIMALDCH   89 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys-----~~E~~~M~~dI~   89 (146)
                      ....|.+.|.+-|||--.-..+-..|  |...++++++.+    ++.+. +..| -..+|.-.     ..-++.+++-|+
T Consensus        15 ~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~i~   92 (279)
T cd00019          15 ALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLS-VHAP-YLINLASPDKEKREKSIERLKDEIE   92 (279)
T ss_pred             HHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEE-EEcC-ceeccCCCCHHHHHHHHHHHHHHHH
Confidence            44568899999999853211111111  345555555433    33433 3345 33444322     335778899999


Q ss_pred             HHHHcCCCEEEEeeecCCC-C------cCHHHHHHHHHHhC--CCCeEEee
Q psy7930          90 QFVESGADGFVIGALTGEQ-E------IDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg-~------iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      .++++|++-+|+-.-...+ .      .=.+.+++|.+.|+  ++.+.++-
T Consensus        93 ~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn  143 (279)
T cd00019          93 RCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALET  143 (279)
T ss_pred             HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence            9999999998883222211 1      11356777788765  55666554

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=88.06  E-value=2.1  Score=34.99  Aligned_cols=85  Identities=25%  Similarity=0.237  Sum_probs=57.0

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      |++|+.+||.-|-.+          +..-++++++.+++||.=+|.-..+++=+|    +.--.+|++.+.+.|+|=+-+
T Consensus         5 A~Aa~~gGA~giR~~----------~~~dI~aik~~v~lPIIGi~K~~y~~~~V~----ITPT~~ev~~l~~aGadIIAl   70 (192)
T PF04131_consen    5 AKAAEEGGAVGIRAN----------GVEDIRAIKKAVDLPIIGIIKRDYPDSDVY----ITPTLKEVDALAEAGADIIAL   70 (192)
T ss_dssp             HHHHHHCT-SEEEEE----------SHHHHHHHHTTB-S-EEEE-B-SBTTSS------BS-SHHHHHHHHHCT-SEEEE
T ss_pred             HHHHHHCCceEEEcC----------CHHHHHHHHHhcCCCEEEEEeccCCCCCeE----ECCCHHHHHHHHHcCCCEEEE
Confidence            788999999988877          578999999999999999995313343344    233457888999999999988


Q ss_pred             eeecCCCCcCHHHHHHHHHHhC
Q psy7930         102 GALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       102 G~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      =+=+....   +.+.+|+...+
T Consensus        71 DaT~R~Rp---~~l~~li~~i~   89 (192)
T PF04131_consen   71 DATDRPRP---ETLEELIREIK   89 (192)
T ss_dssp             E-SSSS-S---S-HHHHHHHHH
T ss_pred             ecCCCCCC---cCHHHHHHHHH
Confidence            87555544   77788888776

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=88.06  E-value=1.9  Score=36.10  Aligned_cols=83  Identities=18%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEec-CCCCCCCCC---CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELC-AALSEGGLT---PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc-~~l~~GGlT---PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      .++=.=|.|+++++.|.+.|+|-|=-- +.+..-+-+   |-+.+++++.+ .+.+|  |-    .|.|...        
T Consensus       128 ~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~v--IA----EGr~~tP--------  192 (229)
T COG3010         128 QLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRV--IA----EGRYNTP--------  192 (229)
T ss_pred             cEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeE--Ee----eCCCCCH--------
Confidence            445556789999999999999998644 333332334   45777777766 55555  32    4555544        


Q ss_pred             HHHHHHHHcCCCEEEEe-eecCC
Q psy7930          86 LDCHQFVESGADGFVIG-ALTGE  107 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG-~L~~d  107 (146)
                      +..+.+.++||+++|+| ++|.=
T Consensus       193 ~~Ak~a~~~Ga~aVvVGsAITRp  215 (229)
T COG3010         193 EQAKKAIEIGADAVVVGSAITRP  215 (229)
T ss_pred             HHHHHHHHhCCeEEEECcccCCH
Confidence            34567788999999997 55543

>PLN02334 ribulose-phosphate 3-epimerase

Probab=87.93  E-value=4.1  Score=32.76  Aligned_cols=46  Identities=22%  Similarity=0.459  Sum_probs=34.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhCCCc--EEEEEc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLVLVP--VFVMIR   67 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~~ip--v~vMIR   67 (146)
                      +.+..+.++|++.|-|  ...-|-..|..    .+++.+++..+.|  ++.||.
T Consensus        24 ~~l~~~~~~g~~~ihl--d~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~   75 (229)
T PLN02334         24 EEAKRVLDAGADWLHV--DVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT   75 (229)
T ss_pred             HHHHHHHHcCCCEEEE--ecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC
Confidence            4678889999999999  34456566654    4788888877655  788884

>PRK09061 D-glutamate deacylase; Validated

Probab=87.87  E-value=1.8  Score=39.18  Aligned_cols=58  Identities=19%  Similarity=0.086  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeecccC
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRAFDV  135 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~  135 (146)
                      |.+|++.|.+-++.+.+.||.||-.| +.....++.+.+.++.+.|+  +.++++|---..
T Consensus       164 t~~el~~m~~ll~~al~~Ga~gis~~-~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~  223 (509)
T PRK09061        164 TPAELAEILELLEQGLDEGALGIGIG-AGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS  223 (509)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEecC-CccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            47899999999999999999999876 33333579999999999887  688888875543

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=87.86  E-value=5.1  Score=34.05  Aligned_cols=77  Identities=30%  Similarity=0.331  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC-----CCC-----------C--------HHHHHHHHhhC--CCcEEEEEccCCCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG-----LTP-----------T--------LGLYRVIKRLV--LVPVFVMIRVRAGFD   73 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG-----lTP-----------S--------~g~i~~~~~~~--~ipv~vMIRP~R~gd   73 (146)
                      +.|..|.++|.|-|||..+  .|.     |+|           |        ...++.+++.+  ++||.+=|+|   .+
T Consensus       158 ~aA~~a~~aGfDgVei~~~--~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~---~~  232 (336)
T cd02932         158 AAARRAVEAGFDVIEIHAA--HGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISA---TD  232 (336)
T ss_pred             HHHHHHHHcCCCEEEEccc--cccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcc---cc
Confidence            6778899999999999742  111     122           1        57888888888  4565444444   22


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      |.-...+.+.+.+=++.+.+.|+|-|-+
T Consensus       233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev  260 (336)
T cd02932         233 WVEGGWDLEDSVELAKALKELGVDLIDV  260 (336)
T ss_pred             cCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            2222222444555566677889987765

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd02812 PcrB_like PcrB_like proteins

Probab=87.80  E-value=3.9  Score=33.68  Aligned_cols=77  Identities=27%  Similarity=0.308  Sum_probs=50.9

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      -|++|+.-|-+=+=|    +-.|..+...+++++++.+ ++|+.+      ||+-. |.       ++++.+.++|||+|
T Consensus       140 yA~aae~~g~~ivyL----e~SG~~~~~e~I~~v~~~~~~~pl~v------GGGIr-s~-------e~a~~l~~aGAD~V  201 (219)
T cd02812         140 YALAAEYLGMPIVYL----EYSGAYGPPEVVRAVKKVLGDTPLIV------GGGIR-SG-------EQAKEMAEAGADTI  201 (219)
T ss_pred             HHHHHHHcCCeEEEe----CCCCCcCCHHHHHHHHHhcCCCCEEE------eCCCC-CH-------HHHHHHHHcCCCEE
Confidence            356677888332222    2346668999999999998 889865      33322 32       45677888999999


Q ss_pred             EEeeecCCCCcCHHHHHHH
Q psy7930         100 VIGALTGEQEIDIEFIRQL  118 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~L  118 (146)
                      |+|=.-.+   |.+.++++
T Consensus       202 VVGsai~~---~p~~~~~~  217 (219)
T cd02812         202 VVGNIVEE---DPNAALET  217 (219)
T ss_pred             EECchhhC---CHHHHHHH
Confidence            99965443   24554444

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=87.74  E-value=3.2  Score=34.48  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=39.8

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+....+....-|-+.+.....|.+     +....++.+++..+.||.|        +|-.+.      .++++.+.++|
T Consensus       155 ri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v--------gfGI~~------~e~~~~~~~~G  220 (256)
T TIGR00262       155 RLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLV--------GFGISK------PEQVKQAIDAG  220 (256)
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE--------eCCCCC------HHHHHHHHHcC
Confidence            3333333333356555544445543     2356777777776777533        233331      14677789999


Q ss_pred             CCEEEEe
Q psy7930          96 ADGFVIG  102 (146)
Q Consensus        96 adG~VfG  102 (146)
                      |||+|+|
T Consensus       221 ADgvVvG  227 (256)
T TIGR00262       221 ADGVIVG  227 (256)
T ss_pred             CCEEEEC
Confidence            9999999

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=87.71  E-value=15  Score=30.59  Aligned_cols=104  Identities=16%  Similarity=0.089  Sum_probs=64.0

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +.++...+.+.|.+.|-++..+..  +.-....++.+++ .+..+.+-|--  ..+..|+++.+..+   ++.+.++|+|
T Consensus        93 ~~~di~~~~~~g~~~iri~~~~~~--~~~~~~~i~~ak~-~G~~v~~~i~~--~~~~~~~~~~~~~~---~~~~~~~Ga~  164 (275)
T cd07937          93 VELFVEKAAKNGIDIFRIFDALND--VRNLEVAIKAVKK-AGKHVEGAICY--TGSPVHTLEYYVKL---AKELEDMGAD  164 (275)
T ss_pred             HHHHHHHHHHcCCCEEEEeecCCh--HHHHHHHHHHHHH-CCCeEEEEEEe--cCCCCCCHHHHHHH---HHHHHHcCCC
Confidence            456778899999999999865443  1111222333322 24444332321  11234566655544   5556788999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      .|-+.  +.-|....+.+.+++...+   +.++-||-
T Consensus       165 ~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~  199 (275)
T cd07937         165 SICIK--DMAGLLTPYAAYELVKALKKEVGLPIHLHT  199 (275)
T ss_pred             EEEEc--CCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence            87654  7788899999999888875   46677773

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=87.54  E-value=1.4  Score=36.53  Aligned_cols=62  Identities=18%  Similarity=0.377  Sum_probs=41.5

Q ss_pred             CCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec-CCCCcCHHHHHHHHH
Q psy7930          43 GLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALT-GEQEIDIEFIRQLKT  120 (146)
Q Consensus        43 GlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~-~dg~iD~~~~~~Li~  120 (146)
                      |-.|+..+++.+++.+++ |+.+      ||+-. |.       ++++.+.+.||||+|+|=.- +|..   +.++++.+
T Consensus       167 g~~~~~e~I~~v~~~~~~~pviv------GGGIr-s~-------e~a~~~l~~GAD~VVVGSai~~d~~---~~~~~~~~  229 (232)
T PRK04169        167 GDPVPPEMVKAVKKALDITPLIY------GGGIR-SP-------EQARELMAAGADTIVVGNIIEEDPK---KTVKAIKK  229 (232)
T ss_pred             CCCCCHHHHHHHHHhcCCCcEEE------ECCCC-CH-------HHHHHHHHhCCCEEEEChHHhhCHH---HHHHHHHh
Confidence            455669999999999888 8764      34333 22       45677778999999999543 3332   45555544


Q ss_pred             H
Q psy7930         121 I  121 (146)
Q Consensus       121 ~  121 (146)
                      .
T Consensus       230 ~  230 (232)
T PRK04169        230 A  230 (232)
T ss_pred             h
Confidence            3

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4

Probab=87.53  E-value=8.2  Score=30.65  Aligned_cols=96  Identities=26%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHH---------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLG---------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+=+-..|..-+..|...|+|-|=|--   +.|..|+-.         ++..+...-..+..++||. .+.+-       
T Consensus         3 ~l~vp~~~~~~~~~a~~~g~D~vilDl---Ed~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRv-n~~~~-------   71 (221)
T PF03328_consen    3 GLFVPANSPKMLEKAAASGADFVILDL---EDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRV-NSLDS-------   71 (221)
T ss_dssp             EEEEESTSHHHHHHHHTTCSSEEEEES---STTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE--SSTTC-------
T ss_pred             EEEEeCCCHHHHHHHHhcCCCEEEEeC---cccCCcccchhhHHHHHHHHHhhcccccccccceecC-CCCCc-------
Confidence            344667889999999999999999853   456655532         2222222234667889998 55432       


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ..+++|++ +.+.|++||++=-.+.     .+..+++++.++
T Consensus        72 ~~~~~Dl~-~l~~g~~gI~lP~ves-----~~~~~~~~~~~~  107 (221)
T PF03328_consen   72 PHIERDLE-ALDAGADGIVLPKVES-----AEDARQAVAALR  107 (221)
T ss_dssp             HHHHHHHH-HHHTTSSEEEETT--S-----HHHHHHHHHHHS
T ss_pred             chhhhhhh-hcccCCCeeeccccCc-----HHHHHHHHHHHh
Confidence            23667888 9999999998865432     456666666665

1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=87.53  E-value=4.4  Score=35.19  Aligned_cols=76  Identities=24%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             eeEE-EecCHHHHHHHHHcCCCEEEecCCCCCCCC-----------------------CCCHHHHHHHHhh-CCCcEEEE
Q psy7930          11 TLEV-CVDSVASALAAVRGGADRLELCAALSEGGL-----------------------TPTLGLYRVIKRL-VLVPVFVM   65 (146)
Q Consensus        11 ~lEv-cv~s~~~a~~A~~~GAdRIELc~~l~~GGl-----------------------TPS~g~i~~~~~~-~~ipv~vM   65 (146)
                      ++|+ +..+.+.|..+++.|+|-|.+ ++  .||+                       .|+...+.++++. .++||.+ 
T Consensus       191 vK~~g~g~s~~~a~~l~~~Gvd~I~V-sg--~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia-  266 (352)
T PRK05437        191 VKEVGFGISKETAKRLADAGVKAIDV-AG--AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIA-  266 (352)
T ss_pred             EEeCCCCCcHHHHHHHHHcCCCEEEE-CC--CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEE-
Confidence            3444 346799999999999999999 43  2553                       2445566666666 4777654 


Q ss_pred             EccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          66 IRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        66 IRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                          -|| +...        .|+..+..+|||+|-+|-
T Consensus       267 ----~GG-I~~~--------~dv~k~l~~GAd~v~ig~  291 (352)
T PRK05437        267 ----SGG-IRNG--------LDIAKALALGADAVGMAG  291 (352)
T ss_pred             ----ECC-CCCH--------HHHHHHHHcCCCEEEEhH
Confidence                244 3322        678888889999999884

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=87.52  E-value=6.5  Score=32.15  Aligned_cols=100  Identities=12%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             cCH-HHHHHHHH-cCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          17 DSV-ASALAAVR-GGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        17 ~s~-~~a~~A~~-~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      .|+ +-|..-.+ .||+++-+.+ +=...|-.+...+++++.+.+++||.+      ||+.. |       .+|++.+.+
T Consensus        31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~v------GGGIr-s-------~e~v~~~l~   96 (234)
T PRK13587         31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV------GGGIR-T-------KSQIMDYFA   96 (234)
T ss_pred             CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEE------cCCcC-C-------HHHHHHHHH
Confidence            455 55555666 6999999997 223467778899999999988999765      44333 2       256778888


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV  136 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~  136 (146)
                      +|++-+|+|-.+-.   |.+.++++.+.-++ ++++  ++|.-
T Consensus        97 ~Ga~kvvigt~a~~---~~~~l~~~~~~fg~-~ivv--slD~~  133 (234)
T PRK13587         97 AGINYCIVGTKGIQ---DTDWLKEMAHTFPG-RIYL--SVDAY  133 (234)
T ss_pred             CCCCEEEECchHhc---CHHHHHHHHHHcCC-CEEE--EEEee
Confidence            99999999965532   67788888776643 3443  36653

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=87.49  E-value=1.1  Score=41.93  Aligned_cols=66  Identities=26%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+..+.+.|||+|=||+  ..|.+||.  ..+++.+++.+++||++.--- ..|        +..  .-...+.++|||
T Consensus       159 ~~a~~l~~~Gad~i~i~D--t~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hn-t~G--------lA~--An~laAieAGa~  225 (593)
T PRK14040        159 DLAKQLEDMGVDSLCIKD--MAGLLKPYAAYELVSRIKKRVDVPLHLHCHA-TTG--------LST--ATLLKAIEAGID  225 (593)
T ss_pred             HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHHhcCCeEEEEECC-CCc--------hHH--HHHHHHHHcCCC
Confidence            446778899999999999  47999995  779999999889998876554 333        222  233445677876


Q ss_pred             E
Q psy7930          98 G   98 (146)
Q Consensus        98 G   98 (146)
                      -
T Consensus       226 ~  226 (593)
T PRK14040        226 G  226 (593)
T ss_pred             E
Confidence            3

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=87.46  E-value=8.2  Score=32.99  Aligned_cols=100  Identities=21%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             EEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh------hCCCcEEEEEccCCCCCc----ccCHHHHH
Q psy7930          13 EVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR------LVLVPVFVMIRVRAGFDF----VFSQAEKE   82 (146)
Q Consensus        13 Evcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~------~~~ipv~vMIRP~R~gdF----~Ys~~E~~   82 (146)
                      ++-+.++++   |.+.|||=+---  ...| --++...++.+.+      ..++|+..|+-| |+-+|    .++.+.+.
T Consensus        97 ~~~~~~ve~---ai~lgadAV~~~--Vy~G-se~e~~~i~~~~~v~~~a~~~Gmp~v~~~Yp-Rg~~~~~~~~~d~~~v~  169 (265)
T COG1830          97 QVLVATVED---AIRLGADAVGAT--VYVG-SETEREMIENISQVVEDAHELGMPLVAWAYP-RGPAIKDEYHRDADLVG  169 (265)
T ss_pred             ceeeeeHHH---HHhCCCcEEEEE--EecC-CcchHHHHHHHHHHHHHHHHcCCceEEEEec-cCCcccccccccHHHHH
Confidence            344444555   568899876433  3334 3445555555543      348999999999 99988    55555444


Q ss_pred             HHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          83 IMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                         .-.+...++|||=+     +-+-.=|.+..+++++.|. .||.
T Consensus       170 ---~aaRlaaelGADIi-----K~~ytg~~e~F~~vv~~~~-vpVv  206 (265)
T COG1830         170 ---YAARLAAELGADII-----KTKYTGDPESFRRVVAACG-VPVV  206 (265)
T ss_pred             ---HHHHHHHHhcCCeE-----eecCCCChHHHHHHHHhCC-CCEE
Confidence               34567889999944     4444445577777777777 6654

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=87.42  E-value=7.3  Score=35.45  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCC----CCCCC-CHHHHHHHHhhC---------CCcEEEEEccCCCCCc
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSE----GGLTP-TLGLYRVIKRLV---------LVPVFVMIRVRAGFDF   74 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~----GGlTP-S~g~i~~~~~~~---------~ipv~vMIRP~R~gdF   74 (146)
                      ..++=+-+-|++++..|.+.|||-|=+-.=...    .+..| ....++.+++..         ++||+.+     ||  
T Consensus       300 ~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI-----GG--  372 (437)
T PRK12290        300 GIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI-----GG--  372 (437)
T ss_pred             CCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE-----CC--
Confidence            357888999999999999999999988653322    23333 455666655543         6899886     33  


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEE-EEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGF-VIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~-VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                              +-.+++..+++.|++|| |+++++.... =.++.++|.+.-..-+.+
T Consensus       373 --------I~~~Ni~~vl~aGa~GVAVVSAI~~A~D-P~aa~~~l~~~~~~~~~~  418 (437)
T PRK12290        373 --------IDQSNAEQVWQCGVSSLAVVRAITLAED-PQLVIEFFDQVMAENQLL  418 (437)
T ss_pred             --------cCHHHHHHHHHcCCCEEEEehHhhcCCC-HHHHHHHHHHHHhhcCCC
Confidence                    12278899999999998 5677765432 234556666665544443

>PRK08227 autoinducer 2 aldolase; Validated

Probab=87.35  E-value=4.6  Score=34.17  Aligned_cols=97  Identities=20%  Similarity=0.117  Sum_probs=56.4

Q ss_pred             EEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHH---H---hhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          13 EVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVI---K---RLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        13 Evcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~---~---~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..-+.|++   .|.+.|||=+=.--  ..|+- .....++.+   .   +..++|+.+ +-| ||.+.. +  +.+....
T Consensus        94 ~~l~~sVe---eAvrlGAdAV~~~v--~~Gs~-~E~~~l~~l~~v~~ea~~~G~Plla-~~p-rG~~~~-~--~~~~ia~  162 (264)
T PRK08227         94 EAVAVDME---DAVRLNACAVAAQV--FIGSE-YEHQSIKNIIQLVDAGLRYGMPVMA-VTA-VGKDMV-R--DARYFSL  162 (264)
T ss_pred             ccceecHH---HHHHCCCCEEEEEE--ecCCH-HHHHHHHHHHHHHHHHHHhCCcEEE-Eec-CCCCcC-c--hHHHHHH
Confidence            34444444   47899999665443  34522 112233222   2   234899988 459 988653 3  4447888


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      -.+...++|||=+=.-. +  +    +.++++++++ +.||.
T Consensus       163 aaRiaaELGADiVK~~y-~--~----~~f~~vv~a~-~vPVv  196 (264)
T PRK08227        163 ATRIAAEMGAQIIKTYY-V--E----EGFERITAGC-PVPIV  196 (264)
T ss_pred             HHHHHHHHcCCEEecCC-C--H----HHHHHHHHcC-CCcEE
Confidence            89999999999554332 1  1    4556666633 34443

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=87.33  E-value=3.7  Score=34.19  Aligned_cols=69  Identities=30%  Similarity=0.453  Sum_probs=47.1

Q ss_pred             HHHHHHHHcCCCEEEecCC-------C---------CCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          20 ASALAAVRGGADRLELCAA-------L---------SEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~-------l---------~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      +-+..+++.|+|=|.+...       +         ..||+++      +...++++++.+++||...     ||  +.|
T Consensus       173 ~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~-----GG--I~~  245 (301)
T PRK07259        173 EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGM-----GG--ISS  245 (301)
T ss_pred             HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEE-----CC--CCC
Confidence            3467788999999987421       1         2366665      4678899988889997652     44  334


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .++       +..+...|||.|.+|
T Consensus       246 ~~d-------a~~~l~aGAd~V~ig  263 (301)
T PRK07259        246 AED-------AIEFIMAGASAVQVG  263 (301)
T ss_pred             HHH-------HHHHHHcCCCceeEc
Confidence            444       444456899999887

>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases

Probab=87.33  E-value=2.4  Score=36.59  Aligned_cols=48  Identities=21%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             hhCCCcEEEEEccCCCCCcccC-HHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930          56 RLVLVPVFVMIRVRAGFDFVFS-QAEKEIMALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        56 ~~~~ipv~vMIRP~R~gdF~Ys-~~E~~~M~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      +..+|-....|.|  |.+|+|| +++++.++.=+..+.++|++.|.  +|-+|
T Consensus        66 ~~~~V~Fv~aisP--g~~~~~s~~~d~~~L~~K~~ql~~lGvr~Fa--ilfDD  114 (306)
T PF07555_consen   66 KANGVDFVYAISP--GLDICYSSEEDFEALKAKFDQLYDLGVRSFA--ILFDD  114 (306)
T ss_dssp             HHTT-EEEEEEBG--TTT--TSHHHHHHHHHHHHHHHHCTT--EEE--EE-TS
T ss_pred             HHcCCEEEEEECc--ccccccCcHHHHHHHHHHHHHHHhcCCCEEE--EeecC
Confidence            3458999999999  9999998 88999999999999999999764  45555

Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....

>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3

Probab=87.30  E-value=1.7  Score=38.46  Aligned_cols=60  Identities=13%  Similarity=0.196  Sum_probs=45.0

Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCC
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVR  137 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~  137 (146)
                      +.|+.+   ..+.||+.+++.|.|||++=+...|. --.+++..+.++|..+.+-+-=-||...
T Consensus        12 ~~yt~~---dw~~di~~A~~~GIDgFaLNig~~d~-~~~~~l~~a~~AA~~~gFKlf~SfD~~~   71 (386)
T PF03659_consen   12 YNYTQE---DWEADIRLAQAAGIDGFALNIGSSDS-WQPDQLADAYQAAEAVGFKLFFSFDMNS   71 (386)
T ss_pred             CCCCHH---HHHHHHHHHHHcCCCEEEEecccCCc-ccHHHHHHHHHHHHhcCCEEEEEecccC
Confidence            445544   45689999999999999999986664 4468889999999866644444677753

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=87.24  E-value=4.9  Score=34.06  Aligned_cols=97  Identities=25%  Similarity=0.293  Sum_probs=53.7

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHH--------HH
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIM--------AL   86 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M--------~~   86 (146)
                      +..+.+.|++++-|.     ||..|.      ..+++.+++.. ++.++.           +|..|+..+        .+
T Consensus        81 ~~~~~~~G~~~i~l~-----gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-----------~s~~ei~~~~~~~g~~~~e  144 (340)
T TIGR03699        81 IEELVAYGGTQILLQ-----GGVNPDLGLDYYEDLFRAIKARFPHIHIHS-----------FSPVEIVYIAKKEGLSLRE  144 (340)
T ss_pred             HHHHHHcCCcEEEEe-----cCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-----------CCHHHHHHHhccCCCCHHH
Confidence            444567899999885     666664      23566665543 333322           345555433        57


Q ss_pred             HHHHHHHcCCCEEEE-ee--ecCC-------CCcCHHHHHHHHHHhC--CCCeEEeeccc
Q psy7930          87 DCHQFVESGADGFVI-GA--LTGE-------QEIDIEFIRQLKTIIG--DRPITFHRAFD  134 (146)
Q Consensus        87 dI~~~~~~GadG~Vf-G~--L~~d-------g~iD~~~~~~Li~~a~--~~~vtFHRAFD  134 (146)
                      .++.++++|++.+-. |+  ++++       +..+.+..-+.++.++  |++++.|.-|=
T Consensus       145 ~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiG  204 (340)
T TIGR03699       145 VLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFG  204 (340)
T ss_pred             HHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEee
Confidence            788889999886642 21  1110       1234444445555554  56666665544

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=87.18  E-value=4.1  Score=34.37  Aligned_cols=70  Identities=27%  Similarity=0.395  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+..+++.|+|-|.+-.....+|..  +....++++++.+++||..     -||=+  |.++++.+.      +..|+|
T Consensus       151 ~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~-----nGgI~--~~~da~~~l------~~~gad  217 (319)
T TIGR00737       151 EAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIG-----NGDIF--SPEDAKAML------ETTGCD  217 (319)
T ss_pred             HHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEE-----eCCCC--CHHHHHHHH------HhhCCC
Confidence            44567888999999886544445543  3577888888888888754     35522  333333332      246999


Q ss_pred             EEEEe
Q psy7930          98 GFVIG  102 (146)
Q Consensus        98 G~VfG  102 (146)
                      ||.+|
T Consensus       218 ~Vmig  222 (319)
T TIGR00737       218 GVMIG  222 (319)
T ss_pred             EEEEC
Confidence            99998

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PLN02905 beta-amylase

Probab=87.13  E-value=2.4  Score=40.37  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=52.9

Q ss_pred             CCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||.=-   ...+.    -..-+.|...++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  ++++
T Consensus       264 ~VpVyVMLPLd~V~~~~~----l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl  339 (702)
T PLN02905        264 YVPVYVMLPLGVINMKCE----LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL  339 (702)
T ss_pred             ceeEEEEeecceecCCCc----ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence            4999999854   01222    124567899999999999999987    66653  57899999999999997  5654


Q ss_pred             EEeecccC
Q psy7930         128 TFHRAFDV  135 (146)
Q Consensus       128 tFHRAFD~  135 (146)
                      --=+.|-+
T Consensus       340 qvVMSFHq  347 (702)
T PLN02905        340 QVVMSFHE  347 (702)
T ss_pred             EEEEEecc
Confidence            43344443

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=87.12  E-value=10  Score=32.22  Aligned_cols=114  Identities=20%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             cceeEEEecCHHHHHHHHH----cCCCEEEecCCC--------CCC-CCCCCH----HHHHHHHhhCCCcEEEEEccCCC
Q psy7930           9 KTTLEVCVDSVASALAAVR----GGADRLELCAAL--------SEG-GLTPTL----GLYRVIKRLVLVPVFVMIRVRAG   71 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~----~GAdRIELc~~l--------~~G-GlTPS~----g~i~~~~~~~~ipv~vMIRP~R~   71 (146)
                      .+.+.++..+++.+..|.+    .|++-|.|+-+=        ..| +|--..    .+++.+++.+++||.|=||-  |
T Consensus        55 p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~--g  132 (309)
T PF01207_consen   55 PLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRL--G  132 (309)
T ss_dssp             TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEES--E
T ss_pred             ceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccc--c
Confidence            4789999999988887754    489999998631        111 233333    35666667789999999998  2


Q ss_pred             CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC----CCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930          72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTG----EQEIDIEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~vtFH  130 (146)
                      -+  .+.   +...+=++.+.+.|++.+.+=+=|+    .|..|.+.++++.+... +|++-+
T Consensus       133 ~~--~~~---~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~N  189 (309)
T PF01207_consen  133 WD--DSP---EETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVIAN  189 (309)
T ss_dssp             CT----C---HHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEEEE
T ss_pred             cc--cch---hHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeEEc
Confidence            22  222   2334456788999999999887554    35799999999988877 676654

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=87.08  E-value=4  Score=34.32  Aligned_cols=108  Identities=14%  Similarity=-0.005  Sum_probs=65.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC------CCCCCCCCHH--HHHHHHhh---CCCcEEEEEccCCCCCcc-cCHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL------SEGGLTPTLG--LYRVIKRL---VLVPVFVMIRVRAGFDFV-FSQAEKEI   83 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l------~~GGlTPS~g--~i~~~~~~---~~ipv~vMIRP~R~gdF~-Ys~~E~~~   83 (146)
                      +.+..++..|.++|+++|.++-.-      ..=+.|+...  .++.+.++   .+..|  .+-+ -  ||- ....+.+.
T Consensus        74 ~~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~-~--d~~~~~r~~~~~  148 (280)
T cd07945          74 VDGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYL-E--DWSNGMRDSPDY  148 (280)
T ss_pred             cCcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEE-E--eCCCCCcCCHHH
Confidence            577888999999999999998521      1123455322  22222222   24433  3333 1  122 10223455


Q ss_pred             HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                      +.+=++.+.++|++.|.+.  +.-|..+...+.++++..+    ++++.||
T Consensus       149 ~~~~~~~~~~~G~~~i~l~--DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H  197 (280)
T cd07945         149 VFQLVDFLSDLPIKRIMLP--DTLGILSPFETYTYISDMVKRYPNLHFDFH  197 (280)
T ss_pred             HHHHHHHHHHcCCCEEEec--CCCCCCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence            5566777888999976553  6778888888888877654    3667777

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=86.98  E-value=3.9  Score=33.25  Aligned_cols=84  Identities=24%  Similarity=0.326  Sum_probs=57.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++..|.+.|||-|=|=   . .+. -+...++.++.... +|+  |  | -||=   |       .+++..+.++
T Consensus       116 ~~T~~E~~~A~~~Gad~vklF---P-a~~-~G~~~ik~l~~~~p~ip~--~--a-tGGI---~-------~~N~~~~l~a  175 (213)
T PRK06552        116 CMTVTEIVTALEAGSEIVKLF---P-GST-LGPSFIKAIKGPLPQVNV--M--V-TGGV---N-------LDNVKDWFAA  175 (213)
T ss_pred             cCCHHHHHHHHHcCCCEEEEC---C-ccc-CCHHHHHHHhhhCCCCEE--E--E-ECCC---C-------HHHHHHHHHC
Confidence            468999999999999999982   1 111 23566887777653 553  3  8 7871   1       3789999999


Q ss_pred             CCCEEEEe-eecCC-CCcCHHHHHHHH
Q psy7930          95 GADGFVIG-ALTGE-QEIDIEFIRQLK  119 (146)
Q Consensus        95 GadG~VfG-~L~~d-g~iD~~~~~~Li  119 (146)
                      |++++.+| .|... -.=|.+.+++..
T Consensus       176 Ga~~vavgs~l~~~~~~~~~~~i~~~a  202 (213)
T PRK06552        176 GADAVGIGGELNKLASQGDFDLITEKA  202 (213)
T ss_pred             CCcEEEEchHHhCccccCCHHHHHHHH
Confidence            99999999 55432 122445554443

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=86.89  E-value=5.9  Score=32.94  Aligned_cols=106  Identities=13%  Similarity=0.004  Sum_probs=56.8

Q ss_pred             HHHHHHHHcCCCEEEecCCC---CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAAL---SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l---~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      ..+..+.+.|...+|+.-+.   ...|+|+.      ...+.++++..++-+...+=.-|.    ++++..+   +-++.
T Consensus        77 ~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~----~~~~~~~---~~~~~  149 (325)
T cd01320          77 EYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRH----LSPESAQ---ETLEL  149 (325)
T ss_pred             HHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCC----CCHHHHH---HHHHH
Confidence            44566788899999987443   13355553      223344444444433322211011    1233333   33444


Q ss_pred             HHHcCCCEEEEee-e-cCCCCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930          91 FVESGADGFVIGA-L-TGEQEIDIEFIRQLKTIIG--DRPITFHRAF  133 (146)
Q Consensus        91 ~~~~GadG~VfG~-L-~~dg~iD~~~~~~Li~~a~--~~~vtFHRAF  133 (146)
                      +.+.+.+++ .|+ | -.+...+.+.++.+.+.|+  ++++++|=+-
T Consensus       150 ~~~~~~~~v-vg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E  195 (325)
T cd01320         150 ALKYRDKGV-VGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGE  195 (325)
T ss_pred             HHhccCCCE-EEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCC
Confidence            444455543 332 2 2333457788889988887  8999999653

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=86.82  E-value=1.6  Score=36.19  Aligned_cols=54  Identities=28%  Similarity=0.410  Sum_probs=38.4

Q ss_pred             CCCCCCCC---HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930          40 SEGGLTPT---LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        40 ~~GGlTPS---~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      +-||.-+.   ..+++.+++.+ ++|+.+     -||  .-|.       ++++.+.++|||+||+|=+=.+
T Consensus       156 E~gs~~g~~v~~e~i~~v~~~~~~~pl~v-----GGG--Irs~-------e~a~~l~~aGAD~VVVGs~~~~  213 (223)
T TIGR01768       156 EAGSGAPEPVPPELVAEVKKVLDKARLFV-----GGG--IRSV-------EKAREMAEAGADTIVTGNVIEE  213 (223)
T ss_pred             EecCCCCCCcCHHHHHHHHHHcCCCCEEE-----ecC--CCCH-------HHHHHHHHcCCCEEEECcHHhh
Confidence            44666666   88999999988 888866     233  3333       4566677889999999965443

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]

Probab=86.73  E-value=3.5  Score=34.55  Aligned_cols=41  Identities=27%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR   67 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIR   67 (146)
                      ..|..-+++|||-|-||.|      |+ .-++..+.+.++||+.=||.
T Consensus        66 ~~a~~Le~~GAd~i~l~~N------T~-H~~~d~iq~~~~iPllhIid  106 (230)
T COG1794          66 DAAKKLERAGADFIVLPTN------TM-HKVADDIQKAVGIPLLHIID  106 (230)
T ss_pred             HHHHHHHhcCCCEEEEeCC------cH-HHHHHHHHHhcCCCeehHHH
Confidence            4566678899999999987      33 34666777778888777774

>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]

Probab=86.73  E-value=2  Score=36.75  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHcCCCEEEe---------cCCCCCCCCCCCH-HHHHHHHh--hCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLEL---------CAALSEGGLTPTL-GLYRVIKR--LVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIEL---------c~~l~~GGlTPS~-g~i~~~~~--~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +++-...+...+.-+|-+         +..++-+  |||. +=++.+++  ..+||+.++|.| ==-..  ++   +.+.
T Consensus       131 Dld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~--apsp~~Ri~al~~l~eaGi~~~v~v~P-IiP~~--~d---~e~e  202 (297)
T COG1533         131 DLDLLLELAERGKVRVAVSITTLDEELAKILEPR--APSPEERLEALKELSEAGIPVGLFVAP-IIPGL--ND---EELE  202 (297)
T ss_pred             hHHHHHhhhhccceEEEEEeecCcHHHHHhcCCC--CcCHHHHHHHHHHHHHCCCeEEEEEec-ccCCC--Ch---HHHH
Confidence            345566666666555543         3334443  3443 33444433  248999999999 32211  33   6677


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCC
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQ  108 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg  108 (146)
                      +-+..+.+.|+..++.+.|+-.+
T Consensus       203 ~~l~~~~~ag~~~v~~~~l~~~~  225 (297)
T COG1533         203 RILEAAAEAGARVVVYGTLRLRL  225 (297)
T ss_pred             HHHHHHHHcCCCeeEeeeeeccH
Confidence            78888999999999999997654

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=86.70  E-value=2.8  Score=37.04  Aligned_cols=70  Identities=26%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CCCHHHHHHHHh-------hCC---CcEEEEEccCCCCCcc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGL----------TPTLGLYRVIKR-------LVL---VPVFVMIRVRAGFDFV   75 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TPS~g~i~~~~~-------~~~---ipv~vMIRP~R~gdF~   75 (146)
                      +.|.++++.+.+.|||=|-.    ..||.          .|....+..+.+       ..+   +||..      .|++.
T Consensus       196 V~t~e~A~~~~~aGaDgV~~----G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIA------dGGI~  265 (369)
T TIGR01304       196 VNDYTTALHLMRTGAAGVIV----GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIA------DGGIE  265 (369)
T ss_pred             CCCHHHHHHHHHcCCCEEEE----CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE------eCCCC
Confidence            68899999999999999872    22331          232333333322       122   55432      45577


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      ++        .||..+..+|||++.+|-
T Consensus       266 tg--------~di~kAlAlGAdaV~iGt  285 (369)
T TIGR01304       266 TS--------GDLVKAIACGADAVVLGS  285 (369)
T ss_pred             CH--------HHHHHHHHcCCCEeeeHH
Confidence            66        789999999999999993

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=86.59  E-value=4.7  Score=35.03  Aligned_cols=74  Identities=20%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             cCHHHHHHH-HHcCCCEEEecCCC-----CCCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          17 DSVASALAA-VRGGADRLELCAAL-----SEGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        17 ~s~~~a~~A-~~~GAdRIELc~~l-----~~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      .+.+.+..+ ...+||-+||.-+.     ..+|-+. +    ..++.+++.+++||.|=+.+     |..+       .+
T Consensus       135 ~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~-f~~~le~i~~i~~~~~vPVivK~~g-----~g~s-------~~  201 (352)
T PRK05437        135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRD-FRGWLDNIAEIVSALPVPVIVKEVG-----FGIS-------KE  201 (352)
T ss_pred             CCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCccc-HHHHHHHHHHHHHhhCCCEEEEeCC-----CCCc-------HH
Confidence            345555544 34589999986433     2233332 3    56777888888998754444     3334       46


Q ss_pred             HHHHHHHcCCCEEEEee
Q psy7930          87 DCHQFVESGADGFVIGA  103 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~  103 (146)
                      +++.+.+.|+|+|+++-
T Consensus       202 ~a~~l~~~Gvd~I~Vsg  218 (352)
T PRK05437        202 TAKRLADAGVKAIDVAG  218 (352)
T ss_pred             HHHHHHHcCCCEEEECC
Confidence            77788889999999865

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=86.58  E-value=12  Score=31.73  Aligned_cols=88  Identities=22%  Similarity=0.315  Sum_probs=60.4

Q ss_pred             CHH-HHHHHHHcC-CCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          18 SVA-SALAAVRGG-ADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        18 s~~-~a~~A~~~G-AdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      |++ .+..++..| ||-|=+-.  ..-|.+|+...++.+++.. ++|+  +|-   +| =  +.       +.+..+.+.
T Consensus       158 ~~~e~a~~~~~~~~aDavivtG--~~TG~~~d~~~l~~vr~~~~~~Pv--llg---gG-v--t~-------eNv~e~l~~  220 (257)
T TIGR00259       158 DLESIALDTVERGLADAVILSG--KTTGTEVDLELLKLAKETVKDTPV--LAG---SG-V--NL-------ENVEELLSI  220 (257)
T ss_pred             CHHHHHHHHHHhcCCCEEEECc--CCCCCCCCHHHHHHHHhccCCCeE--EEE---CC-C--CH-------HHHHHHHhh
Confidence            444 456556555 88775543  3458999999999998855 6786  332   22 1  22       233444444


Q ss_pred             CCCEEEEee-ecCCC----CcCHHHHHHHHHHhC
Q psy7930          95 GADGFVIGA-LTGEQ----EIDIEFIRQLKTIIG  123 (146)
Q Consensus        95 GadG~VfG~-L~~dg----~iD~~~~~~Li~~a~  123 (146)
                       +||+.+|= +.++|    .+|.+++++|+++++
T Consensus       221 -adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~  253 (257)
T TIGR00259       221 -ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVA  253 (257)
T ss_pred             -CCEEEECCCcccCCccCCCcCHHHHHHHHHHHH
Confidence             99999984 66778    799999999999886

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=86.58  E-value=7.5  Score=33.00  Aligned_cols=105  Identities=18%  Similarity=0.270  Sum_probs=71.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCC-CCCCCCCHHHHHHHHhhCC-CcEEEEEccCC--CCC-cccCHHHHH----HHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALS-EGGLTPTLGLYRVIKRLVL-VPVFVMIRVRA--GFD-FVFSQAEKE----IMALDCHQ   90 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~-~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R--~gd-F~Ys~~E~~----~M~~dI~~   90 (146)
                      +++....+.||+|+=|.+..- .|++-  +.+++++.+..+ =.|.+=|=- |  .|. .+|+..=.+    ...+-+..
T Consensus        95 e~i~~~l~~Ga~rViigT~Av~~~~~~--p~~v~~~~~~~G~~~IvvsiD~-k~~~g~~~Va~~GW~~~t~~~~~e~~~~  171 (262)
T PLN02446         95 ENAMSYLDAGASHVIVTSYVFRDGQID--LERLKDLVRLVGKQRLVLDLSC-RKKDGRYYVVTDRWQKFSDLAVDEETLE  171 (262)
T ss_pred             HHHHHHHHcCCCEEEEchHHHhCCCCC--HHHHHHHHHHhCCCCEEEEEEE-EecCCCEEEEECCCcccCCCCHHHHHHH
Confidence            899999999999999987433 23322  568888887762 345555555 4  443 344322211    11223577


Q ss_pred             HHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          91 FVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      +.+.|+..|++=-.+.||+   +|.+.++++.+.. ++|++
T Consensus       172 ~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~-~ipVI  211 (262)
T PLN02446        172 FLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS-PIPVT  211 (262)
T ss_pred             HHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC-CCCEE
Confidence            7888999999999999986   7999999998874 34443

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=86.52  E-value=4.1  Score=33.23  Aligned_cols=94  Identities=19%  Similarity=0.299  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCC---CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAALS---EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~---~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++..|.+.|||-|.++-++.   .|-..--...++++++.+ ++|+.|++ + .+  + -+++|+.   .=.+.+.++|
T Consensus        74 ~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIl-E-~~--~-L~~~ei~---~a~~ia~eaG  145 (211)
T TIGR00126        74 YETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVII-E-TG--L-LTDEEIR---KACEICIDAG  145 (211)
T ss_pred             HHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEE-e-cC--C-CCHHHHH---HHHHHHHHhC
Confidence            677889999999999998765   566666777888888766 68888844 3 22  3 4666554   5566889999


Q ss_pred             CCEEEEe--eecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIG--ALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG--~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ||-+-..  +-.  +.-..+..+.|.+..+
T Consensus       146 ADfvKTsTGf~~--~gat~~dv~~m~~~v~  173 (211)
T TIGR00126       146 ADFVKTSTGFGA--GGATVEDVRLMRNTVG  173 (211)
T ss_pred             CCEEEeCCCCCC--CCCCHHHHHHHHHHhc
Confidence            9976543  422  2244444444444443

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PLN02826 dihydroorotate dehydrogenase

Probab=86.49  E-value=3.1  Score=37.19  Aligned_cols=78  Identities=21%  Similarity=0.243  Sum_probs=48.9

Q ss_pred             ecCHHHHHHHHHcCCCEEEec-CCCCCCCCCCC------HHHHHHHHhh---------CCCcEEEEEccCCCCCcccCHH
Q psy7930          16 VDSVASALAAVRGGADRLELC-AALSEGGLTPT------LGLYRVIKRL---------VLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc-~~l~~GGlTPS------~g~i~~~~~~---------~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      ++++..........||-|||+ |....-|+..-      ..+++.+++.         .++||.|=|-| -     .+++
T Consensus       203 ~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaP-d-----l~~~  276 (409)
T PLN02826        203 AADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAP-D-----LSKE  276 (409)
T ss_pred             HHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCC-C-----CCHH
Confidence            344544444444569999999 43433444322      3556655432         36899999988 2     2455


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          80 EKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      ++..+   ++.+.+.|+||||.-
T Consensus       277 di~~i---a~~a~~~G~dGIi~~  296 (409)
T PLN02826        277 DLEDI---AAVALALGIDGLIIS  296 (409)
T ss_pred             HHHHH---HHHHHHcCCCEEEEE
Confidence            55444   456789999999875

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=86.46  E-value=3.2  Score=35.40  Aligned_cols=75  Identities=29%  Similarity=0.345  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCCEEEecC---CC--------------CCCCCCC--CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHH
Q psy7930          20 ASALAAVRGGADRLELCA---AL--------------SEGGLTP--TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~---~l--------------~~GGlTP--S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      +-+....++|||=|||==   +.              -.+|.|+  .+.+++++++. .++|+..|--=  .--|.|.-+
T Consensus        35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~--Npi~~~Gie  112 (265)
T COG0159          35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYY--NPIFNYGIE  112 (265)
T ss_pred             HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEec--cHHHHhhHH
Confidence            334445789999999952   11              1247777  46788888854 78999999753  113555554


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          80 EKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .|      ++.+++.|+||+++=
T Consensus       113 ~F------~~~~~~~GvdGlivp  129 (265)
T COG0159         113 KF------LRRAKEAGVDGLLVP  129 (265)
T ss_pred             HH------HHHHHHcCCCEEEeC
Confidence            43      567888999988663

>PLN00197 beta-amylase; Provisional

Probab=86.46  E-value=1.8  Score=40.44  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             CCcEEEEEccCCCCCcccCH---HHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRVRAGFDFVFSQ---AEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP~R~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||.=-    |-+=+.   ..-+.|..+++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  |+++
T Consensus       105 ~vpvyVMLPL----d~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKl  180 (573)
T PLN00197        105 GVPVYVMMPL----DSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKV  180 (573)
T ss_pred             CeeEEEEeec----ceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence            5999999854    122111   23457899999999999999987    66653  57899999999999997  5654


Q ss_pred             EEeeccc
Q psy7930         128 TFHRAFD  134 (146)
Q Consensus       128 tFHRAFD  134 (146)
                      --=+.|-
T Consensus       181 q~VmSFH  187 (573)
T PLN00197        181 QAVMSFH  187 (573)
T ss_pred             EEEEEec
Confidence            4334444

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=86.35  E-value=3.6  Score=31.66  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCC--CCCCCH---HHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEG--GLTPTL---GLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~G--GlTPS~---g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +..+...+...++|.+=+-+ +..|  |-+-..   ..++++++..     ++|+.+-     ||        +..  ++
T Consensus       116 ~~~~~~~~~~~~~d~i~~~~-~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~-----GG--------I~~--en  179 (211)
T cd00429         116 TPVEVLEPYLDEVDLVLVMS-VNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD-----GG--------INL--ET  179 (211)
T ss_pred             CCHHHHHHHHhhCCEEEEEE-ECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE-----CC--------CCH--HH
Confidence            34444455555688776533 2223  322222   3444554444     3676442     22        111  56


Q ss_pred             HHHHHHcCCCEEEEee
Q psy7930          88 CHQFVESGADGFVIGA  103 (146)
Q Consensus        88 I~~~~~~GadG~VfG~  103 (146)
                      +..+.+.|+||||+|-
T Consensus       180 v~~~~~~gad~iivgs  195 (211)
T cd00429         180 IPLLAEAGADVLVAGS  195 (211)
T ss_pred             HHHHHHcCCCEEEECH
Confidence            8889999999999994

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=86.21  E-value=4.1  Score=33.00  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             HHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          26 VRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        26 ~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      .+.|+ + +|+.+.+..|+  -|...+++++.+.+++||.+     -|| .. |.       +|++.+.+.|++|+++|=
T Consensus       151 ~~~g~-~-ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia-----~GG-i~-s~-------ed~~~l~~~Ga~~vivgs  214 (221)
T TIGR00734       151 NSFDY-G-LIVLDIHSVGTMKGPNLELLTKTLELSEHPVML-----GGG-IS-GV-------EDLELLKEMGVSAVLVAT  214 (221)
T ss_pred             HhcCC-E-EEEEECCccccCCCCCHHHHHHHHhhCCCCEEE-----eCC-CC-CH-------HHHHHHHHCCCCEEEEhH
Confidence            45677 5 77777777654  36789999999998999754     244 32 33       456667778999999984


Q ss_pred             ecCCC
Q psy7930         104 LTGEQ  108 (146)
Q Consensus       104 L~~dg  108 (146)
                      .=-+|
T Consensus       215 al~~g  219 (221)
T TIGR00734       215 AVHKG  219 (221)
T ss_pred             HhhCC
Confidence            43333

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=86.20  E-value=7.1  Score=36.15  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCC-------CCCCCCHHHHHHHHhhCCCc-EEEEEccCCCCC---c------------
Q psy7930          18 SVASALAAVRGGADRLELCAALSE-------GGLTPTLGLYRVIKRLVLVP-VFVMIRVRAGFD---F------------   74 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~-------GGlTPS~g~i~~~~~~~~ip-v~vMIRP~R~gd---F------------   74 (146)
                      .++++....+.|||||=|.+..-.       -|---...+++++.+..+-- |.|-|=+ |.+-   .            
T Consensus       336 ~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~-k~~~~~~~~~~~~~~~~~~~  414 (538)
T PLN02617        336 SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP-RRVYVKDPSDVPFKTVKVTN  414 (538)
T ss_pred             hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec-CcCcccCccccccccccccc
Confidence            358899999999999999983211       12222578999998887544 8888888 4330   0            


Q ss_pred             ------------ccCHH-----HHHHHHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          75 ------------VFSQA-----EKEIMALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        75 ------------~Ys~~-----E~~~M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                                  +|+..     ++. ..+=++.+.++||..+++=-.+.||+   .|.+.++++.++. +.|++
T Consensus       415 ~~~~~~~~~~~~v~~~gg~~~~~~~-~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~-~ipvi  486 (538)
T PLN02617        415 PGPNGEEYAWYQCTVKGGREGRPIG-AYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAV-TIPVI  486 (538)
T ss_pred             cCcCcccceEEEEEEecCcccCCCC-HHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhC-CCCEE
Confidence                        22211     111 12346777889999999999999986   7999998888764 45554

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=86.17  E-value=4.6  Score=34.13  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=55.7

Q ss_pred             HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEE--EEEccCCC---CCccc---CHHHHHHHHHHHHHHH
Q psy7930          22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVF--VMIRVRAG---FDFVF---SQAEKEIMALDCHQFV   92 (146)
Q Consensus        22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~--vMIRP~R~---gdF~Y---s~~E~~~M~~dI~~~~   92 (146)
                      +....+ +||+=|-|=+     |. -....++.++ ..+|||+  +=+.|++-   |+|.-   ++++.+.+.++.+.+.
T Consensus        99 a~r~~~~aGa~aVkiEd-----g~-~~~~~I~al~-~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~  171 (264)
T PRK00311         99 AGRLMKEAGAHAVKLEG-----GE-EVAETIKRLV-ERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALE  171 (264)
T ss_pred             HHHHHHHhCCeEEEEcC-----cH-HHHHHHHHHH-HCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHH
Confidence            344445 8998887743     31 1123344333 2488873  33678322   34432   6788999999999999


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ++||+++|+=++.+      +..+++.+..
T Consensus       172 eAGA~~i~lE~v~~------~~~~~i~~~l  195 (264)
T PRK00311        172 EAGAFALVLECVPA------ELAKEITEAL  195 (264)
T ss_pred             HCCCCEEEEcCCCH------HHHHHHHHhC
Confidence            99999999976632      4555555544

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=85.97  E-value=4.3  Score=35.58  Aligned_cols=82  Identities=22%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC-----CHHHHHHHHhhCC--CcEEEEEccCCCCCcc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP-----TLGLYRVIKRLVL--VPVFVMIRVRAGFDFV   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP-----S~g~i~~~~~~~~--ipv~vMIRP~R~gdF~   75 (146)
                      +.|..|+++|+|-|||-.+-                 .-||---     ...+++.+++.++  .||-|=|+|-.+.+|.
T Consensus       148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~  227 (361)
T cd04747         148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT  227 (361)
T ss_pred             HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence            67888999999999998632                 0133110     1357778888774  6676655551124554


Q ss_pred             cC-HHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          76 FS-QAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        76 Ys-~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +. ..+.+.|.+=++.+.++|+|-|-+
T Consensus       228 ~~~g~~~~e~~~~~~~l~~~gvd~i~v  254 (361)
T cd04747         228 ARLADTPDELEALLAPLVDAGVDIFHC  254 (361)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            32 133445566667778889998755

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=85.96  E-value=4.5  Score=33.95  Aligned_cols=85  Identities=20%  Similarity=0.341  Sum_probs=56.4

Q ss_pred             HHHHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHh--hCCCcEE--EEEccCCCC----Cccc---CHHHHHHHHHHHH
Q psy7930          22 ALAAVR-GGADRLELCAALSEGGLTPTLGLYRVIKR--LVLVPVF--VMIRVRAGF----DFVF---SQAEKEIMALDCH   89 (146)
Q Consensus        22 a~~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~--~~~ipv~--vMIRP~R~g----dF~Y---s~~E~~~M~~dI~   89 (146)
                      +....+ .||+=|-|=+     |    ....+.++.  ..+|||.  +-+-| |.-    +|.=   ++++.+.+.++.+
T Consensus        96 a~r~~~~aGa~aVkiEd-----~----~~~~~~I~al~~agipV~gHiGL~p-q~~~~~gg~~~~grt~~~a~~~i~ra~  165 (254)
T cd06557          96 AARLMKEAGADAVKLEG-----G----AEVAETIRALVDAGIPVMGHIGLTP-QSVNQLGGYKVQGKTEEEAERLLEDAL  165 (254)
T ss_pred             HHHHHHHhCCeEEEEcC-----c----HHHHHHHHHHHHcCCCeeccccccc-eeeeccCCceeccCCHHHHHHHHHHHH
Confidence            344555 8999887743     3    233333333  2478865  45778 543    3322   6888999999999


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      .+.++||+++++=++.      .+..+++.+..
T Consensus       166 a~~~AGA~~i~lE~v~------~~~~~~i~~~v  192 (254)
T cd06557         166 ALEEAGAFALVLECVP------AELAKEITEAL  192 (254)
T ss_pred             HHHHCCCCEEEEcCCC------HHHHHHHHHhC
Confidence            9999999999997763      24556666554

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=85.83  E-value=15  Score=30.19  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             CHHH-HHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVAS-ALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~-a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++.+ |..-.+.||++|-+.+==..| |--|...+++++.+..++||.+      +|+.. |.       +|++.+.++|
T Consensus        31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~------gGGi~-s~-------~d~~~l~~~G   96 (258)
T PRK01033         31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCY------GGGIK-TL-------EQAKKIFSLG   96 (258)
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEE------CCCCC-CH-------HHHHHHHHCC
Confidence            5544 455567799999877633333 5678999999999988899744      23221 11       5677778899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ++++++|.-.   --|.+.++++.+..+
T Consensus        97 ~~~vvigs~~---~~~~~~~~~~~~~~~  121 (258)
T PRK01033         97 VEKVSINTAA---LEDPDLITEAAERFG  121 (258)
T ss_pred             CCEEEEChHH---hcCHHHHHHHHHHhC
Confidence            9999999532   124677888887764

>PRK09061 D-glutamate deacylase; Validated

Probab=85.83  E-value=20  Score=32.54  Aligned_cols=101  Identities=18%  Similarity=0.125  Sum_probs=67.5

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ...|.+.||.-+-....+. .+.  +.+.+..+.+   ..+.||.+.++-   .+..-...|.+.+.+.++.+++.|+. 
T Consensus       175 l~~al~~Ga~gis~~~~y~-p~~--~~~eL~~l~~~A~~~g~~v~~H~e~---~~~~~~~~e~~av~~~i~lA~~~G~r-  247 (509)
T PRK09061        175 LEQGLDEGALGIGIGAGYA-PGT--GHKEYLELARLAARAGVPTYTHVRY---LSNVDPRSSVDAYQELIAAAAETGAH-  247 (509)
T ss_pred             HHHHHHCCCCEEecCCccC-CCC--CHHHHHHHHHHHHHcCCEEEEEecC---cccCCchhHHHHHHHHHHHHHHhCCC-
Confidence            3445578999988743322 233  3333333333   247888776664   22222467889999999999999987 


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      +.+.=++..+.-+.+...++++.|+  ++++|+
T Consensus       248 v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~  280 (509)
T PRK09061        248 MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTT  280 (509)
T ss_pred             EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEE
Confidence            7777888887778787778888775  666653

>KOG1606|consensus

Probab=85.77  E-value=1.4  Score=37.37  Aligned_cols=57  Identities=28%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCC-----CCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930          16 VDSVASALAAVRGGADRLELCAA-----LSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~-----l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~   75 (146)
                      +-|.++|+.|+++||=-+=-...     -+.||..  |...+|+++++.++|||  |-+- |-|.|+
T Consensus        28 Vv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiPV--MAk~-RiGHFV   91 (296)
T KOG1606|consen   28 VVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIPV--MAKV-RIGHFV   91 (296)
T ss_pred             ecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccchh--hhhh-hhhhhh
Confidence            46899999999999944322221     1467764  67889999999999998  7777 778897

>PRK02227 hypothetical protein; Provisional

Probab=85.63  E-value=20  Score=30.20  Aligned_cols=83  Identities=27%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      |=|-+-|.++|..|.++|||=|-+-.  .=++|++.  ..+++++++.++  .||..     --|||-|.+.++..   -
T Consensus         3 lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~--p~vir~Iv~~~~~~~pvSA-----tiGD~p~~p~~~~~---a   72 (238)
T PRK02227          3 LLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANF--PWVIREIVAAVPGRKPVSA-----TIGDVPYKPGTISL---A   72 (238)
T ss_pred             eeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCC--HHHHHHHHHHhCCCCCcee-----eccCCCCCchHHHH---H
Confidence            33668899999999999999999875  23455554  467888888764  45443     35788888765554   3


Q ss_pred             HHHHHHcCCCEEEEeee
Q psy7930          88 CHQFVESGADGFVIGAL  104 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L  104 (146)
                      +..+...|+|=|=+|.-
T Consensus        73 a~~~a~~GvDyVKvGl~   89 (238)
T PRK02227         73 ALGAAATGADYVKVGLY   89 (238)
T ss_pred             HHHHHhhCCCEEEEcCC
Confidence            44455667776666654

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=85.57  E-value=13  Score=31.28  Aligned_cols=84  Identities=26%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +|=+-+-|.++|..|.++|||=|-|-.  .=++|.+  +..+++++++.++  .||..-     -||+.|.+..+..   
T Consensus         2 ~lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~--~~~vi~~i~~~~~~~~pvSAt-----iGDlp~~p~~~~~---   71 (235)
T PF04476_consen    2 KLLVSVRNVEEAEEALAGGADIIDLKNPAEGALGAL--FPWVIREIVAAVPGRKPVSAT-----IGDLPMKPGTASL---   71 (235)
T ss_pred             ceeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCC--CHHHHHHHHHHcCCCCceEEE-----ecCCCCCchHHHH---
Confidence            344678899999999999999999985  3355654  5778899988764  555543     4677777655442   


Q ss_pred             HHHHHHHcCCCEEEEeee
Q psy7930          87 DCHQFVESGADGFVIGAL  104 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L  104 (146)
                      -.......|+|=|=+|.-
T Consensus        72 aa~~~a~~GvdyvKvGl~   89 (235)
T PF04476_consen   72 AALGAAATGVDYVKVGLF   89 (235)
T ss_pred             HHHHHHhcCCCEEEEecC
Confidence            222233457777777754

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=85.56  E-value=7.3  Score=32.64  Aligned_cols=87  Identities=25%  Similarity=0.266  Sum_probs=62.4

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      =|++|+++||--|-..          +..-++++++.+++||.=+|.-    |+-=|+-=+.--..|++.+.+.|++=+.
T Consensus        38 mA~Aa~~gGAvgiR~~----------gv~dIkai~~~v~vPIIGIiKr----d~~~s~v~ITptlkeVd~L~~~Ga~IIA  103 (229)
T COG3010          38 MALAAEQGGAVGIRIE----------GVEDIKAIRAVVDVPIIGIIKR----DYPDSPVRITPTLKEVDALAEAGADIIA  103 (229)
T ss_pred             HHHHHHhCCcceEeec----------chhhHHHHHhhCCCCeEEEEec----CCCCCCceecccHHHHHHHHHCCCcEEE
Confidence            4788999999655433          5778999999999999988864    2323333345567899999999999999


Q ss_pred             EeeecCCCCcCHHHHHHHHHHhC
Q psy7930         101 IGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       101 fG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |=+-...- -|- .+++|++..+
T Consensus       104 ~DaT~R~R-P~~-~~~~~i~~~k  124 (229)
T COG3010         104 FDATDRPR-PDG-DLEELIARIK  124 (229)
T ss_pred             eecccCCC-Ccc-hHHHHHHHhh
Confidence            98755432 332 5567777654

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=85.50  E-value=6.7  Score=35.06  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=61.0

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      ++++.+.+..++|+|-|++-.+   .|-++. ...++.+++.. ++||.+        +.+-|.       ++.+.+.++
T Consensus       224 ~~~~r~~~L~~aG~d~I~vd~a---~g~~~~~~~~i~~i~~~~~~~~vi~--------G~v~t~-------~~a~~l~~a  285 (450)
T TIGR01302       224 FDKERAEALVKAGVDVIVIDSS---HGHSIYVIDSIKEIKKTYPDLDIIA--------GNVATA-------EQAKALIDA  285 (450)
T ss_pred             hHHHHHHHHHHhCCCEEEEECC---CCcHhHHHHHHHHHHHhCCCCCEEE--------EeCCCH-------HHHHHHHHh
Confidence            4578899999999999999764   245553 34677777663 677654        244454       456677889


Q ss_pred             CCCEEEEee------ecC----CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          95 GADGFVIGA------LTG----EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        95 GadG~VfG~------L~~----dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      |||+|.+|.      .|.    -|--...++.++.++++  +.|+
T Consensus       286 Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpv  330 (450)
T TIGR01302       286 GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPV  330 (450)
T ss_pred             CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeE
Confidence            999998884      332    13334566666776664  4444

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=85.46  E-value=5.2  Score=31.68  Aligned_cols=93  Identities=19%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCC---CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAALS---EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~---~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++..|.+.|||=|+.+-+..   .|-..-....+.++++.. ++|+.|++-.  +..   ++++   +..=.+.+.++|
T Consensus        73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~--~~l---~~~~---i~~a~ria~e~G  144 (203)
T cd00959          73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET--GLL---TDEE---IIKACEIAIEAG  144 (203)
T ss_pred             HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEec--CCC---CHHH---HHHHHHHHHHhC
Confidence            568889999999999998764   344444566777777765 5888885443  332   4444   445567899999


Q ss_pred             CCEEEEe--eecCCCCcCHHHHHHHHHHh
Q psy7930          96 ADGFVIG--ALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        96 adG~VfG--~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||-|=..  ...  +.-..+..+.+.+.+
T Consensus       145 aD~IKTsTG~~~--~~at~~~v~~~~~~~  171 (203)
T cd00959         145 ADFIKTSTGFGP--GGATVEDVKLMKEAV  171 (203)
T ss_pred             CCEEEcCCCCCC--CCCCHHHHHHHHHHh
Confidence            9977665  432  223444444444444

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR00433 bioB biotin synthetase

Probab=85.46  E-value=19  Score=29.48  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=54.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCH----HHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTL----GLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~----g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      ++.+..+.+.|++|+-+.+    +|..|..    ..++.+++.. +..+.+.+.+   | +. +       .+.++.+++
T Consensus        68 ~~~~~~~~~~g~~~~~l~~----~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~---g-~~-~-------~e~l~~Lk~  131 (296)
T TIGR00433        68 LEEARKAKAAGATRFCLVA----SGRGPKDREFMEYVEAMVQIVEEMGLKTCATL---G-LL-D-------PEQAKRLKD  131 (296)
T ss_pred             HHHHHHHHHCCCCEEEEEE----ecCCCChHHHHHHHHHHHHHHHhCCCeEEecC---C-CC-C-------HHHHHHHHH
Confidence            3444455678999988765    4555553    3444444321 2334445554   3 22 2       356778899


Q ss_pred             cCCCEEEEeeecCC-------CCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930          94 SGADGFVIGALTGE-------QEIDIEFIRQLKTIIG--DRPITFHRAF  133 (146)
Q Consensus        94 ~GadG~VfG~L~~d-------g~iD~~~~~~Li~~a~--~~~vtFHRAF  133 (146)
                      +|++.+-+|+=..+       +.-+.+...+.++.++  |+++..|--|
T Consensus       132 aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~  180 (296)
T TIGR00433       132 AGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF  180 (296)
T ss_pred             cCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence            99999999954211       1123333333333333  6777777655

Catalyzes the last step of the biotin biosynthesis pathway.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=85.39  E-value=5.8  Score=34.78  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCC-CCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAAL-SEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l-~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +=+|.+|+..+++.++.|+-=+|=-.++ ..| |++ ....++.+++..++||  ++=-   |  .=++       .|..
T Consensus       201 ~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~~~vpV--ivdA---G--Ig~~-------sda~  265 (326)
T PRK11840        201 MVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEGATVPV--LVDA---G--VGTA-------SDAA  265 (326)
T ss_pred             EEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHHcCCCcE--EEeC---C--CCCH-------HHHH
Confidence            4679999999999999999666653333 322 444 6788888888877675  4422   2  1111       6788


Q ss_pred             HHHHcCCCEEEE--eeecCCCCcCHHHHHHHHH
Q psy7930          90 QFVESGADGFVI--GALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        90 ~~~~~GadG~Vf--G~L~~dg~iD~~~~~~Li~  120 (146)
                      .+-++|+||+-+  |+.+.   =|...|.+-..
T Consensus       266 ~AmelGadgVL~nSaIa~a---~dPv~Ma~A~~  295 (326)
T PRK11840        266 VAMELGCDGVLMNTAIAEA---KNPVLMARAMK  295 (326)
T ss_pred             HHHHcCCCEEEEcceeccC---CCHHHHHHHHH
Confidence            899999999754  34333   35555554443

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=85.23  E-value=1.5  Score=37.03  Aligned_cols=88  Identities=14%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +-+..+.+.|||||-||+.  .|-+||.  +.+++.+++..+ +|+.+---- .-|        +.  ..-...+.++|+
T Consensus       159 ~~~~~~~~~G~d~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn-~~G--------la--~AN~laA~~aG~  225 (287)
T PRK05692        159 DVAERLFALGCYEISLGDT--IGVGTPGQVRAVLEAVLAEFPAERLAGHFHD-TYG--------QA--LANIYASLEEGI  225 (287)
T ss_pred             HHHHHHHHcCCcEEEeccc--cCccCHHHHHHHHHHHHHhCCCCeEEEEecC-CCC--------cH--HHHHHHHHHhCC
Confidence            3456788899999999994  7888994  778888888775 777665544 222        11  123344567788


Q ss_pred             CEE---EEeeec------CCCCcCHHHHHHHHH
Q psy7930          97 DGF---VIGALT------GEQEIDIEFIRQLKT  120 (146)
Q Consensus        97 dG~---VfG~L~------~dg~iD~~~~~~Li~  120 (146)
                      +-|   +-|.=-      .-|..+.+.+-..++
T Consensus       226 ~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~  258 (287)
T PRK05692        226 TVFDASVGGLGGCPYAPGASGNVATEDVLYMLH  258 (287)
T ss_pred             CEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence            754   222101      245666665555554

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=84.95  E-value=4.8  Score=36.87  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             eEEE---ecCHHHHHHHHHcCCCEEEecCC--------CCCCCCCCCHHHHHHHHhhC-------C--CcEEEEEccCCC
Q psy7930          12 LEVC---VDSVASALAAVRGGADRLELCAA--------LSEGGLTPTLGLYRVIKRLV-------L--VPVFVMIRVRAG   71 (146)
Q Consensus        12 lEvc---v~s~~~a~~A~~~GAdRIELc~~--------l~~GGlTPS~g~i~~~~~~~-------~--ipv~vMIRP~R~   71 (146)
                      +.|.   |.+.+++..+.++|||-|-..-.        ...|.-.|....+..+.+..       +  +||.      ..
T Consensus       285 ~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~vi------ad  358 (502)
T PRK07107        285 VKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPIC------SD  358 (502)
T ss_pred             ceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEE------Ec
Confidence            4454   46678899999999999977432        23444456666666665532       4  6643      24


Q ss_pred             CCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          72 FDFVFSQAEKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                      |++.|+        .||..+..+|||.+-+|=+=
T Consensus       359 gGir~~--------gdi~KAla~GA~~vm~G~~~  384 (502)
T PRK07107        359 GGIVYD--------YHMTLALAMGADFIMLGRYF  384 (502)
T ss_pred             CCCCch--------hHHHHHHHcCCCeeeeChhh
Confidence            668888        78999999999999999663

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=84.92  E-value=11  Score=31.42  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +..-.+.|.+.||+=.    ++..|. ...++.+++..  +.++.++.|+ +.-++. .+.     ..+++.+++.|++.
T Consensus        26 ~~~L~~~Gv~~IE~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~-~~~-----~~~~~~a~~~g~~~   94 (273)
T cd07941          26 ARKLDELGVDYIEGGW----PGSNPKDTEFFARAKKLKLKHAKLAAFGST-RRAGVK-AEE-----DPNLQALLEAGTPV   94 (273)
T ss_pred             HHHHHHcCCCEEEecC----CcCCHHHHHHHHHHHHcCCCCcEEEEEecc-cccCCC-ccc-----hHHHHHHHhCCCCE
Confidence            3445678999999922    233443 33455554432  5788888888 554443 111     15677788889998


Q ss_pred             EEEeeecCCC----------CcCHHHHHHHHHHhC--CCCeEE
Q psy7930          99 FVIGALTGEQ----------EIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        99 ~VfG~L~~dg----------~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      +.+-.=..|.          +=+.+.+.++++.|+  |+.+.|
T Consensus        95 i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~  137 (273)
T cd07941          95 VTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIF  137 (273)
T ss_pred             EEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            7765433322          113445566677665  666665

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=84.89  E-value=22  Score=30.04  Aligned_cols=108  Identities=19%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecC-CCC---CC---CCCCCHH-HH---HHHHhhCCCc-EEEEEccCCCCCccc
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCA-ALS---EG---GLTPTLG-LY---RVIKRLVLVP-VFVMIRVRAGFDFVF   76 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~-~l~---~G---GlTPS~g-~i---~~~~~~~~ip-v~vMIRP~R~gdF~Y   76 (146)
                      .++.=..+.+..+|+.++++|.|=| |.. ++.   .|   +..-|.. ++   +.+.+.++.| |.+=+ |  .|+|.-
T Consensus        15 ~~i~~~tayD~~sArl~e~aG~d~i-~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~-p--fg~y~~   90 (264)
T PRK00311         15 EKIVMLTAYDYPFAKLFDEAGVDVI-LVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM-P--FGSYQA   90 (264)
T ss_pred             CCEEEEeCCCHHHHHHHHHcCCCEE-EECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC-C--CCCccC
Confidence            3566678899999999999999999 554 221   22   1222333 33   3334445665 44412 6  455544


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      |.  -+...+-++.+++.||+|+=+    +||.--.+.++.+++  .+.||.
T Consensus        91 ~~--~~av~~a~r~~~~aGa~aVki----Edg~~~~~~I~al~~--agIpV~  134 (264)
T PRK00311         91 SP--EQALRNAGRLMKEAGAHAVKL----EGGEEVAETIKRLVE--RGIPVM  134 (264)
T ss_pred             CH--HHHHHHHHHHHHHhCCeEEEE----cCcHHHHHHHHHHHH--CCCCEe
Confidence            43  345667788888899999876    344322344444443  266664

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=84.76  E-value=5  Score=35.44  Aligned_cols=80  Identities=15%  Similarity=0.151  Sum_probs=60.2

Q ss_pred             eEEEec---CHHHHHHHHHcCCCEEE-------ecCCCCC-CCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccC
Q psy7930          12 LEVCVD---SVASALAAVRGGADRLE-------LCAALSE-GGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        12 lEvcv~---s~~~a~~A~~~GAdRIE-------Lc~~l~~-GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys   77 (146)
                      ++|++.   +.+++..+.++|||-|-       .|..=.. |--.|....+..+.+..   ++||.      ..|++.|+
T Consensus       151 ~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI------aDGGIr~~  224 (343)
T TIGR01305       151 HTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHII------SDGGCTCP  224 (343)
T ss_pred             CeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEE------EcCCcCch
Confidence            566655   67999999999999887       5654344 44449888888887765   45553      24568888


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                              .||..+..+|||.+-+|-|-
T Consensus       225 --------gDI~KALA~GAd~VMlG~ll  244 (343)
T TIGR01305       225 --------GDVAKAFGAGADFVMLGGMF  244 (343)
T ss_pred             --------hHHHHHHHcCCCEEEECHhh
Confidence                    78999999999999999664

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=84.69  E-value=23  Score=29.91  Aligned_cols=88  Identities=22%  Similarity=0.248  Sum_probs=67.4

Q ss_pred             HHHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+.|..=++.||.++.|.+ +=+..|-.-....++++.+.+++||.|      ||+-.=        .++++.+.++|++
T Consensus        34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQv------GGGIRs--------~~~v~~ll~~G~~   99 (241)
T COG0106          34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQV------GGGIRS--------LEDVEALLDAGVA   99 (241)
T ss_pred             HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEe------eCCcCC--------HHHHHHHHHCCCC
Confidence            4666677789999999997 323445566779999999999999876      443321        2678889999999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      -+++|-..   --|.+.++++++.-+
T Consensus       100 rViiGt~a---v~~p~~v~~~~~~~g  122 (241)
T COG0106         100 RVIIGTAA---VKNPDLVKELCEEYG  122 (241)
T ss_pred             EEEEecce---ecCHHHHHHHHHHcC
Confidence            99999655   568888888888776

>TIGR00035 asp_race aspartate racemase

Probab=84.57  E-value=1.4  Score=35.52  Aligned_cols=68  Identities=19%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             CCCCCC--CHHHHHHHHhhC-------CCcEEEEEccCCCCCc---cc--C-HHHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          41 EGGLTP--TLGLYRVIKRLV-------LVPVFVMIRVRAGFDF---VF--S-QAEKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        41 ~GGlTP--S~g~i~~~~~~~-------~ipv~vMIRP~R~gdF---~Y--s-~~E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                      .||+.|  +..+++.+.+.+       .+|+.++-.| .-.|.   ..  + ++=...|.+.++.+.+.|+|-+|++|-|
T Consensus         7 iGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~-~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNT   85 (229)
T TIGR00035         7 LGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNP-NIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNT   85 (229)
T ss_pred             ecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCC-CHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence            489999  456677666543       4788888887 44332   12  1 2356678899999999999999999999


Q ss_pred             CCCC
Q psy7930         106 GEQE  109 (146)
Q Consensus       106 ~dg~  109 (146)
                      ....
T Consensus        86 ah~~   89 (229)
T TIGR00035        86 AHKF   89 (229)
T ss_pred             HHHH
Confidence            7654

>PRK06256 biotin synthase; Validated

Probab=84.53  E-value=11  Score=31.74  Aligned_cols=66  Identities=20%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHH-------HHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLG-------LYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g-------~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..+.+.|+.|+-|.+    ||..|+..       +++.+++.  ..+.+.+..   | . -++       +.++.++++
T Consensus       100 ~~~~~~~g~~~~~l~~----~g~~p~~~~~~~~~e~i~~i~~~--~~i~~~~~~---g-~-l~~-------e~l~~Lkea  161 (336)
T PRK06256        100 AKEAIEEGAGTFCIVA----SGRGPSGKEVDQVVEAVKAIKEE--TDLEICACL---G-L-LTE-------EQAERLKEA  161 (336)
T ss_pred             HHHHHHCCCCEEEEEe----cCCCCCchHHHHHHHHHHHHHhc--CCCcEEecC---C-c-CCH-------HHHHHHHHh
Confidence            4445667999988875    56666542       33333333  334444444   2 1 222       445678889


Q ss_pred             CCCEEEEeeec
Q psy7930          95 GADGFVIGALT  105 (146)
Q Consensus        95 GadG~VfG~L~  105 (146)
                      |++.+.+|+=+
T Consensus       162 G~~~v~~~lEt  172 (336)
T PRK06256        162 GVDRYNHNLET  172 (336)
T ss_pred             CCCEEecCCcc
Confidence            99999887543

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=84.33  E-value=25  Score=30.04  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCCCC--------cccC-HHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAGFD--------FVFS-QAEK   81 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~gd--------F~Ys-~~E~   81 (146)
                      .+++.+..|.+.|.+-|=.=     |-.-|=-.-++..++.      .++||-.-|-- -+|.        =.|| ++|.
T Consensus        85 ~~~e~i~~Ai~~GftSVM~D-----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~-vgg~ed~~~~~~~~~T~pe~a  158 (283)
T PRK07998         85 KTFEDVKQAVRAGFTSVMID-----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGA-ILGKEDDHVSEADCKTEPEKV  158 (283)
T ss_pred             CCHHHHHHHHHcCCCEEEEe-----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecc-CCCccccccccccccCCHHHH
Confidence            47899999999999888762     2222322344444432      48888777754 3321        1243 3333


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCC-----CcCHHHHHHHHHHhCCCCeEEeec
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQ-----EIDIEFIRQLKTIIGDRPITFHRA  132 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg-----~iD~~~~~~Li~~a~~~~vtFHRA  132 (146)
                            .+.+++.|+|-+-+.+=|..|     .||.++++++.+.. +.|+++|=.
T Consensus       159 ------~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~-~vPLVlHGg  207 (283)
T PRK07998        159 ------KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS-PVPLVIHGG  207 (283)
T ss_pred             ------HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC-CCCEEEeCC
Confidence                  445567899977776655444     58999999997765 899999954

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=84.06  E-value=9.4  Score=33.35  Aligned_cols=64  Identities=28%  Similarity=0.325  Sum_probs=43.8

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +..+.+.||+||-||+.  .|.+||.  ..+++.+++..++|+-+.--- .-        .+..  .-...+.++||+-
T Consensus       151 ~~~~~~~Ga~~I~l~DT--~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn-d~--------GlA~--AN~laAv~aGa~~  216 (378)
T PRK11858        151 AKAAEEAGADRVRFCDT--VGILDPFTMYELVKELVEAVDIPIEVHCHN-DF--------GMAT--ANALAGIEAGAKQ  216 (378)
T ss_pred             HHHHHhCCCCEEEEecc--CCCCCHHHHHHHHHHHHHhcCCeEEEEecC-Cc--------CHHH--HHHHHHHHcCCCE
Confidence            45678899999999995  5999994  678888888777777655443 21        2222  3344455688863

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=83.96  E-value=11  Score=33.96  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +.+.+....++|+|-|-+=+.  .|--..-..+++.+++.. +++|.+   .     .+-|.       ++.+.+.++|+
T Consensus       154 ~~~~v~~lv~aGvDvI~iD~a--~g~~~~~~~~v~~ik~~~p~~~vi~---g-----~V~T~-------e~a~~l~~aGa  216 (404)
T PRK06843        154 TIERVEELVKAHVDILVIDSA--HGHSTRIIELVKKIKTKYPNLDLIA---G-----NIVTK-------EAALDLISVGA  216 (404)
T ss_pred             HHHHHHHHHhcCCCEEEEECC--CCCChhHHHHHHHHHhhCCCCcEEE---E-----ecCCH-------HHHHHHHHcCC
Confidence            347889999999999988443  232233456788888765 555432   1     12222       45666778999


Q ss_pred             CEEEEeeec----------CCCCcCHHHHHHHHHHhC
Q psy7930          97 DGFVIGALT----------GEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        97 dG~VfG~L~----------~dg~iD~~~~~~Li~~a~  123 (146)
                      |+|.+|.=-          .-|.-+..++..+.+.++
T Consensus       217 D~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~  253 (404)
T PRK06843        217 DCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCK  253 (404)
T ss_pred             CEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHh
Confidence            999998521          112235566656666554

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=83.82  E-value=3.3  Score=35.73  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      +.|..|+++|.|=|||..+-                 .-||- +      ...+++.+++.++.||.+=|+|   .+|..
T Consensus       146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~~~~v~vRis~---~d~~~  221 (337)
T PRK13523        146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVWDGPLFVRISA---SDYHP  221 (337)
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCeEEEecc---cccCC
Confidence            67888999999999998641                 11441 1      1347788888777776554444   45554


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEeeec-----CC--CCcCHHHHHHHHHHhCCCCe
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGALT-----GE--QEIDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~-----~d--g~iD~~~~~~Li~~a~~~~v  127 (146)
                      ...+.+.+.+=++.+.+.|+|-|-+-.=+     .+  ...+.+..+++.+.. +.||
T Consensus       222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~ipV  278 (337)
T PRK13523        222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA-NIAT  278 (337)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc-CCcE
Confidence            33345556666677778899988764311     01  112556666655543 3454

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type

Probab=83.81  E-value=14  Score=32.61  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=56.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCC-----HHHHHHHHhhCCCcEEE-EEc----c-CCCCCcccCHH-----
Q psy7930          17 DSVASALAAVRGGADRLELCAA-LSEGGLTPT-----LGLYRVIKRLVLVPVFV-MIR----V-RAGFDFVFSQA-----   79 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS-----~g~i~~~~~~~~ipv~v-MIR----P-~R~gdF~Ys~~-----   79 (146)
                      +-.+.+..+.+.|++-||+-.. +-.-+.+++     ..-+++..+..++.|.. .++    | -..|+|.-.+.     
T Consensus        33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~  112 (382)
T TIGR02631        33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRY  112 (382)
T ss_pred             CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHH
Confidence            4456677799999999999742 333455443     34667777777877543 222    1 02356766544     


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEE
Q psy7930          80 EKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      .++.+++-|+.++++|++-||+
T Consensus       113 ai~~~kraId~A~eLGa~~v~v  134 (382)
T TIGR02631       113 ALRKVLRNMDLGAELGAETYVV  134 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEE
Confidence            3677899999999999997765

This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=83.67  E-value=16  Score=30.63  Aligned_cols=18  Identities=28%  Similarity=0.372  Sum_probs=15.3

