Psyllid ID: psy7947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MFVQKKKKKKKKKKKKKKKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFWTSHN
Secondary Structure (PSIPRED)
ccHHHHHHHHHcccccccccccccccccccEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccccEEEccccccccccEEccccccccccccccccEEEEEEEcEEccccccEEEEEEEEcccccEEEccEEEcccccccEEEEEEEccccEEEEEEccHHcccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccccEccEcEEEEccccHHHHHHHHHHHHccccccccccEEEEEEEcccccHHHccccHccccHHHHHHcccccEEccccccccEEEEEEccccccccccEEEEEEEEcccccEcccEEEcccccccccEEEEEEEcHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MFVQKKKKKKKKkkkkkkknvrplspyhSVVKLCEKDNLENTLKRLISSLKDissqksagmyvslkfhcgdnkTESVAVAMTNTFIarkmgfpeiilpgdvrnDLYVTLVNAefkssdktIQVTVQVCTEAGVILKVnaefkssdktIQVTVQVCTEAGVILKAHdqfwtshn
Flexible Loop (DISEMBL)
mfvqkkkkkkkkkkkkkkknvrplspyhsvvklCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAefkssdktiqVTVQVCTEAGVILKvnaefkssdktIQVTVQVCTEAGVILkahdqfwtshn
Low Complexity Region (SEG)
MFVQkkkkkkkkkkkkkkkNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFWTSHN
Disordered region (IsUnstruct)
****************************SVVKLCEKDNLENTLKRLISSLK******SAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFW****
Disordered Region (DISOPRED)
**********************PLSPYHSVVKLCEKDNLENTLK***************GMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFW****
Disordered Region (DISEMBL)
***********************LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFWTSHN
Disordered Region (DISPRO)
********************VRPLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFWT***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVQKKKKKKKKKKKKKKKNVRPLSPYHSVVKLCExxxxxxxxxxxxxxxxxxxxxKSAGMYVSLKFHCGDNKTESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTEAGVILKAHDQFWTSHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q8C3J5	1828	Dedicator of cytokinesis	yes	N/A	0.606	0.057	0.384	8e-16
Q92608	1830	Dedicator of cytokinesis	yes	N/A	0.589	0.055	0.394	3e-15
B2RY04	1868	Dedicator of cytokinesis	no	N/A	0.635	0.058	0.429	8e-14
Q14185	1865	Dedicator of cytokinesis	no	N/A	0.595	0.055	0.403	9e-14
Q9H7D0	1870	Dedicator of cytokinesis	no	N/A	0.635	0.058	0.429	1e-13
Q8BUR4	1865	Dedicator of cytokinesis	no	N/A	0.595	0.055	0.403	1e-12
Q8CIQ7	2027	Dedicator of cytokinesis	no	N/A	0.549	0.046	0.394	6e-11
Q8IZD9	2030	Dedicator of cytokinesis	no	N/A	0.549	0.046	0.394	1e-10
Q8N1I0	1966	Dedicator of cytokinesis	no	N/A	0.601	0.052	0.353	3e-08
P59764	1978	Dedicator of cytokinesis	no	N/A	0.497	0.043	0.373	7e-08

>sp|Q8C3J5|DOCK2_MOUSE Dedicator of cytokinesis protein 2 OS=Mus musculus GN=Dock2 PE=1 SV=3

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 12/117 (10%)

Query: 26  PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
           P+H V    E D L + L ++I+S  D   Q   G++V++K   GD    + +   +   
Sbjct: 349 PFHPVS--AENDFLHSLLGKVIASKGDSGGQ---GLWVTMKMLVGDIIQIRKDYPHLVDR 403

Query: 83  NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
            T +ARK+GFPEII+PGDVRND+Y+TL+  +F    K++ + ++V + VCTE G +L
Sbjct: 404 TTVVARKLGFPEIIMPGDVRNDIYITLLQGDFDKYTKTTQRNVEVIMCVCTEDGKVL 460

Involved in cytoskeletal rearrangements required for lymphocyte migration in response of chemokines. Activates RAC1 and RAC2, but not CDC42, by functioning as a guanine nucleotide exchange factor (GEF), which exchanges bound GDP for free GTP. May also participate in IL2 transcriptional activation via the activation of RAC2.
Mus musculus (taxid: 10090)

>sp|Q92608|DOCK2_HUMAN Dedicator of cytokinesis protein 2 OS=Homo sapiens GN=DOCK2 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 12/114 (10%)

Query: 26  PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
           P+H V    E D L + L ++I+S  D   Q   G++V++K   GD    + +   +   
Sbjct: 349 PFHPVT--AENDFLHSLLGKVIASKGDSGGQ---GLWVTMKMLVGDIIQIRKDYPHLVDR 403

Query: 83  NTFIARKMGFPEIILPGDVRNDLYVTLVNAEFKSSDKTIQVTVQ----VCTEAG 132
            T +ARK+GFPEII+PGDVRND+Y+TL+  +F   +KT Q  V+    VC E G
Sbjct: 404 TTVVARKLGFPEIIMPGDVRNDIYITLLQGDFDKYNKTTQRNVEVIMCVCAEDG 457

Involved in cytoskeletal rearrangements required for lymphocyte migration in response of chemokines. Activates RAC1 and RAC2, but not CDC42, by functioning as a guanine nucleotide exchange factor (GEF), which exchanges bound GDP for free GTP. May also participate in IL2 transcriptional activation via the activation of RAC2.