Q ss_pred             HHHHHHHHcCCCEEEEee
Q psy7930          86 LDCHQFVESGADGFVIGA  103 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~  103 (146)
                      ++++.+.+.||||||+|-
T Consensus       215 e~~~~~~~~GADGvVVGS  232 (263)
T CHL00200        215 EQIKQIKGWNINGIVIGS  232 (263)
T ss_pred             HHHHHHHhcCCCEEEECH
Confidence            467778889999999994

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=83.52  E-value=16  Score=29.98  Aligned_cols=105  Identities=17%  Similarity=-0.011  Sum_probs=64.7

Q ss_pred             cCHHHHHHHHHcC----CCEEEecCCCCCC------CCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          17 DSVASALAAVRGG----ADRLELCAALSEG------GLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        17 ~s~~~a~~A~~~G----AdRIELc~~l~~G------GlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+++..|.+.|    +++|-++..++.-      |.|+.  ...+..+.+.   .+..|.  +-|  .-.+.++.+.+
T Consensus        70 ~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~--~~~~~~~~~~~  145 (268)
T cd07940          70 AVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSA--EDATRTDLDFL  145 (268)
T ss_pred             CCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--Eee--ecCCCCCHHHH
Confidence            5688899999999    9999998643211      33433  2323332222   244433  443  12233556555


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C---CCeEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D---RPITFH  130 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~---~~vtFH  130 (146)
                      ..+   ++.+.++|++.|.+.  +.-|....+.+.++++..+   +   .++-||
T Consensus       146 ~~~---~~~~~~~G~~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H  195 (268)
T cd07940         146 IEV---VEAAIEAGATTINIP--DTVGYLTPEEFGELIKKLKENVPNIKVPISVH  195 (268)
T ss_pred             HHH---HHHHHHcCCCEEEEC--CCCCCCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence            555   455567899987554  7778888888888887764   2   677777

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=83.49  E-value=12  Score=32.07  Aligned_cols=99  Identities=19%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCC------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH--------HH
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPT------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI--------MA   85 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~--------M~   85 (146)
                      .+..+.+.|++|+=|.     ||..|.      ..+++.+++.. ++.+..|           +..|+..        -.
T Consensus        87 ~a~~~~~~G~~~v~l~-----~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~-----------~~~ei~~~~~~~g~~~~  150 (351)
T TIGR03700        87 RVKEAYAPGATEVHIV-----GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAF-----------TAVEIHHFSKISGLPTE  150 (351)
T ss_pred             HHHHHHHCCCcEEEEe-----cCCCCCCCHHHHHHHHHHHHHHCCCceEEeC-----------CHHHHHHHHHHcCCCHH
Confidence            3666777899999886     566675      24666666554 3444443           2334331        12


Q ss_pred             HHHHHHHHcCCCEEE-EeeecC---------CCCcCHHHHHHHHHHhC--CCCeEEeecccC
Q psy7930          86 LDCHQFVESGADGFV-IGALTG---------EQEIDIEFIRQLKTIIG--DRPITFHRAFDV  135 (146)
Q Consensus        86 ~dI~~~~~~GadG~V-fG~L~~---------dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~  135 (146)
                      +.++.++++|+|.+- .|+=+-         .+....+..-+.++.|+  |++++-+.-|-.
T Consensus       151 e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl  212 (351)
T TIGR03700       151 EVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGH  212 (351)
T ss_pred             HHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence            347888888888665 233110         12344444334444444  677777766654

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=83.49  E-value=6.9  Score=33.60  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=45.3

Q ss_pred             HHHHHHcCCCEEEecCCCC-CCCCCCC---------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALS-EGGLTPT---------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~-~GGlTPS---------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      +..++++|++-|.+=..-. ..|++|.         +..+.++++.+ +|||..     -||=  .|.++...|.     
T Consensus       147 ~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~-----NGdI--~s~~da~~~l-----  214 (318)
T TIGR00742       147 VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEI-----NGGI--KNSEQIKQHL-----  214 (318)
T ss_pred             HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEE-----ECCc--CCHHHHHHHH-----
Confidence            6778899999998876543 4566653         45677788877 788753     3664  4445555443     


Q ss_pred             HHHcCCCEEEEe
Q psy7930          91 FVESGADGFVIG  102 (146)
Q Consensus        91 ~~~~GadG~VfG  102 (146)
                        + |+|||-+|
T Consensus       215 --~-g~dgVMig  223 (318)
T TIGR00742       215 --S-HVDGVMVG  223 (318)
T ss_pred             --h-CCCEEEEC
Confidence              2 89999997

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=83.47  E-value=4.4  Score=34.73  Aligned_cols=69  Identities=23%  Similarity=0.236  Sum_probs=50.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC-----CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL-----SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l-----~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |.|.|+|..|+++||--+=-....     ..||..-  .+..++++.+.++|||+.=  . |=|.|+           +.
T Consensus        27 V~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAK--v-RIGH~~-----------EA   92 (296)
T COG0214          27 VVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAK--V-RIGHFV-----------EA   92 (296)
T ss_pred             ecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeee--e-ecchhH-----------HH
Confidence            578999999999999655333222     5688764  6789999999999998554  4 557675           34


Q ss_pred             HHHHHcCCCE
Q psy7930          89 HQFVESGADG   98 (146)
Q Consensus        89 ~~~~~~GadG   98 (146)
                      +.+.++|+|=
T Consensus        93 ~iLealgVD~  102 (296)
T COG0214          93 QILEALGVDM  102 (296)
T ss_pred             HHHHHhCCCc
Confidence            5567788873

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases

Probab=83.38  E-value=13  Score=27.98  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=51.6

Q ss_pred             CCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEc---cCCCCCcccCHH-HHHHHHHHHHHHHHcCCCEEEEeeecCCC
Q psy7930          38 ALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIR---VRAGFDFVFSQA-EKEIMALDCHQFVESGADGFVIGALTGEQ  108 (146)
Q Consensus        38 ~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIR---P~R~gdF~Ys~~-E~~~M~~dI~~~~~~GadG~VfG~L~~dg  108 (146)
                      .+..||.||-..-++.+.+.+     .-++.++|-   | ..++...... ..+.+.+.++.+++.|+.=+++|+=++--
T Consensus        77 ~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~  155 (174)
T cd01454          77 ALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEP-NDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDAT  155 (174)
T ss_pred             ccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCc-CcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCccc
Confidence            455688899888887776654     345666663   4 3332221222 34555666888899999999999866544


Q ss_pred             CcCHHHHHHHH
Q psy7930         109 EIDIEFIRQLK  119 (146)
Q Consensus       109 ~iD~~~~~~Li  119 (146)
                      ..|.+.++++.
T Consensus       156 ~~~~~~~~~~~  166 (174)
T cd01454         156 TVDKEYLKNIF  166 (174)
T ss_pred             cchHHHHHHhh
Confidence            46666666553

Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=83.34  E-value=5.1  Score=36.87  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=64.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ..+..|.++|.|.+-+...|.. --+.++...++.+......-|..++-|      .|+.+.+..+   ++.+.++|+|.
T Consensus       101 ~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp------~~t~e~~~~~---a~~l~~~Gad~  171 (499)
T PRK12330        101 RFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSP------IHTVEGFVEQ---AKRLLDMGADS  171 (499)
T ss_pred             HHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCC------CCCHHHHHHH---HHHHHHcCCCE
Confidence            4688899999999999876643 333334333333333222334445555      3555555544   45567789997


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC-----CCCeEEee
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG-----DRPITFHR  131 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~-----~~~vtFHR  131 (146)
                      |-+-  +--|.+......+|+++.+     ++++-||-
T Consensus       172 I~Ik--DtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~  207 (499)
T PRK12330        172 ICIK--DMAALLKPQPAYDIVKGIKEACGEDTRINLHC  207 (499)
T ss_pred             EEeC--CCccCCCHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence            7553  6668888888888888764     47777774

>PLN02801 beta-amylase

Probab=83.12  E-value=4.6  Score=37.44  Aligned_cols=74  Identities=23%  Similarity=0.374  Sum_probs=52.9

Q ss_pred             hCCCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CC
Q psy7930          57 LVLVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DR  125 (146)
Q Consensus        57 ~~~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~  125 (146)
                      ...+||+||.=-   ...+.+    ..-+.+..+++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  |+
T Consensus        13 ~~~vpvyVMlPLd~V~~~~~l----~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GL   88 (517)
T PLN02801         13 ANYVPVYVMLPLGVVTADNVL----EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGL   88 (517)
T ss_pred             CCceeEEEeeecceecCCCcc----CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCC
Confidence            346999999854   012221    23457889999999999999987    66653  67899999999999987  56


Q ss_pred             CeEEeeccc
Q psy7930         126 PITFHRAFD  134 (146)
Q Consensus       126 ~vtFHRAFD  134 (146)
                      ++--=+.|-
T Consensus        89 Klq~vmSFH   97 (517)
T PLN02801         89 KIQAIMSFH   97 (517)
T ss_pred             eEEEEEEec
Confidence            653333343

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=83.00  E-value=5  Score=37.67  Aligned_cols=100  Identities=16%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             HHHHHHHcCCCEEEecCCCC-CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          21 SALAAVRGGADRLELCAALS-EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~-~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      -+..|.+.|.|.+=..++|- .--+.++...+++.-..+..-|.-|+-      -.||.+.+..+.+.   +.++|+|.|
T Consensus       101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~s------p~~t~e~~~~~ak~---l~~~Gad~I  171 (596)
T PRK14042        101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTS------PVHTLDNFLELGKK---LAEMGCDSI  171 (596)
T ss_pred             HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCC------CCCCHHHHHHHHHH---HHHcCCCEE
Confidence            56779999999999998763 334445444443322222222333443      48888888776655   556899966


Q ss_pred             EEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930         100 VIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus       100 VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      .+  =+.-|.....+..+|+.+.+   ++++-||-
T Consensus       172 ~I--kDtaG~l~P~~v~~lv~alk~~~~ipi~~H~  204 (596)
T PRK14042        172 AI--KDMAGLLTPTVTVELYAGLKQATGLPVHLHS  204 (596)
T ss_pred             Ee--CCcccCCCHHHHHHHHHHHHhhcCCEEEEEe
Confidence            54  46678888889999988876   57888884

>PRK07360 FO synthase subunit 2; Reviewed

Probab=82.98  E-value=13  Score=32.34  Aligned_cols=65  Identities=25%  Similarity=0.336  Sum_probs=40.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHH-------HHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH--------
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLG-------LYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI--------   83 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g-------~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~--------   83 (146)
                      +.|..|.+.|+.|+-|.     ||..|+..       +++.+++.. ++.++           .+|..|+..        
T Consensus        98 ~~a~~a~~~G~~~i~l~-----~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~-----------a~s~~ei~~~~~~~G~~  161 (371)
T PRK07360         98 EKAAEAVKRGATEVCIQ-----GGLHPAADSLEFYLEILEAIKEEFPDIHLH-----------AFSPMEVYFAAREDGLS  161 (371)
T ss_pred             HHHHHHHhCCCCEEEEc-----cCCCCCCCcHHHHHHHHHHHHHhCCCccee-----------eCCHHHHHHHHhhcCCC
Confidence            44567888899999998     46666543       444444422 22222           234545432        


Q ss_pred             HHHHHHHHHHcCCCEEE
Q psy7930          84 MALDCHQFVESGADGFV  100 (146)
Q Consensus        84 M~~dI~~~~~~GadG~V  100 (146)
                      .++.++.++++|+|.+-
T Consensus       162 ~~e~l~~LkeAGld~~~  178 (371)
T PRK07360        162 YEEVLKALKDAGLDSMP  178 (371)
T ss_pred             HHHHHHHHHHcCCCcCC
Confidence            23568999999999984

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=82.90  E-value=3.2  Score=32.88  Aligned_cols=52  Identities=23%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             ceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcE
Q psy7930          10 TTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPV   62 (146)
Q Consensus        10 ~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv   62 (146)
                      +++|.+-.+.+.    ++.|.+.|||-|-...+...+|.||. ...|.++.+ .++||
T Consensus       121 vI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~i  177 (203)
T cd00959         121 VILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGV  177 (203)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceE
Confidence            478888887544    67788999999999988887887774 355555544 33444

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=82.80  E-value=6.9  Score=30.69  Aligned_cols=69  Identities=29%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc-CC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES-GA   96 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~-Ga   96 (146)
                      +-+....+.|++-|.+-..-..++..  +....++.+++..++||.+     -|| .. |.+       |+..+.+. |+
T Consensus       142 ~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~-----~Gg-i~-~~~-------d~~~~l~~~ga  207 (231)
T cd02801         142 ELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA-----NGD-IF-SLE-------DALRCLEQTGV  207 (231)
T ss_pred             HHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEE-----eCC-CC-CHH-------HHHHHHHhcCC
Confidence            33456677899999886543222222  4677888888888888765     233 22 333       34444444 89


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |+|.+|
T Consensus       208 d~V~ig  213 (231)
T cd02801         208 DGVMIG  213 (231)
T ss_pred             CEEEEc
Confidence            999999

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=82.63  E-value=25  Score=28.76  Aligned_cols=109  Identities=9%  Similarity=-0.023  Sum_probs=67.3

Q ss_pred             ceeEEEecCHHHHHHHHHc-CCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCCcccCHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRG-GADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFDFVFSQAEKEIMALD   87 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~-GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gdF~Ys~~E~~~M~~d   87 (146)
                      +..-+...+.+++.+..+. |||=||+--.+-..-. +.  ..+ +.+....|+.+=+||+. ||.|..+++|...+...
T Consensus         5 i~vpi~~~~~e~i~~~~~~~~aD~vE~RlD~l~~~~-~~--~~~-~l~~~~~plI~T~R~~~EGG~~~~~~~~r~~ll~~   80 (216)
T PRK13576          5 IVASLPIKKIEDLKLIGNFLDADLIELRLDYLKDRE-VS--VIE-FLDKYKDKLIVTLRDKAEGGINELDDELKISLLKE   80 (216)
T ss_pred             EEEEeCCCCHHHHHHHHhcCCCCEEEEEeccccccc-hh--HHH-HHHhcCCCEEEEeCChHHCCCCcCCHHHHHHHHHH
Confidence            4455666778888888888 9999999876554322 21  233 33445679999999833 56788888877666543


Q ss_pred             HHH-----------HHHcCCC--EEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          88 CHQ-----------FVESGAD--GFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        88 I~~-----------~~~~Gad--G~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      +..           +.+.+..  .+++-.=+=+++-+.+.+.++++..
T Consensus        81 ~~~~~~~vDiE~~~a~~~~~~~~~vI~S~HdF~~TP~~~eL~~~l~~m  128 (216)
T PRK13576         81 LYDKQFLYDVEASFLQKYNVPYDNKIVSIHYFDYLPTSEEVKEIVSKF  128 (216)
T ss_pred             HHHhCCeEEEEcchhhhcCCCCCeEEEEECCCCCCcCHHHHHHHHHHH
Confidence            322           2222222  2444444445666776666666554

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=82.56  E-value=24  Score=28.55  Aligned_cols=104  Identities=12%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +-|++++....+.||+|+=|.+..     -.+ .+++++.+..+- .+.+-|=. +.|... ......-..+=++.+.+.
T Consensus        87 ir~~edv~~~l~~Ga~~viigt~~-----~~~-~~~~~~~~~~~~~~iivslD~-~~~~~~-~~~~~~~~~~~~~~~~~~  158 (233)
T cd04723          87 IRSLENAQEWLKRGASRVIVGTET-----LPS-DDDEDRLAALGEQRLVLSLDF-RGGQLL-KPTDFIGPEELLRRLAKW  158 (233)
T ss_pred             cCCHHHHHHHHHcCCCeEEEccee-----ccc-hHHHHHHHhcCCCCeEEEEec-cCCeec-cccCcCCHHHHHHHHHHh
Confidence            568899999999999999876531     124 788888887754 67788877 666332 111111123336677788


Q ss_pred             CCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          95 GADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        95 GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                       ++.+++=-++.+|+   .|.+.++++.+.. ++|++.
T Consensus       159 -~~~li~~di~~~G~~~g~~~~~~~~i~~~~-~ipvi~  194 (233)
T cd04723         159 -PEELIVLDIDRVGSGQGPDLELLERLAARA-DIPVIA  194 (233)
T ss_pred             -CCeEEEEEcCccccCCCcCHHHHHHHHHhc-CCCEEE
Confidence             99999999988874   7899998888864 455554

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=82.48  E-value=2.5  Score=38.58  Aligned_cols=66  Identities=27%  Similarity=0.264  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+..+++.|||+|=||+  ..|.+||.  ..+++.+++..++||.+.--- ..|        +..  .-...+.++|||
T Consensus       167 ~~a~~l~~~Gad~I~IkD--taG~l~P~~v~~Lv~alk~~~~~pi~~H~Hn-t~G--------lA~--An~laAieAGad  233 (468)
T PRK12581        167 SLVKELVEMGADSICIKD--MAGILTPKAAKELVSGIKAMTNLPLIVHTHA-TSG--------ISQ--MTYLAAVEAGAD  233 (468)
T ss_pred             HHHHHHHHcCCCEEEECC--CCCCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCc--------cHH--HHHHHHHHcCCC
Confidence            447778899999999999  47999994  778999988778898876555 333        111  334455678887


Q ss_pred             E
Q psy7930          98 G   98 (146)
Q Consensus        98 G   98 (146)
                      .
T Consensus       234 ~  234 (468)
T PRK12581        234 R  234 (468)
T ss_pred             E
Confidence            4

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=82.47  E-value=29  Score=29.39  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh------CCCcEEEEEccCCC---------CCcccCHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL------VLVPVFVMIRVRAG---------FDFVFSQAEK   81 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~------~~ipv~vMIRP~R~---------gdF~Ys~~E~   81 (146)
                      .+++.+..|.++|.+-|-+=..     ..|....++.+++.      .++||-.=+=. =|         |..+++.+|.
T Consensus        85 ~~~e~i~~Al~~G~tsVm~d~s-----~~~~~eni~~t~~v~~~a~~~gv~veaE~gh-lG~~d~~~~~~g~s~t~~eea  158 (281)
T PRK06806         85 MTFEKIKEALEIGFTSVMFDGS-----HLPLEENIQKTKEIVELAKQYGATVEAEIGR-VGGSEDGSEDIEMLLTSTTEA  158 (281)
T ss_pred             CCHHHHHHHHHcCCCEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCeEEEEeee-ECCccCCcccccceeCCHHHH
Confidence            4789999999999999988743     12555666555542      36776543322 22         3334455554


Q ss_pred             HHHHHHHHHHHHcCCCEEEE--eeecC----CCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930          82 EIMALDCHQFVESGADGFVI--GALTG----EQEIDIEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~Vf--G~L~~----dg~iD~~~~~~Li~~a~~~~vtFHR  131 (146)
                      ..-.      ++.|+|-+-|  |-...    .-.+|.+.++++.+.. ++|++.|=
T Consensus       159 ~~f~------~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~-~iPlV~hG  207 (281)
T PRK06806        159 KRFA------EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV-HIPLVLHG  207 (281)
T ss_pred             HHHH------HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc-CCCEEEEC
Confidence            3322      3469996666  55532    2359999999999876 69999995

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=82.40  E-value=10  Score=33.06  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCC----------CC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGL----------TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      .+.++|..+.+.|||-|-..-  ..|+.          .|  ....+.++++..++||..      .|+..|+       
T Consensus       146 ~t~e~a~~l~~aGad~I~V~~--G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIa------dGGIr~~-------  210 (321)
T TIGR01306       146 GTPEAVRELENAGADATKVGI--GPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA------DGGIRTH-------  210 (321)
T ss_pred             CCHHHHHHHHHcCcCEEEECC--CCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEE------ECCcCcH-------
Confidence            489999999999999987541  11221          23  445677777777877543      3446666       


Q ss_pred             HHHHHHHHHcCCCEEEEeeec
Q psy7930          85 ALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~  105 (146)
                       .||..+..+|||.+-+|-+=
T Consensus       211 -~Di~KALa~GAd~Vmig~~~  230 (321)
T TIGR01306       211 -GDIAKSIRFGASMVMIGSLF  230 (321)
T ss_pred             -HHHHHHHHcCCCEEeechhh
Confidence             78899999999999999663

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=82.17  E-value=17  Score=28.17  Aligned_cols=86  Identities=24%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+.+..+.+.|+|-+-+-......... ++...++++++....+   -|-+ -||-   +.       +.+..+.+.|++
T Consensus       116 ~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~---~i~v-~GGI---~~-------~n~~~~~~~Ga~  181 (206)
T TIGR03128       116 VKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA---RVAV-AGGI---NL-------DTIPDVIKLGPD  181 (206)
T ss_pred             HHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC---cEEE-ECCc---CH-------HHHHHHHHcCCC
Confidence            588899999999999664322111111 3566777777766543   2344 4553   32       446678899999


Q ss_pred             EEEEe-eecCCCCcCHHHHHHHH
Q psy7930          98 GFVIG-ALTGEQEIDIEFIRQLK  119 (146)
Q Consensus        98 G~VfG-~L~~dg~iD~~~~~~Li  119 (146)
                      +|++| .|..... =.+.+++|.
T Consensus       182 ~v~vGsai~~~~d-~~~~~~~l~  203 (206)
T TIGR03128       182 IVIVGGAITKAAD-PAEAARQIR  203 (206)
T ss_pred             EEEEeehhcCCCC-HHHHHHHHH
Confidence            99995 4444322 134444443

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=82.04  E-value=14  Score=30.22  Aligned_cols=41  Identities=12%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                      +.+++-++.+++.|. -+.|++ ...+..|.+.+.++++.+..
T Consensus       110 ~~~~~~i~~a~~~G~-~v~~~~-~~~~~~~~~~~~~~~~~~~~  150 (259)
T cd07939         110 DQLRRLVGRAKDRGL-FVSVGA-EDASRADPDFLIEFAEVAQE  150 (259)
T ss_pred             HHHHHHHHHHHHCCC-eEEEee-ccCCCCCHHHHHHHHHHHHH
Confidence            455566667777775 356665 33445777777777766543

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=81.90  E-value=5.8  Score=33.86  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=67.7

Q ss_pred             EEecCHHHHHH----HHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          14 VCVDSVASALA----AVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        14 vcv~s~~~a~~----A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +-+.|++.+++    |++.++-=|=-.+.  +...|+.+-..+++.+.+..++||.+.+=-  +.+|           +.
T Consensus        23 fN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH--g~~~-----------e~   89 (284)
T PRK09195         23 FNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH--HEKF-----------DD   89 (284)
T ss_pred             EEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC--CCCH-----------HH
Confidence            44566666654    55556665544432  233555555666777777789998877755  6655           56


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCC
Q psy7930          88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRP  126 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~  126 (146)
                      |..+.++|.+.|-|=.=.-+.+=+...++++++.|+...
T Consensus        90 i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~g  128 (284)
T PRK09195         90 IAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFD  128 (284)
T ss_pred             HHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            888889999999886544445567888999999998544

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=81.84  E-value=9.6  Score=31.71  Aligned_cols=91  Identities=29%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             EecCHHHHHHHHH-cCCCEEEecCCCCCC--CCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVR-GGADRLELCAALSEG--GLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        15 cv~s~~~a~~A~~-~GAdRIELc~~l~~G--GlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ++.++++...=.+ .|.|-+.+=.+...-  |.+||.+.+..+++..+  ++|-|     -|| -         =.+++.
T Consensus       115 ~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV-----aGG-I---------~~~~i~  179 (217)
T COG0269         115 GVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV-----AGG-I---------TPEDIP  179 (217)
T ss_pred             cCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccCceEEE-----ecC-C---------CHHHHH
Confidence            4566777777666 999999999887666  99999999999988765  34433     233 1         127899


Q ss_pred             HHHHcCCCEEEEe-eecCCCCcC-HHHHHHHHHHh
Q psy7930          90 QFVESGADGFVIG-ALTGEQEID-IEFIRQLKTII  122 (146)
Q Consensus        90 ~~~~~GadG~VfG-~L~~dg~iD-~~~~~~Li~~a  122 (146)
                      .++..|++-||+| ++|.  .=| .++.+++.+..
T Consensus       180 ~~~~~~~~ivIvGraIt~--a~dp~~~a~~~~~~i  212 (217)
T COG0269         180 LFKGIGADIVIVGRAITG--AKDPAEAARKFKEEI  212 (217)
T ss_pred             HHhcCCCCEEEECchhcC--CCCHHHHHHHHHHHH
Confidence            9999999999998 3443  345 44555555544

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=81.71  E-value=15  Score=30.31  Aligned_cols=81  Identities=11%  Similarity=-0.024  Sum_probs=49.8

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHh---hCCCcEE-EEE-ccCCCCCcccCHHH-----HHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKR---LVLVPVF-VMI-RVRAGFDFVFSQAE-----KEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~---~~~ipv~-vMI-RP~R~gdF~Ys~~E-----~~~M~~d   87 (146)
                      ..+..|.+.|++-+||-..=..+-..|  +....+..++   ..++.+. +.+ -| -.=+..-.+.+     ++.|++.
T Consensus        15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hap-y~iNlas~~~~~r~~sv~~~~~~   93 (274)
T TIGR00587        15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAP-YLINLASPDEEKEEKSLDVLDEE   93 (274)
T ss_pred             HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCC-eeeecCCCCHHHHHHHHHHHHHH
Confidence            346778999999999987655555555  3444444443   4444421 111 12 00111111333     7889999


Q ss_pred             HHHHHHcCCCEEEE
Q psy7930          88 CHQFVESGADGFVI  101 (146)
Q Consensus        88 I~~~~~~GadG~Vf  101 (146)
                      |+.++++||+.+|+
T Consensus        94 i~~A~~lga~~vv~  107 (274)
T TIGR00587        94 LKRCELLGIMLYNF  107 (274)
T ss_pred             HHHHHHcCCCEEEE
Confidence            99999999999887

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09389 (R)-citramalate synthase; Provisional

Probab=81.70  E-value=14  Score=33.67  Aligned_cols=64  Identities=28%  Similarity=0.421  Sum_probs=43.4

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      -+..+.+.||+||-||+  ..|.+||.  ..+++.+++..++|+-+----         +-.+..  .-...+.++||+
T Consensus       148 ~~~~~~~~Ga~~i~l~D--TvG~~~P~~~~~lv~~l~~~~~v~l~~H~HN---------D~GlAv--ANalaAv~aGa~  213 (488)
T PRK09389        148 LYKAGIEAGADRICFCD--TVGILTPEKTYELFKRLSELVKGPVSIHCHN---------DFGLAV--ANTLAALAAGAD  213 (488)
T ss_pred             HHHHHHhCCCCEEEEec--CCCCcCHHHHHHHHHHHHhhcCCeEEEEecC---------CccHHH--HHHHHHHHcCCC
Confidence            34667889999999999  47999995  667888877777666443322         223332  344555678886

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=81.70  E-value=7.7  Score=34.18  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHcCCCEEEecCCC---CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          18 SVASALAAVRGGADRLELCAAL---SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l---~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      ..+-+..+++.|+|-|.+-..-   .-++-.+....+.+.++..++||.+       |+ +.|.+       +.+.+.+.
T Consensus       143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-------G~-V~t~e-------~A~~l~~a  207 (368)
T PRK08649        143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-------GG-CVTYT-------TALHLMRT  207 (368)
T ss_pred             HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-------eC-CCCHH-------HHHHHHHc
Confidence            4577888999999999996421   2233333445566666667889843       32 56654       44555568


Q ss_pred             CCCEEEEee
Q psy7930          95 GADGFVIGA  103 (146)
Q Consensus        95 GadG~VfG~  103 (146)
                      |||+|.+|.
T Consensus       208 GAD~V~VG~  216 (368)
T PRK08649        208 GAAGVLVGI  216 (368)
T ss_pred             CCCEEEECC
Confidence            999999993

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=81.55  E-value=9.1  Score=33.86  Aligned_cols=68  Identities=22%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             HHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          19 VASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .+-+..++++|||-|.+-...    ...|- .....+.+.++..++||.+       |+ +.|.++       +..+.+.
T Consensus       145 ~e~a~~l~eAGad~I~ihgrt~~q~~~sg~-~~p~~l~~~i~~~~IPVI~-------G~-V~t~e~-------A~~~~~a  208 (369)
T TIGR01304       145 REIAPIVVKAGADLLVIQGTLVSAEHVSTS-GEPLNLKEFIGELDVPVIA-------GG-VNDYTT-------ALHLMRT  208 (369)
T ss_pred             HHHHHHHHHCCCCEEEEeccchhhhccCCC-CCHHHHHHHHHHCCCCEEE-------eC-CCCHHH-------HHHHHHc
Confidence            466788999999999986322    22232 2244566667778899853       22 666544       4455568


Q ss_pred             CCCEEEEe
Q psy7930          95 GADGFVIG  102 (146)
Q Consensus        95 GadG~VfG  102 (146)
                      |+|+|++|
T Consensus       209 GaDgV~~G  216 (369)
T TIGR01304       209 GAAGVIVG  216 (369)
T ss_pred             CCCEEEEC
Confidence            99999977

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=81.52  E-value=28  Score=28.52  Aligned_cols=95  Identities=11%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             cCHHHHHHH-HHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAA-VRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A-~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .++.+.... .+.||+++-+.+ +-.. |-.|...+++++.+....|+.+      ||+.. |       .+|++.+.+.
T Consensus        30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~~~i~~i~~~~~~~v~v------GGGIr-s-------~e~~~~~l~~   94 (232)
T PRK13586         30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNEMYIKEISKIGFDWIQV------GGGIR-D-------IEKAKRLLSL   94 (232)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcchHHHHHHHHhhCCCCEEE------eCCcC-C-------HHHHHHHHHC
Confidence            466555444 457999999886 2123 6778889999998844347654      33322 1       1678888899


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      |++-+|+|-.+-   -|.+.++++.+.-++-.+++
T Consensus        95 Ga~kvvigt~a~---~~p~~~~~~~~~~g~~~ivv  126 (232)
T PRK13586         95 DVNALVFSTIVF---TNFNLFHDIVREIGSNRVLV  126 (232)
T ss_pred             CCCEEEECchhh---CCHHHHHHHHHHhCCCCEEE
Confidence            999999986553   36788888888876555554

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=81.50  E-value=5.6  Score=36.35  Aligned_cols=97  Identities=18%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +..|.+.|.|.+=..+.|-.  .--....++.+++   .+..-+..++-|      .|+   ++-..+-++.+.++|+|.
T Consensus       111 v~~a~~~Gidi~Rifd~lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp------~~t---~~y~~~~a~~l~~~Gad~  179 (468)
T PRK12581        111 ISLSAQNGIDVFRIFDALND--PRNIQQALRAVKKTGKEAQLCIAYTTSP------VHT---LNYYLSLVKELVEMGADS  179 (468)
T ss_pred             HHHHHHCCCCEEEEcccCCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC------cCc---HHHHHHHHHHHHHcCCCE
Confidence            77789999999999886541  1111223333333   122334444445      233   333444556667899997


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      |.+-  +.-|.+....+.+|+++.+   ++++-||-
T Consensus       180 I~Ik--DtaG~l~P~~v~~Lv~alk~~~~~pi~~H~  213 (468)
T PRK12581        180 ICIK--DMAGILTPKAAKELVSGIKAMTNLPLIVHT  213 (468)
T ss_pred             EEEC--CCCCCcCHHHHHHHHHHHHhccCCeEEEEe
Confidence            6653  6678888889999988876   47788883

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=81.44  E-value=24  Score=33.01  Aligned_cols=96  Identities=21%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC----------HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT----------LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS----------~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      +....+.|.+.||.-     ||.|-.          ...++.+++.. ++++..+.|.  ..-.-|....-++++.+++.
T Consensus        27 a~~L~~~Gv~~IE~~-----GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg--~N~~G~~~ypddvv~~~v~~   99 (582)
T TIGR01108        27 AEKLDDVGYWSLEVW-----GGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRG--QNLLGYRHYADDVVERFVKK   99 (582)
T ss_pred             HHHHHHcCCCEEEec-----CCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEcc--ccccccccCchhhHHHHHHH
Confidence            344566799999995     343321          44677777644 6899999985  22234666677788899999


Q ss_pred             HHHcCCCEEEEe-eecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          91 FVESGADGFVIG-ALTGEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        91 ~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      +.+.|+|-|-+- .++     |...++..++.|+  |+.+.+
T Consensus       100 a~~~Gvd~irif~~ln-----d~~n~~~~i~~ak~~G~~v~~  136 (582)
T TIGR01108       100 AVENGMDVFRIFDALN-----DPRNLQAAIQAAKKHGAHAQG  136 (582)
T ss_pred             HHHCCCCEEEEEEecC-----cHHHHHHHHHHHHHcCCEEEE
Confidence            999999976554 333     2467888888887  554443

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=81.44  E-value=12  Score=31.81  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=53.5

Q ss_pred             eEEEecCHHHHHHHHH-cCCCEEEecCCCCCCCCC---C--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVR-GGADRLELCAALSEGGLT---P--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~-~GAdRIELc~~l~~GGlT---P--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +..-+.|++++..+.+ .|+|-+-+--.-..| +.   |  .+..++++++.+++|+ |+|    ||+= -+       .
T Consensus       148 ~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg-~~~~~~~l~~~~L~~i~~~~~iPl-V~h----G~SG-I~-------~  213 (281)
T PRK06806        148 IEMLLTSTTEAKRFAEETDVDALAVAIGNAHG-MYNGDPNLRFDRLQEINDVVHIPL-VLH----GGSG-IS-------P  213 (281)
T ss_pred             ccceeCCHHHHHHHHHhhCCCEEEEccCCCCC-CCCCCCccCHHHHHHHHHhcCCCE-EEE----CCCC-CC-------H
Confidence            3556789999999875 599999883221122 22   2  5778999999999997 444    4220 11       2


Q ss_pred             HHHHHHHHcCCCEEEEe
Q psy7930          86 LDCHQFVESGADGFVIG  102 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG  102 (146)
                      +++..+.+.|+++|-++
T Consensus       214 e~~~~~i~~G~~kinv~  230 (281)
T PRK06806        214 EDFKKCIQHGIRKINVA  230 (281)
T ss_pred             HHHHHHHHcCCcEEEEh
Confidence            66788899999999765

>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX

Probab=81.41  E-value=1.2  Score=38.33  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEee--ecCCCCcCHHHHHHHHHHhC-CCCeEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIGA--LTGEQEIDIEFIRQLKTIIG-DRPITFH  130 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG~--L~~dg~iD~~~~~~Li~~a~-~~~vtFH  130 (146)
                      .|+..+-++|+..+++++++|++||+|=-  -+...-++.. ++.+++.-+ +++..|-
T Consensus        51 yYdl~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~gk~lLe~p-~~~~l~~~~~d~pFcl~  108 (345)
T PF14307_consen   51 YYDLRDPEVMEKQAELAKEYGIDGFCFYHYWFNGKRLLEKP-LENLLASKEPDFPFCLC  108 (345)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCEEEEEeeecCCchHHHHH-HHHHHhcCCCCCcEEEE
Confidence            46778999999999999999999999962  2222234433 355663222 5666663

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=81.32  E-value=33  Score=29.39  Aligned_cols=98  Identities=19%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             HHHHHHcCCCEEEe--------cCCCCCCCCCCCHHHHHHHHhhC----CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLEL--------CAALSEGGLTPTLGLYRVIKRLV----LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        22 a~~A~~~GAdRIEL--------c~~l~~GGlTPS~g~i~~~~~~~----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +...++.||-=|-+        |..+.-..+-|.-..+++++...    +.+..++-|- -.  |.  ...++.-.+=.+
T Consensus        99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART-Da--~~--~~g~deAI~Ra~  173 (292)
T PRK11320         99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART-DA--LA--VEGLDAAIERAQ  173 (292)
T ss_pred             HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec-Cc--cc--ccCHHHHHHHHH
Confidence            56678889977766        44444334566666666655432    5677777775 11  21  122444445588


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEe
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFH  130 (146)
                      .++++|||++-+-.++     +.+.++++.+..+ .|+.+.
T Consensus       174 aY~eAGAD~ifi~~~~-----~~~~i~~~~~~~~-~Pl~~n  208 (292)
T PRK11320        174 AYVEAGADMIFPEAMT-----ELEMYRRFADAVK-VPILAN  208 (292)
T ss_pred             HHHHcCCCEEEecCCC-----CHHHHHHHHHhcC-CCEEEE
Confidence            8999999999886554     6888888888663 565443

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=81.08  E-value=27  Score=28.09  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             EEecCHHHHHHHH---HcCCCEEEecCCCCCCCCCCC--HHHHHHHHhh-CCCcEEEEEccC-CCCCcccCHHHHHHHHH
Q psy7930          14 VCVDSVASALAAV---RGGADRLELCAALSEGGLTPT--LGLYRVIKRL-VLVPVFVMIRVR-AGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        14 vcv~s~~~a~~A~---~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~   86 (146)
                      +.-.+.+++....   ..|||=|||.-.+-..-..+.  ..+.+++... .++|+.+-+|++ .||.|..++++.-.+. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll-   84 (228)
T TIGR01093         6 LTAPDLEEALATAEKICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEEL-   84 (228)
T ss_pred             ccCCCHHHHHHHHHHhccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH-
Confidence            3345555544333   479999999976632211111  1233333321 378999999972 4678888877654443 


Q ss_pred             HHHHH-HHcCCCEEEEeeecCCCCcCHHHHHHHHHHh--CCCCeEEee-cccCCCC
Q psy7930          87 DCHQF-VESGADGFVIGALTGEQEIDIEFIRQLKTII--GDRPITFHR-AFDVVRE  138 (146)
Q Consensus        87 dI~~~-~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a--~~~~vtFHR-AFD~~~d  138 (146)
                        ..+ ...|+|-+-+=.     ..+.+.+++|++.+  ++..+..+. =|+.+++
T Consensus        85 --~~~~~~~~~d~vDiEl-----~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~  133 (228)
T TIGR01093        85 --KRAADSPGPDFVDIEL-----FLPDDAVKELINIAKKGGTKIIMSYHDFQKTPS  133 (228)
T ss_pred             --HHHHHhCCCCEEEEEc-----cCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCC
Confidence              333 556777776653     34566788888844  355544333 4555543

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=81.03  E-value=18  Score=32.74  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=58.8

Q ss_pred             HHHHHcCCCEEEecCCCCCCCC---------CC-CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          23 LAAVRGGADRLELCAALSEGGL---------TP-TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGl---------TP-S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      ..-.+.|.++||.-     ||.         .| ....++.+++. .++++..+.|. . .-.-|+..-=+.++.||+.+
T Consensus        33 ~~Ld~~Gv~~IE~~-----ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~-~-N~~G~~~~pddvv~~~v~~A  105 (448)
T PRK12331         33 EKLDNAGYHSLEMW-----GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRG-Q-NLLGYRNYADDVVESFVQKS  105 (448)
T ss_pred             HHHHHcCCCEEEec-----CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecc-c-cccccccCchhhHHHHHHHH
Confidence            34566799999994     443         22 24567777766 36888888986 2 22334444445677899999


Q ss_pred             HHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          92 VESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      .+.|+|-|-+-.  +=+  |...+++.++.|+
T Consensus       106 ~~~Gvd~irif~--~ln--d~~n~~~~v~~ak  133 (448)
T PRK12331        106 VENGIDIIRIFD--ALN--DVRNLETAVKATK  133 (448)
T ss_pred             HHCCCCEEEEEE--ecC--cHHHHHHHHHHHH
Confidence            999999654443  222  2236888888887

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=81.02  E-value=16  Score=31.75  Aligned_cols=45  Identities=31%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEcc
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRV   68 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP   68 (146)
                      +..+.+.|++||-||+.  .|.+||.  ..+++.+++..++|+.+----
T Consensus       147 ~~~~~~~g~~~i~l~DT--~G~~~P~~v~~li~~l~~~~~~~l~~H~Hn  193 (363)
T TIGR02090       147 FKRAEEAGADRINIADT--VGVLTPQKMEELIKKLKENVKLPISVHCHN  193 (363)
T ss_pred             HHHHHhCCCCEEEEeCC--CCccCHHHHHHHHHHHhcccCceEEEEecC
Confidence            45678899999999995  6999995  677888887776666554433

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=81.02  E-value=11  Score=30.76  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      ++.+=+..+++.|+|-|-.- +...| ....+..+++++  .++||..     -||  +.|.+       |+..+.+.|+
T Consensus       153 ~~~~la~~l~~aG~d~ihv~-~~~~g-~~ad~~~I~~i~--~~ipVIg-----nGg--I~s~e-------da~~~l~~Ga  214 (233)
T cd02911         153 DDEELARLIEKAGADIIHVD-AMDPG-NHADLKKIRDIS--TELFIIG-----NNS--VTTIE-------SAKEMFSYGA  214 (233)
T ss_pred             CHHHHHHHHHHhCCCEEEEC-cCCCC-CCCcHHHHHHhc--CCCEEEE-----ECC--cCCHH-------HHHHHHHcCC
Confidence            45666788899999987663 32333 345677777765  5677632     255  33443       4444445699


Q ss_pred             CEEEEee
Q psy7930          97 DGFVIGA  103 (146)
Q Consensus        97 dG~VfG~  103 (146)
                      |||-+|=
T Consensus       215 D~VmiGR  221 (233)
T cd02911         215 DMVSVAR  221 (233)
T ss_pred             CEEEEcC
Confidence            9999993

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=81.01  E-value=17  Score=33.20  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=70.5

Q ss_pred             cceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-CCCcccCHHHHHH
Q psy7930           9 KTTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-GFDFVFSQAEKEI   83 (146)
Q Consensus         9 ~~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-~gdF~Ys~~E~~~   83 (146)
                      ++.+.+.-.+.++    +..+...|+|=|||.-.+-..- . ....+..+.+..++|+.+=+|+++ ||.|..++++...
T Consensus        24 ~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~-~-~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~~~~~~~  101 (529)
T PLN02520         24 LICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNF-N-PREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQD  101 (529)
T ss_pred             EEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEecccccc-C-CHHHHHHHHhcCCCcEEEEeccHHHCCCCCCCHHHHHH
Confidence            3444555455555    4455567999999998765432 2 234455556667899999999833 6778888877554


Q ss_pred             HHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEeecccCCCC
Q psy7930          84 MALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFHRAFDVVRE  138 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFHRAFD~~~d  138 (146)
                      +   ++.+.+.|+|-+=+=     -..+. .+.+++..++  +.+  +.+|- |+.+++
T Consensus       102 l---l~~~~~~~~d~iDiE-----l~~~~-~~~~~~~~~~~~~~~vI~S~H~-f~~tP~  150 (529)
T PLN02520        102 A---LRLAMELGADYVDVE-----LKVAH-EFINSISGKKPEKCKVIVSSHN-YENTPS  150 (529)
T ss_pred             H---HHHHHHhCCCEEEEE-----cCCch-hHHHHHHhhhhcCCEEEEEecC-CCCCCC
Confidence            4   344556676654442     11222 4456666665  333  45664 666654

>PLN02161 beta-amylase

Probab=80.85  E-value=6.7  Score=36.51  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             CCcEEEEEccC---CCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRVR---AGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP~---R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||.=--   .+++=+=.=...+.|..+++.+|++|+|||.+    |+.-.  .++.|...=++|.+.++  ++++
T Consensus        91 ~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl  170 (531)
T PLN02161         91 RVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKL  170 (531)
T ss_pred             CeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence            69999998540   11100001145678999999999999999987    66653  57899999999999997  5554


Q ss_pred             EEeecccC
Q psy7930         128 TFHRAFDV  135 (146)
Q Consensus       128 tFHRAFD~  135 (146)
                      .-=+.|-+
T Consensus       171 q~vmSFHq  178 (531)
T PLN02161        171 HVALCFHS  178 (531)
T ss_pred             EEEEEecc
Confidence            43334433

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=80.82  E-value=31  Score=28.60  Aligned_cols=95  Identities=19%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC-------CCC--cccCHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA-------GFD--FVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R-------~gd--F~Ys~~E~~~M~~dI~~   90 (146)
                      ..+...++.||+=|-|=+.     .. -...++.+++. .+||..-+-- .       +|+  |-=+..+++.+.++.+.
T Consensus        93 ~~~~~l~~aGa~gv~iED~-----~~-~~~~i~ai~~a-~i~ViaRtd~-~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~a  164 (240)
T cd06556          93 ELAKTFMRAGAAGVKIEGG-----EW-HIETLQMLTAA-AVPVIAHTGL-TPQSVNTSGGDEGQYRGDEAGEQLIADALA  164 (240)
T ss_pred             HHHHHHHHcCCcEEEEcCc-----HH-HHHHHHHHHHc-CCeEEEEeCC-chhhhhccCCceeeccCHHHHHHHHHHHHH
Confidence            3466677889988877542     10 12234444433 4554433221 1       111  22246789999999999


Q ss_pred             HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          91 FVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      +.++|||++++=     +. |.+..+++.+.. +.|+.+
T Consensus       165 y~~AGAd~i~~e-----~~-~~e~~~~i~~~~-~~P~~~  196 (240)
T cd06556         165 YAPAGADLIVME-----CV-PVELAKQITEAL-AIPLAG  196 (240)
T ss_pred             HHHcCCCEEEEc-----CC-CHHHHHHHHHhC-CCCEEE
Confidence            999999999983     33 888888888864 355544

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=80.65  E-value=33  Score=28.88  Aligned_cols=107  Identities=20%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecC---C-C-CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCA---A-L-SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~---~-l-~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ++.++.-.|...||+.|-.+.   . + .+|=++|..+-+-..|+.+  ++.|..=|++ ..+... .+..++...+|  
T Consensus        91 d~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~-kh~~~l-~~~~~~~~~~~--  166 (254)
T PF03437_consen   91 DPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHV-KHSSPL-ATRDLEEAAKD--  166 (254)
T ss_pred             CCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeech-hhcccC-CCCCHHHHHHH--
Confidence            556778889999999988553   2 2 2344566666666666655  4677777889 444333 33345543333  


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      .+...++||+++.=-.-....|.+.+++..+.+. +|+-
T Consensus       167 a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVl  204 (254)
T PF03437_consen  167 AVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVL  204 (254)
T ss_pred             HHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEE
Confidence            2255799999886655566789999999888887 6654

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK05985 cytosine deaminase; Provisional

Probab=80.63  E-value=9.8  Score=32.54  Aligned_cols=103  Identities=17%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             HHHHHHHHcCCCEE-EecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          20 ASALAAVRGGADRL-ELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        20 ~~a~~A~~~GAdRI-ELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      ..+..+.++|..-+ +-+.-...-|++- .+-+.++++..  .+.+.++-.| ..|-|.+...+     +.++...+.|+
T Consensus       102 ~~~~~~l~~G~t~vr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~-~~g~~~~~~~~-----~ll~~~l~~g~  174 (391)
T PRK05985        102 ALARAAAAAGTTAMRSHVDVDPDAGLRH-LEAVLAARETLRGLIDIQIVAFP-QSGVLSRPGTA-----ELLDAALRAGA  174 (391)
T ss_pred             HHHHHHHhcCcceEEeeEccCCCcccch-HHHHHHHHHHhhCcccEEEEecc-CccccCCcCHH-----HHHHHHHHcCC
Confidence            33555666676553 1111111112222 33344445444  5778888788 66666554433     44667777888


Q ss_pred             CEEEEeeecCCC--CcCHHHHHHHHHHhC--CCCeEEee
Q psy7930          97 DGFVIGALTGEQ--EIDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        97 dG~VfG~L~~dg--~iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +  ++|.+.+..  ....+.++++++.|+  ++++.+|-
T Consensus       175 ~--~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv  211 (391)
T PRK05985        175 D--VVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHL  211 (391)
T ss_pred             C--EEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEee
Confidence            5  445564422  233477888888876  78899994

>TIGR02814 pfaD_fam PfaD family protein

Probab=80.60  E-value=4.3  Score=36.88  Aligned_cols=104  Identities=23%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHcC-CCEEEecCCCCCCCCCC---CHHHHHHHH---hhC------CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          18 SVASALAAVRGG-ADRLELCAALSEGGLTP---TLGLYRVIK---RLV------LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        18 s~~~a~~A~~~G-AdRIELc~~l~~GGlTP---S~g~i~~~~---~~~------~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      |.++|..|++.| ||=|  |...+.||-|.   ...++..+.   +.+      ..||.|..   -||  ..|.      
T Consensus       170 t~eEA~~a~~~g~aD~I--vve~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViA---AGG--I~t~------  236 (444)
T TIGR02814       170 TREEAELARRVPVADDI--CVEADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGA---AGG--IGTP------  236 (444)
T ss_pred             CHHHHHHHHhCCCCcEE--EEeccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEE---eCC--CCCH------
Confidence            778888899999 6888  54578888876   455565554   222      23544332   244  3333      


Q ss_pred             HHHHHHHHHcCCCEEEEeeec---CCCCcCHHHHHHHHHHhCCCCeEEeecccCC
Q psy7930          85 ALDCHQFVESGADGFVIGALT---GEQEIDIEFIRQLKTIIGDRPITFHRAFDVV  136 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~---~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~  136 (146)
                       +++..+..+|||||+.|=..   .+-... +..++++..+..-+.++--|-|+.
T Consensus       237 -~~vaAAlaLGAdgV~~GT~flat~Esgas-~~~K~~L~~a~~~DT~~ap~~dmf  289 (444)
T TIGR02814       237 -EAAAAAFMLGADFIVTGSVNQCTVEAGTS-DNVKKLLAKADVQDTAYAPAGDMF  289 (444)
T ss_pred             -HHHHHHHHcCCcEEEeccHHHhCccccCC-HHHHHHHHhCCCcCeEEecCcccc
Confidence             56777889999999999542   222222 345677767777777777776664

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=80.37  E-value=8.4  Score=33.70  Aligned_cols=83  Identities=24%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             HHHHHHHHHcCCCEEEecC-C---C--------------CCCCC-----CCCHHHHHHHHhhC--CCcEEEEEccCCC--
Q psy7930          19 VASALAAVRGGADRLELCA-A---L--------------SEGGL-----TPTLGLYRVIKRLV--LVPVFVMIRVRAG--   71 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~-~---l--------------~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRP~R~--   71 (146)
                      .+.|..|+++|.|-|||-. +   |              .-||.     --...+++.+++.+  +.||-+=|+| ..  
T Consensus       153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~-~~~~  231 (382)
T cd02931         153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV-KSYI  231 (382)
T ss_pred             HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec-hhhc
Confidence            3678889999999999975 2   2              11441     11245788888877  4567666665 21  


Q ss_pred             ----------CCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          72 ----------FDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        72 ----------gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                                .+|......++.+.+=++.+.+.|+|-+-+-
T Consensus       232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs  272 (382)
T cd02931         232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD  272 (382)
T ss_pred             cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence                      0122222234445555677778899988663

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=80.36  E-value=23  Score=29.40  Aligned_cols=106  Identities=17%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCC------CCCCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCc-ccCHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALS------EGGLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDF-VFSQAEKEIMA   85 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~------~GGlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF-~Ys~~E~~~M~   85 (146)
                      +...+..|.+.|.+.|.++..-+      .=|.|+.  ...++.+.+.   .+..|.+-  + -  +| ..+..+.+...
T Consensus        80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~-~--~~~d~~~~~~~~~~  154 (273)
T cd07941          80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFD--A-E--HFFDGYKANPEYAL  154 (273)
T ss_pred             chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEe--E-E--eccccCCCCHHHHH
Confidence            34567778999999998874321      1233331  2222222222   25555442  3 1  12 11223455556


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEe
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFH  130 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFH  130 (146)
                      +=++.+.++|++.|.  +-+.-|....+.+.+|++..+   + .++-||
T Consensus       155 ~~~~~~~~~g~~~i~--l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H  201 (273)
T cd07941         155 ATLKAAAEAGADWLV--LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIH  201 (273)
T ss_pred             HHHHHHHhCCCCEEE--EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEE
Confidence            666777889999765  457788888888888887764   3 667776

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=80.18  E-value=20  Score=30.52  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             HHHH-cCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEE--ccCC---CCCcc---cCHHHHHHHHHHHHHHHHc
Q psy7930          24 AAVR-GGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMI--RVRA---GFDFV---FSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        24 ~A~~-~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMI--RP~R---~gdF~---Ys~~E~~~M~~dI~~~~~~   94 (146)
                      ...+ +|||-+-|=     ||. -...+++.+.+ .+|||.--|  .|.+   -|+|.   =+.++-+.+.+|.+.+.++
T Consensus       102 rl~ke~GadaVKlE-----Gg~-~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~A  174 (261)
T PF02548_consen  102 RLMKEAGADAVKLE-----GGA-EIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEA  174 (261)
T ss_dssp             HHHHTTT-SEEEEE-----BSG-GGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEec-----cch-hHHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHc
Confidence            3444 899998874     554 45666666544 589998888  3411   13444   3689999999999999999


Q ss_pred             CCCEEEEeeecC
Q psy7930          95 GADGFVIGALTG  106 (146)
Q Consensus        95 GadG~VfG~L~~  106 (146)
                      |+-++|+=+..+
T Consensus       175 Gaf~ivlE~vp~  186 (261)
T PF02548_consen  175 GAFAIVLECVPA  186 (261)
T ss_dssp             T-SEEEEESBBH
T ss_pred             CccEEeeecCHH
Confidence            999999987553

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3

Probab=80.14  E-value=2.4  Score=36.38  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeec------CCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          82 EIMALDCHQFVESGADGFVIGALT------GEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~------~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      +.+++|++.++++|++-|-+|.+.      +.|..|.+.+.++++.++  |+.|.+
T Consensus        10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL   65 (374)
T PF02449_consen   10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVIL   65 (374)
T ss_dssp             CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEE
Confidence            678999999999999999998763      469999999999999997  666665

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=80.13  E-value=9.3  Score=32.22  Aligned_cols=89  Identities=17%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHH-HHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYR-VIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~-~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +...|+.-+..+...|-|-+-+-.  +.|-+  +...+. .++......+-+|+|+ ..+++           ..|+.+.
T Consensus        24 ~~~~sp~~~E~~a~~GfD~v~iD~--EHg~~--~~~~l~~~i~a~~~~g~~~lVRv-p~~~~-----------~~i~r~L   87 (267)
T PRK10128         24 LSSTTSYMAEIAATSGYDWLLIDG--EHAPN--TIQDLYHQLQAIAPYASQPVIRP-VEGSK-----------PLIKQVL   87 (267)
T ss_pred             ecCCCcHHHHHHHHcCCCEEEEcc--ccCCC--CHHHHHHHHHHHHhcCCCeEEEC-CCCCH-----------HHHHHHh
Confidence            345677888888899999998864  34433  333333 2322223456679998 77763           5678899


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ++||+||++=-.+     ..+..++++++++
T Consensus        88 D~GA~GIivP~V~-----saeeA~~~V~a~r  113 (267)
T PRK10128         88 DIGAQTLLIPMVD-----TAEQARQVVSATR  113 (267)
T ss_pred             CCCCCeeEecCcC-----CHHHHHHHHHhcC
Confidence            9999999997655     3678899999997

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=80.09  E-value=19  Score=34.38  Aligned_cols=95  Identities=14%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             cceeEEEecCHHHHHHHHH----c---CCCEEEecCCCC---CCCCCC--CHHHHHHHHhhCC---CcEEEE--EccCCC
Q psy7930           9 KTTLEVCVDSVASALAAVR----G---GADRLELCAALS---EGGLTP--TLGLYRVIKRLVL---VPVFVM--IRVRAG   71 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~----~---GAdRIELc~~l~---~GGlTP--S~g~i~~~~~~~~---ipv~vM--IRP~R~   71 (146)
                      +.++=+-+-|.+++..|.+    .   |||-|=+-.-..   --|.+|  ....++++++.++   +||+++  |.|   
T Consensus       101 ~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI~~---  177 (755)
T PRK09517        101 HLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGVGL---  177 (755)
T ss_pred             CCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCCCH---
Confidence            3567888899998766432    2   599998875332   224444  5678888888887   999987  444   


Q ss_pred             CCcccCHHHHHHHHHHHHHHHHcCCCEEEE-eeecCCCCcCH-HHHHHHHHHh
Q psy7930          72 FDFVFSQAEKEIMALDCHQFVESGADGFVI-GALTGEQEIDI-EFIRQLKTII  122 (146)
Q Consensus        72 gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~-~~~~~Li~~a  122 (146)
                                    +++..+++.|++||.+ +++..  .-|. +++++|.++.
T Consensus       178 --------------~~~~~~~~~Ga~giAvisai~~--a~d~~~a~~~l~~~~  214 (755)
T PRK09517        178 --------------RNAAELAATGIDGLCVVSAIMA--AANPAAAARELRTAF  214 (755)
T ss_pred             --------------HHHHHHHHcCCCEEEEehHhhC--CCCHHHHHHHHHHHH
Confidence                          7899999999999854 44442  2232 3444455433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3iwp_A	287	Crystal Structure Of Human Copper Homeostasis Prote		2e-33
1x7i_A	256	Crystal Structure Of The Native Copper Homeostasis		2e-21
1twd_A	256	Crystal Structure Of The Putative Copper Homeostasi		1e-20
1x8c_A	256	Crystal Structure Of The Semet-derivative Copper Ho		1e-20
2bdq_A	224	Crystal Structure Of The Putative Copper Homeostasi		3e-13

>pdb|3IWP|A Chain A, Crystal Structure Of Human Copper Homeostasis Protein Cutc Length = 287

Iteration: 1
 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 89/132 (67%), Gaps = 1/132 (0%)
Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 38  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 97
Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G DF++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 98  PRGG-DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 156
Query: 128 TFHRAFDVVREP 139
           TFHRAFD+V +P
Sbjct: 157 TFHRAFDMVHDP 168

>pdb|1X7I|A Chain A, Crystal Structure Of The Native Copper Homeostasis Protein (Cutcm) With Calcium Binding From Shigella Flexneri 2a Str. 301 Length = 256

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LE+C  S+  AL A + GADR+ELCAA  EGGLTP+LG+ + +++ V +PV  +IR R G
Sbjct: 4   LEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGG 63
Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF +S  E   +  D     E G  G V G L  +  +D+  + ++    G   +TFHR
Sbjct: 64  -DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHR 122
Query: 132 AFDVVREP 139
           AFD+   P
Sbjct: 123 AFDMCANP 130

>pdb|1TWD|A Chain A, Crystal Structure Of The Putative Copper Homeostasis Protein (Cutc) From Shigella Flexneri, Northeast Structural Genomics Target Sfr33 Length = 256

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LE+C  S   AL A + GADR+ELCAA  EGGLTP+LG+ + +++ V +PV  +IR R G
Sbjct: 4   LEICCYSXECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGG 63
Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF +S  E   +  D     E G  G V G L  +  +D     ++    G   +TFHR
Sbjct: 64  -DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDXPRXEKIXAAAGPLAVTFHR 122
Query: 132 AFDVVREP 139
           AFD    P
Sbjct: 123 AFDXCANP 130

>pdb|1X8C|A Chain A, Crystal Structure Of The Semet-derivative Copper Homeostasis Protein (cutcm) With Calcium Binding From Shigella Flexneri 2a Str. 301 Length = 256

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LE+C  S   AL A + GADR+ELCAA  EGGLTP+LG+ + +++ V +PV  +IR R G
Sbjct: 4   LEICCYSXECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGG 63
Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF +S  E   +  D     E G  G V G L  +  +D     ++    G   +TFHR
Sbjct: 64  -DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDXPRXEKIXAAAGPLAVTFHR 122
Query: 132 AFDVVREP 139
           AFD    P
Sbjct: 123 AFDXCANP 130

>pdb|2BDQ|A Chain A, Crystal Structure Of The Putative Copper Homeostasis Protein Cutc From Streptococcus Agalactiae, Northeast Strucural Genomics Target Sar15. Length = 224

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 13  EVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRVR 69
           E C +++       +    R+ELC  L+ GG TP+ G+ +   + +    + V V IR R
Sbjct: 5   EFCAENLTDLTRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVXIRPR 64
Query: 70  AGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129
            G +FV++  E  I   D  + VE  +D  V+G LT    ID E I QL       P+ F
Sbjct: 65  GG-NFVYNDLELRIXEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVF 123
Query: 130 HRAFDVVREPNEKR 143
           H AFDV+ + ++K+
Sbjct: 124 HXAFDVIPKSDQKK 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	2e-42
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	7e-41
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	2e-39

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} Length = 287

 Score =  141 bits (355), Expect = 2e-42
 Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 1/134 (0%)

Query: 8   NKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR 67
           N   +EVCVDSV SA+ A RGGADR+ELC+ LSEGG TP++G+ +V+K+ V +PVFVMIR
Sbjct: 38  NGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIR 97

Query: 68  VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPI 127
            R G  F++S  E E+M  D       GADG V GALT +  ID E    L  I    P+
Sbjct: 98  PRGGD-FLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPV 156

Query: 128 TFHRAFDVVREPNE 141
           TFHRAFD+V +P  
Sbjct: 157 TFHRAFDMVHDPMA 170

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Length = 256

 Score =  136 bits (342), Expect = 7e-41
 Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 1/132 (0%)

Query: 10  TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR 69
             LE+C  S+  AL A + GADR+ELCAA  EGGLTP+LG+ + +++ V +PV  +IR R
Sbjct: 2   ALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR 61

Query: 70  AGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITF 129
            G DF +S  E   +  D     E G  G V G L  +  +D+  + ++    G   +TF
Sbjct: 62  GG-DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTF 120

Query: 130 HRAFDVVREPNE 141
           HRAFD+   P  
Sbjct: 121 HRAFDMCANPLY 132

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} Length = 224

 Score =  131 bits (330), Expect = 2e-39
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRV 68
            E C +++       +    R+ELC  L+ GG TP+ G+ +   + +    + V VMIR 
Sbjct: 4   REFCAENLTDLTRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRP 63

Query: 69  RAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT 128
           R G +FV++  E  IM  D  + VE  +D  V+G LT    ID E I QL       P+ 
Sbjct: 64  RGG-NFVYNDLELRIMEEDILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLV 122

Query: 129 FHRAFDVVREPN 140
           FH AFDV+ + +
Sbjct: 123 FHMAFDVIPKSD 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	100.0
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	100.0
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	100.0
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.69
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	98.35
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	97.41
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.34
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	97.1
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	96.99
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.91
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.87
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.86
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	96.86
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	96.85
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.85
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	96.77
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	96.64
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.62
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	96.58
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.58
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	96.56
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.49
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	96.47
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.46
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	96.46
3kws_A	287	Putative sugar isomerase; structural genomics, joi	96.45
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.43
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	96.37
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	96.37
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	96.32
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.32
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.31
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	96.27
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	96.26
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	96.26
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.22
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	96.2
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	96.19
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	96.16
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	96.15
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	96.1
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	96.07
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	96.06
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	95.98
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	95.98
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	95.97
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	95.96
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	95.95
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	95.95
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	95.94
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	95.92
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	95.84
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	95.8
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	95.79
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.79
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	95.78
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	95.74
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	95.73
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	95.68
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	95.67
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	95.67
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	95.66
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.64
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	95.53
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.51
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	95.47
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	95.46
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	95.4
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	95.38
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	95.36
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	95.35
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	95.35
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	95.32
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	95.3
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	95.29
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	95.29
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	95.28
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	95.28
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	95.28
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	95.25
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.24
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.24
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	95.24
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	95.21
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	95.19
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	95.15
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	95.13
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.11
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.09
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	95.05
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	95.02
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	95.01
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	94.92
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.92
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	94.91
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	94.88
2hk0_A	309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	94.85
3ayv_A	254	Putative uncharacterized protein TTHB071; structur	94.81
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	94.78
3cny_A	301	Inositol catabolism protein IOLE; xylose isomerase	94.76
2q02_A	272	Putative cytoplasmic protein; structural genomics,	94.74
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	94.74
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	94.73
4ad1_A	380	Glycosyl hydrolase family 71; glycoside hydrolase	94.73
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	94.66
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	94.61
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.59
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	94.54
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	94.5
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	94.48
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	94.45
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	94.44
3u0h_A	281	Xylose isomerase domain protein; structural genomi	94.44
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	94.43
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	94.3
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	94.25
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	94.18
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	94.16
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	94.15
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.05
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	94.04
2qw5_A	335	Xylose isomerase-like TIM barrel; putative sugar p	94.03
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	94.01
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	93.99
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	93.98
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	93.96
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	93.96
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	93.86
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	93.72
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	93.71
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	93.7
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	93.69
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	93.49
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	93.46
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	93.45
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	93.43
4acy_A	382	Endo-alpha-mannosidase; hydrolase, endomannosidase	93.4
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	93.4
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	93.38
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	93.37
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	93.35
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	93.27
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	93.24
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	93.22
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	93.19
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	93.16
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	93.15
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	93.03
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	93.0
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	92.95
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	92.89
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	92.74
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	92.74
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	92.66
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	92.55
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	92.53
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	92.4
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	92.32
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	92.25
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	92.16
1viz_A	240	PCRB protein homolog; structural genomics, unknown	92.13
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	92.09
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	92.07
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	92.02
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	92.0
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	91.94
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	91.83
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	91.75
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	91.71
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	91.65
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	91.64
3bdk_A	386	D-mannonate dehydratase; xylose isomerase-like TIM	91.58
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.54
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	91.54
2zds_A	340	Putative DNA-binding protein; TIM-barrel fold, str	91.35
1xim_A	393	D-xylose isomerase; isomerase(intramolecular oxido	91.34
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	91.29
1bxb_A	387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	91.27
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	91.22
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	91.14
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	91.04
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	91.03
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	91.02
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	90.96
1muw_A	386	Xylose isomerase; atomic resolution, disorder; 0.8	90.94
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	90.93
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	90.93
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	90.91
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	90.8
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	90.74
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	90.7
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	90.68
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	90.22
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	90.09
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	90.0
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	89.94
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	89.92
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	89.9
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	89.8
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	89.77
1xla_A	394	D-xylose isomerase; isomerase(intramolecular oxido	89.74
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	89.71
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	89.6
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	89.56
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	89.51
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	89.46
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	89.22
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	89.19
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	89.15
3qz6_A	261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	89.14
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	89.11
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	88.99
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	88.56
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	88.43
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	88.41
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	88.02
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	87.96
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	87.91
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	87.33
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	87.3
2xfr_A	535	Beta-amylase; hydrolase, carbohydrate metabolism,	87.3
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	87.25
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	87.23
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	87.19
1viz_A	240	PCRB protein homolog; structural genomics, unknown	87.1
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	87.06
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	87.05
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	87.03
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	87.03
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	86.93
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	86.92
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	86.8
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	86.8
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	86.45
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	86.29
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	86.21
3ktc_A	333	Xylose isomerase; putative sugar isomerase, struct	86.06
2zsk_A	226	PH1733, 226AA long hypothetical aspartate racemase	86.05
1wdp_A	495	Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2	86.04
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	85.92
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	85.8
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	85.57
3tty_A	675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	85.46
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	85.45
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	85.42
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	85.35
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	85.34
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	85.27
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	85.24
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	85.18
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	85.14
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	85.12
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	85.11
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	85.0
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	84.92
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	84.91
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	84.81
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	84.78
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	84.76
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	84.76
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	84.7
2vws_A	267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	84.65
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	84.48
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	84.36
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	84.21
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	84.2
1fa2_A	498	Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3	84.18
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	84.0
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	83.93
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	83.52
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	83.27
1u5h_A	273	CITE; TIM barrel, structural genomics, PSI, protei	83.26
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	83.23
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	83.06
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	83.06
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	82.97
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	82.96
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	82.88
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	82.8
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	82.75
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	82.7
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	82.68
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	82.44
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	82.39
2atm_A	331	Hyaluronoglucosaminidase; beta-alpha-barrels, hydr	82.33
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	81.71
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	81.6
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	81.48
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	81.45
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	81.19
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	81.17
2hbv_A	334	2-amino-3-carboxymuconate 6-semialdehyde decarbox;	80.94
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	80.88
3ble_A	337	Citramalate synthase from leptospira interrogans;	80.86
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	80.83
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	80.76
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	80.56
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	80.53
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	80.4
3ble_A	337	Citramalate synthase from leptospira interrogans;	80.12
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	80.06

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=100.00  E-value=8.7e-62  Score=395.83  Aligned_cols=132  Identities=33%  Similarity=0.509  Sum_probs=129.3

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHH---hhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIK---RLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~---~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +++|||++|+++|.+|+++||||||||++|++||||||+|++++++   +.++|||+||||| |+|||+||++|+++|++
T Consensus         2 ~llEvc~~s~~~a~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRP-R~GdF~Ys~~E~~~M~~   80 (224)
T 2bdq_A            2 ILREFCAENLTDLTRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRP-RGGNFVYNDLELRIMEE   80 (224)
T ss_dssp             CEEEEEEETTTTGGGCCTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCS-SSSCSCCCHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECC-CCCCCcCCHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999   8999999999999 99999999999999999


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCC--CCcccc
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVV--REPNEK  142 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~--~d~~~~  142 (146)
                      ||+.++++|+||||||+||+||+||.+++++|+++|+|+++|||||||.+  +||.++
T Consensus        81 Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~a  138 (224)
T 2bdq_A           81 DILRAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKS  138 (224)
T ss_dssp             HHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHH
T ss_pred             HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999  998874

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=100.00  E-value=4e-61  Score=398.29  Aligned_cols=132  Identities=39%  Similarity=0.645  Sum_probs=129.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ++||||++|+++|.+|+++||||||||++|++||||||+|+++.+++.++|||+||||| |+|||+||++|+++|++||+
T Consensus         2 ~~lEvc~~s~~~a~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRP-R~GdF~Ys~~E~~~M~~Di~   80 (256)
T 1twd_A            2 ALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP-RGGDFCYSDGEFAAILEDVR   80 (256)
T ss_dssp             CEEEEEESSHHHHHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS-SSSCSCCCHHHHHHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECC-CCCCCcCCHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCcccc
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEK  142 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~~  142 (146)
                      .++++|+||||||+||+||+||.+++++|+++|+|+++|||||||+++||.++
T Consensus        81 ~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~a  133 (256)
T 1twd_A           81 TVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYT  133 (256)
T ss_dssp             HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHH
T ss_pred             HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999874

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.7e-56  Score=375.54  Aligned_cols=136  Identities=51%  Similarity=0.789  Sum_probs=131.8

Q ss_pred             ccccceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930           6 LWNKTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus         6 ~~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      ++++++||||++|++++.+|+++||||||||++|.+||||||+++++.+++.++|||+||||| |+|||+||++|+++|+
T Consensus        36 ~~~~~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRP-RgGdF~Ys~~E~~~M~  114 (287)
T 3iwp_A           36 AANGFLMEVCVDSVESAVNAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRP-RGGDFLYSDREIEVMK  114 (287)
T ss_dssp             --CCSEEEEEESSHHHHHHHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCS-SSSCSCCCHHHHHHHH
T ss_pred             CCCCceEEEEeCCHHHHHHHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEec-CCCCcccCHHHHHHHH
Confidence            477899999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCcccc
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNEK  142 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~~  142 (146)
                      +||+.++++||||||||+||+||+||.+++++|+++|+++++|||||||+++||.++
T Consensus       115 ~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~A  171 (287)
T 3iwp_A          115 ADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAA  171 (287)
T ss_dssp             HHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHH
T ss_pred             HHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999763

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.69  E-value=2.5e-08  Score=79.89  Aligned_cols=100  Identities=17%  Similarity=0.150  Sum_probs=74.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCC-----------------CCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930          19 VASALAAVRGGADRLELCAALS-----------------EGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~-----------------~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      .+.+..++++|||.|||+..++                 .+|+||+  +.+++++++..++|+++|.++ . ..|.|.- 
T Consensus        35 ~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~-~-~~~~~~~-  111 (262)
T 1rd5_A           35 AEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYY-K-PIMFRSL-  111 (262)
T ss_dssp             HHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCS-H-HHHSCCT-
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecC-c-HHHHHHH-
Confidence            4567888899999999997665                 6889998  678999999889999999765 2 1233332 


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeecccCC
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRAFDVV  136 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRAFD~~  136 (146)
                               +.+++.|+||+++.    |..++  ...++++.++  +++.++|.+.+..
T Consensus       112 ---------~~a~~aGadgv~v~----d~~~~--~~~~~~~~~~~~g~~~i~~~a~~t~  155 (262)
T 1rd5_A          112 ---------AKMKEAGVHGLIVP----DLPYV--AAHSLWSEAKNNNLELVLLTTPAIP  155 (262)
T ss_dssp             ---------HHHHHTTCCEEECT----TCBTT--THHHHHHHHHHTTCEECEEECTTSC
T ss_pred             ---------HHHHHcCCCEEEEc----CCChh--hHHHHHHHHHHcCCceEEEECCCCC
Confidence                     22899999999985    33332  3566766654  7889999987643

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=98.35  E-value=5e-07  Score=71.12  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             HHHHHHHHcCCCEEEec---CC-CCCCCC-------------CC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930          20 ASALAAVRGGADRLELC---AA-LSEGGL-------------TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc---~~-l~~GGl-------------TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +.+...+++ ||+|||+   +. ..-|.+             +.  +..+++++++.+++||++|+.. +. .|.|.   
T Consensus        23 ~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~-~~-~~~~~---   96 (248)
T 1geq_A           23 NFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYY-NP-IYRAG---   96 (248)
T ss_dssp             HHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECH-HH-HHHHC---
T ss_pred             HHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEecc-ch-hhhcC---
Confidence            456777788 9999999   32 222333             33  3789999999889999999854 22 36666   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEeeecC
Q psy7930          81 KEIMALDCHQFVESGADGFVIGALTG  106 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG~L~~  106 (146)
                         +.++++.+.++|+||+++|.+..
T Consensus        97 ---~~~~~~~~~~~Gad~v~~~~~~~  119 (248)
T 1geq_A           97 ---VRNFLAEAKASGVDGILVVDLPV  119 (248)
T ss_dssp             ---HHHHHHHHHHHTCCEEEETTCCG
T ss_pred             ---HHHHHHHHHHCCCCEEEECCCCh
Confidence               56789999999999999997654

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=97.41  E-value=0.00041  Score=56.13  Aligned_cols=88  Identities=24%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC------CHHHHHHHHhhCCCcEEEE--Ec-cCCCCCcccCHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTP------TLGLYRVIKRLVLVPVFVM--IR-VRAGFDFVFSQAEKE   82 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP------S~g~i~~~~~~~~ipv~vM--IR-P~R~gdF~Ys~~E~~   82 (146)
                      +=+++.+.+.+..+.+.|++-|     +..||.|+      +...++.+++..++||.+.  |+ |              
T Consensus       130 i~~~~~~~~~a~~~~~~gad~v-----~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~--------------  190 (264)
T 1xm3_A          130 LPYTSDDVVLARKLEELGVHAI-----MPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSP--------------  190 (264)
T ss_dssp             EEEECSCHHHHHHHHHHTCSCB-----EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSH--------------
T ss_pred             EEEcCCCHHHHHHHHHhCCCEE-----EECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCH--------------
Confidence            3367889999999999999998     22344433      3678999999889999887  54 5              


Q ss_pred             HHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHHh
Q psy7930          83 IMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~a  122 (146)
                         +|+..+.++|||||++| ++..... -.+.+++|+++.
T Consensus       191 ---eda~~~~~~GAdgViVGSAi~~a~d-p~~~~~~l~~~v  227 (264)
T 1xm3_A          191 ---KDAAYAMELGADGVLLNTAVSGADD-PVKMARAMKLAV  227 (264)
T ss_dssp             ---HHHHHHHHTTCSEEEESHHHHTSSS-HHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCEEEEcHHHhCCCC-HHHHHHHHHHHH
Confidence               67888999999999999 4443211 134566665443

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.34  E-value=0.00079  Score=53.07  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=62.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +..+-+..++++||+.|++-+--.. .|..+....++.+++..++||.++      | |..+.       .|+..+++.|
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~------g-gi~~~-------~~i~~~~~~G   96 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------G-GAGKM-------EHFLEAFLAG   96 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEE------S-CCCST-------HHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEE------C-CCCCH-------HHHHHHHHcC
Confidence            3456678889999999999652222 355578999999999999998763      2 33333       3466677789


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |||+++|-..-++.+|.+.++++++..+
T Consensus        97 ad~v~lg~~~~~~~~~~~~~~~~~~~~g  124 (266)
T 2w6r_A           97 ADKALAASVFHFREIDMRELKEYLKKHG  124 (266)
T ss_dssp             CSEEECCCCC------CHHHHHHCC---
T ss_pred             CcHhhhhHHHHhCCCCHHHHHHHHHHcC
Confidence            9999999876656678888888776655

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=97.10  E-value=0.0016  Score=52.57  Aligned_cols=84  Identities=21%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      .+-|...+++||+.|-+...  .+-...+...++.+++.+++||.   |.    ||..++.       ++..++++|||+
T Consensus        68 ~~~A~~~~~~GA~~isvlt~--~~~f~G~~~~l~~i~~~v~lPvl---~k----dfI~d~~-------qi~~a~~~GAD~  131 (254)
T 1vc4_A           68 VEAALAYARGGARAVSVLTE--PHRFGGSLLDLKRVREAVDLPLL---RK----DFVVDPF-------MLEEARAFGASA  131 (254)
T ss_dssp             HHHHHHHHHTTCSEEEEECC--CSSSCCCHHHHHHHHHHCCSCEE---EE----SCCCSHH-------HHHHHHHTTCSE
T ss_pred             HHHHHHHHHcCCCEEEEecc--hhhhccCHHHHHHHHHhcCCCEE---EC----CcCCCHH-------HHHHHHHcCCCE
Confidence            45588899999999998642  22233489999999999999973   43    6998876       467789999999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      |.+|.-.    ++ +.+++|++.++
T Consensus       132 VlL~~~~----l~-~~l~~l~~~a~  151 (254)
T 1vc4_A          132 ALLIVAL----LG-ELTGAYLEEAR  151 (254)
T ss_dssp             EEEEHHH----HG-GGHHHHHHHHH
T ss_pred             EEECccc----hH-HHHHHHHHHHH
Confidence            9999753    34 67888888776

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=96.99  E-value=0.0013  Score=53.12  Aligned_cols=79  Identities=19%  Similarity=0.326  Sum_probs=56.1

Q ss_pred             HHHHHHHHHcCCCEEEecCCCC-----------------CCCCCCC--HHHHHHHHhh-CCCcEEEEEccCCCCCcccCH
Q psy7930          19 VASALAAVRGGADRLELCAALS-----------------EGGLTPT--LGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~-----------------~GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .+.+...+++|||-|||---++                 .+|+|.+  ..+++++++. .++||++|+.- . .-|.|.-
T Consensus        34 ~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~-n-~v~~~g~  111 (268)
T 1qop_A           34 LKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYA-N-LVFNNGI  111 (268)
T ss_dssp             HHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECH-H-HHHTTCH
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcc-c-HHHHhhH
Confidence            3457777889999999965332                 3455554  3679999988 79999999632 1 1233443


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                            .+.++.+.+.|+||+++.-+.
T Consensus       112 ------~~~~~~~~~aGadgii~~d~~  132 (268)
T 1qop_A          112 ------DAFYARCEQVGVDSVLVADVP  132 (268)
T ss_dssp             ------HHHHHHHHHHTCCEEEETTCC
T ss_pred             ------HHHHHHHHHcCCCEEEEcCCC
Confidence                  467888999999999997555

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.91  E-value=0.0032  Score=50.14  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC--cccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD--FVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd--F~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +=|.+++++||.=|+.          .|...++++++.+++||.-++|- -+++  |.-++.     .++++.++++|||
T Consensus        40 ~~A~a~~~~Ga~~i~~----------~~~~~i~~ir~~v~~Pvig~~k~-~~~~~~~~I~~~-----~~~i~~~~~aGad  103 (229)
T 3q58_A           40 AMAQAAASAGAVAVRI----------EGIENLRTVRPHLSVPIIGIIKR-DLTGSPVRITPY-----LQDVDALAQAGAD  103 (229)
T ss_dssp             HHHHHHHHTTCSEEEE----------ESHHHHHHHGGGCCSCEEEECBC-CCSSCCCCBSCS-----HHHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCcEEEE----------CCHHHHHHHHHhcCCCEEEEEee-cCCCCceEeCcc-----HHHHHHHHHcCCC
Confidence            4577889999999985          36889999999999999887776 5555  433331     2467788999999


Q ss_pred             EEEEeee
Q psy7930          98 GFVIGAL  104 (146)
Q Consensus        98 G~VfG~L  104 (146)
                      .|++++-
T Consensus       104 ~I~l~~~  110 (229)
T 3q58_A          104 IIAFDAS  110 (229)
T ss_dssp             EEEEECC
T ss_pred             EEEECcc
Confidence            9998873

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.87  E-value=0.0076  Score=47.92  Aligned_cols=93  Identities=12%  Similarity=0.131  Sum_probs=63.0

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEec-CCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELC-AALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc-~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +.+=+.+.|.+.+..|++.|||-|=.. .++..++  ..|.+.+++++++. ++||..     -|| . .|.       +
T Consensus       130 ~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvIA-----~GG-I-~t~-------~  194 (229)
T 3q58_A          130 LLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVIA-----EGR-Y-NTP-------A  194 (229)
T ss_dssp             CEEEEECSSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEEE-----ESS-C-CSH-------H
T ss_pred             CEEEEecCCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEEE-----ECC-C-CCH-------H
Confidence            344467789999999999999999532 2232222  35788999999887 888754     244 2 122       5


Q ss_pred             HHHHHHHcCCCEEEEee-ecCCCCcCHHHHHHHHHH
Q psy7930          87 DCHQFVESGADGFVIGA-LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~  121 (146)
                      |+..+.++|||||++|= |..    -...+++++++
T Consensus       195 d~~~~~~~GadgV~VGsai~~----p~~~~~~f~~~  226 (229)
T 3q58_A          195 LAANAIEHGAWAVTVGSAITR----IEHICQWFSHA  226 (229)
T ss_dssp             HHHHHHHTTCSEEEECHHHHC----HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEchHhcC----hHHHHHHHHHH
Confidence            77778899999999992 221    23455555554

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.86  E-value=0.0069  Score=49.84  Aligned_cols=85  Identities=24%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             HHHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-|...+++||+.|-....- ..+|   |...++.+++.+++||.   |=    ||..++.       +|..++.+|||+
T Consensus        83 ~~A~~y~~~GA~~IsVltd~~~f~G---s~~~L~~ir~~v~lPVl---~K----dfi~d~~-------qi~ea~~~GAD~  145 (272)
T 3tsm_A           83 ALAKAYEEGGAACLSVLTDTPSFQG---APEFLTAARQACSLPAL---RK----DFLFDPY-------QVYEARSWGADC  145 (272)
T ss_dssp             HHHHHHHHTTCSEEEEECCSTTTCC---CHHHHHHHHHTSSSCEE---EE----SCCCSTH-------HHHHHHHTTCSE
T ss_pred             HHHHHHHHCCCCEEEEeccccccCC---CHHHHHHHHHhcCCCEE---EC----CccCCHH-------HHHHHHHcCCCE
Confidence            45788889999999887632 2233   88899999999999984   32    5877766       377889999999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIGDR  125 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~~~  125 (146)
                      |.+++-    .++.+.+++|++.|+.+
T Consensus       146 VlLi~a----~L~~~~l~~l~~~a~~l  168 (272)
T 3tsm_A          146 ILIIMA----SVDDDLAKELEDTAFAL  168 (272)
T ss_dssp             EEEETT----TSCHHHHHHHHHHHHHT
T ss_pred             EEEccc----ccCHHHHHHHHHHHHHc
Confidence            999964    35778899999998743

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=96.86  E-value=0.0035  Score=50.44  Aligned_cols=91  Identities=23%  Similarity=0.367  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCCCEEEecCCCC-----------------CCCCCCC--HHHHHHHHhhC-CCcEEEEEccCCCCCcccCH
Q psy7930          19 VASALAAVRGGADRLELCAALS-----------------EGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~-----------------~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .+-+...+++|+|-|||---++                 ..|+|..  ..+++++++.+ ++|+.+|--.  ..-|.|. 
T Consensus        34 ~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~--n~v~~~g-  110 (262)
T 2ekc_A           34 LKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYY--NPIFRIG-  110 (262)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCH--HHHHHHC-
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecC--cHHHHhh-
Confidence            3457777889999999965332                 2455543  45688888888 9999988211  0012222 


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                           ..+.++.+++.|+||+++.-|      ..+...++++.++
T Consensus       111 -----~~~f~~~~~~aG~dgvii~dl------~~ee~~~~~~~~~  144 (262)
T 2ekc_A          111 -----LEKFCRLSREKGIDGFIVPDL------PPEEAEELKAVMK  144 (262)
T ss_dssp             -----HHHHHHHHHHTTCCEEECTTC------CHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHcCCCEEEECCC------CHHHHHHHHHHHH
Confidence                 267788899999999988532      2355677777665

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=96.85  E-value=0.0056  Score=46.24  Aligned_cols=98  Identities=24%  Similarity=0.361  Sum_probs=67.2

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCC----CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALS----EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~----~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      .+++-+.+.|.+++..+.+.|+|.|=+-.-..    .|+.+.+...++++++..++||.+.     || -.  .      
T Consensus       108 ~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~-----GG-I~--~------  173 (215)
T 1xi3_A          108 NLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAI-----GG-IN--K------  173 (215)
T ss_dssp             TSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEE-----SS-CC--T------
T ss_pred             CCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEE-----CC-cC--H------
Confidence            34566778999999999999999997632111    2234556788888888888998653     33 21  1      


Q ss_pred             HHHHHHHHHcCCCEEEEee-ecCCCCcCH-HHHHHHHHHhC
Q psy7930          85 ALDCHQFVESGADGFVIGA-LTGEQEIDI-EFIRQLKTIIG  123 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~-L~~dg~iD~-~~~~~Li~~a~  123 (146)
                       +++..+.+.|++||++|- +....  |. +.++++++..+
T Consensus       174 -~nv~~~~~~Ga~gv~vgs~i~~~~--d~~~~~~~~~~~~~  211 (215)
T 1xi3_A          174 -DNAREVLKTGVDGIAVISAVMGAE--DVRKATEELRKIVE  211 (215)
T ss_dssp             -TTHHHHHTTTCSEEEESHHHHTSS--SHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCEEEEhHHHhCCC--CHHHHHHHHHHHHh
Confidence             367778889999999994 32221  55 57778776653

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.85  E-value=0.0038  Score=49.73  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCC--cccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFD--FVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gd--F~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +=|.+++++||.-|+.          .|...++++++.+++||.-++|. ..|+  |.-++.     .++++.++++|||
T Consensus        40 ~~A~a~~~~Ga~~i~~----------~~~~~i~~ir~~v~~Pvig~~k~-d~~~~~~~I~~~-----~~~i~~~~~~Gad  103 (232)
T 3igs_A           40 AMALAAEQAGAVAVRI----------EGIDNLRMTRSLVSVPIIGIIKR-DLDESPVRITPF-----LDDVDALAQAGAA  103 (232)
T ss_dssp             HHHHHHHHTTCSEEEE----------ESHHHHHHHHTTCCSCEEEECBC-CCSSCCCCBSCS-----HHHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCeEEEE----------CCHHHHHHHHHhcCCCEEEEEee-cCCCcceEeCcc-----HHHHHHHHHcCCC
Confidence            4577889999998885          36889999999999999666675 4454  433331     2467788999999


Q ss_pred             EEEEeee
Q psy7930          98 GFVIGAL  104 (146)
Q Consensus        98 G~VfG~L  104 (146)
                      .|++++-
T Consensus       104 ~V~l~~~  110 (232)
T 3igs_A          104 IIAVDGT  110 (232)
T ss_dssp             EEEEECC
T ss_pred             EEEECcc
Confidence            9999874

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=96.77  E-value=0.0076  Score=49.95  Aligned_cols=79  Identities=20%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .+=+|++|+.-++..++.|++-|+=-..+--+|... .+.+++.+++..++||.+   -  || .. ++       +|+.
T Consensus       138 Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~---e--GG-I~-TP-------sDAa  203 (265)
T 1wv2_A          138 VMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLV---D--AG-VG-TA-------SDAA  203 (265)
T ss_dssp             EEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEE---E--SC-CC-SH-------HHHH
T ss_pred             EEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEEE---e--CC-CC-CH-------HHHH
Confidence            456899999999999999999997755543334222 488999999988999866   2  33 32 33       5677


Q ss_pred             HHHHcCCCEEEEee
Q psy7930          90 QFVESGADGFVIGA  103 (146)
Q Consensus        90 ~~~~~GadG~VfG~  103 (146)
                      .+.++|+|||++|=
T Consensus       204 ~AmeLGAdgVlVgS  217 (265)
T 1wv2_A          204 IAMELGCEAVLMNT  217 (265)
T ss_dssp             HHHHHTCSEEEESH
T ss_pred             HHHHcCCCEEEECh
Confidence            78899999999983

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=96.64  E-value=0.02  Score=46.22  Aligned_cols=100  Identities=21%  Similarity=0.088  Sum_probs=69.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcc--cCHHHHHHHHHHHHHHHHc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFV--FSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~--Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .++..|.++||+=|-+.-++..+...--+..++++++.   .++|+.++..| +|.++.  +|++++...   .+.+.++
T Consensus        96 ~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~-~G~~~~~~~s~~~i~~a---~~~a~~~  171 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFP-RGGKVVNETAPEIVAYA---ARIALEL  171 (263)
T ss_dssp             SCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECC-CSTTCCCTTCHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeC-CCCccccCCCHHHHHHH---HHHHHHc
Confidence            56788899999999998876643222223344444432   38999999999 887663  255555443   6778889


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      |||.+-+|.  +   .+.+.++++.+.+.-+|+.
T Consensus       172 GAD~vkt~~--~---~~~e~~~~~~~~~~~~pV~  200 (263)
T 1w8s_A          172 GADAMKIKY--T---GDPKTFSWAVKVAGKVPVL  200 (263)
T ss_dssp             TCSEEEEEC--C---SSHHHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEcC--C---CCHHHHHHHHHhCCCCeEE
Confidence            999999994  2   3788899988877333654

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.62  E-value=0.0082  Score=49.09  Aligned_cols=91  Identities=22%  Similarity=0.168  Sum_probs=63.2

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +.+.|.+++..|.+.|||.|=... -....+.|+...++.+.+.+  ++||.+-     ||  ..|.       +|++.+
T Consensus       167 vev~t~ee~~~A~~~Gad~IGv~~-r~l~~~~~dl~~~~~l~~~v~~~~pvVae-----gG--I~t~-------edv~~l  231 (272)
T 3qja_A          167 VEVHTEQEADRALKAGAKVIGVNA-RDLMTLDVDRDCFARIAPGLPSSVIRIAE-----SG--VRGT-------ADLLAY  231 (272)
T ss_dssp             EEESSHHHHHHHHHHTCSEEEEES-BCTTTCCBCTTHHHHHGGGSCTTSEEEEE-----SC--CCSH-------HHHHHH
T ss_pred             EEcCCHHHHHHHHHCCCCEEEECC-CcccccccCHHHHHHHHHhCcccCEEEEE-----CC--CCCH-------HHHHHH
Confidence            456899999999999999998874 23445567888888888876  5676542     34  1222       677888


Q ss_pred             HHcCCCEEEEee-ecCCCCcC-HHHHHHHHHH
Q psy7930          92 VESGADGFVIGA-LTGEQEID-IEFIRQLKTI  121 (146)
Q Consensus        92 ~~~GadG~VfG~-L~~dg~iD-~~~~~~Li~~  121 (146)
                      +++|+|||++|= |-...  | ..++++|+++
T Consensus       232 ~~~GadgvlVGsal~~a~--dp~~~~~~l~~~  261 (272)
T 3qja_A          232 AGAGADAVLVGEGLVTSG--DPRAAVADLVTA  261 (272)
T ss_dssp             HHTTCSEEEECHHHHTCS--CHHHHHHHHHTT
T ss_pred             HHcCCCEEEEcHHHhCCC--CHHHHHHHHHhh
Confidence            999999999993 22211  3 3456666654

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=96.58  E-value=0.0027  Score=52.02  Aligned_cols=79  Identities=18%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCCEEEec---CCCCC--------------CCCCCC--HHHHHHHHhh-CCCcEEEEEccCCCCCcccCH
Q psy7930          19 VASALAAVRGGADRLELC---AALSE--------------GGLTPT--LGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc---~~l~~--------------GGlTPS--~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .+.+...+++|||-|||-   |+.-.              .|+|..  +.+++++++. .++||++|.-- .. -|.|.-
T Consensus        35 ~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~-np-v~~~g~  112 (267)
T 3vnd_A           35 LKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYA-NL-VFANGI  112 (267)
T ss_dssp             HHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECH-HH-HHHHCH
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecC-cH-HHHhhH
Confidence            456677788999999998   22211              344442  5778888877 79999999532 00 244443


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                            .+=++.++++|+||+++.=|.
T Consensus       113 ------e~f~~~~~~aGvdgvii~Dlp  133 (267)
T 3vnd_A          113 ------DEFYTKAQAAGVDSVLIADVP  133 (267)
T ss_dssp             ------HHHHHHHHHHTCCEEEETTSC
T ss_pred             ------HHHHHHHHHcCCCEEEeCCCC
Confidence                  445778889999999986444

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.58  E-value=0.023  Score=45.15  Aligned_cols=78  Identities=22%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEec-CCCCCC--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELC-AALSEG--GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc-~~l~~G--GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +.+=+.+.|.+.+..|++.|||-|=.. .++..+  ...|.+.+++++++. ++||..     -|| . .|.       +
T Consensus       130 ~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA-----~GG-I-~t~-------~  194 (232)
T 3igs_A          130 LLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIA-----EGR-Y-NSP-------A  194 (232)
T ss_dssp             CEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEE-----ESC-C-CSH-------H
T ss_pred             CEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEE-----ECC-C-CCH-------H
Confidence            344467789999999999999998432 223222  246789999999887 888753     344 2 122       6


Q ss_pred             HHHHHHHcCCCEEEEe
Q psy7930          87 DCHQFVESGADGFVIG  102 (146)
Q Consensus        87 dI~~~~~~GadG~VfG  102 (146)
                      |+..+.++|+|||++|
T Consensus       195 d~~~~~~~GadgV~VG  210 (232)
T 3igs_A          195 LAAEAIRYGAWAVTVG  210 (232)
T ss_dssp             HHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHcCCCEEEEe
Confidence            7777889999999999

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=96.56  E-value=0.013  Score=44.82  Aligned_cols=97  Identities=19%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEec----CCCCCC-CCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELC----AALSEG-GLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc----~~l~~G-GlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .++.+-+.|.+++..|.+.|+|.|=+-    +.-..| |.+.....++++++..+ +||.+.     || =.  .     
T Consensus       117 ~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~-----GG-I~--~-----  183 (227)
T 2tps_A          117 MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGI-----GG-IT--I-----  183 (227)
T ss_dssp             SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEE-----SS-CC--T-----
T ss_pred             cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEE-----cC-CC--H-----
Confidence            466777789999999999999999862    121222 34456788998888777 887653     33 11  1     


Q ss_pred             HHHHHHHHHHcCCCEEEEee-ecCCCCcCH-HHHHHHHHHhC
Q psy7930          84 MALDCHQFVESGADGFVIGA-LTGEQEIDI-EFIRQLKTIIG  123 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~-L~~dg~iD~-~~~~~Li~~a~  123 (146)
                        +++..+.++|++||++|- +...  -|. +.++++++..+
T Consensus       184 --~nv~~~~~~Ga~gv~vgs~i~~~--~d~~~~~~~~~~~~~  221 (227)
T 2tps_A          184 --DNAAPVIQAGADGVSMISAISQA--EDPESAARKFREEIQ  221 (227)
T ss_dssp             --TTSHHHHHTTCSEEEESHHHHTS--SCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCCEEEEhHHhhcC--CCHHHHHHHHHHHHH
Confidence              357777789999999994 3222  466 78888877654

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.49  E-value=0.006  Score=46.56  Aligned_cols=65  Identities=18%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +.+..+.++|++.|+|...      +|+ ...++.+++..++|+.  |    |+++++++       ++++.+.++|+|+
T Consensus        23 ~~~~~~~~~G~~~i~l~~~------~~~~~~~i~~i~~~~~~~l~--v----g~g~~~~~-------~~i~~a~~~Gad~   83 (212)
T 2v82_A           23 AHVGAVIDAGFDAVEIPLN------SPQWEQSIPAIVDAYGDKAL--I----GAGTVLKP-------EQVDALARMGCQL   83 (212)
T ss_dssp             HHHHHHHHHTCCEEEEETT------STTHHHHHHHHHHHHTTTSE--E----EEECCCSH-------HHHHHHHHTTCCE
T ss_pred             HHHHHHHHCCCCEEEEeCC------ChhHHHHHHHHHHhCCCCeE--E----EeccccCH-------HHHHHHHHcCCCE
Confidence            4567788999999999754      243 4566666666566654  4    33466765       3688899999999


Q ss_pred             EEEee
Q psy7930          99 FVIGA  103 (146)
Q Consensus        99 ~VfG~  103 (146)
                      |++|.
T Consensus        84 V~~~~   88 (212)
T 2v82_A           84 IVTPN   88 (212)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99775

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=96.47  E-value=0.075  Score=41.18  Aligned_cols=103  Identities=11%  Similarity=-0.002  Sum_probs=70.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCccc-------C----HHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF-------S----QAEKEIMALDC   88 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y-------s----~~E~~~M~~dI   88 (146)
                      +.+..+.+.|.+-|||....   +  -+..-+++..+..++.+..+--|  .++|..       +    +.-++.+++-|
T Consensus        27 ~~l~~~~~~G~~~vEl~~~~---~--~~~~~~~~~l~~~gl~~~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~i   99 (269)
T 3ngf_A           27 ERFRLAAEAGFGGVEFLFPY---D--FDADVIARELKQHNLTQVLFNMP--PGDWAAGERGMAAISGREQEFRDNVDIAL   99 (269)
T ss_dssp             HHHHHHHHTTCSEEECSCCT---T--SCHHHHHHHHHHTTCEEEEEECC--CSCTTTTCCBCTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCc---c--CCHHHHHHHHHHcCCcEEEEecC--CCccccCCCCcCCCccHHHHHHHHHHHHH
Confidence            45667888999999998632   2  24677777777889988776656  334432       1    24567889999


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEe
Q psy7930          89 HQFVESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      +.++++|++-+|+..=.+++ .+        .+.++++.+.|+  |+.+.+|
T Consensus       100 ~~A~~lGa~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  150 (269)
T 3ngf_A          100 HYALALDCRTLHAMSGITEG-LDRKACEETFIENFRYAADKLAPHGITVLVE  150 (269)
T ss_dssp             HHHHHTTCCEEECCBCBCTT-SCHHHHHHHHHHHHHHHHHHHGGGTCEEEEC
T ss_pred             HHHHHcCCCEEEEccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence            99999999999973213333 22        345666777665  6777776

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.46  E-value=0.0082  Score=49.09  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-|...+++||+-|.+...-   +..- |...++.+++.+++||.   |    .||..++.+       +..++++||||
T Consensus        76 ~~A~~y~~~GA~~isvltd~---~~f~Gs~~~l~~ir~~v~lPvl---~----kdfiid~~q-------v~~A~~~GAD~  138 (272)
T 3qja_A           76 KLAQAYQDGGARIVSVVTEQ---RRFQGSLDDLDAVRASVSIPVL---R----KDFVVQPYQ-------IHEARAHGADM  138 (272)
T ss_dssp             HHHHHHHHTTCSEEEEECCG---GGHHHHHHHHHHHHHHCSSCEE---E----ESCCCSHHH-------HHHHHHTTCSE
T ss_pred             HHHHHHHHcCCCEEEEecCh---hhcCCCHHHHHHHHHhCCCCEE---E----CccccCHHH-------HHHHHHcCCCE
Confidence            45667788999999987531   1111 45689999999999995   2    268888763       56677899999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC--CCC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      |.+|.-+    ++.+.+++|++.++  |+.
T Consensus       139 VlLi~a~----l~~~~l~~l~~~a~~lGl~  164 (272)
T 3qja_A          139 LLLIVAA----LEQSVLVSMLDRTESLGMT  164 (272)
T ss_dssp             EEEEGGG----SCHHHHHHHHHHHHHTTCE
T ss_pred             EEEeccc----CCHHHHHHHHHHHHHCCCc
Confidence            9998532    34567888888887  444

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=96.46  E-value=0.0034  Score=48.96  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             HHHHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+-+..++++||+.|.+..-- ...|.++....++.+++..++|+.+.      | +..+.       +|++.+.+.|||
T Consensus        33 ~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~------g-gI~~~-------~~~~~~~~~Gad   98 (253)
T 1thf_D           33 VELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVG------G-GIHDF-------ETASELILRGAD   98 (253)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEE------S-SCCSH-------HHHHHHHHTTCS
T ss_pred             HHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEe------C-CCCCH-------HHHHHHHHcCCC
Confidence            345677889999999988522 12345566778898998889998763      1 22232       568888889999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +|++|...-.   |.+.+.++++..+
T Consensus        99 ~V~lg~~~l~---~p~~~~~~~~~~g  121 (253)
T 1thf_D           99 KVSINTAAVE---NPSLITQIAQTFG  121 (253)
T ss_dssp             EEEESHHHHH---CTHHHHHHHHHHC
T ss_pred             EEEEChHHHh---ChHHHHHHHHHcC
Confidence            9999975422   2345566665543

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=96.45  E-value=0.056  Score=42.11  Aligned_cols=106  Identities=11%  Similarity=-0.020  Sum_probs=70.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCH-----HHHHHHHHHHHHHHHc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ-----AEKEIMALDCHQFVES   94 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~-----~E~~~M~~dI~~~~~~   94 (146)
                      +.+..+.+.|.+-|||...-    +-....-++...+..++.+..+--| -.+++.-.+     .-++.+++-|+.++++
T Consensus        42 ~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~l~~~gl~v~~~~~~-~~~~l~~~d~~~r~~~~~~~~~~i~~a~~l  116 (287)
T 3kws_A           42 EKLDFMEKLGVVGFEPGGGG----LAGRVNEIKQALNGRNIKVSAICAG-FKGFILSTDPAIRKECMDTMKEIIAAAGEL  116 (287)
T ss_dssp             HHHHHHHHTTCCEEECBSTT----CGGGHHHHHHHHTTSSCEECEEECC-CCSCTTBSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEecCCc----hHHHHHHHHHHHHHcCCeEEEEecC-CCCcCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            44667888999999999751    2235666777777778887665444 345443322     2357888999999999


Q ss_pred             CCCEEEEeee--cCCCCc-C--------HHHHHHHHHHhC--CCCeEEe
Q psy7930          95 GADGFVIGAL--TGEQEI-D--------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        95 GadG~VfG~L--~~dg~i-D--------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      |++.+|+..-  ..++.. +        .+.++++.+.|+  |+.+.+|
T Consensus       117 Ga~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  165 (287)
T 3kws_A          117 GSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFE  165 (287)
T ss_dssp             TCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            9999998531  111111 1        456677777664  7888887

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.43  E-value=0.0049  Score=46.76  Aligned_cols=95  Identities=22%  Similarity=0.280  Sum_probs=56.6

Q ss_pred             ceeEE-EecCHHHHHHHHHcCCCEEEecCCCCC---------------CCCCCC----------------------HHHH
Q psy7930          10 TTLEV-CVDSVASALAAVRGGADRLELCAALSE---------------GGLTPT----------------------LGLY   51 (146)
Q Consensus        10 ~~lEv-cv~s~~~a~~A~~~GAdRIELc~~l~~---------------GGlTPS----------------------~g~i   51 (146)
                      .++.+ .+.|++++..|.+.|||-| +...+..               |..||+                      ...+
T Consensus        63 ~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~  141 (205)
T 1wa3_A           63 AIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFV  141 (205)
T ss_dssp             CEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             cEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHH
Confidence            44555 5678999999999999999 6554430               112232                      2344


Q ss_pred             HHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee-ecCCCC---cCHHHHHHHHHHh
Q psy7930          52 RVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA-LTGEQE---IDIEFIRQLKTII  122 (146)
Q Consensus        52 ~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~---iD~~~~~~Li~~a  122 (146)
                      +++++.. ++||.    + -|| -  +.       +++..+.++|+|||++|- +.. +.   + .++++++++..
T Consensus       142 ~~l~~~~~~~pvi----a-~GG-I--~~-------~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~-~~~~~~~~~~~  200 (205)
T 1wa3_A          142 KAMKGPFPNVKFV----P-TGG-V--NL-------DNVCEWFKAGVLAVGVGSALVK-GTPDEV-REKAKAFVEKI  200 (205)
T ss_dssp             HHHHTTCTTCEEE----E-BSS-C--CT-------TTHHHHHHHTCSCEEECHHHHC-SCHHHH-HHHHHHHHHHH
T ss_pred             HHHHHhCCCCcEE----E-cCC-C--CH-------HHHHHHHHCCCCEEEECccccC-CCHHHH-HHHHHHHHHHH
Confidence            4444544 45543    2 344 2  11       467888899999999984 443 32   2 45555665543

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=96.37  E-value=0.025  Score=46.05  Aligned_cols=72  Identities=19%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             EecCHHHHHHHHHcCCCEE-Eec----CCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRL-ELC----AALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRI-ELc----~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      -++..+-+..++++||+-| +||    ..-..+|  +-.+...++.+++.+++|+.+=+|+   | |          ..+
T Consensus        27 ~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~---g-~----------~~~   92 (305)
T 2nv1_A           27 DVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARI---G-H----------IVE   92 (305)
T ss_dssp             EESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECT---T-C----------HHH
T ss_pred             cCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccc---c-c----------hHH
Confidence            4577889999999999999 776    2223455  5557899999999999999877776   2 2          245


Q ss_pred             HHHHHHcCCCEEE
Q psy7930          88 CHQFVESGADGFV  100 (146)
Q Consensus        88 I~~~~~~GadG~V  100 (146)
                      ++.+.++|||+|+
T Consensus        93 ~~~~~a~GAd~V~  105 (305)
T 2nv1_A           93 ARVLEAMGVDYID  105 (305)
T ss_dssp             HHHHHHHTCSEEE
T ss_pred             HHHHHHCCCCEEE
Confidence            6677789999997

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=96.37  E-value=0.014  Score=47.78  Aligned_cols=104  Identities=23%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      .-+.+.+++..+++.|+|-|-+ .+...||.+     |+..+++++++.+++||.+-     || .. +.       +|+
T Consensus       123 ~~v~t~~~a~~~~~~GaD~i~v-~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaa-----GG-I~-~~-------~~v  187 (328)
T 2gjl_A          123 HKCTAVRHALKAERLGVDAVSI-DGFECAGHPGEDDIPGLVLLPAAANRLRVPIIAS-----GG-FA-DG-------RGL  187 (328)
T ss_dssp             EEESSHHHHHHHHHTTCSEEEE-ECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEE-----SS-CC-SH-------HHH
T ss_pred             eeCCCHHHHHHHHHcCCCEEEE-ECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEE-----CC-CC-CH-------HHH
Confidence            4578999999999999999986 344446542     67889999998889998542     34 22 22       356


Q ss_pred             HHHHHcCCCEEEEee--e-cCCCCcCHHHHHHHHHHhCCCCeEEeecc
Q psy7930          89 HQFVESGADGFVIGA--L-TGEQEIDIEFIRQLKTIIGDRPITFHRAF  133 (146)
Q Consensus        89 ~~~~~~GadG~VfG~--L-~~dg~iD~~~~~~Li~~a~~~~vtFHRAF  133 (146)
                      ..+.++|||||++|=  + +++-..... .++.+..+..-....-+.|
T Consensus       188 ~~al~~GAdgV~vGs~~~~~~e~~~~~~-~k~~~~~~~~~~~~~~~~~  234 (328)
T 2gjl_A          188 VAALALGADAINMGTRFLATRECPIHPA-VKAAIRAADERSTDLIMRS  234 (328)
T ss_dssp             HHHHHHTCSEEEESHHHHTSSSSCSCHH-HHHHHHHCCTTCEEEECGG
T ss_pred             HHHHHcCCCEEEECHHHHcCccccccHH-HHHHHHhcccccEEEeecc
Confidence            666678999999992  2 233334443 4444444554454444444

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=96.32  E-value=0.05  Score=45.46  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             ceeEEEecCHH----HHHHHHHcCCCEEEecCCCC--------CCC-C--CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930          10 TTLEVCVDSVA----SALAAVRGGADRLELCAALS--------EGG-L--TP--TLGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus        10 ~~lEvcv~s~~----~a~~A~~~GAdRIELc~~l~--------~GG-l--TP--S~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      +.+.++..+++    .+..+++.|+|-|||+.+-.        -|| +  .|  -..+++.+++.+++||.|=||+ -..
T Consensus        60 ~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~-g~~  138 (350)
T 3b0p_A           60 IALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL-GLE  138 (350)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES-CBT
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec-CcC
Confidence            45666665554    34556678999999986411        111 1  11  1235566667779999998898 322


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC----C-------CcCHHHHHHHHHHhCCCCeE
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE----Q-------EIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d----g-------~iD~~~~~~Li~~a~~~~vt  128 (146)
                      ++    ...+...+-++.+.+.|+|+|++-.-+..    |       ..|.+.++++.+...++|+.
T Consensus       139 ~~----~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVi  201 (350)
T 3b0p_A          139 GK----ETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFV  201 (350)
T ss_dssp             TC----CCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEE
T ss_pred             cc----ccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEE
Confidence            22    12334556678888999999998543321    1       25788888888776455554

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=96.32  E-value=0.029  Score=43.34  Aligned_cols=91  Identities=18%  Similarity=0.272  Sum_probs=60.7

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEE-ecCCCCCCC---CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLE-LCAALSEGG---LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIE-Lc~~l~~GG---lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +=+-+.+++++..|.+.|||.|- ++.....|.   ..|.+.+++++++. ++||.+     -|| - -|.       +|
T Consensus       136 v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~-~ipvia-----~GG-I-~s~-------~~  200 (234)
T 1yxy_A          136 LMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIA-----EGK-I-HSP-------EE  200 (234)
T ss_dssp             EEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT-TCCEEE-----ESC-C-CSH-------HH
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC-CCCEEE-----ECC-C-CCH-------HH
Confidence            33445789999999999999994 233332222   34668889999887 888765     344 1 122       57


Q ss_pred             HHHHHHcCCCEEEEee-ecCCCCcCHHHHHHHHHH
Q psy7930          88 CHQFVESGADGFVIGA-LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        88 I~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~  121 (146)
                      +..+.++|||||++|= |..    -....++|.++
T Consensus       201 ~~~~~~~Gad~v~vGsal~~----p~~~~~~l~~~  231 (234)
T 1yxy_A          201 AKKINDLGVAGIVVGGAITR----PKEIAERFIEA  231 (234)
T ss_dssp             HHHHHTTCCSEEEECHHHHC----HHHHHHHHHHH
T ss_pred             HHHHHHCCCCEEEEchHHhC----hHHHHHHHHHH
Confidence            7778889999999993 332    34555666554

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.31  E-value=0.019  Score=47.69  Aligned_cols=79  Identities=19%  Similarity=0.128  Sum_probs=57.3

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCC--------CCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAAL--------SEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l--------~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      +++.=.+.+.++|..|++.|||.|-+-..-        ..|+-+|  +...+.++++.+++||..-     || ....  
T Consensus       151 ~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~-----GG-I~~g--  222 (336)
T 1ypf_A          151 FVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIAD-----GG-IRTN--  222 (336)
T ss_dssp             EEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEE-----SC-CCST--
T ss_pred             EEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEe-----CC-CCCH--
Confidence            344445789999999999999999994321        0223346  6788888888889998652     33 2222  


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          80 EKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                            .|+..+..+|||+|.+|
T Consensus       223 ------~Dv~kalalGAdaV~iG  239 (336)
T 1ypf_A          223 ------GDVAKSIRFGATMVMIG  239 (336)
T ss_dssp             ------HHHHHHHHTTCSEEEES
T ss_pred             ------HHHHHHHHcCCCEEEeC
Confidence                  67888888999999999

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=96.27  E-value=0.025  Score=43.38  Aligned_cols=98  Identities=19%  Similarity=0.264  Sum_probs=64.6

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCC----CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAAL----SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l----~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..++-+.+.|.+++..|.+.|||.|=+-.-.    ..|+.+.+...++++++..++||.+     -|| -  |.      
T Consensus       110 ~~~ig~sv~t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia-----~GG-I--~~------  175 (221)
T 1yad_A          110 HLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIA-----IGG-M--TP------  175 (221)
T ss_dssp             TCEEEEEECSHHHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEE-----ESS-C--CG------
T ss_pred             CCEEEEEcCCHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEE-----ECC-C--CH------
Confidence            4556678889999999999999999663311    1122222456788887777889755     255 2  32      


Q ss_pred             HHHHHHHHHcCCCEEEEee-ecCCCCcC-HHHHHHHHHHhC
Q psy7930          85 ALDCHQFVESGADGFVIGA-LTGEQEID-IEFIRQLKTIIG  123 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~-L~~dg~iD-~~~~~~Li~~a~  123 (146)
                       +++..+.+.|++||++|= +...  =| .+.++++++..+
T Consensus       176 -~nv~~~~~~Ga~gv~vgs~i~~~--~d~~~~~~~~~~~~~  213 (221)
T 1yad_A          176 -DRLRDVKQAGADGIAVMSGIFSS--AEPLEAARRYSRKLK  213 (221)
T ss_dssp             -GGHHHHHHTTCSEEEESHHHHTS--SSHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCEEEEhHHhhCC--CCHHHHHHHHHHHHH
Confidence             467778889999999983 2211  24 677777776553

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=96.26  E-value=0.011  Score=48.87  Aligned_cols=79  Identities=30%  Similarity=0.316  Sum_probs=59.5

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      .++||-|+|++++..|.+.|||.|=|=.        ++...++++++.+  ++|+.+     -|| ..         .+.
T Consensus       197 ~~IgVev~t~eea~eA~~aGaD~I~ld~--------~~~~~~k~av~~v~~~ipi~A-----sGG-It---------~en  253 (286)
T 1x1o_A          197 LKVEVEVRSLEELEEALEAGADLILLDN--------FPLEALREAVRRVGGRVPLEA-----SGN-MT---------LER  253 (286)
T ss_dssp             SCEEEEESSHHHHHHHHHHTCSEEEEES--------CCHHHHHHHHHHHTTSSCEEE-----ESS-CC---------HHH
T ss_pred             CEEEEEeCCHHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhCCCCeEEE-----EcC-CC---------HHH
Confidence            5789999999999999999999986643        3556677777765  567654     355 22         467


Q ss_pred             HHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          88 CHQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      |..+.+.|+|+|.+|.++.+ ..+|
T Consensus       254 i~~~a~tGvD~IsVgs~~~~a~~~D  278 (286)
T 1x1o_A          254 AKAAAEAGVDYVSVGALTHSAKALD  278 (286)
T ss_dssp             HHHHHHHTCSEEECTHHHHSCCCCC
T ss_pred             HHHHHHcCCCEEEEcHHHcCCCcee
Confidence            88999999999999997754 3344

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=96.26  E-value=0.0082  Score=50.07  Aligned_cols=77  Identities=19%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||-|+|++++..|.++|||.|=|= +       .|.+.++++.+..+-  ++.|-. .||= .         .+.|+
T Consensus       199 ~~IeVEv~tl~ea~eAl~aGaD~I~LD-n-------~~~~~l~~av~~~~~--~v~iea-SGGI-t---------~~~i~  257 (287)
T 3tqv_A          199 KVVEVEVTNLDELNQAIAAKADIVMLD-N-------FSGEDIDIAVSIARG--KVALEV-SGNI-D---------RNSIV  257 (287)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEEEE-S-------CCHHHHHHHHHHHTT--TCEEEE-ESSC-C---------TTTHH
T ss_pred             CcEEEEeCCHHHHHHHHHcCCCEEEEc-C-------CCHHHHHHHHHhhcC--CceEEE-ECCC-C---------HHHHH
Confidence            479999999999999999999999883 2       667889988876531  233444 4552 1         25678


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|.|.+|.||.+
T Consensus       258 ~~a~tGVD~IsvGalt~s  275 (287)
T 3tqv_A          258 AIAKTGVDFISVGAITKH  275 (287)
T ss_dssp             HHHTTTCSEEECSHHHHS
T ss_pred             HHHHcCCCEEEEChhhcC
Confidence            889999999999999854

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=96.22  E-value=0.045  Score=42.24  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC--CCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA--GFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R--~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+.++.++|++-|++.          +...++.+++.+++|+...+|. .  ++.+.-++     =.++++.+.++|+|
T Consensus        40 ~~a~~~~~~G~~~i~~~----------~~~~i~~i~~~~~~p~i~~~~~-~~~~~~~~i~~-----~~~~i~~~~~~Gad  103 (234)
T 1yxy_A           40 LMAKAAQEAGAVGIRAN----------SVRDIKEIQAITDLPIIGIIKK-DYPPQEPFITA-----TMTEVDQLAALNIA  103 (234)
T ss_dssp             HHHHHHHHHTCSEEEEE----------SHHHHHHHHTTCCSCEEEECBC-CCTTSCCCBSC-----SHHHHHHHHTTTCS
T ss_pred             HHHHHHHHCCCcEeecC----------CHHHHHHHHHhCCCCEEeeEcC-CCCccccccCC-----hHHHHHHHHHcCCC
Confidence            45677889999999874          4578999999999999666664 2  22232221     12457778999999


Q ss_pred             EEEEeeecC---CCCcCHHHHHHHHHHhCCCCeE
Q psy7930          98 GFVIGALTG---EQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        98 G~VfG~L~~---dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      .|.++.-..   +|....+.++++.+...++++.
T Consensus       104 ~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~  137 (234)
T 1yxy_A          104 VIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLM  137 (234)
T ss_dssp             EEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred             EEEEcccccCCCCCccHHHHHHHHHHhCCCCeEE
Confidence            999998642   2222245565555554455543

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=96.20  E-value=0.093  Score=42.01  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             HHHHHHHcCCCEEEecCC-CC---CCCCCC------CHHHHHHHHhhCCCcEEEEEccCCC-CCcccC--HHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAA-LS---EGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAG-FDFVFS--QAEKEIMALD   87 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~-l~---~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~-gdF~Ys--~~E~~~M~~d   87 (146)
                      .+..|.+.|.+-|||... ..   ..|.+|      ....++...+..++.+..+--| -. .+|.-.  +.-++.+++-
T Consensus        41 ~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~  119 (305)
T 3obe_A           41 GLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSHLT-PSLREYTKENMPKFDEFWKKA  119 (305)
T ss_dssp             HHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEEEBCC-CSCCCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEEeecc-ccccccchhhHHHHHHHHHHH
Confidence            345788899999999852 11   235544      4667777777889988766444 21 111111  3447789999


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcC-------HHHHHHHHHHhC--CCCeEEe
Q psy7930          88 CHQFVESGADGFVIGALTGEQEID-------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD-------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      |+.++++|++-+|++...+.  .+       .+.++++.+.|+  |+.+.+|
T Consensus       120 i~~A~~lG~~~v~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  169 (305)
T 3obe_A          120 TDIHAELGVSCMVQPSLPRI--ENEDDAKVVSEIFNRAGEITKKAGILWGYH  169 (305)
T ss_dssp             HHHHHHHTCSEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             HHHHHHcCCCEEEeCCCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence            99999999999998754332  22       245566666665  6666665

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=96.19  E-value=0.012  Score=45.60  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=58.8

Q ss_pred             cCHHHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +-.+-+..++++||+.|.+.. .-..+|..+. ..++++++.+++|+.+       +++..+.       ++++.+.++|
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v-------~ggi~~~-------~~~~~~l~~G   96 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVEL-------SGGIRDD-------ESLAAALATG   96 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEE-------ESSCCSH-------HHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEE-------ECCCCCH-------HHHHHHHHcC
Confidence            344667788899999999974 1122333333 9999999999999865       2244443       3477778899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||+|++|.-.-   -|.+.+.++++..
T Consensus        97 ad~V~lg~~~l---~~p~~~~~~~~~~  120 (244)
T 2y88_A           97 CARVNVGTAAL---ENPQWCARVIGEH  120 (244)
T ss_dssp             CSEEEECHHHH---HCHHHHHHHHHHH
T ss_pred             CCEEEECchHh---hChHHHHHHHHHc
Confidence            99999997321   1245566666554

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=96.16  E-value=0.007  Score=50.23  Aligned_cols=75  Identities=28%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..+||-|+|++++..|.+.|||.|=|=.        .+...++++++.+     ++|+.+     -|| ..         
T Consensus       194 ~~I~VEV~tleea~eA~~aGaD~I~LDn--------~~~e~l~~av~~l~~~~~~v~ieA-----SGG-It---------  250 (285)
T 1o4u_A          194 TKIEVEVENLEDALRAVEAGADIVMLDN--------LSPEEVKDISRRIKDINPNVIVEV-----SGG-IT---------  250 (285)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEEEES--------CCHHHHHHHHHHHHHHCTTSEEEE-----EEC-CC---------
T ss_pred             ceEEEEeCCHHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCCCceEEE-----ECC-CC---------
Confidence            4678889999999999999999986644        4667777777665     444433     233 32         


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCC
Q psy7930          85 ALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      .+.|+.+.+.|+|+|++|.++-+
T Consensus       251 ~eni~~~a~tGVD~IsvGslt~s  273 (285)
T 1o4u_A          251 EENVSLYDFETVDVISSSRLTLQ  273 (285)
T ss_dssp             TTTGGGGCCTTCCEEEEGGGTSS
T ss_pred             HHHHHHHHHcCCCEEEEeHHHcC
Confidence            25678888999999999998764

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=96.15  E-value=0.0083  Score=50.78  Aligned_cols=77  Identities=23%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||-|+|++++..|.+.|||.|=|= +       .+.+.++++++.++-  ++.|-. .|| -.         .+.|+
T Consensus       232 ~kIeVEVdtldea~eAl~aGaD~I~LD-n-------~~~~~l~~av~~l~~--~v~iea-SGG-It---------~~~I~  290 (320)
T 3paj_A          232 KPVEVETETLAELEEAISAGADIIMLD-N-------FSLEMMREAVKINAG--RAALEN-SGN-IT---------LDNLK  290 (320)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEEEE-S-------CCHHHHHHHHHHHTT--SSEEEE-ESS-CC---------HHHHH
T ss_pred             CeEEEEECCHHHHHHHHHcCCCEEEEC-C-------CCHHHHHHHHHHhCC--CCeEEE-ECC-CC---------HHHHH
Confidence            378999999999999999999999883 3       467889988886531  234444 455 33         46788


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|+|.+|.|+.+
T Consensus       291 ~~a~tGVD~isvGalt~s  308 (320)
T 3paj_A          291 ECAETGVDYISVGALTKH  308 (320)
T ss_dssp             HHHTTTCSEEECTHHHHS
T ss_pred             HHHHcCCCEEEECceecC
Confidence            889999999999999854

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=96.10  E-value=0.0094  Score=46.34  Aligned_cols=87  Identities=25%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+-+..++++|||.|.+.+--..| |..+....++++++.+++||.++=       +.-+.       ++++.+.++|||
T Consensus        34 ~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~G-------gi~~~-------~~~~~~~~~Gad   99 (252)
T 1ka9_F           34 VEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTVGG-------GVRSL-------EDARKLLLSGAD   99 (252)
T ss_dssp             HHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEES-------SCCSH-------HHHHHHHHHTCS
T ss_pred             HHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEEC-------CcCCH-------HHHHHHHHcCCC
Confidence            455677889999999887422111 333456778888888899997742       22232       478888889999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||++|...-.   |.+.++++.+..
T Consensus       100 ~V~lg~~~l~---~p~~~~~~~~~~  121 (252)
T 1ka9_F          100 KVSVNSAAVR---RPELIRELADHF  121 (252)
T ss_dssp             EEEECHHHHH---CTHHHHHHHHHH
T ss_pred             EEEEChHHHh---CcHHHHHHHHHc
Confidence            9999975422   123455555554

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=96.07  E-value=0.033  Score=44.73  Aligned_cols=97  Identities=25%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC---CC-CCCHHHHHHHHhh--CCCcEEEEEccCCCCCcccCHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEG---GL-TPTLGLYRVIKRL--VLVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G---Gl-TPS~g~i~~~~~~--~~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      ..++-+.+.|.+++..|.+.|||-|=+..-....   +. ..+...++.+++.  .++||++.     ||=   +.    
T Consensus       135 ~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAi-----GGI---~~----  202 (243)
T 3o63_A          135 DTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAI-----GGI---NA----  202 (243)
T ss_dssp             TCEEEEEECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEE-----SSC---CT----
T ss_pred             CCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEe-----cCC---CH----
Confidence            4567778899999999999999999885422211   11 2357788888876  48898775     441   21    


Q ss_pred             HHHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          83 IMALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                         +++..++++|++||++| ++..... -..++++|.+.
T Consensus       203 ---~ni~~~~~aGa~gvav~sai~~a~d-p~~a~~~l~~~  238 (243)
T 3o63_A          203 ---QRLPAVLDAGARRIVVVRAITSADD-PRAAAEQLRSA  238 (243)
T ss_dssp             ---TTHHHHHHTTCCCEEESHHHHTCSS-HHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCEEEEeHHHhCCCC-HHHHHHHHHHH
Confidence               47788899999999986 3443221 13445555543

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=96.06  E-value=0.027  Score=45.54  Aligned_cols=82  Identities=11%  Similarity=-0.029  Sum_probs=53.3

Q ss_pred             eeEEEecCHHH----HHHHHHcCCC-EEEecCC--CCCC----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          11 TLEVCVDSVAS----ALAAVRGGAD-RLELCAA--LSEG----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        11 ~lEvcv~s~~~----a~~A~~~GAd-RIELc~~--l~~G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      ...+.-.++++    +..+.+.|+| -|||+-+  ...|    |-+|.  ..+++.+++.+++||.|.|+| -     ++
T Consensus        97 ~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~-~-----~~  170 (311)
T 1jub_A           97 FFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPP-Y-----FD  170 (311)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECC-C-----CS
T ss_pred             EEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECC-C-----CC
Confidence            34455455544    4455678999 9999642  1122    22332  457777777789999999999 2     25


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      .+|+.   +=.+.+.++|+|++++
T Consensus       171 ~~~~~---~~a~~~~~~G~d~i~v  191 (311)
T 1jub_A          171 LVHFD---IMAEILNQFPLTYVNS  191 (311)
T ss_dssp             HHHHH---HHHHHHTTSCCCEEEE
T ss_pred             HHHHH---HHHHHHHHcCCcEEEe
Confidence            55543   3356778899999986

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=95.98  E-value=0.028  Score=46.44  Aligned_cols=103  Identities=22%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      +.+.+.+.+..+++.|+|-|=+-. ...||.   .|+..+++++++.+++||.+     -|| .. |.       +|+..
T Consensus       129 ~~v~s~~~a~~a~~~GaD~i~v~g-~~~GG~~G~~~~~~ll~~i~~~~~iPvia-----aGG-I~-~~-------~dv~~  193 (326)
T 3bo9_A          129 PVVASDSLARMVERAGADAVIAEG-MESGGHIGEVTTFVLVNKVSRSVNIPVIA-----AGG-IA-DG-------RGMAA  193 (326)
T ss_dssp             EEESSHHHHHHHHHTTCSCEEEEC-TTSSEECCSSCHHHHHHHHHHHCSSCEEE-----ESS-CC-SH-------HHHHH
T ss_pred             EEcCCHHHHHHHHHcCCCEEEEEC-CCCCccCCCccHHHHHHHHHHHcCCCEEE-----ECC-CC-CH-------HHHHH
Confidence            456899999999999999987743 234554   47889999999888999754     244 22 23       45666


Q ss_pred             HHHcCCCEEEEee---ecCCCCcCHHHHHHHHHHhCCCCeEEeec
Q psy7930          91 FVESGADGFVIGA---LTGEQEIDIEFIRQLKTIIGDRPITFHRA  132 (146)
Q Consensus        91 ~~~~GadG~VfG~---L~~dg~iD~~~~~~Li~~a~~~~vtFHRA  132 (146)
                      +.++||+||.+|=   .+++-...... ++.+-.+..-..+.-++
T Consensus       194 al~~GA~gV~vGs~~~~~~e~~~~~~~-k~~~~~~~~~~~~~~~~  237 (326)
T 3bo9_A          194 AFALGAEAVQMGTRFVASVESDVHPVY-KEKIVKASIRDTVVTGA  237 (326)
T ss_dssp             HHHHTCSEEEESHHHHTBSSCCSCHHH-HHHHHHCCTTCEEEECT
T ss_pred             HHHhCCCEEEechHHHcCccccccHHH-HHHHHhcccccEEEecc
Confidence            6678999999992   24444455544 44443444444444344

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=95.98  E-value=0.031  Score=46.01  Aligned_cols=106  Identities=21%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC---CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSEGGL---TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl---TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +=+-+.+.+.+..+++.|+|-|-+-+. ..||.   .|+..+++++++.+++||.+-     || .. +.       +|+
T Consensus       113 v~~~v~~~~~a~~~~~~GaD~i~v~g~-~~GG~~g~~~~~~ll~~i~~~~~iPViaa-----GG-I~-~~-------~~~  177 (332)
T 2z6i_A          113 VIPVVPSVALAKRMEKIGADAVIAEGM-EAGGHIGKLTTMTLVRQVATAISIPVIAA-----GG-IA-DG-------EGA  177 (332)
T ss_dssp             EEEEESSHHHHHHHHHTTCSCEEEECT-TSSEECCSSCHHHHHHHHHHHCSSCEEEE-----SS-CC-SH-------HHH
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEEECC-CCCCCCCCccHHHHHHHHHHhcCCCEEEE-----CC-CC-CH-------HHH
Confidence            335679999999999999999988433 44654   567889999999899997542     44 22 23       356


Q ss_pred             HHHHHcCCCEEEEee--e-cCCCCcCHHHHHHHHHHhCCCCeEEeecc
Q psy7930          89 HQFVESGADGFVIGA--L-TGEQEIDIEFIRQLKTIIGDRPITFHRAF  133 (146)
Q Consensus        89 ~~~~~~GadG~VfG~--L-~~dg~iD~~~~~~Li~~a~~~~vtFHRAF  133 (146)
                      ..+.++|||||.+|=  + +++-... +..++.+..++.-.++.-++|
T Consensus       178 ~~al~~GAdgV~vGs~~l~~~e~~~~-~~~k~~~~~~~~~d~~~~~~~  224 (332)
T 2z6i_A          178 AAGFMLGAEAVQVGTRFVVAKESNAH-PNYKEKILKARDIDTTISAQH  224 (332)
T ss_dssp             HHHHHTTCSEEEECHHHHTBTTCCSC-HHHHHHHHHCCTTCEEEESGG
T ss_pred             HHHHHcCCCEEEecHHHhcCcccccc-HHHHHHHHhCCCcCEEEECCc
Confidence            666678999999992  2 3443333 344555555655555554544

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=95.97  E-value=0.1  Score=43.17  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhCCCcEEEEEccCCCCCc--
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLVLVPVFVMIRVRAGFDF--   74 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP~R~gdF--   74 (146)
                      +.|..|.++|+|-|||..+-                 .-||. .      ...+++.+++.+++||.|=|+| .  +|  
T Consensus       148 ~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGs-lenr~r~~~eiv~avr~~v~~pv~vris~-~--~~~~  223 (338)
T 1z41_A          148 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGS-PENRYRFLREIIDEVKQVWDGPLFVRVSA-S--DYTD  223 (338)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHCCSCEEEEEEC-C--CCST
T ss_pred             HHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcc-hhhhHHHHHHHHHHHHHHcCCcEEEEecC-c--ccCC
Confidence            66788899999999997531                 12331 1      2567888888888898777777 2  33  


Q ss_pred             -ccCHHHHHHHHHHHHHHHHcCCCEEEEeeecC------CC-CcCHHHHHHHHHHh
Q psy7930          75 -VFSQAEKEIMALDCHQFVESGADGFVIGALTG------EQ-EIDIEFIRQLKTII  122 (146)
Q Consensus        75 -~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------dg-~iD~~~~~~Li~~a  122 (146)
                       -++.+|   ..+=++.+.+.|+|.+.+...+.      .+ ..+.+.++++.+..
T Consensus       224 ~g~~~~~---~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~  276 (338)
T 1z41_A          224 KGLDIAD---HIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA  276 (338)
T ss_dssp             TSCCHHH---HHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH
T ss_pred             CCCCHHH---HHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC
Confidence             234444   44556778899999999876532      12 24667777777665

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=95.96  E-value=0.01  Score=45.29  Aligned_cols=73  Identities=23%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCC--CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEG--GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..+-+..++++|+|.|++.. +...  +..+....++.+++.+++|+.+.-.       ..+.       ++++.+.++
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~~-~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~-------i~~~-------~~~~~~~~~   98 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAILD-ITAAPEGRATFIDSVKRVAEAVSIPVLVGGG-------VRSL-------EDATTLFRA   98 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEE-CCCCTTTHHHHHHHHHHHHHHCSSCEEEESS-------CCSH-------HHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCEEEEEe-CCccccCCcccHHHHHHHHHhcCCCEEEECC-------CCCH-------HHHHHHHHc
Confidence            456778888999999999974 2222  2234567888888888999876433       3333       346677788


Q ss_pred             CCCEEEEeee
Q psy7930          95 GADGFVIGAL  104 (146)
Q Consensus        95 GadG~VfG~L  104 (146)
                      |||++.+|..
T Consensus        99 Gad~V~i~~~  108 (253)
T 1h5y_A           99 GADKVSVNTA  108 (253)
T ss_dssp             TCSEEEESHH
T ss_pred             CCCEEEEChH
Confidence            9999999953

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=95.95  E-value=0.047  Score=45.50  Aligned_cols=107  Identities=24%  Similarity=0.220  Sum_probs=68.4

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-------------C-HHHHHHHHhhCCCcEEEEEccCCCCCcccC
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-------------T-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-------------S-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys   77 (146)
                      +=+.+.|++++..+++.|+|-|-+- +...||.+.             + ..+++++++.+++||.+     -|| . .+
T Consensus       148 v~~~v~t~~~a~~a~~~GaD~i~v~-g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPVia-----aGG-I-~~  219 (369)
T 3bw2_A          148 TLVTATTPEEARAVEAAGADAVIAQ-GVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA-----AGG-I-MR  219 (369)
T ss_dssp             EEEEESSHHHHHHHHHTTCSEEEEE-CTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEE-----ESS-C-CS
T ss_pred             EEEECCCHHHHHHHHHcCCCEEEEe-CCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEE-----ECC-C-CC
Confidence            3345689999999999999999873 233455431             2 67888888888999754     244 2 23


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEee--e-cCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIGA--L-TGEQEIDIEFIRQLKTIIGDRPITFHRAFD  134 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG~--L-~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD  134 (146)
                      .       +++..+.++|||||++|=  + +++-... +..++.+..|..-..++.+.|.
T Consensus       220 ~-------~~~~~~l~~GAd~V~vGs~~~~~~e~~~~-~~~k~~i~~~~~~~~~~~~~~~  271 (369)
T 3bw2_A          220 G-------GQIAAVLAAGADAAQLGTAFLATDESGAP-GPHKRALTDPLFARTRLTRAFT  271 (369)
T ss_dssp             H-------HHHHHHHHTTCSEEEESHHHHTSTTCCCC-HHHHHHTTCGGGCCEEEESTTT
T ss_pred             H-------HHHHHHHHcCCCEEEEChHHhCCcccCcc-HHHHHHHHhCcCCCEEEEeccC
Confidence            3       456666679999999982  2 3343333 4445555444444455555554

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=95.95  E-value=0.021  Score=43.48  Aligned_cols=91  Identities=16%  Similarity=0.268  Sum_probs=60.5

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +++  +.|++++..|.+.|+|.|=+..    ++ ..+...++++++..+  +||.+.     || -.  .       +++
T Consensus       105 ~~g--~~t~~e~~~a~~~G~d~v~v~~----t~-~~g~~~~~~l~~~~~~~ipvia~-----GG-I~--~-------~~i  162 (212)
T 2v82_A          105 CPG--CATATEAFTALEAGAQALKIFP----SS-AFGPQYIKALKAVLPSDIAVFAV-----GG-VT--P-------ENL  162 (212)
T ss_dssp             ECE--ECSHHHHHHHHHTTCSEEEETT----HH-HHCHHHHHHHHTTSCTTCEEEEE-----SS-CC--T-------TTH
T ss_pred             Eee--cCCHHHHHHHHHCCCCEEEEec----CC-CCCHHHHHHHHHhccCCCeEEEe-----CC-CC--H-------HHH
Confidence            445  6899999999999999998732    11 124678888887765  776542     44 21  1       477


Q ss_pred             HHHHHcCCCEEEEe-eecCC-CCc-C-HHHHHHHHHHhC
Q psy7930          89 HQFVESGADGFVIG-ALTGE-QEI-D-IEFIRQLKTIIG  123 (146)
Q Consensus        89 ~~~~~~GadG~VfG-~L~~d-g~i-D-~~~~~~Li~~a~  123 (146)
                      ..++++|++||++| .+... |.. | .+++++|.+..+
T Consensus       163 ~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~  201 (212)
T 2v82_A          163 AQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYR  201 (212)
T ss_dssp             HHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            88888999999999 55543 221 2 345566655543

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=95.94  E-value=0.078  Score=43.76  Aligned_cols=73  Identities=26%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             CHHHHHH-HHHcCCCEEEecCCCCCCCC----CCC----HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          18 SVASALA-AVRGGADRLELCAALSEGGL----TPT----LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        18 s~~~a~~-A~~~GAdRIELc~~l~~GGl----TPS----~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +.+.... +++.|||-||+.-+-.....    .|+    ...++.+++..++||.+.+.+     |.++       .+++
T Consensus       128 ~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~-----~~~~-------~~~a  195 (349)
T 1p0k_A          128 TAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVG-----FGMS-------KASA  195 (349)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEES-----SCCC-------HHHH
T ss_pred             CHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecC-----CCCC-------HHHH
Confidence            4444433 45779999999854221111    333    467888888889999998865     2344       2457


Q ss_pred             HHHHHcCCCEEEEe
Q psy7930          89 HQFVESGADGFVIG  102 (146)
Q Consensus        89 ~~~~~~GadG~VfG  102 (146)
                      +.+.++|+|+|++.
T Consensus       196 ~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          196 GKLYEAGAAAVDIG  209 (349)
T ss_dssp             HHHHHHTCSEEEEE
T ss_pred             HHHHHcCCCEEEEc
Confidence            88899999999994

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=95.92  E-value=0.28  Score=37.19  Aligned_cols=105  Identities=12%  Similarity=-0.002  Sum_probs=69.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcc------cC-----HHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFV------FS-----QAEKEIMALDC   88 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~------Ys-----~~E~~~M~~dI   88 (146)
                      +.+..+.+.|.+-|||...   .+.  +...+++..+..++.+..+=-|  .++|.      .+     +.-++.+++-|
T Consensus        19 ~~l~~~~~~G~~~vEl~~~---~~~--~~~~~~~~l~~~gl~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 1k77_A           19 ERFAAARKAGFDAVEFLFP---YNY--STLQIQKQLEQNHLTLALFNTA--PGDINAGEWGLSALPGREHEAHADIDLAL   91 (260)
T ss_dssp             GHHHHHHHHTCSEEECSCC---TTS--CHHHHHHHHHHTTCEEEEEECC--CCCGGGTCSCSTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEecCC---CCC--CHHHHHHHHHHcCCceEEEecC--CcccccccCCCCCChhHHHHHHHHHHHHH
Confidence            4556778899999999863   222  3566777777788988775445  33442      11     34578899999


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          89 HQFVESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +.++++|++-+|+..=......+        .+.++++.+.|+  |+.+.+|=
T Consensus        92 ~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~  144 (260)
T 1k77_A           92 EYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEA  144 (260)
T ss_dssp             HHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred             HHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            99999999999883211111223        345667777775  66666653

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=95.84  E-value=0.016  Score=45.06  Aligned_cols=86  Identities=16%  Similarity=0.116  Sum_probs=57.3

Q ss_pred             HHHHHHHHHcCCCEEEecC-CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCA-ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~-~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+-+..++++||+.|.+.. .-...|..+. ..++++++.+++|+.+       +++.-+.       ++++.+.++|||
T Consensus        35 ~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v-------~ggI~~~-------~~~~~~l~~Gad   99 (244)
T 1vzw_A           35 LEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVEL-------SGGIRDD-------DTLAAALATGCT   99 (244)
T ss_dssp             HHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEE-------ESSCCSH-------HHHHHHHHTTCS
T ss_pred             HHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEE-------ECCcCCH-------HHHHHHHHcCCC
Confidence            3556778899999999975 1122233344 8899999999999865       1233343       357778889999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      +|++|.-.-   -|.+.+.++++..
T Consensus       100 ~V~lg~~~l---~~p~~~~~~~~~~  121 (244)
T 1vzw_A          100 RVNLGTAAL---ETPEWVAKVIAEH  121 (244)
T ss_dssp             EEEECHHHH---HCHHHHHHHHHHH
T ss_pred             EEEECchHh---hCHHHHHHHHHHc
Confidence            999996321   1245566666653

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=95.80  E-value=0.058  Score=41.80  Aligned_cols=89  Identities=22%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+.+..+++.|++.|=.++ ....|.+  |...+++++++.+++||.+-     ||=  .+.       +|+..+++.|+
T Consensus       155 ~e~~~~~~~~G~~~i~~~~-~~~~g~~~g~~~~~i~~l~~~~~ipvia~-----GGI--~~~-------~d~~~~~~~Ga  219 (252)
T 1ka9_F          155 VEWAVKGVELGAGEILLTS-MDRDGTKEGYDLRLTRMVAEAVGVPVIAS-----GGA--GRM-------EHFLEAFQAGA  219 (252)
T ss_dssp             HHHHHHHHHHTCCEEEEEE-TTTTTTCSCCCHHHHHHHHHHCSSCEEEE-----SCC--CSH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCEEEEec-ccCCCCcCCCCHHHHHHHHHHcCCCEEEe-----CCC--CCH-------HHHHHHHHCCC
Confidence            6778999999999987764 2333433  56999999999999998652     442  222       56777778899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||+++|=-=-.+.+|.....+.+..+
T Consensus       220 dgv~vgsal~~~~~~~~~~~~~l~~~  245 (252)
T 1ka9_F          220 EAALAASVFHFGEIPIPKLKRYLAEK  245 (252)
T ss_dssp             SEEEESHHHHTTSSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            99999965556778888887776644

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=95.79  E-value=0.18  Score=40.08  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEE--ccCCCCCcccCHHHHHH----HHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMI--RVRAGFDFVFSQAEKEI----MALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMI--RP~R~gdF~Ys~~E~~~----M~~dI   88 (146)
                      +.|.+++....+.||+|+-+.+..-     -...+++++.+..+ =.+.+-|  +- ..+.++|++.=.+.    ..+-+
T Consensus        84 Irs~e~~~~~l~~GadkVii~t~a~-----~~p~li~e~~~~~g~q~iv~~iD~~~-~~~~~v~~~gw~~~~~~~~~~~~  157 (243)
T 4gj1_A           84 IRSKEEVKALLDCGVKRVVIGSMAI-----KDATLCLEILKEFGSEAIVLALDTIL-KEDYVVAVNAWQEASDKKLMEVL  157 (243)
T ss_dssp             CCCHHHHHHHHHTTCSEEEECTTTT-----TCHHHHHHHHHHHCTTTEEEEEEEEE-SSSEEEC--------CCBHHHHH
T ss_pred             cccHHHHHHHHHcCCCEEEEccccc-----cCCchHHHHHhcccCceEEEEEEEEe-CCCCEEEecCceecccchHHHHH
Confidence            3588999999999999999997532     35778877776553 2233333  33 34446665532221    34567


Q ss_pred             HHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEEe
Q psy7930          89 HQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtFH  130 (146)
                      +.+.+.|+..|++=-++.||+   +|.+.++++.+...+.|++..
T Consensus       158 ~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~~~ipvias  202 (243)
T 4gj1_A          158 DFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQAS  202 (243)
T ss_dssp             HHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhcCCCCEEEE
Confidence            788899999999999999985   899999999888777887754

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.79  E-value=0.085  Score=40.20  Aligned_cols=70  Identities=24%  Similarity=0.271  Sum_probs=49.8

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCC--CCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRA--GFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R--~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +=+..++++|++.+++.          +...++.+++.+++|+...++. .  ++.+..++.     .++++.+.+.|+|
T Consensus        27 ~~a~~~~~~Ga~~i~~~----------~~~~i~~i~~~~~~pv~~~~~~-~~~~~~~~i~~~-----~~~i~~~~~~Gad   90 (223)
T 1y0e_A           27 KMALAAYEGGAVGIRAN----------TKEDILAIKETVDLPVIGIVKR-DYDHSDVFITAT-----SKEVDELIESQCE   90 (223)
T ss_dssp             HHHHHHHHHTCSEEEEE----------SHHHHHHHHHHCCSCEEEECBC-CCTTCCCCBSCS-----HHHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCeeeccC----------CHHHHHHHHHhcCCCEEeeecc-CCCccccccCCc-----HHHHHHHHhCCCC
Confidence            44566788999999873          4688999999999999544443 2  344433321     2456778899999


Q ss_pred             EEEEeeec
Q psy7930          98 GFVIGALT  105 (146)
Q Consensus        98 G~VfG~L~  105 (146)
                      .++++...
T Consensus        91 ~v~l~~~~   98 (223)
T 1y0e_A           91 VIALDATL   98 (223)
T ss_dssp             EEEEECSC
T ss_pred             EEEEeeec
Confidence            99999754

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=95.78  E-value=0.033  Score=44.90  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCC--------------------CCCCCC------------CHHHHHHHHhhCCCcEE
Q psy7930          16 VDSVASALAAVRGGADRLELCAALS--------------------EGGLTP------------TLGLYRVIKRLVLVPVF   63 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~--------------------~GGlTP------------S~g~i~~~~~~~~ipv~   63 (146)
                      +.|++++..+.+.|||.|-....-.                    .+|+||            +...++++++..++|+.
T Consensus       132 v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi  211 (297)
T 2zbt_A          132 ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVV  211 (297)
T ss_dssp             ESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSC
T ss_pred             cCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcE
Confidence            7899999999999999985542100                    124444            45778888888888864


Q ss_pred             EEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          64 VMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        64 vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      +  =. -|| - .|.       +|+..+.++|||||++|=
T Consensus       212 ~--~a-~GG-I-~~~-------e~i~~~~~aGadgvvvGs  239 (297)
T 2zbt_A          212 N--FA-AGG-I-ATP-------ADAALMMHLGMDGVFVGS  239 (297)
T ss_dssp             E--EB-CSS-C-CSH-------HHHHHHHHTTCSEEEECG
T ss_pred             E--Ee-eCC-C-CCH-------HHHHHHHHcCCCEEEEch
Confidence            2  25 455 2 233       578888899999999993

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=95.74  E-value=0.096  Score=39.79  Aligned_cols=89  Identities=20%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ..+.+..+.+.||+.|=+.+- ..+|  ..|....++++++..++||.+     -||=.  +.       +|+..+.+.|
T Consensus       156 ~~e~~~~~~~~G~d~i~~~~~-~~~g~~~~~~~~~i~~l~~~~~~pvia-----~GGi~--~~-------~~~~~~~~~G  220 (253)
T 1h5y_A          156 AVKWAKEVEELGAGEILLTSI-DRDGTGLGYDVELIRRVADSVRIPVIA-----SGGAG--RV-------EHFYEAAAAG  220 (253)
T ss_dssp             HHHHHHHHHHHTCSEEEEEET-TTTTTCSCCCHHHHHHHHHHCSSCEEE-----ESCCC--SH-------HHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCEEEEecc-cCCCCcCcCCHHHHHHHHHhcCCCEEE-----eCCCC--CH-------HHHHHHHHcC
Confidence            456688899999999987642 2233  356788999999988888754     24422  22       4566677899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHH
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~  121 (146)
                      |||+++|=-=-.+..+.+.+.+.++.
T Consensus       221 a~~v~vgsal~~~~~~~~~~~~~l~~  246 (253)
T 1h5y_A          221 ADAVLAASLFHFRVLSIAQVKRYLKE  246 (253)
T ss_dssp             CSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999995222345777777776653

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=95.73  E-value=0.01  Score=48.42  Aligned_cols=78  Identities=23%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCC-----------------CCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930          19 VASALAAVRGGADRLELCAALS-----------------EGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~-----------------~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      .+.+...+++ ||=|||---++                 ..|+|..  +..++++++..++||.+|... . .-|.|.  
T Consensus        33 ~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~-n-~v~~~g--  107 (271)
T 1ujp_A           33 LQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYL-N-PVLAWG--  107 (271)
T ss_dssp             HHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCH-H-HHHHHC--
T ss_pred             HHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecC-c-HHHHhh--
Confidence            3455566677 99999965433                 3567765  578999998889999999433 1 123333  


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                          ..+.++.+++.|+||+++.-|.
T Consensus       108 ----~~~f~~~~~~aG~dGviv~Dl~  129 (271)
T 1ujp_A          108 ----PERFFGLFKQAGATGVILPDLP  129 (271)
T ss_dssp             ----HHHHHHHHHHHTCCEEECTTCC
T ss_pred             ----HHHHHHHHHHcCCCEEEecCCC
Confidence                3566788999999999886554

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=95.68  E-value=0.079  Score=43.99  Aligned_cols=95  Identities=18%  Similarity=0.309  Sum_probs=64.6

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCC-------------------------C-------CCCCHHHHHHHHhhCCCc
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEG-------------------------G-------LTPTLGLYRVIKRLVLVP   61 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G-------------------------G-------lTPS~g~i~~~~~~~~ip   61 (146)
                      +++.|.+++..|.+.||+-|=....-..|                         +       +.|+..+++++++..++|
T Consensus       130 v~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iP  209 (297)
T 4adt_A          130 CGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLP  209 (297)
T ss_dssp             EEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCS
T ss_pred             EEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCC
Confidence            35899999999999999987666320111                         1       267889999999988899


Q ss_pred             EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe-eecCCCCcCH-HHHHHHHHHh
Q psy7930          62 VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG-ALTGEQEIDI-EFIRQLKTII  122 (146)
Q Consensus        62 v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG-~L~~dg~iD~-~~~~~Li~~a  122 (146)
                      |.+..   -|| . .|.       +|+..+.++|||||++| .|....  |. ..+++|+++.
T Consensus       210 VivvA---~GG-I-~t~-------~dv~~~~~~GAdgVlVGsai~~a~--dp~~~~~~l~~ai  258 (297)
T 4adt_A          210 VVNFA---AGG-I-ATP-------ADAAMCMQLGMDGVFVGSGIFESE--NPQKMASSIVMAV  258 (297)
T ss_dssp             SEEEE---ESC-C-CSH-------HHHHHHHHTTCSCEEESHHHHTSS--CHHHHHHHHHHHH
T ss_pred             eEEEe---cCC-C-CCH-------HHHHHHHHcCCCEEEEhHHHHcCC--CHHHHHHHHHHHH
Confidence            75321   244 2 122       67888889999999998 333222  43 4566666654

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=95.67  E-value=0.019  Score=48.73  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.+.+++..+.+.|||.|.+-..  ....|..|+...+.++++.+++||.+     -|| .. +.       .|+..+..
T Consensus       233 v~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia-----~GG-I~-~~-------~dv~kal~  298 (380)
T 1p4c_A          233 LLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLI-----DSG-FR-RG-------SDIVKALA  298 (380)
T ss_dssp             ECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEE-----CSS-CC-SH-------HHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEE-----ECC-CC-CH-------HHHHHHHH
Confidence            47999999999999999999432  12223346788888888888887643     344 32 22       56667778


Q ss_pred             cCCCEEEEe
Q psy7930          94 SGADGFVIG  102 (146)
Q Consensus        94 ~GadG~VfG  102 (146)
                      +|||+|.+|
T Consensus       299 ~GAdaV~iG  307 (380)
T 1p4c_A          299 LGAEAVLLG  307 (380)
T ss_dssp             TTCSCEEES
T ss_pred             hCCcHhheh
Confidence            999999998

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=95.67  E-value=0.025  Score=46.37  Aligned_cols=97  Identities=16%  Similarity=0.168  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCC---C--------------CCCCCC--CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCH
Q psy7930          19 VASALAAVRGGADRLELCAAL---S--------------EGGLTP--TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l---~--------------~GGlTP--S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .+-+...+++|||=|||---.   -              ..|+|.  .+.+++++++. .++|+.+|.-- .. -|.|.-
T Consensus        37 ~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~-n~-v~~~g~  114 (271)
T 3nav_A           37 LAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYA-NL-VYARGI  114 (271)
T ss_dssp             HHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECH-HH-HHHTCH
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecC-cH-HHHHhH
Confidence            455666788999999998321   1              144554  25677888876 79999999632 00 344543


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                            .+=++.++++|+||+++.=|.    ++  ...++.+.++  ++...|
T Consensus       115 ------~~f~~~~~~aGvdGvIipDlp----~e--e~~~~~~~~~~~gl~~I~  155 (271)
T 3nav_A          115 ------DDFYQRCQKAGVDSVLIADVP----TN--ESQPFVAAAEKFGIQPIF  155 (271)
T ss_dssp             ------HHHHHHHHHHTCCEEEETTSC----GG--GCHHHHHHHHHTTCEEEE
T ss_pred             ------HHHHHHHHHCCCCEEEECCCC----HH--HHHHHHHHHHHcCCeEEE
Confidence                  344778899999999885333    32  2455555554  444433

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=95.66  E-value=0.012  Score=49.53  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=60.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=| +|       .|.+.++++.+..+-  ++.|-. .||= .         .+.|+
T Consensus       208 ~kIeVEv~tl~e~~eAl~aGaDiImL-Dn-------~s~~~l~~av~~~~~--~v~lea-SGGI-t---------~~~i~  266 (300)
T 3l0g_A          208 EYIAIECDNISQVEESLSNNVDMILL-DN-------MSISEIKKAVDIVNG--KSVLEV-SGCV-N---------IRNVR  266 (300)
T ss_dssp             CCEEEEESSHHHHHHHHHTTCSEEEE-ES-------CCHHHHHHHHHHHTT--SSEEEE-ESSC-C---------TTTHH
T ss_pred             CCEEEEECCHHHHHHHHHcCCCEEEE-CC-------CCHHHHHHHHHhhcC--ceEEEE-ECCC-C---------HHHHH
Confidence            57899999999999999999999977 33       567899988876542  344555 4552 1         35688


Q ss_pred             HHHHcCCCEEEEeeecCC
Q psy7930          90 QFVESGADGFVIGALTGE  107 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~d  107 (146)
                      .+.+.|+|.|++|.|+.+
T Consensus       267 ~~A~tGVD~IsvGalths  284 (300)
T 3l0g_A          267 NIALTGVDYISIGCITNS  284 (300)
T ss_dssp             HHHTTTCSEEECGGGTSS
T ss_pred             HHHHcCCCEEEeCccccC
Confidence            899999999999999964

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.64  E-value=0.012  Score=44.63  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=58.1

Q ss_pred             ceeE-EEecCH-HHHHHHHHcCCCEEEecCCCCCCCCC---CCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          10 TTLE-VCVDSV-ASALAAVRGGADRLELCAALSEGGLT---PTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lE-vcv~s~-~~a~~A~~~GAdRIELc~~l~~GGlT---PS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      +++| ++..++ +.+..+.+.|+|.|-+..  ..+|.+   .+...++++++.. ++||.+-     || -  +.     
T Consensus       106 ~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~--g~~g~~~~~~~~~~i~~l~~~~~~~~i~~~-----gG-I--~~-----  170 (211)
T 3f4w_A          106 VVVDMICVDDLPARVRLLEEAGADMLAVHT--GTDQQAAGRKPIDDLITMLKVRRKARIAVA-----GG-I--SS-----  170 (211)
T ss_dssp             EEEECTTCSSHHHHHHHHHHHTCCEEEEEC--CHHHHHTTCCSHHHHHHHHHHCSSCEEEEE-----SS-C--CT-----
T ss_pred             EEEEecCCCCHHHHHHHHHHcCCCEEEEcC--CCcccccCCCCHHHHHHHHHHcCCCcEEEE-----CC-C--CH-----
Confidence            3444 234454 668999999999974432  112221   2578899988876 7777542     22 2  11     


Q ss_pred             HHHHHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          84 MALDCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                        +++..+.++|+||+|+| ++..... -.+++++|.+.
T Consensus       171 --~~~~~~~~~Gad~vvvGsai~~~~d-~~~~~~~l~~~  206 (211)
T 3f4w_A          171 --QTVKDYALLGPDVVIVGSAITHAAD-PAGEARKISQV  206 (211)
T ss_dssp             --TTHHHHHTTCCSEEEECHHHHTCSS-HHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCCEEEECHHHcCCCC-HHHHHHHHHHH
Confidence              38888999999999999 4443322 13455666554

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=95.53  E-value=0.051  Score=45.58  Aligned_cols=77  Identities=23%  Similarity=0.343  Sum_probs=55.0

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecC-------------------------CCC-CC-------CCCCCHHHHHHHHhhCCC
Q psy7930          14 VCVDSVASALAAVRGGADRLELCA-------------------------ALS-EG-------GLTPTLGLYRVIKRLVLV   60 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~-------------------------~l~-~G-------GlTPS~g~i~~~~~~~~i   60 (146)
                      .=+.|+++|+.+.+.||+=|=--.                         +|. ..       =+.|++.+++++++..++
T Consensus       120 ~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~~I  199 (291)
T 3o07_A          120 CGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKL  199 (291)
T ss_dssp             EEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred             eeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHccCC
Confidence            347899999999999999988531                         221 10       136889999999999999


Q ss_pred             cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          61 PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        61 pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      ||.+.  - -||  ..|++       |+..+.++|+|||++|
T Consensus       200 PVV~I--A-nGG--I~Tpe-------dA~~~le~GaDGVmVG  229 (291)
T 3o07_A          200 PVVNF--A-AGG--VATPA-------DAALLMQLGCDGVFVG  229 (291)
T ss_dssp             SSCEE--B-CSS--CCSHH-------HHHHHHHTTCSCEEEC
T ss_pred             CEEEe--c-CCC--CCCHH-------HHHHHHHhCCCEEEEc
Confidence            98543  1 233  23344       4555567999999998

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=95.51  E-value=0.05  Score=44.67  Aligned_cols=91  Identities=19%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      |++.|.+++..|.+.|++-|=.+. -....++|+......+.+.+  ++|+..   =  +|  .+|.       +|++.+
T Consensus       174 vevh~~eEl~~A~~~ga~iIGinn-r~l~t~~~dl~~~~~L~~~ip~~~~vIa---e--sG--I~t~-------edv~~l  238 (272)
T 3tsm_A          174 IEVHDEAEMERALKLSSRLLGVNN-RNLRSFEVNLAVSERLAKMAPSDRLLVG---E--SG--IFTH-------EDCLRL  238 (272)
T ss_dssp             EEECSHHHHHHHTTSCCSEEEEEC-BCTTTCCBCTHHHHHHHHHSCTTSEEEE---E--SS--CCSH-------HHHHHH
T ss_pred             EEeCCHHHHHHHHhcCCCEEEECC-CCCccCCCChHHHHHHHHhCCCCCcEEE---E--CC--CCCH-------HHHHHH
Confidence            677999999999999999997773 23355678888888887766  344332   2  34  3344       456667


Q ss_pred             HHcCCCEEEEee-ecCCCCcCHHHHHHHHH
Q psy7930          92 VESGADGFVIGA-LTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        92 ~~~GadG~VfG~-L~~dg~iD~~~~~~Li~  120 (146)
                      +++|+|||++|= |..... -..++++|+.
T Consensus       239 ~~~Ga~gvLVG~almr~~d-~~~~~~~l~~  267 (272)
T 3tsm_A          239 EKSGIGTFLIGESLMRQHD-VAAATRALLT  267 (272)
T ss_dssp             HTTTCCEEEECHHHHTSSC-HHHHHHHHHH
T ss_pred             HHcCCCEEEEcHHHcCCcC-HHHHHHHHHh
Confidence            899999999992 333322 2345555554

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=95.47  E-value=0.092  Score=46.57  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      .+..+-+..+++.||+.| |+.+....|+  -|...+++++++.+++||..     .||  +.|.+       |++.+++
T Consensus       452 ~~~~e~a~~~~~~Ga~~i-l~t~~~~dG~~~G~d~~li~~l~~~~~iPVIa-----sGG--i~s~~-------d~~~~~~  516 (555)
T 1jvn_A          452 LGVWELTRACEALGAGEI-LLNCIDKDGSNSGYDLELIEHVKDAVKIPVIA-----SSG--AGVPE-------HFEEAFL  516 (555)
T ss_dssp             EEHHHHHHHHHHTTCCEE-EECCGGGTTTCSCCCHHHHHHHHHHCSSCEEE-----CSC--CCSHH-------HHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCEE-EEeCCCCCCCCCCCCHHHHHHHHHhCCccEEE-----ECC--CCCHH-------HHHHHHH
Confidence            345788999999999999 5555554443  37899999999999999854     365  33444       4455554


Q ss_pred             -cCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          94 -SGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        94 -~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                       .|++|+++|=.--.+.++...+++.+...
T Consensus       517 ~~G~~gvivg~a~~~~~~~~~e~~~~l~~~  546 (555)
T 1jvn_A          517 KTRADACLGAGMFHRGEFTVNDVKEYLLEH  546 (555)
T ss_dssp             HSCCSEEEESHHHHTTSCCHHHHHHHHHHT
T ss_pred             hcCChHHHHHHHHHcCCCCHHHHHHHHHHC
Confidence             79999999976667899999988877654

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=95.46  E-value=0.057  Score=42.00  Aligned_cols=86  Identities=16%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++..|.+.|||-|-+-..-..||    ...++.+++.. ++|+.    | -||= .         .+++..+.++
T Consensus       111 ~~t~~e~~~A~~~Gad~v~~fpa~~~gG----~~~lk~l~~~~~~ipvv----a-iGGI-~---------~~n~~~~l~a  171 (207)
T 2yw3_A          111 VLTPTEVERALALGLSALKFFPAEPFQG----VRVLRAYAEVFPEVRFL----P-TGGI-K---------EEHLPHYAAL  171 (207)
T ss_dssp             ECSHHHHHHHHHTTCCEEEETTTTTTTH----HHHHHHHHHHCTTCEEE----E-BSSC-C---------GGGHHHHHTC
T ss_pred             CCCHHHHHHHHHCCCCEEEEecCccccC----HHHHHHHHhhCCCCcEE----E-eCCC-C---------HHHHHHHHhC
Confidence            6789999999999999998832111223    46788888877 78864    5 5662 1         1478889999


Q ss_pred             CCCEEEEee-ecCCCCcC----HHHHHHHHHHhC
Q psy7930          95 GADGFVIGA-LTGEQEID----IEFIRQLKTIIG  123 (146)
Q Consensus        95 GadG~VfG~-L~~dg~iD----~~~~~~Li~~a~  123 (146)
                      |++|+++|- +..   =|    .++.+++++..+
T Consensus       172 Ga~~vavgSai~~---~d~~~i~~~a~~~~~~~~  202 (207)
T 2yw3_A          172 PNLLAVGGSWLLQ---GNLEAVRAKVRAAKALLS  202 (207)
T ss_dssp             SSBSCEEESGGGS---SCHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEehhhhC---CCHHHHHHHHHHHHHHhc
Confidence            999999884 665   34    344555555443

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=95.40  E-value=0.083  Score=41.68  Aligned_cols=105  Identities=15%  Similarity=-0.031  Sum_probs=70.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC---CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccC----HHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG---LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS----QAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG---lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys----~~E~~~M~~dI~~~~   92 (146)
                      +.+..|.+.|.+-|||...-. ..   .......+++..+..++.+..+- |  .++|.-+    ...++.+++.|+.++
T Consensus        40 ~~l~~a~~~G~~~vEl~~~~~-~~~~~~~~~~~~~~~~l~~~gl~i~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~A~  115 (296)
T 2g0w_A           40 KRVKVAAENGFDGIGLRAENY-VDALAAGLTDEDMLRILDEHNMKVTEVE-Y--ITQWGTAEDRTAEQQKKEQTTFHMAR  115 (296)
T ss_dssp             HHHHHHHHTTCSEEEEEHHHH-HHHHHTTCCHHHHHHHHHHTTCEEEEEE-C--BCCCSSTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCHHHH-HHHHhcCCcHHHHHHHHHHcCCceEeeh-h--hhccccCChHHHHHHHHHHHHHHHHH
Confidence            346778899999999975210 00   11245667777777888877653 3  2344211    123678899999999


Q ss_pred             HcCCCEEEEeeecCCCCcC----HHHHHHHHHHhCCCCeEEee
Q psy7930          93 ESGADGFVIGALTGEQEID----IEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD----~~~~~~Li~~a~~~~vtFHR  131 (146)
                      ++|++-+++|..   +..+    .+.++++.+.|.|+.+.+|=
T Consensus       116 ~lGa~~v~~g~~---~~~~~~~~~~~l~~l~~~a~Gv~l~lE~  155 (296)
T 2g0w_A          116 LFGVKHINCGLL---EKIPEEQIIVALGELCDRAEELIIGLEF  155 (296)
T ss_dssp             HHTCCEEEECCC---SCCCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HcCCCEEEEcCC---CCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            999999999876   2233    45567777777778887773

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=95.38  E-value=0.066  Score=41.21  Aligned_cols=98  Identities=10%  Similarity=-0.062  Sum_probs=65.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +.+..+.+.|.+-|||...--..+.+|. ...++...+..++.+..+=-+ ..       ..++.+++-|+.++++|++-
T Consensus        34 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~-------~~~~~~~~~i~~A~~lGa~~  105 (257)
T 3lmz_A           34 TTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPI-YM-------KSEEEIDRAFDYAKRVGVKL  105 (257)
T ss_dssp             HHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEE-EE-------CSHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecc-cc-------CCHHHHHHHHHHHHHhCCCE
Confidence            4456788899999999975111222321 234455555668887755333 11       34778899999999999999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA  132 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA  132 (146)
                      +|+-   +.    .+.++++.+.|+  |+.+.+|=-
T Consensus       106 v~~~---p~----~~~l~~l~~~a~~~gv~l~lEn~  134 (257)
T 3lmz_A          106 IVGV---PN----YELLPYVDKKVKEYDFHYAIHLH  134 (257)
T ss_dssp             EEEE---EC----GGGHHHHHHHHHHHTCEEEEECC
T ss_pred             EEec---CC----HHHHHHHHHHHHHcCCEEEEecC
Confidence            9973   21    467788888776  677777753