Homo sapiens (taxid: 9606)

>sp|B2RY04|DOCK5_MOUSE Dedicator of cytokinesis protein 5 OS=Mus musculus GN=Dock5 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 11/121 (9%)

Query: 24  LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
           +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct: 364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421

Query: 80  AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
             + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct: 422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVFDEEGNLL 480

Query: 136 K 136
           +
Sbjct: 481 E 481

Guanine nucleotide exchange factor (GEF) for Rho and Rac. GEF proteins activate small GTPases by exchanging bound GDP for free GTP.

Mus musculus (taxid: 10090)

>sp|Q14185|DOCK1_HUMAN Dedicator of cytokinesis protein 1 OS=Homo sapiens GN=DOCK1 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 11/114 (9%)

Query: 26  PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
           P+  V    E D L+  + ++I++ K+++  K  G++V+LK   GD    + E   +   
Sbjct: 350 PFQPVA--GENDFLQTVINKVIAA-KEVN-HKGQGLWVTLKLLPGDIHQIRKEFPHLVDR 405

Query: 83  NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
            T +ARK GFPEII+PGDVRND+YVTLV  +F    K++ K ++VTV V  E G
Sbjct: 406 TTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDG 459

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Functions as a guanine nucleotide exchange factor (GEF), which activates Rac Rho small GTPases by exchanging bound GDP for free GTP. Its GEF activity may be enhanced by ELMO1.

Homo sapiens (taxid: 9606)

>sp|Q9H7D0|DOCK5_HUMAN Dedicator of cytokinesis protein 5 OS=Homo sapiens GN=DOCK5 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 11/121 (9%)

Query: 24  LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
           +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct: 364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421

Query: 80  AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
             + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct: 422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVHDEEGKLL 480

Query: 136 K 136
           +
Sbjct: 481 E 481

Guanine nucleotide exchange factor (GEF) for Rho and Rac. GEF proteins activate small GTPases by exchanging bound GDP for free GTP.

Homo sapiens (taxid: 9606)

>sp|Q8BUR4|DOCK1_MOUSE Dedicator of cytokinesis protein 1 OS=Mus musculus GN=Dock1 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 11/114 (9%)

Query: 26  PYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMT 82
           P+ +V    E D L+  + ++I++ K+++  K  G++V+LK   GD    + E   +   
Sbjct: 350 PFQAVAG--ENDFLQTVINKVIAA-KEVN-HKGQGLWVTLKLLPGDIHQIRKEFPHLVDR 405

Query: 83  NTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
            T +ARK GFPEII+PGDVRND+YVTLV  +F    K++ K ++VTV V  E G
Sbjct: 406 TTAVARKTGFPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDG 459

Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Functions as a guanine nucleotide exchange factor (GEF), which activates Rac Rho small GTPases by exchanging bound GDP for free GTP. Its GEF activity may be enhanced by ELMO1.

Mus musculus (taxid: 10090)

>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus musculus GN=Dock3 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 9/104 (8%)

Query: 40  ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
           EN +++  SS K  +   S G+ +SL+   GD    + E+  +      I RK+GFP++I
Sbjct: 358 ENIIRK--SSTKYSAPSASHGLIISLQLFRGDMEQIRRENPMIFNRGLAITRKLGFPDVI 415

Query: 97  LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
           +PGD+RNDLY+TL   +F    KS  K I+VT+ V    G ILK
Sbjct: 416 MPGDIRNDLYLTLEKGDFERGGKSVQKNIEVTMYVLYADGEILK 459

Potential guanine nucleotide exchange factor (GEF). GEF proteins activate some small GTPases by exchanging bound GDP for free GTP. Its interaction with presenilin proteins as well as its ability to stimulate Tau/MAPT phosphorylation suggest that it may be involved in Alzheimer disease. Ectopic expression in nerve cells decreases the secretion of beta-amyloid APBA1 protein and lowers the rate of cell-substratum adhesion, suggesting that it may affect the function of some small GTPase involved in the regulation of actin cytoskeleton or cell adhesion receptors.

Mus musculus (taxid: 10090)

>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 9/104 (8%)

Query: 40  ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
           EN +++  SS K  +   S G+ +SL+   GD    + E+  +      I RK+GFP++I
Sbjct: 358 ENIIRK--SSAKYSAPSASHGLIISLQLLRGDMEQIRRENPMIFNRGLAITRKLGFPDVI 415

Query: 97  LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
           +PGD+RNDLY+TL   +F    KS  K I+VT+ V    G ILK
Sbjct: 416 MPGDIRNDLYLTLEKGDFERGGKSVQKNIEVTMYVLYADGEILK 459

Potential guanine nucleotide exchange factor (GEF). GEF proteins activate some small GTPases by exchanging bound GDP for free GTP. Its interaction with presenilin proteins as well as its ability to stimulate Tau/MAPT phosphorylation suggest that it may be involved in Alzheimer disease. Ectopic expression in nerve cells decreases the secretion of beta-amyloid APBA1 protein and lowers the rate of cell-substratum adhesion, suggesting that it may affect the function of some small GTPase involved in the regulation of actin cytoskeleton or cell adhesion receptors.