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=95.36  E-value=0.069  Score=44.29  Aligned_cols=80  Identities=19%  Similarity=0.099  Sum_probs=58.8

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHh-hCC-CcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKR-LVL-VPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~-~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..+-+|.+|+.-+...++.|++=|+=-..+--+|.-. ...+++.+++ ..+ +||.+   -  ||  ..++       +
T Consensus       126 ~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~---~--GG--I~tp-------s  191 (268)
T 2htm_A          126 LVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVV---D--AG--LGLP-------S  191 (268)
T ss_dssp             EECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEE---E--SC--CCSH-------H
T ss_pred             EEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEE---e--CC--CCCH-------H
Confidence            3457899999999999999999997766543334211 3667899988 677 99765   2  33  3333       5


Q ss_pred             HHHHHHHcCCCEEEEee
Q psy7930          87 DCHQFVESGADGFVIGA  103 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~  103 (146)
                      |+..+.++|+|||++|=
T Consensus       192 DAa~AmeLGAdgVlVgS  208 (268)
T 2htm_A          192 HAAEVMELGLDAVLVNT  208 (268)
T ss_dssp             HHHHHHHTTCCEEEESH
T ss_pred             HHHHHHHcCCCEEEECh
Confidence            67778899999999984

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=95.35  E-value=0.026  Score=45.12  Aligned_cols=80  Identities=21%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             eeEEEecCHHHHHHHH----H-cCCCEEEecCC---CCCCCC----CCC--HHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          11 TLEVCVDSVASALAAV----R-GGADRLELCAA---LSEGGL----TPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~----~-~GAdRIELc~~---l~~GGl----TPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      .+-+...++++...+.    + .|+|.|||+-+   ...||.    .|.  ..+++.+++.+++||.|.++| --    .
T Consensus       102 ~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~-~~----~  176 (311)
T 1ep3_A          102 IANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSP-NV----T  176 (311)
T ss_dssp             EEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS-CS----S
T ss_pred             EEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC-Ch----H
Confidence            4556555665544433    4 89999999632   112333    221  567778888789999999998 22    2


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      +..|      -++.+.++|+|+|++
T Consensus       177 ~~~~------~a~~l~~~G~d~i~v  195 (311)
T 1ep3_A          177 DIVP------IAKAVEAAGADGLTM  195 (311)
T ss_dssp             CSHH------HHHHHHHTTCSEEEE
T ss_pred             HHHH------HHHHHHHcCCCEEEE
Confidence            2222      256778899999998

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=95.35  E-value=0.35  Score=37.13  Aligned_cols=110  Identities=8%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC--CCCCCHHHHHHH---HhhCCCcE--EEEEccCCCCCcccCH-----HHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEG--GLTPTLGLYRVI---KRLVLVPV--FVMIRVRAGFDFVFSQ-----AEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~i~~~---~~~~~ipv--~vMIRP~R~gdF~Ys~-----~E~~~M~~d   87 (146)
                      +.+..|.+.|.+-|||...-...  ....+...++++   .+..++.+  ..+--| -..++.-.+     .-++.+++.
T Consensus        16 ~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~-~~~~~~~~~~~~r~~~~~~~~~~   94 (287)
T 2x7v_A           16 RVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSG-YLINLASPKDDIWQKSVELLKKE   94 (287)
T ss_dssp             GHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECC-TTCCTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcceeEEecc-cccccCCCCHHHHHHHHHHHHHH
Confidence            45677889999999997421111  111233444444   44457774  333335 323333222     236788999


Q ss_pred             HHHHHHcCCCEEEE--eeecCCCCcC------HHHHHHHHHHhCCCCeEEee
Q psy7930          88 CHQFVESGADGFVI--GALTGEQEID------IEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        88 I~~~~~~GadG~Vf--G~L~~dg~iD------~~~~~~Li~~a~~~~vtFHR  131 (146)
                      |+.++++|++.+|+  |.-... .-+      .+.++++.+.+.|+.+.+|=
T Consensus        95 i~~A~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~l~~l~~~~~gv~l~lEn  145 (287)
T 2x7v_A           95 VEICRKLGIRYLNIHPGSHLGT-GEEEGIDRIVRGLNEVLNNTEGVVILLEN  145 (287)
T ss_dssp             HHHHHHHTCCEEEECCEECTTS-CHHHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred             HHHHHHcCCCEEEEecCCCCCC-CHHHHHHHHHHHHHHHHcccCCCEEEEeC
Confidence            99999999999998  543211 111      23455555544677777764

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=95.32  E-value=0.059  Score=44.72  Aligned_cols=73  Identities=29%  Similarity=0.307  Sum_probs=56.6

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      .+||-++|++++..|.+.|||.|=|-+        .+...++++++.++  +||.    - -|| .  +       .+.|
T Consensus       210 kI~vev~tlee~~eA~~aGaD~I~ld~--------~~~e~l~~~v~~~~~~~~I~----A-SGG-I--t-------~~~i  266 (296)
T 1qap_A          210 PVEVEVENLDELDDALKAGADIIMLDN--------FNTDQMREAVKRVNGQARLE----V-SGN-V--T-------AETL  266 (296)
T ss_dssp             CEEEEESSHHHHHHHHHTTCSEEEESS--------CCHHHHHHHHHTTCTTCCEE----E-CCC-S--C-------HHHH
T ss_pred             cEEEEeCCHHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhCCCCeEE----E-ECC-C--C-------HHHH
Confidence            678888999999999999999999843        67788888887663  4443    3 455 3  2       3567


Q ss_pred             HHHHHcCCCEEEEeeecC
Q psy7930          89 HQFVESGADGFVIGALTG  106 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~  106 (146)
                      +.+.+.|+|+|.+|.|+.
T Consensus       267 ~~~a~~GvD~isvGsli~  284 (296)
T 1qap_A          267 REFAETGVDFISVGALTK  284 (296)
T ss_dssp             HHHHHTTCSEEECSHHHH
T ss_pred             HHHHHcCCCEEEEeHHHc
Confidence            888999999999998763

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=95.30  E-value=0.15  Score=40.93  Aligned_cols=70  Identities=20%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCC-----CCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAA-----LSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~-----l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +...+-+..+.++||+.|++...     -..||  +..+...++++++.+++|+.+-+++ +      +       .+++
T Consensus        28 ~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~-~------~-------~~~~   93 (297)
T 2zbt_A           28 VTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRI-G------H-------FVEA   93 (297)
T ss_dssp             ESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEET-T------C-------HHHH
T ss_pred             echHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEecc-C------C-------HHHH
Confidence            34588899999999999998421     12356  4457889999999999999887788 3      1       3567


Q ss_pred             HHHHHcCCCEE
Q psy7930          89 HQFVESGADGF   99 (146)
Q Consensus        89 ~~~~~~GadG~   99 (146)
                      +.+.++|||++
T Consensus        94 ~~~~~aGad~v  104 (297)
T 2zbt_A           94 MILEAIGVDFI  104 (297)
T ss_dssp             HHHHHTTCSEE
T ss_pred             HHHHHCCCCEE
Confidence            78889999999

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=95.29  E-value=0.05  Score=44.97  Aligned_cols=82  Identities=22%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      .+||=++|++++..|.+.|||.|-|= +       .+...++++++.++- ..++.|-- .|| ..         .+.|+
T Consensus       196 ~I~Vev~t~eea~eal~aGaD~I~LD-n-------~~~~~~~~~v~~l~~~~~~v~iea-SGG-It---------~~~i~  256 (284)
T 1qpo_A          196 PCEVEVDSLEQLDAVLPEKPELILLD-N-------FAVWQTQTAVQRRDSRAPTVMLES-SGG-LS---------LQTAA  256 (284)
T ss_dssp             CEEEEESSHHHHHHHGGGCCSEEEEE-T-------CCHHHHHHHHHHHHHHCTTCEEEE-ESS-CC---------TTTHH
T ss_pred             CEEEEeCCHHHHHHHHHcCCCEEEEC-C-------CCHHHHHHHHHHhhccCCCeEEEE-ECC-CC---------HHHHH
Confidence            78888899999999999999977654 3       355777776665321 01123333 344 42         25688


Q ss_pred             HHHHcCCCEEEEeeecCCCC-cC
Q psy7930          90 QFVESGADGFVIGALTGEQE-ID  111 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~-iD  111 (146)
                      .+.+.|+|+|++|.++..-. +|
T Consensus       257 ~~a~tGVD~isvG~l~~~a~~~D  279 (284)
T 1qpo_A          257 TYAETGVDYLAVGALTHSVRVLD  279 (284)
T ss_dssp             HHHHTTCSEEECGGGTSSBCCCC
T ss_pred             HHHhcCCCEEEECHHHcCCCCcc
Confidence            89999999999999887543 55

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=95.29  E-value=0.087  Score=44.50  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      ..+.+..+.+.|+|-|||...  .|  .|  ....++.+++.+ ++||.+   +     .+.+.       ++++.+.++
T Consensus       154 ~~~~a~~~~~~G~d~i~i~~~--~g--~~~~~~e~i~~ir~~~~~~pviv---~-----~v~~~-------~~a~~a~~~  214 (404)
T 1eep_A          154 TIERVEELVKAHVDILVIDSA--HG--HSTRIIELIKKIKTKYPNLDLIA---G-----NIVTK-------EAALDLISV  214 (404)
T ss_dssp             HHHHHHHHHHTTCSEEEECCS--CC--SSHHHHHHHHHHHHHCTTCEEEE---E-----EECSH-------HHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCEEEEeCC--CC--ChHHHHHHHHHHHHHCCCCeEEE---c-----CCCcH-------HHHHHHHhc
Confidence            457777888999999999532  22  45  356778888887 788866   3     33343       466778889


Q ss_pred             CCCEEEEee----------ecCCCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          95 GADGFVIGA----------LTGEQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        95 GadG~VfG~----------L~~dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      |+|+|++|.          ....|.-+.+.+.++.+.++  ++|+.
T Consensus       215 Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVi  260 (404)
T 1eep_A          215 GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICII  260 (404)
T ss_dssp             TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEE
T ss_pred             CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEE
Confidence            999999963          01123335667777777655  44443

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=95.28  E-value=0.33  Score=37.26  Aligned_cols=110  Identities=8%  Similarity=-0.022  Sum_probs=62.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCC---CCCHHH---HHHHHhhCCCcE--EEEEccCCCCCcccCHH-----HHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGL---TPTLGL---YRVIKRLVLVPV--FVMIRVRAGFDFVFSQA-----EKEIMAL   86 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGl---TPS~g~---i~~~~~~~~ipv--~vMIRP~R~gdF~Ys~~-----E~~~M~~   86 (146)
                      +.+..|.+.|.+-|||... .....   ..+...   +++..+..++++  ..+--| -..++.-.+.     -++.+++
T Consensus        16 ~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~~l~~~~~~~r~~~~~~~~~   93 (285)
T 1qtw_A           16 NAAIRAAEIDATAFALFTK-NQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDS-YLINLGHPVTEALEKSRDAFID   93 (285)
T ss_dssp             HHHHHHHHTTCSEEECCSS-CSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCC-TTCCTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeeCC-CCCcCcCCCCCHHHHHHHHHHHHHcCCCceeEEecCC-cccccCCCCHHHHHHHHHHHHH
Confidence            4456678899999999421 11111   123334   444445557764  222235 3334443222     3678899


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCH--------HHHHHHHHHhCCCCeEEee
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDI--------EFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~--------~~~~~Li~~a~~~~vtFHR  131 (146)
                      -|+.++++|++.+|+..=...+..+.        +.++++.+...++.+.++-
T Consensus        94 ~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn  146 (285)
T 1qtw_A           94 EMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIEN  146 (285)
T ss_dssp             HHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             HHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEec
Confidence            99999999999999832111122222        3455665544677777764

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=95.28  E-value=0.07  Score=45.39  Aligned_cols=72  Identities=21%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGL----------TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+.+.+..+++.|||-|-+  ....|+.          .|....+..+.+   ..++||..     -|| ..+.    
T Consensus       156 ~v~t~e~A~~a~~aGAD~I~v--G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA-----~GG-I~~~----  223 (366)
T 4fo4_A          156 NVATAEGARALIEAGVSAVKV--GIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIA-----DGG-IRFS----  223 (366)
T ss_dssp             EECSHHHHHHHHHHTCSEEEE--CSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEE-----ESC-CCSH----
T ss_pred             eeCCHHHHHHHHHcCCCEEEE--ecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEE-----eCC-CCCH----
Confidence            478999999999999999998  3344443          466777777765   45788753     244 3332    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          .||..+..+|||+|.+|
T Consensus       224 ----~di~kala~GAd~V~vG  240 (366)
T 4fo4_A          224 ----GDISKAIAAGASCVMVG  240 (366)
T ss_dssp             ----HHHHHHHHTTCSEEEES
T ss_pred             ----HHHHHHHHcCCCEEEEC
Confidence                57888899999999999

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=95.28  E-value=0.43  Score=36.27  Aligned_cols=109  Identities=13%  Similarity=0.010  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCEEEec-CCCCCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcc-cCHH----HHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELC-AALSEGG-LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFV-FSQA----EKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc-~~l~~GG-lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~-Ys~~----E~~~M~~dI~~~~   92 (146)
                      +.+..+.+.|.+-|||. ......= .......++...+..++.+..+=-| -  +|. -++.    -++.+++-|+.++
T Consensus        18 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~a~   94 (278)
T 1i60_A           18 LDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNAL-V--FFNNRDEKGHNEIITEFKGMMETCK   94 (278)
T ss_dssp             HHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEE-E--CCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeeccc-c--ccccCCHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999998 4311000 0135566777777778887655444 2  444 2332    3778999999999


Q ss_pred             HcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          93 ESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      ++|++-+|+-.-......+        .+.++++.+.|+  |+.+.+|=
T Consensus        95 ~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn  143 (278)
T 1i60_A           95 TLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEF  143 (278)
T ss_dssp             HHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEEC
T ss_pred             HcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            9999999983211111233        245566666665  67777764

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=95.25  E-value=0.069  Score=41.67  Aligned_cols=74  Identities=14%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCC-CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSE-GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~-GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +..+-+..+++.||+.|-+-+--.. .+.-+...+++++++.+++||.+.      | ...|.       +|++.+.+.|
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~------G-gi~~~-------~~~~~~l~~G  101 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------G-GAGKM-------EHFLEAFLRG  101 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE------S-CCCSH-------HHHHHHHHTT
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe------C-CCCCH-------HHHHHHHHcC
Confidence            4457788889999999987542112 234567899999999999998652      2 34454       4566667889


Q ss_pred             CCEEEEeee
Q psy7930          96 ADGFVIGAL  104 (146)
Q Consensus        96 adG~VfG~L  104 (146)
                      ||+|++|-.
T Consensus       102 ad~V~ig~~  110 (247)
T 3tdn_A          102 ADKVSINTA  110 (247)
T ss_dssp             CSEECCSHH
T ss_pred             CCeeehhhH
Confidence            999999963

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.24  E-value=0.095  Score=39.92  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCC----CC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSE----GG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~----GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +=+-+.+.+++..+.+.|+|-|-+...-..    ++  ..|....++++++.+++||.+     -|| . .|.       
T Consensus       122 v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia-----~GG-I-~~~-------  187 (223)
T 1y0e_A          122 IMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA-----EGN-V-ITP-------  187 (223)
T ss_dssp             EEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE-----ESS-C-CSH-------
T ss_pred             EEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE-----ecC-C-CCH-------
Confidence            335677899999999999999865432111    11  223456788888888888765     344 2 122       


Q ss_pred             HHHHHHHHcCCCEEEEee-ecCCCCcCHHHHHHHHHH
Q psy7930          86 LDCHQFVESGADGFVIGA-LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~  121 (146)
                      +|+..+.++|||+|++|= |..    .....++|.++
T Consensus       188 ~~~~~~~~~Gad~v~vG~al~~----p~~~~~~~~~~  220 (223)
T 1y0e_A          188 DMYKRVMDLGVHCSVVGGAITR----PKEITKRFVQV  220 (223)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHC----HHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEChHHcC----cHHHHHHHHHH
Confidence            567778889999999992 221    33455555543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.24  E-value=0.094  Score=45.94  Aligned_cols=95  Identities=18%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++.+.+..+.++|+|.|++..+-  |-..-....++.+++.. ++||.+        +.+-+.+       +++.+.++|
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~--g~~~~~~~~i~~ir~~~p~~~Vi~--------g~v~t~e-------~a~~l~~aG  293 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSH--GHSEGVLQRIRETRAAYPHLEIIG--------GNVATAE-------GARALIEAG  293 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSC--TTSHHHHHHHHHHHHHCTTCCEEE--------EEECSHH-------HHHHHHHHT
T ss_pred             chHHHHHHHHhccCceEEecccc--ccchHHHHHHHHHHHHCCCceEEE--------cccCcHH-------HHHHHHHhC
Confidence            45889999999999999998652  22112346788888877 788866        1333443       457778899


Q ss_pred             CCEEEEee------ec----CCCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          96 ADGFVIGA------LT----GEQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        96 adG~VfG~------L~----~dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      ||+|++|.      -+    .-|.-+...+.++.++++  +.|+.
T Consensus       294 aD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVI  338 (496)
T 4fxs_A          294 VSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVI  338 (496)
T ss_dssp             CSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred             CCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEE
Confidence            99999973      11    123446677788888775  45543

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=95.24  E-value=0.12  Score=42.88  Aligned_cols=71  Identities=17%  Similarity=0.172  Sum_probs=54.2

Q ss_pred             EecCHHHHHHHHHcCCCEEEec-----CCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELC-----AALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc-----~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      =+++++.|..++++||+-|-.-     ..-..||  -..++..++++++.+++||.+-.|.    +|          ..+
T Consensus        27 d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i----~~----------ide   92 (297)
T 4adt_A           27 DVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRI----GH----------FVE   92 (297)
T ss_dssp             EESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEET----TC----------HHH
T ss_pred             CCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccC----Cc----------HHH
Confidence            3578899999999999998665     3334555  5679999999999999999887776    23          345


Q ss_pred             HHHHHHcCCCEE
Q psy7930          88 CHQFVESGADGF   99 (146)
Q Consensus        88 I~~~~~~GadG~   99 (146)
                      ++.+.++|||.|
T Consensus        93 ~qil~aaGAD~I  104 (297)
T 4adt_A           93 AQILEELKVDML  104 (297)
T ss_dssp             HHHHHHTTCSEE
T ss_pred             HHHHHHcCCCEE
Confidence            566668999998

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=95.21  E-value=0.094  Score=40.46  Aligned_cols=112  Identities=14%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             CHH-HHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEc-cCCCCCcccCHH-----HHHHHHHHHH
Q psy7930          18 SVA-SALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIR-VRAGFDFVFSQA-----EKEIMALDCH   89 (146)
Q Consensus        18 s~~-~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIR-P~R~gdF~Ys~~-----E~~~M~~dI~   89 (146)
                      +++ .+..+.+.|.+-|||...-.. ..+ -...-++...+..++.+....- | ...++.-.+.     -++.+++-|+
T Consensus        18 ~~~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~-~~~~l~~~d~~~r~~~~~~~~~~i~   95 (290)
T 2qul_A           18 DFPATAKRIAGLGFDLMEISLGEFH-NLSDAKKRELKAVADDLGLTVMCCIGLK-SEYDFASPDKSVRDAGTEYVKRLLD   95 (290)
T ss_dssp             CHHHHHHHHHHTTCSEEEEESTTGG-GSCHHHHHHHHHHHHHHTCEEEEEEEEC-GGGCTTCSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCEEEEecCCcc-ccchhhHHHHHHHHHHcCCceEEecCCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            344 456678899999999864211 111 1233444444556888776542 3 3334443222     2578999999


Q ss_pred             HHHHcCCCEEEE------ee--ecCCCCcC------HHHHHHHHHHhC--CCCeEEee
Q psy7930          90 QFVESGADGFVI------GA--LTGEQEID------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        90 ~~~~~GadG~Vf------G~--L~~dg~iD------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      .++++|++-+|+      |.  ..++..-+      .+.++++.+.|+  |+.+.+|=
T Consensus        96 ~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn  153 (290)
T 2qul_A           96 DCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEV  153 (290)
T ss_dssp             HHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEEC
T ss_pred             HHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            999999999884      21  11111111      234555555554  77788773

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=95.19  E-value=0.16  Score=39.39  Aligned_cols=109  Identities=11%  Similarity=-0.037  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHH---HHHHhhCCCcEEEEEccCCCCCcccCHH-----HHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLY---RVIKRLVLVPVFVMIRVRAGFDFVFSQA-----EKEIMALDCHQF   91 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i---~~~~~~~~ipv~vMIRP~R~gdF~Ys~~-----E~~~M~~dI~~~   91 (146)
                      +.+..+.+.|.+-|||...- .  ..++...+   +...+..++.+..+.-|....+|.-.+.     -++.+++-|+.+
T Consensus        21 ~~l~~~~~~G~~~vEl~~~~-~--~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a   97 (294)
T 3vni_A           21 YYIEKVAKLGFDILEIAASP-L--PFYSDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRL   97 (294)
T ss_dssp             HHHHHHHHHTCSEEEEESTT-G--GGCCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCcc-c--CCcCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45566788999999999642 1  12244444   4444556898888655412334443333     357888999999


Q ss_pred             HHcCCCEEEEeeec-----CCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          92 VESGADGFVIGALT-----GEQEID--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        92 ~~~GadG~VfG~L~-----~dg~iD--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +++|++.+++.+-.     -.+..+        .+.++++.+.|+  |+.+.+|=
T Consensus        98 ~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn  152 (294)
T 3vni_A           98 YKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEV  152 (294)
T ss_dssp             HHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            99999998742211     122233        345566666664  67777773

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=95.15  E-value=0.082  Score=44.96  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      .+.++|..|++.|||-|-+-..-  ...|-.|+...+.++++.+  ++||..-     || ... .       .|+..+.
T Consensus       226 ~~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~-----GG-I~~-g-------~Dv~kaL  291 (352)
T 3sgz_A          226 LTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMD-----GG-VRT-G-------TDVLKAL  291 (352)
T ss_dssp             CSHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEE-----SS-CCS-H-------HHHHHHH
T ss_pred             CcHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEE-----CC-CCC-H-------HHHHHHH
Confidence            78999999999999999986531  1223356788888888877  6887552     33 222 2       5788888


Q ss_pred             HcCCCEEEEe
Q psy7930          93 ESGADGFVIG  102 (146)
Q Consensus        93 ~~GadG~VfG  102 (146)
                      .+|||+|.+|
T Consensus       292 alGA~aV~iG  301 (352)
T 3sgz_A          292 ALGARCIFLG  301 (352)
T ss_dssp             HTTCSEEEES
T ss_pred             HcCCCEEEEC
Confidence            8999999998

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=95.13  E-value=0.22  Score=38.22  Aligned_cols=71  Identities=15%  Similarity=0.209  Sum_probs=49.2

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCC----CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          19 VASALAAVRGGADRLELCAALSEGG----LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GG----lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .+.+..+.++|+|-|||--  .-|-    ++-....++++++.++.|+.+++-       +.+.+      +.++.+.++
T Consensus        26 ~~~i~~~~~~G~d~i~l~~--~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~-------vnd~~------~~v~~~~~~   90 (230)
T 1rpx_A           26 GEQVKAIEQAGCDWIHVDV--MDGRFVPNITIGPLVVDSLRPITDLPLDVHLM-------IVEPD------QRVPDFIKA   90 (230)
T ss_dssp             HHHHHHHHHTTCCCEEEEE--EBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEE-------SSSHH------HHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEee--ccCCcccccccCHHHHHHHHhccCCcEEEEEE-------ecCHH------HHHHHHHHc
Confidence            4567788899999999952  1111    222368899988877777666542       22221      578888999


Q ss_pred             CCCEEEEeee
Q psy7930          95 GADGFVIGAL  104 (146)
Q Consensus        95 GadG~VfG~L  104 (146)
                      |+||+.++..
T Consensus        91 Gad~v~vh~~  100 (230)
T 1rpx_A           91 GADIVSVHCE  100 (230)
T ss_dssp             TCSEEEEECS
T ss_pred             CCCEEEEEec
Confidence            9999999976

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.11  E-value=0.065  Score=46.26  Aligned_cols=74  Identities=20%  Similarity=0.359  Sum_probs=52.0

Q ss_pred             EecCHHHHHHHHHcCCCEEEe-------cCCCCCCCC-CCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLEL-------CAALSEGGL-TPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIEL-------c~~l~~GGl-TPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .+.+.+.|..+++.|||-|=+       |..-...|. .|...++..+.+.   .++||..     -|| ..+.      
T Consensus       191 ~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA-----~GG-I~~~------  258 (400)
T 3ffs_A          191 NVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA-----DGG-IRYS------  258 (400)
T ss_dssp             EECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEE-----ESC-CCSH------
T ss_pred             ecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEe-----cCC-CCCH------
Confidence            468999999999999999988       211111122 4777778777664   4788753     244 3332      


Q ss_pred             HHHHHHHHHHcCCCEEEEe
Q psy7930          84 MALDCHQFVESGADGFVIG  102 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG  102 (146)
                        +||..+..+||++|.+|
T Consensus       259 --~di~kalalGAd~V~vG  275 (400)
T 3ffs_A          259 --GDIGKALAVGASSVMIG  275 (400)
T ss_dssp             --HHHHHHHTTTCSEEEEC
T ss_pred             --HHHHHHHHcCCCEEEEC
Confidence              78888899999999999

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.09  E-value=0.12  Score=45.13  Aligned_cols=94  Identities=20%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ++.+.+.++.++|+|.|++..+  .|-.......++.+++.. ++||.+        ..+-+.+       +++.+.++|
T Consensus       229 ~~~~~a~~l~~aG~d~I~id~a--~g~~~~~~~~v~~i~~~~p~~~Vi~--------g~v~t~e-------~a~~l~~aG  291 (490)
T 4avf_A          229 DTGERVAALVAAGVDVVVVDTA--HGHSKGVIERVRWVKQTFPDVQVIG--------GNIATAE-------AAKALAEAG  291 (490)
T ss_dssp             THHHHHHHHHHTTCSEEEEECS--CCSBHHHHHHHHHHHHHCTTSEEEE--------EEECSHH-------HHHHHHHTT
T ss_pred             chHHHHHHHhhcccceEEeccc--CCcchhHHHHHHHHHHHCCCceEEE--------eeeCcHH-------HHHHHHHcC
Confidence            3468888999999999999864  232223457888888877 778765        1344443       467889999


Q ss_pred             CCEEEEeeecC-----------CCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          96 ADGFVIGALTG-----------EQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        96 adG~VfG~L~~-----------dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      ||+|++|. .+           -|.-+...+.++.++++  +.|+.
T Consensus       292 aD~I~vg~-g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVI  336 (490)
T 4avf_A          292 ADAVKVGI-GPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLI  336 (490)
T ss_dssp             CSEEEECS-SCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEE
T ss_pred             CCEEEECC-CCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEE
Confidence            99999974 22           12346677788888775  34543

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=95.05  E-value=0.46  Score=37.38  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC----CCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCH------HHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSE----GGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ------AEKEIMALDC   88 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~----GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~------~E~~~M~~dI   88 (146)
                      +.+..|.+.|.+-|||...-..    .-++| ....+++..+..++....+--| -..++.-.+      .-++.+++.|
T Consensus        22 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~h~~-~~~nl~s~d~~~~r~~~~~~~~~~i  100 (303)
T 3aal_A           22 AASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAP-YIINIGNTTNLDTFSLGVDFLRAEI  100 (303)
T ss_dssp             HHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEEEECC-TTCCTTCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEEEecc-ccccCCCCCcHHHHHHHHHHHHHHH
Confidence            3457788889999999432111    11222 4566777777778843344446 333443222      2378899999


Q ss_pred             HHHHHcCCCEEEE--eee
Q psy7930          89 HQFVESGADGFVI--GAL  104 (146)
Q Consensus        89 ~~~~~~GadG~Vf--G~L  104 (146)
                      +.++++|++.+|+  |..
T Consensus       101 ~~A~~lGa~~vv~h~g~~  118 (303)
T 3aal_A          101 ERTEAIGAKQLVLHPGAH  118 (303)
T ss_dssp             HHHHHHTCSEEEECCEEC
T ss_pred             HHHHHcCCCEEEECCCcC
Confidence            9999999999998  643

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=95.02  E-value=0.68  Score=35.78  Aligned_cols=112  Identities=13%  Similarity=0.043  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCC---CCcc--------cC----HHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAG---FDFV--------FS----QAEKEI   83 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~---gdF~--------Ys----~~E~~~   83 (146)
                      +.+..+.+.|.+-|||...-. ..++| ...-++...+..++.+.++--+-.+   .+|.        .+    +..++.
T Consensus        25 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~  103 (290)
T 3tva_A           25 VHLEVAQDLKVPTVQVHAPHP-HTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAE  103 (290)
T ss_dssp             BCHHHHHHTTCSEEEEECCCG-GGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHH
Confidence            456678899999999996321 11222 1444555556678988777431011   1220        11    356788


Q ss_pred             HHHHHHHHHHcCCCEEEE--eeecCCCCcC----HHHHHHHHHHhC--CCCeEEeec
Q psy7930          84 MALDCHQFVESGADGFVI--GALTGEQEID----IEFIRQLKTIIG--DRPITFHRA  132 (146)
Q Consensus        84 M~~dI~~~~~~GadG~Vf--G~L~~dg~iD----~~~~~~Li~~a~--~~~vtFHRA  132 (146)
                      +++-|+.++++|++-+|+  |....+..-+    .+.++++.+.|+  |+.+.+|=-
T Consensus       104 ~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~  160 (290)
T 3tva_A          104 MKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETG  160 (290)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence            999999999999999998  5443321111    344666777665  666667653

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=95.01  E-value=0.11  Score=40.10  Aligned_cols=100  Identities=12%  Similarity=0.051  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccC-HHHH-HHHHHHHHHHHHcCCCE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS-QAEK-EIMALDCHQFVESGADG   98 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys-~~E~-~~M~~dI~~~~~~GadG   98 (146)
                      -+..|.+.|.+-|||...+...  ++....+++..+..++++... -| . .  .++ +..+ +.+++.|+.++++|++-
T Consensus        28 ~l~~a~~~G~~~vEl~~~~~~~--~~~~~~~~~~l~~~gl~i~~~-~~-~-~--~~~~~~~~~~~~~~~i~~A~~lGa~~  100 (264)
T 1yx1_A           28 FLPLLAMAGAQRVELREELFAG--PPDTEALTAAIQLQGLECVFS-SP-L-E--LWREDGQLNPELEPTLRRAEACGAGW  100 (264)
T ss_dssp             GHHHHHHHTCSEEEEEGGGCSS--CCCHHHHHHHHHHTTCEEEEE-EE-E-E--EECTTSSBCTTHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHcCCCEEEEEHHhcCC--CHHHHHHHHHHHHcCCEEEEe-cc-h-h--hcCCchhHHHHHHHHHHHHHHcCCCE
Confidence            4567889999999998653222  346777777777788887543 34 2 1  112 2245 77899999999999999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      +++..=.....   ..++++.+.|.  |+.+.+|
T Consensus       101 v~~~~g~~~~~---~~l~~l~~~a~~~Gv~l~lE  131 (264)
T 1yx1_A          101 LKVSLGLLPEQ---PDLAALGRRLARHGLQLLVE  131 (264)
T ss_dssp             EEEEEECCCSS---CCHHHHHHHHTTSSCEEEEE
T ss_pred             EEEecCCCCcH---HHHHHHHHHHHhcCCEEEEe
Confidence            98754221111   16677777776  5556655

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=94.92  E-value=0.13  Score=39.80  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCccc---------CHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF---------SQAEKEIMAL   86 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y---------s~~E~~~M~~   86 (146)
                      +.|++++..+.+.|||+|-|-+.+     .+....+.++.+..+..+.+.+-| +.| .++         +..|      
T Consensus        84 I~~~~~~~~~l~~Gad~V~lg~~~-----l~~p~~~~~~~~~~g~~~~~~l~~-~~g-~v~~~g~~~~~~~~~e------  150 (244)
T 1vzw_A           84 IRDDDTLAAALATGCTRVNLGTAA-----LETPEWVAKVIAEHGDKIAVGLDV-RGT-TLRGRGWTRDGGDLYE------  150 (244)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECHHH-----HHCHHHHHHHHHHHGGGEEEEEEE-ETT-EECCSSSCCCCCBHHH------
T ss_pred             cCCHHHHHHHHHcCCCEEEECchH-----hhCHHHHHHHHHHcCCcEEEEEEc-cCC-EEEEcCcccCCCCHHH------
Confidence            468899999999999999886532     344567777766655456666766 533 333         2222      


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                      .++.+.++|++.|.+=-.+++|.   +|.+.++++.+.. +.|+.
T Consensus       151 ~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~-~ipvi  194 (244)
T 1vzw_A          151 TLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAAT-DRPVV  194 (244)
T ss_dssp             HHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTC-SSCEE
T ss_pred             HHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhc-CCCEE
Confidence            24566679999988766667653   7999999998754 45543

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.92  E-value=0.18  Score=41.95  Aligned_cols=104  Identities=22%  Similarity=0.270  Sum_probs=64.6

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      +.|..|+++|.|=|||..+-                 .-|| +.-      ..+++.+++.++.||.|=|+|   .+|.-
T Consensus       148 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eiv~avr~~v~~pv~vRls~---~~~~~  223 (340)
T 3gr7_A          148 NGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGG-SPENRYRFLGEVIDAVREVWDGPLFVRISA---SDYHP  223 (340)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHCCSCEEEEEES---CCCST
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccC-CHHHHHHHHHHHHHHHHHhcCCceEEEecc---ccccC
Confidence            56788999999999998541                 1144 221      457888888888998777777   23421


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEE--eeecC-----CCCcCHHHHHHHHHHhCCCCeE
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVI--GALTG-----EQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~Vf--G~L~~-----dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      .....+...+=++.+.++|+|.+.+  |-..+     ....+.+..+++.+.. +.|+.
T Consensus       224 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi  281 (340)
T 3gr7_A          224 DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTG  281 (340)
T ss_dssp             TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEE
Confidence            1111233344567778899999987  43332     1224667777776655 34443

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=94.91  E-value=0.13  Score=40.41  Aligned_cols=100  Identities=19%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC---CCCCCCHHHHHHHHhhCCCcEEEEE-ccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAALSE---GGLTPTLGLYRVIKRLVLVPVFVMI-RVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~---GGlTPS~g~i~~~~~~~~ipv~vMI-RP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++..|.+.|||-|++..|++.   |--.-....++.+++.++ |+.+=+ -+ +++   ++++|+   ..-.+.+.++|
T Consensus        74 ~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e-~~~---l~~~~~---~~~a~~a~eaG  145 (225)
T 1mzh_A           74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVE-TPY---LNEEEI---KKAVEICIEAG  145 (225)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECC-GGG---CCHHHH---HHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEe-CCC---CCHHHH---HHHHHHHHHhC
Confidence            5567899999999997666543   211112345667777776 765544 23 222   466653   44566788899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC-CCCe
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG-DRPI  127 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~v  127 (146)
                      +|++.+--=...|..+.+.++.+.+..+ ++|+
T Consensus       146 ad~I~tstg~~~gga~~~~i~~v~~~v~~~ipV  178 (225)
T 1mzh_A          146 ADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKV  178 (225)
T ss_dssp             CSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEE
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcE
Confidence            9999332100124568888888888764 4554

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=94.88  E-value=0.33  Score=38.14  Aligned_cols=100  Identities=18%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCCEE--EecCCCCCCCCCCCHH----HHHHHHh---hCCCcEEEEEccCCCCCcc--cCHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRL--ELCAALSEGGLTPTLG----LYRVIKR---LVLVPVFVMIRVRAGFDFV--FSQAEKEIMALD   87 (146)
Q Consensus        19 ~~~a~~A~~~GAdRI--ELc~~l~~GGlTPS~g----~i~~~~~---~~~ipv~vMIRP~R~gdF~--Ys~~E~~~M~~d   87 (146)
                      .+.+..|.+.||+.|  -+...      +++..    .++++.+   ..++|+.+.+-| +|.+..  .|..+++.   -
T Consensus       102 ~~~v~~a~~~Ga~~v~~~l~~~------~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~-~G~~l~~~~~~~~~~~---~  171 (273)
T 2qjg_A          102 VTTVEEAIRMGADAVSIHVNVG------SDEDWEAYRDLGMIAETCEYWGMPLIAMMYP-RGKHIQNERDPELVAH---A  171 (273)
T ss_dssp             CSCHHHHHHTTCSEEEEEEEET------STTHHHHHHHHHHHHHHHHHHTCCEEEEEEE-CSTTCSCTTCHHHHHH---H
T ss_pred             HHHHHHHHHcCCCEEEEEEecC------CCCHHHHHHHHHHHHHHHHHcCCCEEEEeCC-CCcccCCCCCHhHHHH---H
Confidence            678889999999999  55432      22322    2333332   348999888878 655321  34433322   2


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeeccc
Q psy7930          88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFD  134 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD  134 (146)
                      .+.+.++|+|-+.++.     ..|.+.++++.+.. +.|+..|=-+.
T Consensus       172 a~~a~~~Gad~i~~~~-----~~~~~~l~~i~~~~-~ipvva~GGi~  212 (273)
T 2qjg_A          172 ARLGAELGADIVKTSY-----TGDIDSFRDVVKGC-PAPVVVAGGPK  212 (273)
T ss_dssp             HHHHHHTTCSEEEECC-----CSSHHHHHHHHHHC-SSCEEEECCSC
T ss_pred             HHHHHHcCCCEEEECC-----CCCHHHHHHHHHhC-CCCEEEEeCCC
Confidence            2678889999888883     47999999998876 67877765444

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*

Probab=94.85  E-value=0.25  Score=38.97  Aligned_cols=111  Identities=13%  Similarity=-0.021  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccC-CCCCcccCH-----HHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQ-----AEKEIMALDCHQ   90 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~-----~E~~~M~~dI~~   90 (146)
                      +++++..+.+.|.+-|||...-. ...++ ....++...+..++.+... -|- .+.++.-.+     .-++.+++-|+.
T Consensus        38 ~l~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~l~~~l~~~gl~i~~~-~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~  115 (309)
T 2hk0_A           38 FGPYIEKVAKLGFDIIEVAAHHI-NEYSDAELATIRKSAKDNGIILTAG-IGPSKTKNLSSEDAAVRAAGKAFFERTLSN  115 (309)
T ss_dssp             SHHHHHHHHHTTCSEEEEEHHHH-TTSCHHHHHHHHHHHHHTTCEEEEE-CCCCSSSCSSCSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhCCCEEEeccCCc-cccchhhHHHHHHHHHHcCCeEEEe-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            44458888999999999985311 11121 2344555556678888874 340 123343222     235789999999


Q ss_pred             HHHcCCCEEEEeeec-CCCC----c-C--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          91 FVESGADGFVIGALT-GEQE----I-D--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        91 ~~~~GadG~VfG~L~-~dg~----i-D--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      ++++|++-+| |... +.|.    . +        .+.++++.+.|+  |+.+.+|=
T Consensus       116 A~~lG~~~v~-~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn  171 (309)
T 2hk0_A          116 VAKLDIHTIG-GALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGINLCIEV  171 (309)
T ss_dssp             HHHTTCCEEE-ECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHcCCCEEE-eeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence            9999999998 4321 1222    1 2        345666666664  67777764

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A

Probab=94.81  E-value=0.26  Score=37.58  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=65.3

Q ss_pred             EEecCHHHH-HHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCC-CCcccCHH-----HHHHHH
Q psy7930          14 VCVDSVASA-LAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAG-FDFVFSQA-----EKEIMA   85 (146)
Q Consensus        14 vcv~s~~~a-~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~-gdF~Ys~~-----E~~~M~   85 (146)
                      +...+++++ ..+.+.|.+ |||....  ..+.|.. .++++++.. + ++. +.-| -. .++.-.+.     -++.++
T Consensus         7 ~p~~~l~~~l~~~~~~G~~-vEl~~~~--~~~~~~~-~~~~~~~~~~~-~~~-~h~~-~~~~~l~~~~~~~r~~~~~~~~   79 (254)
T 3ayv_A            7 FPLSRAEEALPRLQALGLG-AEVYLDP--ALLEEDA-LFQSLRRRFSG-KLS-VHLP-FWNLDLLSPDPEVRGLTLRRLL   79 (254)
T ss_dssp             EEGGGHHHHHHHHHHHTCE-EEEECCG--GGTTCHH-HHHHHHHHCCS-CEE-EECC-CTTCCTTCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-EEEeccc--cccCcHH-HHHHHHHHhCC-CeE-EecC-ccCCCCCCCCHHHHHHHHHHHH
Confidence            344455554 557788999 9995331  1234432 677777777 4 443 3334 22 23433222     267889


Q ss_pred             HHHHHHHHcCCCEEEEe--eecCCCC--------cCHHHHHHHHHHhC--CCCeEEee
Q psy7930          86 LDCHQFVESGADGFVIG--ALTGEQE--------IDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG--~L~~dg~--------iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +-|+.++++|++.+|+.  ....+..        -=.+.++++.+.|+  |+.+.+|=
T Consensus        80 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn  137 (254)
T 3ayv_A           80 FGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLLLEN  137 (254)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEEEcC
Confidence            99999999999999884  3222210        01234566666665  77777764

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=94.78  E-value=0.085  Score=40.28  Aligned_cols=104  Identities=15%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCH-----HHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ-----AEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~-----~E~~~M~~dI~~~~~   93 (146)
                      +.+..|.+.|.+-|||...-    ++ -...-++...+..++.+..+- |  +++|.-.+     .-++.+++.|+.+++
T Consensus        22 ~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~~l~~~gl~~~~~~-~--~~~~~~~d~~~r~~~~~~~~~~i~~a~~   94 (275)
T 3qc0_A           22 EAVDICLKHGITAIAPWRDQ----VAAIGLGEAGRIVRANGLKLTGLC-R--GGFFPAPDASGREKAIDDNRRAVDEAAE   94 (275)
T ss_dssp             HHHHHHHHTTCCEEECBHHH----HHHHCHHHHHHHHHHHTCEESCEE-E--EECCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecccc----ccccCHHHHHHHHHHcCCceEEee-c--CCCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45667888999999997520    11 134445555555677655433 3  23444332     235789999999999


Q ss_pred             cCCCEEEEeee-cCCCCcC--------HHHHHHHHHHhC--CCCeEEe
Q psy7930          94 SGADGFVIGAL-TGEQEID--------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        94 ~GadG~VfG~L-~~dg~iD--------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      +|++-+|+..= .+.+..+        .+.++++.+.|+  |+.+.+|
T Consensus        95 lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE  142 (275)
T 3qc0_A           95 LGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIE  142 (275)
T ss_dssp             TTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             hCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence            99999988641 1223333        355677777764  7888888

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}

Probab=94.76  E-value=0.54  Score=36.28  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCH----HHHHHHHHHHHHHHHcCC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQ----AEKEIMALDCHQFVESGA   96 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~----~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+..|.+.|.+-|||...+      |....++...+..++.+..+  + -.+ +. ++    .-++.+++-|+.++++|+
T Consensus        36 ~l~~~~~~G~~~vEl~~~~------~~~~~~~~~l~~~gl~~~~~--~-~~~-~~-~~~~~~~~~~~~~~~i~~a~~lG~  104 (301)
T 3cny_A           36 LLSDIVVAGFQGTEVGGFF------PGPEKLNYELKLRNLEIAGQ--W-FSS-YI-IRDGIEKASEAFEKHCQYLKAINA  104 (301)
T ss_dssp             HHHHHHHHTCCEECCCTTC------CCHHHHHHHHHHTTCEECEE--E-EEE-CH-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCEEEecCCC------CCHHHHHHHHHHCCCeEEEE--e-ccC-CC-ChhhHHHHHHHHHHHHHHHHHcCC
Confidence            4567788899999998432      36677777777788887776  3 222 21 22    236778999999999999


Q ss_pred             CEEEEee--------ecC--C--CCc-C-------HHHHHHHHHHhC--CCCeEEee
Q psy7930          97 DGFVIGA--------LTG--E--QEI-D-------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        97 dG~VfG~--------L~~--d--g~i-D-------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      +-+|+..        ..+  +  ... .       .+.++++.+.|+  |+.+.+|-
T Consensus       105 ~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~  161 (301)
T 3cny_A          105 PVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHH  161 (301)
T ss_dssp             CEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence            9999864        111  0  011 1       245566666664  77787774

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=94.74  E-value=1  Score=34.22  Aligned_cols=107  Identities=15%  Similarity=0.109  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCccc-CHHHHHHHHHHHHHHHHcCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF-SQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y-s~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +.+..|.+.|.+-|||.......-.  ......+++..+..++.+..+=-| -  +|.- ++...+.+++-|+.++++|+
T Consensus        23 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~a~~lG~   99 (272)
T 2q02_A           23 AFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAV-Y--PFNQLTEEVVKKTEGLLRDAQGVGA   99 (272)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEE-T--TTTSCCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhh-h--ccCCcHHHHHHHHHHHHHHHHHhCC
Confidence            3456778899999999853321111  134666777777788887655333 1  1221 35567889999999999999


Q ss_pred             CEEEEeeecCCCC--c---CHHHHHHHHHHhC--CCCeEEe
Q psy7930          97 DGFVIGALTGEQE--I---DIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        97 dG~VfG~L~~dg~--i---D~~~~~~Li~~a~--~~~vtFH  130 (146)
                      +-+|+..-. .+.  .   ..+.++++.+.|+  |+.+.+|
T Consensus       100 ~~v~~~~g~-~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E  139 (272)
T 2q02_A          100 RALVLCPLN-DGTIVPPEVTVEAIKRLSDLFARYDIQGLVE  139 (272)
T ss_dssp             SEEEECCCC-SSBCCCHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred             CEEEEccCC-CchhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            999974221 111  1   1667788888775  5666665

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=94.74  E-value=0.25  Score=41.36  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCC-----CCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAA-----LSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~-----l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      ..+++|  .|.+.|..|+++||.-|=..-.     -..||.  ..++..|+++++.++|||.-..|-   |+        
T Consensus        13 ~vimdv--~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~ri---gh--------   79 (291)
T 3o07_A           13 GVIMDV--VTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRI---GH--------   79 (291)
T ss_dssp             CEEEEE--SSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEET---TC--------
T ss_pred             Ceeeec--CCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEec---Cc--------
Confidence            345555  8999999999999998876621     256886  678999999999999999888886   33        


Q ss_pred             HHHHHHHHHHHHcCCCEE
Q psy7930          82 EIMALDCHQFVESGADGF   99 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~   99 (146)
                         ..+.+.+.++|+|=|
T Consensus        80 ---~~EAqilea~GaD~I   94 (291)
T 3o07_A           80 ---FVEAQIIEALEVDYI   94 (291)
T ss_dssp             ---HHHHHHHHHTTCSEE
T ss_pred             ---HHHHHHHHHcCCCEE
Confidence               466777888999944

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=94.73  E-value=0.13  Score=40.18  Aligned_cols=87  Identities=16%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+-+..+++.|++.|=+. +....|.  .|...+++++++.+++||.+.     ||  ..+.       +|+..+++.|+
T Consensus       159 ~e~~~~~~~~G~~~i~~t-~~~~~g~~~g~~~~~i~~l~~~~~ipvia~-----GG--I~~~-------ed~~~~~~~Ga  223 (266)
T 2w6r_A          159 RDWVVEVEKRGAGEILLT-SIDRDGTKSGYDTEMIRFVRPLTTLPIIAS-----GG--AGKM-------EHFLEAFLAGA  223 (266)
T ss_dssp             HHHHHHHHHTTCSEEEEE-ETTTTTTCSCCCHHHHHHHGGGCCSCEEEE-----SC--CCSH-------HHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCEEEEE-eecCCCCcCCCCHHHHHHHHHHcCCCEEEe-----CC--CCCH-------HHHHHHHHcCC
Confidence            345688999999999663 3333343  257899999999999998653     44  2223       45666667899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHH
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~  120 (146)
                      ||+++|=-=-.+..+.+.+.+++.
T Consensus       224 dgv~vgsal~~~~~~~~~~~~~l~  247 (266)
T 2w6r_A          224 DAALAASVFHFREIDMRELKEYLK  247 (266)
T ss_dssp             SEEEESTTTC--------------
T ss_pred             HHHHccHHHHcCCCCHHHHHHHHH
Confidence            999999433355566666655554

>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*

Probab=94.73  E-value=0.018  Score=49.26  Aligned_cols=56  Identities=14%  Similarity=0.229  Sum_probs=46.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      .|+...-++|.++++.++++|+|||++=.-..++..|...+..++++|.  ++.+.||
T Consensus        97 ~Yss~d~~v~~~h~~~Ak~aGIDgf~l~w~~~~~~~d~~~l~~~l~aA~~~~~k~~f~  154 (380)
T 4ad1_A           97 RYSSSDPNILTKHMDMFVMARTGVLALTWWNEQDETEAKRIGLILDAADKKKIKVCFH  154 (380)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTEEEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCcccHHHHHHHHHHHHHcCCeEEEE
Confidence            4777778999999999999999999998776666666677888888776  6777665

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=94.66  E-value=0.63  Score=36.97  Aligned_cols=111  Identities=12%  Similarity=0.099  Sum_probs=70.5

Q ss_pred             CHH-HHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCc----------ccC----HHHH
Q psy7930          18 SVA-SALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDF----------VFS----QAEK   81 (146)
Q Consensus        18 s~~-~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF----------~Ys----~~E~   81 (146)
                      +++ ....|.+.|.+-|||... ..+-..| +...++...+..++.+..+--| -.+.+          .++    +.-+
T Consensus        30 ~~~~~l~~~a~~G~~~VEl~~~-~~~~~~~~~~~~~~~~l~~~GL~v~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~  107 (303)
T 3l23_A           30 DVAANLRKVKDMGYSKLELAGY-GKGAIGGVPMMDFKKMAEDAGLKIISSHVN-PVDTSISDPFKAMIFKYSKEVTPKIM  107 (303)
T ss_dssp             CHHHHHHHHHHTTCCEEEECCE-ETTEETTEEHHHHHHHHHHTTCEEEEEECC-CBCTTCSSTTTTBCCSCCTTTHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEeccc-cCcccCCCCHHHHHHHHHHcCCeEEEEecc-cccccccCcccccccccchhhHHHHH
Confidence            444 445788899999999752 1110122 4667777777789888766555 21111          122    4447


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCc-C----HHHHHHHHHHhC--CCC--eEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEI-D----IEFIRQLKTIIG--DRP--ITFH  130 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~i-D----~~~~~~Li~~a~--~~~--vtFH  130 (146)
                      +.+++-|+.++++|++-+|++.......- +    .+.++++.+.|.  |+.  +.+|
T Consensus       108 ~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~E  165 (303)
T 3l23_A          108 EYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYH  165 (303)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEc
Confidence            88999999999999999999754332110 1    234556666665  788  8776

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=94.61  E-value=0.52  Score=39.43  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             HHHHHHHHcCCCEEEecCC--------------C---CCCCCCCC------HHHHHHHHhhC--CCcEEEEEccCCCCCc
Q psy7930          20 ASALAAVRGGADRLELCAA--------------L---SEGGLTPT------LGLYRVIKRLV--LVPVFVMIRVRAGFDF   74 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------------l---~~GGlTPS------~g~i~~~~~~~--~ipv~vMIRP~R~gdF   74 (146)
                      +.|..|+++|.|=|||..+              .   .-||. .-      ..+++.+++.+  +.||.|=|+|   .+|
T Consensus       162 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eiv~aVr~avg~d~pV~vRis~---~~~  237 (363)
T 3l5l_A          162 DAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGS-FDNRSRFLLETLAAVREVWPENLPLTARFGV---LEY  237 (363)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHTTSCTTSCEEEEEEE---ECS
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcC-HHHHHHHHHHHHHHHHHHcCCCceEEEEecc---hhc
Confidence            5678899999999999853              1   12341 11      34777777777  4677665556   345


Q ss_pred             ccCH-HHHHHHHHHHHHHHHcCCCEEEEeeec--CC-----C-CcCHHHHHHHHHHhCCCCe
Q psy7930          75 VFSQ-AEKEIMALDCHQFVESGADGFVIGALT--GE-----Q-EIDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus        75 ~Ys~-~E~~~M~~dI~~~~~~GadG~VfG~L~--~d-----g-~iD~~~~~~Li~~a~~~~v  127 (146)
                      .=.. ...+...+=++.+.++|+|.+-+-.-+  ++     + ..+.+..+++.+.. +.|+
T Consensus       238 ~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPV  298 (363)
T 3l5l_A          238 DGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA-KLPV  298 (363)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-TCCE
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc-CCcE
Confidence            4333 455566666788899999998875422  11     2 24667777776665 3444

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.59  E-value=0.14  Score=38.85  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCC-CCC----HHHHHHHHhhCCCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGL-TPT----LGLYRVIKRLVLVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGl-TPS----~g~i~~~~~~~~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      .+.+..+.++|+|.+++-- +  .|. .|.    ..+++++++.++.|  +++||++ . .             +.++.+
T Consensus        19 ~~~~~~~~~~G~~~i~~~~-~--dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d-~-~-------------~~i~~~   80 (220)
T 2fli_A           19 ASELARIEETDAEYVHIDI-M--DGQFVPNISFGADVVASMRKHSKLVFDCHLMVVD-P-E-------------RYVEAF   80 (220)
T ss_dssp             HHHHHHHHHTTCCEEEEEE-E--BSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSS-G-G-------------GGHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEe-e--cCCCCCccccCHHHHHHHHHhCCCCEEEEEeecC-H-H-------------HHHHHH
Confidence            3567778899999999873 1  233 333    88999999877655  5556665 2 1             147888


Q ss_pred             HHcCCCEEEEeeecC
Q psy7930          92 VESGADGFVIGALTG  106 (146)
Q Consensus        92 ~~~GadG~VfG~L~~  106 (146)
                      .++|+|++.++....
T Consensus        81 ~~~gad~v~vh~~~~   95 (220)
T 2fli_A           81 AQAGADIMTIHTEST   95 (220)
T ss_dssp             HHHTCSEEEEEGGGC
T ss_pred             HHcCCCEEEEccCcc
Confidence            999999999987654

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=94.54  E-value=0.13  Score=43.50  Aligned_cols=72  Identities=18%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      .+.+++..|++.|||-|-+...-  ...+-.|+...+.++++.+  ++||.+     -|| .. +.       .|+..+.
T Consensus       238 ~~~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia-----~GG-I~-~g-------~D~~kal  303 (368)
T 2nli_A          238 QHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVF-----DSG-VR-RG-------EHVAKAL  303 (368)
T ss_dssp             CSHHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEE-----CSS-CC-SH-------HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEE-----ECC-CC-CH-------HHHHHHH
Confidence            78999999999999999985421  1223456788888888877  688754     233 33 22       5667777


Q ss_pred             HcCCCEEEEe
Q psy7930          93 ESGADGFVIG  102 (146)
Q Consensus        93 ~~GadG~VfG  102 (146)
                      .+|||+|.+|
T Consensus       304 alGAd~V~iG  313 (368)
T 2nli_A          304 ASGADVVALG  313 (368)
T ss_dssp             HTTCSEEEEC
T ss_pred             HcCCCEEEEC
Confidence            8999999999

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=94.50  E-value=0.14  Score=43.32  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=51.7

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGL----------TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+.+.+..+++.|||-|-+  ....|+.          .|....+..+.+   ..++||..     -|| -.+.    
T Consensus       152 ~v~t~e~A~~l~~aGaD~I~V--G~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA-----~GG-I~~~----  219 (361)
T 3khj_A          152 NVVTEEATKELIENGADGIKV--GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIA-----DGG-IRYS----  219 (361)
T ss_dssp             EECSHHHHHHHHHTTCSEEEE--CSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEE-----ESC-CCSH----
T ss_pred             cCCCHHHHHHHHHcCcCEEEE--ecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEE-----ECC-CCCH----
Confidence            568999999999999999987  2222221          477777777754   35788753     244 3322    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          +||..+..+|||+|.+|
T Consensus       220 ----~di~kala~GAd~V~vG  236 (361)
T 3khj_A          220 ----GDIGKALAVGASSVMIG  236 (361)
T ss_dssp             ----HHHHHHHHHTCSEEEES
T ss_pred             ----HHHHHHHHcCCCEEEEC
Confidence                67888888999999999

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=94.48  E-value=0.37  Score=37.19  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+-+..+++.|++.|=+.+ ...+|  ..|...+++++++.+++||.+     -||  ..+.       +|+..+++.|+
T Consensus       154 ~e~~~~~~~~G~~~i~~~~-~~~~g~~~g~~~~~~~~l~~~~~ipvia-----~GG--I~~~-------~d~~~~~~~Ga  218 (253)
T 1thf_D          154 RDWVVEVEKRGAGEILLTS-IDRDGTKSGYDTEMIRFVRPLTTLPIIA-----SGG--AGKM-------EHFLEAFLAGA  218 (253)
T ss_dssp             HHHHHHHHHTTCSEEEEEE-TTTTTSCSCCCHHHHHHHGGGCCSCEEE-----ESC--CCSH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCEEEEEe-ccCCCCCCCCCHHHHHHHHHhcCCCEEE-----ECC--CCCH-------HHHHHHHHcCC
Confidence            4668999999999987643 22333  346789999999988999865     244  2222       46666778899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      ||+++|=-=-.+.+|.+...+.+...
T Consensus       219 dgv~vGsal~~~~~~~~~~~~~l~~~  244 (253)
T 1thf_D          219 DAALAASVFHFREIDVRELKEYLKKH  244 (253)
T ss_dssp             SEEEESHHHHTTCSCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHc
Confidence            99999932224567887777666544

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=94.45  E-value=0.14  Score=43.03  Aligned_cols=73  Identities=23%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +.+.+++..|.+.|||-|-+-...  ...|..|+...+.++++.+  ++||..     -|| . .+.       .|+..+
T Consensus       233 ~~~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia-----~GG-I-~~~-------~D~~k~  298 (370)
T 1gox_A          233 VITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFL-----DGG-V-RRG-------TDVFKA  298 (370)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEE-----ESS-C-CSH-------HHHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEE-----ECC-C-CCH-------HHHHHH
Confidence            478999999999999999995421  1222357888899998877  688754     244 2 222       567777


Q ss_pred             HHcCCCEEEEe
Q psy7930          92 VESGADGFVIG  102 (146)
Q Consensus        92 ~~~GadG~VfG  102 (146)
                      ..+|||+|.+|
T Consensus       299 l~~GAdaV~iG  309 (370)
T 1gox_A          299 LALGAAGVFIG  309 (370)
T ss_dssp             HHHTCSEEEEC
T ss_pred             HHcCCCEEeec
Confidence            78899999999

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=94.44  E-value=0.1  Score=45.38  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CC---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGL----------TP---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TP---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      -+.+.+.|..+++.|||-|-+  ....||.          .|   +...+.++++..++||..     -|| ..+.    
T Consensus       303 ~v~t~~~a~~l~~aGad~I~v--g~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia-----~GG-I~~~----  370 (514)
T 1jcn_A          303 NVVTAAQAKNLIDAGVDGLRV--GMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIA-----DGG-IQTV----  370 (514)
T ss_dssp             EECSHHHHHHHHHHTCSEEEE--CSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEE-----ESC-CCSH----
T ss_pred             ccchHHHHHHHHHcCCCEEEE--CCCCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEE-----ECC-CCCH----
Confidence            468999999999999999998  2233443          12   345666677777899854     233 3222    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEee
Q psy7930          82 EIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~  103 (146)
                          .|+..+..+|||++.+|=
T Consensus       371 ----~di~kala~GAd~V~iG~  388 (514)
T 1jcn_A          371 ----GHVVKALALGASTVMMGS  388 (514)
T ss_dssp             ----HHHHHHHHTTCSEEEEST
T ss_pred             ----HHHHHHHHcCCCeeeECH
Confidence                577788889999999994

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=94.44  E-value=0.064  Score=41.11  Aligned_cols=107  Identities=8%  Similarity=-0.072  Sum_probs=66.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC-CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH----HHHHHHHHHHHHHc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG-LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE----KEIMALDCHQFVES   94 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG-lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E----~~~M~~dI~~~~~~   94 (146)
                      +.+..|.+.|.+-|||...-...- ...+..-+++..+..++.+..+--|   .+|.-.+.+    ++.+++-|+.++++
T Consensus        20 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~A~~l   96 (281)
T 3u0h_A           20 LYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLP---LNLYDSEPVFLRELSLLPDRARLCARL   96 (281)
T ss_dssp             HHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECC---SCTTSCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEeccc---ccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            456678899999999986321000 0113455555666668877544333   355544433    45678899999999


Q ss_pred             CCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEe
Q psy7930          95 GADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      |++.+++++.. .+.-+        .+.++++.+.|+  |+.+.+|
T Consensus        97 G~~~v~~~~~p-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  141 (281)
T 3u0h_A           97 GARSVTAFLWP-SMDEEPVRYISQLARRIRQVAVELLPLGMRVGLE  141 (281)
T ss_dssp             TCCEEEEECCS-EESSCHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             CCCEEEEeecC-CCCCcchhhHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence            99999987532 22211        355666666665  6777776

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=94.43  E-value=0.33  Score=40.37  Aligned_cols=96  Identities=21%  Similarity=0.336  Sum_probs=61.7

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDF   74 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF   74 (146)
                      +.|..|.++|.|=|||..+-                 .-|| +.      ...+++.+++.+  +.||-|=|+| -  +|
T Consensus       156 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGG-slenR~r~~~eiv~aVR~avG~d~pV~vRls~-~--~~  231 (349)
T 3hgj_A          156 EGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGG-SLENRMRFPLQVAQAVREVVPRELPLFVRVSA-T--DW  231 (349)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHSCTTSCEEEEEES-C--CC
T ss_pred             HHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCc-CHHHHHHHHHHHHHHHHHHhcCCceEEEEecc-c--cc
Confidence            56788999999999997531                 1244 22      145788888887  6788666666 3  22


Q ss_pred             c---cCHHHHHHHHHHHHHHHHcCCCEEEEee--ecCC------CCcCHHHHHHHHHHh
Q psy7930          75 V---FSQAEKEIMALDCHQFVESGADGFVIGA--LTGE------QEIDIEFIRQLKTII  122 (146)
Q Consensus        75 ~---Ys~~E~~~M~~dI~~~~~~GadG~VfG~--L~~d------g~iD~~~~~~Li~~a  122 (146)
                      .   ++.+|   ..+=++.+.++|+|.+-+..  ..++      ...+.+..+++.+..
T Consensus       232 ~~~g~~~~~---~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~  287 (349)
T 3hgj_A          232 GEGGWSLED---TLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV  287 (349)
T ss_dssp             STTSCCHHH---HHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH
T ss_pred             cCCCCCHHH---HHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc
Confidence            2   33343   44557778889999988742  3322      125677777776655

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=94.30  E-value=0.12  Score=45.22  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC--C--------CCCHHHHHHHHhhC---------CCcEEEEEccCCCCCcc
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG--L--------TPTLGLYRVIKRLV---------LVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG--l--------TPS~g~i~~~~~~~---------~ipv~vMIRP~R~gdF~   75 (146)
                      .+.+.+++..+.+.|||-|.+  ...-|+  +        .|....+..+.+..         ++||..      .|+..
T Consensus       291 ~V~t~~~a~~l~~aGad~I~V--g~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia------~GGi~  362 (503)
T 1me8_A          291 NIVDGEGFRYLADAGADFIKI--GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCS------DGGIV  362 (503)
T ss_dssp             EECSHHHHHHHHHHTCSEEEE--CSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEE------ESCCC
T ss_pred             cccCHHHHHHHHHhCCCeEEe--cccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEE------eCCCC
Confidence            478899999999999999999  333332  1        36666666665443         577643      23344


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      +.        .||..+..+||+++.+|-
T Consensus       363 ~~--------~di~kAlalGA~~V~iG~  382 (503)
T 1me8_A          363 YD--------YHMTLALAMGADFIMLGR  382 (503)
T ss_dssp             SH--------HHHHHHHHTTCSEEEESH
T ss_pred             CH--------HHHHHHHHcCCCEEEECc
Confidence            44        688899999999999994

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=94.25  E-value=0.21  Score=38.42  Aligned_cols=70  Identities=20%  Similarity=0.194  Sum_probs=51.8

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc---
Q psy7930          19 VASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES---   94 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~---   94 (146)
                      .+.+..+++.|++.|=+.+--..| +..|....++++++..++||.+     -||=.  +.       +|+..++++   
T Consensus       152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia-----~GGI~--~~-------~d~~~~~~~~~~  217 (244)
T 2y88_A          152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIA-----SGGVS--SL-------DDLRAIATLTHR  217 (244)
T ss_dssp             HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEE-----ESCCC--SH-------HHHHHHHTTGGG
T ss_pred             HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEE-----ECCCC--CH-------HHHHHHHhhccC
Confidence            677899999999999665522222 2357889999999988899865     25522  22       677778888   


Q ss_pred             CCCEEEEe
Q psy7930          95 GADGFVIG  102 (146)
Q Consensus        95 GadG~VfG  102 (146)
                      |+|||++|
T Consensus       218 Gad~v~vG  225 (244)
T 2y88_A          218 GVEGAIVG  225 (244)
T ss_dssp             TEEEEEEC
T ss_pred             CCCEEEEc
Confidence            99999999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=94.18  E-value=0.17  Score=44.55  Aligned_cols=74  Identities=22%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCC---------CC-CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEG---------GL-TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~G---------Gl-TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      -+.+.+.|..+++.|||-|-+  +...|         |. .|....+..+.+   ..++||.+     -|| ..+.    
T Consensus       304 ~v~t~e~a~~~~~aGad~i~v--g~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa-----~GG-I~~~----  371 (511)
T 3usb_A          304 NVATAEATKALIEAGANVVKV--GIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIA-----DGG-IKYS----  371 (511)
T ss_dssp             EECSHHHHHHHHHHTCSEEEE--CSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE-----ESC-CCSH----
T ss_pred             eeccHHHHHHHHHhCCCEEEE--CCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEE-----eCC-CCCH----
Confidence            567999999999999999986  22222         22 677777766644   34688754     233 3333    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeee
Q psy7930          82 EIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                          .||..+..+||+++++|=.
T Consensus       372 ----~di~kala~GA~~V~vGs~  390 (511)
T 3usb_A          372 ----GDMVKALAAGAHVVMLGSM  390 (511)
T ss_dssp             ----HHHHHHHHTTCSEEEESTT
T ss_pred             ----HHHHHHHHhCchhheecHH
Confidence                6778888999999999943

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=94.16  E-value=0.22  Score=41.24  Aligned_cols=95  Identities=17%  Similarity=0.050  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      ++..|.+.|||=|-+--++..+...-....+.++++.   .++|+.+|- | +|..+..++ |  ......+.+.++|||
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~-~-~G~~~~~d~-e--~i~~aariA~elGAD  204 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVT-G-VGKDMVRDQ-R--YFSLATRIAAEMGAQ  204 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEE-C-C----CCSH-H--HHHHHHHHHHHTTCS
T ss_pred             HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEEC-C-CCCccCCCH-H--HHHHHHHHHHHhCCC
Confidence            5666789999999887765422211123333344433   379998875 7 777776543 2  334677889999999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhCCCCeE
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~~~~vt  128 (146)
                      .|-+.. ++      +.++++++.+ ++|+.
T Consensus       205 ~VKt~~-t~------e~~~~vv~~~-~vPVv  227 (295)
T 3glc_A          205 IIKTYY-VE------KGFERIVAGC-PVPIV  227 (295)
T ss_dssp             EEEEEC-CT------TTHHHHHHTC-SSCEE
T ss_pred             EEEeCC-CH------HHHHHHHHhC-CCcEE
Confidence            999984 43      2356666554 45554

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=94.15  E-value=0.16  Score=43.37  Aligned_cols=73  Identities=22%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +.+.++|..|++.|||-|-+-..-  ...+-.|+...+.++++.+  ++||.+     -|| ... .       .|+..+
T Consensus       260 v~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia-----~GG-I~~-g-------~Dv~ka  325 (392)
T 2nzl_A          260 ILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFL-----DGG-VRK-G-------TDVLKA  325 (392)
T ss_dssp             ECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEE-----CSS-CCS-H-------HHHHHH
T ss_pred             cCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEE-----ECC-CCC-H-------HHHHHH
Confidence            478999999999999999985321  1223356778888888876  478754     233 332 2       567777


Q ss_pred             HHcCCCEEEEe
Q psy7930          92 VESGADGFVIG  102 (146)
Q Consensus        92 ~~~GadG~VfG  102 (146)
                      ..+|||+|.+|
T Consensus       326 lalGAd~V~iG  336 (392)
T 2nzl_A          326 LALGAKAVFVG  336 (392)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHhCCCeeEEC
Confidence            78999999999

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=94.05  E-value=0.16  Score=44.39  Aligned_cols=72  Identities=22%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC---------C-CCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG---------L-TPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG---------l-TPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+.+.+..++++|||-|-+-  ...|+         . .|....+.++.+.+   ++||..     -|| ..+.    
T Consensus       277 ~v~t~e~a~~l~~aGaD~I~vg--~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa-----~GG-I~~~----  344 (490)
T 4avf_A          277 NIATAEAAKALAEAGADAVKVG--IGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIA-----DGG-IRFS----  344 (490)
T ss_dssp             EECSHHHHHHHHHTTCSEEEEC--SSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEE-----ESC-CCSH----
T ss_pred             eeCcHHHHHHHHHcCCCEEEEC--CCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEE-----eCC-CCCH----
Confidence            3789999999999999999872  11221         1 57777788877744   788754     244 3333    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          .||..+.++||+++.+|
T Consensus       345 ----~di~kal~~GAd~V~vG  361 (490)
T 4avf_A          345 ----GDLAKAMVAGAYCVMMG  361 (490)
T ss_dssp             ----HHHHHHHHHTCSEEEEC
T ss_pred             ----HHHHHHHHcCCCeeeec
Confidence                67777788999999999

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=94.04  E-value=0.15  Score=43.36  Aligned_cols=70  Identities=26%  Similarity=0.206  Sum_probs=48.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCC----------CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGG----------LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GG----------lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +.++++|+.+++.|||-|-+ + ..-|+          -.|....+.++.+... ||..     -|| ..+.        
T Consensus       149 V~T~e~A~~a~~aGaD~I~V-g-~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIA-----dGG-I~~~--------  211 (361)
T 3r2g_A          149 VATYAGADYLASCGADIIKA-G-IGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVA-----DGG-IKTS--------  211 (361)
T ss_dssp             ECSHHHHHHHHHTTCSEEEE-C-CSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEE-----ESC-CCSH--------
T ss_pred             cCCHHHHHHHHHcCCCEEEE-c-CCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEE-----ECC-CCCH--------
Confidence            67999999999999999998 2 22221          1355555665555444 5532     133 3333        


Q ss_pred             HHHHHHHHcCCCEEEEe
Q psy7930          86 LDCHQFVESGADGFVIG  102 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG  102 (146)
                      .||..+.++|||+|.+|
T Consensus       212 ~di~kALa~GAd~V~iG  228 (361)
T 3r2g_A          212 GDIVKALAFGADFVMIG  228 (361)
T ss_dssp             HHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHcCCCEEEEC
Confidence            68888889999999999

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}

Probab=94.03  E-value=1.1  Score=35.77  Aligned_cols=80  Identities=14%  Similarity=-0.007  Sum_probs=52.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC------CHHHHHHHHhhCCCc---EEEEEc-cCCCCCcccCH-----HHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP------TLGLYRVIKRLVLVP---VFVMIR-VRAGFDFVFSQ-----AEKEIM   84 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP------S~g~i~~~~~~~~ip---v~vMIR-P~R~gdF~Ys~-----~E~~~M   84 (146)
                      +-+..+.+.|.+-|||...-.. .. |      ....++...+..++.   +..++- | +..++.-.+     ..++.+
T Consensus        35 ~~l~~~~~~G~~~vEl~~~~~~-~~-~~~~~~~~~~~l~~~l~~~gL~~~~i~~~~~~~-~~~~l~~~d~~~r~~~~~~~  111 (335)
T 2qw5_A           35 AHIKKLQRFGYSGFEFPIAPGL-PE-NYAQDLENYTNLRHYLDSEGLENVKISTNVGAT-RTFDPSSNYPEQRQEALEYL  111 (335)
T ss_dssp             HHHHHHHHTTCCEEEEECCCCC-GG-GHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCC-SSSCTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEecCCCc-cc-ccccchHHHHHHHHHHHHCCCCcceeEEEeccC-CCCCCCCCCHHHHHHHHHHH
Confidence            4567788999999999753111 11 2      233455555566888   776532 4 444444322     235889


Q ss_pred             HHHHHHHHHcCCCEEEEee
Q psy7930          85 ALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~  103 (146)
                      ++-|+.++++|++-+ +|.
T Consensus       112 ~~~i~~A~~lG~~~v-~~~  129 (335)
T 2qw5_A          112 KSRVDITAALGGEIM-MGP  129 (335)
T ss_dssp             HHHHHHHHHTTCSEE-EEC
T ss_pred             HHHHHHHHHcCCCEE-ecc
Confidence            999999999999988 553

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=94.01  E-value=0.17  Score=42.49  Aligned_cols=73  Identities=18%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC----------CCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG----------LTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG----------lTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.|.++|..|++.|||-|-+-.  .-|+          ..|....+..+.+.   .++||..     -|| ....    
T Consensus       168 ~v~t~e~A~~a~~aGaD~I~v~~--g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa-----~GG-I~~g----  235 (351)
T 2c6q_A          168 NVVTGEMVEELILSGADIIKVGI--GPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIIS-----DGG-CSCP----  235 (351)
T ss_dssp             EECSHHHHHHHHHTTCSEEEECS--SCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEE-----ESC-CCSH----
T ss_pred             eCCCHHHHHHHHHhCCCEEEECC--CCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEE-----eCC-CCCH----
Confidence            47889999999999999996631  1111          24666666666543   4788754     122 2222    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEee
Q psy7930          82 EIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~  103 (146)
                          .||..+..+|||+|.+|=
T Consensus       236 ----~di~kAlalGA~~V~vG~  253 (351)
T 2c6q_A          236 ----GDVAKAFGAGADFVMLGG  253 (351)
T ss_dssp             ----HHHHHHHHTTCSEEEEST
T ss_pred             ----HHHHHHHHcCCCceeccH
Confidence                688899999999999984

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=93.99  E-value=0.6  Score=38.39  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++.+.....++||.=|-.... -..||   |...++.+++.+++||   +|=    ||..++.+       |..++.+|
T Consensus        64 ~dp~~iA~~~~~GA~aiSVLTd~~~F~G---s~~~L~~vr~~v~lPv---LrK----DFiid~yQ-------I~eAr~~G  126 (258)
T 4a29_A           64 RDPIEYAKFMERYAVGLSITTEEKYFNG---SYETLRKIASSVSIPI---LMS----DFIVKESQ-------IDDAYNLG  126 (258)
T ss_dssp             CCHHHHHHHHTTTCSEEEEECCSTTTCC---CHHHHHHHHTTCSSCE---EEE----SCCCSHHH-------HHHHHHHT
T ss_pred             CCHHHHHHHHhCCCeEEEEeCCCCCCCC---CHHHHHHHHHhcCCCE---eec----cccccHHH-------HHHHHHcC
Confidence            4566666677899999987653 34455   7899999999999997   565    89999755       56688999


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      ||.|.+=+    .-++.+.+++|.+.|+  ||.
T Consensus       127 ADaILLI~----a~L~~~~l~~l~~~A~~lGl~  155 (258)
T 4a29_A          127 ADTVLLIV----KILTERELESLLEYARSYGME  155 (258)
T ss_dssp             CSEEEEEG----GGSCHHHHHHHHHHHHHTTCC
T ss_pred             CCeeehHH----hhcCHHHHHHHHHHHHHHhHH
Confidence            99986421    1356678999999997  554

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=93.98  E-value=0.11  Score=42.31  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=54.5

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC--CcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL--VPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~--ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      ..+++-++|++++..|.+.|||.|=|=+        -+...++++++.++  .| ++-|-+ -|| ..  .       +.
T Consensus       183 ~~i~vev~tlee~~~A~~aGaD~I~ld~--------~~~~~l~~~v~~l~~~~~-~~~i~A-sGG-I~--~-------~n  242 (273)
T 2b7n_A          183 AKIEIECESFEEAKNAMNAGADIVMCDN--------LSVLETKEIAAYRDAHYP-FVLLEA-SGN-IS--L-------ES  242 (273)
T ss_dssp             CCEEEEESSHHHHHHHHHHTCSEEEEET--------CCHHHHHHHHHHHHHHCT-TCEEEE-ESS-CC--T-------TT
T ss_pred             ceEEEEcCCHHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCC-CcEEEE-ECC-CC--H-------HH
Confidence            4688889999999999999999999843        34677777666542  11 123334 455 42  1       45


Q ss_pred             HHHHHHcCCCEEEEeeec
Q psy7930          88 CHQFVESGADGFVIGALT  105 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~  105 (146)
                      |..+.+.|+|+|.+|.++
T Consensus       243 i~~~~~aGaD~i~vGs~i  260 (273)
T 2b7n_A          243 INAYAKSGVDAISVGALI  260 (273)
T ss_dssp             HHHHHTTTCSEEECTHHH
T ss_pred             HHHHHHcCCcEEEEcHHh
Confidence            778899999999999854

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=93.96  E-value=0.19  Score=41.41  Aligned_cols=72  Identities=18%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC-----------CC-------CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccC
Q psy7930          17 DSVASALAAVRGGADRLELCAA-----------LS-------EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFS   77 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~-----------l~-------~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys   77 (146)
                      .+.+++..|.+.|||-|.+-..           -.       ..+-.|+...++++++.+ ++||.+-     || . .|
T Consensus       190 ~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~-----GG-I-~~  262 (349)
T 1p0k_A          190 MSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIAS-----GG-L-QD  262 (349)
T ss_dssp             CCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEE-----SS-C-CS
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEE-----CC-C-CC
Confidence            5799999999999999999532           00       122334566778887776 7887542     44 2 22


Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          78 QAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        78 ~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .       +|+..+..+|||+|.+|
T Consensus       263 ~-------~d~~k~l~~GAd~V~iG  280 (349)
T 1p0k_A          263 A-------LDVAKAIALGASCTGMA  280 (349)
T ss_dssp             H-------HHHHHHHHTTCSEEEEC
T ss_pred             H-------HHHHHHHHcCCCEEEEc
Confidence            2       56667777899999999

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=93.96  E-value=0.17  Score=42.26  Aligned_cols=69  Identities=17%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCC---------CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTP---------TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP---------S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      .+-+..+++.|+|-|.+-..-..+|++|         .+.+++.+++.+ ++||.+     -||  ..|.++.+.     
T Consensus       147 ~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVia-----nGg--I~s~eda~~-----  214 (350)
T 3b0p_A          147 AQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVT-----NGG--IRSLEEALF-----  214 (350)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEE-----ESS--CCSHHHHHH-----
T ss_pred             HHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEE-----ECC--cCCHHHHHH-----
Confidence            4556788999999999876444345554         478899999988 898753     244  334555444     


Q ss_pred             HHHHHcCCCEEEEe
Q psy7930          89 HQFVESGADGFVIG  102 (146)
Q Consensus        89 ~~~~~~GadG~VfG  102 (146)
                        +.+ |||||.+|
T Consensus       215 --~l~-GaD~V~iG  225 (350)
T 3b0p_A          215 --HLK-RVDGVMLG  225 (350)
T ss_dssp             --HHT-TSSEEEEC
T ss_pred             --HHh-CCCEEEEC
Confidence              334 99999998

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=93.86  E-value=0.17  Score=41.60  Aligned_cols=72  Identities=18%  Similarity=0.102  Sum_probs=51.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCC-----------C---------CCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcc
Q psy7930          17 DSVASALAAVRGGADRLELCAAL-----------S---------EGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l-----------~---------~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~   75 (146)
                      .+.+++..+++.|+|-|.+-..-           .         ..+-.|+...+.++++.+ ++||...     || ..
T Consensus       193 ~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~-----GG-I~  266 (332)
T 1vcf_A          193 LSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVAS-----GG-VY  266 (332)
T ss_dssp             CCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEE-----SS-CC
T ss_pred             CCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEE-----CC-CC
Confidence            68899999999999999995431           0         122236677788888888 7887552     44 22


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                       |.       .|+..+..+|||+|.+|
T Consensus       267 -~~-------~d~~kal~~GAd~V~ig  285 (332)
T 1vcf_A          267 -TG-------TDGAKALALGADLLAVA  285 (332)
T ss_dssp             -SH-------HHHHHHHHHTCSEEEEC
T ss_pred             -CH-------HHHHHHHHhCCChHhhh
Confidence             22       46666777899999998

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=93.72  E-value=0.15  Score=42.61  Aligned_cols=78  Identities=24%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||=|+|++++..|.++|||.|=|= +       .+.+.++++.+...-  ++.|-. .||==          .+.|+
T Consensus       210 ~~ieVEvdtlde~~eAl~aGaD~I~LD-n-------~~~~~l~~av~~i~~--~v~iea-SGGI~----------~~~i~  268 (298)
T 3gnn_A          210 VPVQIEVETLDQLRTALAHGARSVLLD-N-------FTLDMMRDAVRVTEG--RAVLEV-SGGVN----------FDTVR  268 (298)
T ss_dssp             CCCEEEESSHHHHHHHHHTTCEEEEEE-S-------CCHHHHHHHHHHHTT--SEEEEE-ESSCS----------TTTHH
T ss_pred             CCEEEEeCCHHHHHHHHHcCCCEEEEC-C-------CCHHHHHHHHHHhCC--CCeEEE-EcCCC----------HHHHH
Confidence            457888999999999999999998774 3       466888888775521  344555 56631          24577


Q ss_pred             HHHHcCCCEEEEeeecCCC
Q psy7930          90 QFVESGADGFVIGALTGEQ  108 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg  108 (146)
                      .+.+.|+|+|.+|.|+.+-
T Consensus       269 ~~a~tGVD~isvG~lt~sa  287 (298)
T 3gnn_A          269 AIAETGVDRISIGALTKDV  287 (298)
T ss_dssp             HHHHTTCSEEECGGGGTSC
T ss_pred             HHHHcCCCEEEECCeecCC
Confidence            7889999999999998764