Homo sapiens (taxid: 9606)

>sp|Q8N1I0|DOCK4_HUMAN Dedicator of cytokinesis protein 4 OS=Homo sapiens GN=DOCK4 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 9/113 (7%)

Query: 40  ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
           EN +K+L +      S  +AG+ VSL+   GD    + E  +V      I RK+GF  II
Sbjct: 338 ENIIKKLNARYNLTGS--NAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSNII 395

Query: 97  LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSD 145
           +PG++RNDLY+T+   EF    KS  + ++VT+ +   +G  LK    F S +
Sbjct: 396 MPGEMRNDLYITIERGEFEKGGKSVARNVEVTMFIVDSSGQTLKDFISFGSGE 448

Involved in regulation of adherens junction between cells. Plays a role in cell migration. Functions as a guanine nucleotide exchange factor (GEF), which activates Rap1 small GTPase by exchanging bound GDP for free GTP.

Homo sapiens (taxid: 9606)

>sp|P59764|DOCK4_MOUSE Dedicator of cytokinesis protein 4 OS=Mus musculus GN=Dock4 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 40  ENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMGFPEII 96
           EN +K+L +      S  +AG+ VSL+   GD    + E  +V      I RK+GF +II
Sbjct: 338 ENIIKKLNARYNLTGS--NAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSDII 395

Query: 97  LPGDVRNDLYVTLVNAEFKSSDKTIQVTVQV 127
           +PG++RNDLY+T+   EF+   K++   V+V
Sbjct: 396 MPGEMRNDLYITVERGEFEKGGKSVARNVEV 426

Involved in regulation of adherens junction between cells. Plays a role in cell migration. Functions as a guanine nucleotide exchange factor (GEF), which activates Rap1 small GTPase by exchanging bound GDP for free GTP.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
328724762	1665	PREDICTED: dedicator of cytokinesis prot	0.682	0.070	0.5	6e-24
328724760	1857	PREDICTED: dedicator of cytokinesis prot	0.682	0.063	0.5	6e-24
328724758	1896	PREDICTED: dedicator of cytokinesis prot	0.682	0.062	0.5	7e-24
380015404	376	PREDICTED: dedicator of cytokinesis prot	0.589	0.271	0.471	1e-20
242011333	1880	dedicator of cytokinesis protein, putati	0.583	0.053	0.522	1e-20
345495617	1991	PREDICTED: LOW QUALITY PROTEIN: dedicato	0.601	0.052	0.458	3e-20
170032949	1906	dedicator of cytokinesis protein 1 [Cule	0.566	0.051	0.5	6e-20
383866201	2007	PREDICTED: dedicator of cytokinesis prot	0.589	0.050	0.479	7e-20
383866199	1999	PREDICTED: dedicator of cytokinesis prot	0.589	0.051	0.479	7e-20
270013806	1945	hypothetical protein TcasGA2_TC012454 [T	0.578	0.051	0.485	1e-19

>gi|328724762|ref|XP_003248246.1| PREDICTED: dedicator of cytokinesis protein 1-like isoform 3 [Acyrthosiphon pisum]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 81/136 (59%), Gaps = 18/136 (13%)

Query: 10  KKKKKKKKKKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDIS--SQKSAGMYVSLKF 67
           +K +  + K +  P  P       CEKDNLENTLKR ++ L+D S    K  G+YVS K 
Sbjct: 337 QKLESDEDKHHFMPFLP-------CEKDNLENTLKRYLN-LRDYSHKEHKGQGLYVSFKL 388

Query: 68  HCGDNKT---ESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF-----KSSDK 119
             GD K    E   + + N  + RKMGFPE+ILPGDVRNDLY+TLVN EF      SSDK
Sbjct: 389 LHGDIKQVREECPHLVLGNVALVRKMGFPEVILPGDVRNDLYLTLVNGEFSRGSLSSSDK 448

Query: 120 TIQVTVQVCTEAGVIL 135
            IQVTV  C E GV L
Sbjct: 449 NIQVTVTACNEKGVKL 464

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724760|ref|XP_001948699.2| PREDICTED: dedicator of cytokinesis protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 81/136 (59%), Gaps = 18/136 (13%)

Query: 10  KKKKKKKKKKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDIS--SQKSAGMYVSLKF 67
           +K +  + K +  P  P       CEKDNLENTLKR ++ L+D S    K  G+YVS K 
Sbjct: 337 QKLESDEDKHHFMPFLP-------CEKDNLENTLKRYLN-LRDYSHKEHKGQGLYVSFKL 388

Query: 68  HCGDNKT---ESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF-----KSSDK 119
             GD K    E   + + N  + RKMGFPE+ILPGDVRNDLY+TLVN EF      SSDK
Sbjct: 389 LHGDIKQVREECPHLVLGNVALVRKMGFPEVILPGDVRNDLYLTLVNGEFSRGSLSSSDK 448

Query: 120 TIQVTVQVCTEAGVIL 135
            IQVTV  C E GV L
Sbjct: 449 NIQVTVTACNEKGVKL 464

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724758|ref|XP_003248245.1| PREDICTED: dedicator of cytokinesis protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 81/136 (59%), Gaps = 18/136 (13%)

Query: 10  KKKKKKKKKKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDIS--SQKSAGMYVSLKF 67
           +K +  + K +  P  P       CEKDNLENTLKR ++ L+D S    K  G+YVS K 
Sbjct: 337 QKLESDEDKHHFMPFLP-------CEKDNLENTLKRYLN-LRDYSHKEHKGQGLYVSFKL 388

Query: 68  HCGDNKT---ESVAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF-----KSSDK 119
             GD K    E   + + N  + RKMGFPE+ILPGDVRNDLY+TLVN EF      SSDK
Sbjct: 389 LHGDIKQVREECPHLVLGNVALVRKMGFPEVILPGDVRNDLYLTLVNGEFSRGSLSSSDK 448

Query: 120 TIQVTVQVCTEAGVIL 135
            IQVTV  C E GV L
Sbjct: 449 NIQVTVTACNEKGVKL 464

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015404|ref|XP_003691692.1| PREDICTED: dedicator of cytokinesis protein 1-like, partial [Apis florea]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 19/121 (15%)

Query: 31  VKLCEKDNLENTLKRLISSLKDISSQKSA-----------GMYVSLKFHCGDNK---TES 76
           V+ CEK++L+ TL+R++S  K+ + QK++           G++ SLK   GD K    E+
Sbjct: 129 VQCCEKESLDGTLRRILSQ-KETNIQKNSNGNSGSFAGGQGLWTSLKLLGGDPKQVRDEN 187

Query: 77  VAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
             + + N  IARKMGFPE+ILPGDVRNDLY+TL++ EF    KS+DK ++VTV+VC E G
Sbjct: 188 PHLVLGNVAIARKMGFPEVILPGDVRNDLYLTLISGEFNKGSKSTDKNVEVTVKVCNEFG 247

Query: 133 V 133
           V
Sbjct: 248 V 248

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011333|ref|XP_002426407.1| dedicator of cytokinesis protein, putative [Pediculus humanus corporis] gi|212510506|gb|EEB13669.1| dedicator of cytokinesis protein, putative [Pediculus humanus corporis]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 10/111 (9%)

Query: 34  CEKDNLENTLKRLISSLKDIS--SQKSAGMYVSLKFHCGDNKT---ESVAVAMTNTFIAR 88
           CEK++LE T KR + + KD++    K  G++VSLK   GD K    E+  + + N  IAR
Sbjct: 351 CEKESLEQTFKRALYN-KDVTQKDHKGQGLWVSLKVLHGDLKQVSEENPHLVLGNVAIAR 409

Query: 89  KMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
           KMGFPE+ILPGDVRNDLY+TLV+ +F    K++DK IQVTV VC E G I+
Sbjct: 410 KMGFPEVILPGDVRNDLYLTLVSGDFSKGVKNTDKNIQVTVTVCNEKGQII 460

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495617|ref|XP_003427540.1| PREDICTED: LOW QUALITY PROTEIN: dedicator of cytokinesis protein 1-like [Nasonia vitripennis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 16/120 (13%)

Query: 31  VKLCEKDNLENTLKRLISSLKDISSQKSA--------GMYVSLKFHCGDNKT---ESVAV 79
           ++ CEK++L+ TL+R+++  K+++ QK++        G++ SLK   GD K    E+  +
Sbjct: 346 LQCCEKESLDGTLRRILTQ-KEVNLQKNSSVGNNVGQGLWCSLKLLRGDIKQVRDENPHL 404

Query: 80  AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
            + N  +ARKMGFPE+ILPGDVRNDLY+TLV+ EF    KS+DK ++VTV+VC E GV +
Sbjct: 405 VLGNVSVARKMGFPEVILPGDVRNDLYLTLVSGEFSKGSKSTDKNVEVTVKVCNEDGVAI 464

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032949|ref|XP_001844342.1| dedicator of cytokinesis protein 1 [Culex quinquefasciatus] gi|167873299|gb|EDS36682.1| dedicator of cytokinesis protein 1 [Culex quinquefasciatus]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 8/106 (7%)

Query: 34  CEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD---NKTESVAVAMTNTFIARKM 90
           CEK++LE+TLK+LI++ KD+  +  +G+++S+    GD    K E   + + N   ARKM
Sbjct: 247 CEKESLESTLKKLITN-KDLGEKSESGIWISVDILHGDIKQVKEEYPHLVLGNVAFARKM 305

Query: 91  GFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
           GFPE+I PGDVRNDLY+TLV+ EF    KSSDK I+VT  VC  +G
Sbjct: 306 GFPEVIFPGDVRNDLYLTLVSGEFSKGSKSSDKNIEVTAVVCNRSG 351

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866201|ref|XP_003708559.1| PREDICTED: dedicator of cytokinesis protein 1-like isoform 2 [Megachile rotundata]