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=93.71  E-value=0.41  Score=36.60  Aligned_cols=98  Identities=5%  Similarity=-0.077  Sum_probs=63.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC----C----CCCC---HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEG----G----LTPT---LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G----G----lTPS---~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +.+..+.+.|.+-|||...-..+    |    ...+   ..-++...+..++.+..+--+ ..       .-.+.+++-|
T Consensus        26 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~-------~~~~~~~~~i   97 (262)
T 3p6l_A           26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY-VA-------EKSSDWEKMF   97 (262)
T ss_dssp             HHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEE-CC-------SSTTHHHHHH
T ss_pred             HHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc-CC-------ccHHHHHHHH
Confidence            34557889999999998643211    1    1223   344555555668887666544 22       1234578899


Q ss_pred             HHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930          89 HQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA  132 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA  132 (146)
                      +.++++|++-+|+..    |   .+.++++.+.|+  |+.+.+|=-
T Consensus        98 ~~A~~lGa~~v~~~~----~---~~~~~~l~~~a~~~gv~l~~En~  136 (262)
T 3p6l_A           98 KFAKAMDLEFITCEP----A---LSDWDLVEKLSKQYNIKISVHNH  136 (262)
T ss_dssp             HHHHHTTCSEEEECC----C---GGGHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHcCCCEEEecC----C---HHHHHHHHHHHHHhCCEEEEEeC
Confidence            999999999999973    2   245567777765  677776643

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=93.70  E-value=0.14  Score=41.37  Aligned_cols=83  Identities=14%  Similarity=-0.021  Sum_probs=52.8

Q ss_pred             eeEEEecCHHHH----HHHHHcCCC---EEEecCC--CCCC----CCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930          11 TLEVCVDSVASA----LAAVRGGAD---RLELCAA--LSEG----GLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        11 ~lEvcv~s~~~a----~~A~~~GAd---RIELc~~--l~~G----GlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~   75 (146)
                      ..-+...++++.    ..+.+.|+|   -|||+-+  ...|    |-+|.  ..+++.+++.+++||.|.++| -     
T Consensus        97 ~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~-~-----  170 (314)
T 2e6f_A           97 FLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPP-Y-----  170 (314)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECC-C-----
T ss_pred             EEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECC-C-----
Confidence            334555565544    445677999   9999742  1123    11221  347888888889999999999 2     


Q ss_pred             cCHHHHHHHHHHHHHHHHcC-CCEEEEe
Q psy7930          76 FSQAEKEIMALDCHQFVESG-ADGFVIG  102 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~G-adG~VfG  102 (146)
                      ++.+++..+   .+.+.++| +|+|++-
T Consensus       171 ~~~~~~~~~---a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          171 FDIAHFDTA---AAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             CCHHHHHHH---HHHHHTCTTEEEEEEC
T ss_pred             CCHHHHHHH---HHHHHhcCCceEEEEe
Confidence            255444333   55678899 9999853

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=93.69  E-value=0.76  Score=35.71  Aligned_cols=111  Identities=14%  Similarity=-0.011  Sum_probs=63.8

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC---CCCCCHH---HHHHHHhhCCCcEEEEEccCCCCCccc---CHH----HHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEG---GLTPTLG---LYRVIKRLVLVPVFVMIRVRAGFDFVF---SQA----EKEIMAL   86 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G---GlTPS~g---~i~~~~~~~~ipv~vMIRP~R~gdF~Y---s~~----E~~~M~~   86 (146)
                      +.+..+.+.|.+-|||.......   -...+..   -++...+..++.+..+--| -...|..   +++    -++.+++
T Consensus        34 ~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~~~~~l~~~d~~~r~~~~~~~~~  112 (295)
T 3cqj_A           34 ERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLS-AHRRFPLGSEDDAVRAQGLEIMRK  112 (295)
T ss_dssp             HHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEG-GGGTSCTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecC-cccCCCCCCCCHHHHHHHHHHHHH
Confidence            34556778899999998532100   0112333   3444445568888765433 1111212   122    3678999


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEee
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      -|+.++++|++-+|+.........+        .+.++++.+.|+  |+.+.+|=
T Consensus       113 ~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn  167 (295)
T 3cqj_A          113 AIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEI  167 (295)
T ss_dssp             HHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             HHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence            9999999999999885322101111        245666666665  67777764

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=93.49  E-value=0.055  Score=42.03  Aligned_cols=71  Identities=10%  Similarity=0.021  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCC--CCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVASALAAVRGGADRLELCAALSE--GGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~--GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      ..+-+..++++||+.|++-. +..  .+..+....+++++ ..++||.++      | +..+.+       |++.+.+.|
T Consensus        32 ~~~~a~~~~~~Gad~i~v~d-~~~~~~~~~~~~~~i~~i~-~~~ipvi~~------G-gi~~~~-------~~~~~~~~G   95 (241)
T 1qo2_A           32 PVELVEKLIEEGFTLIHVVD-LSNAIENSGENLPVLEKLS-EFAEHIQIG------G-GIRSLD-------YAEKLRKLG   95 (241)
T ss_dssp             HHHHHHHHHHTTCCCEEEEE-HHHHHHCCCTTHHHHHHGG-GGGGGEEEE------S-SCCSHH-------HHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCEEEEec-ccccccCCchhHHHHHHHH-hcCCcEEEE------C-CCCCHH-------HHHHHHHCC
Confidence            34567788999999999853 222  24446788888888 778998664      2 333333       566677789


Q ss_pred             CCEEEEeee
Q psy7930          96 ADGFVIGAL  104 (146)
Q Consensus        96 adG~VfG~L  104 (146)
                      |||+++|-.
T Consensus        96 ad~V~lg~~  104 (241)
T 1qo2_A           96 YRRQIVSSK  104 (241)
T ss_dssp             CCEEEECHH
T ss_pred             CCEEEECch
Confidence            999999865

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=93.46  E-value=0.088  Score=43.56  Aligned_cols=74  Identities=24%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-----CcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-----VPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-----ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..+++-++|++++..|.+.|||.|=|-+        .+...++++++.++     +||.    . -|| ...        
T Consensus       198 ~~i~vev~tlee~~~A~~aGaD~I~ld~--------~~~~~l~~~v~~l~~~~~~~~I~----A-SGG-It~--------  255 (299)
T 2jbm_A          198 LKVEVECSSLQEAVQAAEAGADLVLLDN--------FKPEELHPTATVLKAQFPSVAVE----A-SGG-ITL--------  255 (299)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEEEES--------CCHHHHHHHHHHHHHHCTTSEEE----E-ESS-CCT--------
T ss_pred             CeEEEecCCHHHHHHHHHcCCCEEEECC--------CCHHHHHHHHHHhhccCCCeeEE----E-ECC-CCH--------
Confidence            4678888999999999999999999843        34677777666542     4443    4 344 422        


Q ss_pred             HHHHHHHHHcCCCEEEEeeecC
Q psy7930          85 ALDCHQFVESGADGFVIGALTG  106 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~  106 (146)
                       +.|+.+.+.|+|+|.+|.++.
T Consensus       256 -~ni~~~~~aGaD~i~vGs~i~  276 (299)
T 2jbm_A          256 -DNLPQFCGPHIDVISMGMLTQ  276 (299)
T ss_dssp             -TTHHHHCCTTCCEEECTHHHH
T ss_pred             -HHHHHHHHCCCCEEEEChhhc
Confidence             457788899999999998653

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=93.45  E-value=0.17  Score=39.15  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCccc----------CHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF----------SQAEKEIMA   85 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y----------s~~E~~~M~   85 (146)
                      +.+.+++..+.+.|||.+-+-+.+-     +...+++.+ +..+-.+.+.+-+ +.| .++          +..|+    
T Consensus        82 i~~~~~~~~~~~~Gad~V~lg~~~l-----~~p~~~~~~-~~~g~~i~~~~d~-~~~-~v~~~g~~~~~~~~~~e~----  149 (241)
T 1qo2_A           82 IRSLDYAEKLRKLGYRRQIVSSKVL-----EDPSFLKSL-REIDVEPVFSLDT-RGG-RVAFKGWLAEEEIDPVSL----  149 (241)
T ss_dssp             CCSHHHHHHHHHTTCCEEEECHHHH-----HCTTHHHHH-HTTTCEEEEEEEE-ETT-EECCTTCSSCSCCCHHHH----
T ss_pred             CCCHHHHHHHHHCCCCEEEECchHh-----hChHHHHHH-HHcCCcEEEEEEe-cCC-EEEECCceecCCCCHHHH----
Confidence            4678999999999999997765321     233567777 5554335555666 433 333          43443    


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCC---CcCHHHHHHHHHHhCCCCeE
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQ---EIDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg---~iD~~~~~~Li~~a~~~~vt  128 (146)
                        ++.+.++|++.|++--.+.||   .+|.+.++++.+.. +.|+.
T Consensus       150 --~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~-~iPvi  192 (241)
T 1qo2_A          150 --LKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEA-EVKVL  192 (241)
T ss_dssp             --HHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHH-TCEEE
T ss_pred             --HHHHHhCCCCEEEEEeecccccCCcCCHHHHHHHHHhc-CCcEE
Confidence              345667999999986665554   27999999998876 45554

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=93.43  E-value=0.4  Score=41.59  Aligned_cols=69  Identities=19%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..+.+..+.++|+|.|+|..+.   |.. .....++.+++.+ ++||.+-       + +-+.       ++++.+.++
T Consensus       255 ~~~~~a~~~~~aG~d~v~i~~~~---G~~~~~~~~i~~i~~~~~~~pvi~~-------~-v~t~-------~~a~~l~~a  316 (514)
T 1jcn_A          255 DDKYRLDLLTQAGVDVIVLDSSQ---GNSVYQIAMVHYIKQKYPHLQVIGG-------N-VVTA-------AQAKNLIDA  316 (514)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSC---CCSHHHHHHHHHHHHHCTTCEEEEE-------E-ECSH-------HHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCEEEeeccC---CcchhHHHHHHHHHHhCCCCceEec-------c-cchH-------HHHHHHHHc
Confidence            34688889999999999997642   322 1357789998888 7888651       0 1122       347888899


Q ss_pred             CCCEEEEee
Q psy7930          95 GADGFVIGA  103 (146)
Q Consensus        95 GadG~VfG~  103 (146)
                      |+|+|++|.
T Consensus       317 Gad~I~vg~  325 (514)
T 1jcn_A          317 GVDGLRVGM  325 (514)
T ss_dssp             TCSEEEECS
T ss_pred             CCCEEEECC
Confidence            999999964

>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B

Probab=93.40  E-value=0.05  Score=46.66  Aligned_cols=56  Identities=11%  Similarity=0.135  Sum_probs=44.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEee
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      .||..+-+++.++++.++++|+|||++=.-..+...| ..+..++++|.  ++.+.||-
T Consensus        96 ~ysS~D~~v~~~hi~~ak~aGIDgfal~w~~~~~~~d-~~l~~~~~aA~~~g~k~~f~~  153 (382)
T 4acy_A           96 TYSSNDPEIIRKHIRMHIKANVGVLSVTWWGESDYGN-QSVSLLLDEAAKVGAKVCFHI  153 (382)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTEEEEEEEECGGGGTTC-HHHHHHHHHHHHHTCEEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCchH-HHHHHHHHHHHHcCCEEEEEe
Confidence            4777778999999999999999999998754444456 57788888887  78887763

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=93.40  E-value=0.46  Score=36.48  Aligned_cols=109  Identities=12%  Similarity=0.008  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC--CCCCCHHH---HHHHHhhCCCcEEEEEccCCCCCcccC----HHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEG--GLTPTLGL---YRVIKRLVLVPVFVMIRVRAGFDFVFS----QAEKEIMALDCHQ   90 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~---i~~~~~~~~ipv~vMIRP~R~gdF~Ys----~~E~~~M~~dI~~   90 (146)
                      +.+..|.+.|.+-|||...-..+  ....+...   ++...+..+++...+--| -..++.-+    +.-++.+++.|+.
T Consensus        18 ~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~h~~-~~~~l~s~~~~r~~~~~~~~~~i~~   96 (270)
T 3aam_A           18 GAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAVIHAS-YLVNLGAEGELWEKSVASLADDLEK   96 (270)
T ss_dssp             HHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEEECC-TTCCTTCSSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEEecC-cccCCCCCHHHHHHHHHHHHHHHHH
Confidence            34567888999999995421111  11122334   444445567733334445 33233211    2357889999999


Q ss_pred             HHHcCCCEEEE--eeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930          91 FVESGADGFVI--GALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus        91 ~~~~GadG~Vf--G~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      ++++|++.+|+  |.. .+ ..=.+.++++.+.|.   ++.+.++-
T Consensus        97 a~~lGa~~vv~h~g~~-~~-~~~~~~l~~l~~~a~~~~gv~l~lEn  140 (270)
T 3aam_A           97 AALLGVEYVVVHPGSG-RP-ERVKEGALKALRLAGVRSRPVLLVEN  140 (270)
T ss_dssp             HHHHTCCEEEECCCBS-CH-HHHHHHHHHHHHHHTCCSSSEEEEEC
T ss_pred             HHHcCCCEEEECCCCC-CH-HHHHHHHHHHHHhhcccCCCEEEEec
Confidence            99999999998  443 11 223466778888885   56665543

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=93.38  E-value=0.48  Score=40.23  Aligned_cols=93  Identities=16%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +..+.+..+.++|+|-|++.+.   +|.++. ...++.+++.. ++||.+        ..+-|.+       +++.+.++
T Consensus       108 ~~~~~~~~lieaGvd~I~idta---~G~~~~~~~~I~~ik~~~p~v~Vi~--------G~v~t~e-------~A~~a~~a  169 (366)
T 4fo4_A          108 GNEERVKALVEAGVDVLLIDSS---HGHSEGVLQRIRETRAAYPHLEIIG--------GNVATAE-------GARALIEA  169 (366)
T ss_dssp             TCHHHHHHHHHTTCSEEEEECS---CTTSHHHHHHHHHHHHHCTTCEEEE--------EEECSHH-------HHHHHHHH
T ss_pred             hHHHHHHHHHhCCCCEEEEeCC---CCCCHHHHHHHHHHHHhcCCCceEe--------eeeCCHH-------HHHHHHHc
Confidence            4578899999999999999643   344332 34566777766 667643        1344544       45667788


Q ss_pred             CCCEEEEeeecC-----------CCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          95 GADGFVIGALTG-----------EQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        95 GadG~VfG~L~~-----------dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      |||++++|. .+           -|.-+...+.++.++++  +.|+.
T Consensus       170 GAD~I~vG~-gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVI  215 (366)
T 4fo4_A          170 GVSAVKVGI-GPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVI  215 (366)
T ss_dssp             TCSEEEECS-SCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEE
T ss_pred             CCCEEEEec-CCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEE
Confidence            999999972 21           12345566667666554  45543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=93.37  E-value=0.2  Score=43.93  Aligned_cols=72  Identities=21%  Similarity=0.330  Sum_probs=51.5

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCC----------CCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGL----------TPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGl----------TPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+.+.+..++++|||-|-+-..  .|+.          .|....+.++.+.   .++||..     -|| -.+.    
T Consensus       279 ~v~t~e~a~~l~~aGaD~I~Vg~g--~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa-----~GG-I~~~----  346 (496)
T 4fxs_A          279 NVATAEGARALIEAGVSAVKVGIG--PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIA-----DGG-IRFS----  346 (496)
T ss_dssp             EECSHHHHHHHHHHTCSEEEECSS--CCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEE-----ESC-CCSH----
T ss_pred             ccCcHHHHHHHHHhCCCEEEECCC--CCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEE-----eCC-CCCH----
Confidence            478899999999999999986421  2222          4667777777764   3788754     233 3332    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          .||..+.++|||++.+|
T Consensus       347 ----~di~kala~GAd~V~iG  363 (496)
T 4fxs_A          347 ----GDISKAIAAGASCVMVG  363 (496)
T ss_dssp             ----HHHHHHHHTTCSEEEES
T ss_pred             ----HHHHHHHHcCCCeEEec
Confidence                57777788999999999

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=93.35  E-value=0.25  Score=38.27  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCC----CHHHHHHHHhhCCCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTP----TLGLYRVIKRLVLVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP----S~g~i~~~~~~~~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      .+.+..+.++|||-|+|--  ..|...|    +...++++++.++.|  +++||.. .              .+.++.+.
T Consensus        22 ~~~i~~~~~~Gad~i~l~i--~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d-~--------------~~~i~~~~   84 (228)
T 1h1y_A           22 AAEADRMVRLGADWLHMDI--MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTN-P--------------SDYVEPLA   84 (228)
T ss_dssp             HHHHHHHHHTTCSEEEEEE--EBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSC-G--------------GGGHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEE--ecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecC-H--------------HHHHHHHH
Confidence            3667788899999999884  1243334    378999998877654  5588876 3              23467778


Q ss_pred             HcCCCEEEEeeecCC
Q psy7930          93 ESGADGFVIGALTGE  107 (146)
Q Consensus        93 ~~GadG~VfG~L~~d  107 (146)
                      +.|+||+.|-....+
T Consensus        85 ~agad~v~vH~~~~~   99 (228)
T 1h1y_A           85 KAGASGFTFHIEVSR   99 (228)
T ss_dssp             HHTCSEEEEEGGGCT
T ss_pred             HcCCCEEEECCCCcc
Confidence            889999988876655

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.27  E-value=0.36  Score=36.99  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=52.9

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC---CC--CCCHHHHHHHHhh--CCCcEEEEEccCCCCCcccCHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEG---GL--TPTLGLYRVIKRL--VLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G---Gl--TPS~g~i~~~~~~--~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      ..++=+-+.|.+++..|. .|||-|=+-.-...+   |.  +.....++.+++.  .++||+..     || -.  .   
T Consensus        88 ~~~ig~s~~t~~e~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviai-----GG-I~--~---  155 (210)
T 3ceu_A           88 AGHVSCSCHSVEEVKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMAL-----GG-IN--E---  155 (210)
T ss_dssp             CSEEEEEECSHHHHHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEE-----SS-CC--T---
T ss_pred             CCEEEEecCCHHHHHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEE-----CC-CC--H---
Confidence            345667788999999998 999998763222111   12  3356788888876  68998764     33 11  1   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          +++..+.+.|++||.+|
T Consensus       156 ----~nv~~~~~~Ga~gVav~  172 (210)
T 3ceu_A          156 ----DNLLEIKDFGFGGAVVL  172 (210)
T ss_dssp             ----TTHHHHHHTTCSEEEES
T ss_pred             ----HHHHHHHHhCCCEEEEh
Confidence                26777888999999886

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=93.24  E-value=0.28  Score=43.30  Aligned_cols=70  Identities=21%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCC-----CCCHHHHHHHHhhC-------CCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGL-----TPTLGLYRVIKRLV-------LVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~i~~~~~~~-------~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      +.+.++|..|++.|||-|-+-.   .||+     .|+...+.++++.+       ++||.+.     || .. +.     
T Consensus       351 v~~~e~A~~a~~aGad~I~vs~---hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~-----GG-I~-~g-----  415 (511)
T 1kbi_A          351 VQRTEDVIKAAEIGVSGVVLSN---HGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD-----GG-VR-RG-----  415 (511)
T ss_dssp             ECSHHHHHHHHHTTCSEEEECC---TTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE-----SS-CC-SH-----
T ss_pred             CCCHHHHHHHHHcCCCEEEEcC---CCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEE-----CC-CC-CH-----
Confidence            4579999999999999999943   2553     45677777777765       6787552     33 22 22     


Q ss_pred             HHHHHHHHHHcCCCEEEEe
Q psy7930          84 MALDCHQFVESGADGFVIG  102 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG  102 (146)
                        .|+..+..+|||+|.+|
T Consensus       416 --~Dv~kaLalGAdaV~iG  432 (511)
T 1kbi_A          416 --TDVLKALCLGAKGVGLG  432 (511)
T ss_dssp             --HHHHHHHHHTCSEEEEC
T ss_pred             --HHHHHHHHcCCCEEEEC
Confidence              56777778999999998

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=93.22  E-value=0.28  Score=41.36  Aligned_cols=72  Identities=22%  Similarity=0.311  Sum_probs=49.1

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCC---------CC-CCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEG---------GL-TPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~G---------Gl-TPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      .+.+.+.+..|++.|||-|-+ + ...|         |. .|....+..+.+   ..++||..     -|| . .+.   
T Consensus       201 ~v~~~~~a~~a~~~Gad~I~v-g-~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia-----~GG-I-~~~---  268 (404)
T 1eep_A          201 NIVTKEAALDLISVGADCLKV-G-IGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIA-----DGG-I-RFS---  268 (404)
T ss_dssp             EECSHHHHHHHHTTTCSEEEE-C-SSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEE-----ESC-C-CSH---
T ss_pred             CCCcHHHHHHHHhcCCCEEEE-C-CCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEE-----ECC-C-CCH---
Confidence            467899999999999999998 3 2211         11 355566666665   45778754     233 1 122   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          .|+..+..+|||+|.+|
T Consensus       269 ----~d~~~ala~GAd~V~iG  285 (404)
T 1eep_A          269 ----GDVVKAIAAGADSVMIG  285 (404)
T ss_dssp             ----HHHHHHHHHTCSEEEEC
T ss_pred             ----HHHHHHHHcCCCHHhhC
Confidence                57777888999999996

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=93.19  E-value=1.2  Score=34.47  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEc--cCC---CCCcccCHH-----HHHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR--VRA---GFDFVFSQA-----EKEIMALDCHQ   90 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIR--P~R---~gdF~Ys~~-----E~~~M~~dI~~   90 (146)
                      .+..+.+.|.+-|||...-.   ......-++...+..++++..+--  | .   ..+|.-.+.     -++.+++-|+.
T Consensus        46 ~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~p-~~~~~~~l~~~d~~~r~~~~~~~~~~i~~  121 (290)
T 2zvr_A           46 GMELAKRVGYQAVEIAVRDP---SIVDWNEVKILSEELNLPICAIGTGQA-YLADGLSLTHPNDEIRKKAIERVVKHTEV  121 (290)
T ss_dssp             HHHHHHHHTCSEEEEECSCG---GGSCHHHHHHHHHHHTCCEEEEECTHH-HHTTCCCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEcCCCc---chhhHHHHHHHHHHcCCeEEEEeccCc-cccCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            35667889999999986411   113466677777777888866544  4 3   334442222     26889999999


Q ss_pred             HHHcCCCEEEEeeecC-CCCcC--------HHHHHHHHHHhCCCCeEEe
Q psy7930          91 FVESGADGFVIGALTG-EQEID--------IEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~-dg~iD--------~~~~~~Li~~a~~~~vtFH  130 (146)
                      ++++|++-+| +.... ....+        .+.++++.+.|+.+.+.+|
T Consensus       122 A~~lG~~~v~-~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lE  169 (290)
T 2zvr_A          122 AGMFGALVII-GLVRGRREGRSYEETEELFIESMKRLLELTEHAKFVIE  169 (290)
T ss_dssp             HHHHTCEEEE-SGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHcCCCEEE-ecCCCCCCCcCHHHHHHHHHHHHHHHHHHhccCEEEEE
Confidence            9999999988 44211 11122        3456677777766666665

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=93.16  E-value=0.43  Score=37.41  Aligned_cols=68  Identities=22%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCC----CCCHHHHHHHHhhCCCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGL----TPTLGLYRVIKRLVLVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGl----TPS~g~i~~~~~~~~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.+..+.++|||-++|=-  .-|..    |-...+++++++.+++|  ++.||-- .              .+-++.+.+
T Consensus        21 ~~i~~~~~~Gad~ihldi--~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p--------------~~~i~~~~~   83 (230)
T 1tqj_A           21 EEIKAVDEAGADWIHVDV--MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-P--------------EKYVEDFAK   83 (230)
T ss_dssp             HHHHHHHHTTCSEEEEEE--EBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-G--------------GGTHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEE--EecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-H--------------HHHHHHHHH
Confidence            556677889999998864  12333    33457899998877666  4588854 2              235678889


Q ss_pred             cCCCEEEEeee
Q psy7930          94 SGADGFVIGAL  104 (146)
Q Consensus        94 ~GadG~VfG~L  104 (146)
                      +||||+.|+..
T Consensus        84 aGadgv~vh~e   94 (230)
T 1tqj_A           84 AGADIISVHVE   94 (230)
T ss_dssp             HTCSEEEEECS
T ss_pred             cCCCEEEECcc
Confidence            99999999976

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=93.15  E-value=0.54  Score=40.49  Aligned_cols=92  Identities=25%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +.+.+..+.+.|+|.|+|-+.   .|..+. ...++.+++..++||.+   .     =+-|.       ++++.+.++|+
T Consensus       145 ~~e~~~~lveaGvdvIvldta---~G~~~~~~e~I~~ik~~~~i~Vi~---g-----~V~t~-------e~A~~a~~aGA  206 (400)
T 3ffs_A          145 EIERAKLLVEAGVDVIVLDSA---HGHSLNIIRTLKEIKSKMNIDVIV---G-----NVVTE-------EATKELIENGA  206 (400)
T ss_dssp             -CHHHHHHHHHTCSEEEECCS---CCSBHHHHHHHHHHHTTCCCEEEE---E-----EECSH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCEEEEeCC---CCCcccHHHHHHHHHhcCCCeEEE---e-----ecCCH-------HHHHHHHHcCC
Confidence            367889999999999998543   343222 57788888877888765   1     12233       34566778999


Q ss_pred             CEEEEee------ecC----CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          97 DGFVIGA------LTG----EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        97 dG~VfG~------L~~----dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      |+|++|.      -+.    -|.-+...+.++.++++  +.|+
T Consensus       207 D~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPV  249 (400)
T 3ffs_A          207 DGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPI  249 (400)
T ss_dssp             SEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCE
T ss_pred             CEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCE
Confidence            9999973      111    12335667777777764  3444

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.03  E-value=1.2  Score=36.23  Aligned_cols=111  Identities=14%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCC------CCCCC--CHHHHHHHHh---hCCCcEEEEEccCCCC--C-cccCHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSE------GGLTP--TLGLYRVIKR---LVLVPVFVMIRVRAGF--D-FVFSQAE   80 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTP--S~g~i~~~~~---~~~ipv~vMIRP~R~g--d-F~Ys~~E   80 (146)
                      .+.+.+++..|.++|+++|-+....+.      =+.|+  +...++.+.+   ..++.|.+=|-- -.|  + -.++.++
T Consensus        82 l~~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~-~~~~e~~~~~~~~~  160 (302)
T 2ftp_A           82 LAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISC-VLGCPYDGDVDPRQ  160 (302)
T ss_dssp             ECCSHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC-TTCBTTTBCCCHHH
T ss_pred             EeCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEE-EeeCCcCCCCCHHH
Confidence            346899999999999999998632110      01111  1122222222   235665443322 111  1 1344554


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEee
Q psy7930          81 KEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFHR  131 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFHR  131 (146)
                      +.   +=++.+.++|+|.|.+.  +-.|........++++..+    +.++.||=
T Consensus       161 ~~---~~~~~~~~~G~d~i~l~--DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~  210 (302)
T 2ftp_A          161 VA---WVARELQQMGCYEVSLG--DTIGVGTAGATRRLIEAVASEVPRERLAGHF  210 (302)
T ss_dssp             HH---HHHHHHHHTTCSEEEEE--ESSSCCCHHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             HH---HHHHHHHHcCCCEEEEe--CCCCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            44   44566778899999988  7778888888888887765    36788883

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=93.00  E-value=0.18  Score=40.57  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=50.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .+.+-+.++.++|||=|||-.   ..|.|.  ...+++++++ .++|+..|.-- - ..|                  +.
T Consensus        21 ~t~~~~~~l~~~GaD~IelG~---S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~-~-n~i------------------~~   76 (234)
T 2f6u_A           21 NTDEIIKAVADSGTDAVMISG---TQNVTYEKARTLIEKVSQ-YGLPIVVEPSD-P-SNV------------------VY   76 (234)
T ss_dssp             CCHHHHHHHHTTTCSEEEECC---CTTCCHHHHHHHHHHHTT-SCCCEEECCSS-C-CCC------------------CC
T ss_pred             ccHHHHHHHHHcCCCEEEECC---CCCCCHHHHHHHHHHhcC-CCCCEEEecCC-c-chh------------------hc
Confidence            346678888999999999986   378887  5778888887 78999776422 0 223                  77


Q ss_pred             CCCEEEEeeecCCC
Q psy7930          95 GADGFVIGALTGEQ  108 (146)
Q Consensus        95 GadG~VfG~L~~dg  108 (146)
                      |+||+.|=-|-.+.
T Consensus        77 gvDg~iipdLp~ee   90 (234)
T 2f6u_A           77 DVDYLFVPTVLNSA   90 (234)
T ss_dssp             CSSEEEEEEETTBS
T ss_pred             CCCEEEEcccCCCC
Confidence            99999988776544

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=92.95  E-value=0.43  Score=39.51  Aligned_cols=65  Identities=23%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      .+..|.+.|||-|-.-       .||  ..++++++...+||.+     .||.=. +++|+-.   .++.+.++||+|++
T Consensus       194 aariA~elGAD~VKt~-------~t~--e~~~~vv~~~~vPVv~-----~GG~~~-~~~~~l~---~v~~ai~aGA~Gv~  255 (295)
T 3glc_A          194 ATRIAAEMGAQIIKTY-------YVE--KGFERIVAGCPVPIVI-----AGGKKL-PEREALE---MCWQAIDQGASGVD  255 (295)
T ss_dssp             HHHHHHHTTCSEEEEE-------CCT--TTHHHHHHTCSSCEEE-----ECCSCC-CHHHHHH---HHHHHHHTTCSEEE
T ss_pred             HHHHHHHhCCCEEEeC-------CCH--HHHHHHHHhCCCcEEE-----EECCCC-CHHHHHH---HHHHHHHhCCeEEE
Confidence            6788999999998775       222  3478888888899753     356433 5555544   45555578999999


Q ss_pred             Eee
Q psy7930         101 IGA  103 (146)
Q Consensus       101 fG~  103 (146)
                      +|=
T Consensus       256 vGR  258 (295)
T 3glc_A          256 MGR  258 (295)
T ss_dssp             ESH
T ss_pred             eHH
Confidence            993

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=92.89  E-value=0.5  Score=38.31  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCC------CCCC--CHHH----HHHHHhhCCCcEEEEEccCC---CCCcccCH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEG------GLTP--TLGL----YRVIKRLVLVPVFVMIRVRA---GFDFVFSQ   78 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G------GlTP--S~g~----i~~~~~~~~ipv~vMIRP~R---~gdF~Ys~   78 (146)
                      +.+.+..++..|.++|+++|-+....+.-      +.|+  +...    ++.+++ .+++|.+=|-- -   .-...++.
T Consensus        78 ~l~~~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~-~G~~v~~~l~~-~~~~~~~~~~~~  155 (298)
T 2cw6_A           78 VLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS-ANISVRGYVSC-ALGCPYEGKISP  155 (298)
T ss_dssp             EECCSHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH-TTCEEEEEEET-TTCBTTTBSCCH
T ss_pred             EEcCCHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEE-EeeCCcCCCCCH
Confidence            34568999999999999999987543211      1221  1122    333322 36666543321 1   11123556


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                      +++..+   ++.+.++|++.|.+.  +.-|........++++..+    +.++-||
T Consensus       156 ~~~~~~---~~~~~~~Ga~~i~l~--DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H  206 (298)
T 2cw6_A          156 AKVAEV---TKKFYSMGCYEISLG--DTIGVGTPGIMKDMLSAVMQEVPLAALAVH  206 (298)
T ss_dssp             HHHHHH---HHHHHHTTCSEEEEE--ETTSCCCHHHHHHHHHHHHHHSCGGGEEEE
T ss_pred             HHHHHH---HHHHHHcCCCEEEec--CCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            555544   567788999988877  6678888888888877764    4667777

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=92.74  E-value=0.44  Score=38.61  Aligned_cols=95  Identities=24%  Similarity=0.298  Sum_probs=61.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCC-------------------------CCCC-------CCCCHHHHHHHHhhCCCc
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAAL-------------------------SEGG-------LTPTLGLYRVIKRLVLVP   61 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l-------------------------~~GG-------lTPS~g~i~~~~~~~~ip   61 (146)
                      +.+.|++++..+.+.|||-|-+-...                         ...+       ..++..+++++++..++|
T Consensus       130 ~~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iP  209 (305)
T 2nv1_A          130 CGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLP  209 (305)
T ss_dssp             EEESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCS
T ss_pred             EEeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCC
Confidence            56778999999999999988774311                         0011       235678888888888889


Q ss_pred             EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee-ecCCCCcCH-HHHHHHHHHh
Q psy7930          62 VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA-LTGEQEIDI-EFIRQLKTII  122 (146)
Q Consensus        62 v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~-~~~~~Li~~a  122 (146)
                      |.+.  . -||  ..|.+       |+..+.++|||||++|= +-..+  |. ..++++++..
T Consensus       210 vi~~--a-~GG--I~~~~-------d~~~~~~~GadgV~vGsai~~~~--~p~~~~~~l~~~~  258 (305)
T 2nv1_A          210 VVNF--A-AGG--VATPA-------DAALMMQLGADGVFVGSGIFKSD--NPAKFAKAIVEAT  258 (305)
T ss_dssp             SCEE--B-CSC--CCSHH-------HHHHHHHTTCSCEEECGGGGGSS--CHHHHHHHHHHHH
T ss_pred             EEEE--e-ccC--CCCHH-------HHHHHHHcCCCEEEEcHHHHcCC--CHHHHHHHHHHHH
Confidence            7421  2 345  33443       46667779999999992 22222  32 4666666544

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=92.66  E-value=0.89  Score=39.06  Aligned_cols=67  Identities=21%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+.+..+.++|+|.|++..+   .|..+ ....++.+++.. ++||.+   +     ...+.+|.       +.+.++|+
T Consensus       239 ~~~a~~l~~aGvd~v~i~~~---~G~~~~~~e~i~~i~~~~p~~pvi~---g-----~~~t~e~a-------~~l~~~G~  300 (494)
T 1vrd_A          239 MERVEKLVKAGVDVIVIDTA---HGHSRRVIETLEMIKADYPDLPVVA---G-----NVATPEGT-------EALIKAGA  300 (494)
T ss_dssp             HHHHHHHHHTTCSEEEECCS---CCSSHHHHHHHHHHHHHCTTSCEEE---E-----EECSHHHH-------HHHHHTTC
T ss_pred             HHHHHHHHHhCCCEEEEEec---CCchHHHHHHHHHHHHHCCCceEEe---C-----CcCCHHHH-------HHHHHcCC
Confidence            67888899999999999654   24322 667888888887 688854   3     45565554       56678999


Q ss_pred             CEEEEee
Q psy7930          97 DGFVIGA  103 (146)
Q Consensus        97 dG~VfG~  103 (146)
                      |+|++|.
T Consensus       301 d~I~v~~  307 (494)
T 1vrd_A          301 DAVKVGV  307 (494)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcC
Confidence            9999964

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=92.55  E-value=0.69  Score=36.27  Aligned_cols=90  Identities=23%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             CHHHH-HHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASA-LAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a-~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +++.+ ..|++.|||-|-+.-       +.....++++++.+++||.+     -||--.-+.+++..   .+..+.++|+
T Consensus       167 ~~~~~a~~a~~~Gad~i~~~~-------~~~~~~l~~i~~~~~ipvva-----~GGi~~~~~~~~~~---~~~~~~~~Ga  231 (273)
T 2qjg_A          167 LVAHAARLGAELGADIVKTSY-------TGDIDSFRDVVKGCPAPVVV-----AGGPKTNTDEEFLQ---MIKDAMEAGA  231 (273)
T ss_dssp             HHHHHHHHHHHTTCSEEEECC-------CSSHHHHHHHHHHCSSCEEE-----ECCSCCSSHHHHHH---HHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCEEEECC-------CCCHHHHHHHHHhCCCCEEE-----EeCCCCCCHHHHHH---HHHHHHHcCC
Confidence            34555 889999999887652       24688999999888999865     35543324555444   3555668999


Q ss_pred             CEEEEe-eecCCCCcCHHHHHHHHHHhC
Q psy7930          97 DGFVIG-ALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        97 dG~VfG-~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +|+.+| .+.....+ .+.+++|.+..+
T Consensus       232 ~gv~vg~~i~~~~~~-~~~~~~l~~~~~  258 (273)
T 2qjg_A          232 AGVAVGRNIFQHDDV-VGITRAVCKIVH  258 (273)
T ss_dssp             SEEECCHHHHTSSSH-HHHHHHHHHHHH
T ss_pred             cEEEeeHHhhCCCCH-HHHHHHHHHHHh
Confidence            999998 34333322 355666665543

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=92.53  E-value=0.05  Score=42.04  Aligned_cols=69  Identities=17%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhC--CCcEEEE--EccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLV--LVPVFVM--IRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vM--IRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      .|.+++..+.+.|+|-+-+....  ..+|...+...++.+++..  ++|+.|-  |+|                 +.+..
T Consensus       120 ~T~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~~~~~~~pi~v~GGI~~-----------------~~~~~  182 (218)
T 3jr2_A          120 WTMQDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSALGIELSITGGIVP-----------------EDIYL  182 (218)
T ss_dssp             CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHHTTCEEEEESSCCG-----------------GGGGG
T ss_pred             CCHHHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHHHhCCCCCEEEECCCCH-----------------HHHHH
Confidence            46788999999999987663221  2246667777788777754  6676543  233                 12345


Q ss_pred             HHHcCCCEEEEe
Q psy7930          91 FVESGADGFVIG  102 (146)
Q Consensus        91 ~~~~GadG~VfG  102 (146)
                      +.++|||++|+|
T Consensus       183 ~~~aGAd~vvvG  194 (218)
T 3jr2_A          183 FEGIKTKTFIAG  194 (218)
T ss_dssp             GTTSCEEEEEES
T ss_pred             HHHcCCCEEEEc
Confidence            889999999999

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=92.40  E-value=0.11  Score=40.62  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++..|.+.|||-|-+=-.-..||    ...++.+++.+ ++|+.    | -||=   |.       +.+..+.++
T Consensus       116 ~~t~~e~~~A~~~Gad~v~~Fpa~~~gG----~~~lk~i~~~~~~ipvv----a-iGGI---~~-------~n~~~~l~a  176 (214)
T 1wbh_A          116 ISTVSELMLGMDYGLKEFKFFPAEANGG----VKALQAIAGPFSQVRFC----P-TGGI---SP-------ANYRDYLAL  176 (214)
T ss_dssp             ESSHHHHHHHHHTTCCEEEETTTTTTTH----HHHHHHHHTTCTTCEEE----E-BSSC---CT-------TTHHHHHTS
T ss_pred             cCCHHHHHHHHHCCCCEEEEecCccccC----HHHHHHHhhhCCCCeEE----E-ECCC---CH-------HHHHHHHhc
Confidence            7889999999999999999932111222    67888888877 67774    4 4652   11       366778888


Q ss_pred             -CCCEEEEeeecCCCCc---CHHHHHHHH
Q psy7930          95 -GADGFVIGALTGEQEI---DIEFIRQLK  119 (146)
Q Consensus        95 -GadG~VfG~L~~dg~i---D~~~~~~Li  119 (146)
                       |++|+..+.|.+...+   |.+.++++.
T Consensus       177 gg~~~v~gS~i~~~~~~~~~~~~~i~~~a  205 (214)
T 1wbh_A          177 KSVLCIGGSWLVPADALEAGDYDRITKLA  205 (214)
T ss_dssp             TTBSCEEEGGGSCHHHHHHTCHHHHHHHH
T ss_pred             CCCeEEEeccccChhhhhcCCHHHHHHHH
Confidence             9999998888865322   344444443

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=92.32  E-value=0.95  Score=37.51  Aligned_cols=91  Identities=10%  Similarity=0.015  Sum_probs=57.0

Q ss_pred             HHHHcCCCEEEecCCCCCCCCC-------C-CHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          24 AAVRGGADRLELCAALSEGGLT-------P-TLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        24 ~A~~~GAdRIELc~~l~~GGlT-------P-S~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      .-.+.|++.||+--.-..+|.+       + ....++.+++. .++|+.+|..| .-+.           .++++.+.+.
T Consensus        38 ~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p-~~~~-----------~~~i~~a~~a  105 (345)
T 1nvm_A           38 ALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLP-GIGS-----------VHDLKNAYQA  105 (345)
T ss_dssp             HHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECB-TTBC-----------HHHHHHHHHH
T ss_pred             HHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecC-Cccc-----------HHHHHHHHhC
Confidence            3456799999994100112222       2 35566676665 37899999777 3221           3689999999


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      |+|+|-+-. . -.  |.+.+++.++.|+  ++.+.|.
T Consensus       106 Gvd~v~I~~-~-~s--~~~~~~~~i~~ak~~G~~v~~~  139 (345)
T 1nvm_A          106 GARVVRVAT-H-CT--EADVSKQHIEYARNLGMDTVGF  139 (345)
T ss_dssp             TCCEEEEEE-E-TT--CGGGGHHHHHHHHHHTCEEEEE
T ss_pred             CcCEEEEEE-e-cc--HHHHHHHHHHHHHHCCCEEEEE
Confidence            999987742 2 11  2245677777776  6776666

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=92.25  E-value=0.38  Score=41.20  Aligned_cols=87  Identities=16%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +.+.+..+.+.|+|.|.+-.+   +|-.+ ....++.+++.. ++|+.    .   | .+-+.       ++++.+.++|
T Consensus       234 ~~~~a~~l~~~G~d~ivi~~a---~g~~~~~~~~i~~l~~~~p~~pvi----~---G-~v~t~-------~~a~~~~~~G  295 (491)
T 1zfj_A          234 TFERAEALFEAGADAIVIDTA---HGHSAGVLRKIAEIRAHFPNRTLI----A---G-NIATA-------EGARALYDAG  295 (491)
T ss_dssp             HHHHHHHHHHHTCSEEEECCS---CTTCHHHHHHHHHHHHHCSSSCEE----E---E-EECSH-------HHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCeEEEeee---cCcchhHHHHHHHHHHHCCCCcEe----C---C-CccCH-------HHHHHHHHcC
Confidence            368899999999999998763   34332 355677777777 78874    3   2 33443       6777888999


Q ss_pred             CCEEEEee----------ecCCCCcCHHHHHHHHHHh
Q psy7930          96 ADGFVIGA----------LTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        96 adG~VfG~----------L~~dg~iD~~~~~~Li~~a  122 (146)
                      +|++.+|.          ++.-+.-..+.++++..++
T Consensus       296 ad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~  332 (491)
T 1zfj_A          296 VDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVA  332 (491)
T ss_dssp             CSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHH
T ss_pred             CCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHH
Confidence            99999983          1122344566666666654

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=92.16  E-value=0.27  Score=39.43  Aligned_cols=73  Identities=18%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      |++.|.+++..|.+.|++-|=++.. ..-.+.|.....+.+.+.+     ++|+..   =  ||  ..|.       +|+
T Consensus       159 vev~~~~E~~~a~~~gad~IGvn~~-~l~~~~~dl~~~~~L~~~i~~~~~~~~vIA---e--gG--I~s~-------~dv  223 (254)
T 1vc4_A          159 VEVHTERELEIALEAGAEVLGINNR-DLATLHINLETAPRLGRLARKRGFGGVLVA---E--SG--YSRK-------EEL  223 (254)
T ss_dssp             EEECSHHHHHHHHHHTCSEEEEESB-CTTTCCBCTTHHHHHHHHHHHTTCCSEEEE---E--SC--CCSH-------HHH
T ss_pred             EEECCHHHHHHHHHcCCCEEEEccc-cCcCCCCCHHHHHHHHHhCccccCCCeEEE---E--cC--CCCH-------HHH
Confidence            7889999999999999998877652 2345677778777777655     555543   2  45  2233       567


Q ss_pred             HHHHHcCCCEEEEe
Q psy7930          89 HQFVESGADGFVIG  102 (146)
Q Consensus        89 ~~~~~~GadG~VfG  102 (146)
                      ..+++ |++||++|
T Consensus       224 ~~l~~-Ga~gvlVG  236 (254)
T 1vc4_A          224 KALEG-LFDAVLIG  236 (254)
T ss_dssp             HTTTT-TCSEEEEC
T ss_pred             HHHHc-CCCEEEEe
Confidence            78889 99999998

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=92.13  E-value=0.36  Score=38.88  Aligned_cols=68  Identities=19%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             cCHHHHHHHHHcCC----CEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGA----DRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        17 ~s~~~a~~A~~~GA----dRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      ++++.+....+.|.    .-+=|-+    -|.++...+++++++.+ ++|+.|      ||+-. |.       ++++.+
T Consensus       139 ~~~~~~~~~a~~g~~~~~~~VYl~s----~G~~~~~~~i~~i~~~~~~~Pv~v------GgGI~-t~-------e~a~~~  200 (240)
T 1viz_A          139 LNMDDIVAYARVSELLQLPIFYLEY----SGVLGDIEAVKKTKAVLETSTLFY------GGGIK-DA-------ETAKQY  200 (240)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEC----TTSCCCHHHHHHHHHTCSSSEEEE------ESSCC-SH-------HHHHHH
T ss_pred             CCHHHHHHHHHhCcccCCCEEEEeC----CCccChHHHHHHHHHhcCCCCEEE------EeccC-CH-------HHHHHH
Confidence            56788888888884    5664444    37899999999999999 999765      33222 22       456667


Q ss_pred             HHcCCCEEEEee
Q psy7930          92 VESGADGFVIGA  103 (146)
Q Consensus        92 ~~~GadG~VfG~  103 (146)
                      .+ ||||+|+|=
T Consensus       201 ~~-gAd~VIVGS  211 (240)
T 1viz_A          201 AE-HADVIVVGN  211 (240)
T ss_dssp             HT-TCSEEEECT
T ss_pred             Hh-CCCEEEECh
Confidence            77 999999994

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=92.09  E-value=0.66  Score=37.32  Aligned_cols=112  Identities=13%  Similarity=0.059  Sum_probs=70.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCC------CCCC--CHHHHHHHHh---hCCCcEEEEEccCCCC---CcccCHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEG------GLTP--TLGLYRVIKR---LVLVPVFVMIRVRAGF---DFVFSQA   79 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G------GlTP--S~g~i~~~~~---~~~ipv~vMIRP~R~g---dF~Ys~~   79 (146)
                      +-+.|.+++..|.++|+++|-+....+..      +.|+  +...++.+.+   ..+++|..-|.- -.|   ...++.+
T Consensus        77 ~l~~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~-~~~~e~~~~~~~~  155 (295)
T 1ydn_A           77 VLVPNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSC-VVECPYDGPVTPQ  155 (295)
T ss_dssp             EECSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC-SSEETTTEECCHH
T ss_pred             EEeCCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEE-EecCCcCCCCCHH
Confidence            33478999999999999999886422100      2222  2222222222   247777655543 221   2455666


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---C-CCeEEee
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG---D-RPITFHR  131 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~-~~vtFHR  131 (146)
                      ++..+.   +.+.++|+|.+.+.  +.-|........++++..+   + .++.||=
T Consensus       156 ~~~~~~---~~~~~~G~d~i~l~--Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~  206 (295)
T 1ydn_A          156 AVASVT---EQLFSLGCHEVSLG--DTIGRGTPDTVAAMLDAVLAIAPAHSLAGHY  206 (295)
T ss_dssp             HHHHHH---HHHHHHTCSEEEEE--ETTSCCCHHHHHHHHHHHHTTSCGGGEEEEE
T ss_pred             HHHHHH---HHHHhcCCCEEEec--CCCCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            665554   55668899999988  6677777777777777654   3 6788884

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=92.07  E-value=0.77  Score=38.67  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=47.1

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      +.+.+..+.++|||.|+|...   .|.+. -...++.+++..++||.+  -      .+-|.+       +++.+.++|+
T Consensus       106 ~~e~a~~l~eaGad~I~ld~a---~G~~~~~~~~i~~i~~~~~~~Viv--g------~v~t~e-------~A~~l~~aGa  167 (361)
T 3khj_A          106 EIERAKLLVEAGVDVIVLDSA---HGHSLNIIRTLKEIKSKMNIDVIV--G------NVVTEE-------ATKELIENGA  167 (361)
T ss_dssp             CHHHHHHHHHTTCSEEEECCS---CCSBHHHHHHHHHHHHHCCCEEEE--E------EECSHH-------HHHHHHHTTC
T ss_pred             HHHHHHHHHHcCcCeEEEeCC---CCCcHHHHHHHHHHHHhcCCcEEE--c------cCCCHH-------HHHHHHHcCc
Confidence            378899999999999999754   23221 235677777777888765  1      123333       4677888999


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |+|++|
T Consensus       168 D~I~VG  173 (361)
T 3khj_A          168 DGIKVG  173 (361)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            999997

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=92.02  E-value=0.5  Score=37.30  Aligned_cols=85  Identities=11%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++..|.+.|||-|-+=-.-..||    ...++.+++.+ ++|+.    | -||=   |.       +++..+.++
T Consensus       117 v~t~~e~~~A~~~Gad~vk~Fpa~~~gG----~~~lk~l~~~~~~ipvv----a-iGGI---~~-------~N~~~~l~a  177 (224)
T 1vhc_A          117 VNNPMAIEIALEMGISAVKFFPAEASGG----VKMIKALLGPYAQLQIM----P-TGGI---GL-------HNIRDYLAI  177 (224)
T ss_dssp             ECSHHHHHHHHHTTCCEEEETTTTTTTH----HHHHHHHHTTTTTCEEE----E-BSSC---CT-------TTHHHHHTS
T ss_pred             cCCHHHHHHHHHCCCCEEEEeeCccccC----HHHHHHHHhhCCCCeEE----E-ECCc---CH-------HHHHHHHhc
Confidence            7889999999999999999932111223    67888888877 68863    4 5662   11       356778888


Q ss_pred             -CCCEEEEeeecCCCC---cCHHHHHHHH
Q psy7930          95 -GADGFVIGALTGEQE---IDIEFIRQLK  119 (146)
Q Consensus        95 -GadG~VfG~L~~dg~---iD~~~~~~Li  119 (146)
                       |++|+..+.|.+...   =|.+.++++.
T Consensus       178 gga~~v~gS~i~~~~~i~~~~~~~i~~~a  206 (224)
T 1vhc_A          178 PNIVACGGSWFVEKKLIQSNNWDEIGRLV  206 (224)
T ss_dssp             TTBCCEEECGGGCHHHHHTTCHHHHHHHH
T ss_pred             CCCEEEEEchhcCcchhccCCHHHHHHHH
Confidence             999999888886432   2444444443

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=92.00  E-value=0.3  Score=38.90  Aligned_cols=71  Identities=28%  Similarity=0.403  Sum_probs=47.8

Q ss_pred             CHHH-HHHHHHcCCCEEEecCC-------C---------CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930          18 SVAS-ALAAVRGGADRLELCAA-------L---------SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDF   74 (146)
Q Consensus        18 s~~~-a~~A~~~GAdRIELc~~-------l---------~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF   74 (146)
                      ++.+ +..+++.|+|-|-+-..       .         ..||++..      ..+++++++.+++||.+     -||  
T Consensus       177 ~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia-----~GG--  249 (311)
T 1ep3_A          177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIG-----MGG--  249 (311)
T ss_dssp             CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEE-----CSS--
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEE-----ECC--
Confidence            4444 88899999999998431       1         02444432      47888888888999754     244  


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      ..|.+       |+..+.++|||+|.+|
T Consensus       250 I~~~~-------d~~~~l~~GAd~V~vg  270 (311)
T 1ep3_A          250 VANAQ-------DVLEMYMAGASAVAVG  270 (311)
T ss_dssp             CCSHH-------HHHHHHHHTCSEEEEC
T ss_pred             cCCHH-------HHHHHHHcCCCEEEEC
Confidence            22333       5556667899999998

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=91.94  E-value=1.1  Score=36.71  Aligned_cols=112  Identities=10%  Similarity=0.033  Sum_probs=69.5

Q ss_pred             eEEEecCHHHHHHHHHcCCCEEEecCCCCC------CCCCCC------HHHHHHHHhhCCCcEEEEEccCCCC---Cccc
Q psy7930          12 LEVCVDSVASALAAVRGGADRLELCAALSE------GGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGF---DFVF   76 (146)
Q Consensus        12 lEvcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~g---dF~Y   76 (146)
                      +-+.+.+..++..|.++|+++|-+....+.      =+.|+.      ...++.+++ .++.|.+-|-- -.|   +..+
T Consensus        77 ~~~l~~~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~-~G~~v~~~i~~-~~~~~~~~~~  154 (307)
T 1ydo_A           77 YAALVPNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQK-ANLTTRAYLST-VFGCPYEKDV  154 (307)
T ss_dssp             EEEECCSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHH-TTCEEEEEEEC-TTCBTTTBCC
T ss_pred             EEEEeCCHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCEEEEEEEE-EecCCcCCCC
Confidence            334457899999999999999998753221      122221      122333333 35555433321 111   1245


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                      +.+.+..   =++.+.++|+|.|.+.  +--|......+.+|++..+    +.++.||
T Consensus       155 ~~~~~~~---~~~~~~~~Ga~~i~l~--DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H  207 (307)
T 1ydo_A          155 PIEQVIR---LSEALFEFGISELSLG--DTIGAANPAQVETVLEALLARFPANQIALH  207 (307)
T ss_dssp             CHHHHHH---HHHHHHHHTCSCEEEE--CSSCCCCHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred             CHHHHHH---HHHHHHhcCCCEEEEc--CCCCCcCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            5555544   4566778899988887  6778888889888888764    3678888

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=91.83  E-value=0.27  Score=41.18  Aligned_cols=74  Identities=22%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCC-----C-CCCCHHHHHHHHhh-------CC---CcEEEEEccCCCCCcccCH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEG-----G-LTPTLGLYRVIKRL-------VL---VPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~G-----G-lTPS~g~i~~~~~~-------~~---ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .+.|.+++..+.+.|||-|-+ ++-..+     | -.|....+.++++.       ++   +||.+     -|| .... 
T Consensus       218 gi~t~e~a~~~~~~Gad~i~v-g~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia-----~GG-I~~~-  289 (393)
T 2qr6_A          218 GVNDYTTALHMMRTGAVGIIV-GGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIA-----DGS-IENS-  289 (393)
T ss_dssp             CCCSHHHHHHHHTTTCSEEEE-SCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEE-----CSS-CCSH-
T ss_pred             CcCCHHHHHHHHHcCCCEEEE-CCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEE-----ECC-CCCH-
Confidence            467899999999999999999 431111     2 15667777766665       44   77643     244 3322 


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                             .|+..+..+|||+|.+|=
T Consensus       290 -------~dv~kalalGA~~V~iG~  307 (393)
T 2qr6_A          290 -------GDVVKAIACGADAVVLGS  307 (393)
T ss_dssp             -------HHHHHHHHHTCSEEEECG
T ss_pred             -------HHHHHHHHcCCCEEEECH
Confidence                   567788889999999993

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=91.75  E-value=2.2  Score=32.68  Aligned_cols=108  Identities=10%  Similarity=-0.018  Sum_probs=63.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCC-CCCHHHHH---HHHhhCCCcEEEEEccCCCCCcccC---HHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGL-TPTLGLYR---VIKRLVLVPVFVMIRVRAGFDFVFS---QAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGl-TPS~g~i~---~~~~~~~ipv~vMIRP~R~gdF~Ys---~~E~~~M~~dI~~~~   92 (146)
                      +.+..|.+.|.+-|||..... ..+ ..+...++   ...+..++++..+ -| ..+ +..+   +.-++.+++-|+.++
T Consensus        19 ~~l~~~~~~G~~~vEl~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~i~~A~   94 (286)
T 3dx5_A           19 DIVQFAYENGFEGIELWGTHA-QNLYMQEYETTERELNCLKDKTLEITMI-SD-YLD-ISLSADFEKTIEKCEQLAILAN   94 (286)
T ss_dssp             HHHHHHHHTTCCEEEEEHHHH-HHHHHHCHHHHHHHHHHTGGGTCCEEEE-EC-CCC-CSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccccc-ccccccCHHHHHHHHHHHHHcCCeEEEE-ec-CCC-CCCchhHHHHHHHHHHHHHHHH
Confidence            345678889999999953100 000 01223344   4444558887764 45 221 2121   345788999999999


Q ss_pred             HcCCCEEEEeeec-CCCCcC-------HHHHHHHHHHhC--CCCeEEee
Q psy7930          93 ESGADGFVIGALT-GEQEID-------IEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        93 ~~GadG~VfG~L~-~dg~iD-------~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      ++|++-+++..=. +.+...       .+.++++.+.|+  |+.+.+|-
T Consensus        95 ~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~  143 (286)
T 3dx5_A           95 WFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLET  143 (286)
T ss_dssp             HHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence            9999999874322 111122       355666766664  77777774

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=91.71  E-value=2.6  Score=34.23  Aligned_cols=118  Identities=12%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             eEEEecCHHHHHH----HHHcCCCEEEecCCCCCCCCCCC---HHHHHHHHhhC-CCcEEEEEccC-CCCCcccCHHHHH
Q psy7930          12 LEVCVDSVASALA----AVRGGADRLELCAALSEGGLTPT---LGLYRVIKRLV-LVPVFVMIRVR-AGFDFVFSQAEKE   82 (146)
Q Consensus        12 lEvcv~s~~~a~~----A~~~GAdRIELc~~l~~GGlTPS---~g~i~~~~~~~-~ipv~vMIRP~-R~gdF~Ys~~E~~   82 (146)
                      +=+...+.+++..    +...|||=|||.-++-.. ..+.   ...++.+++.. ++|+.+-+|++ -||-|..++++..
T Consensus        44 v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~-~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~  122 (276)
T 3o1n_A           44 VSLMGKTITDVKSEALAYREADFDILEWRVDHFAN-VTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYI  122 (276)
T ss_dssp             EEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT-TTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc-cCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHH
Confidence            3444456666554    445899999999876553 3331   23455566666 79999999973 3577777776554


Q ss_pred             HHHHHHHHHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHh--CCCCeEEee-cccCCCC
Q psy7930          83 IMALDCHQFVESG-ADGFVIGALTGEQEIDIEFIRQLKTII--GDRPITFHR-AFDVVRE  138 (146)
Q Consensus        83 ~M~~dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a--~~~~vtFHR-AFD~~~d  138 (146)
                      .+   ++.+.++| +|-+-+=     -..+.+..++|++.|  ++.++..+. =|+.+++
T Consensus       123 ~l---l~~~l~~g~~dyIDvE-----l~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~  174 (276)
T 3o1n_A          123 DL---NRAAVDSGLVDMIDLE-----LFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPA  174 (276)
T ss_dssp             HH---HHHHHHHTCCSEEEEE-----GGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred             HH---HHHHHhcCCCCEEEEE-----CcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcC
Confidence            44   34455678 7776553     345677899999865  466666533 4777764

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=91.65  E-value=0.082  Score=42.54  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=49.4

Q ss_pred             CHHHHHHHHHcCC-----CEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGA-----DRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        18 s~~~a~~A~~~GA-----dRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      +.+.+..-.+.|+     .-|=|-+    -|.++...+++.+++.+ ++|+.|      ||+-. |.       ++++.+
T Consensus       147 ~~e~~~~~a~~g~~~l~~~~Vyl~~----~G~~~~~~~i~~i~~~~~~~Pv~v------GgGI~-s~-------e~a~~~  208 (234)
T 2f6u_A          147 DKELAASYALVGEKLFNLPIIYIEY----SGTYGNPELVAEVKKVLDKARLFY------GGGID-SR-------EKAREM  208 (234)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEEC----TTSCCCHHHHHHHHHHCSSSEEEE------ESCCC-SH-------HHHHHH
T ss_pred             CHHHHHHHHHhhhhhcCCCEEEEeC----CCCcchHHHHHHHHHhCCCCCEEE------EecCC-CH-------HHHHHH
Confidence            6666888888888     5555554    36899999999999999 999865      33222 22       456667


Q ss_pred             HHcCCCEEEEee
Q psy7930          92 VESGADGFVIGA  103 (146)
Q Consensus        92 ~~~GadG~VfG~  103 (146)
                      .+ ||||+|+|=
T Consensus       209 ~~-gAd~VIVGS  219 (234)
T 2f6u_A          209 LR-YADTIIVGN  219 (234)
T ss_dssp             HH-HSSEEEECH
T ss_pred             Hh-CCCEEEECh
Confidence            77 999999993

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=91.64  E-value=0.15  Score=38.21  Aligned_cols=65  Identities=17%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+.+..+.++|++-|+|-..    ..+|.  ...++.+++.. ...+.+|+.                  ++++.++++|
T Consensus        29 ~~~~~~~~~~G~~~i~l~~~----~~~~~~~~~~~~~l~~~~~~~~v~v~v~------------------~~~~~a~~~g   86 (215)
T 1xi3_A           29 VESVREALEGGATAIQMRIK----NAPTREMYEIGKTLRQLTREYDALFFVD------------------DRVDVALAVD   86 (215)
T ss_dssp             HHHHHHHHHTTCSEEEECCC----SCCHHHHHHHHHHHHHHHHHTTCEEEEE------------------SCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEECCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEc------------------ChHHHHHHcC
Confidence            47788899999999999841    12222  33344443322 123444553                  2346788999


Q ss_pred             CCEEEEeeec
Q psy7930          96 ADGFVIGALT  105 (146)
Q Consensus        96 adG~VfG~L~  105 (146)
                      +||+++|..+
T Consensus        87 ad~v~l~~~~   96 (215)
T 1xi3_A           87 ADGVQLGPED   96 (215)
T ss_dssp             CSEEEECTTS
T ss_pred             CCEEEECCcc
Confidence            9999998543

>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A

Probab=91.58  E-value=2  Score=36.64  Aligned_cols=84  Identities=11%  Similarity=-0.083  Sum_probs=55.7

Q ss_pred             cCHHHHHHHHHc-CCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEc-cCCCCCccc----CHHHHHHHHHH
Q psy7930          17 DSVASALAAVRG-GADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIR-VRAGFDFVF----SQAEKEIMALD   87 (146)
Q Consensus        17 ~s~~~a~~A~~~-GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIR-P~R~gdF~Y----s~~E~~~M~~d   87 (146)
                      .+......+.+. |.+-||+.-.-...|...+...++++++   ..++.+.++=- | -..++..    -+..++.+++-
T Consensus        31 ~d~~~L~~i~q~~G~~gIe~~l~~~~~g~~w~~~~i~~lk~~l~~~GL~i~~i~s~~-~~~~i~~~~~~r~~~ie~~k~~  109 (386)
T 3bdk_A           31 KDPVTLEEIKAIPGMQGIVTAVYDVPVGQAWPLENILELKKMVEEAGLEITVIESIP-VHEDIKQGKPNRDALIENYKTS  109 (386)
T ss_dssp             TCSSCHHHHHTSTTCCEEEECCCSSCSSSCCCHHHHHHHHHHHHTTTCEEEEEECCC-CCHHHHTTCTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEeCCcccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc-cccccccCcHHHHHHHHHHHHH
Confidence            344567778899 9999999633233455556555555554   45788877621 2 1111111    26788999999


Q ss_pred             HHHHHHcCCCEEEE
Q psy7930          88 CHQFVESGADGFVI  101 (146)
Q Consensus        88 I~~~~~~GadG~Vf  101 (146)
                      |+.+.++|++-|++
T Consensus       110 i~~aa~lGi~~v~~  123 (386)
T 3bdk_A          110 IRNVGAAGIPVVCY  123 (386)
T ss_dssp             HHHHHTTTCCEEEE
T ss_pred             HHHHHHcCCCEEEE
Confidence            99999999997764

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.54  E-value=0.39  Score=39.99  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             ccceeEEEecCHHH----HHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH
Q psy7930           8 NKTTLEVCVDSVAS----ALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         8 ~~~~lEvcv~s~~~----a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      -++++|.|.-+.++    +..|.++|||-|--......||.|| ...+|+++.+..+-++  =|-+ -||  .-|.++..
T Consensus       176 lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v~~~g~~v--~VKA-AGG--Irt~edAl  250 (288)
T 3oa3_A          176 LKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCDSLQSET--RVKA-SGG--IRTIEDCV  250 (288)
T ss_dssp             EEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHHHSSSCC--EEEE-ESS--CCSHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHhCCCc--eEEE-eCC--CCCHHHHH
Confidence            46788999888888    7888899999999998888888887 6788888876443332  2334 455  22444444


Q ss_pred             HHHHHHHHHHHcCCCE
Q psy7930          83 IMALDCHQFVESGADG   98 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG   98 (146)
                      .       +.++||+-
T Consensus       251 ~-------mi~aGA~R  259 (288)
T 3oa3_A          251 K-------MVRAGAER  259 (288)
T ss_dssp             H-------HHHTTCSE
T ss_pred             H-------HHHcCCce
Confidence            4       44589983

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=91.54  E-value=0.76  Score=37.43  Aligned_cols=66  Identities=23%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             cCCCEEEecCCCCC-CCC----CC--CHHHHHHHHhhC---------CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          28 GGADRLELCAALSE-GGL----TP--TLGLYRVIKRLV---------LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        28 ~GAdRIELc~~l~~-GGl----TP--S~g~i~~~~~~~---------~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      .|+|-||++-+-.. -|.    .|  ...+++.+++..         ++||.|=|+| -     ++.+|+   .+-.+.+
T Consensus       164 ~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~-~-----~~~~~~---~~~a~~l  234 (336)
T 1f76_A          164 AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAP-D-----LSEEEL---IQVADSL  234 (336)
T ss_dssp             GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCS-C-----CCHHHH---HHHHHHH
T ss_pred             ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecC-C-----CCHHHH---HHHHHHH
Confidence            48999999742100 010    01  136778888776         7999887777 2     455543   3446778


Q ss_pred             HHcCCCEEEEe
Q psy7930          92 VESGADGFVIG  102 (146)
Q Consensus        92 ~~~GadG~VfG  102 (146)
                      .+.|+|+|++.
T Consensus       235 ~~~Gvd~i~vs  245 (336)
T 1f76_A          235 VRHNIDGVIAT  245 (336)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHcCCcEEEEe
Confidence            89999999974

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}

Probab=91.35  E-value=1.6  Score=34.34  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=51.4

Q ss_pred             CHHH-HHHHHHcCCCEEEecCCCCCCCCCC-----C---HHHHHHHHhhCCCcEEEEEc---------cCCCCC-----c
Q psy7930          18 SVAS-ALAAVRGGADRLELCAALSEGGLTP-----T---LGLYRVIKRLVLVPVFVMIR---------VRAGFD-----F   74 (146)
Q Consensus        18 s~~~-a~~A~~~GAdRIELc~~l~~GGlTP-----S---~g~i~~~~~~~~ipv~vMIR---------P~R~gd-----F   74 (146)
                      ++++ +..|.+.|.+-|||...  .+.+.+     +   ..-++...+..++.+..+--         |  .-+     |
T Consensus        16 ~~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p--~~~~~~~~~   91 (340)
T 2zds_A           16 PLEEVCRLARDFGYDGLELACW--GDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDA--IIDERHEAI   91 (340)
T ss_dssp             CHHHHHHHHHHHTCSEEEEESS--TTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEEEEEHHHHHHHHCS--CCSHHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEeccc--cccCCccccccCHHHHHHHHHHHHHcCCeEEEeeccccccccccc--ccccccccc
Confidence            3444 67788899999999863  112222     1   34555666667888765321         3  111     1


Q ss_pred             c----c---CH-----HHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          75 V----F---SQ-----AEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        75 ~----Y---s~-----~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .    .   ++     .-++.+++-|+.++++|++-+|+-
T Consensus        92 ~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~  131 (340)
T 2zds_A           92 LPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGF  131 (340)
T ss_dssp             SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            1    0   22     236789999999999999999973

>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*

Probab=91.34  E-value=1.2  Score=36.95  Aligned_cols=112  Identities=12%  Similarity=-0.013  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCCCEEEecC-CCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEccC----C--CCCcccCHHH-----HH
Q psy7930          20 ASALAAVRGGADRLELCA-ALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVR----A--GFDFVFSQAE-----KE   82 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~-~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~----R--~gdF~Ys~~E-----~~   82 (146)
                      +.+..+.+.|.+-|||.. .+...+.++     ....++...+..++.+..+--+-    +  .|+|.-.+.+     ++
T Consensus        37 e~l~~aa~~G~~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~  116 (393)
T 1xim_A           37 EAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIR  116 (393)
T ss_dssp             HHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEeecccCCCccccccccHHHHHHHHHHHHHhCCEEEEEecCCcCCcccccCCCCCCCHHHHHHHHH
Confidence            445667889999999972 122223332     23344444455577764432210    1  2455543333     57


Q ss_pred             HHHHHHHHHHHcCCCEEEEeee----cCCCCcC--------HHHHHHHHHHhC----CCCeEEee
Q psy7930          83 IMALDCHQFVESGADGFVIGAL----TGEQEID--------IEFIRQLKTIIG----DRPITFHR  131 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L----~~dg~iD--------~~~~~~Li~~a~----~~~vtFHR  131 (146)
                      .+++-|+.++++|++-+|+-.=    +..+..|        .+.++++.+.|.    ++.+.+|=
T Consensus       117 ~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~  181 (393)
T 1xim_A          117 KVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEP  181 (393)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCCCCcCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEec
Confidence            8999999999999999998321    1112334        245666666665    66777664

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=91.29  E-value=0.52  Score=38.43  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             ceeEEEecCHH----HHHHHHHcCCCEEEecCCCCC--------CC-C--CC--CHHHHHHHHhhCCCcEEEEEccCCCC
Q psy7930          10 TTLEVCVDSVA----SALAAVRGGADRLELCAALSE--------GG-L--TP--TLGLYRVIKRLVLVPVFVMIRVRAGF   72 (146)
Q Consensus        10 ~~lEvcv~s~~----~a~~A~~~GAdRIELc~~l~~--------GG-l--TP--S~g~i~~~~~~~~ipv~vMIRP~R~g   72 (146)
                      +.+.++..+++    .|..|++. +|-|||+.+-..        || +  .|  ...+++.+++.+++||.|=|||   |
T Consensus        61 ~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---G  136 (318)
T 1vhn_A           61 VAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL---G  136 (318)
T ss_dssp             EEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEES---C
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecC---C
Confidence            45666655554    45566677 999999853111        11 1  11  1234677777778898777777   2


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                       +.  ..|.   .+.++.+.+.|+|+|++-
T Consensus       137 -~~--~~~~---~~~a~~l~~~G~d~i~v~  160 (318)
T 1vhn_A          137 -WE--KNEV---EEIYRILVEEGVDEVFIH  160 (318)
T ss_dssp             -SS--SCCH---HHHHHHHHHTTCCEEEEE
T ss_pred             -CC--hHHH---HHHHHHHHHhCCCEEEEc
Confidence             22  2221   167888899999999884

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A

Probab=91.27  E-value=1.1  Score=37.08  Aligned_cols=114  Identities=12%  Similarity=-0.008  Sum_probs=66.4

Q ss_pred             CH-HHHHHHHHcCCCEEEecC-CCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEc-----cC-CCCCcccCHHH----
Q psy7930          18 SV-ASALAAVRGGADRLELCA-ALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIR-----VR-AGFDFVFSQAE----   80 (146)
Q Consensus        18 s~-~~a~~A~~~GAdRIELc~-~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIR-----P~-R~gdF~Ys~~E----   80 (146)
                      ++ +.+..|.+.|.+-|||.. .+...+.++     ....++...+..++.|..+--     |+ ..|+|.-.+.+    
T Consensus        34 ~~~e~l~~aa~~G~~~vEl~~~~~~p~~~~~~e~~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~  113 (387)
T 1bxb_A           34 DPVYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAY  113 (387)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEecCcccCCCCCChhhhHHHHHHHHHHHHHhCCEEEEEecCCCCCccccCCCCCCCCHHHHHH
Confidence            44 445678889999999972 122233332     233444444555777643321     10 02355544333    


Q ss_pred             -HHHHHHHHHHHHHcCCCEEEEeeecC----CCCcC--------HHHHHHHHHHhC----CCCeEEee
Q psy7930          81 -KEIMALDCHQFVESGADGFVIGALTG----EQEID--------IEFIRQLKTIIG----DRPITFHR  131 (146)
Q Consensus        81 -~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD--------~~~~~~Li~~a~----~~~vtFHR  131 (146)
                       ++.+++-|+.++++|++-+|+..=.+    ....|        .+.++++.+.|.    ++.+.+|=
T Consensus       114 ~i~~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~  181 (387)
T 1bxb_A          114 ALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEP  181 (387)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEECCCCCCccCCccCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence             57899999999999999998853110    11122        255667777665    66666653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=91.22  E-value=1.1  Score=38.56  Aligned_cols=71  Identities=23%  Similarity=0.335  Sum_probs=50.8

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCC-----------CCCCHHHHHHHHhh---CCCcEEEEEccCCCCCcccCHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGG-----------LTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GG-----------lTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      .+.+.+++..+++.|||-|-+ ++  .||           -.|....+..+.+.   .++||.+     -|| ....   
T Consensus       285 ~~~t~e~a~~l~~~G~d~I~v-~~--~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia-----~GG-I~~~---  352 (494)
T 1vrd_A          285 NVATPEGTEALIKAGADAVKV-GV--GPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIA-----DGG-IRYS---  352 (494)
T ss_dssp             EECSHHHHHHHHHTTCSEEEE-CS--SCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE-----ESC-CCSH---
T ss_pred             CcCCHHHHHHHHHcCCCEEEE-cC--CCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEE-----ECC-cCCH---
Confidence            578999999999999999998 32  122           14666666666554   5788754     233 3322   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe
Q psy7930          81 KEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG  102 (146)
                           .|+..+..+|||+|.+|
T Consensus       353 -----~di~kala~GAd~V~iG  369 (494)
T 1vrd_A          353 -----GDIVKALAAGAESVMVG  369 (494)
T ss_dssp             -----HHHHHHHHTTCSEEEES
T ss_pred             -----HHHHHHHHcCCCEEEEC
Confidence                 57778888999999988

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=91.14  E-value=0.61  Score=38.42  Aligned_cols=68  Identities=21%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh----CCCc-EEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL----VLVP-VFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~----~~ip-v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+..+.+.|||-+-+---..  | |++...++.+.+.    +.+| |.+     -||.   +.+++..+.+++   ++.|
T Consensus       182 aa~~a~~lGaD~iKv~~~~~--~-~g~~~~~~~vv~~~~~~~~~P~Vv~-----aGG~---~~~~~~~~~~~a---~~aG  247 (304)
T 1to3_A          182 AAKELGDSGADLYKVEMPLY--G-KGARSDLLTASQRLNGHINMPWVIL-----SSGV---DEKLFPRAVRVA---MEAG  247 (304)
T ss_dssp             HHHHHTTSSCSEEEECCGGG--G-CSCHHHHHHHHHHHHHTCCSCEEEC-----CTTS---CTTTHHHHHHHH---HHTT
T ss_pred             HHHHHHHcCCCEEEeCCCcC--C-CCCHHHHHHHHHhccccCCCCeEEE-----ecCC---CHHHHHHHHHHH---HHcC
Confidence            37888888999876654221  2 3377777777776    7888 543     4776   666666655554   6789


Q ss_pred             CCEEEEe
Q psy7930          96 ADGFVIG  102 (146)
Q Consensus        96 adG~VfG  102 (146)
                      ++||++|
T Consensus       248 a~Gv~vG  254 (304)
T 1to3_A          248 ASGFLAG  254 (304)
T ss_dssp             CCEEEES
T ss_pred             CeEEEEe
Confidence            9999999

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=91.04  E-value=0.69  Score=39.15  Aligned_cols=69  Identities=22%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCC----------------------------CCCHHHHHHHHhhC-CCcEEEEEc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGL----------------------------TPTLGLYRVIKRLV-LVPVFVMIR   67 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl----------------------------TPS~g~i~~~~~~~-~ipv~vMIR   67 (146)
                      .|.++|..+++.|||-|-+-..   ||+                            .|+...+.++++.+ ++||.+-  
T Consensus       199 ~s~~~A~~l~~aGad~I~V~g~---GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~--  273 (368)
T 3vkj_A          199 ISMETAKLLYSYGIKNFDTSGQ---GGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGS--  273 (368)
T ss_dssp             CCHHHHHHHHHTTCCEEECCCB---TSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEE--
T ss_pred             CCHHHHHHHHhCCCCEEEEeCC---CCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEE--
Confidence            5899999999999999998654   663                            24444566666666 4776542  


Q ss_pred             cCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          68 VRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        68 P~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                         || .. |.       .|+..+..+|||+|-+|
T Consensus       274 ---GG-I~-~~-------~d~~kal~lGA~~v~ig  296 (368)
T 3vkj_A          274 ---GG-IR-SG-------LDAAKAIALGADIAGMA  296 (368)
T ss_dssp             ---SS-CC-SH-------HHHHHHHHHTCSEEEEC
T ss_pred             ---CC-CC-CH-------HHHHHHHHcCCCEEEEc
Confidence               33 32 22       57777888999999999

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=91.03  E-value=0.6  Score=37.78  Aligned_cols=96  Identities=8%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             eeEEEecCHHHHHHHHHc-CCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRG-GADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~-GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..=|||.|.+++..|.+. |++=|=.+. -...++++.......+.+.+.-.+ +.|-=  +|  .+|.       +|++
T Consensus       152 ~~lvEv~~~eE~~~A~~l~g~~iIGinn-r~l~t~~~d~~~~~~l~~~ip~~~-~vIaE--sG--I~t~-------edv~  218 (251)
T 1i4n_A          152 DSLVEVHSREDLEKVFSVIRPKIIGINT-RDLDTFEIKKNVLWELLPLVPDDT-VVVAE--SG--IKDP-------RELK  218 (251)
T ss_dssp             EEEEEECSHHHHHHHHTTCCCSEEEEEC-BCTTTCCBCTTHHHHHGGGSCTTS-EEEEE--SC--CCCG-------GGHH
T ss_pred             eEEEEeCCHHHHHHHHhcCCCCEEEEeC-cccccCCCCHHHHHHHHHhCCCCC-EEEEe--CC--CCCH-------HHHH
Confidence            344678899999999999 999887765 345678888888887777652212 22222  44  2232       5688


Q ss_pred             HHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          90 QFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        90 ~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                      .++++ ++||++| .|+.... -...+++|+.+
T Consensus       219 ~~~~~-a~avLVG~aimr~~d-~~~~~~~l~~~  249 (251)
T 1i4n_A          219 DLRGK-VNAVLVGTSIMKAEN-PRRFLEEMRAW  249 (251)
T ss_dssp             HHTTT-CSEEEECHHHHHCSS-HHHHHHHHHHH
T ss_pred             HHHHh-CCEEEEcHHHcCCcC-HHHHHHHHHhC
Confidence            88999 9999999 2332221 23455666554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=91.02  E-value=1  Score=39.49  Aligned_cols=102  Identities=16%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             ceeEEEe----cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          10 TTLEVCV----DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        10 ~~lEvcv----~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..+-+.+    ++.+.+....++|+|.|++.++  .|....-..+++++++.. ++||.+-        -+.+.      
T Consensus       245 l~V~aavg~~~d~~era~aLveaGvd~I~Id~a--~g~~~~v~~~i~~i~~~~~~~~vi~g--------~v~t~------  308 (511)
T 3usb_A          245 LLVGAAVGVTADAMTRIDALVKASVDAIVLDTA--HGHSQGVIDKVKEVRAKYPSLNIIAG--------NVATA------  308 (511)
T ss_dssp             BCCEEEECSSTTHHHHHHHHHHTTCSEEEEECS--CTTSHHHHHHHHHHHHHCTTSEEEEE--------EECSH------
T ss_pred             eeeeeeeeeccchHHHHHHHHhhccceEEeccc--ccchhhhhhHHHHHHHhCCCceEEee--------eeccH------
Confidence            4444444    3467788889999999999875  344433456777777766 4676531        12232      


Q ss_pred             HHHHHHHHHcCCCEEEEeee----------cCCCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          85 ALDCHQFVESGADGFVIGAL----------TGEQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L----------~~dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                       ++.+.+.++|+|+|++|.=          +.-|.-+...+.++.++++  +.|+.
T Consensus       309 -e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVI  363 (511)
T 3usb_A          309 -EATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVI  363 (511)
T ss_dssp             -HHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEE
T ss_pred             -HHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEE
Confidence             3467788899999999641          1112345566666666665  35543

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=90.96  E-value=0.5  Score=39.97  Aligned_cols=70  Identities=24%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCCCEEEecCCC-------------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCcccCH
Q psy7930          20 ASALAAVRGGADRLELCAAL-------------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-------------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      +-|..++++|||-|-+-...             ..||+++      +...++++++.+  ++||...     ||  ..|.
T Consensus       238 ~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~-----GG--I~s~  310 (367)
T 3zwt_A          238 DIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGV-----GG--VSSG  310 (367)
T ss_dssp             HHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEE-----SS--CCSH
T ss_pred             HHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEE-----CC--CCCH
Confidence            34677889999999987533             2478765      357899999988  7998653     55  3344


Q ss_pred             HHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          79 AEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                             +|+..+.++|||+|.+|=
T Consensus       311 -------~da~~~l~~GAd~V~vgr  328 (367)
T 3zwt_A          311 -------QDALEKIRAGASLVQLYT  328 (367)
T ss_dssp             -------HHHHHHHHHTCSEEEESH
T ss_pred             -------HHHHHHHHcCCCEEEECH
Confidence                   455555667999999983

>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...