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 19/121 (15%)

Query: 31  VKLCEKDNLENTLKRLISSLKDISSQKS-----------AGMYVSLKFHCGDNKT---ES 76
           V+ CEK++L+ TL+R++S  K+ + QKS            G++ SLK   GD K    E+
Sbjct: 343 VQCCEKESLDGTLRRILSQ-KETNIQKSNNGNSGSFAGGQGLWASLKLLRGDPKQVRDEN 401

Query: 77  VAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
             + + N  IARKMGFPE+ILPGDVRNDLY+TL++ EF    KS+DK ++VTV+VC E+G
Sbjct: 402 PHLVLGNVAIARKMGFPEVILPGDVRNDLYLTLISGEFNKGSKSTDKNVEVTVKVCNESG 461

Query: 133 V 133
           V
Sbjct: 462 V 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866199|ref|XP_003708558.1| PREDICTED: dedicator of cytokinesis protein 1-like isoform 1 [Megachile rotundata]

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 81/121 (66%), Gaps = 19/121 (15%)

Query: 31  VKLCEKDNLENTLKRLISSLKDISSQKS-----------AGMYVSLKFHCGDNKT---ES 76
           V+ CEK++L+ TL+R++S  K+ + QKS            G++ SLK   GD K    E+
Sbjct: 343 VQCCEKESLDGTLRRILSQ-KETNIQKSNNGNSGSFAGGQGLWASLKLLRGDPKQVRDEN 401

Query: 77  VAVAMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
             + + N  IARKMGFPE+ILPGDVRNDLY+TL++ EF    KS+DK ++VTV+VC E+G
Sbjct: 402 PHLVLGNVAIARKMGFPEVILPGDVRNDLYLTLISGEFNKGSKSTDKNVEVTVKVCNESG 461

Query: 133 V 133
           V
Sbjct: 462 V 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013806|gb|EFA10254.1| hypothetical protein TcasGA2_TC012454 [Tribolium castaneum]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 7/107 (6%)

Query: 34  CEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNK---TESVAVAMTNTFIARKM 90
           C+KDNLE TLK++I+     +  K+  ++V +K   GD K    E+  + + N  IARKM
Sbjct: 358 CDKDNLEQTLKKIINKDFAKTEHKNHALFVGMKLLRGDLKQVREENPHLVLGNLSIARKM 417

Query: 91  GFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGV 133
           GFPE+ILPGDVRNDLY+TL+  EF    K+ DK ++V V+VC E GV
Sbjct: 418 GFPEVILPGDVRNDLYLTLIKGEFSKGSKTCDKNVEVVVRVCNEEGV 464

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
FB|FBgn0015513	1970	mbc "myoblast city" [Drosophil	0.583	0.051	0.454	7.8e-16
RGD|1306872	657	Dock5 "dedicator of cytokinesi	0.635	0.167	0.429	9e-15
UNIPROTKB|H0Y7N4	1090	DOCK5 "Dedicator of cytokinesi	0.635	0.100	0.429	1.9e-14
UNIPROTKB|F1RJU3	1833	DOCK5 "Uncharacterized protein	0.635	0.060	0.429	3.6e-14
UNIPROTKB|F1LVA9	1854	F1LVA9 "Uncharacterized protei	0.635	0.059	0.429	3.7e-14
MGI|MGI:2652871	1868	Dock5 "dedicator of cytokinesi	0.635	0.058	0.429	3.7e-14
UNIPROTKB|F1PSR2	1869	DOCK5 "Uncharacterized protein	0.635	0.058	0.421	3.7e-14
UNIPROTKB|Q9H7D0	1870	DOCK5 "Dedicator of cytokinesi	0.635	0.058	0.429	3.7e-14
UNIPROTKB|F1MJ73	1831	DOCK5 "Uncharacterized protein	0.635	0.060	0.429	4.6e-14
UNIPROTKB|F1NVR7	1849	DOCK1 "Uncharacterized protein	0.560	0.052	0.428	4.7e-14

FB|FBgn0015513 mbc "myoblast city" [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 7.8e-16, P = 7.8e-16
 Identities = 50/110 (45%), Positives = 73/110 (66%)

Query:    33 LCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKT---ESVAVAMTNTFIARK 89
             +CEK+ L+ TL++LI++ KDI    S  M V+++   GD K    E   +  TN  +ARK
Sbjct:   374 MCEKETLDGTLRKLIAN-KDIGKIDSK-MAVTIEVLRGDIKQIKEEFPRLMHTNVPVARK 431

Query:    90 MGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
             MGFPE+ILPGDVRNDLY+T+ + EF    K+S+K ++V+V V  E G ++
Sbjct:   432 MGFPEVILPGDVRNDLYLTICSGEFARIAKTSEKNVEVSVCVANEQGYLM 481

GO:0007520 "myoblast fusion" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0001726 "ruffle" evidence=TAS

GO:0007519 "skeletal muscle tissue development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0007523 "larval visceral muscle development" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0035212 "cell competition in a multicellular organism" evidence=IMP

GO:0032863 "activation of Rac GTPase activity" evidence=IGI

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0007417 "central nervous system development" evidence=IMP

GO:0019897 "extrinsic to plasma membrane" evidence=IDA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IGI

RGD|1306872 Dock5 "dedicator of cytokinesis 5" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 9.0e-15, P = 9.0e-15
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   350 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 407

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   408 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVFDEEGNLL 466

Query:   136 K 136
             +
Sbjct:   467 E 467

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|H0Y7N4 DOCK5 "Dedicator of cytokinesis protein 5" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   136 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 193

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   194 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVHDEEGKLL 252

Query:   136 K 136
             +
Sbjct:   253 E 253

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1RJU3 DOCK5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 198 (74.8 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   329 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 386

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   387 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVYDEEGRLL 445

Query:   136 K 136
             +
Sbjct:   446 E 446

GO:0005737 "cytoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1LVA9 F1LVA9 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   350 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 407

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   408 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVFDEEGNLL 466

Query:   136 K 136
             +
Sbjct:   467 E 467

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

MGI|MGI:2652871 Dock5 "dedicator of cytokinesis 5" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVFDEEGNLL 480

Query:   136 K 136
             +
Sbjct:   481 E 481

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1PSR2 DOCK5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 51/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G+++SLK   GD     K  S  V
Sbjct:   364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWISLKLLPGDLTQVQKNFSHLV 421

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVYDEEGKLL 480

Query:   136 K 136
             +
Sbjct:   481 E 481

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q9H7D0 DOCK5 "Dedicator of cytokinesis protein 5" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   364 MSPLITSHVIGENEPLTSVLNKVIAA-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 421

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   422 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVHDEEGKLL 480

Query:   136 K 136
             +
Sbjct:   481 E 481

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

UNIPROTKB|F1MJ73 DOCK5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 4.6e-14, P = 4.6e-14
 Identities = 52/121 (42%), Positives = 76/121 (62%)

Query:    24 LSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGD----NKTESVAV 79
             +SP  +   + E + L + L ++I++ K+++  K  G++VSLK   GD     K  S  V
Sbjct:   323 MSPLITSHVIGENEPLTSVLNKVIAT-KEVN-HKGQGLWVSLKLLPGDLTQVQKNFSHLV 380

Query:    80 AMTNTFIARKMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVIL 135
               + T IARKMGFPEIILPGDVRND+YVTL++ EF    K + K ++VT+ V  E G +L
Sbjct:   381 DRS-TAIARKMGFPEIILPGDVRNDIYVTLIHGEFDKGKKKTPKNVEVTMSVHDEEGRLL 439

Query:   136 K 136
             +
Sbjct:   440 E 440

GO:0005737 "cytoplasm" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1NVR7 DOCK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 4.7e-14, P = 4.7e-14
 Identities = 45/105 (42%), Positives = 69/105 (65%)

Query:    35 EKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDN---KTESVAVAMTNTFIARKMG 91
             E D L+  + ++I++ K+++ +  AG++V+LK   GD    + E   +   +T +ARKMG
Sbjct:   342 ENDFLQTVINKVIAA-KEVNHKGQAGLWVTLKLLPGDIHQIRKEFPHLVDRSTAVARKMG 400

Query:    92 FPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAG 132
             FPEII+PGDVRND+YVTLV  +F    K++ K ++VTV V  E G
Sbjct:   401 FPEIIMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDG 445

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd08694	196	cd08694, C2_Dock-A, C2 domains found in Dedicator	9e-10
cd08695	189	cd08695, C2_Dock-B, C2 domains found in Dedicator	8e-05
pfam14180	178	pfam14180, DOCK_C2, GTP-GDP exchange factor	1e-04
pfam14429	179	pfam14429, DOCK-C2, C2 domain in Dock180 and Zizim	3e-04
cd08679	178	cd08679, C2_DOCK180_related, C2 domains found in D	0.004

>gnl|CDD|176076 cd08694, C2_Dock-A, C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 4/40 (10%)

Query: 101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
           VRNDLY+TLV  +F    K+SDK ++VTV VC E G I+ 
Sbjct: 1   VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDGKIIP 40

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 196

>gnl|CDD|176077 cd08695, C2_Dock-B, C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 4/40 (10%)

Query: 101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
           VRNDLY+TL   EF    KS+ K I+VT+ V    G +LK
Sbjct: 1   VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQVLK 40

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 189

>gnl|CDD|222580 pfam14180, DOCK_C2, GTP-GDP exchange factor

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 100 DVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEF 141
           D RNDLYV   + +F    KS  + I VTV++    G +L+     
Sbjct: 1   DYRNDLYVYPKSLKFSKQPKSKARNIVVTVELRDSDGEVLEEGLPI 46

Dock proteins are atypical GTP-GDP exchange factors for the small GTPases Pac and Cdc42, and are implicated in biological roles related to cell-migration and phagocytosis. Length = 178

>gnl|CDD|222746 pfam14429, DOCK-C2, C2 domain in Dock180 and Zizimin proteins

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 98  PGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVI 134
           P D RNDLYV L +A F    KS  + I+VTV++    G  
Sbjct: 2   PTDYRNDLYVYLKSANFSKPKKSKARNIEVTVELRDSDGSS 42