Probab=90.94  E-value=1.4  Score=36.47  Aligned_cols=112  Identities=14%  Similarity=0.046  Sum_probs=66.1

Q ss_pred             HHHHHHHHcCCCEEEecC-CCCCCCCCCC-----HHHHHHHHhhCCCcEEEEE-----ccC-CCCCcccCHHH-----HH
Q psy7930          20 ASALAAVRGGADRLELCA-ALSEGGLTPT-----LGLYRVIKRLVLVPVFVMI-----RVR-AGFDFVFSQAE-----KE   82 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~-~l~~GGlTPS-----~g~i~~~~~~~~ipv~vMI-----RP~-R~gdF~Ys~~E-----~~   82 (146)
                      +.+..|.+.|.+-|||.. .+...+.+|.     ..-+++..+..++.+..+-     -|. +.|+|.-.+.+     ++
T Consensus        37 e~l~~aa~~G~~~VEl~~~~~~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~  116 (386)
T 1muw_A           37 ETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALR  116 (386)
T ss_dssp             HHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeeCCCCCcccCcccccHHHHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHHHHHHHHH
Confidence            456677888999999975 2222333332     3344444445577765442     120 23456544333     57


Q ss_pred             HHHHHHHHHHHcCCCEEEEeeecC----CCCcC--------HHHHHHHHHHhC--C--CCeEEee
Q psy7930          83 IMALDCHQFVESGADGFVIGALTG----EQEID--------IEFIRQLKTIIG--D--RPITFHR  131 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L~~----dg~iD--------~~~~~~Li~~a~--~--~~vtFHR  131 (146)
                      .+++-|+.++++|++-+|+..=..    .+..|        .+.++++.+.|.  |  +.+.+|=
T Consensus       117 ~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~  181 (386)
T 1muw_A          117 KTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFAIEP  181 (386)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            899999999999999999832111    12334        244566666664  5  6777663

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=90.93  E-value=1.2  Score=37.79  Aligned_cols=72  Identities=25%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             EecCHHHHHHHHHcCCCEE-EecC----CCCCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRL-ELCA----ALSEGG--LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRI-ELc~----~l~~GG--lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      -+.+.+.|..|+++||.=| -||.    --..||  .-.+...++++++.+++||..-+|-  |.            ..+
T Consensus        23 d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av~iPV~~K~ri--g~------------~~e   88 (330)
T 2yzr_A           23 DVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCRI--GH------------TTE   88 (330)
T ss_dssp             EESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHCSSCEEEEEET--TC------------HHH
T ss_pred             eCCHHHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhcCCCeEEEEee--cc------------hHH
Confidence            6788999999999999999 3331    124567  8889999999999999999888876  32            244


Q ss_pred             HHHHHHcCCCEEE
Q psy7930          88 CHQFVESGADGFV  100 (146)
Q Consensus        88 I~~~~~~GadG~V  100 (146)
                      .+.+.++|||-|-
T Consensus        89 ~qilea~GaD~Id  101 (330)
T 2yzr_A           89 ALVLEAIGVDMID  101 (330)
T ss_dssp             HHHHHHTTCSEEE
T ss_pred             HHHHHHcCCCEEe
Confidence            5555669999884

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=90.93  E-value=0.57  Score=38.67  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             HHHHHHHHHcC--CCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGG--ADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~G--AdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+.+..+.+.|  ++-|++..  ..|...+....++.+++..+.|+.+   .   | ++-+.       +|++.+.++|+
T Consensus       108 ~~~a~~~~~~g~~~~~i~i~~--~~G~~~~~~~~i~~lr~~~~~~~vi---~---G-~v~s~-------e~A~~a~~aGa  171 (336)
T 1ypf_A          108 YEFVQQLAAEHLTPEYITIDI--AHGHSNAVINMIQHIKKHLPESFVI---A---G-NVGTP-------EAVRELENAGA  171 (336)
T ss_dssp             HHHHHHHHHTTCCCSEEEEEC--SSCCSHHHHHHHHHHHHHCTTSEEE---E---E-EECSH-------HHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCCCEEEEEC--CCCCcHHHHHHHHHHHHhCCCCEEE---E---C-CcCCH-------HHHHHHHHcCC
Confidence            45567778889  99999964  3353344577899999888533322   1   1 33332       47888999999


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |+|++|
T Consensus       172 d~Ivvs  177 (336)
T 1ypf_A          172 DATKVG  177 (336)
T ss_dssp             SEEEEC
T ss_pred             CEEEEe
Confidence            999995

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=90.91  E-value=0.22  Score=44.06  Aligned_cols=67  Identities=9%  Similarity=0.136  Sum_probs=52.0

Q ss_pred             CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee----ecC--CCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          58 VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA----LTG--EQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        58 ~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~----L~~--dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                      -++|++||.=    .+-+.+..-.+.+++|++.+|++|.++|-+++    +-+  .|+.|.+.++++++.++  |+.+.
T Consensus         9 ~~~~~~vmlp----~~~v~~~~~~~~w~~dl~~mk~~Gln~Vr~~V~W~~iEP~g~G~ydf~~~d~~id~a~~~GL~vi   83 (516)
T 1vem_A            9 PDYKAYLMAP----LKKIPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMI   83 (516)
T ss_dssp             TTCEEEEECC----SSCGGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEec----ccccCCCCCHHHHHHHHHHHHHcCCCEEEEecchhhccCCCCCccchHHHHHHHHHHHHCCCEEE
Confidence            3689999963    23333344557999999999999999999987    334  48999999999999987  66644

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=90.80  E-value=0.22  Score=41.03  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCc----EEEEEccCCCCCcccCHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVP----VFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ip----v~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      ..+|+-+++++++..|.+.|||.|=| ++       .+...++++++.++-+    =++-|-. .|| ..  .       
T Consensus       200 ~~i~vev~tlee~~~A~~aGaD~I~l-d~-------~~~~~l~~~v~~l~~~~~g~~~v~I~A-SGG-It--~-------  260 (294)
T 3c2e_A          200 VKIEVECLSEDEATEAIEAGADVIML-DN-------FKGDGLKMCAQSLKNKWNGKKHFLLEC-SGG-LN--L-------  260 (294)
T ss_dssp             SCEEEECSSSHHHHHHHHHTCSEEEC-CC----------------------------CCEEEE-ECC-CC--C-------
T ss_pred             CeEEEecCCHHHHHHHHHcCCCEEEE-CC-------CCHHHHHHHHHHhcccccCCCCeEEEE-ECC-CC--H-------
Confidence            46788889999999999999999987 33       2345666655544211    0123344 444 42  2       


Q ss_pred             HHHHHHHHcCCCEEEEeeecCC
Q psy7930          86 LDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      +.|+.+.+.|+|+|.+|.++.+
T Consensus       261 ~ni~~~~~~GvD~i~vGs~i~~  282 (294)
T 3c2e_A          261 DNLEEYLCDDIDIYSTSSIHQG  282 (294)
T ss_dssp             ------CCCSCSEEECGGGTSS
T ss_pred             HHHHHHHHcCCCEEEEechhcC
Confidence            4677888999999999997654

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=90.74  E-value=0.22  Score=41.92  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             HHHHHHHcCCCEEEecCCCCCC--CCCCCHHHHHHHHh---hCCCcEEEE--EccCC-CCCcccCHHHHHHHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEG--GLTPTLGLYRVIKR---LVLVPVFVM--IRVRA-GFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~G--GlTPS~g~i~~~~~---~~~ipv~vM--IRP~R-~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      ++..|.+.|||=+-+--.+..|  +..-....+.++.+   ..++|+.+|  +-| | +| -+=++..-+....-++.+.
T Consensus       133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~-r~gg-~v~~~~dp~~Va~aaRiAa  210 (307)
T 3fok_A          133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSN-WVNG-KVVNDLSTDAVIQSVAIAA  210 (307)
T ss_dssp             CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE-EETT-EEEECCSHHHHHHHHHHHH
T ss_pred             CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccc-cCCC-CcCCCCCHHHHHHHHHHHH
Confidence            4555678899998743222233  22122223333332   348999998  888 6 54 3333345567788899999


Q ss_pred             HcCCC----EEEEeeecCCCCcCHHHHHHHHHHhCCCCeEE
Q psy7930          93 ESGAD----GFVIGALTGEQEIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        93 ~~Gad----G~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ++|||    =+=.-. +       +.++++++.| +.|+.+
T Consensus       211 ELGADs~~tivK~~y-~-------e~f~~Vv~a~-~vPVVi  242 (307)
T 3fok_A          211 GLGNDSSYTWMKLPV-V-------EEMERVMEST-TMPTLL  242 (307)
T ss_dssp             TCSSCCSSEEEEEEC-C-------TTHHHHGGGC-SSCEEE
T ss_pred             HhCCCcCCCEEEeCC-c-------HHHHHHHHhC-CCCEEE
Confidence            99999    443322 2       2356666655 455544

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=90.70  E-value=0.61  Score=36.95  Aligned_cols=75  Identities=28%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             ccceeEEEecCHH----HHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHH
Q psy7930           8 NKTTLEVCVDSVA----SALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         8 ~~~~lEvcv~s~~----~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      .++++|.|.-+.+    -++.|.++|||-|--......||.|| +..+|+++. ..++||-    + -|| -. |.++..
T Consensus       121 lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~~~gat~~dv~~m~~~v-g~~v~Vk----a-aGG-ir-t~~~al  192 (220)
T 1ub3_A          121 LKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVA-QGRAQVK----A-AGG-IR-DRETAL  192 (220)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHH-TTSSEEE----E-ESS-CC-SHHHHH
T ss_pred             ceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhh-CCCCeEE----E-ECC-CC-CHHHHH
Confidence            3467888888876    45567788999999998888899998 677777654 3345553    3 333 33 566666


Q ss_pred             HHHHHHHHHHHcCCC
Q psy7930          83 IMALDCHQFVESGAD   97 (146)
Q Consensus        83 ~M~~dI~~~~~~Gad   97 (146)
                      .|.       ++|++
T Consensus       193 ~~i-------~aGa~  200 (220)
T 1ub3_A          193 RML-------KAGAS  200 (220)
T ss_dssp             HHH-------HTTCS
T ss_pred             HHH-------HCCCc
Confidence            666       38999

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=90.68  E-value=0.88  Score=35.73  Aligned_cols=69  Identities=20%  Similarity=0.216  Sum_probs=41.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCC-CCCCCC----C-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAAL-SEGGLT----P-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l-~~GGlT----P-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      .+.+....+.+.+-+ ++..+ ...|.+    | ...+++.+++..++||.+-     || - -|.       +++..+.
T Consensus       156 ~e~~~~~~~~~~g~v-~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~vg-----GG-I-~~~-------e~~~~~~  220 (262)
T 1rd5_A          156 EDRMKEITKASEGFV-YLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVG-----FG-I-SKP-------EHVKQIA  220 (262)
T ss_dssp             HHHHHHHHHHCCSCE-EEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEE-----SC-C-CSH-------HHHHHHH
T ss_pred             HHHHHHHHhcCCCeE-EEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEEEE-----CC-c-CCH-------HHHHHHH
Confidence            445555566666555 44322 112321    2 2347888888889998761     22 1 112       5677788


Q ss_pred             HcCCCEEEEe
Q psy7930          93 ESGADGFVIG  102 (146)
Q Consensus        93 ~~GadG~VfG  102 (146)
                      ++||||||+|
T Consensus       221 ~~GAdgvvVG  230 (262)
T 1rd5_A          221 QWGADGVIIG  230 (262)
T ss_dssp             HTTCSEEEEC
T ss_pred             HcCCCEEEEC
Confidence            8999999999

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=90.22  E-value=6.8  Score=34.21  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      ..+..|.++|++.|-+...++.     . ..++.+.+   ..+..|.+=|-.  ..+..|+.+.+..+   ++.+.++||
T Consensus       104 ~~v~~a~~~Gvd~i~if~~~sd-----~-~ni~~~i~~ak~~G~~v~~~i~~--~~~~~~~~e~~~~~---a~~l~~~Ga  172 (464)
T 2nx9_A          104 TFVERAVKNGMDVFRVFDAMND-----V-RNMQQALQAVKKMGAHAQGTLCY--TTSPVHNLQTWVDV---AQQLAELGV  172 (464)
T ss_dssp             HHHHHHHHTTCCEEEECCTTCC-----T-HHHHHHHHHHHHTTCEEEEEEEC--CCCTTCCHHHHHHH---HHHHHHTTC
T ss_pred             HHHHHHHhCCcCEEEEEEecCH-----H-HHHHHHHHHHHHCCCEEEEEEEe--eeCCCCCHHHHHHH---HHHHHHCCC
Confidence            4567899999999998865433     2 22333322   246677666644  45577876665555   455678899


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEe
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFH  130 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFH  130 (146)
                      +-|.+.  +-.|-.....+.+|+++.+   +.++-||
T Consensus       173 d~I~l~--DT~G~~~P~~v~~lv~~l~~~~~~~i~~H  207 (464)
T 2nx9_A          173 DSIALK--DMAGILTPYAAEELVSTLKKQVDVELHLH  207 (464)
T ss_dssp             SEEEEE--ETTSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CEEEEc--CCCCCcCHHHHHHHHHHHHHhcCCeEEEE
Confidence            977664  6677777888888877664   6788888

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=90.09  E-value=1.2  Score=37.07  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCC-----CCCHHH----HHHHHhh---CCCcEEEEEccCCCCCcccCH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGL-----TPTLGL----YRVIKRL---VLVPVFVMIRVRAGFDFVFSQ   78 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGl-----TPS~g~----i~~~~~~---~~ipv~vMIRP~R~gdF~Ys~   78 (146)
                      .-=+|++|++++.++.+.|+|-|=.-=.|..||+     ..|..-    ++++.+.   ++-.|.||.   .+|...- +
T Consensus       165 ~Ti~~v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc---~gGpIst-p  240 (286)
T 2p10_A          165 LTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILS---HGGPIAN-P  240 (286)
T ss_dssp             EECCEECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEE---ESTTCCS-H
T ss_pred             eEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEe---cCCCCCC-H
Confidence            3347999999999999999999866656655543     335443    3333322   344555554   3444442 2


Q ss_pred             HHHHHHHHHHHHHHHc--CCCEEEEe
Q psy7930          79 AEKEIMALDCHQFVES--GADGFVIG  102 (146)
Q Consensus        79 ~E~~~M~~dI~~~~~~--GadG~VfG  102 (146)
                             +|++.+.++  |++||.-+
T Consensus       241 -------eDv~~~l~~t~G~~G~~gA  259 (286)
T 2p10_A          241 -------EDARFILDSCQGCHGFYGA  259 (286)
T ss_dssp             -------HHHHHHHHHCTTCCEEEES
T ss_pred             -------HHHHHHHhcCCCccEEEee
Confidence                   677777788  99999765

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=90.00  E-value=0.23  Score=38.13  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCC--CH---HHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTP--TL---GLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~---g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      .+..+...+...|+|.|= +.....|+.++  +.   ..++.+++..     ++|+.+-     || -.  .       +
T Consensus       128 ~t~~e~~~~~~~~~d~vl-~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~-----GG-I~--~-------~  191 (230)
T 1rpx_A          128 GTPLTAIEYVLDAVDLVL-IMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVD-----GG-VG--P-------K  191 (230)
T ss_dssp             TCCGGGGTTTTTTCSEEE-EESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEE-----SS-CC--T-------T
T ss_pred             CCCHHHHHHHHhhCCEEE-EEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEE-----CC-CC--H-------H
Confidence            455566666778899773 44333343333  32   3456666554     5675442     22 11  1       4


Q ss_pred             HHHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHH
Q psy7930          87 DCHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        87 dI~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~  120 (146)
                      .+..+.+.|+||+|+| .+..... -.+++++|.+
T Consensus       192 n~~~~~~aGad~vvvgSaI~~a~d-p~~a~~~l~~  225 (230)
T 1rpx_A          192 NAYKVIEAGANALVAGSAVFGAPD-YAEAIKGIKT  225 (230)
T ss_dssp             THHHHHHHTCCEEEESHHHHTSSC-HHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEChhhhCCCC-HHHHHHHHHH
Confidence            6777888899999999 2332211 1345555543

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=89.94  E-value=0.89  Score=36.75  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCc-ccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDF-VFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF-~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      -++.+.+-+++|||-|=+=     |  .|+..+++++.+.+++|++++..|  ++.+ .+|          .+.++++|+
T Consensus       170 ai~ra~a~~eAGAd~i~~e-----~--~~~~~~~~~i~~~~~~P~n~~~~~--~~~~p~~~----------~~eL~~lGv  230 (255)
T 2qiw_A          170 AIKRIKLMEQAGARSVYPV-----G--LSTAEQVERLVDAVSVPVNITAHP--VDGHGAGD----------LATLAGLGV  230 (255)
T ss_dssp             HHHHHHHHHHHTCSEEEEC-----C--CCSHHHHHHHHTTCSSCBEEECBT--TTBBTTBC----------HHHHHHTTC
T ss_pred             HHHHHHHHHHcCCcEEEEc-----C--CCCHHHHHHHHHhCCCCEEEEecC--CCCCCCCC----------HHHHHHcCC
Confidence            3567888899999988772     2  389999999999999999988777  3311 133          356778999


Q ss_pred             CEEEEeee
Q psy7930          97 DGFVIGAL  104 (146)
Q Consensus        97 dG~VfG~L  104 (146)
                      +-+.+|..
T Consensus       231 ~~v~~~~~  238 (255)
T 2qiw_A          231 RRVTFGPL  238 (255)
T ss_dssp             CEEECTTH
T ss_pred             CEEEEHHH
Confidence            99999965

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=89.92  E-value=2.3  Score=33.95  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=54.4

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCC-cEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLV-PVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      +..|.+.|||-|-.-.       |.+...++.+++.+++ ||.+     -||-=.-+.+++..|   ++.+.+.||+|+.
T Consensus       165 ~~~a~~~GAD~vkt~~-------~~~~e~~~~~~~~~~~~pV~a-----sGGi~~~~~~~~l~~---i~~~~~aGA~Gvs  229 (263)
T 1w8s_A          165 ARIALELGADAMKIKY-------TGDPKTFSWAVKVAGKVPVLM-----SGGPKTKTEEDFLKQ---VEGVLEAGALGIA  229 (263)
T ss_dssp             HHHHHHHTCSEEEEEC-------CSSHHHHHHHHHHTTTSCEEE-----ECCSCCSSHHHHHHH---HHHHHHTTCCEEE
T ss_pred             HHHHHHcCCCEEEEcC-------CCCHHHHHHHHHhCCCCeEEE-----EeCCCCCCHHHHHHH---HHHHHHcCCeEEE
Confidence            5778999999977652       2378999999988877 8544     255321245555554   5555679999999


Q ss_pred             Eee--ecCCCCcCHHHHHHHHHHhC
Q psy7930         101 IGA--LTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       101 fG~--L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +|-  +..+ . -...+++|.+..+
T Consensus       230 vgraI~~~~-d-p~~~~~~l~~~v~  252 (263)
T 1w8s_A          230 VGRNVWQRR-D-ALKFARALAELVY  252 (263)
T ss_dssp             ESHHHHTST-T-HHHHHHHHHHHHC
T ss_pred             EehhhcCCc-C-HHHHHHHHHHHHh
Confidence            994  2332 1 1445555555544

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=89.90  E-value=0.88  Score=34.01  Aligned_cols=67  Identities=27%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             CHHH-HHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEE--EccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          18 SVAS-ALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVM--IRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        18 s~~~-a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vM--IRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      |+++ +..+.+.|+|-+-+--..  ..+|..|--..++++++. ++|+.+-  |+| -                ++..+.
T Consensus       115 ~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~~-~----------------~~~~~~  176 (207)
T 3ajx_A          115 DKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVKV-A----------------TIPAVQ  176 (207)
T ss_dssp             SHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCCG-G----------------GHHHHH
T ss_pred             ChHHHHHHHHHhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcCH-H----------------HHHHHH
Confidence            5555 666778899988443222  124554433334444332 6787654  444 1                777888


Q ss_pred             HcCCCEEEEe
Q psy7930          93 ESGADGFVIG  102 (146)
Q Consensus        93 ~~GadG~VfG  102 (146)
                      +.|||++|+|
T Consensus       177 ~aGad~vvvG  186 (207)
T 3ajx_A          177 KAGAEVAVAG  186 (207)
T ss_dssp             HTTCSEEEES
T ss_pred             HcCCCEEEEe
Confidence            9999999999

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=89.80  E-value=0.34  Score=38.93  Aligned_cols=67  Identities=16%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             HHHHHHcCCCEEEecCCC-------------------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCc
Q psy7930          22 ALAAVRGGADRLELCAAL-------------------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDF   74 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l-------------------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF   74 (146)
                      |..+++.|+|-|.+-...                   ..||++.      +...++++++.+  ++||...     ||  
T Consensus       178 a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~-----GG--  250 (311)
T 1jub_A          178 AEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGT-----GG--  250 (311)
T ss_dssp             HHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEE-----SS--
T ss_pred             HHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEE-----CC--
Confidence            678888999998876432                   1355543      367888888888  8997653     44  


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      ..|.+       |+..+..+|||+|.+|
T Consensus       251 I~~~~-------da~~~l~~GAd~V~vg  271 (311)
T 1jub_A          251 IETGQ-------DAFEHLLCGATMLQIG  271 (311)
T ss_dssp             CCSHH-------HHHHHHHHTCSEEEEC
T ss_pred             CCCHH-------HHHHHHHcCCCEEEEc
Confidence            33443       4445456799999998

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=89.77  E-value=0.19  Score=40.47  Aligned_cols=83  Identities=22%  Similarity=0.146  Sum_probs=46.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCC--C---CCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEG--G---LTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~G--G---lTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      ||.-.+..|.+.|-+-+-|...+...  .   -++....++...+.++||.++.=-|  +.    .++|++.|.+-+   
T Consensus        16 DSs~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~--g~----~~~e~e~l~~~l---   86 (237)
T 3rjz_A           16 DSNYALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQ--GE----KEKEVEDLKRVL---   86 (237)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC------------CHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECC--CC----chHHHHHHHHHH---
Confidence            34455566788886555553322222  1   2456677888888889998766444  21    245666665544   


Q ss_pred             HHcCCCEEEEeeecCCC
Q psy7930          92 VESGADGFVIGALTGEQ  108 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg  108 (146)
                      +++|++++|||.+..+.
T Consensus        87 ~~~~i~~vv~Gdi~s~y  103 (237)
T 3rjz_A           87 SGLKIQGIVAGALASKY  103 (237)
T ss_dssp             TTSCCSEEECC---CCS
T ss_pred             HhcCCcEEEECCcchHH
Confidence            45599999999998653

>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*

Probab=89.74  E-value=1.7  Score=36.11  Aligned_cols=112  Identities=17%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             HHHHHHHHHcCCCEEEecC-CCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEc-----cC-CCCCcccCHHH-----H
Q psy7930          19 VASALAAVRGGADRLELCA-ALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIR-----VR-AGFDFVFSQAE-----K   81 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~-~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIR-----P~-R~gdF~Ys~~E-----~   81 (146)
                      .+.+..|.+.|.+-|||.. .+...+.++     ....+++..+..++.|.++--     |. ..|+|.-.+.+     +
T Consensus        36 ~e~l~~aa~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i  115 (394)
T 1xla_A           36 VEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFAL  115 (394)
T ss_dssp             HHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCCHHHHHHHH
Confidence            3456678889999999986 222233322     133344444455776654321     10 13456544333     5


Q ss_pred             HHHHHHHHHHHHcCCCEEEE--eeec--CCCCcC--------HHHHHHHHHHhC--C--CCeEEe
Q psy7930          82 EIMALDCHQFVESGADGFVI--GALT--GEQEID--------IEFIRQLKTIIG--D--RPITFH  130 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~Vf--G~L~--~dg~iD--------~~~~~~Li~~a~--~--~~vtFH  130 (146)
                      +.+++-|+.++++|++-+|+  |.-.  ..+..+        .+.+++|.+.|.  |  +.+.+|
T Consensus       116 ~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE  180 (394)
T 1xla_A          116 AKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALE  180 (394)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            78999999999999999998  3210  001233        345666666664  5  666665

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=89.71  E-value=3  Score=34.78  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCC--C-CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          19 VASALAAVRGGADRLELCAAL--S-EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l--~-~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .+.+..+.+.|+|-+++-.+-  . .++.+.+...++.+++..++||.+   -     .+.|.+       |++.+.++|
T Consensus       168 ~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~---g-----gi~t~e-------~a~~~~~~G  232 (393)
T 2qr6_A          168 REIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIA---G-----GVNDYT-------TALHMMRTG  232 (393)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEE---E-----CCCSHH-------HHHHHHTTT
T ss_pred             HHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcCCCEEE---C-----CcCCHH-------HHHHHHHcC
Confidence            344566678899999875321  1 122111344577888888999877   2     234443       467788899


Q ss_pred             CCEEEEee-------ecCCCCcCHHHHHHHHHH
Q psy7930          96 ADGFVIGA-------LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        96 adG~VfG~-------L~~dg~iD~~~~~~Li~~  121 (146)
                      +|+|++|.       ++.-|.-..+.+.++.++
T Consensus       233 ad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~  265 (393)
T 2qr6_A          233 AVGIIVGGGENTNSLALGMEVSMATAIADVAAA  265 (393)
T ss_dssp             CSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHH
T ss_pred             CCEEEECCCcccccccCCCCCChHHHHHHHHHH
Confidence            99999974       111134455666666555

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=89.60  E-value=0.83  Score=35.67  Aligned_cols=72  Identities=24%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             eeEEEecCHH----HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930          11 TLEVCVDSVA----SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        11 ~lEvcv~s~~----~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ++|.+--+.+    -+..++++|||-|-.......||.  +...++.+++.+  ++||..     -||=.  |.++...|
T Consensus       123 i~e~~~l~~~~~~~~a~~a~eaGad~I~tstg~~~gga--~~~~i~~v~~~v~~~ipVia-----~GGI~--t~~da~~~  193 (225)
T 1mzh_A          123 IVETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGT--TLEEVRLIKSSAKGRIKVKA-----SGGIR--DLETAISM  193 (225)
T ss_dssp             ECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCSSSCC--CHHHHHHHHHHHTTSSEEEE-----ESSCC--SHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--CHHHHHHHHHHhCCCCcEEE-----ECCCC--CHHHHHHH
Confidence            4444444443    377888899999965555555663  567788887776  577654     35533  44444444


Q ss_pred             HHHHHHHHHcCCCE
Q psy7930          85 ALDCHQFVESGADG   98 (146)
Q Consensus        85 ~~dI~~~~~~GadG   98 (146)
                      .       ++|||-
T Consensus       194 l-------~aGA~~  200 (225)
T 1mzh_A          194 I-------EAGADR  200 (225)
T ss_dssp             H-------HTTCSE
T ss_pred             H-------HhCchH
Confidence            4       689994

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=89.56  E-value=2.7  Score=33.86  Aligned_cols=84  Identities=17%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      =|..++++ |.=|-....  .-=..+|+..++.+++.+++||.   |-    ||..++.+       |..++.+|||++.
T Consensus        66 iA~~y~~~-A~~IsVlTd--~~~F~gs~~dL~~ir~~v~lPvL---rK----Dfi~~~~q-------i~ea~~~GAD~il  128 (251)
T 1i4n_A           66 FIRMYDEL-ADAISILTE--KHYFKGDPAFVRAARNLTCRPIL---AK----DFYIDTVQ-------VKLASSVGADAIL  128 (251)
T ss_dssp             HHHHHHHH-CSEEEEECC--CSSSCCCTHHHHHHHTTCCSCEE---EE----CCCCSTHH-------HHHHHHTTCSEEE
T ss_pred             HHHHHHHh-CCceEEEec--ccccCCCHHHHHHHHHhCCCCEE---Ee----eCCCCHHH-------HHHHHHcCCCEEE
Confidence            45666677 988877642  22334588999999999999974   55    48877653       4558999999986


Q ss_pred             EeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930         101 IGALTGEQEIDIEFIRQLKTIIGDR  125 (146)
Q Consensus       101 fG~L~~dg~iD~~~~~~Li~~a~~~  125 (146)
                      +=+=    .++.+.+++|++.|+.+
T Consensus       129 Li~a----~l~~~~l~~l~~~a~~l  149 (251)
T 1i4n_A          129 IIAR----ILTAEQIKEIYEAAEEL  149 (251)
T ss_dssp             EEGG----GSCHHHHHHHHHHHHTT
T ss_pred             Eecc----cCCHHHHHHHHHHHHHc
Confidence            5331    36778999999999744

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=89.51  E-value=1.5  Score=36.74  Aligned_cols=101  Identities=17%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             HHHHHHHHcCCCEEEecCC--------------C---CCCCCC-----CCHHHHHHHHhhCCC-cEEEEEccCCCCCcc-
Q psy7930          20 ASALAAVRGGADRLELCAA--------------L---SEGGLT-----PTLGLYRVIKRLVLV-PVFVMIRVRAGFDFV-   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------------l---~~GGlT-----PS~g~i~~~~~~~~i-pv~vMIRP~R~gdF~-   75 (146)
                      +.|..|.++|+|-|||..+              .   .-||--     =...+++.+++.++- ||-|=|+| . +.|. 
T Consensus       165 ~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~-~-~~~~~  242 (365)
T 2gou_A          165 QAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAP-L-TTLNG  242 (365)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECS-S-CCTTS
T ss_pred             HHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcc-c-cccCC
Confidence            5667789999999999642              1   123420     023567778877743 88777777 3 2221 


Q ss_pred             -cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCC--CcCHHHHHHHHHHh
Q psy7930          76 -FSQAEKEIMALDCHQFVESGADGFVIGALTGEQ--EIDIEFIRQLKTII  122 (146)
Q Consensus        76 -Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg--~iD~~~~~~Li~~a  122 (146)
                       -.....+...+=++.+.+.|+|.+.+..=+-++  ....+.++++.+..
T Consensus       243 ~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~  292 (365)
T 2gou_A          243 TVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAY  292 (365)
T ss_dssp             CCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHC
Confidence             112234445555777889999999987532111  13455566665554

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=89.46  E-value=0.45  Score=37.55  Aligned_cols=86  Identities=10%  Similarity=0.081  Sum_probs=57.8

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH-
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE-   93 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~-   93 (146)
                      +.|++++..|.+.|||-|-+=-.-..||    ...++.+++.+ ++|+.    | -||=   |.       +.+..+.+ 
T Consensus       126 ~~t~~e~~~A~~~Gad~vk~FPa~~~~G----~~~lk~i~~~~~~ipvv----a-iGGI---~~-------~N~~~~l~~  186 (225)
T 1mxs_A          126 ISTPSEIMMGYALGYRRFKLFPAEISGG----VAAIKAFGGPFGDIRFC----P-TGGV---NP-------ANVRNYMAL  186 (225)
T ss_dssp             ECSHHHHHHHHTTTCCEEEETTHHHHTH----HHHHHHHHTTTTTCEEE----E-BSSC---CT-------TTHHHHHHS
T ss_pred             eCCHHHHHHHHHCCCCEEEEccCccccC----HHHHHHHHhhCCCCeEE----E-ECCC---CH-------HHHHHHHhc
Confidence            7899999999999999999822001122    56788888777 67763    5 5662   11       35667888 


Q ss_pred             cCCCEEEEeeecCCC---CcCHHHHHHHHH
Q psy7930          94 SGADGFVIGALTGEQ---EIDIEFIRQLKT  120 (146)
Q Consensus        94 ~GadG~VfG~L~~dg---~iD~~~~~~Li~  120 (146)
                      .|++|+..+.|.+..   .=|.+.++++.+
T Consensus       187 ~Ga~~v~gSai~~~~~i~~~~~~~i~~~a~  216 (225)
T 1mxs_A          187 PNVMCVGTTWMLDSSWIKNGDWARIEACSA  216 (225)
T ss_dssp             TTBCCEEECTTSCHHHHHTTCHHHHHHHHH
T ss_pred             cCCEEEEEchhcCchhhccCCHHHHHHHHH
Confidence            699999988887632   124555555543

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=89.22  E-value=0.39  Score=42.56  Aligned_cols=107  Identities=14%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             HHHHHHHHcCCCEEEecCCCC--------CCCCCCCHHHHHHHHhhCC-CcEEEEEccCC--------------------
Q psy7930          20 ASALAAVRGGADRLELCAALS--------EGGLTPTLGLYRVIKRLVL-VPVFVMIRVRA--------------------   70 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~--------~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R--------------------   70 (146)
                      +++....+.|||+|-+.+...        -++..-...+++++.+..+ =.|.++|=+||                    
T Consensus       351 ~~a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~  430 (555)
T 1jvn_A          351 EVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPG  430 (555)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCC
T ss_pred             HHHHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccC
Confidence            559999999999999997542        2223334567888877664 24777876622                    


Q ss_pred             -CCC-----cccCHH-----HHHHHHHHHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeE
Q psy7930          71 -GFD-----FVFSQA-----EKEIMALDCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPIT  128 (146)
Q Consensus        71 -~gd-----F~Ys~~-----E~~~M~~dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vt  128 (146)
                       .|.     .+|+..     ++.. .+-++.+.++|++.|++--.+.||.   .|.+.++++.++. +.||+
T Consensus       431 ~~g~~~~~~~v~~~Gw~~~~~~~~-~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~-~iPVI  500 (555)
T 1jvn_A          431 PNGEKYCWYQCTIKGGRESRDLGV-WELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAV-KIPVI  500 (555)
T ss_dssp             TTCCCEEEEEEEETTTTEEEEEEH-HHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHC-SSCEE
T ss_pred             CCCCcceeEEEEEecCccCCCCCH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhC-CccEE
Confidence             232     333211     0111 2457788899999999866677765   7999999998765 45554

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=89.19  E-value=7.3  Score=31.09  Aligned_cols=107  Identities=18%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHH----HHHHHHhhC-CCcEEEEEccC-CCCCc-ccCHHHHHHHHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLG----LYRVIKRLV-LVPVFVMIRVR-AGFDF-VFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g----~i~~~~~~~-~ipv~vMIRP~-R~gdF-~Ys~~E~~~M~~dI~~~~~   93 (146)
                      .+..+.+.|||=|||.-.+-.. .. +..    .++.+++.. ++|+.+-+|++ -||.| ..++++.-.+.+   .+.+
T Consensus        37 ~~~~~~~~~~D~vElRvD~l~~-~~-~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll~---~~~~  111 (257)
T 2yr1_A           37 EAEEVCRKQPDLLEWRADFFRA-ID-DQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIE---AICR  111 (257)
T ss_dssp             HHHHHHHSCCSEEEEEGGGCTT-TT-CHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHHH---HHHH
T ss_pred             HHHHHhhcCCCEEEEEeecccc-cC-cHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHHHH---HHHH
Confidence            3445566799999999876533 22 333    445566666 89999999973 35667 778877666544   4556


Q ss_pred             cC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEee-cccCCCC
Q psy7930          94 SG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHR-AFDVVRE  138 (146)
Q Consensus        94 ~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHR-AFD~~~d  138 (146)
                      +| +|-+=+=.     ..+. ..+++++.++  +..+..+- =|+.+++
T Consensus       112 ~g~~d~iDvEl-----~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~  154 (257)
T 2yr1_A          112 SGAIDLVDYEL-----AYGE-RIADVRRMTEECSVWLVVSRHYFDGTPR  154 (257)
T ss_dssp             HTCCSEEEEEG-----GGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred             cCCCCEEEEEC-----CCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcC
Confidence            67 78665542     1222 6667887553  55555444 4677664

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=89.15  E-value=1.8  Score=35.28  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCC-----CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +.+.+....+.+.+-|=+.+....-|.+.     -..+++.+++..++||.|        +|--+..      ++++...
T Consensus       162 ~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~v--------GfGIst~------e~~~~~~  227 (271)
T 3nav_A          162 SDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALL--------GFGISEP------AQVKQAI  227 (271)
T ss_dssp             CHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEE--------CSSCCSH------HHHHHHH
T ss_pred             CHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEE--------ECCCCCH------HHHHHHH
Confidence            35777778888888887777665555542     146788888888899876        2444321      3455567


Q ss_pred             HcCCCEEEEee
Q psy7930          93 ESGADGFVIGA  103 (146)
Q Consensus        93 ~~GadG~VfG~  103 (146)
                      +.||||+|+|=
T Consensus       228 ~~gADgvIVGS  238 (271)
T 3nav_A          228 EAGAAGAISGS  238 (271)
T ss_dssp             HTTCSEEEESH
T ss_pred             HcCCCEEEECH
Confidence            78999999993

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0

Probab=89.14  E-value=0.91  Score=36.45  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=59.9

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .|++-+..|...|+|-|=|--   +.|..|...+...+.....-+..++||. .+.+-           .||+.+.+.|+
T Consensus        25 ~~p~~~e~a~~~g~D~vilDl---Ehav~~~~k~~~~l~a~~~~~~~~~VRV-n~~~~-----------~di~~~ld~G~   89 (261)
T 3qz6_A           25 YNPDIVRIYAEAGLDYFIVDC---EHAAYTFREINHLVSVAKNAGVSVLVRI-PQVDR-----------AHVQRLLDIGA   89 (261)
T ss_dssp             CCTTHHHHHHHTTCSEEEEES---SSSCCCHHHHHHHHHHHHHHTCEEEEEC-SSCCH-----------HHHHHHHHHTC
T ss_pred             CCHHHHHHHhcCCcCEEEEec---cCCCCCHHHHHHHHHHHhhcCCeEEEEe-CCCCH-----------HHHHHHHhcCC
Confidence            678889999999999998863   4666666555444433222356779997 55542           38999999999


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +||++=..+     +.+..++++++++
T Consensus        90 ~gI~lP~v~-----saed~~~~~~~~~  111 (261)
T 3qz6_A           90 EGFMIPGVQ-----SAETMRETVRLAK  111 (261)
T ss_dssp             CEEEETTCC-----SHHHHHHHHHHHS
T ss_pred             CEEEECCcC-----CHHHHHHHHHHhc
Confidence            999876443     2445566666653

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=89.11  E-value=1.1  Score=35.97  Aligned_cols=84  Identities=11%  Similarity=0.061  Sum_probs=65.2

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      .+-|....+.||+.+-+..   +.|  +...+++++.+...+||.+      ||+-. +      +  |++.+. +||+-
T Consensus        41 ~~~A~~~~~~Ga~~l~vvD---L~~--~n~~~i~~i~~~~~~pv~v------gGGir-~------~--~~~~~l-~Ga~~   99 (260)
T 2agk_A           41 SYYAKLYKDRDVQGCHVIK---LGP--NNDDAAREALQESPQFLQV------GGGIN-D------T--NCLEWL-KWASK   99 (260)
T ss_dssp             HHHHHHHHHTTCTTCEEEE---ESS--SCHHHHHHHHHHSTTTSEE------ESSCC-T------T--THHHHT-TTCSC
T ss_pred             HHHHHHHHHcCCCEEEEEe---CCC--CCHHHHHHHHhcCCceEEE------eCCCC-H------H--HHHHHh-cCCCE
Confidence            3456888899999998864   123  7899999999999999874      44443 2      1  666777 99999


Q ss_pred             EEEeee-cCC-CCcCHHHHHHHHHHhC
Q psy7930          99 FVIGAL-TGE-QEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L-~~d-g~iD~~~~~~Li~~a~  123 (146)
                      |++|.- -.| |.++.+.++++++..+
T Consensus       100 Viigs~a~~~~g~~~p~~~~~~~~~~g  126 (260)
T 2agk_A          100 VIVTSWLFTKEGHFQLKRLERLTELCG  126 (260)
T ss_dssp             EEECGGGBCTTCCBCHHHHHHHHHHHC
T ss_pred             EEECcHHHhhcCCCCHHHHHHHHHHhC
Confidence            999974 234 8999999999999876

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=88.99  E-value=0.87  Score=35.09  Aligned_cols=72  Identities=19%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCC-CCCCCC----C-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCAAL-SEGGLT----P-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l-~~GGlT----P-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      .+..+...+...+++.+=.+-.. ..+|..    | ....++++++..++||.+     -|| -. +.       +++..
T Consensus       143 ~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~-----~GG-I~-~~-------e~i~~  208 (248)
T 1geq_A          143 NTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAV-----GFG-VS-KR-------EHVVS  208 (248)
T ss_dssp             TCCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEE-----ESC-CC-SH-------HHHHH
T ss_pred             CCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEE-----Eee-cC-CH-------HHHHH
Confidence            35667777777778733322222 112221    3 256888888888888754     233 22 11       46777


Q ss_pred             HHHcCCCEEEEe
Q psy7930          91 FVESGADGFVIG  102 (146)
Q Consensus        91 ~~~~GadG~VfG  102 (146)
                      +.++|+|||++|
T Consensus       209 ~~~~Gad~vivG  220 (248)
T 1geq_A          209 LLKEGANGVVVG  220 (248)
T ss_dssp             HHHTTCSEEEEC
T ss_pred             HHHcCCCEEEEc
Confidence            778999999999

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=88.56  E-value=1.3  Score=37.06  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC-----CHHHHHHHHhhCC-CcEEEEEccCCCCCcc-
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP-----TLGLYRVIKRLVL-VPVFVMIRVRAGFDFV-   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP-----S~g~i~~~~~~~~-ipv~vMIRP~R~gdF~-   75 (146)
                      +.|..|+++|+|=|||..+-                 .-||---     ...+++.+++.++ -||-|=|+| . ..|. 
T Consensus       165 ~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~-~-~~~~~  242 (364)
T 1vyr_A          165 QAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSP-I-GTFQN  242 (364)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECC-S-SCBTT
T ss_pred             HHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcc-c-ccccc
Confidence            56777899999999995420                 1133100     2446788888774 377666666 2 2132 


Q ss_pred             --cCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC--CCcCHHHHHHHHHHh
Q psy7930          76 --FSQAEKEIMALDCHQFVESGADGFVIGALTGE--QEIDIEFIRQLKTII  122 (146)
Q Consensus        76 --Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d--g~iD~~~~~~Li~~a  122 (146)
                        -.....+...+=++.+.+.|+|.+.+..=+-.  -..+.+.++++.+..
T Consensus       243 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~  293 (364)
T 1vyr_A          243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERF  293 (364)
T ss_dssp             BCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHC
Confidence              11224445555677888999999988752211  123556666665554

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=88.43  E-value=1.6  Score=32.71  Aligned_cols=94  Identities=15%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             EEEec--CHHHHHHHHH---cCCCEEEecCCCCCCCCCCCHHHHHHHHhh-CCCcEE--EEEccCCCCCcccCHHHHHHH
Q psy7930          13 EVCVD--SVASALAAVR---GGADRLELCAALSEGGLTPTLGLYRVIKRL-VLVPVF--VMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus        13 Evcv~--s~~~a~~A~~---~GAdRIELc~~l~~GGlTPS~g~i~~~~~~-~~ipv~--vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      =+|.|  +++++....+   .|+|-||+=-.+.   ++-....++++++. .++||+  .|+.+  +.      .     
T Consensus         4 i~a~D~~~~~~~~~~~~~~~~~~diie~G~p~~---~~~g~~~i~~ir~~~~~~~i~~~~~~~~--~~------~-----   67 (211)
T 3f4w_A            4 QLALDELTLPEAMVFMDKVVDDVDIIEVGTPFL---IREGVNAIKAIKEKYPHKEVLADAKIMD--GG------H-----   67 (211)
T ss_dssp             EEEECSCCHHHHHHHHHHHGGGCSEEEECHHHH---HHHTTHHHHHHHHHCTTSEEEEEEEECS--CH------H-----
T ss_pred             EEEeCCCCHHHHHHHHHHhhcCccEEEeCcHHH---HhccHHHHHHHHHhCCCCEEEEEEEecc--ch------H-----
Confidence            34554  4554444332   5899999743110   11225789999887 488874  34443  21      1     


Q ss_pred             HHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeE
Q psy7930          85 ALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPIT  128 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vt  128 (146)
                       ..++.++++|+|+++++.+..     .+.++++++.++  ++++.
T Consensus        68 -~~~~~~~~~Gad~v~v~~~~~-----~~~~~~~~~~~~~~g~~~~  107 (211)
T 3f4w_A           68 -FESQLLFDAGADYVTVLGVTD-----VLTIQSCIRAAKEAGKQVV  107 (211)
T ss_dssp             -HHHHHHHHTTCSEEEEETTSC-----HHHHHHHHHHHHHHTCEEE
T ss_pred             -HHHHHHHhcCCCEEEEeCCCC-----hhHHHHHHHHHHHcCCeEE
Confidence             237889999999999987642     345566666665  44443

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=88.41  E-value=2  Score=34.44  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=71.5

Q ss_pred             cCHHH----HHHHHHcCCCEEEecCCCCCCCCCCCHH----HHHHHHhhC-CCcEEEEEccCC-CCCcccCHHHHHHHHH
Q psy7930          17 DSVAS----ALAAVRGGADRLELCAALSEGGLTPTLG----LYRVIKRLV-LVPVFVMIRVRA-GFDFVFSQAEKEIMAL   86 (146)
Q Consensus        17 ~s~~~----a~~A~~~GAdRIELc~~l~~GGlTPS~g----~i~~~~~~~-~ipv~vMIRP~R-~gdF~Ys~~E~~~M~~   86 (146)
                      .|.++    +..+...|||=|||.-.+-..  .|+..    .+..+++.. ++|+.+-+|+.. ||-|..++++...+..
T Consensus        29 ~t~~e~l~~a~~~~~~~aD~vElR~D~l~~--~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~  106 (258)
T 4h3d_A           29 KNKKDIIKEAKELKDACLDIIEWRVDFFEN--VENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNK  106 (258)
T ss_dssp             SSHHHHHHHHHHHTTSSCSEEEEEGGGCTT--TTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeeccccc--cCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHH
Confidence            55544    455667899999999876543  23443    344444444 799999999833 5678888887766554


Q ss_pred             HHHHHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEeecccCCCCc
Q psy7930          87 DCHQFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFHRAFDVVREP  139 (146)
Q Consensus        87 dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFHRAFD~~~d~  139 (146)
                      .   +.+.| +|-+=+     +-..+.+..+++++.++  +..  +.+| =|+.+++.
T Consensus       107 ~---~~~~~~~d~iDv-----El~~~~~~~~~l~~~a~~~~~kiI~S~H-df~~TP~~  155 (258)
T 4h3d_A          107 E---ISNTGLVDLIDV-----ELFMGDEVIDEVVNFAHKKEVKVIISNH-DFNKTPKK  155 (258)
T ss_dssp             H---HHHTTCCSEEEE-----EGGGCHHHHHHHHHHHHHTTCEEEEEEE-ESSCCCCH
T ss_pred             H---HHhcCCchhhHH-----hhhccHHHHHHHHHHHHhCCCEEEEEEe-cCCCCCCH
Confidence            3   34445 554433     33456778889988765  444  3455 47776643

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=88.02  E-value=3.4  Score=31.00  Aligned_cols=84  Identities=17%  Similarity=0.183  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +.+..|.+.|||.|-|      |...+.   +..+++..+. +.+-+.|       .|..|       +..+.+.|+|.+
T Consensus        85 ~~~~~a~~~gad~v~l------~~~~~~---~~~~~~~~g~-~~~~~s~-------~t~~e-------~~~a~~~g~d~v  140 (227)
T 2tps_A           85 DDVELALNLKADGIHI------GQEDAN---AKEVRAAIGD-MILGVSA-------HTMSE-------VKQAEEDGADYV  140 (227)
T ss_dssp             SCHHHHHHHTCSEEEE------CTTSSC---HHHHHHHHTT-SEEEEEE-------CSHHH-------HHHHHHHTCSEE
T ss_pred             CHHHHHHHcCCCEEEE------CCCccC---HHHHHHhcCC-cEEEEec-------CCHHH-------HHHHHhCCCCEE
Confidence            3556788899999977      223344   4555554554 4455555       35544       334557899999


Q ss_pred             EEeeecCC-------CCcCHHHHHHHHHHhCCCCe
Q psy7930         100 VIGALTGE-------QEIDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus       100 VfG~L~~d-------g~iD~~~~~~Li~~a~~~~v  127 (146)
                      ++|.+-+.       ...+.+.++++.+...+.|+
T Consensus       141 ~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pv  175 (227)
T 2tps_A          141 GLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPI  175 (227)
T ss_dssp             EECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCE
T ss_pred             EECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCE
Confidence            99865442       24678888888765533554

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=87.96  E-value=1.1  Score=36.45  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             HHHHHHcCCCEEEecCCC-------------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHH
Q psy7930          22 ALAAVRGGADRLELCAAL-------------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l-------------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      |..+++.|+|-|.+-...             ..||++.      +...++++++.+  ++||...     ||  ..|.+ 
T Consensus       231 a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~-----GG--I~~~~-  302 (336)
T 1f76_A          231 ADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGV-----GG--IDSVI-  302 (336)
T ss_dssp             HHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEE-----SS--CCSHH-
T ss_pred             HHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEE-----CC--CCCHH-
Confidence            788999999999986532             2456542      347788888887  8998653     44  33443 


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe
Q psy7930          81 KEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG  102 (146)
                            |+..+.++|||+|-+|
T Consensus       303 ------da~~~l~~GAd~V~ig  318 (336)
T 1f76_A          303 ------AAREKIAAGASLVQIY  318 (336)
T ss_dssp             ------HHHHHHHHTCSEEEES
T ss_pred             ------HHHHHHHCCCCEEEee
Confidence                  4455556799999988

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=87.91  E-value=0.7  Score=37.30  Aligned_cols=71  Identities=14%  Similarity=0.166  Sum_probs=46.0

Q ss_pred             CCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930          29 GADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        29 GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      |-.-|=|-+    -|.|+...+++.+++.. ++|+.|=     +|  .-|.+       +++.+.+ ||||+|+|=.--+
T Consensus       159 g~~~vY~e~----sG~~g~~~~v~~ir~~~~~~pv~vG-----fG--I~~~e-------~a~~~~~-gAD~VVVGSai~~  219 (235)
T 3w01_A          159 RLPVMYIEY----SGIYGDVSKVQAVSEHLTETQLFYG-----GG--ISSEQ-------QATEMAA-IADTIIVGDIIYK  219 (235)
T ss_dssp             CCSEEEEEC----TTSCCCHHHHHHHHTTCSSSEEEEE-----SC--CCSHH-------HHHHHHT-TSSEEEECTHHHH
T ss_pred             CCCEEEEec----CCCcCCHHHHHHHHHhcCCCCEEEE-----CC--cCCHH-------HHHHHHc-CCCEEEECCceec
Confidence            666666654    27788999999999988 8898662     22  22333       3344556 9999999943222


Q ss_pred             CCcCHHHHHHHHHH
Q psy7930         108 QEIDIEFIRQLKTI  121 (146)
Q Consensus       108 g~iD~~~~~~Li~~  121 (146)
                         |.+..+++++.
T Consensus       220 ---~~~~~~e~v~~  230 (235)
T 3w01_A          220 ---DIKKALKTVKI  230 (235)
T ss_dssp             ---CHHHHHHTTCC
T ss_pred             ---CHHHHHHHHHH
Confidence               45555555543

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=87.33  E-value=0.54  Score=37.82  Aligned_cols=71  Identities=23%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             CHHH----HHHHHHcC-CCEEEecCCC-------------------CCCCCCC------CHHHHHHHHhhC-CCcEEEEE
Q psy7930          18 SVAS----ALAAVRGG-ADRLELCAAL-------------------SEGGLTP------TLGLYRVIKRLV-LVPVFVMI   66 (146)
Q Consensus        18 s~~~----a~~A~~~G-AdRIELc~~l-------------------~~GGlTP------S~g~i~~~~~~~-~ipv~vMI   66 (146)
                      +.++    +..+++.| +|-|.+-...                   ..||++.      +...++++++.+ ++||... 
T Consensus       172 ~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~-  250 (314)
T 2e6f_A          172 DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGC-  250 (314)
T ss_dssp             CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEE-
T ss_pred             CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEE-
Confidence            4555    77888999 9988765422                   2355543      357888888888 8997543 


Q ss_pred             ccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          67 RVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        67 RP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                          ||  +.|.+       |+..+..+|||+|.+|
T Consensus       251 ----GG--I~~~~-------da~~~l~~GAd~V~ig  273 (314)
T 2e6f_A          251 ----GG--VYSGE-------DAFLHILAGASMVQVG  273 (314)
T ss_dssp             ----SS--CCSHH-------HHHHHHHHTCSSEEEC
T ss_pred             ----CC--CCCHH-------HHHHHHHcCCCEEEEc
Confidence                44  33443       4455556899999998

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=87.30  E-value=4.8  Score=33.13  Aligned_cols=76  Identities=22%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             HHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEE--ccCC----CCCccc---CHHHHHHHHHHHHHHHH
Q psy7930          23 LAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMI--RVRA----GFDFVF---SQAEKEIMALDCHQFVE   93 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMI--RP~R----~gdF~Y---s~~E~~~M~~dI~~~~~   93 (146)
                      ....+.||+=|-|=     ||.. ....++.+.+ .+|||.--|  .| +    -|+|.-   ++++.+.+.+|.+.+.+
T Consensus       113 ~rl~kaGa~aVklE-----dg~~-~~~~i~~l~~-~GIpv~gHlgltP-q~~~~~gg~~vqgrt~~~a~~~i~rA~a~~e  184 (275)
T 3vav_A          113 VKLMRAGAQMVKFE-----GGEW-LAETVRFLVE-RAVPVCAHVGLTP-QSVHAFGGFKVQGKTEAGAAQLLRDARAVEE  184 (275)
T ss_dssp             HHHHHTTCSEEEEE-----CCGG-GHHHHHHHHH-TTCCEEEEEESCG-GGHHHHC---CCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEC-----Cchh-HHHHHHHHHH-CCCCEEEecCCCc-eEEeccCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence            44566799888763     5544 3567776655 589987655  35 3    255653   57888999999999999


Q ss_pred             cCCCEEEEeeecC
Q psy7930          94 SGADGFVIGALTG  106 (146)
Q Consensus        94 ~GadG~VfG~L~~  106 (146)
                      +||+++|+=++..
T Consensus       185 AGA~~ivlE~vp~  197 (275)
T 3vav_A          185 AGAQLIVLEAVPT  197 (275)
T ss_dssp             HTCSEEEEESCCH
T ss_pred             cCCCEEEecCCCH
Confidence            9999999987753

>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*

Probab=87.30  E-value=0.6  Score=42.02  Aligned_cols=74  Identities=22%  Similarity=0.399  Sum_probs=55.0

Q ss_pred             CCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||.=-   ...+.|    ...+.|..+++.+|++|+|||.+    |+.-.  .++.|...-++|.+.++  ++++
T Consensus         9 ~vpvyVMlPLd~V~~~~~~----~~~~~l~a~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl   84 (535)
T 2xfr_A            9 YVQVYVMLPLDAVSVNNRF----EKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKL   84 (535)
T ss_dssp             CCEEEEECCTTSSCTTSCC----CCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEE
T ss_pred             CccEEEeeecceecCCCee----CCHHHHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence            6899999854   012222    24578899999999999999998    55554  67899999999999997  6766


Q ss_pred             EEeecccCC
Q psy7930         128 TFHRAFDVV  136 (146)
Q Consensus       128 tFHRAFD~~  136 (146)
                      .-=+.|-+|
T Consensus        85 q~vmSFHqC   93 (535)
T 2xfr_A           85 QAIMSFHQC   93 (535)
T ss_dssp             EEEEECSCB
T ss_pred             EEEEEeeec
Confidence            545555544

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=87.25  E-value=4  Score=34.13  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=48.9

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ++.+.+-+++|||-|=+=      |+ |+...++++.+.+++|+.+.+-+ -+..-.++          .+.+.++|..-
T Consensus       192 i~Ra~Ay~eAGAd~i~~e------~~-~~~e~~~~i~~~l~~P~lan~~~-~g~~~~~~----------~~eL~~lGv~~  253 (318)
T 1zlp_A          192 IRRANLYKEAGADATFVE------AP-ANVDELKEVSAKTKGLRIANMIE-GGKTPLHT----------PEEFKEMGFHL  253 (318)
T ss_dssp             HHHHHHHHHTTCSEEEEC------CC-CSHHHHHHHHHHSCSEEEEEECT-TSSSCCCC----------HHHHHHHTCCE
T ss_pred             HHHHHHHHHcCCCEEEEc------CC-CCHHHHHHHHHhcCCCEEEEecc-CCCCCCCC----------HHHHHHcCCeE
Confidence            457778899999987652      33 89999999999999998776665 33223445          44566778888


Q ss_pred             EEEee
Q psy7930          99 FVIGA  103 (146)
Q Consensus        99 ~VfG~  103 (146)
                      +.+|.
T Consensus       254 v~~~~  258 (318)
T 1zlp_A          254 IAHSL  258 (318)
T ss_dssp             EEECS
T ss_pred             EEEch
Confidence            77774

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=87.23  E-value=5.1  Score=29.21  Aligned_cols=90  Identities=17%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-+..+...|+..+=+.+--..| |--+....++++.+..++|+.++     +| +.        +.+|+..+.+.|++|
T Consensus       134 ~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~-----~g-~~--------~~~~~~~~~~~G~~~  199 (237)
T 3cwo_X          134 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS-----GG-AG--------KMEHFLEAFLAGADA  199 (237)
T ss_dssp             HHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEE-----SC-CC--------SHHHHHHHHHHTCSE
T ss_pred             HHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEec-----CC-CC--------CHHHHHHHHHcCcHH
Confidence            44566777788877544310122 22234778998888889998764     22 11        124455556689999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +++|-.--.+.+|...+++.+...+
T Consensus       200 ~~vg~a~~~~~~~~~~~~~~l~~~~  224 (237)
T 3cwo_X          200 ALAASVFHFREIDVRELKEYLKKHG  224 (237)
T ss_dssp             EEESHHHHTTSSCHHHHHHHHHTTT
T ss_pred             HhhhHHHHcCCCCHHHHHHHHHHCC
Confidence            9999655467789888887766443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=87.19  E-value=3.3  Score=38.86  Aligned_cols=69  Identities=26%  Similarity=0.350  Sum_probs=46.3

Q ss_pred             HHHHHHcCCCEEEecCCCCC----C--C----CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          22 ALAAVRGGADRLELCAALSE----G--G----LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~----G--G----lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      +..+++.|+|-|||+-+-..    +  |    ..|  ...+++.+++.+++||.|=++| ...    +      +.+-++
T Consensus       654 a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~-~~~----~------~~~~a~  722 (1025)
T 1gte_A          654 SRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP-NVT----D------IVSIAR  722 (1025)
T ss_dssp             HHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS-CSS----C------HHHHHH
T ss_pred             HHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCC-ChH----H------HHHHHH
Confidence            34455789999999753211    1  1    122  1347777788889999999999 332    1      334466


Q ss_pred             HHHHcCCCEEEE
Q psy7930          90 QFVESGADGFVI  101 (146)
Q Consensus        90 ~~~~~GadG~Vf  101 (146)
                      .+.++|+|||++
T Consensus       723 ~~~~~G~d~i~v  734 (1025)
T 1gte_A          723 AAKEGGADGVTA  734 (1025)
T ss_dssp             HHHHHTCSEEEE
T ss_pred             HHHHcCCCEEEE
Confidence            778899999998

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=87.10  E-value=0.69  Score=37.19  Aligned_cols=46  Identities=20%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhCCCcEEEEE
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLVLVPVFVMI   66 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~~ipv~vMI   66 (146)
                      .|.+-+.+..++|||=|||-.   ..|.|.  ...+++++++ .++||..|.
T Consensus        21 ~t~~~~~~l~~~GaD~ielG~---S~Gvt~~~~~~~v~~ir~-~~~Pivlm~   68 (240)
T 1viz_A           21 LPDEQLEILCESGTDAVIIGG---SDGVTEDNVLRMMSKVRR-FLVPCVLEV   68 (240)
T ss_dssp             CCHHHHHHHHTSCCSEEEECC-------CHHHHHHHHHHHTT-SSSCEEEEC
T ss_pred             ccHHHHHHHHHcCCCEEEECC---CCCCCHHHHHHHHHHhhC-cCCCEEEec
Confidence            345678888999999999986   377887  5778888888 899998775

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=87.06  E-value=2  Score=33.81  Aligned_cols=78  Identities=10%  Similarity=-0.040  Sum_probs=49.7

Q ss_pred             HHHHHcCCCEEEecCCCCCCCCCC------CHHHHHHHHhhCCCcEEEEEcc--C-CCCCcccCHHH-----HHHHHHHH
Q psy7930          23 LAAVRGGADRLELCAALSEGGLTP------TLGLYRVIKRLVLVPVFVMIRV--R-AGFDFVFSQAE-----KEIMALDC   88 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGlTP------S~g~i~~~~~~~~ipv~vMIRP--~-R~gdF~Ys~~E-----~~~M~~dI   88 (146)
                      ..|.+.|.+-|||..... ...-|      ....+++..+..++.+..+.-+  . +..+|.-.+.+     ++.+++-|
T Consensus        42 ~~a~~~G~~~vEl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i  120 (316)
T 3qxb_A           42 LVRDDLGLEYVQYTYDLT-DPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAI  120 (316)
T ss_dssp             HHHHTSCCCEEEEETTTS-CTTSCHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEeecccc-CccccccchhhHHHHHHHHHHHcCCeEEEeeccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence            455789999999986421 11112      2445556666678988765432  0 11244433333     56789999


Q ss_pred             HHHHHcCCCEEEE
Q psy7930          89 HQFVESGADGFVI  101 (146)
Q Consensus        89 ~~~~~~GadG~Vf  101 (146)
                      +.++++|++.+|+
T Consensus       121 ~~A~~lGa~~v~~  133 (316)
T 3qxb_A          121 DMTAAMEVPATGM  133 (316)
T ss_dssp             HHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEe
Confidence            9999999999874

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=87.05  E-value=1.2  Score=37.72  Aligned_cols=70  Identities=19%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCC--------------------CCCHHHHHHHHhhC-CCcEEEEEccCCCCCcc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGL--------------------TPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl--------------------TPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~   75 (146)
                      .+.++|..+++.|||-|-+-..   ||+                    .|+...+..++... ++||.+     -|| ..
T Consensus       218 ~s~e~A~~l~~aGad~I~V~g~---GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia-----~GG-I~  288 (365)
T 3sr7_A          218 MDVKTIQTAIDLGVKTVDISGR---GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILA-----SGG-IR  288 (365)
T ss_dssp             CCHHHHHHHHHHTCCEEECCCB---C--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEE-----CSS-CC
T ss_pred             CCHHHHHHHHHcCCCEEEEeCC---CCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEE-----eCC-CC
Confidence            6899999999999999988543   444                    24445555554322 566543     233 33


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      ..        .|+..+..+|||+|.+|-
T Consensus       289 ~g--------~Dv~KaLalGAdaV~ig~  308 (365)
T 3sr7_A          289 HP--------LDIIKALVLGAKAVGLSR  308 (365)
T ss_dssp             SH--------HHHHHHHHHTCSEEEESH
T ss_pred             CH--------HHHHHHHHcCCCEEEECH
Confidence            32        577778889999999994

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=87.03  E-value=2.6  Score=35.56  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhCCC-cEEEEEccCCCCCcc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLVLV-PVFVMIRVRAGFDFV   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~~i-pv~vMIRP~R~gdF~   75 (146)
                      +.|..|+++|+|-|||..+-                 .-|| +.      ...+++.+++.++- ||-|=|+| . ..|.
T Consensus       170 ~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGG-slenR~r~~~eiv~aVr~avg~~~v~vrls~-~-~~~~  246 (377)
T 2r14_A          170 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGG-SIENRARFPLEVVDAVAEVFGPERVGIRLTP-F-LELF  246 (377)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-T-CCCT
T ss_pred             HHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCc-chhhchHHHHHHHHHHHHHcCCCcEEEEecc-c-cccC
Confidence            56778899999999996420                 1234 22      24567778877743 88777777 3 1121


Q ss_pred             --cCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          76 --FSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        76 --Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                        ......+...+=++.+.+.|+|.+.+..
T Consensus       247 ~~~~~~~~~~~~~la~~le~~Gvd~i~v~~  276 (377)
T 2r14_A          247 GLTDDEPEAMAFYLAGELDRRGLAYLHFNE  276 (377)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence              0112334445557788889999998853

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=87.03  E-value=0.84  Score=34.38  Aligned_cols=88  Identities=19%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             cCHHHHHHHHHcCCCEEEecC-CCCCCCCCCCH---HHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCA-ALSEGGLTPTL---GLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~-~l~~GGlTPS~---g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      .+..+...+...++|.|-+.+ +...+|.+-+.   ..++.+++..     ++|+.+  =+   | -.  .       ++
T Consensus       119 ~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v--~G---G-I~--~-------~~  183 (220)
T 2fli_A          119 GTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV--DG---G-VD--N-------KT  183 (220)
T ss_dssp             TSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE--ES---S-CC--T-------TT
T ss_pred             CCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE--EC---c-CC--H-------HH
Confidence            455566666677899885522 33445544332   3355555543     566543  22   2 11  1       57


Q ss_pred             HHHHHHcCCCEEEEee-ecCCCCcCH-HHHHHHHHH
Q psy7930          88 CHQFVESGADGFVIGA-LTGEQEIDI-EFIRQLKTI  121 (146)
Q Consensus        88 I~~~~~~GadG~VfG~-L~~dg~iD~-~~~~~Li~~  121 (146)
                      +..++++|+||+|+|= +...  -|. ++.++|.+.
T Consensus       184 ~~~~~~~Gad~vvvGsai~~~--~d~~~a~~~~~~~  217 (220)
T 2fli_A          184 IRACYEAGANVFVAGSYLFKA--SDLVSQVQTLRTA  217 (220)
T ss_dssp             HHHHHHHTCCEEEESHHHHTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEChHHhCC--CCHHHHHHHHHHH
Confidence            8788889999999992 3322  343 455555543

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=86.93  E-value=0.67  Score=37.76  Aligned_cols=69  Identities=22%  Similarity=0.351  Sum_probs=46.6

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCC--CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLT--PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlT--PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+-+..+++.|+|-|.+-..-..+|.+  |...+++++++  ++||.+     -||  .+|.++.+.+.+      +.||
T Consensus       143 ~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~~~i~~i~~--~ipVi~-----~Gg--I~s~~da~~~l~------~~ga  207 (318)
T 1vhn_A          143 EEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFV-----SGD--IFTPEDAKRALE------ESGC  207 (318)
T ss_dssp             HHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC--SSCEEE-----ESS--CCSHHHHHHHHH------HHCC
T ss_pred             HHHHHHHHHhCCCEEEEcCCCccccCCCCcCHHHHHHHHc--CCeEEE-----ECC--cCCHHHHHHHHH------cCCC
Confidence            477899999999999996544445544  35566666666  788743     244  345555544332      3699


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |+|.+|
T Consensus       208 d~V~iG  213 (318)
T 1vhn_A          208 DGLLVA  213 (318)
T ss_dssp             SEEEES
T ss_pred             CEEEEC
Confidence            999999

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=86.92  E-value=3.9  Score=32.42  Aligned_cols=88  Identities=15%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             HHHHHHHHHcCCCEEEecCCC-CCCCCCC-----CHHHHHHHHhhCCCcEEEEEccCCCCCcccC-HHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAAL-SEGGLTP-----TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS-QAEKEIMALDCHQF   91 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l-~~GGlTP-----S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys-~~E~~~M~~dI~~~   91 (146)
                      .+.+....+.+.+.+ +|-.+ ..+|.+.     ....++.+++..++||.|        +|-.+ .       +++..+
T Consensus       160 ~~~i~~i~~~~~g~v-~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~v--------ggGI~t~-------e~~~~~  223 (268)
T 1qop_A          160 DDLLRQVASYGRGYT-YLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQ--------GFGISSP-------EQVSAA  223 (268)
T ss_dssp             HHHHHHHHHHCCSCE-EEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEE--------ESSCCSH-------HHHHHH
T ss_pred             HHHHHHHHhhCCCcE-EEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEE--------ECCCCCH-------HHHHHH
Confidence            455555555555566 44333 3445432     368999999988899766        23333 3       355666


Q ss_pred             HHcCCCEEEEeee-----cCC-C--CcCHHHHHHHHHHh
Q psy7930          92 VESGADGFVIGAL-----TGE-Q--EIDIEFIRQLKTII  122 (146)
Q Consensus        92 ~~~GadG~VfG~L-----~~d-g--~iD~~~~~~Li~~a  122 (146)
                      ...||||+|+|=-     .++ +  ..+.+.++++++..
T Consensus       224 ~~agAD~vVVGSai~~~~~~~~~~~~~~~~~~~~~~~~l  262 (268)
T 1qop_A          224 VRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAM  262 (268)
T ss_dssp             HHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEChHHhhhHhhcccCchHHHHHHHHHHHHH
Confidence            7889999999931     111 1  34556777777654

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=86.80  E-value=1.5  Score=37.25  Aligned_cols=66  Identities=18%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      .+-+..+.++|+|-|++-.+-   |.++ -...++.+++.. ++||.+  .      -+-|.       ++.+.+.++|+
T Consensus       102 ~e~~~~a~~aGvdvI~id~a~---G~~~~~~e~I~~ir~~~~~~~Vi~--G------~V~T~-------e~A~~a~~aGa  163 (361)
T 3r2g_A          102 LQRAEALRDAGADFFCVDVAH---AHAKYVGKTLKSLRQLLGSRCIMA--G------NVATY-------AGADYLASCGA  163 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEECSC---CSSHHHHHHHHHHHHHHTTCEEEE--E------EECSH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCEEEEeCCC---CCcHhHHHHHHHHHHhcCCCeEEE--c------CcCCH-------HHHHHHHHcCC
Confidence            567888999999999985432   3322 135777777765 677754  1      02232       35778889999


Q ss_pred             CEEEEe
Q psy7930          97 DGFVIG  102 (146)
Q Consensus        97 dG~VfG  102 (146)
                      |+|++|
T Consensus       164 D~I~Vg  169 (361)
T 3r2g_A          164 DIIKAG  169 (361)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            999997

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=86.80  E-value=1.6  Score=34.95  Aligned_cols=63  Identities=17%  Similarity=0.116  Sum_probs=37.1

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCC----CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTP----TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTP----S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +.++.+.|.+.||.-+--+ +-..|    ....++.+++..++|+.+++ | .              .++|+.+.+.|++
T Consensus        32 ~~~L~~~Gv~~IE~g~~~~-~~~~p~~~~~~e~~~~i~~~~~~~v~~l~-~-n--------------~~~i~~a~~~G~~   94 (295)
T 1ydn_A           32 INRLSDCGYARIEATSFVS-PKWVPQLADSREVMAGIRRADGVRYSVLV-P-N--------------MKGYEAAAAAHAD   94 (295)
T ss_dssp             HHHHTTTTCSEEEEEECSC-TTTCGGGTTHHHHHHHSCCCSSSEEEEEC-S-S--------------HHHHHHHHHTTCS
T ss_pred             HHHHHHcCcCEEEEccCcC-ccccccccCHHHHHHHHHhCCCCEEEEEe-C-C--------------HHHHHHHHHCCCC
Confidence            4455667999999864211 22223    44555655554467887776 6 2              3556666666766


Q ss_pred             EEEE
Q psy7930          98 GFVI  101 (146)
Q Consensus        98 G~Vf  101 (146)
                      .|-+
T Consensus        95 ~V~i   98 (295)
T 1ydn_A           95 EIAV   98 (295)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=86.45  E-value=3.6  Score=35.74  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=50.6

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      ++..+.+.|||=|||+-.+-.. ..| ..-++.+++..++|+.+-+|++ .||.|..++++.-..   ++.+.++|++-+
T Consensus        22 ~~~~~~~~g~D~vElRvD~l~~-~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~~~~yi   96 (523)
T 2o7s_A           22 ETSKAHELGADLVEIRLDWLKD-FNP-LEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDV---LRLAMELGADYI   96 (523)
T ss_dssp             HHHHHHHHTCSEEEEEGGGCSS-CCH-HHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHHHHH---HHHHHHHTCSEE
T ss_pred             HHHHhhhcCCCEEEEEEecccc-cCh-HHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHHHHH---HHHHHHhCCCEE
Confidence            3444677899999999876542 223 4567777777899999999962 467788887665433   344555677643

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=86.29  E-value=11  Score=29.70  Aligned_cols=108  Identities=18%  Similarity=0.156  Sum_probs=69.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHH----HHHhhC-CCcEEEEEccC-CCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYR----VIKRLV-LVPVFVMIRVR-AGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~----~~~~~~-~ipv~vMIRP~-R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +.+..+.+.|||=|||.-.+-..   ++...+.    .+++.. ++|+.+-+|++ -||.|..++++.-.+.+   .+.+
T Consensus        21 ~~~~~~~~~~~D~vElRvD~l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~---~~~~   94 (238)
T 1sfl_A           21 IQKINHRIDAIDVLELRIDQFEN---VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLIS---DLAN   94 (238)
T ss_dssp             HHHHHHTTTTCSEEEEECTTSTT---CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHH---HGGG
T ss_pred             HHHHHhhhcCCCEEEEEeccccc---CCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHH---HHHH
Confidence            44555667799999999876542   3454443    344445 78999999972 36778888777655533   4555


Q ss_pred             c-CCCEEEEeeecCCCCc--CHHHHHHHHHHhC--CCCeEEee-cccCCCC
Q psy7930          94 S-GADGFVIGALTGEQEI--DIEFIRQLKTIIG--DRPITFHR-AFDVVRE  138 (146)
Q Consensus        94 ~-GadG~VfG~L~~dg~i--D~~~~~~Li~~a~--~~~vtFHR-AFD~~~d  138 (146)
                      + |+|-+=+=     -..  +.+..+++++.++  +..+..+. =|+.+++
T Consensus        95 ~~~~d~iDvE-----l~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~  140 (238)
T 1sfl_A           95 INGIDMIDIE-----WQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPP  140 (238)
T ss_dssp             CTTCCEEEEE-----CCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred             hCCCCEEEEE-----ccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcC
Confidence            5 57766553     234  7788899998864  56655444 4677664

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=86.21  E-value=3.7  Score=34.27  Aligned_cols=66  Identities=12%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC-CCEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG-ADGFV  100 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G-adG~V  100 (146)
                      +..+++.|+|-|++-..-..++-.-...+++.+++.+++||.+      .|++  |.++.+       .+.+.| +|+|.
T Consensus       257 a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~------~Ggi--t~~~a~-------~~l~~g~aD~V~  321 (364)
T 1vyr_A          257 IEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG------AGAY--TAEKAE-------DLIGKGLIDAVA  321 (364)
T ss_dssp             HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE------ESSC--CHHHHH-------HHHHTTSCSEEE
T ss_pred             HHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEE------ECCc--CHHHHH-------HHHHCCCccEEE
Confidence            6778899999999975321121111467888999999999743      3556  655444       444556 99999


Q ss_pred             Ee
Q psy7930         101 IG  102 (146)
Q Consensus       101 fG  102 (146)
                      ||
T Consensus       322 ~g  323 (364)
T 1vyr_A          322 FG  323 (364)
T ss_dssp             ES
T ss_pred             EC
Confidence            98

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}

Probab=86.06  E-value=11  Score=29.84  Aligned_cols=106  Identities=13%  Similarity=-0.031  Sum_probs=66.2

Q ss_pred             HHHHHHHHc-CCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCC------CCcccCHHH-----HHHHHHH
Q psy7930          20 ASALAAVRG-GADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG------FDFVFSQAE-----KEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~-GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~------gdF~Ys~~E-----~~~M~~d   87 (146)
                      +.+..|.+. |.+-|||.-..   +..-....+++..+..++.+..+--+ ..      |++.-.+.+     ++.+++-
T Consensus        37 e~l~~aa~~~G~~~VEl~~~~---~~~~~~~~l~~~l~~~Gl~i~~~~~~-~~~~~~~~g~l~~~d~~~r~~~i~~~~~~  112 (333)
T 3ktc_A           37 DQINAAKEVGELSYVDLPYPF---TPGVTLSEVKDALKDAGLKAIGITPE-IYLQKWSRGAFTNPDPAARAAAFELMHES  112 (333)
T ss_dssp             HHHHHHHHHSSEEEEEEEESC---STTCCHHHHHHHHHHHTCEEEEEEEC-TTSGGGTTCSTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEecCCC---cchhHHHHHHHHHHHcCCeEEEEecC-cCcccccCCCCCCcCHHHHHHHHHHHHHH
Confidence            456678888 99999996221   11335777777777788887544322 11      233323333     5789999


Q ss_pred             HHHHHHcCCCEEEEeeecC----CCCcCH--------HHHHHHHHHhCCCCeEE
Q psy7930          88 CHQFVESGADGFVIGALTG----EQEIDI--------EFIRQLKTIIGDRPITF  129 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~----dg~iD~--------~~~~~Li~~a~~~~vtF  129 (146)
                      |+.++++|++.+|+-.=.+    .+..|.        +.++++.+.|++..+++
T Consensus       113 i~~A~~LGa~~vv~~~g~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l  166 (333)
T 3ktc_A          113 AGIVRELGANYVKVWPGQDGWDYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAI  166 (333)
T ss_dssp             HHHHHHHTCSEEEECCTTCEESSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEE
T ss_pred             HHHHHHhCCCEEEECCCCCCcCCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEE
Confidence            9999999999999842110    122343        34666677777655554

>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}

Probab=86.05  E-value=0.75  Score=35.42  Aligned_cols=66  Identities=24%  Similarity=0.383  Sum_probs=45.7

Q ss_pred             CCCCCC--CHHHHHHHHhhC-------CCcEEEEEccCCCCCcccC-----HHHHHHHHHHHHHHHHcCCCEEEEeeecC
Q psy7930          41 EGGLTP--TLGLYRVIKRLV-------LVPVFVMIRVRAGFDFVFS-----QAEKEIMALDCHQFVESGADGFVIGALTG  106 (146)
Q Consensus        41 ~GGlTP--S~g~i~~~~~~~-------~ipv~vMIRP~R~gdF~Ys-----~~E~~~M~~dI~~~~~~GadG~VfG~L~~  106 (146)
                      .||..|  +..+++.+.+.+       .+|..++-.| ...++ |-     ++=.+.+.+.++.+.+.|+|.+|+.|-|.
T Consensus         7 iGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCnTa   84 (226)
T 2zsk_A            7 IGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSI-NFKEF-FQNPEGWEGRKKILINAAKALERAGAELIAFAANTP   84 (226)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEEC-CTHHH-HTCTTHHHHHHHHHHHHHHHHHHHTCSEEEESSSGG
T ss_pred             ecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCC-CHHHH-HhhcCCcchHHHHHHHHHHHHHHcCCCEEEECCCcH
Confidence            388888  455555555432       4677777777 55555 33     33355577778888999999999999887


Q ss_pred             CC
Q psy7930         107 EQ  108 (146)
Q Consensus       107 dg  108 (146)
                      ..
T Consensus        85 ~~   86 (226)
T 2zsk_A           85 HL   86 (226)
T ss_dssp             GG
T ss_pred             HH
Confidence            53

>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*

Probab=86.04  E-value=1.5  Score=39.09  Aligned_cols=75  Identities=20%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             CCCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCC
Q psy7930          58 VLVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        58 ~~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      ..+||+||.=-   ...+.|    ..-+.|..+++.+|++|+|||.+    |+.-.  .++.|...-++|.+.++  |++
T Consensus        10 ~~vpv~VMlPLd~V~~~~~~----~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLK   85 (495)
T 1wdp_A           10 NYVPVYVMLPLGVVNVDNVF----EDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLT   85 (495)
T ss_dssp             TCCCEEEECCTTSBCTTSCB----CCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCE
T ss_pred             CCccEEEeeecceecCCCee----CCHHHHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCe
Confidence            47999999843   012222    24578999999999999999998    54543  57899999999999997  676


Q ss_pred             eEEeecccCC
Q psy7930         127 ITFHRAFDVV  136 (146)
Q Consensus       127 vtFHRAFD~~  136 (146)
                      +.-=+.|-+|
T Consensus        86 lq~vmSFHqC   95 (495)
T 1wdp_A           86 LQAIMSFHQC   95 (495)
T ss_dssp             EEEEEECSCB
T ss_pred             EEEEEEeeec
Confidence            6555555544

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=85.80  E-value=0.89  Score=39.80  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      +-+..+.+.||++|=||+  ..|++||.  ..+++.+++.+++||.+---- ..|        +.  ..-...+.++||+
T Consensus       162 ~~a~~l~~~Gad~I~l~D--T~G~~~P~~v~~lv~~l~~~~~~~i~~H~Hn-d~G--------lA--vAN~laAv~AGa~  228 (464)
T 2nx9_A          162 DVAQQLAELGVDSIALKD--MAGILTPYAAEELVSTLKKQVDVELHLHCHS-TAG--------LA--DMTLLKAIEAGVD  228 (464)
T ss_dssp             HHHHHHHHTTCSEEEEEE--TTSCCCHHHHHHHHHHHHHHCCSCEEEEECC-TTS--------CH--HHHHHHHHHTTCS
T ss_pred             HHHHHHHHCCCCEEEEcC--CCCCcCHHHHHHHHHHHHHhcCCeEEEEECC-CCC--------hH--HHHHHHHHHhCCC
Confidence            346678889999999998  47999995  678999998888888776554 333        12  2445566778998


Q ss_pred             EEEEeeecC----CCCcCHHHHH
Q psy7930          98 GFVIGALTG----EQEIDIEFIR  116 (146)
Q Consensus        98 G~VfG~L~~----dg~iD~~~~~  116 (146)
                      -| =|.+++    -|+.+++.+-
T Consensus       229 ~V-D~ti~g~gertGN~~lE~lv  250 (464)
T 2nx9_A          229 RV-DTAISSMSGTYGHPATESLV  250 (464)
T ss_dssp             EE-EEBCGGGCSTTSCCBHHHHH
T ss_pred             EE-EEeccccCCCCcCHHHHHHH
Confidence            44 333332    3455555443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=85.57  E-value=4.5  Score=32.74  Aligned_cols=71  Identities=13%  Similarity=0.187  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCC----CC-HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLT----PT-LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlT----PS-~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +.+.+....+.+-+-|=+.+....-|.+    |. ..+++.+++..++||.|        +|--+..      ++++...
T Consensus       160 ~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~v--------GfGI~~~------e~~~~~~  225 (267)
T 3vnd_A          160 DADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLL--------GFGIAEP------EQVRAAI  225 (267)
T ss_dssp             CHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEE--------CSSCCSH------HHHHHHH
T ss_pred             CHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEE--------ECCcCCH------HHHHHHH
Confidence            3566777777777778777766433332    22 57888888888889876        2444321      3455567


Q ss_pred             HcCCCEEEEe
Q psy7930          93 ESGADGFVIG  102 (146)
Q Consensus        93 ~~GadG~VfG  102 (146)
                      +.||||+|+|
T Consensus       226 ~~gADgvVVG  235 (267)
T 3vnd_A          226 KAGAAGAISG  235 (267)
T ss_dssp             HTTCSEEEEC
T ss_pred             HcCCCEEEEC
Confidence            7899999999

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*

Probab=85.46  E-value=0.47  Score=42.98  Aligned_cols=59  Identities=19%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee------ecCCCCcCHHHHHHHHHHhC--CCCeEE
Q psy7930          71 GFDFVFSQAEKEIMALDCHQFVESGADGFVIGA------LTGEQEIDIEFIRQLKTIIG--DRPITF  129 (146)
Q Consensus        71 ~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~------L~~dg~iD~~~~~~Li~~a~--~~~vtF  129 (146)
                      |++|......-+.+++||+.+|++|.+.|-+++      -...|..|.+.+.++++.|+  |+.+.+
T Consensus        12 G~~y~pe~w~~~~~~~Dl~~mk~~G~n~vr~~if~W~~~eP~~g~~~f~~ld~~i~~~~~~Gi~vil   78 (675)
T 3tty_A           12 GGDYNPEQWDKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFTWLDDIIERLTKENIYLCL   78 (675)
T ss_dssp             EEECCGGGSCHHHHHHHHHHHHHHTCCEEEECSSCHHHHBSSSSCBCCHHHHHHHHHHHHTTCEEEE
T ss_pred             eeeCChhhCCHHHHHHHHHHHHHcCCCEEEEeeechhhhCCcCCccCHHHHHHHHHHHHHCCCEEEE
Confidence            444433333567899999999999999999997      34568999999999999997  777654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=85.45  E-value=3.8  Score=34.89  Aligned_cols=75  Identities=15%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCC--------CCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSE--------GGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~--------GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .+.+.+++..+.+.|||-|-+-..-..        |=-.|....++++.+   ..++||.+     -|| ....      
T Consensus       281 ~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia-----~GG-i~~~------  348 (491)
T 1zfj_A          281 NIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIA-----DGG-IKYS------  348 (491)
T ss_dssp             EECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEE-----ESC-CCSH------
T ss_pred             CccCHHHHHHHHHcCCCEEEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEe-----eCC-CCCH------
Confidence            456889999999999999977321000        001566677777665   35677642     244 3322      


Q ss_pred             HHHHHHHHHHcCCCEEEEee
Q psy7930          84 MALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~  103 (146)
                        .|+..+.++||+++++|=
T Consensus       349 --~di~kal~~GA~~v~vG~  366 (491)
T 1zfj_A          349 --GDIVKALAAGGNAVMLGS  366 (491)
T ss_dssp             --HHHHHHHHTTCSEEEEST
T ss_pred             --HHHHHHHHcCCcceeeCH
Confidence              677888899999999974

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=85.42  E-value=0.93  Score=36.17  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=54.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC----HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT----LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +++..+.++|||.+++=- + .|...|.    ...++.+++.++..+|.||.. .              ..-++.+.++|
T Consensus        30 ~~i~~~~~~gad~lhvDv-m-DG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~~-p--------------~~~i~~~~~aG   92 (237)
T 3cu2_A           30 EEVTTLLENQINVLHFDI-A-DGQFSSLFTVGAIGIKYFPTHCFKDVHLMVRN-Q--------------LEVAKAVVANG   92 (237)
T ss_dssp             HHHHHHHHTTCCEEEEEE-E-BSSSSSCBCBCTHHHHTSCTTSEEEEEEECSC-H--------------HHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCEEEEEE-e-cCccccchhhhHHHHHHHhhhCCCCeEEEEEC-H--------------HHHHHHHHHcC
Confidence            456677889999987643 2 3665554    357777777665589999887 3              34577888999


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIGDR  125 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~  125 (146)
                      ||++.|=+-..+   +   ..++++.+++.
T Consensus        93 Ad~itvH~ea~~---~---~~~~i~~i~~~  116 (237)
T 3cu2_A           93 ANLVTLQLEQYH---D---FALTIEWLAKQ  116 (237)
T ss_dssp             CSEEEEETTCTT---S---HHHHHHHHTTC
T ss_pred             CCEEEEecCCcc---c---HHHHHHHHHhc
Confidence            999877544432   2   34455555443

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=85.35  E-value=1.6  Score=38.12  Aligned_cols=94  Identities=18%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      ..=|||.|.+++..|.+.||+=|=.+.. ...+++|...+...+.+.+.-.+. .|--  +|  .+|+       +|++.
T Consensus       159 ~~LvEvh~~eE~~~A~~lga~iIGinnr-~L~t~~~dl~~~~~L~~~ip~~~~-vIaE--sG--I~t~-------edv~~  225 (452)
T 1pii_A          159 GVLTEVSNEEEQERAIALGAKVVGINNR-DLRDLSIDLNRTRELAPKLGHNVT-VISE--SG--INTY-------AQVRE  225 (452)
T ss_dssp             EEEEEECSHHHHHHHHHTTCSEEEEESE-ETTTTEECTHHHHHHHHHHCTTSE-EEEE--SC--CCCH-------HHHHH
T ss_pred             eEEEEeCCHHHHHHHHHCCCCEEEEeCC-CCCCCCCCHHHHHHHHHhCCCCCe-EEEE--CC--CCCH-------HHHHH
Confidence            3446789999999999999998877642 346689999988888776532221 2222  44  3444       56778


Q ss_pred             HHHcCCCEEEEe-eecCCCCcCHHHHHHHH
Q psy7930          91 FVESGADGFVIG-ALTGEQEIDIEFIRQLK  119 (146)
Q Consensus        91 ~~~~GadG~VfG-~L~~dg~iD~~~~~~Li  119 (146)
                      ++++ ++||++| .|..... -..++++|+
T Consensus       226 ~~~~-a~avLVGealmr~~d-~~~~~~~l~  253 (452)
T 1pii_A          226 LSHF-ANGFLIGSALMAHDD-LHAAVRRVL  253 (452)
T ss_dssp             HTTT-CSEEEECHHHHTCSC-HHHHHHHHH
T ss_pred             HHHh-CCEEEEcHHHcCCcC-HHHHHHHHH
Confidence            8899 9999999 3444332 234556665

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=85.34  E-value=9.7  Score=30.56  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             CHHHHHHHH----HcCCCEEEecCCCCCCCCC-C-------CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          18 SVASALAAV----RGGADRLELCAALSEGGLT-P-------TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        18 s~~~a~~A~----~~GAdRIELc~~l~~GGlT-P-------S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +++++..|.    ..|...+-||-.   ||.| |       ....+...++..++|  ||+=|.++++.-.=   +..| 
T Consensus       142 t~~e~~~Av~~i~~~Gn~~i~L~~R---G~~~~~~y~~~~v~L~ai~~lk~~~~~p--Vi~d~sH~~g~~~~---v~~~-  212 (262)
T 1zco_A          142 TIQELLYSAEYIMAQGNENVILCER---GIRTFETATRFTLDISAVPVVKELSHLP--IIVDPSHPAGRRSL---VIPL-  212 (262)
T ss_dssp             CHHHHHHHHHHHHTTTCCCEEEEEC---CBCCSCCSSSSBCCTTHHHHHHHHBSSC--EEECSSTTTCSGGG---HHHH-
T ss_pred             CHHHHHHHHHHHHHCCCCeEEEEEC---CCCCCCCcChhhcCHHHHHHHHhhhCCC--EEEEcCCCCCccch---HHHH-
Confidence            677777666    468889999863   4333 2       345677777777889  57777565442210   1111 


Q ss_pred             HHHHHHHHcCCCEEEEeee--------cCCCCcCHHHHHHHHHHhC
Q psy7930          86 LDCHQFVESGADGFVIGAL--------TGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L--------~~dg~iD~~~~~~Li~~a~  123 (146)
                        ...+..+||+|+++=.=        +...+++.+.+++|++..+
T Consensus       213 --~~aAva~Ga~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~  256 (262)
T 1zco_A          213 --AKAAYAIGADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELE  256 (262)
T ss_dssp             --HHHHHHTTCSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHH
T ss_pred             --HHHHHHcCCCEEEEEecCCccccCChhhcCCCHHHHHHHHHHHH
Confidence              33467899999999753        2234799999999998765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=85.27  E-value=0.7  Score=40.99  Aligned_cols=77  Identities=19%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC-----CHHHHHHHHhhC--CCcEEEEEccCCCCCc-
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP-----TLGLYRVIKRLV--LVPVFVMIRVRAGFDF-   74 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP-----S~g~i~~~~~~~--~ipv~vMIRP~R~gdF-   74 (146)
                      +.|..|+++|.|-|||..+-                 .-||---     ....++.+++.+  ++||.+=|+| -  +| 
T Consensus       145 ~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~-~--~~~  221 (671)
T 1ps9_A          145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM-L--DLV  221 (671)
T ss_dssp             HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEE-E--CCS
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECc-c--ccC
Confidence            67888999999999996420                 1133211     155777788877  6777777777 3  22 


Q ss_pred             --ccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          75 --VFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        75 --~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                        -++.+|..   +=++.+.+.|+|.+.++
T Consensus       222 ~~g~~~~~~~---~~a~~l~~~g~d~i~v~  248 (671)
T 1ps9_A          222 EDGGTFAETV---ELAQAIEAAGATIINTG  248 (671)
T ss_dssp             TTCCCHHHHH---HHHHHHHHHTCSEEEEE
T ss_pred             CCCCCHHHHH---HHHHHHHhcCCCEEEcC
Confidence              24555443   44667788999999875

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=85.24  E-value=4.6  Score=33.23  Aligned_cols=67  Identities=22%  Similarity=0.271  Sum_probs=47.8

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ++.+.+.+++|||=|=+=      |+ |+...++++.+.+++|+.+-+-. -+..-.++.          +.+.++|++.
T Consensus       170 i~ra~ay~eAGAd~i~~e------~~-~~~~~~~~i~~~~~iP~~~N~~~-~g~~p~~~~----------~eL~~~G~~~  231 (295)
T 1xg4_A          170 IERAQAYVEAGAEMLFPE------AI-TELAMYRQFADAVQVPILANITE-FGATPLFTT----------DELRSAHVAM  231 (295)
T ss_dssp             HHHHHHHHHTTCSEEEET------TC-CSHHHHHHHHHHHCSCBEEECCS-SSSSCCCCH----------HHHHHTTCSE
T ss_pred             HHHHHHHHHcCCCEEEEe------CC-CCHHHHHHHHHHcCCCEEEEecc-cCCCCCCCH----------HHHHHcCCCE
Confidence            467888999999987652      33 89999999999999998543322 111223343          5677889999


Q ss_pred             EEEee
Q psy7930          99 FVIGA  103 (146)
Q Consensus        99 ~VfG~  103 (146)
                      +.+|.
T Consensus       232 v~~~~  236 (295)
T 1xg4_A          232 ALYPL  236 (295)
T ss_dssp             EEESS
T ss_pred             EEECh
Confidence            99985

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=85.18  E-value=3  Score=35.11  Aligned_cols=79  Identities=15%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCC------CHHHHHHHHhhCCC-cEEEEEccCCCCCcc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTP------TLGLYRVIKRLVLV-PVFVMIRVRAGFDFV   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTP------S~g~i~~~~~~~~i-pv~vMIRP~R~gdF~   75 (146)
                      +.|..|.++|.|-|||..+-                 .-||- .      ...+++.+++.++- ||.|=|+|   .++.
T Consensus       171 ~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eiv~aVr~avg~~~V~vrls~---~~~~  246 (376)
T 1icp_A          171 VAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGS-LENRCRFALEIVEAVANEIGSDRVGIRISP---FAHY  246 (376)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHHCGGGEEEEECT---TCCT
T ss_pred             HHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCcc-HHHhHHHHHHHHHHHHHHhcCCceEEEecc---cccc
Confidence            56788999999999997531                 11332 1      24567777777743 77665555   3331


Q ss_pred             ---cCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          76 ---FSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        76 ---Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                         -.....+...+=++.+.+.|+|.+.+-
T Consensus       247 ~g~~~~~~~~~~~~la~~le~~Gvd~i~v~  276 (376)
T 1icp_A          247 NEAGDTNPTALGLYMVESLNKYDLAYCHVV  276 (376)
T ss_dssp             TTCCCSCHHHHHHHHHHHHGGGCCSEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence               012234445556778888999998773

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=85.14  E-value=4  Score=33.77  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCC---CCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          20 ASALAAVRGGADRLELCAALSEGG---LTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GG---lTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +=+...++.|+|-|++-+.-...-   ..|  ...+++.+++.+++||.+      .|++ +|.++       ++.+.+.
T Consensus       233 ~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~------~GgI-~s~e~-------a~~~L~~  298 (340)
T 3gr7_A          233 PYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGA------VGLI-TSGWQ-------AEEILQN  298 (340)
T ss_dssp             HHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEE------ESSC-CCHHH-------HHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEe------eCCC-CCHHH-------HHHHHHC
Confidence            346667788999999964211110   012  467888999999999754      2333 34443       4455567


Q ss_pred             C-CCEEEEe
Q psy7930          95 G-ADGFVIG  102 (146)
Q Consensus        95 G-adG~VfG  102 (146)
                      | +|.|.||
T Consensus       299 G~aD~V~iG  307 (340)
T 3gr7_A          299 GRADLVFLG  307 (340)
T ss_dssp             TSCSEEEEC
T ss_pred             CCeeEEEec
Confidence            7 9999999

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=85.12  E-value=10  Score=31.21  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCCEEEecCCC--------CCCCCCCCHHHHHHHHh---hC-CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAAL--------SEGGLTPTLGLYRVIKR---LV-LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l--------~~GGlTPS~g~i~~~~~---~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +.+...+++||.=|-|-+..        .-..|+|--..+..++.   .. +.+..|+-|-   ..+.  ...++...++
T Consensus        98 ~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRt---da~~--~~gl~~ai~r  172 (295)
T 1xg4_A           98 RTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMART---DALA--VEGLDAAIER  172 (295)
T ss_dssp             HHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE---CCHH--HHCHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEec---HHhh--hcCHHHHHHH
Confidence            34555677899998886543        22238887666555443   32 5677777776   2222  4457889999


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930          88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHR  131 (146)
                      .+.+.++|||++++=.++     |.+..+++.+..+ .|+.+..
T Consensus       173 a~ay~eAGAd~i~~e~~~-----~~~~~~~i~~~~~-iP~~~N~  210 (295)
T 1xg4_A          173 AQAYVEAGAEMLFPEAIT-----ELAMYRQFADAVQ-VPILANI  210 (295)
T ss_dssp             HHHHHHTTCSEEEETTCC-----SHHHHHHHHHHHC-SCBEEEC
T ss_pred             HHHHHHcCCCEEEEeCCC-----CHHHHHHHHHHcC-CCEEEEe
Confidence            999999999999985543     7788888888775 5655444

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=85.11  E-value=3.6  Score=34.21  Aligned_cols=65  Identities=20%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +.+++..|.+=+=|-.    ++......+++++++.+  ++||.+-     ||  .-|.       +|++.+.++|||+|
T Consensus       192 a~~gad~G~~lV~LD~----~~~~v~~e~V~~I~~~~~~~iPV~vG-----GG--Irs~-------Eda~~ll~aGAD~V  253 (286)
T 3vk5_A          192 LHVARAFGFHMVYLYS----RNEHVPPEVVRHFRKGLGPDQVLFVS-----GN--VRSG-------RQVTEYLDSGADYV  253 (286)
T ss_dssp             HHHHHHTTCSEEEEEC----SSSCCCHHHHHHHHHHSCTTCEEEEE-----SS--CCSH-------HHHHHHHHTTCSEE
T ss_pred             HHHHHHcCCCEEEEcC----CCCcCCHHHHHHHHHhcCCCCCEEEE-----eC--CCCH-------HHHHHHHHcCCCEE
Confidence            3444556666665553    34444679999999999  8998763     22  2222       56777888999999


Q ss_pred             EEeee
Q psy7930         100 VIGAL  104 (146)
Q Consensus       100 VfG~L  104 (146)
                      |+|=.
T Consensus       254 VVGSA  258 (286)
T 3vk5_A          254 GFAGA  258 (286)
T ss_dssp             EESGG
T ss_pred             EECch
Confidence            99953

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=85.00  E-value=3.5  Score=36.63  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=62.4

Q ss_pred             cceeEEEecCHHHHHHHHHcC---CCEEEecCCCCC---CCCC-CC--HHHHHHHHhh------CCCcEEEEEccCCCCC
Q psy7930           9 KTTLEVCVDSVASALAAVRGG---ADRLELCAALSE---GGLT-PT--LGLYRVIKRL------VLVPVFVMIRVRAGFD   73 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~G---AdRIELc~~l~~---GGlT-PS--~g~i~~~~~~------~~ipv~vMIRP~R~gd   73 (146)
                      ..++=+-+.|++++..|.+.|   ||-|=+-.-...   -+.. |.  ...++++++.      .++||+++     ||=
T Consensus       108 ~~iiG~S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAI-----GGI  182 (540)
T 3nl6_A          108 DMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGI-----GGL  182 (540)
T ss_dssp             TSEEEEEECSHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEE-----SSC
T ss_pred             CCEEEEECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEE-----cCC
Confidence            457888999999999999999   999988332211   1221 22  4456666654      47898775     331


Q ss_pred             cccCHHHHHHHHHHHHHHHH--------cCCCEEEEe-eecCCCCcCHHHHHHHHHHhCC
Q psy7930          74 FVFSQAEKEIMALDCHQFVE--------SGADGFVIG-ALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~--------~GadG~VfG-~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                         +.       +++..+.+        .|+|||+++ ++..... -..+.++|.+....
T Consensus       183 ---~~-------~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~d-p~~a~~~l~~~~~~  231 (540)
T 3nl6_A          183 ---HP-------DNIERVLYQCVSSNGKRSLDGICVVSDIIASLD-AAKSTKILRGLIDK  231 (540)
T ss_dssp             ---CT-------TTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTT-HHHHHHHHHHHHHC
T ss_pred             ---CH-------HHHHHHHHhhcccccccCceEEEEeHHHhcCCC-HHHHHHHHHHHHHh
Confidence               11       34566665        799999876 4543322 24456677666554

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=84.92  E-value=2.5  Score=32.72  Aligned_cols=79  Identities=19%  Similarity=0.268  Sum_probs=44.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCC-CC---CCCCH----HHHHHHHhhC-CCcEEEEEccCCCCCcccCHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSE-GG---LTPTL----GLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~-GG---lTPS~----g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +..=+|+.+.++...+.+.|++-|=....-.. -|   .|++.    ...+.+++.. ++||.+      +|+-. ++  
T Consensus       112 l~~iv~v~~~~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~------ggGI~-~~--  182 (219)
T 2h6r_A          112 LETIVCTNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLC------GAGIS-KG--  182 (219)
T ss_dssp             CEEEEEESSSHHHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEE------CSSCC-SH--
T ss_pred             CeEEEEeCCchHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEE------EeCcC-cH--
Confidence            34456888888888888889887777663322 24   44433    2334444433 455432      33222 22  


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe
Q psy7930          81 KEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG  102 (146)
                           ++++.+++.|+|||++|
T Consensus       183 -----~~~~~~~~~gaDgvlVG  199 (219)
T 2h6r_A          183 -----EDVKAALDLGAEGVLLA  199 (219)
T ss_dssp             -----HHHHHHHTTTCCCEEES
T ss_pred             -----HHHHHHhhCCCCEEEEc
Confidence                 46667889999999999

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=84.91  E-value=11  Score=33.04  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=41.2

Q ss_pred             CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeee---c-CCCCcCHHHHHHHHHHh
Q psy7930          47 TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGAL---T-GEQEIDIEFIRQLKTII  122 (146)
Q Consensus        47 S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L---~-~dg~iD~~~~~~Li~~a  122 (146)
                      +...++.+++..++||.|=.-+        +       .+|.+.+.++|+|+|+++--   . +.+.-+.+.+.++.++.
T Consensus       331 ~~~~i~~lr~~~~~PvivKgv~--------~-------~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v  395 (511)
T 1kbi_A          331 TWKDIEELKKKTKLPIVIKGVQ--------R-------TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPIL  395 (511)
T ss_dssp             CHHHHHHHHHHCSSCEEEEEEC--------S-------HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcEEEEeCC--------C-------HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHH
Confidence            4778899999889998653212        1       36688899999999999421   0 11223466777777766

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=84.81  E-value=1.9  Score=34.52  Aligned_cols=87  Identities=11%  Similarity=0.124  Sum_probs=58.9

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +.|++++.+|.+.|||-|-+=-    .+..+....++.++..+ ++|+  |  | -|| -  |.       +.+..+.++
T Consensus       134 v~TptEi~~A~~~Gad~vK~FP----a~~~gG~~~lkal~~p~p~ip~--~--p-tGG-I--~~-------~n~~~~l~a  194 (232)
T 4e38_A          134 VNNPSTVEAALEMGLTTLKFFP----AEASGGISMVKSLVGPYGDIRL--M--P-TGG-I--TP-------SNIDNYLAI  194 (232)
T ss_dssp             ECSHHHHHHHHHTTCCEEEECS----TTTTTHHHHHHHHHTTCTTCEE--E--E-BSS-C--CT-------TTHHHHHTS
T ss_pred             CCCHHHHHHHHHcCCCEEEECc----CccccCHHHHHHHHHHhcCCCe--e--e-EcC-C--CH-------HHHHHHHHC
Confidence            4599999999999999998732    22223457888887765 4554  3  7 677 2  22       467888999


Q ss_pred             CCCEEEEee-ecCCC---CcCHHHHHHHHHH
Q psy7930          95 GADGFVIGA-LTGEQ---EIDIEFIRQLKTI  121 (146)
Q Consensus        95 GadG~VfG~-L~~dg---~iD~~~~~~Li~~  121 (146)
                      |+.++|.|- |++..   .=|.+.++++.+.
T Consensus       195 Ga~~~vgGs~l~~~~~i~~~~~~~i~~~a~~  225 (232)
T 4e38_A          195 PQVLACGGTWMVDKKLVTNGEWDEIARLTRE  225 (232)
T ss_dssp             TTBCCEEECGGGCHHHHHTTCHHHHHHHHHH
T ss_pred             CCeEEEECchhcChHHhhcCCHHHHHHHHHH
Confidence            999999985 55421   1256666655443

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=84.78  E-value=9.6  Score=33.10  Aligned_cols=114  Identities=15%  Similarity=0.001  Sum_probs=74.4

Q ss_pred             eeEEEecCHHHHHHHHHcCCC-----EEEecCCC-C-CCCCCCC-----HHHHHHHHhhCCCcE--EEEEccCCCCCccc
Q psy7930          11 TLEVCVDSVASALAAVRGGAD-----RLELCAAL-S-EGGLTPT-----LGLYRVIKRLVLVPV--FVMIRVRAGFDFVF   76 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAd-----RIELc~~l-~-~GGlTPS-----~g~i~~~~~~~~ipv--~vMIRP~R~gdF~Y   76 (146)
                      +.=+|+.|++.+.++.++...     =||...+- . .||.|+-     ..+++.+.+..++|+  .++=.= ++|+|.+
T Consensus        16 v~afn~~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlD-Hg~~~~w   94 (420)
T 2fiq_A           16 ICSVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGD-HLGPNCW   94 (420)
T ss_dssp             EEEECCCCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEE-EESSGGG
T ss_pred             EEEeccCCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECC-CCCCccc
Confidence            456888999888887766432     35655432 2 3788852     344444555678994  444444 6999966


Q ss_pred             ----CHHHHHHHHHHHHHHHHcCCCEEEEeeec----CCCCcCH----HHHHHHHHHhCCC
Q psy7930          77 ----SQAEKEIMALDCHQFVESGADGFVIGALT----GEQEIDI----EFIRQLKTIIGDR  125 (146)
Q Consensus        77 ----s~~E~~~M~~dI~~~~~~GadG~VfG~L~----~dg~iD~----~~~~~Li~~a~~~  125 (146)
                          .+++++.-++.|..+.++|-..|-|=+=.    ++-.++.    .++++|++.|+..
T Consensus        95 ~~~~~~~am~~a~e~i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~  155 (420)
T 2fiq_A           95 QQENVDAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESV  155 (420)
T ss_dssp             TTSBHHHHHHHHHHHHHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence                46667777799999999999999885543    1111333    3378899988754

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=84.76  E-value=19  Score=32.08  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      -.++..|.++|++.|-+...++.     . .-++.+.+   ..+..+.+-|-+  ..+..|+.+.+..+.   +.+.++|
T Consensus       120 ~~~ve~a~~aGvd~vrIf~s~sd-----~-~ni~~~i~~ak~~G~~v~~~i~~--~~~~~~~~e~~~~~a---~~l~~~G  188 (539)
T 1rqb_A          120 DRFVDKSAENGMDVFRVFDAMND-----P-RNMAHAMAAVKKAGKHAQGTICY--TISPVHTVEGYVKLA---GQLLDMG  188 (539)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCC-----T-HHHHHHHHHHHHTTCEEEEEEEC--CCSTTCCHHHHHHHH---HHHHHTT
T ss_pred             HHHHHHHHhCCCCEEEEEEehhH-----H-HHHHHHHHHHHHCCCeEEEEEEe--eeCCCCCHHHHHHHH---HHHHHcC
Confidence            34578899999999999865433     2 22333322   246677667766  445778766655554   5566789


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHh----C-CCCeEEe
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTII----G-DRPITFH  130 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a----~-~~~vtFH  130 (146)
                      ++-|.+.  +--|-.......+|+++.    . +.++-||
T Consensus       189 ad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H  226 (539)
T 1rqb_A          189 ADSIALK--DMAALLKPQPAYDIIKAIKDTYGQKTQINLH  226 (539)
T ss_dssp             CSEEEEE--ETTCCCCHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCEEEeC--CCCCCcCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            9977664  556667777777776654    3 5788888

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=84.76  E-value=15  Score=30.22  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=69.6

Q ss_pred             HHHHHHHHcCCCEEEecCC--------CCCCCCCCCHHHHHHHH---hhC-CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAA--------LSEGGLTPTLGLYRVIK---RLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------l~~GGlTPS~g~i~~~~---~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +.+...++.||.-|-|=+.        +.-..+.|.-..+..++   +.. +.+..++-|-   -.|  ....++.-.+.
T Consensus       102 ~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ART---Da~--~~~gldeai~R  176 (298)
T 3eoo_A          102 RTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMART---DAA--AAEGIDAAIER  176 (298)
T ss_dssp             HHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE---CTH--HHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEee---hhh--hhcCHHHHHHH
Confidence            3455567789998877553        33334777765555554   332 5678888776   223  34568888888


Q ss_pred             HHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930          88 CHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        88 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHR  131 (146)
                      .+.+.++|||++.+=.++     |.+.++++.+..+ .|+....
T Consensus       177 a~ay~~AGAD~if~~~~~-----~~ee~~~~~~~~~-~Pl~~n~  214 (298)
T 3eoo_A          177 AIAYVEAGADMIFPEAMK-----TLDDYRRFKEAVK-VPILANL  214 (298)
T ss_dssp             HHHHHHTTCSEEEECCCC-----SHHHHHHHHHHHC-SCBEEEC
T ss_pred             HHhhHhcCCCEEEeCCCC-----CHHHHHHHHHHcC-CCeEEEe
Confidence            999999999999886553     7888999998875 6664443

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=84.70  E-value=3.7  Score=34.54  Aligned_cols=79  Identities=16%  Similarity=0.077  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCCC------HHHHHHHHhhCCC-cEEEEEccCCCCCcc
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTPT------LGLYRVIKRLVLV-PVFVMIRVRAGFDFV   75 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTPS------~g~i~~~~~~~~i-pv~vMIRP~R~gdF~   75 (146)
                      +.|..|.++|.|-|||..+-                 .-|| +.-      ..+++.+++.++- ||-|=|+|   .++.
T Consensus       157 ~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGG-slenR~rf~~eiv~aVr~~vg~~~v~vRls~---~~~~  232 (362)
T 4ab4_A          157 SGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGG-SLENRARLLLEVTDAAIEVWGAQRVGVHLAP---RADA  232 (362)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHHCGGGEEEEECT---TCCS
T ss_pred             HHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCC-chhhHHHHHHHHHHHHHHhcCCCceEEEeec---cccc
Confidence            56788999999999998641                 1144 221      3477777777643 76555555   3321


Q ss_pred             --c-CHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          76 --F-SQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        76 --Y-s~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                        . ..+..+...+=++.+.++|+|-+-+-
T Consensus       233 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~  262 (362)
T 4ab4_A          233 HDMGDADRAETFTYVARELGKRGIAFICSR  262 (362)
T ss_dssp             SSCCCTTHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cccCCCCcHHHHHHHHHHHHHhCCCEEEEC
Confidence              0 11223444555677788999988653

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A

Probab=84.65  E-value=5.7  Score=31.66  Aligned_cols=89  Identities=18%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +-+.+++.+..|...|+|-|=|-  ++. +. +....+....... .-+..++||. -+++           ..||+.+.
T Consensus        24 ~~~~~p~~~e~a~~~GaD~v~lD--lE~-~~-~~~~~~~~~~~a~~~~~~~~~VRv-~~~~-----------~~~i~~~l   87 (267)
T 2vws_A           24 LSSTTAYMAEIAATSGYDWLLID--GEH-AP-NTIQDLYHQLQAVAPYASQPVIRP-VEGS-----------KPLIKQVL   87 (267)
T ss_dssp             ECSCCHHHHHHHHTTCCSEEEEE--TTT-SC-CCHHHHHHHHHHHTTSSSEEEEEC-SSCC-----------HHHHHHHH
T ss_pred             EeCCCHHHHHHHHhCCCCEEEEc--CCC-CC-CCHHHHHHHHHHHHhCCCcEEEEe-CCCC-----------HHHHHHHH
Confidence            34569999999999999987664  333 33 2344444444332 2366789998 5554           25778888


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +.|++||++=..+.     .+..+++++.++
T Consensus        88 ~~g~~~I~~P~V~s-----~ee~~~~~~~~~  113 (267)
T 2vws_A           88 DIGAQTLLIPMVDT-----AEQARQVVSATR  113 (267)
T ss_dssp             HTTCCEEEECCCCS-----HHHHHHHHHHTS
T ss_pred             HhCCCEEEeCCCCC-----HHHHHHHHHHHc
Confidence            99999998866542     334667777764

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=84.48  E-value=12  Score=31.12  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=69.6

Q ss_pred             HHHHHHHHcCCCEEEecCCC--------CCCCCCCCHHHHHHHH---hh---CCCcEEEEEccCCCCCcccCHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAAL--------SEGGLTPTLGLYRVIK---RL---VLVPVFVMIRVRAGFDFVFSQAEKEIMA   85 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l--------~~GGlTPS~g~i~~~~---~~---~~ipv~vMIRP~R~gdF~Ys~~E~~~M~   85 (146)
                      +.+...++.||.-|-|=+..        .-..+.|.-..+..++   +.   .+.+..++-|-  . .|.  ...++.-.
T Consensus       107 ~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ART--D-a~~--~~gldeAi  181 (307)
T 3lye_A          107 RTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIART--D-ALQ--SLGYEECI  181 (307)
T ss_dssp             HHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEE--C-CHH--HHCHHHHH
T ss_pred             HHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEec--h-hhh--ccCHHHHH
Confidence            34556678899998876543        2223667655555443   32   36788888887  2 232  34578888


Q ss_pred             HHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEee
Q psy7930          86 LDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR  131 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHR  131 (146)
                      +..+.+.++|||++.+=.+     -|.+.++++.+...+.|+....
T Consensus       182 ~Ra~ay~eAGAD~ifi~~~-----~~~~~~~~i~~~~~~~Pv~~n~  222 (307)
T 3lye_A          182 ERLRAARDEGADVGLLEGF-----RSKEQAAAAVAALAPWPLLLNS  222 (307)
T ss_dssp             HHHHHHHHTTCSEEEECCC-----SCHHHHHHHHHHHTTSCBEEEE
T ss_pred             HHHHHHHHCCCCEEEecCC-----CCHHHHHHHHHHccCCceeEEe
Confidence            8899999999999987544     4778899999988777775543

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=84.36  E-value=0.96  Score=38.18  Aligned_cols=81  Identities=12%  Similarity=-0.035  Sum_probs=52.0

Q ss_pred             eeEEEecCHHHHH----HHH---HcCCCEEEecC---CCCCCCC----CC--CHHHHHHHHhhCCCcEEEEEccCCCCCc
Q psy7930          11 TLEVCVDSVASAL----AAV---RGGADRLELCA---ALSEGGL----TP--TLGLYRVIKRLVLVPVFVMIRVRAGFDF   74 (146)
Q Consensus        11 ~lEvcv~s~~~a~----~A~---~~GAdRIELc~---~l~~GGl----TP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF   74 (146)
                      ++-++..|+++-.    .++   +.|+|-|||+-   +. .||-    .|  -..+++.+++..++||.|=||| -   +
T Consensus       130 ivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~-~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p-~---~  204 (354)
T 4ef8_A          130 FLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNV-PGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPP-Y---F  204 (354)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCS-TTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECC-C---C
T ss_pred             EEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCC-CCchhhccCHHHHHHHHHHHHHhhCCCeEEEecC-C---C
Confidence            4556666666533    333   46899999984   22 2432    12  1346677777789999999999 2   2


Q ss_pred             ccCHHHHHHHHHHHHHHHHcC-CCEEEE
Q psy7930          75 VFSQAEKEIMALDCHQFVESG-ADGFVI  101 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~G-adG~Vf  101 (146)
                        +..|+..   =++.+.+.| +|||+.
T Consensus       205 --d~~~~~~---~a~~~~~~Gg~d~I~~  227 (354)
T 4ef8_A          205 --DFAHFDA---AAEILNEFPKVQFITC  227 (354)
T ss_dssp             --SHHHHHH---HHHHHHTCTTEEEEEE
T ss_pred             --CHHHHHH---HHHHHHhCCCccEEEE
Confidence              4555533   345566888 999985

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=84.21  E-value=2.5  Score=35.84  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             CHHHHHHH-HHcCCCEEEecCCCC-----CCCCCCCH----HHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          18 SVASALAA-VRGGADRLELCAALS-----EGGLTPTL----GLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        18 s~~~a~~A-~~~GAdRIELc~~l~-----~GGlTPS~----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +.+++..+ ...|||-+++--+..     ..| .+++    ..++.+++..++||.|=. .  +  |-.+.       ++
T Consensus       156 ~~e~~~~~ve~~~adal~ihln~~qe~~~p~G-d~~~~~~~~~I~~l~~~~~~PVivK~-v--g--~g~s~-------e~  222 (365)
T 3sr7_A          156 PYQAGLQAVRDLQPLFLQVHINLMQELLMPEG-EREFRSWKKHLSDYAKKLQLPFILKE-V--G--FGMDV-------KT  222 (365)
T ss_dssp             CHHHHHHHHHHHCCSCEEEEECHHHHHTSSSS-CCCCHHHHHHHHHHHHHCCSCEEEEE-C--S--SCCCH-------HH
T ss_pred             CHHHHHHHHHhcCCCEEEEeccccccccCCCC-CCcHHHHHHHHHHHHHhhCCCEEEEE-C--C--CCCCH-------HH
Confidence            45555554 478999999887642     122 2334    678888888899986653 3  1  33444       46


Q ss_pred             HHHHHHcCCCEEEEe
Q psy7930          88 CHQFVESGADGFVIG  102 (146)
Q Consensus        88 I~~~~~~GadG~VfG  102 (146)
                      ++.+.++|+|+|+++
T Consensus       223 A~~l~~aGad~I~V~  237 (365)
T 3sr7_A          223 IQTAIDLGVKTVDIS  237 (365)
T ss_dssp             HHHHHHHTCCEEECC
T ss_pred             HHHHHHcCCCEEEEe
Confidence            788889999999984

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=84.20  E-value=7.3  Score=31.84  Aligned_cols=86  Identities=15%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             HHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEE--ccCCC----CCccc---CHHHHHHHHHHHHHHHH
Q psy7930          23 LAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMI--RVRAG----FDFVF---SQAEKEIMALDCHQFVE   93 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMI--RP~R~----gdF~Y---s~~E~~~M~~dI~~~~~   93 (146)
                      ....++||+=|-|=     || .--...++.+.+ .+|||+--|  -| +.    |+|.-   ++++.+.+.+|.+.+.+
T Consensus       101 ~rl~kaGa~aVklE-----gg-~e~~~~I~al~~-agipV~gHiGLtP-q~v~~~ggf~v~grt~~~a~~~i~rA~a~~e  172 (264)
T 1m3u_A          101 ATVMRAGANMVKIE-----GG-EWLVETVQMLTE-RAVPVCGHLGLTP-QSVNIFGGYKVQGRGDEAGDQLLSDALALEA  172 (264)
T ss_dssp             HHHHHTTCSEEECC-----CS-GGGHHHHHHHHH-TTCCEEEEEESCG-GGHHHHTSSCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEC-----Cc-HHHHHHHHHHHH-CCCCeEeeecCCc-eeecccCCeEEEeCCHHHHHHHHHHHHHHHH
Confidence            35667899988764     44 233555665544 479985444  46 32    45643   67788999999999999


Q ss_pred             cCCCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          94 SGADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      +||+++|+=++.+      +..+++.+..
T Consensus       173 AGA~~ivlE~vp~------~~a~~it~~l  195 (264)
T 1m3u_A          173 AGAQLLVLECVPV------ELAKRITEAL  195 (264)
T ss_dssp             HTCCEEEEESCCH------HHHHHHHHHC
T ss_pred             CCCcEEEEecCCH------HHHHHHHHhC
Confidence            9999999977542      3445555544

>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1

Probab=84.18  E-value=1.4  Score=39.31  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=55.1

Q ss_pred             CCCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCC
Q psy7930          58 VLVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        58 ~~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      ..+||+||.=-   ...+.|    ..-+.|..+++.+|++|+|||.+    |+.-.  .++.|...-++|.+.++  |++
T Consensus        11 ~~vpv~VMlPLd~V~~~~~~----~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLK   86 (498)
T 1fa2_A           11 NYVSLYVMLPLGVVNADNVF----PDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLK   86 (498)
T ss_dssp             GCCEEEEECCTTSSCSSSCC----CCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCE
T ss_pred             CCceEEEEeecceecCCCee----CCHHHHHHHHHHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCe
Confidence            36899999843   012222    24578899999999999999998    44543  57899999999999997  676


Q ss_pred             eEEeecccCC
Q psy7930         127 ITFHRAFDVV  136 (146)
Q Consensus       127 vtFHRAFD~~  136 (146)
                      +.-=+.|-+|
T Consensus        87 lq~vmSFHqC   96 (498)
T 1fa2_A           87 IQAIMSFHQC   96 (498)
T ss_dssp             EEEEEECSCB
T ss_pred             EEEEEEeeec
Confidence            6545555544

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=84.00  E-value=8.5  Score=32.61  Aligned_cols=66  Identities=14%  Similarity=0.275  Sum_probs=43.6

Q ss_pred             CHHHHHHHHhhCCCcEEE-EEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee----ecCCCCcCHHHHHHHHHH
Q psy7930          47 TLGLYRVIKRLVLVPVFV-MIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA----LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        47 S~g~i~~~~~~~~ipv~v-MIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~----L~~dg~iD~~~~~~Li~~  121 (146)
                      +...++.+++..++||.| .+         .+       .+|.+.+.++|+|+|+++-    -...|.-+.+.+.++.++
T Consensus       240 ~~~~i~~lr~~~~~PvivKgv---------~~-------~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~a  303 (392)
T 2nzl_A          240 SWEDIKWLRRLTSLPIVAKGI---------LR-------GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEA  303 (392)
T ss_dssp             CHHHHHHHC--CCSCEEEEEE---------CC-------HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEec---------CC-------HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHH
Confidence            567788888888899876 22         22       2468899999999999931    112244567788888877


Q ss_pred             hC-CCCeE
Q psy7930         122 IG-DRPIT  128 (146)
Q Consensus       122 a~-~~~vt  128 (146)
                      .+ .+|+.
T Consensus       304 v~~~ipVi  311 (392)
T 2nzl_A          304 VEGKVEVF  311 (392)
T ss_dssp             HTTSSEEE
T ss_pred             cCCCCEEE
Confidence            65 35554

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=83.93  E-value=1.9  Score=36.34  Aligned_cols=66  Identities=20%  Similarity=0.172  Sum_probs=41.5

Q ss_pred             HcCCCEEEecC-CCCCCCCC----CC--HHHHHHHHhh-------CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          27 RGGADRLELCA-ALSEGGLT----PT--LGLYRVIKRL-------VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        27 ~~GAdRIELc~-~l~~GGlT----PS--~g~i~~~~~~-------~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      ..+||-|||+- ....-|+-    |.  ..+++.+++.       .++||.|=||| -     .++++   +.+-++.+.
T Consensus       174 ~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p-~-----~~~~~---~~~ia~~~~  244 (367)
T 3zwt_A          174 GPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAP-D-----LTSQD---KEDIASVVK  244 (367)
T ss_dssp             GGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECS-C-----CCHHH---HHHHHHHHH
T ss_pred             hhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCC-C-----CCHHH---HHHHHHHHH
Confidence            34699999973 22222321    21  2345555442       57999999999 2     34444   445567778


Q ss_pred             HcCCCEEEE
Q psy7930          93 ESGADGFVI  101 (146)
Q Consensus        93 ~~GadG~Vf  101 (146)
                      ++|+|||++
T Consensus       245 ~aGadgi~v  253 (367)
T 3zwt_A          245 ELGIDGLIV  253 (367)
T ss_dssp             HHTCCEEEE
T ss_pred             HcCCCEEEE
Confidence            999999986

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=83.52  E-value=15  Score=29.25  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCC----CHHHHHHHHhhC-CCc--EEEEEccCCCCCcccCHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTP----TLGLYRVIKRLV-LVP--VFVMIRVRAGFDFVFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTP----S~g~i~~~~~~~-~ip--v~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~   92 (146)
                      +++....++|||.+.+=-  -.|...|    ...+++++++.. ++|  ++.||..  .+             +=++.+.
T Consensus        44 ~~i~~l~~~G~d~lHvDV--mDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~--p~-------------~~i~~~~  106 (246)
T 3inp_A           44 DDVKAVLAAGADNIHFDV--MDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKP--VD-------------ALIESFA  106 (246)
T ss_dssp             HHHHHHHHTTCCCEEEEE--EBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSS--CH-------------HHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEe--cCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCC--HH-------------HHHHHHH
Confidence            556667789999887731  1244434    567899999887 666  6667664  21             2356678


Q ss_pred             HcCCCEEEEeeecCC
Q psy7930          93 ESGADGFVIGALTGE  107 (146)
Q Consensus        93 ~~GadG~VfG~L~~d  107 (146)
                      ++|||.+.|..-..+
T Consensus       107 ~aGAd~itvH~Ea~~  121 (246)
T 3inp_A          107 KAGATSIVFHPEASE  121 (246)
T ss_dssp             HHTCSEEEECGGGCS
T ss_pred             HcCCCEEEEccccch
Confidence            899999999876543

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=83.27  E-value=6.6  Score=30.88  Aligned_cols=71  Identities=18%  Similarity=0.157  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCC----CCCCHHHHHHHHhhCCC--cEEEEEccCCCCCcccCHHHHHHHHHHHHHH
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGG----LTPTLGLYRVIKRLVLV--PVFVMIRVRAGFDFVFSQAEKEIMALDCHQF   91 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GG----lTPS~g~i~~~~~~~~i--pv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~   91 (146)
                      ++++.....++|||.+++=-  --|.    +|=...+++.+++.++.  .+|.||-.  .+             +-++.+
T Consensus        14 ~l~~~i~~~~~gad~lHvDv--mDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d--p~-------------~~i~~~   76 (231)
T 3ctl_A           14 KFKEQIEFIDSHADYFHIDI--MDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR--PQ-------------DYIAQL   76 (231)
T ss_dssp             GHHHHHHHHHTTCSCEEEEE--ECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC--GG-------------GTHHHH
T ss_pred             hHHHHHHHHHcCCCEEEEEE--EeCccCccchhcHHHHHHHHhccCCcEEEEEEecC--HH-------------HHHHHH
Confidence            34444444499999987642  1355    44457799999987654  58888875  22             124667


Q ss_pred             HHcCCCEEEEeeec
Q psy7930          92 VESGADGFVIGALT  105 (146)
Q Consensus        92 ~~~GadG~VfG~L~  105 (146)
                      .++|||++.|-+=.
T Consensus        77 ~~aGAd~itvh~Ea   90 (231)
T 3ctl_A           77 ARAGADFITLHPET   90 (231)
T ss_dssp             HHHTCSEEEECGGG
T ss_pred             HHcCCCEEEECccc
Confidence            78899998887543

>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A

Probab=83.26  E-value=5.4  Score=31.97  Aligned_cols=84  Identities=18%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHH-HHhhCCCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPT-LGLYRV-IKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~-~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      +..|=+-..+.+-+..|.. |||-|=|+-   +.|..|+ ....+. +++...-+..++||+ ++-+--       ....
T Consensus         8 rs~L~vP~~~~~~~~ka~~-gaD~vilDl---EDav~~~~k~~Ar~~l~~~~~~~~~~~VRV-n~~~~~-------~~~~   75 (273)
T 1u5h_A            8 PGWLFCPADAPEAFAAAAA-AADVVILDL---EDGVAEAQKPAARNALRDTPLDPERTVVRI-NAGGTA-------DQAR   75 (273)
T ss_dssp             SEEEEEETTCGGGHHHHHH-HCSEEEEES---STTSCGGGHHHHHHHHHHSCCCTTSEEEEC-CCTTCH-------HHHH
T ss_pred             CeEEEeeCCCHHHHHHHHh-CCCEEEEEC---CCCCCcCCHHHHHHHHHhcCcCCCeEEEEE-CCCCch-------HHHH
Confidence            3456677778888888888 999999994   4777776 232222 222222245678898 665432       3567


Q ss_pred             HHHHHHHcCCCEEEEeee
Q psy7930          87 DCHQFVESGADGFVIGAL  104 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L  104 (146)
                      |++.+...|++||++=-.
T Consensus        76 dl~~~~~~g~~gi~lPKv   93 (273)
T 1u5h_A           76 DLEALAGTAYTTVMLPKA   93 (273)
T ss_dssp             HHHHHHTSCCCEEEETTC
T ss_pred             HHHHHHhcCCCEEEeCCC
Confidence            888888899999987533

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=83.23  E-value=4.3  Score=33.89  Aligned_cols=66  Identities=12%  Similarity=0.113  Sum_probs=44.7

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC-CCEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG-ADGFV  100 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G-adG~V  100 (146)
                      +..+++.|+|-|++-.....++-.-...+++.+++.+++||.+      .|++  |.++       +..+.+.| ||+|.
T Consensus       256 a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~------~Ggi--~~~~-------a~~~l~~g~aD~V~  320 (365)
T 2gou_A          256 AALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIY------AGRY--NAEK-------AEQAINDGLADMIG  320 (365)
T ss_dssp             HHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE------ESSC--CHHH-------HHHHHHTTSCSEEE
T ss_pred             HHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEE------eCCC--CHHH-------HHHHHHCCCcceeh
Confidence            6778899999999976422221111357888999999998743      2445  6544       34455566 99999


Q ss_pred             Ee
Q psy7930         101 IG  102 (146)
Q Consensus       101 fG  102 (146)
                      ||
T Consensus       321 ig  322 (365)
T 2gou_A          321 FG  322 (365)
T ss_dssp             CC
T ss_pred             hc
Confidence            98

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=83.06  E-value=7.3  Score=31.32  Aligned_cols=85  Identities=12%  Similarity=0.047  Sum_probs=58.2

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +..+.+.||++|-||+.  .|.+||.  ..+++.+++.+ ++|+.+..-. ..|- -+         .-...+.++|++-
T Consensus       162 ~~~~~~~Ga~~i~l~DT--~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn-~~Gl-a~---------An~laA~~aGa~~  228 (298)
T 2cw6_A          162 TKKFYSMGCYEISLGDT--IGVGTPGIMKDMLSAVMQEVPLAALAVHCHD-TYGQ-AL---------ANTLMALQMGVSV  228 (298)
T ss_dssp             HHHHHHTTCSEEEEEET--TSCCCHHHHHHHHHHHHHHSCGGGEEEEEBC-TTSC-HH---------HHHHHHHHTTCCE
T ss_pred             HHHHHHcCCCEEEecCC--CCCcCHHHHHHHHHHHHHhCCCCeEEEEECC-CCch-HH---------HHHHHHHHhCCCE
Confidence            55578889999999985  6899995  67889888888 5888887776 3331 11         2355566789985


Q ss_pred             EEEeeec----------CCCCcCHHHHHHHHH
Q psy7930          99 FVIGALT----------GEQEIDIEFIRQLKT  120 (146)
Q Consensus        99 ~VfG~L~----------~dg~iD~~~~~~Li~  120 (146)
                      |= +.+.          .-|.++.+.+-..+.
T Consensus       229 vd-~tv~GlG~cp~a~g~aGN~~~E~lv~~l~  259 (298)
T 2cw6_A          229 VD-SSVAGLGGCPYAQGASGNLATEDLVYMLE  259 (298)
T ss_dssp             EE-EBTTSCCCCTTSCSSCCBCBHHHHHHHHH
T ss_pred             EE-eecccccCCCCCCCCcCChhHHHHHHHHH
Confidence            53 3344          356676665555544

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=83.06  E-value=0.87  Score=36.50  Aligned_cols=105  Identities=18%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHHHhhCC-CcEEEEEccCC---C-CCcccCHH-----HHHHHHHHHH
Q psy7930          21 SALAAVRGGADRLELCAALSEG-GLTPTLGLYRVIKRLVL-VPVFVMIRVRA---G-FDFVFSQA-----EKEIMALDCH   89 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~~~~~~-ipv~vMIRP~R---~-gdF~Ys~~-----E~~~M~~dI~   89 (146)
                      ++.... .||+||=+.+.+-.. | .+.+.+++++.+.++ --|.++|-. +   + |-++++..     .+....+=++
T Consensus        89 ~~~~~l-~Ga~~Viigs~a~~~~g-~~~p~~~~~~~~~~g~~~ivv~iD~-k~~~~~g~~V~~~gw~~~t~~~~~~e~a~  165 (260)
T 2agk_A           89 NCLEWL-KWASKVIVTSWLFTKEG-HFQLKRLERLTELCGKDRIVVDLSC-RKTQDGRWIVAMNKWQTLTDLELNADTFR  165 (260)
T ss_dssp             THHHHT-TTCSCEEECGGGBCTTC-CBCHHHHHHHHHHHCGGGEEEEEEE-EEEETTEEEEEETTTTEEEEEEESHHHHH
T ss_pred             HHHHHh-cCCCEEEECcHHHhhcC-CCCHHHHHHHHHHhCcCcEEEEEEe-eecCCCceEEEEcCCccccCccHHHHHHH
Confidence            667777 999999999876554 5 455688988887664 346666654 3   3 22443211     0111113355


Q ss_pred             HHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhC---CCCeEE
Q psy7930          90 QFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIG---DRPITF  129 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~---~~~vtF  129 (146)
                      .+.++ ++.|++=-.+.||.   .|.+.++++.++..   +.|++-
T Consensus       166 ~~~~~-a~~il~t~i~~dG~~~G~d~eli~~l~~~~~~~~~iPVIa  210 (260)
T 2agk_A          166 ELRKY-TNEFLIHAADVEGLCGGIDELLVSKLFEWTKDYDDLKIVY  210 (260)
T ss_dssp             HHTTT-CSEEEEEC-------CCCCHHHHHHHHHHHTTCSSCEEEE
T ss_pred             HHHHh-cCEEEEEeeccccCcCCCCHHHHHHHHHhhcccCCceEEE
Confidence            66778 99999977777664   79999999999884   677664

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=82.97  E-value=3.6  Score=33.54  Aligned_cols=63  Identities=21%  Similarity=0.126  Sum_probs=46.5

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ++.+.+-+++|||-|=+=      | .|+...++++.+.+++|++++..|   +  .++          .+.++++|..-
T Consensus       171 i~Ra~ay~eAGAd~i~~e------~-~~~~~~~~~i~~~~~~P~n~~~~~---~--~~~----------~~eL~~lGv~~  228 (275)
T 2ze3_A          171 VRRGQAYADAGADGIFVP------L-ALQSQDIRALADALRVPLNVMAFP---G--SPV----------PRALLDAGAAR  228 (275)
T ss_dssp             HHHHHHHHHTTCSEEECT------T-CCCHHHHHHHHHHCSSCEEEECCT---T--SCC----------HHHHHHTTCSE
T ss_pred             HHHHHHHHHCCCCEEEEC------C-CCCHHHHHHHHHhcCCCEEEecCC---C--CCC----------HHHHHHcCCcE
Confidence            456778889999977552      3 399999999999999999877555   2  233          34566778887


Q ss_pred             EEEee
Q psy7930          99 FVIGA  103 (146)
Q Consensus        99 ~VfG~  103 (146)
                      +.+|.
T Consensus       229 v~~~~  233 (275)
T 2ze3_A          229 VSFGQ  233 (275)
T ss_dssp             EECTT
T ss_pred             EEECh
Confidence            77774

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=82.96  E-value=5.2  Score=32.29  Aligned_cols=90  Identities=14%  Similarity=0.033  Sum_probs=58.2

Q ss_pred             cccceeEEEecCHHHHHHH---HHcCCCEEEecCCCCCCCCCCCHH-HHHHHHh-hCCCcEEEEEccCC-CCCcccCHHH
Q psy7930           7 WNKTTLEVCVDSVASALAA---VRGGADRLELCAALSEGGLTPTLG-LYRVIKR-LVLVPVFVMIRVRA-GFDFVFSQAE   80 (146)
Q Consensus         7 ~~~~~lEvcv~s~~~a~~A---~~~GAdRIELc~~l~~GGlTPS~g-~i~~~~~-~~~ipv~vMIRP~R-~gdF~Ys~~E   80 (146)
                      ..++.+=+...|.+++.++   ...|||=|||.-++-.   .++.. +.+++++ ..++|+.+-+|++. ||-|..++++
T Consensus        34 ~pkIcvpl~~~t~~e~~~~~~~~~~gaD~VElRvD~l~---~~~~~~v~~~l~~~~~~~PiI~T~Rt~~EGG~~~~~~~~  110 (259)
T 3l9c_A           34 SMKIVVPVMPQNIEEANQLDLTRIDSTDIIEWRADYLV---KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNED  110 (259)
T ss_dssp             CCEEEEEECCSSHHHHHHCCCTTCCTTCEEEEEGGGSC---GGGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHHH
T ss_pred             CcEEEEEecCCCHHHHHHHHHhhccCCCEEEEEecccc---chhHHHHHHHHHHhcCCCcEEEEEeehhhCCCCCCCHHH
Confidence            3445566667888888742   3469999999987654   23332 3334444 35899999999844 6778888887


Q ss_pred             HHHHHHHHHHHHHcCCCEEEE
Q psy7930          81 KEIMALDCHQFVESGADGFVI  101 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~Vf  101 (146)
                      ...+.+.+.  +..|+|-|-+
T Consensus       111 y~~ll~~~~--~~~~~dyIDV  129 (259)
T 3l9c_A          111 YLAIIRDIA--ALYQPDYIDF  129 (259)
T ss_dssp             HHHHHHHHH--HHHCCSEEEE
T ss_pred             HHHHHHHHH--HhcCCCEEEE
Confidence            766555432  2256665433

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=82.88  E-value=8.3  Score=33.63  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      ++.....+.+.||.=|-....  .-=...|...++++++.+++||   +|=    ||..++.+       |..++.+|||
T Consensus        69 ~~~~iA~~y~~~A~~IsvLTd--~~~F~gs~~dL~~vr~~v~lPv---LrK----DFI~d~~Q-------i~ea~~~GAD  132 (452)
T 1pii_A           69 DPARIAAIYKHYASAISVLTD--EKYFQGSFNFLPIVSQIAPQPI---LCK----DFIIDPYQ-------IYLARYYQAD  132 (452)
T ss_dssp             CHHHHHHHHTTTCSEEEEECC--STTTCCCTTHHHHHHHHCCSCE---EEE----SCCCSHHH-------HHHHHHTTCS
T ss_pred             CHHHHHHHHHhhCcEEEEEec--ccccCCCHHHHHHHHHhcCCCe---EEE----eccCCHHH-------HHHHHHcCCC
Confidence            344444444445988876542  1222337889999999999998   565    48877653       4558999999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                      .+.+=+   . .++.+.+++|++.|+.
T Consensus       133 ~ILLi~---a-~l~~~~l~~l~~~a~~  155 (452)
T 1pii_A          133 ACLLML---S-VLDDDQYRQLAAVAHS  155 (452)
T ss_dssp             EEEEET---T-TCCHHHHHHHHHHHHH
T ss_pred             EEEEEc---c-cCCHHHHHHHHHHHHH
Confidence            987533   1 4677899999999973

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=82.80  E-value=5.4  Score=31.82  Aligned_cols=77  Identities=16%  Similarity=0.136  Sum_probs=50.0

Q ss_pred             HHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          25 AVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        25 A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      |+-.|-+-+=|-+    -|.+....+++++++.+ ++||.+      ||+ .-|.+       +++.+. .|||++|+|=
T Consensus       149 a~~~g~~~VYld~----sG~~~~~~~i~~i~~~~~~~Pv~v------GGG-I~t~e-------~a~~~~-~gAD~VVVGS  209 (228)
T 3vzx_A          149 SELLQLPIFYLEY----SGVLGDIEAVKKTKAVLETSTLFY------GGG-IKDAE-------TAKQYA-EHADVIVVGN  209 (228)
T ss_dssp             HHHTTCSEEEEEC----TTSCCCHHHHHHHHHHCSSSEEEE------ESS-CCSHH-------HHHHHH-TTCSEEEECT
T ss_pred             HHHcCCCEEEecC----CCCcCCHHHHHHHHHhcCCCCEEE------eCC-CCCHH-------HHHHHH-hCCCEEEECh
Confidence            3334567665554    35666899999999999 799865      332 22333       334444 5999999994


Q ss_pred             ecCCCCcCHHHHHHHHHHhC
Q psy7930         104 LTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus       104 L~~dg~iD~~~~~~Li~~a~  123 (146)
                      .--.   |.+..++++++.+
T Consensus       210 a~v~---~p~~~~~~v~a~~  226 (228)
T 3vzx_A          210 AVYE---DFDRALKTVAAVK  226 (228)
T ss_dssp             HHHH---CHHHHHHHHHHHH
T ss_pred             HHhc---CHHHHHHHHHHHh
Confidence            3211   5777788777653

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=82.75  E-value=14  Score=34.04  Aligned_cols=100  Identities=16%  Similarity=0.056  Sum_probs=65.0

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh---CCCcEEEEEccCCCCCc------ccCHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL---VLVPVFVMIRVRAGFDF------VFSQAEKEIMALDCH   89 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~---~~ipv~vMIRP~R~gdF------~Ys~~E~~~M~~dI~   89 (146)
                      ..++..|.++|++.+-+..++.      ....++...+.   .+..+...|--  .+||      .|+.+.   ..+-++
T Consensus       200 ~~~i~~a~~~Gvd~irIf~s~n------~l~~l~~~i~~ak~~G~~v~~~i~~--~~d~~dp~r~~~~~e~---~~~~a~  268 (718)
T 3bg3_A          200 FKFCEVAKENGMDVFRVFDSLN------YLPNMLLGMEAAGSAGGVVEAAISY--TGDVADPSRTKYSLQY---YMGLAE  268 (718)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSC------CHHHHHHHHHHHHTTTSEEEEEEEC--CSCTTCTTCCTTCHHH---HHHHHH
T ss_pred             HHHHHHHHhcCcCEEEEEecHH------HHHHHHHHHHHHHHcCCeEEEEEEe--eccccCCCCCCCCHHH---HHHHHH
Confidence            3677889999999999997664      24444444433   24555544433  3322      234444   445566


Q ss_pred             HHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEee
Q psy7930          90 QFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFHR  131 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFHR  131 (146)
                      .+.++||+-|.+.  +--|-.......+|+++.+    +.++-||-
T Consensus       269 ~l~~~Ga~~I~l~--DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~  312 (718)
T 3bg3_A          269 ELVRAGTHILCIK--DMAGLLKPTACTMLVSSLRDRFPDLPLHIHT  312 (718)
T ss_dssp             HHHHHTCSEEEEE--CTTSCCCHHHHHHHHHHHHHHSTTCCEEEEC
T ss_pred             HHHHcCCCEEEEc--CcCCCcCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            6778899977664  6678888888888877663    57888883

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=82.70  E-value=14  Score=30.96  Aligned_cols=68  Identities=18%  Similarity=0.131  Sum_probs=46.4

Q ss_pred             CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEee----ecCCCCcCHHHHHHHHHH
Q psy7930          46 PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGA----LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        46 PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~----L~~dg~iD~~~~~~Li~~  121 (146)
                      .+...++.+++..++||.|=.-        -+       .+|.+.+.++|+|+|++.-    --..|.-+.+.+.++.++
T Consensus       216 ~~~~~i~~lr~~~~~PvivK~v--------~~-------~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~  280 (368)
T 2nli_A          216 ISPRDIEEIAGHSGLPVFVKGI--------QH-------PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAER  280 (368)
T ss_dssp             CCHHHHHHHHHHSSSCEEEEEE--------CS-------HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEEcC--------CC-------HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHH
Confidence            4567788888888888765211        11       2667889999999999932    112345677888888887


Q ss_pred             hC-CCCeE
Q psy7930         122 IG-DRPIT  128 (146)
Q Consensus       122 a~-~~~vt  128 (146)
                      .+ .+|+.
T Consensus       281 v~~~ipVi  288 (368)
T 2nli_A          281 VNKRVPIV  288 (368)
T ss_dssp             HTTSSCEE
T ss_pred             hCCCCeEE
Confidence            75 46654

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=82.68  E-value=1.7  Score=37.60  Aligned_cols=75  Identities=20%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             HHHHHHHHHcCCCEEEec-CCCCCCCCC----CC--HHHHHHHHhh--------------------CCCc-EEEEEccCC
Q psy7930          19 VASALAAVRGGADRLELC-AALSEGGLT----PT--LGLYRVIKRL--------------------VLVP-VFVMIRVRA   70 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc-~~l~~GGlT----PS--~g~i~~~~~~--------------------~~ip-v~vMIRP~R   70 (146)
                      +..+......-||-|||+ |.....|+.    |.  ..+++.+++.                    .++| |.|=|+| -
T Consensus       201 y~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~p-d  279 (415)
T 3i65_A          201 LKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAP-D  279 (415)
T ss_dssp             HHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECS-C
T ss_pred             HHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecC-C
Confidence            333333444459999998 333334442    22  3456666654                    2689 9999999 2


Q ss_pred             CCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          71 GFDFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        71 ~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                           .+++++.   +=++.+.+.|+|||++-
T Consensus       280 -----~~~~~i~---~iA~~a~~aGaDgIiv~  303 (415)
T 3i65_A          280 -----LNQEQKK---EIADVLLETNIDGMIIS  303 (415)
T ss_dssp             -----CCHHHHH---HHHHHHHHHTCSEEEEC
T ss_pred             -----CCHHHHH---HHHHHHHHcCCcEEEEe
Confidence                 2455543   34566788999999865

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=82.44  E-value=7.2  Score=31.35  Aligned_cols=97  Identities=10%  Similarity=0.028  Sum_probs=63.7

Q ss_pred             HHHHHHHHHcCCCEEEecCCCC--CCCCCCCHHH---HHHHHhh---CCCcEEEEEccCCCCCcccC----HHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAALS--EGGLTPTLGL---YRVIKRL---VLVPVFVMIRVRAGFDFVFS----QAEKEIMAL   86 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~--~GGlTPS~g~---i~~~~~~---~~ipv~vMIRP~R~gdF~Ys----~~E~~~M~~   86 (146)
                      .+.+....+.||.-|-|=+...  -..+.|.-..   |+.+++.   .++|..|+=|-   +.|.-.    .+.++...+
T Consensus        96 ~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRt---d~~~~g~~~~~~~~~~ai~  172 (255)
T 2qiw_A           96 ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRT---DAVKLGADVFEDPMVEAIK  172 (255)
T ss_dssp             HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEE---CHHHHCTTTSSSHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEe---chhhccCCcchHHHHHHHH
Confidence            6677778889999988865421  1123343333   4444333   27998888876   222211    236899999


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          87 DCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +.+.+.++|||++++=++     -+.+..+++.+..+
T Consensus       173 ra~a~~eAGAd~i~~e~~-----~~~~~~~~i~~~~~  204 (255)
T 2qiw_A          173 RIKLMEQAGARSVYPVGL-----STAEQVERLVDAVS  204 (255)
T ss_dssp             HHHHHHHHTCSEEEECCC-----CSHHHHHHHHTTCS
T ss_pred             HHHHHHHcCCcEEEEcCC-----CCHHHHHHHHHhCC
Confidence            999999999999999443     45667777776554

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=82.39  E-value=6.1  Score=32.36  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=60.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHH---HHHHHHh---hCCCcEEEEEccCCCCCcc--cCHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLG---LYRVIKR---LVLVPVFVMIRVRAGFDFV--FSQAEKEIMALDCHQF   91 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g---~i~~~~~---~~~ipv~vMIRP~R~gdF~--Ys~~E~~~M~~dI~~~   91 (146)
                      .++..|.+.|||=+-+--.+...  .|...   .++++.+   ..++|+.+++-| |+..+-  +++  -+...+-++.+
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~d--~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~-~g~~v~~~~~~--~~~v~~aa~~a  186 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRSD--EDAQQRLNMVKEFNELCHSNGLLSIIEPVV-RPPRCGDKFDR--EQAIIDAAKEL  186 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECTT--SCHHHHHHHHHHHHHHHHTTTCEEEEEEEE-CCCSSCSCCCH--HHHHHHHHHHH
T ss_pred             hhHHHHHHcCCCEEEEEEEcCCC--ccHHHHHHHHHHHHHHHHHcCCcEEEEEEC-CCCccccCCCh--hHHHHHHHHHH
Confidence            56677889999988844333211  22233   3333333   348999999999 776543  232  14555668889


Q ss_pred             HHcCCCEEEEee-ecCCCCcCHHHHHHHHHH
Q psy7930          92 VESGADGFVIGA-LTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        92 ~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~  121 (146)
                      .++|+|=+=++. .++-|  +.+.++++++.
T Consensus       187 ~~lGaD~iKv~~~~~~~g--~~~~~~~vv~~  215 (304)
T 1to3_A          187 GDSGADLYKVEMPLYGKG--ARSDLLTASQR  215 (304)
T ss_dssp             TTSSCSEEEECCGGGGCS--CHHHHHHHHHH
T ss_pred             HHcCCCEEEeCCCcCCCC--CHHHHHHHHHh
Confidence            999999666666 33222  77777777776

>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}

Probab=82.33  E-value=0.78  Score=38.98  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             CCcEEEEEccCCCCC--c-ccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHH
Q psy7930          59 LVPVFVMIRVRAGFD--F-VFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        59 ~ipv~vMIRP~R~gd--F-~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~  120 (146)
                      .+||++-.|| ...|  . .+|.++   +...|...+.+|++|||+=- +.+..-..+.|..|-+
T Consensus       254 ~~pV~~Y~r~-~y~d~~~~fLs~~D---L~~TigesaalGa~GiViWG-ss~~~~s~~~C~~l~~  313 (331)
T 2atm_A          254 SPKVLSYWWY-VYQDETNTFLTETD---VKKTFQEIVINGGDGIIIWG-SSSDVNSLSKCKRLQD  313 (331)
T ss_dssp             CCEEEEEEES-EETTEEEEECCHHH---HHHHHHHHHHTTCCEEEEEC-CGGGGSSHHHHHHHHH
T ss_pred             CCceEEEeee-EecCCccccccHHH---HHHHHHHHHHcCCCeEEEec-cccccccHHHHHHHHH
Confidence            6899999999 6543  2 345555   45788888999999999831 1122344556666544

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=81.71  E-value=14  Score=35.64  Aligned_cols=102  Identities=12%  Similarity=0.031  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC-HHHHHHHHhhCCCcEEEEEccCCCCCc------ccCHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT-LGLYRVIKRLVLVPVFVMIRVRAGFDF------VFSQAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS-~g~i~~~~~~~~ipv~vMIRP~R~gdF------~Ys~~E~~~M~~dI~~~~   92 (146)
                      .++..|.++|.|++-+..+++.   ... ...++.++ ..+.-+.+.|.+ -++-|      .|+.+.+..   -++.+.
T Consensus       631 ~~v~~a~~~Gvd~irif~~~sd---~~~~~~~~~~~~-e~g~~~~~~i~~-~~~~~~pe~~~~~~~~~~~~---~a~~~~  702 (1150)
T 3hbl_A          631 KFVQESAKAGIDVFRIFDSLNW---VDQMKVANEAVQ-EAGKISEGTICY-TGDILNPERSNIYTLEYYVK---LAKELE  702 (1150)
T ss_dssp             HHHHHHHHTTCCEEEEECTTCC---GGGGHHHHHHHH-HTTCEEEEEEEC-CSCTTCTTTCSSSSHHHHHH---HHHHHH
T ss_pred             HHHHHHHhCCcCEEEEEeeCCH---HHHHHHHHHHHH-HHhhheeEEEee-cccccChhhcCCCCHHHHHH---HHHHHH
Confidence            4688899999999999876654   122 22333333 345556677777 44322      355554444   456678


Q ss_pred             HcCCCEEEEeeecCCCCcCHHHHHHHHHHhC---CCCeEEee
Q psy7930          93 ESGADGFVIGALTGEQEIDIEFIRQLKTIIG---DRPITFHR  131 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~---~~~vtFHR  131 (146)
                      ++|++-|.+.  +--|........+|+++.+   ++++-||-
T Consensus       703 ~~Ga~~i~l~--Dt~G~~~P~~~~~lv~~l~~~~~~~i~~H~  742 (1150)
T 3hbl_A          703 REGFHILAIK--DMAGLLKPKAAYELIGELKSAVDLPIHLHT  742 (1150)
T ss_dssp             HTTCSEEEEE--ETTCCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HcCCCeeeEc--CccCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            8899976554  6778888888888887765   67888874

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=81.60  E-value=1.7  Score=36.80  Aligned_cols=67  Identities=13%  Similarity=0.043  Sum_probs=45.7

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhCC----CcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLVL----VPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVE   93 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~~----ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~   93 (146)
                      +-+..+.+.||++|-||+  ..|.+||.  ..+++.+++.+.    +|+.+---- ..|        +.  ..-...+.+
T Consensus       161 ~~~~~~~~~Ga~~i~l~D--T~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hn-d~G--------lA--vAN~laAv~  227 (370)
T 3rmj_A          161 EICGAVIEAGATTINIPD--TVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHN-DLG--------LA--VANSLAALK  227 (370)
T ss_dssp             HHHHHHHHHTCCEEEEEC--SSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBC-TTS--------CH--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecC--ccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCC-CCC--------hH--HHHHHHHHH
Confidence            446678899999999999  47999995  678888888774    666554433 112        22  234455667


Q ss_pred             cCCCEE
Q psy7930          94 SGADGF   99 (146)
Q Consensus        94 ~GadG~   99 (146)
                      +||+-|
T Consensus       228 aGa~~v  233 (370)
T 3rmj_A          228 GGARQV  233 (370)
T ss_dssp             TTCCEE
T ss_pred             hCCCEE
Confidence            888643

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=81.48  E-value=8.7  Score=31.60  Aligned_cols=87  Identities=14%  Similarity=0.190  Sum_probs=53.7

Q ss_pred             HHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEc--cCC---CCCcccC--HHHHHHHHHHHHHHHHcC
Q psy7930          23 LAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR--VRA---GFDFVFS--QAEKEIMALDCHQFVESG   95 (146)
Q Consensus        23 ~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIR--P~R---~gdF~Ys--~~E~~~M~~dI~~~~~~G   95 (146)
                      ....++||+=|-|=     || .--...|+.+.+ .+|||+.-|.  |++   -|+|.--  .++.+.+.+|.+.+.++|
T Consensus       102 ~rl~kaGa~aVklE-----dg-~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAG  174 (275)
T 1o66_A          102 AELMAAGAHMVKLE-----GG-VWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAG  174 (275)
T ss_dssp             HHHHHTTCSEEEEE-----CS-GGGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEEEC-----Cc-HHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcC
Confidence            35677899988774     34 223555665544 5899876665  511   2556431  145789999999999999


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      |+++|+=++.+      +..+++.+..
T Consensus       175 A~~ivlE~vp~------~~a~~it~~l  195 (275)
T 1o66_A          175 AAVVLMECVLA------ELAKKVTETV  195 (275)
T ss_dssp             CSEEEEESCCH------HHHHHHHHHC
T ss_pred             CcEEEEecCCH------HHHHHHHHhC
Confidence            99999977542      3455555544

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=81.45  E-value=6.9  Score=30.98  Aligned_cols=86  Identities=19%  Similarity=0.177  Sum_probs=46.8

Q ss_pred             HHHHHHHHHcCCCEEEecCCC-CCCCCCCCH-----HHHHHHHhhCCCcEEEEEccCCCCCcccC-HHHHHHHHHHHHHH
Q psy7930          19 VASALAAVRGGADRLELCAAL-SEGGLTPTL-----GLYRVIKRLVLVPVFVMIRVRAGFDFVFS-QAEKEIMALDCHQF   91 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l-~~GGlTPS~-----g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys-~~E~~~M~~dI~~~   91 (146)
                      .+.+....+.+...+=+.+-. ..|..||..     .+++.+++..++||.|        +|=-+ .+       +++. 
T Consensus       160 ~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~v--------G~GI~t~e-------~~~~-  223 (262)
T 2ekc_A          160 RKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVV--------GFGVSKKE-------HARE-  223 (262)
T ss_dssp             HHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEE--------ESSCCSHH-------HHHH-
T ss_pred             HHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEE--------eCCCCCHH-------HHHH-
Confidence            344444444455555332322 234445533     7888998888999865        23333 43       3444 


Q ss_pred             HHcCCCEEEEe-----eecCCCCcCHHHHHHHHHHhC
Q psy7930          92 VESGADGFVIG-----ALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        92 ~~~GadG~VfG-----~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ...||||+|+|     .+.++   +.++++++++..+
T Consensus       224 ~~~gADgvIVGSai~~~~~~~---~~~~~~~~~~~~~  257 (262)
T 2ekc_A          224 IGSFADGVVVGSALVKLAGQK---KIEDLGNLVKELK  257 (262)
T ss_dssp             HHTTSSEEEECHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHcCCCEEEECHHHHhhhhhh---hHHHHHHHHHHHH
Confidence            35689999999     33222   6778888887653

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=81.19  E-value=22  Score=29.47  Aligned_cols=67  Identities=13%  Similarity=0.184  Sum_probs=45.3

Q ss_pred             CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeee----cCCCCcCHHHHHHHHHHh
Q psy7930          47 TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGAL----TGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        47 S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L----~~dg~iD~~~~~~Li~~a  122 (146)
                      +...++.+++..++||.+=.+.        +.       +|++.+.++|+|+|+++--    ...+..+.+.+.++.+..
T Consensus       213 ~~~~i~~l~~~~~~pv~vK~~~--------~~-------e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~  277 (370)
T 1gox_A          213 SWKDVAWLQTITSLPILVKGVI--------TA-------EDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAA  277 (370)
T ss_dssp             CHHHHHHHHHHCCSCEEEECCC--------SH-------HHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCCEEEEecC--------CH-------HHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHh
Confidence            4567888888889998762222        22       5678899999999999520    112336777788888766


Q ss_pred             C-CCCeE
Q psy7930         123 G-DRPIT  128 (146)
Q Consensus       123 ~-~~~vt  128 (146)
                      + .+++.
T Consensus       278 ~~~ipvi  284 (370)
T 1gox_A          278 QGRIPVF  284 (370)
T ss_dssp             TTSSCEE
T ss_pred             CCCCEEE
Confidence            4 45554

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=81.17  E-value=4.6  Score=30.99  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             cCHHHHHHHHHc---CCCEEEecCCC-CCCCCCC---CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          17 DSVASALAAVRG---GADRLELCAAL-SEGGLTP---TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        17 ~s~~~a~~A~~~---GAdRIELc~~l-~~GGlTP---S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      .+..+...+...   ++|.|-+-+-. ..||.+-   ....++++++.. ++||.+-     || =  +.       +.+
T Consensus       123 ~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~-----GG-I--~~-------~ni  187 (228)
T 1h1y_A          123 GTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVD-----GG-L--GP-------STI  187 (228)
T ss_dssp             TSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEE-----SS-C--ST-------TTH
T ss_pred             CCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEE-----CC-c--CH-------HHH
Confidence            455555555555   99998885532 3335332   245677777777 7887552     33 1  11       256


Q ss_pred             HHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHHH
Q psy7930          89 HQFVESGADGFVIG-ALTGEQEIDIEFIRQLKTI  121 (146)
Q Consensus        89 ~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~~  121 (146)
                      ..+.+.|+|+||+| ++.....+ .+++++|.+.
T Consensus       188 ~~~~~aGaD~vvvGsai~~~~d~-~~~~~~l~~~  220 (228)
T 1h1y_A          188 DVAASAGANCIVAGSSIFGAAEP-GEVISALRKS  220 (228)
T ss_dssp             HHHHHHTCCEEEESHHHHTSSCH-HHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECHHHHCCCCH-HHHHHHHHHH
Confidence            66677799999999 23322112 3455555543

>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A

Probab=80.94  E-value=2.3  Score=33.88  Aligned_cols=50  Identities=24%  Similarity=0.361  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEeec
Q psy7930          83 IMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHRA  132 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHRA  132 (146)
                      ...+.++.+.+.|+.||-+|.--.+..+|-+....+.++|.  ++++.+|-.
T Consensus       128 ~a~~el~~~~~~g~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~lpv~iH~~  179 (334)
T 2hbv_A          128 LACKEASRAVAAGHLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPW  179 (334)
T ss_dssp             HHHHHHHHHHHHTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEECCCCCCCCCCcHHHHHHHHHHHHCCCEEEECCC
Confidence            34466777778899999988754455688889999999885  899999974

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=80.88  E-value=4.7  Score=33.61  Aligned_cols=95  Identities=17%  Similarity=0.207  Sum_probs=58.2

Q ss_pred             HHHHHHHHcCCCEEEecCC--------------C---CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCc
Q psy7930          20 ASALAAVRGGADRLELCAA--------------L---SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDF   74 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~--------------l---~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF   74 (146)
                      +.|..|.++|.|=|||..+              -   .-|| +.      ...+++.+++.+  ++||.|=|+|   .+|
T Consensus       147 ~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGG-slenR~rf~~eiv~aVr~avg~d~pv~vRls~---~~~  222 (343)
T 3kru_A          147 EAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGN-SIENRARFLIEVIDEVRKNWPENKPIFVRVSA---DDY  222 (343)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSS-SHHHHTHHHHHHHHHHHHTSCTTSCEEEEEEC---CCS
T ss_pred             HHHhhccccCCceEEEecccchhHHHhhcccccccchhhcc-chHhHHHHHHHHHHHHHhcCCccCCeEEEeec---hhh
Confidence            5678899999999999832              1   2244 22      145788888887  5788666666   344


Q ss_pred             c---cCHHHHHHHHHHHHHHHHcCCCEEEE--eeecC-----CCCcCHHHHHHHHHHh
Q psy7930          75 V---FSQAEKEIMALDCHQFVESGADGFVI--GALTG-----EQEIDIEFIRQLKTII  122 (146)
Q Consensus        75 ~---Ys~~E~~~M~~dI~~~~~~GadG~Vf--G~L~~-----dg~iD~~~~~~Li~~a  122 (146)
                      .   ++.+|.   .+=++.+.++ +|.+.+  |-..+     .-..+.+..+++.+..
T Consensus       223 ~~~g~~~~~~---~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~  276 (343)
T 3kru_A          223 MEGGINIDMM---VEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC  276 (343)
T ss_dssp             STTSCCHHHH---HHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH
T ss_pred             hccCccHHHH---HHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhc
Confidence            3   334444   3445666777 999887  32211     1124666666666654

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=80.86  E-value=2  Score=35.53  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=46.4

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      -+..+.+.||++|=||+.  .|.+||  -..+++.+++.+ ++|+.+---- ..|        +.  ..-...+.++|++
T Consensus       174 ~~~~~~~~Ga~~i~l~DT--~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hn-d~G--------lA--~AN~laAv~aGa~  240 (337)
T 3ble_A          174 LVEHLSKEHIERIFLPDT--LGVLSPEETFQGVDSLIQKYPDIHFEFHGHN-DYD--------LS--VANSLQAIRAGVK  240 (337)
T ss_dssp             HHHHHHTSCCSEEEEECT--TCCCCHHHHHHHHHHHHHHCTTSCEEEECBC-TTS--------CH--HHHHHHHHHTTCS
T ss_pred             HHHHHHHcCCCEEEEecC--CCCcCHHHHHHHHHHHHHhcCCCeEEEEecC-Ccc--------hH--HHHHHHHHHhCCC
Confidence            466678899999999995  899999  477899999888 7887765544 222        11  2334445567876


Q ss_pred             EE
Q psy7930          98 GF   99 (146)
Q Consensus        98 G~   99 (146)
                      -|
T Consensus       241 ~v  242 (337)
T 3ble_A          241 GL  242 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=80.83  E-value=1.7  Score=37.63  Aligned_cols=68  Identities=19%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             HHHHHHHcCCCEEEecCCC-----------CCCCCCC------CHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHH
Q psy7930          21 SALAAVRGGADRLELCAAL-----------SEGGLTP------TLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEK   81 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l-----------~~GGlTP------S~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~   81 (146)
                      =|..++++|||-|-+-...           ..||++-      |...++++++.+  ++||..     -||  +.|.   
T Consensus       288 iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg-----~GG--I~s~---  357 (415)
T 3i65_A          288 IADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIA-----SGG--IFSG---  357 (415)
T ss_dssp             HHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEE-----CSS--CCSH---
T ss_pred             HHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEE-----ECC--CCCH---
Confidence            3778889999999877533           2577753      457899999888  799864     255  3344   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG  102 (146)
                          +|+..+..+|||+|.+|
T Consensus       358 ----eDa~e~l~aGAd~VqIg  374 (415)
T 3i65_A          358 ----LDALEKIEAGASVCQLY  374 (415)
T ss_dssp             ----HHHHHHHHHTEEEEEES
T ss_pred             ----HHHHHHHHcCCCEEEEc
Confidence                45556667899999998

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=80.76  E-value=1.4  Score=34.48  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             cCHHHHHHHHHcCCCEEEecC-CCCCCCCC--C-CHHHHHHHHhhC-----CCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          17 DSVASALAAVRGGADRLELCA-ALSEGGLT--P-TLGLYRVIKRLV-----LVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~-~l~~GGlT--P-S~g~i~~~~~~~-----~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      .+..+...+...++|.|=+-+ +...||..  | +...++++++..     ++||.|-     || =  |.       +.
T Consensus       122 ~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~-----GG-I--~~-------~~  186 (230)
T 1tqj_A          122 STPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVD-----GG-L--KP-------NN  186 (230)
T ss_dssp             TCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEE-----SS-C--CT-------TT
T ss_pred             CCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEE-----CC-c--CH-------HH
Confidence            666777777778999775544 33344532  1 356777777766     6787662     33 1  11       46


Q ss_pred             HHHHHHcCCCEEEEe-eecCCCCcCHHHHHHHHH
Q psy7930          88 CHQFVESGADGFVIG-ALTGEQEIDIEFIRQLKT  120 (146)
Q Consensus        88 I~~~~~~GadG~VfG-~L~~dg~iD~~~~~~Li~  120 (146)
                      +..+.++||||||+| ++.....+ .++.++|.+
T Consensus       187 ~~~~~~aGad~vvvGSai~~a~d~-~~~~~~l~~  219 (230)
T 1tqj_A          187 TWQVLEAGANAIVAGSAVFNAPNY-AEAIAGVRN  219 (230)
T ss_dssp             THHHHHHTCCEEEESHHHHTSSCH-HHHHHHHHT
T ss_pred             HHHHHHcCCCEEEECHHHHCCCCH-HHHHHHHHH
Confidence            777888999999999 33322111 345666654

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=80.56  E-value=7.8  Score=32.55  Aligned_cols=80  Identities=15%  Similarity=0.031  Sum_probs=49.3

Q ss_pred             HHHHHHHHcCCCEEEecCCC-----------------CCCCCCCC------HHHHHHHHhhCCC-cEEEEEccCCCC--C
Q psy7930          20 ASALAAVRGGADRLELCAAL-----------------SEGGLTPT------LGLYRVIKRLVLV-PVFVMIRVRAGF--D   73 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l-----------------~~GGlTPS------~g~i~~~~~~~~i-pv~vMIRP~R~g--d   73 (146)
                      +.|..|.++|.|-|||..+-                 .-|| +..      ..+++.+++.++- ||-|=|+| ...  +
T Consensus       165 ~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGG-slenR~rf~~evv~aVr~~vg~~~v~vRls~-~~~~~g  242 (361)
T 3gka_A          165 RGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGG-SIENRARLLLEVVDAAIDVWSAARVGVHLAP-RGDAHT  242 (361)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSS-SHHHHSHHHHHHHHHHHHHHCGGGEEEEECT-TCCSSS
T ss_pred             HHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCC-ChhhcHHHHHHHHHHHHHHcCCCeEEEeccc-ccccCC
Confidence            56788999999999998641                 1155 221      4577777777743 77666666 321  1