The Dock180/Dock1 and Zizimin proteins are atypical GTP/GDP exchange factors for the small GTPases Rac and Cdc42 and are implicated cell-migration and phagocytosis. Across all Dock180 proteins, two regions are conserved: C-terminus termed CZH2 or DHR2 (or the Dedicator of cytokinesis) whereas CZH1/DHR1 contain a new family of the C2 domain. Length = 179

>gnl|CDD|176061 cd08679, C2_DOCK180_related, C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 102 RNDLYVTLVNAEF---KSSDKTIQVTVQV 127
           RNDLYV   + E    KS  + I++TV+V
Sbjct: 2   RNDLYVYPQSGELSKAKSKGRNIEITVEV 30

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homology domains: the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker). DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1998|consensus	1548		99.93
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	99.76
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	99.76
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	99.3
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	99.28
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	98.78
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	98.58

>KOG1998|consensus

Probab=99.93  E-value=2.9e-26  Score=230.55  Aligned_cols=132  Identities=33%  Similarity=0.456  Sum_probs=114.9

Q ss_pred             hccccceeeeEeeeccccccchHHHHHHHhhccccccccccccEEEEEEeecCCccc---cceeeccccchhhhcCCCCc
Q psy7947          18 KKNVRPLSPYHSVVKLCEKDNLENTLKRLISSLKDISSQKSAGMYVSLKFHCGDNKT---ESVAVAMTNTFIARKMGFPE   94 (173)
Q Consensus        18 ~~eveh~i~i~~~~~~~E~e~~d~iIrk~i~s~k~~~~~~~~gl~VsLkll~Gdl~q---enP~L~~~~v~itrKlGFpe   94 (173)
                      +++-+|+++++.+  ..+++++-.++-+.++ ++..+  .++||||++++|+|+..|   ++|+||++ .++||||||||
T Consensus       179 ~e~~~~~~~~~~~--e~~~~~l~~~~~~~~~-k~~~~--~~~~l~vs~kll~G~~~q~r~~~p~l~~r-s~itrk~gFp~  252 (1548)
T KOG1998|consen  179 DEIEQHFILFQEV--ESENDFLPFLISKVIA-KKGLN--AGQGLWVSLKLLPGDIVQIRAERPHLFDR-SAVARKQGFPE  252 (1548)
T ss_pred             hhhhhhheecccc--cCcccccchhhhcccc-CcccC--CccceEEEEEEecCchHHHhhhcCchhhh-hHHHhhcCCch
Confidence            6777899998876  4555666555555444 22222  389999999999999999   99999999 99999999999


Q ss_pred             cccCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEee
Q psy7947          95 IILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCT  156 (173)
Q Consensus        95 vI~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~  156 (173)
                      ||| ||+||||||||++|||    |++++||+|||+|++.+|..+.+||+.|||++.++..++++.
T Consensus       253 vim-gDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~G~~l~d~~~~~sG~~~i~~y~s~v~  317 (1548)
T KOG1998|consen  253 IIM-GDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVDGKQLFDKTESGSGEPYIPEYHSVVL  317 (1548)
T ss_pred             hhc-cccccceeeeeeehhhhccccccceeEEEEEEEeecccceehhheeccCCCcccceeeeeee
Confidence            999 9999999999999999    889999999999999999999999999999999999988763

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=99.76  E-value=1.1e-18  Score=145.75  Aligned_cols=60  Identities=40%  Similarity=0.598  Sum_probs=56.5

Q ss_pred             CCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEe--eeccc
Q psy7947         101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVC--TEAGV  160 (173)
Q Consensus       101 ~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~--~erg~  160 (173)
                      +||||||||++|+|    ++++|||||+|+||+++|++|++||+.|||+++++.|+|++  .+++-
T Consensus         1 vRNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~~G~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P   66 (196)
T cd08694           1 VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDGKIIPGVISLGAGEEPIDEYKSVIYYQVDKP   66 (196)
T ss_pred             CCccEEEEeeeeEEcCCCCCCcceEEEEEEEECCCCCCCceeEEcCCCCCcceeEEEEEEeecCCC
Confidence            69999999999999    67799999999999999999999999999999999999999  66653

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=99.76  E-value=1.2e-18  Score=144.52  Aligned_cols=57  Identities=37%  Similarity=0.441  Sum_probs=55.2

Q ss_pred             CCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEeee
Q psy7947         101 VRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTE  157 (173)
Q Consensus       101 ~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~e  157 (173)
                      +||||||||++|+|    |+++|||||+|+||+++|+++++||++|+|+++++.|+|+++.
T Consensus         1 vRNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G~~~~~cI~~~~g~~~~se~~S~V~y   61 (189)
T cd08695           1 VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQVLKDCISLGSGEPPCSEYRSFVLY   61 (189)
T ss_pred             CcccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCCCCccCCEEcCCCCCccceEEEEEEE
Confidence            69999999999999    5789999999999999999999999999999999999999987

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=99.30  E-value=5.4e-12  Score=101.60  Aligned_cols=58  Identities=28%  Similarity=0.318  Sum_probs=54.9