Q ss_pred             cccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          74 FVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        74 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      +.. .+..+...+=++.+.++|+|-+-+-
T Consensus       243 ~~~-~~~~~~~~~la~~l~~~Gvd~i~v~  270 (361)
T 3gka_A          243 MGD-SDPAATFGHVARELGRRRIAFLFAR  270 (361)
T ss_dssp             CCC-SCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCC-CCcHHHHHHHHHHHHHcCCCEEEEC
Confidence            111 1123344455677788899988764

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=80.53  E-value=7.7  Score=32.14  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=60.9

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCC----C---CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLT----P---TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlT----P---S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      +....+.|.+.||.=+- ..||-|    |   +...++.+++..++++.+|+|. ..   .|. ++++.    +...++.
T Consensus        30 a~~L~~aGv~~IEvg~~-~~p~~~f~~~~~~~~~e~l~~i~~~~~~~~~~L~r~-~~---~~~-~dv~~----~~~a~~~   99 (320)
T 3dxi_A           30 ILAMNELPIDYLEVGYR-NKPSKEYMGKFGYTPVSVLKHLRNISTKKIAIMLNE-KN---TTP-EDLNH----LLLPIIG   99 (320)
T ss_dssp             HHHHHTTTCCEEEEEEC-CSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEG-GG---CCG-GGHHH----HHGGGTT
T ss_pred             HHHHHHhCCCEEEEecc-cCCccccccccccChHHHHHHHhhccCCeEEEEecC-CC---CCh-hhHHH----HHHhhhc
Confidence            33456679999998864 345554    1   2677888877668899999988 33   333 23322    2223458


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhC--CCCeEEee
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIG--DRPITFHR  131 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~vtFHR  131 (146)
                      |+|.|-+-..-    =+.+...+.++.|+  ++.+.|--
T Consensus       100 Gvd~~ri~~~~----~nle~~~~~v~~ak~~G~~v~~~~  134 (320)
T 3dxi_A          100 LVDMIRIAIDP----QNIDRAIVLAKAIKTMGFEVGFNV  134 (320)
T ss_dssp             TCSEEEEEECG----GGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEEecH----HHHHHHHHHHHHHHHCCCEEEEEE
Confidence            99998555311    14777788887776  56666643

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=80.40  E-value=5.5  Score=32.73  Aligned_cols=66  Identities=20%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          18 SVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      -++.+.+-+++|||-|=+=      | .|+...++++.+.+++|+. |+ | -+..-.+|.          +.+.++|+.
T Consensus       170 ai~Ra~ay~eAGAd~i~~e------~-~~~~~~~~~i~~~~~~P~i-i~-~-~g~~~~~~~----------~eL~~lGv~  229 (287)
T 3b8i_A          170 VIQRTLAYQEAGADGICLV------G-VRDFAHLEAIAEHLHIPLM-LV-T-YGNPQLRDD----------ARLARLGVR  229 (287)
T ss_dssp             HHHHHHHHHHTTCSEEEEE------C-CCSHHHHHHHHTTCCSCEE-EE-C-TTCGGGCCH----------HHHHHTTEE
T ss_pred             HHHHHHHHHHcCCCEEEec------C-CCCHHHHHHHHHhCCCCEE-Ee-C-CCCCCCCCH----------HHHHHcCCc
Confidence            3567788999999987663      2 3899999999999999998 44 4 233334554          456677887


Q ss_pred             EEEEee
Q psy7930          98 GFVIGA  103 (146)
Q Consensus        98 G~VfG~  103 (146)
                      -+.+|.
T Consensus       230 ~v~~~~  235 (287)
T 3b8i_A          230 VVVNGH  235 (287)
T ss_dssp             EEECCC
T ss_pred             EEEECh
Confidence            777764

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=80.12  E-value=11  Score=31.13  Aligned_cols=110  Identities=15%  Similarity=0.051  Sum_probs=65.6

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCC------CCCCC--HHHHHHHHhh---CCCcEEEEEccCCCCCccc-CHHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEG------GLTPT--LGLYRVIKRL---VLVPVFVMIRVRAGFDFVF-SQAEK   81 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~G------GlTPS--~g~i~~~~~~---~~ipv~vMIRP~R~gdF~Y-s~~E~   81 (146)
                      +-+.+..++..|.++|++.|.+....+.-      +.|+.  ...++.+.+.   .++.|.  +-+ -  +|-| +..+.
T Consensus        94 ~l~~~~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~-~--~~~~~~~~~~  168 (337)
T 3ble_A           94 GFVDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYL-E--DWSNGFRNSP  168 (337)
T ss_dssp             EESSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEE--EEE-E--THHHHHHHCH
T ss_pred             EEccchhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--EEE-E--ECCCCCcCCH
Confidence            33445568999999999999987543211      22221  2233333322   244443  333 1  1222 23345


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC----CCCeEEe
Q psy7930          82 EIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIG----DRPITFH  130 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~vtFH  130 (146)
                      +...+-++.+.++|++.|.+.  +--|-.....+.+|++..+    +.++.||
T Consensus       169 ~~~~~~~~~~~~~Ga~~i~l~--DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H  219 (337)
T 3ble_A          169 DYVKSLVEHLSKEHIERIFLP--DTLGVLSPEETFQGVDSLIQKYPDIHFEFH  219 (337)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEE--CTTCCCCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEe--cCCCCcCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            555666778889999988775  5567777778777777653    6788888

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=80.06  E-value=6.8  Score=36.10  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhC-CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE-EEeeecCCCCcCHHHHHHHHHHhCCC
Q psy7930          48 LGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF-VIGALTGEQEIDIEFIRQLKTIIGDR  125 (146)
Q Consensus        48 ~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~-VfG~L~~dg~iD~~~~~~Li~~a~~~  125 (146)
                      ...++.+++.. ++++.++.|. +.. |-|+..-=.....||+.+.+.|+|-| +|..++     |.+.++..++.++..
T Consensus       164 ~e~l~~l~~~~~~~~l~~l~R~-~n~-vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n-----~l~~l~~~i~~ak~~  236 (718)
T 3bg3_A          164 WRRLQELRELIPNIPFQMLLRG-ANA-VGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLN-----YLPNMLLGMEAAGSA  236 (718)
T ss_dssp             HHHHHHHHHHCSSSCEEEEECG-GGT-TSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSC-----CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccchHHHHhcc-ccc-ccccccCCcchHHHHHHHHhcCcCEEEEEecHH-----HHHHHHHHHHHHHHc
Confidence            45666666655 6788888886 432 44443222334789999999999976 344443     567888888888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1twda_	247	c.1.30.1 (A:) Copper homeostasis protein CutC {Shi	2e-49

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} Length = 247

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

 Score =  156 bits (396), Expect = 2e-49
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 1/130 (0%)

Query: 12  LEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAG 71
           LE+C  S+  AL A + GADR+ELCAA  EGGLTP+LG+ + +++ V +PV  +IR R G
Sbjct: 3   LEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPRGG 62

Query: 72  FDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHR 131
            DF +S  E   +  D     E G  G V G L  +  +D+  + ++    G   +TFHR
Sbjct: 63  -DFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHR 121

Query: 132 AFDVVREPNE 141
           AFD+   P  
Sbjct: 122 AFDMCANPLY 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	100.0
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.09
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	96.09
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	95.95
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	95.77
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	95.2
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.47
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	94.28
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	94.01
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	93.97
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	93.93
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	93.7
d1vema2	417	Bacterial beta-amylase {Bacillus cereus [TaxId: 13	93.64
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	92.91
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	92.34
d2choa2	310	Glucosaminidase GH84, catalytic domain {Bacteroide	91.98
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	91.36
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	90.2
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	90.09
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	89.65
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	89.35
d1kwga2	393	A4 beta-galactosidase {Thermus thermophilus [TaxId	89.0
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	88.23
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	87.98
d1b1ya_	500	beta-Amylase {Barley (Hordeum vulgare) [TaxId: 451	87.66
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	87.63
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	87.4
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	86.81
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	86.77
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	86.56
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	86.31
d1fa2a_	498	beta-Amylase {Sweet potato (Ipomoea batatas) [TaxI	86.04
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	85.28
d1wdpa1	490	beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}	84.8
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	84.73
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	84.5
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	84.38
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	83.89
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	83.35
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	83.03
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	82.64
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	82.64
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	82.3
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	82.0
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	80.89
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	80.45
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	80.13

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=100.00  E-value=6.9e-60  Score=387.20  Aligned_cols=130  Identities=39%  Similarity=0.653  Sum_probs=128.7

Q ss_pred             eeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          11 TLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        11 ~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      +|||||+|+++|.+|+++||||||||++|.+||||||+++++.+++.++|||+||||| |+|||+||+.|+++|++||+.
T Consensus         2 llEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRP-R~GdF~Ys~~E~~~M~~di~~   80 (247)
T d1twda_           2 LLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRP-RGGDFCYSDGEFAAILEDVRT   80 (247)
T ss_dssp             EEEEEESSHHHHHHHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCS-SSSCSCCCHHHHHHHHHHHHH
T ss_pred             eEEEEeCCHHHHHHHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEec-CCCCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhCCCCeEEeecccCCCCccc
Q psy7930          91 FVESGADGFVIGALTGEQEIDIEFIRQLKTIIGDRPITFHRAFDVVREPNE  141 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~vtFHRAFD~~~d~~~  141 (146)
                      ++++|+||||||+||+||+||.+++++|+++|+|+++|||||||.++||.+
T Consensus        81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~~l~vTFHRAfD~~~d~~~  131 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLY  131 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHH
T ss_pred             HHHcCCCeEEEEEECCCCCccHHHHHHHHHHhcccCeeeehhhhhhCCHHH
Confidence            999999999999999999999999999999999999999999999999976

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.09  E-value=0.0024  Score=46.49  Aligned_cols=82  Identities=15%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             cccceeEEEecCHHHHHHHHHcCCCEEEecCC-CCCCC--CCCC---HHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930           7 WNKTTLEVCVDSVASALAAVRGGADRLELCAA-LSEGG--LTPT---LGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus         7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~-l~~GG--lTPS---~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +...++-.-+.|.++++.+.+.|+|-|-.... ...++  ..|.   ..+++++++..++||.+     -|| . -|.  
T Consensus       117 ~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia-----~GG-I-~t~--  187 (222)
T d1y0ea_         117 APNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA-----EGN-V-ITP--  187 (222)
T ss_dssp             CTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE-----ESS-C-CSH--
T ss_pred             CCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEE-----eCC-C-CCH--
Confidence            44566777789999999999999999976543 12222  2222   46677788888999864     244 2 233  


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe
Q psy7930          81 KEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG  102 (146)
                           +|+..+.++|||||++|
T Consensus       188 -----~d~~~~~~~GAdgV~iG  204 (222)
T d1y0ea_         188 -----DMYKRVMDLGVHCSVVG  204 (222)
T ss_dssp             -----HHHHHHHHTTCSEEEEC
T ss_pred             -----HHHHHHHHcCCCEEEEc
Confidence                 67888889999999999

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.09  E-value=0.022  Score=41.45  Aligned_cols=82  Identities=17%  Similarity=0.117  Sum_probs=55.0

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC----CCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALSEG----GLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G----GlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      ..++=.-+.|.+++..|.+.|||-|-.-. ...+    +..|..-.+....+..++||.+-     || .. |.      
T Consensus       130 ~~~v~~~v~t~~~a~~a~~~Gad~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~-----GG-I~-t~------  195 (230)
T d1yxya1         130 NQLLMADISTFDEGLVAHQAGIDFVGTTL-SGYTPYSRQEAGPDVALIEALCKAGIAVIAE-----GK-IH-SP------  195 (230)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTCSEEECTT-TTSSTTSCCSSSCCHHHHHHHHHTTCCEEEE-----SC-CC-SH------
T ss_pred             CceEecCCCCHHHHHHHHhcCCCEEEeec-ccccccccccchHHHHHHHHHhcCCCeEEEe-----CC-CC-CH------
Confidence            34444568899999999999999886543 2222    22233334555666789998652     33 32 22      


Q ss_pred             HHHHHHHHHcCCCEEEEe-eec
Q psy7930          85 ALDCHQFVESGADGFVIG-ALT  105 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG-~L~  105 (146)
                       +|+..+.++|||||++| +++
T Consensus       196 -~d~~~al~~GAd~V~vGsAi~  216 (230)
T d1yxya1         196 -EEAKKINDLGVAGIVVGGAIT  216 (230)
T ss_dssp             -HHHHHHHTTCCSEEEECHHHH
T ss_pred             -HHHHHHHHcCCCEEEEChhhc
Confidence             57777889999999999 555

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.95  E-value=0.011  Score=44.11  Aligned_cols=100  Identities=11%  Similarity=-0.048  Sum_probs=65.1

Q ss_pred             HHHHHHcCCCEEEecCCCCCCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEE
Q psy7930          22 ALAAVRGGADRLELCAALSEGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFV  100 (146)
Q Consensus        22 a~~A~~~GAdRIELc~~l~~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~V  100 (146)
                      +..|.+.|++.||+-..+.   .+| ....+++..+..++++.... |  .+++.-.....+.+++-++.++++|++.++
T Consensus        25 l~~~a~~G~dgIEi~~~~~---~~~~~~~~l~~~~~~~GL~i~~~~-~--~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~   98 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELF---AGPPDTEALTAAIQLQGLECVFSS-P--LELWREDGQLNPELEPTLRRAEACGAGWLK   98 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGC---SSCCCHHHHHHHHHHTTCEEEEEE-E--EEEECTTSSBCTTHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhCCCEEEEecccC---CCcchHHHHHHHHHHcCCEEEEec-c--cccccCchhhHHHHHHHHHHHHHhCCCEEE
Confidence            5678899999999965432   234 36677777777888875432 2  112222222335577889999999999999


Q ss_pred             EeeecCCCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930         101 IGALTGEQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus       101 fG~L~~dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      +..-....   .+.++++.+.|+  |+.+.+|
T Consensus        99 ~~~g~~~~---~~~l~~l~~~a~~~Gv~l~iE  127 (250)
T d1yx1a1          99 VSLGLLPE---QPDLAALGRRLARHGLQLLVE  127 (250)
T ss_dssp             EEEECCCS---SCCHHHHHHHHTTSSCEEEEE
T ss_pred             Eeecccch---hHHHHHHHHHHHHcCCEEEEE
Confidence            87654432   234667777776  5556655

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.77  E-value=0.17  Score=37.41  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=69.6

Q ss_pred             CHHH-HHHHHHcCCCEEEecCCCC----CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcc-cCHHHHHHHHHHHHHH
Q psy7930          18 SVAS-ALAAVRGGADRLELCAALS----EGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFV-FSQAEKEIMALDCHQF   91 (146)
Q Consensus        18 s~~~-a~~A~~~GAdRIELc~~l~----~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~-Ys~~E~~~M~~dI~~~   91 (146)
                      ++++ +..|.+.|.|-|||.....    ..+.  ...-+++..+..++++.. +-+  .++|. ++++..+..++-|+.+
T Consensus        19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~--~~~~~k~~l~~~gl~i~~-l~~--~~~~~~~~~~~~~~~~~~i~~a   93 (271)
T d2q02a1          19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDL--NYNQVRNLAEKYGLEIVT-INA--VYPFNQLTEEVVKKTEGLLRDA   93 (271)
T ss_dssp             CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTC--CHHHHHHHHHHTTCEEEE-EEE--ETTTTSCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCEEEEecCcccccccccC--CHHHHHHHHHHcCCcEEE-eec--ccccCCCCHHHHHHHHHHHHHH
Confidence            3444 6678889999999965322    1222  245677777777887644 333  23342 3466778888889999


Q ss_pred             HHcCCCEEEEeeecCCCCcC----HHHHHHHHHHhCCCCeEEe
Q psy7930          92 VESGADGFVIGALTGEQEID----IEFIRQLKTIIGDRPITFH  130 (146)
Q Consensus        92 ~~~GadG~VfG~L~~dg~iD----~~~~~~Li~~a~~~~vtFH  130 (146)
                      +++|++-+++..-......+    .+.+++|.+.|....+++.
T Consensus        94 ~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~  136 (271)
T d2q02a1          94 QGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGL  136 (271)
T ss_dssp             HHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             HHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCeEEE
Confidence            99999999886443322222    4566777788775555544

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=95.20  E-value=0.089  Score=38.96  Aligned_cols=108  Identities=14%  Similarity=0.022  Sum_probs=71.4

Q ss_pred             HHHHHHHHcCCCEEEecCCC--CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccC-----HHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAAL--SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFS-----QAEKEIMALDCHQFV   92 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l--~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys-----~~E~~~M~~dI~~~~   92 (146)
                      +....|.+.|.+-|||...-  ....-.-+...+++..+..++++..+-.+   .+|...     +.-++.+++-|+.++
T Consensus        18 ~~l~~a~~~Gf~~IEl~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~a~   94 (278)
T d1i60a_          18 LDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNAL---VFFNNRDEKGHNEIITEFKGMMETCK   94 (278)
T ss_dssp             HHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEE---ECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCEEEeCCccccccccCcccHHHHHHHHHHcCCcEEEEecC---CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            55677889999999997421  00011224666777777778888776555   234443     345678889999999


Q ss_pred             HcCCCEEEEeeecCCCCcC--------HHHHHHHHHHhC--CCCeEEe
Q psy7930          93 ESGADGFVIGALTGEQEID--------IEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        93 ~~GadG~VfG~L~~dg~iD--------~~~~~~Li~~a~--~~~vtFH  130 (146)
                      ++|+..+++..-.......        .+.++++.+.|+  |+.+.++
T Consensus        95 ~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE  142 (278)
T d1i60a_          95 TLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALE  142 (278)
T ss_dssp             HHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred             HcCCCccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCeeeee
Confidence            9999999986543332222        245667777776  6777774

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.47  E-value=0.1  Score=38.21  Aligned_cols=79  Identities=24%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             cceeEEEecCHHHHHHHHHcCCCEEEecCCCC---CCCCCC-CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           9 KTTLEVCVDSVASALAAVRGGADRLELCAALS---EGGLTP-TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         9 ~~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~---~GGlTP-S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      +.++=.++.|.+++..|.+.|+|-+=+-.-..   -.+..| ....++.+.+..++||+++     ||=   |.      
T Consensus        99 ~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~Ai-----GGI---~~------  164 (206)
T d1xi3a_          99 NLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAI-----GGI---NK------  164 (206)
T ss_dssp             TSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEE-----SSC---CT------
T ss_pred             ccccccccCCHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEE-----CCC---CH------
Confidence            34566899999999999999999998765321   123333 4678888888899999875     441   11      


Q ss_pred             HHHHHHHHHcCCCEEEEe
Q psy7930          85 ALDCHQFVESGADGFVIG  102 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG  102 (146)
                       .++..+.+.|++||.+.
T Consensus       165 -~ni~~~~~~Ga~gvAvi  181 (206)
T d1xi3a_         165 -DNAREVLKTGVDGIAVI  181 (206)
T ss_dssp             -TTHHHHHTTTCSEEEES
T ss_pred             -HHHHHHHHhCCCEEEEh
Confidence             25788899999999664

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=94.28  E-value=0.099  Score=39.88  Aligned_cols=100  Identities=24%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             HHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh---hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          21 SALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR---LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        21 ~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~---~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      ++..|.+.|||=+=+--.+...+-.-....+.++.+   ..++|+.+|+-| |++.-.. +..-+....-++.+.++|||
T Consensus        95 sve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p-~g~~~~~-~~~~~~v~~aaria~ElGaD  172 (251)
T d1ojxa_          95 SVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYP-RGGKVVN-ETAPEIVAYAARIALELGAD  172 (251)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECC-CSTTCCC-TTCHHHHHHHHHHHHHHTCS
T ss_pred             CHHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEee-cCCcccc-CCCHHHHHHHHHHHHHhCCC
Confidence            455678999998766655432221112223333332   238999999999 8875432 33345677889999999998


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHhCCCCe
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTIIGDRPI  127 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a~~~~v  127 (146)
                      =+=.     .-.-|.+...+.++.+.+.|+
T Consensus       173 ivK~-----~~p~~~~~~~~~v~~a~~~pv  197 (251)
T d1ojxa_         173 AMKI-----KYTGDPKTFSWAVKVAGKVPV  197 (251)
T ss_dssp             EEEE-----CCCSSHHHHHHHHHHTTTSCE
T ss_pred             EEEe-----cCCCcHHHHHHHHHhcCCCce
Confidence            4322     233344455555555544443

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.01  E-value=0.0073  Score=44.67  Aligned_cols=83  Identities=20%  Similarity=0.202  Sum_probs=55.9

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC-CcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL-VPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~-ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      ..+||-|+|++++..|.+.|||+|= ++|+       |+..++++.+..+ ..=.+.|-- .|| -.-         +.|
T Consensus        80 ~~I~VEv~s~~q~~~a~~~~~diIm-LDN~-------sp~~~k~~v~~~~~~~~~i~lEa-SGg-I~~---------~ni  140 (169)
T d1qpoa1          80 LPCEVEVDSLEQLDAVLPEKPELIL-LDNF-------AVWQTQTAVQRRDSRAPTVMLES-SGG-LSL---------QTA  140 (169)
T ss_dssp             SCEEEEESSHHHHHHHGGGCCSEEE-EETC-------CHHHHHHHHHHHHHHCTTCEEEE-ESS-CCT---------TTH
T ss_pred             CceEEEeccHHHhhhhhhcCCcEEE-ecCc-------ChHhHHHHHHHhhccCCeeEEEE-eCC-CCH---------HHH
Confidence            4789999999999999999999885 5665       3345554443221 100123333 344 221         458


Q ss_pred             HHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          89 HQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        89 ~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      ..+.+.|+|.++.|.||-. ..+|
T Consensus       141 ~~ya~~GvD~IS~galt~sa~~lD  164 (169)
T d1qpoa1         141 ATYAETGVDYLAVGALTHSVRVLD  164 (169)
T ss_dssp             HHHHHTTCSEEECGGGTSSBCCCC
T ss_pred             HHHHHcCCCEEECCccccCCCccC
Confidence            8899999999999999875 4455

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.0052  Score=45.63  Aligned_cols=81  Identities=28%  Similarity=0.301  Sum_probs=53.2

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhC---CCcEEEEEccCCCCCcccCHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLV---LVPVFVMIRVRAGFDFVFSQAEKEIMAL   86 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~---~ipv~vMIRP~R~gdF~Ys~~E~~~M~~   86 (146)
                      ..+||=|+|++++..|.+.|||+|= ++|     .+|  ..++++.+.+   + | .+.|-. .|| -.-         +
T Consensus        79 ~~I~VEv~~~~e~~~a~~~g~d~i~-LDn-----~~p--e~~k~~~~~lk~~~-~-~i~lEa-SGG-I~~---------~  137 (170)
T d1o4ua1          79 TKIEVEVENLEDALRAVEAGADIVM-LDN-----LSP--EEVKDISRRIKDIN-P-NVIVEV-SGG-ITE---------E  137 (170)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEE-EES-----CCH--HHHHHHHHHHHHHC-T-TSEEEE-EEC-CCT---------T
T ss_pred             ceEEEEeCcHHHHHHHHhcCccEEE-EcC-----cCh--hhHhHHHHHHHhhC-C-cEEEEE-ECC-CCH---------H
Confidence            3578889999999999999999875 444     344  4555443322   2 1 123333 333 221         4


Q ss_pred             HHHHHHHcCCCEEEEeeecCC-CCcC
Q psy7930          87 DCHQFVESGADGFVIGALTGE-QEID  111 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~d-g~iD  111 (146)
                      .|..+.+.|+|.++.|.|+-+ ..+|
T Consensus       138 ni~~~a~~GVD~Is~g~lt~~a~~~D  163 (170)
T d1o4ua1         138 NVSLYDFETVDVISSSRLTLQEVFVD  163 (170)
T ss_dssp             TGGGGCCTTCCEEEEGGGTSSCCCCC
T ss_pred             HHHHHHHcCCCEEEcCccccCCCCcc
Confidence            566788899999999999864 3445

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.93  E-value=0.078  Score=38.97  Aligned_cols=76  Identities=28%  Similarity=0.335  Sum_probs=55.4

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCH   89 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~   89 (146)
                      ..+||-|+|++++..|.+.|||+|=| +|     .+|  ..++++.+..+-.  +.|-- .|| -         -.+.|.
T Consensus        80 ~~IeVEv~~~~~~~~a~~~g~diImL-DN-----~~p--e~~~~av~~i~~~--~~lEa-SGg-I---------~~~ni~  138 (167)
T d1qapa1          80 VPVEVEVENLDELDDALKAGADIIML-DN-----FNT--DQMREAVKRVNGQ--ARLEV-SGN-V---------TAETLR  138 (167)
T ss_dssp             SCEEEEESSHHHHHHHHHTTCSEEEE-SS-----CCH--HHHHHHHHTTCTT--CCEEE-CCC-S---------CHHHHH
T ss_pred             ceEEEecCcHHHHHHHHhcCCcEEEe-cC-----CCH--HHHHHHHHhcCCc--eEEEE-eCC-C---------CHHHHH
Confidence            47899999999999999999999855 44     344  5666666655321  22333 344 2         236788


Q ss_pred             HHHHcCCCEEEEeeecC
Q psy7930          90 QFVESGADGFVIGALTG  106 (146)
Q Consensus        90 ~~~~~GadG~VfG~L~~  106 (146)
                      .+.+.|+|.++.|.||-
T Consensus       139 ~ya~~GVD~IS~galt~  155 (167)
T d1qapa1         139 EFAETGVDFISVGALTK  155 (167)
T ss_dssp             HHHHTTCSEEECSHHHH
T ss_pred             HHHHcCCCEEECCcccC
Confidence            99999999999999974

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.70  E-value=0.21  Score=36.62  Aligned_cols=109  Identities=15%  Similarity=-0.043  Sum_probs=68.9

Q ss_pred             HHHHHHHHcCCCEEEecCC-CCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCC--CCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          20 ASALAAVRGGADRLELCAA-LSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAG--FDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~-l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~--gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +.+..|.+.|-+-|||-.. +.....+ -+..-++...+..++++..+--+ ..  .+-.-....++.+++-++.++.+|
T Consensus        19 e~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~A~~lG   97 (275)
T d2g0wa1          19 KRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYI-TQWGTAEDRTAEQQKKEQTTFHMARLFG   97 (275)
T ss_dssp             HHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECB-CCCSSTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceEEEeec-cccCCCchhHHHHHHHHHHHHHHHHHhC
Confidence            4556889999999998531 1100011 13456666777789987666544 21  111112456888999999999999


Q ss_pred             CCEEEEeeecCCC-CcCHHHHHHHHHHhCCCCeEE
Q psy7930          96 ADGFVIGALTGEQ-EIDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        96 adG~VfG~L~~dg-~iD~~~~~~Li~~a~~~~vtF  129 (146)
                      ++.|++|.-.... .--.++++++.+.++++.+.+
T Consensus        98 ~~~v~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l  132 (275)
T d2g0wa1          98 VKHINCGLLEKIPEEQIIVALGELCDRAEELIIGL  132 (275)
T ss_dssp             CCEEEECCCSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred             CceEecCCCCchHHHHHHHHHHHHHHHHHhcCeeE
Confidence            9999999754332 122345667777787655443

>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Bacterial beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=93.64  E-value=0.051  Score=45.50  Aligned_cols=71  Identities=8%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             CCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeee----cC--CCCcCHHHHHHHHHHhC--CCCeEEe
Q psy7930          59 LVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGAL----TG--EQEIDIEFIRQLKTIIG--DRPITFH  130 (146)
Q Consensus        59 ~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L----~~--dg~iD~~~~~~Li~~a~--~~~vtFH  130 (146)
                      ++||+||+=-  .-  +-.-...+.+++|++.+|++|++||.+++=    -+  .|..|..-.++|++.++  |+++--=
T Consensus        10 ~~~v~VmlPL--d~--v~~~~~~~~~~~~L~~LK~aGV~gV~vdVwWGivE~~~Pg~Ydws~yd~l~~mv~~~GLKi~vv   85 (417)
T d1vema2          10 DYKAYLMAPL--KK--IPEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPI   85 (417)
T ss_dssp             TCEEEEECCS--SC--GGGTSCHHHHHHHHHHHHHTTEEEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEEeec--cc--ccccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCccCcHHHHHHHHHHHHcCCeEEEE
Confidence            6899999854  11  112334578999999999999999999764    43  58999999999999987  6665444


Q ss_pred             ecc
Q psy7930         131 RAF  133 (146)
Q Consensus       131 RAF  133 (146)
                      ++|
T Consensus        86 msf   88 (417)
T d1vema2          86 IST   88 (417)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            445

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.91  E-value=0.24  Score=38.07  Aligned_cols=72  Identities=26%  Similarity=0.308  Sum_probs=48.4

Q ss_pred             HHHHHHHHcCCCEEEecCCCCC-C---------CCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSE-G---------GLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALD   87 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~-G---------GlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~d   87 (146)
                      +-+..+++.|||=|||+-+-.. .         +..|  ...+++.+++.+++||.|=|.| ...+    ..      .=
T Consensus       120 ~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~-~~~~----~~------~i  188 (312)
T d1gtea2         120 ELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP-NVTD----IV------SI  188 (312)
T ss_dssp             HHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS-CSSC----HH------HH
T ss_pred             HHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccc-cchh----HH------HH
Confidence            3466678889999999853211 1         2344  3456677777789999999999 4332    11      22


Q ss_pred             HHHHHHcCCCEEEEe
Q psy7930          88 CHQFVESGADGFVIG  102 (146)
Q Consensus        88 I~~~~~~GadG~VfG  102 (146)
                      ++.+++.|+|||++.
T Consensus       189 ~~~~~~~g~~gi~~~  203 (312)
T d1gtea2         189 ARAAKEGGADGVTAT  203 (312)
T ss_dssp             HHHHHHHTCSEEEEC
T ss_pred             HHHHHHhcccceEEE
Confidence            456778999999863

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.34  E-value=0.71  Score=35.56  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCC-CCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHc
Q psy7930          16 VDSVASALAAVRGGADRLELCAAL-SEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVES   94 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l-~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~   94 (146)
                      -.++.+.....++||.=|-.+..- ..||   |+..++.+++.+++||-   |=    ||.-++.       .|...+.+
T Consensus        62 ~~d~~~~a~~~~~gA~aiSVLTd~~~F~G---s~~dl~~v~~~~~~PiL---rK----DFIid~~-------QI~ea~~~  124 (247)
T d1a53a_          62 ERDPIEYSKFMERYAVGLSILTEEKYFNG---SYETLRKIASSVSIPIL---MK----DFIVKES-------QIDDAYNL  124 (247)
T ss_dssp             CCCHHHHHHHHTTTCSEEEEECCCTTTCC---CHHHHHHHHHHCCSCEE---EE----SCCCSHH-------HHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCCeEEEecCcccccc---chHHHHHHHhcccccee---ec----ccccChH-------HHHHHHHh
Confidence            346667667788999999877643 4567   88999999999999973   54    7999876       46678999


Q ss_pred             CCCEEEEeeecCCCCcCHHHHHHHHHHhCC
Q psy7930          95 GADGFVIGALTGEQEIDIEFIRQLKTIIGD  124 (146)
Q Consensus        95 GadG~VfG~L~~dg~iD~~~~~~Li~~a~~  124 (146)
                      |||+|.+=+    .-++.+.+++|++.|+.
T Consensus       125 GADaiLLI~----~~L~~~~l~~l~~~a~~  150 (247)
T d1a53a_         125 GADTVLLIV----KILTERELESLLEYARS  150 (247)
T ss_dssp             TCSEEEEEG----GGSCHHHHHHHHHHHHT
T ss_pred             hcchhhhhh----hhccHHHHHHHHHHHHH
Confidence            999987532    23567899999999973

>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: alpha-D-glucuronidase/Hyaluronidase catalytic domain
domain: Glucosaminidase GH84, catalytic domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=91.98  E-value=0.25  Score=39.19  Aligned_cols=48  Identities=13%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             hhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeecCC
Q psy7930          56 RLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGFVIGALTGE  107 (146)
Q Consensus        56 ~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d  107 (146)
                      +..+|-+..-|-|  |-||.|+.+|++.+++=++.+.++|++.|.+  |=+|
T Consensus        70 ~~~~i~f~~~isP--Gld~~~~~~d~~~L~~K~~ql~~~Gv~~fai--lfDD  117 (310)
T d2choa2          70 NENEVDFVWAIHP--GQDIKWNKEDRDLLLAKFEKMYQLGVRSFAV--FFDD  117 (310)
T ss_dssp             HHTTCEEEEEECC--TTTCCSSHHHHHHHHHHHHHHHHTTCCEEEE--ECCS
T ss_pred             HHcCCeEEEEeCC--CccccCCHHHHHHHHHHHHHHHHcCCCEEEE--eecc
Confidence            3458999999999  9999999999999999999999999999655  5555

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=91.36  E-value=0.68  Score=35.85  Aligned_cols=88  Identities=18%  Similarity=0.221  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCC
Q psy7930          18 SVASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGA   96 (146)
Q Consensus        18 s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Ga   96 (146)
                      ++++.....++||+=|-.... -..||   |+..++.+++.+++||   +|=    ||..++.+       |...+.+||
T Consensus        62 d~~~~a~~ye~GA~aiSVLTd~~~F~G---s~~~l~~vr~~~~~Pi---LrK----DFIid~~Q-------I~ea~~~GA  124 (251)
T d1i4na_          62 SLEDFIRMYDELADAISILTEKHYFKG---DPAFVRAARNLTCRPI---LAK----DFYIDTVQ-------VKLASSVGA  124 (251)
T ss_dssp             CHHHHHHHHHHHCSEEEEECCCSSSCC---CTHHHHHHHTTCCSCE---EEE----CCCCSTHH-------HHHHHHTTC
T ss_pred             cHHHHHHHHhcCCcceEEecccCCCCC---CHHHHHHHhhcccCch---hhh----hhhhCHHH-------HHHHHhhcc
Confidence            455666666789999987764 34677   6789999999999995   555    79999765       456889999


Q ss_pred             CEEEEeeecCCCCcCHHHHHHHHHHhC--CCC
Q psy7930          97 DGFVIGALTGEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        97 dG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      |.|.+=+    .-++.+.+++|++.|.  ||.
T Consensus       125 DaiLLI~----~~L~~~~l~~l~~~a~~lgle  152 (251)
T d1i4na_         125 DAILIIA----RILTAEQIKEIYEAAEELGMD  152 (251)
T ss_dssp             SEEEEEG----GGSCHHHHHHHHHHHHTTTCE
T ss_pred             ceEEeec----ccccHHHHHHHHHHHHHhCCe
Confidence            9986532    1356778999999998  454

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.20  E-value=1.4  Score=32.99  Aligned_cols=90  Identities=19%  Similarity=0.148  Sum_probs=69.2

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +-+....+.|+..|=+.+=-..|=++ |...+++.+++..++|+.+     .|| .. +       .+|++.+++.|++|
T Consensus       157 ~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~~~pii~-----~GG-v~-~-------~~di~~l~~~g~~g  222 (252)
T d1h5ya_         157 KWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIA-----SGG-AG-R-------VEHFYEAAAAGADA  222 (252)
T ss_dssp             HHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEE-----ESC-CC-S-------HHHHHHHHHTTCSE
T ss_pred             HHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhcCCCEEE-----ecC-CC-C-------HHHHHHHHHCCCCE
Confidence            44567889999999777655556444 7899999999999999853     344 22 1       36788888999999


Q ss_pred             EEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          99 FVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        99 ~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +++|-+=-.|.++.+.+++.+...+
T Consensus       223 v~~gs~l~~~~~~~~~lk~~l~~~~  247 (252)
T d1h5ya_         223 VLAASLFHFRVLSIAQVKRYLKERG  247 (252)
T ss_dssp             EEESHHHHTTSSCHHHHHHHHHHTT
T ss_pred             EEEhhHHHcCCCCHHHHHHHHHHcC
Confidence            9999776789999999998876543

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=90.09  E-value=1.4  Score=33.31  Aligned_cols=119  Identities=16%  Similarity=0.104  Sum_probs=72.0

Q ss_pred             eeEEEecCHHHH----HHHHHcCCCEEEecCCCCCCCCCCC--HHHHHHHHhhC-CCcEEEEEccCC-CCCcccCHHHHH
Q psy7930          11 TLEVCVDSVASA----LAAVRGGADRLELCAALSEGGLTPT--LGLYRVIKRLV-LVPVFVMIRVRA-GFDFVFSQAEKE   82 (146)
Q Consensus        11 ~lEvcv~s~~~a----~~A~~~GAdRIELc~~l~~GGlTPS--~g~i~~~~~~~-~ipv~vMIRP~R-~gdF~Ys~~E~~   82 (146)
                      .+-+...+.+++    ..+...|||=||+.-.+-.+=.++.  ...++.+++.. ++|+.+-+|++. ||-|.-++++.-
T Consensus        19 cv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   98 (252)
T d1gqna_          19 IVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYL   98 (252)
T ss_dssp             EEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHH
Confidence            333444555554    5566789999999987655322221  12334444444 699999999733 566777776655


Q ss_pred             HHHHHHHHHHHcC-CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC--eEEeecccCCCC
Q psy7930          83 IMALDCHQFVESG-ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP--ITFHRAFDVVRE  138 (146)
Q Consensus        83 ~M~~dI~~~~~~G-adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~--vtFHRAFD~~~d  138 (146)
                      .+   ++.+.++| +|-+     +=+-..+.+...++++.++  +..  +.+| =|+.+++
T Consensus        99 ~l---l~~~~~~~~~d~i-----DiEl~~~~~~~~~li~~a~~~~~~vI~S~H-df~~TP~  150 (252)
T d1gqna_          99 TL---NRAAIDSGLVDMI-----DLELFTGDADVKATVDYAHAHNVYVVMSNH-DFHQTPS  150 (252)
T ss_dssp             HH---HHHHHHHSCCSEE-----EEEGGGCHHHHHHHHHHHHHTTCEEEEEEE-ESSCCCC
T ss_pred             HH---HHHHHHcCCCceE-----eccccccHHHHHHHHHHhhcCCCeEEEEec-CCCCCCC
Confidence            43   34555667 5644     3234456677888888875  343  4455 4777764

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=89.65  E-value=0.38  Score=35.72  Aligned_cols=83  Identities=22%  Similarity=0.199  Sum_probs=53.5

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCCCC-CCCCCHHHHHHH-------Hhh-CCCcEEEEEccCCCCCcccCHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALSEG-GLTPTLGLYRVI-------KRL-VLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~~G-GlTPS~g~i~~~-------~~~-~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      +..=+|+.+.+++..+.+.+.+-|=.----+.| |.+|+....+.+       ++. .++||.+      || =+.++  
T Consensus       115 l~~ivcvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~~~~~~i~~~i~~~~~~~~~i~vly------gG-gV~~~--  185 (226)
T d1w0ma_         115 LDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFPEVSVIT------GA-GIESG--  185 (226)
T ss_dssp             CEEEEEESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEE------ES-SCCSH--
T ss_pred             CEEEEecCchHHhhhhhccccceeeecchhhccCCCCCChhhhhHhhhhhhhhhccCCCceEEE------ec-CcCCh--
Confidence            334479999999999999999887665433443 666665433332       222 2566532      33 24443  


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe--eecC
Q psy7930          81 KEIMALDCHQFVESGADGFVIG--ALTG  106 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG--~L~~  106 (146)
                           +|...+.+.|+|||.+|  .|+.
T Consensus       186 -----n~~~~~~~~g~dGvLVGsA~l~a  208 (226)
T d1w0ma_         186 -----DDVAAALRLGTRGVLLASAAVKA  208 (226)
T ss_dssp             -----HHHHHHHHTTCSEEEECHHHHTC
T ss_pred             -----HHHHHHhcCCCCEEEechheecC
Confidence                 55667778999999999  5553

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.35  E-value=1  Score=33.26  Aligned_cols=94  Identities=19%  Similarity=0.311  Sum_probs=61.7

Q ss_pred             ceeEEEecCHHHHHHHHHcCCCEEEecCCCC---CCCCCC--CHHHHHHHHh-hCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          10 TTLEVCVDSVASALAAVRGGADRLELCAALS---EGGLTP--TLGLYRVIKR-LVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        10 ~~lEvcv~s~~~a~~A~~~GAdRIELc~~l~---~GGlTP--S~g~i~~~~~-~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .++=+++.|.+++..|.+.|||-|=+-.-..   --+..|  ...+++.+++ ..++||+++     ||= .  .     
T Consensus       116 ~iig~S~h~~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~Ai-----GGI-~--~-----  182 (226)
T d2tpsa_         116 MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGI-----GGI-T--I-----  182 (226)
T ss_dssp             SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEE-----SSC-C--T-----
T ss_pred             eeeeeeccchHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEe-----cCC-C--H-----
Confidence            4677889999999999999999997654221   113222  3556777764 568999886     441 1  1     


Q ss_pred             HHHHHHHHHHcCCCEEEE-eeecCCCCcCH-HHHHHHHH
Q psy7930          84 MALDCHQFVESGADGFVI-GALTGEQEIDI-EFIRQLKT  120 (146)
Q Consensus        84 M~~dI~~~~~~GadG~Vf-G~L~~dg~iD~-~~~~~Li~  120 (146)
                        +++..+.++|++||.+ +.+....  |. .+++++.+
T Consensus       183 --~ni~~l~~~Ga~giAvis~I~~a~--dp~~~~~~~~~  217 (226)
T d2tpsa_         183 --DNAAPVIQAGADGVSMISAISQAE--DPESAARKFRE  217 (226)
T ss_dssp             --TTSHHHHHTTCSEEEESHHHHTSS--CHHHHHHHHHH
T ss_pred             --HHHHHHHHhCCCEEEEhHHhhcCC--CHHHHHHHHHH
Confidence              3678889999999987 4454322  33 34444444

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=89.00  E-value=0.15  Score=36.94  Aligned_cols=45  Identities=13%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEeee------cCCCCcCHHHHHHHHHHhC--CCC
Q psy7930          82 EIMALDCHQFVESGADGFVIGAL------TGEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        82 ~~M~~dI~~~~~~GadG~VfG~L------~~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      +..++|++.+|++|++-+=|+++      .+.|+.|.+...++++.++  |+.
T Consensus        14 ~~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~~~~d~~i~~~~~~Gi~   66 (393)
T d1kwga2          14 ERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWGWLDEAIATLAAEGLK   66 (393)
T ss_dssp             HHHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCCHHHHHHHHHHHTTTCE
T ss_pred             HHHHHHHHHHHHcCCCEEEecccchhhcCCCCCccCHHHHHHHHHHHHHCCCE
Confidence            46899999999999999999975      4579999999999999997  454

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.23  E-value=0.15  Score=39.36  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=52.7

Q ss_pred             HHHHHHHHcCCCEEEe---------------cC---CCCCCCCCC--CHHHHHHHHhhCCCcEEEEEccCCCCCcccCHH
Q psy7930          20 ASALAAVRGGADRLEL---------------CA---ALSEGGLTP--TLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        20 ~~a~~A~~~GAdRIEL---------------c~---~l~~GGlTP--S~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      .++..+.+.|||=|||               -+   +|. -|+|.  -..+++.+++..++|+..|---  ..-|.|.-+
T Consensus        22 ~~~l~~l~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~-~G~~~~~~~~~~~~~r~~~~~pivlm~Y~--N~i~~~G~~   98 (248)
T d1geqa_          22 LNFLLALDEYAGAIELGIPFSDPIADGKTIQESHYRALK-NGFKLREAFWIVKEFRRHSSTPIVLMTYY--NPIYRAGVR   98 (248)
T ss_dssp             HHHHHHHGGGBSCEEEECCCSCCTTSCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTTCCCCEEEEECH--HHHHHHCHH
T ss_pred             HHHHHHHHcCCCEEEECCCCCCccccCHHHHHhhhHHHh-CCccHHHHHHHHHHHhhcCCCcEEEEecc--ccccccCHH
Confidence            3556666789999999               22   233 34444  3567888888889999999742  113555544


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeec
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGALT  105 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L~  105 (146)
                      +|      ++.+++.|+||+.+-=|-
T Consensus        99 ~f------~~~~~~~Gv~GliipDLP  118 (248)
T d1geqa_          99 NF------LAEAKASGVDGILVVDLP  118 (248)
T ss_dssp             HH------HHHHHHHTCCEEEETTCC
T ss_pred             HH------hhhhcccCeeEEeccCCc
Confidence            44      668899999999886553

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=87.98  E-value=1.2  Score=33.28  Aligned_cols=101  Identities=11%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhh-CCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRL-VLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~-~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      +.+..+.+.|+.++=+.++.... .+-....+.++.+. ....+.+.+++     +.-+.++       ++.++++|++.
T Consensus        80 ~~~~~~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~l~~e~-------l~~lk~aG~~~  146 (312)
T d1r30a_          80 ESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTL-----GTLSESQ-------AQRLANAGLDY  146 (312)
T ss_dssp             HHHHHHHHTTCSEEEEEECCSSC-CTTTHHHHHHHHHHHHHTTSEEEEEC-----SSCCHHH-------HHHHHHHCCCE
T ss_pred             HHHHHHHHcCCEEEEEccCCCCC-chhhHHHHHHHHHhcccccceeeecc-----ccchHHH-------HHHhhccccee
Confidence            55677788999999776532111 11224444444333 24566677777     2334443       56688999999


Q ss_pred             EEEeeecCC-------CCcCHHHHHHHHHHhC--CCCeEEeecc
Q psy7930          99 FVIGALTGE-------QEIDIEFIRQLKTIIG--DRPITFHRAF  133 (146)
Q Consensus        99 ~VfG~L~~d-------g~iD~~~~~~Li~~a~--~~~vtFHRAF  133 (146)
                      +-+|.-+.+       ...+.+...+.++.|+  |++++.|.-|
T Consensus       147 i~~~iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~  190 (312)
T d1r30a_         147 YNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV  190 (312)
T ss_dssp             EECCCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEE
T ss_pred             EecccchhhhhhccCCCCCCHHHHHHHHHHHHHhccceecceEe
Confidence            999986643       2334444444555554  5666655543

>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=87.66  E-value=0.56  Score=39.79  Aligned_cols=73  Identities=22%  Similarity=0.402  Sum_probs=53.7

Q ss_pred             CCCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeec--CCCCcCHHHHHHHHHHhC--CCC
Q psy7930          58 VLVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALT--GEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        58 ~~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~--~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      .-|||+||+=-   ...+.|    ..-+.|..+++.+|.+|+|||.+    |+.-  ..++-|...=++|.+.++  +++
T Consensus         4 ~~VpVyVMlPLd~V~~~~~~----~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLK   79 (500)
T d1b1ya_           4 NYVQVYVMLPLDAVSVNNRF----EKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLK   79 (500)
T ss_dssp             GCCEEEEECCTTSSCTTSCC----CTHHHHHHHHHHHHHTTCCEEEEEEETTTGGGGSTTCCCCHHHHHHHHHHHHHTCE
T ss_pred             CceeEEEEeecceecCCCee----cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCccCcHHHHHHHHHHHHcCCe
Confidence            35899999853   022322    24578999999999999999998    5454  367899999999999987  666


Q ss_pred             eEEeeccc
Q psy7930         127 ITFHRAFD  134 (146)
Q Consensus       127 vtFHRAFD  134 (146)
                      +.-=+.|-
T Consensus        80 lq~vmSFH   87 (500)
T d1b1ya_          80 LQAIMSFH   87 (500)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEeec
Confidence            55444553

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.63  E-value=0.37  Score=35.79  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=70.0

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHH--HHHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAE--KEIMALDCHQFVE   93 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E--~~~M~~dI~~~~~   93 (146)
                      +.|.+++....+.||+||=+.+.     +-....+++++.+..+-.+.|-+=. +.+.+.+....  -......++.+.+
T Consensus        83 Irs~~~~~~ll~~Ga~kVvi~s~-----~~~~~~~~~~~~~~~g~~~vv~~d~-~~~~~~~~g~~~~~~~~~~~~~~~~~  156 (239)
T d1vzwa1          83 IRDDDTLAAALATGCTRVNLGTA-----ALETPEWVAKVIAEHGDKIAVGLDV-RGTTLRGRGWTRDGGDLYETLDRLNK  156 (239)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECHH-----HHHCHHHHHHHHHHHGGGEEEEEEE-ETTEECCSSSCCCCCBHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhHH-----hhhccccchhhhccCCceeeeeecc-ceeeecCccceeeccccchhhhhhhh
Confidence            35889999999999999999874     3356778888877665455555545 44444332100  0011235677788


Q ss_pred             cCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          94 SGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        94 ~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      .|+..|++=-++.||+   +|.+.++.+.+.. +.|++.
T Consensus       157 ~g~~eii~tdi~~dGt~~G~d~~l~~~i~~~~-~~pvi~  194 (239)
T d1vzwa1         157 EGCARYVVTDIAKDGTLQGPNLELLKNVCAAT-DRPVVA  194 (239)
T ss_dssp             TTCCCEEEEEC-------CCCHHHHHHHHHTC-SSCEEE
T ss_pred             ccccEEEEEeecccceecCCcchhhhhhhhcc-CceEEE
Confidence            9999999999999986   7999888876554 566664

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=87.40  E-value=2.4  Score=31.38  Aligned_cols=90  Identities=22%  Similarity=0.188  Sum_probs=68.3

Q ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCCC-CCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCC
Q psy7930          19 VASALAAVRGGADRLELCAALSEGGLT-PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGAD   97 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~l~~GGlT-PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~Gad   97 (146)
                      .+-+...++.|+.++=+.+--..|-.+ |...+++.+.+..++|+.+     .|| -. +-       +|+..+++.|++
T Consensus       154 ~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~~i~~~~~~pii~-----~GG-v~-~~-------~dl~~l~~~g~~  219 (251)
T d1ka9f_         154 VEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIA-----SGG-AG-RM-------EHFLEAFQAGAE  219 (251)
T ss_dssp             HHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEE-----ESC-CC-SH-------HHHHHHHHTTCS
T ss_pred             HHHHHHHHhcCCCEEEEEeecccCccCCcchhHHHHHHhhcceeEEE-----ecC-CC-CH-------HHHHHHHHCCCC
Confidence            355778889999999777644556444 8999999999999999743     355 11 22       467778889999


Q ss_pred             EEEEeeecCCCCcCHHHHHHHHHHh
Q psy7930          98 GFVIGALTGEQEIDIEFIRQLKTII  122 (146)
Q Consensus        98 G~VfG~L~~dg~iD~~~~~~Li~~a  122 (146)
                      |+++|-.=-.|.++.+.+++.+...
T Consensus       220 gviig~al~~g~~~~~~~k~~l~~~  244 (251)
T d1ka9f_         220 AALAASVFHFGEIPIPKLKRYLAEK  244 (251)
T ss_dssp             EEEESHHHHTTSSCHHHHHHHHHHT
T ss_pred             EEEEhHHHHcCCCCHHHHHHHHHHC
Confidence            9999976668999998888777654

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.81  E-value=1  Score=36.27  Aligned_cols=75  Identities=21%  Similarity=0.206  Sum_probs=52.5

Q ss_pred             EEecCHHHHHHHHHcCCCEEEecCCCCCCCCC----------CCHHHHHH---HHhhCCCcEEEEEccCCCCCcccCHHH
Q psy7930          14 VCVDSVASALAAVRGGADRLELCAALSEGGLT----------PTLGLYRV---IKRLVLVPVFVMIRVRAGFDFVFSQAE   80 (146)
Q Consensus        14 vcv~s~~~a~~A~~~GAdRIELc~~l~~GGlT----------PS~g~i~~---~~~~~~ipv~vMIRP~R~gdF~Ys~~E   80 (146)
                      =.|-+++.++...+.|||=|=.-  ...|+..          |-...+..   +.+..++||..      .|++.++   
T Consensus       166 GnVaT~e~a~~L~~aGAD~VkVG--iG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIA------DGGi~~~---  234 (378)
T d1jr1a1         166 GNVVTAAQAKNLIDAGVDALRVG--MGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIA------DGGIQNV---  234 (378)
T ss_dssp             EEECSHHHHHHHHHHTCSEEEEC--SSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEE------ESCCCSH---
T ss_pred             cccccHHHHHHHHHhCCCEEeec--cccccccccccccccCcccchhhhHHHHhhcccCCceec------ccccccC---
Confidence            35667888999999999987543  3445443          33434433   33455788742      4668877   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEeee
Q psy7930          81 KEIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        81 ~~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                           .||..+..+|||+|.+|-+
T Consensus       235 -----gdiakAla~GAd~VMmGs~  253 (378)
T d1jr1a1         235 -----GHIAKALALGASTVMMGSL  253 (378)
T ss_dssp             -----HHHHHHHHTTCSEEEESTT
T ss_pred             -----CceeeEEEeecceeeecce
Confidence                 7899999999999999965

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=86.77  E-value=2.8  Score=32.35  Aligned_cols=79  Identities=18%  Similarity=0.263  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEc--cCC---CCCccc---CHHHHHHHHHHHHHH
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIR--VRA---GFDFVF---SQAEKEIMALDCHQF   91 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIR--P~R---~gdF~Y---s~~E~~~M~~dI~~~   91 (146)
                      ..+....+.|||-|-|     +|| +--..+++.+.+ .+|||.--|-  |.+   .|+|.-   |.+|-+.+.+|.+.+
T Consensus        96 ~~a~~l~~~GAdaVKl-----Egg-~~~~~~I~~L~~-~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a~~l  168 (262)
T d1m3ua_          96 ENAATVMRAGANMVKI-----EGG-EWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALAL  168 (262)
T ss_dssp             HHHHHHHHTTCSEEEC-----CCS-GGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEe-----ccc-hhHHHHHHHHHH-cCCeEEeehhhchhhhhhcCCccccCccHHHHHHHHHHHHHH
Confidence            4445556789998865     355 233566766654 6899988884  622   144433   789999999999999


Q ss_pred             HHcCCCEEEEeeec
Q psy7930          92 VESGADGFVIGALT  105 (146)
Q Consensus        92 ~~~GadG~VfG~L~  105 (146)
                      .++||.++|+=+..
T Consensus       169 e~AGaf~ivlE~vp  182 (262)
T d1m3ua_         169 EAAGAQLLVLECVP  182 (262)
T ss_dssp             HHHTCCEEEEESCC
T ss_pred             HhhcceEEEEeccc
Confidence            99999999998754

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=86.56  E-value=1.2  Score=34.26  Aligned_cols=17  Identities=41%  Similarity=0.677  Sum_probs=15.0

Q ss_pred             HHHHHHHHcCCCEEEEe
Q psy7930          86 LDCHQFVESGADGFVIG  102 (146)
Q Consensus        86 ~dI~~~~~~GadG~VfG  102 (146)
                      +|++.+++.||||+|+|
T Consensus       213 e~v~~~~~~gaDGvIVG  229 (261)
T d1rd5a_         213 EHVKQIAQWGADGVIIG  229 (261)
T ss_dssp             HHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHhcCCCEEEEC
Confidence            57778888999999999

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=4  Score=31.34  Aligned_cols=89  Identities=15%  Similarity=0.145  Sum_probs=68.1

Q ss_pred             cCHHHHHHHHHcCCCEEEecCC-CCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAA-LSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~-l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      .++..+..-.++||.=|-.... -..||   |...++.+++.+++||   +|=    ||..++.+       |...+.+|
T Consensus        68 ~~p~~~a~~~~~gA~aiSVLTe~~~F~G---s~~~l~~v~~~~~~Pi---LrK----DFIid~~Q-------I~ear~~G  130 (254)
T d1piia2          68 FDPARIAAIYKHYASAISVLTDEKYFQG---SFNFLPIVSQIAPQPI---LCK----DFIIDPYQ-------IYLARYYQ  130 (254)
T ss_dssp             CCHHHHHHHHTTTCSEEEEECCSTTTCC---CTTHHHHHHHHCCSCE---EEE----SCCCSHHH-------HHHHHHTT
T ss_pred             chhHHHHHHHHhccCceEEecccccCCC---CHHHHHHHHhcccccc---chh----cccCcHHH-------HHHHHhhc
Confidence            4567777778899999987764 23455   5678999999999995   565    79999765       45689999


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC--CCC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG--DRP  126 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~  126 (146)
                      ||.|.+=+    .-++.+.+++|++.|+  ||.
T Consensus       131 ADavLLI~----~~L~~~~l~~l~~~a~~lgl~  159 (254)
T d1piia2         131 ADACLLML----SVLDDDQYRQLAAVAHSLEMG  159 (254)
T ss_dssp             CSEEEEET----TTCCHHHHHHHHHHHHHTTCE
T ss_pred             cchhhhhH----hhhcccHHHHHHHHHHHHhhh
Confidence            99987532    2467789999999997  554

>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=86.04  E-value=0.66  Score=39.34  Aligned_cols=73  Identities=23%  Similarity=0.379  Sum_probs=53.3

Q ss_pred             CCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      .+||+||+=-   ...+.+    ..-+.|..+++.+|.+|+|||.+    |+.-.  .++.|...=++|.+.++  |+++
T Consensus        12 yVpVyVMLPLd~V~~~~~~----~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl   87 (498)
T d1fa2a_          12 YVSLYVMLPLGVVNADNVF----PDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKI   87 (498)
T ss_dssp             CCEEEEECCTTSSCSSSCC----CCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEEeecceecCCCcc----CCHHHHHHHHHHHHHcCCcEEEEeeeeeEeecCCCCccCcHHHHHHHHHHHHcCCee
Confidence            5899999854   012222    24678899999999999999998    55543  57899999999999997  6665


Q ss_pred             EEeecccC
Q psy7930         128 TFHRAFDV  135 (146)
Q Consensus       128 tFHRAFD~  135 (146)
                      .-=+.|-+
T Consensus        88 q~vmSFHq   95 (498)
T d1fa2a_          88 QAIMSFHQ   95 (498)
T ss_dssp             EEEEECSC
T ss_pred             EEEEeecc
Confidence            43344433

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.28  E-value=1.3  Score=33.69  Aligned_cols=69  Identities=20%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCCC---------------------CCHHHHHHHHhhC-CCcEEEEEccCCCCCc
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGLT---------------------PTLGLYRVIKRLV-LVPVFVMIRVRAGFDF   74 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGlT---------------------PS~g~i~~~~~~~-~ipv~vMIRP~R~gdF   74 (146)
                      .+.+++..+.+.|||-|-+-..   ||.+                     |+...+..+.... ++||.+-      |+.
T Consensus       170 ~~~~~a~~~~~~GaD~i~v~~~---gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viad------GGI  240 (329)
T d1p0ka_         170 MSKASAGKLYEAGAAAVDIGGY---GGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIAS------GGL  240 (329)
T ss_dssp             CCHHHHHHHHHHTCSEEEEEC------------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEE------SSC
T ss_pred             chHHHHHHHHhcCCCEEEEcCC---CCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEc------CCc
Confidence            6799999999999999988643   4421                     2333344444333 5776552      334


Q ss_pred             ccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          75 VFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        75 ~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .+.        .||..+..+|||.|-+|
T Consensus       241 r~g--------~Dv~KAlalGAdaV~iG  260 (329)
T d1p0ka_         241 QDA--------LDVAKAIALGASCTGMA  260 (329)
T ss_dssp             CSH--------HHHHHHHHTTCSEEEEC
T ss_pred             ccH--------HHHHHHHHcCCCchhcc
Confidence            444        67889999999999998

>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=84.80  E-value=1  Score=38.06  Aligned_cols=73  Identities=21%  Similarity=0.349  Sum_probs=53.2

Q ss_pred             CCcEEEEEcc---CCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEE----eeecC--CCCcCHHHHHHHHHHhC--CCCe
Q psy7930          59 LVPVFVMIRV---RAGFDFVFSQAEKEIMALDCHQFVESGADGFVI----GALTG--EQEIDIEFIRQLKTIIG--DRPI  127 (146)
Q Consensus        59 ~ipv~vMIRP---~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf----G~L~~--dg~iD~~~~~~Li~~a~--~~~v  127 (146)
                      -|||+||+=-   ...+.+    ..-+.|..+++.+|.+|+|||.+    |+.-.  .++.|...=++|.+.++  |+++
T Consensus         6 yVpVyVMlPLd~V~~~~~~----~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl   81 (490)
T d1wdpa1           6 YVPVYVMLPLGVVNVDNVF----EDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTL   81 (490)
T ss_dssp             CCCEEEECCTTSBCTTSCB----CCHHHHHHHHHHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEE
T ss_pred             cccEEEEeecceecCCCcc----cCHHHHHHHHHHHHHcCCcEEEEeeeeeEeecCCCCccChHHHHHHHHHHHHcCCeE
Confidence            4899999853   012222    24678999999999999999998    55543  57899999999999997  6665


Q ss_pred             EEeecccC
Q psy7930         128 TFHRAFDV  135 (146)
Q Consensus       128 tFHRAFD~  135 (146)
                      .-=+.|-+
T Consensus        82 q~vmSFHq   89 (490)
T d1wdpa1          82 QAIMSFHQ   89 (490)
T ss_dssp             EEEEECSC
T ss_pred             EEEEeecc
Confidence            44444443

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=84.73  E-value=2.6  Score=31.50  Aligned_cols=68  Identities=19%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHH-hhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIK-RLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADG   98 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~-~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG   98 (146)
                      ..+..|.+.|||=+-+---      + +...+..+. ....+||.+.-=| .+.    +++|+-.|.+   .+.+.||.|
T Consensus       161 ~aaria~ElGaDivK~~~p------~-~~~~~~~~v~~a~~~pv~~~gG~-~~~----~~~~~l~~~~---~a~~~Ga~G  225 (251)
T d1ojxa_         161 YAARIALELGADAMKIKYT------G-DPKTFSWAVKVAGKVPVLMSGGP-KTK----TEEDFLKQVE---GVLEAGALG  225 (251)
T ss_dssp             HHHHHHHHHTCSEEEECCC------S-SHHHHHHHHHHTTTSCEEEECCS-CCS----SHHHHHHHHH---HHHHTTCCE
T ss_pred             HHHHHHHHhCCCEEEecCC------C-cHHHHHHHHHhcCCCceEEeCCC-CCC----CHHHHHHHHH---HHHHCCCcE
Confidence            4577889999999877421      1 234455444 4557887665445 444    3456655544   455789999


Q ss_pred             EEEe
Q psy7930          99 FVIG  102 (146)
Q Consensus        99 ~VfG  102 (146)
                      +++|
T Consensus       226 ~~~G  229 (251)
T d1ojxa_         226 IAVG  229 (251)
T ss_dssp             EEES
T ss_pred             Eeec
Confidence            9999

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.50  E-value=2.3  Score=33.02  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCCEEEecCC--------------C---CCCCCC-----CCHHHHHHHHhhCCCcEEEEEccCCCCCccc
Q psy7930          19 VASALAAVRGGADRLELCAA--------------L---SEGGLT-----PTLGLYRVIKRLVLVPVFVMIRVRAGFDFVF   76 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~--------------l---~~GGlT-----PS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Y   76 (146)
                      .+.|..|+++|.|-|||-.+              .   .-||.-     -...+++.+++.++-+..|.+|- -+-++.-
T Consensus       144 ~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~-s~~d~~~  222 (330)
T d1ps9a1         144 ARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRL-SMLDLVE  222 (330)
T ss_dssp             HHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEE-EEECCST
T ss_pred             HHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecc-ccccccc
Confidence            36788999999999999542              1   224410     12457778888876666666664 3333332


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEee
Q psy7930          77 SQAEKEIMALDCHQFVESGADGFVIGA  103 (146)
Q Consensus        77 s~~E~~~M~~dI~~~~~~GadG~VfG~  103 (146)
                      ....++.+.+=++.+.+.|+|-+....
T Consensus       223 ~g~~~~~~~~~~~~l~~~g~d~~~~~~  249 (330)
T d1ps9a1         223 DGGTFAETVELAQAIEAAGATIINTGI  249 (330)
T ss_dssp             TCCCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhccc
Confidence            222334444556677888999887654

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=84.38  E-value=2.3  Score=31.70  Aligned_cols=106  Identities=20%  Similarity=0.254  Sum_probs=71.7

Q ss_pred             ecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCC---CcEEEEEccCCCCC-cccCHH-----HHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVL---VPVFVMIRVRAGFD-FVFSQA-----EKEIMAL   86 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~---ipv~vMIRP~R~gd-F~Ys~~-----E~~~M~~   86 (146)
                      +.|.+++....+.||+||=+.+..     -....+++++.+..+   +=+.+=+|. .+++ ++|+..     ++. ..+
T Consensus        85 Ir~~e~~~~ll~~G~~kVii~s~~-----~~~~~~~~~~~~~~G~q~iv~slD~~~-~~~~~~v~~~~~~~~~~~~-~~~  157 (252)
T d1h5ya_          85 VRSLEDATTLFRAGADKVSVNTAA-----VRNPQLVALLAREFGSQSTVVAIDAKW-NGEYYEVYVKGGREATGLD-AVK  157 (252)
T ss_dssp             CCSHHHHHHHHHHTCSEEEESHHH-----HHCTHHHHHHHHHHCGGGEEEEEEEEE-CSSSEEEEETTTTEEEEEE-HHH
T ss_pred             cchhhhhhhHhhcCCcEEEecccc-----cCCcchHHHHHHhcCCCcEEEEEEEEE-cCCcEEEEEeCCeEcCCCC-HHH
Confidence            678999999999999999887642     234567888777653   223333344 3322 344321     000 112


Q ss_pred             HHHHHHHcCCCEEEEeeecCCCC---cCHHHHHHHHHHhCCCCeEE
Q psy7930          87 DCHQFVESGADGFVIGALTGEQE---IDIEFIRQLKTIIGDRPITF  129 (146)
Q Consensus        87 dI~~~~~~GadG~VfG~L~~dg~---iD~~~~~~Li~~a~~~~vtF  129 (146)
                      -++.+.++|+..|++=-++.||+   +|.+.++++.+.. +.|+++
T Consensus       158 ~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~i~~~~-~~pii~  202 (252)
T d1h5ya_         158 WAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSV-RIPVIA  202 (252)
T ss_dssp             HHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHC-SSCEEE
T ss_pred             HHHHHHhcCCCEEEEEeecccCccCCcCHHHHHHHHHhc-CCCEEE
Confidence            34678888999999999999985   7999999988765 467765

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.89  E-value=1.3  Score=34.01  Aligned_cols=82  Identities=18%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             cccceeEEEecCHHHHHHHHHcCCCEEEecC--CCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHH
Q psy7930           7 WNKTTLEVCVDSVASALAAVRGGADRLELCA--ALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIM   84 (146)
Q Consensus         7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~--~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M   84 (146)
                      |...+.=.-+.+.+++..|.+.|++.+.+-.  .....+..++...+.++....++||.+      .|+....       
T Consensus       221 ~~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~~~~~~via------sGGIR~G-------  287 (353)
T d1p4ca_         221 WPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLI------DSGFRRG-------  287 (353)
T ss_dssp             CCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEE------CSSCCSH-------
T ss_pred             cccchhhhcchhhhhHHHHHhcCCchhhhcccccccccccccchhcccchhcccccceee------cCCcCch-------
Confidence            4444555667899999999999999998875  456677788888888888878888754      2335443       


Q ss_pred             HHHHHHHHHcCCCEEEEe
Q psy7930          85 ALDCHQFVESGADGFVIG  102 (146)
Q Consensus        85 ~~dI~~~~~~GadG~VfG  102 (146)
                       -||..+..+|||.+=+|
T Consensus       288 -~Dv~KALaLGAd~vgig  304 (353)
T d1p4ca_         288 -SDIVKALALGAEAVLLG  304 (353)
T ss_dssp             -HHHHHHHHTTCSCEEES
T ss_pred             -HHHHHHHHcCCCEEEEc
Confidence             68889999999988887

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=83.35  E-value=6.8  Score=28.81  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=70.6

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCC-CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGL-TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESG   95 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl-TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~G   95 (146)
                      +-.+-+....+.|+.+|=+.+=-..|=. =|...+++.+++..++|+.+     .|| .. |       .+|+..+++.|
T Consensus       152 ~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~~i~~~~~~pvi~-----~GG-v~-s-------~~di~~l~~~g  217 (253)
T d1thfd_         152 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA-----SGG-AG-K-------MEHFLEAFLAG  217 (253)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEE-----ESC-CC-S-------HHHHHHHHHTT
T ss_pred             hHHHHHHHHHhccCCEEEEEEecccCccCCccccccccccccccceEEE-----ecC-CC-C-------HHHHHHHHHCC
Confidence            3346677889999999988765555633 38999999999888999843     355 22 1       35677788899


Q ss_pred             CCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          96 ADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        96 adG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      ++|+++|-.=-.|+++.+.+++.+...+
T Consensus       218 ~~gvivgsal~~~~~~~~~~k~~l~~~~  245 (253)
T d1thfd_         218 ADAALAASVFHFREIDVRELKEYLKKHG  245 (253)
T ss_dssp             CSEEEESHHHHTTCSCHHHHHHHHHHTT
T ss_pred             CCEEEEchHHHcCCCCHHHHHHHHHHCC
Confidence            9999999877789999998888876554

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.03  E-value=4.1  Score=31.58  Aligned_cols=80  Identities=23%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCCEEEecCC--------------C---CCCCCCCC------HHHHHHHHhhCCCcEEEEEccCCCCCcc
Q psy7930          19 VASALAAVRGGADRLELCAA--------------L---SEGGLTPT------LGLYRVIKRLVLVPVFVMIRVRAGFDFV   75 (146)
Q Consensus        19 ~~~a~~A~~~GAdRIELc~~--------------l---~~GGlTPS------~g~i~~~~~~~~ipv~vMIRP~R~gdF~   75 (146)
                      .+.|..|+++|.|=|||-++              .   .-||- +-      ..+++.+++.++-|+.|=|++   .++.
T Consensus       146 ~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs-~enR~Rf~~Eiv~air~~~~~~~~vr~~~---~~~~  221 (337)
T d1z41a1         146 KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGS-PENRYRFLREIIDEVKQVWDGPLFVRVSA---SDYT  221 (337)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHCCSCEEEEEEC---CCCS
T ss_pred             HHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccch-hhhhhhHHHHHHHHHhhhhcccceEEecc---cccc
Confidence            36788899999999999652              1   22442 21      457888888888888765555   3455


Q ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          76 FSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        76 Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      .....++.+..-++.+.++|+|-+-+-
T Consensus       222 ~~g~~~~~~~~~~~~l~~~g~d~~~~s  248 (337)
T d1z41a1         222 DKGLDIADHIGFAKWMKEQGVDLIDCS  248 (337)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCccchhhhHHHHHHHHHcCCcccccc
Confidence            555556777778888999999976653

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=82.64  E-value=1.8  Score=32.06  Aligned_cols=69  Identities=20%  Similarity=0.213  Sum_probs=46.7

Q ss_pred             cCHHHHHHHHHcCCCEEEecCCCCCCCC-----------------------CCCHHHHHHHHhhC-CCcEEEEEccCCCC
Q psy7930          17 DSVASALAAVRGGADRLELCAALSEGGL-----------------------TPTLGLYRVIKRLV-LVPVFVMIRVRAGF   72 (146)
Q Consensus        17 ~s~~~a~~A~~~GAdRIELc~~l~~GGl-----------------------TPS~g~i~~~~~~~-~ipv~vMIRP~R~g   72 (146)
                      .+.+++..+.+.|+|-|-+-..   ||.                       -|+...+..+++.. ++||.+      .|
T Consensus       171 ~~~e~a~~~~~aGvd~i~vsn~---gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~------dG  241 (310)
T d1vcfa1         171 LSREAALALRDLPLAAVDVAGA---GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVA------SG  241 (310)
T ss_dssp             CCHHHHHHHTTSCCSEEECCCB---TSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEE------ES
T ss_pred             ccHHHHHHHHHcCCCEEEeccc---cccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEe------CC
Confidence            5789999999999999976542   442                       12333444444433 688755      23


Q ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy7930          73 DFVFSQAEKEIMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        73 dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG  102 (146)
                      ++.+.        .|+..+..+|||.|-+|
T Consensus       242 GIr~g--------~Dv~KALalGAdaV~iG  263 (310)
T d1vcfa1         242 GVYTG--------TDGAKALALGADLLAVA  263 (310)
T ss_dssp             SCCSH--------HHHHHHHHHTCSEEEEC
T ss_pred             CCCch--------HHHHHHHHhCCCEeeEh
Confidence            34444        67888889999999888

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.64  E-value=1  Score=35.61  Aligned_cols=76  Identities=22%  Similarity=0.350  Sum_probs=54.0

Q ss_pred             EecCHHHHHHHHHcCCCEEEe-------cC-CCCCCCCCCCHHHHHHH---HhhCCCcEEEEEccCCCCCcccCHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLEL-------CA-ALSEGGLTPTLGLYRVI---KRLVLVPVFVMIRVRAGFDFVFSQAEKEI   83 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIEL-------c~-~l~~GGlTPS~g~i~~~---~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~   83 (146)
                      .|-+++.+....+.|||=|=.       |. ....|.-.|-...+..+   .+..++||..      .|++.++      
T Consensus       146 nV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~~~~~~~~~~vpvIA------dGGi~~~------  213 (330)
T d1vrda1         146 NVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIA------DGGIRYS------  213 (330)
T ss_dssp             EECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEE------ESCCCSH------
T ss_pred             chhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHHHHHHHHhcCceEEe------cCCcccC------
Confidence            466788888888999999865       21 12224456766666554   3455788742      4557777      


Q ss_pred             HHHHHHHHHHcCCCEEEEeee
Q psy7930          84 MALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        84 M~~dI~~~~~~GadG~VfG~L  104 (146)
                        .||..+..+|||+|-+|-+
T Consensus       214 --gdiakAla~GAd~Vm~Gs~  232 (330)
T d1vrda1         214 --GDIVKALAAGAESVMVGSI  232 (330)
T ss_dssp             --HHHHHHHHTTCSEEEESHH
T ss_pred             --CchheeeeccCceeeecch
Confidence              7899999999999999954

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=82.30  E-value=1.7  Score=33.92  Aligned_cols=88  Identities=16%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             EecCHHHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHh----hCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHH
Q psy7930          15 CVDSVASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKR----LVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQ   90 (146)
Q Consensus        15 cv~s~~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~----~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~   90 (146)
                      ...|..-+......|.|-|-+...  .|  ..+...+.....    ...-+..+++|+ ...+-           ..|+.
T Consensus        48 ~~~s~~~~e~~a~~g~D~v~iD~E--Hg--~~~~~~~~~~i~a~~~~~~~~~~~iVRv-p~~~~-----------~~I~~  111 (299)
T d1izca_          48 GIPSTFVTKVLAATKPDFVWIDVE--HG--MFNRLELHDAIHAAQHHSEGRSLVIVRV-PKHDE-----------VSLST  111 (299)
T ss_dssp             CSCCHHHHHHHHHTCCSEEEEETT--TS--CCCHHHHHHHHHHHHHHTTTCSEEEEEC-CTTCH-----------HHHHH
T ss_pred             cCCCHHHHHHHHcCCCCEEEEcCC--CC--CCCHHHHHHHHHHHHHhCCCCCCeEEeC-CCCCh-----------HHHHH
Confidence            467889999999999999999853  34  334444443332    223456678998 55543           23677


Q ss_pred             HHHcCCCEEEEeeecCCCCcCHHHHHHHHHHhC
Q psy7930          91 FVESGADGFVIGALTGEQEIDIEFIRQLKTIIG  123 (146)
Q Consensus        91 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~  123 (146)
                      +.++||+||+|=-++     ..+..++++++++
T Consensus       112 ~LD~Ga~GIivP~V~-----s~eea~~~v~~~r  139 (299)
T d1izca_         112 ALDAGAAGIVIPHVE-----TVEEVREFVKEMY  139 (299)
T ss_dssp             HHHHTCSEEEETTCC-----CHHHHHHHHHHHS
T ss_pred             HHHhCcCeeeccccc-----cHHHHHHHHHhhh
Confidence            889999999985443     3567889999986

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.00  E-value=3.8  Score=31.72  Aligned_cols=82  Identities=11%  Similarity=0.093  Sum_probs=58.9

Q ss_pred             cccceeEEEecCHHHHHHHHHcCCCEEEecCC--CCCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCCcccCHHHHH
Q psy7930           7 WNKTTLEVCVDSVASALAAVRGGADRLELCAA--LSEGGLTPTLGLYRVIKRLV--LVPVFVMIRVRAGFDFVFSQAEKE   82 (146)
Q Consensus         7 ~~~~~lEvcv~s~~~a~~A~~~GAdRIELc~~--l~~GGlTPS~g~i~~~~~~~--~ipv~vMIRP~R~gdF~Ys~~E~~   82 (146)
                      |...++=-.+.+.+++..|.+.|+|.|-+-.+  -...+.-++...+.++++.+  ++||.+      .|++...     
T Consensus       216 ~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iia------dGGIR~G-----  284 (349)
T d1tb3a1         216 TRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYM------DGGVRTG-----  284 (349)
T ss_dssp             CCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEE------ESSCCSH-----
T ss_pred             cCCCcccchhhhhHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEe------ccCcCcH-----
Confidence            44454445668999999999999999988653  23455566677777777765  466544      2224443     


Q ss_pred             HHHHHHHHHHHcCCCEEEEe
Q psy7930          83 IMALDCHQFVESGADGFVIG  102 (146)
Q Consensus        83 ~M~~dI~~~~~~GadG~VfG  102 (146)
                         .||..+..+|||.+-+|
T Consensus       285 ---~Dv~KALALGA~~V~ig  301 (349)
T d1tb3a1         285 ---TDVLKALALGARCIFLG  301 (349)
T ss_dssp             ---HHHHHHHHTTCSCEEES
T ss_pred             ---HHHHHHHHcCCCEEEEC
Confidence               68999999999999887

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.89  E-value=3.5  Score=29.01  Aligned_cols=73  Identities=14%  Similarity=0.091  Sum_probs=53.0

Q ss_pred             HHHHHHHHcCCCEEEecCCCCCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHHHHHHHcCCCEE
Q psy7930          20 ASALAAVRGGADRLELCAALSEGGLTPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDCHQFVESGADGF   99 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI~~~~~~GadG~   99 (146)
                      +-|.++.++||.=|.+++          ...++.+++..+.|+......-..+...|.    ..+..+...+...|+|.+
T Consensus        37 ~~A~a~~~~Ga~~i~~~~----------~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~gad~i  102 (230)
T d1yxya1          37 LMAKAAQEAGAVGIRANS----------VRDIKEIQAITDLPIIGIIKKDYPPQEPFI----TATMTEVDQLAALNIAVI  102 (230)
T ss_dssp             HHHHHHHHHTCSEEEEES----------HHHHHHHHTTCCSCEEEECBCCCTTSCCCB----SCSHHHHHHHHTTTCSEE
T ss_pred             HHHHHHHHCCCeEEEecC----------hhhHHHHHhhhhcchhhhhcccCCcceeee----chhHHHHHHHHhcCCCEE
Confidence            347889999999998863          477888999999999877754233333332    224566778899999999


Q ss_pred             EEeeecC
Q psy7930         100 VIGALTG  106 (146)
Q Consensus       100 VfG~L~~  106 (146)
                      ++.....
T Consensus       103 ~~~~~~~  109 (230)
T d1yxya1         103 AMDCTKR  109 (230)
T ss_dssp             EEECCSS
T ss_pred             EEecccc
Confidence            9887543

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.45  E-value=1.6  Score=33.61  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=52.2

Q ss_pred             HHHHHHHHcCCCEEEec---CC-CC-------------CCCCCC--CHHHHHHHHhhC-CCcEEEEEccCCCCCcccCHH
Q psy7930          20 ASALAAVRGGADRLELC---AA-LS-------------EGGLTP--TLGLYRVIKRLV-LVPVFVMIRVRAGFDFVFSQA   79 (146)
Q Consensus        20 ~~a~~A~~~GAdRIELc---~~-l~-------------~GGlTP--S~g~i~~~~~~~-~ipv~vMIRP~R~gdF~Ys~~   79 (146)
                      +=+...+++|||=|||=   ++ ++             ..|+|+  .+.+++.+++.. ++|+..|--=  .--|.|.-+
T Consensus        35 ~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~--N~i~~~G~~  112 (267)
T d1qopa_          35 KIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYA--NLVFNNGID  112 (267)
T ss_dssp             HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECH--HHHHTTCHH
T ss_pred             HHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeec--cchhhcCch
Confidence            33445679999999997   22 21             235555  466777777764 7999999832  114666655


Q ss_pred             HHHHHHHHHHHHHHcCCCEEEEeee
Q psy7930          80 EKEIMALDCHQFVESGADGFVIGAL  104 (146)
Q Consensus        80 E~~~M~~dI~~~~~~GadG~VfG~L  104 (146)
                      .|      ++.+++.|+||+++==|
T Consensus       113 ~f------~~~~~~~Gv~GliipDl  131 (267)
T d1qopa_         113 AF------YARCEQVGVDSVLVADV  131 (267)
T ss_dssp             HH------HHHHHHHTCCEEEETTC
T ss_pred             HH------HHHHHhcCCCceeccch
Confidence            44      45789999999988655

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.13  E-value=4.3  Score=31.36  Aligned_cols=71  Identities=21%  Similarity=0.307  Sum_probs=50.3

Q ss_pred             ecCHHHHHHHHHcCCCEE-Ee--c-CCC-CCCCC--CCCHHHHHHHHhhCCCcEEEEEccCCCCCcccCHHHHHHHHHHH
Q psy7930          16 VDSVASALAAVRGGADRL-EL--C-AAL-SEGGL--TPTLGLYRVIKRLVLVPVFVMIRVRAGFDFVFSQAEKEIMALDC   88 (146)
Q Consensus        16 v~s~~~a~~A~~~GAdRI-EL--c-~~l-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRP~R~gdF~Ys~~E~~~M~~dI   88 (146)
                      +.|+|+|+.|+++||--+ -|  . +++ ..||.  +++...++.+.+.++|||..-.|.   |.|           -..
T Consensus         8 v~~~eqA~iAe~aGAvaVmaLervpadiR~~GGvaRm~dp~~i~ei~~~vsipvmak~ri---gh~-----------~ea   73 (254)
T d1znna1           8 VVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRI---GHY-----------VEA   73 (254)
T ss_dssp             ESSHHHHHHHHHHTCSEEEECC---------CCCCCCCCHHHHHHHHHHCSSCEEEEEET---TCH-----------HHH
T ss_pred             ccCHHHHHHhhccCceeEeeeccCCHHHHhcCCcccCCCHHHHHHHHHhcccccccccCC---Cch-----------HHH
Confidence            578999999999999554 22  1 222 35765  679999999999999999777766   555           345


Q ss_pred             HHHHHcCCCEEE
Q psy7930          89 HQFVESGADGFV  100 (146)
Q Consensus        89 ~~~~~~GadG~V  100 (146)
                      +.+-++|.|-+-
T Consensus        74 qiLe~~~vd~id   85 (254)
T d1znna1          74 RVLEALGVDYID   85 (254)
T ss_dssp             HHHHHHTCSEEE
T ss_pred             HhHHhhCCCccc
Confidence            677788887543