Q ss_pred             CCCceeEEeeeceee---ccCCceEEEEEEEccCCceeccceE-ecCCCCCceeEEEEeeec
Q psy7947         101 VRNDLYVTLVNAEFK---SSDKTIQVTVQVCTEAGVILKVNAE-FKSSDKTIQVTVQVCTEA  158 (173)
Q Consensus       101 ~RNDlYvTL~~GeFk---s~~kNiEVt~~V~~~~G~~Ie~cI~-~gSg~~~vt~w~t~~~er  158 (173)
                      .||||||++.+|+|.   +++|||+|+|+||++||.++++||+ +|+|....++|.|++..+
T Consensus         1 ~rN~LYi~p~~~~~~~~~~~~rNi~v~v~~r~~d~~~~~~~i~~~~~~~~~~s~~~sv~~~~   62 (178)
T cd08679           1 LRNDLYVYPQSGELSKAKSKGRNIEITVEVRDDDGDIIEPCISAPGSGSELRSEYTSVVYYH   62 (178)
T ss_pred             CCccEEEEeeEEEEcCCCCccccEEEEEEEEcCCCCcccccEEEcCCCCccceeEEEEEEcC
Confidence            499999999999993   5699999999999999999999999 999999999999999887

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=99.28  E-value=3.3e-12  Score=102.78  Aligned_cols=60  Identities=32%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             cCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCc-eeccceEecCCC-CCceeEEEEee
Q psy7947          97 LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGV-ILKVNAEFKSSD-KTIQVTVQVCT  156 (173)
Q Consensus        97 ~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~-~Ie~cI~~gSg~-~~vt~w~t~~~  156 (173)
                      +|++.||||||+|.+|+|    ++++|||+|+|+||+.+|. .+.+||+.+++. +..+.|.|+|.
T Consensus         1 ~~~~~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~~~~~~i~~~~~~~~~~~~~~S~v~   66 (184)
T PF14429_consen    1 PPTDYRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNIKPLPCIYSRSSGPSFVTSYYSSVY   66 (184)
T ss_dssp             ------EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS--B--S-EE-TTS--S-BS-EE----
T ss_pred             CCCceeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCccccceEECCCCCCCcceEEEEEEE
Confidence            589999999999999999    4569999999999999999 689999999888 89999999886

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=98.78  E-value=1.5e-08  Score=83.69  Aligned_cols=57  Identities=25%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             CCCceeEEeeecee---eccCCceEEEEEEEccCCc-eeccceEecCCCC-CceeEEEEeee
Q psy7947         101 VRNDLYVTLVNAEF---KSSDKTIQVTVQVCTEAGV-ILKVNAEFKSSDK-TIQVTVQVCTE  157 (173)
Q Consensus       101 ~RNDlYvTL~~GeF---ks~~kNiEVt~~V~~~~G~-~Ie~cI~~gSg~~-~vt~w~t~~~e  157 (173)
                      -||||||++.+++|   ++++|||+|+|+++++|+. ..-.||+.|+|.+ ..+...|.++=
T Consensus         1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~~~~l~~i~~g~~~~~~~~~~~S~V~y   62 (179)
T cd08696           1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDESQALPVIFKGSSPEEFLTEAYTAVTY   62 (179)
T ss_pred             CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCCCccceEEEeCCCCCccceeEEEEEEE
Confidence            39999999999999   6779999999999996433 2346777888887 77777777764

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=98.58  E-value=1.2e-07  Score=78.84  Aligned_cols=57  Identities=14%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             CCceeEEeeecee---e--ccCCceEEEEEEEccCCceec--cceEecCCCCCceeEEEEeeec
Q psy7947         102 RNDLYVTLVNAEF---K--SSDKTIQVTVQVCTEAGVILK--VNAEFKSSDKTIQVTVQVCTEA  158 (173)
Q Consensus       102 RNDlYvTL~~GeF---k--s~~kNiEVt~~V~~~~G~~Ie--~cI~~gSg~~~vt~w~t~~~er  158 (173)
                      ||+|||...++.|   |  +.+|||+|+|++|++||+..+  +||+.|+|++..+...|.+.--
T Consensus         2 ~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~~~~~l~~I~~g~g~~~~~~~~s~V~yh   65 (185)
T cd08697           2 KNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEEDAKPLKCIYYGPGGGFTTSAYAAVLHH   65 (185)
T ss_pred             cceEEEcccEEEecccccccccccEEEEEEEEeCCCCcCccceEEecCCCCCcceEEEEEEEEc
Confidence            8999999999999   2  679999999999999987554  5999999998777777776543

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3l4c_A	220	Structural Basis Of Membrane-Targeting By Dock180 L		3e-05

>pdb|3L4C|A Chain A, Structural Basis Of Membrane-Targeting By Dock180 Length = 220

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 97  LPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILK 136
           +PGDVRND+YVTLV  +F    K++ K ++VTV V  E G  L+
Sbjct: 21  MPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLE 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	99.9

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=99.90  E-value=1.7e-24  Score=181.78  Aligned_cols=69  Identities=36%  Similarity=0.439  Sum_probs=54.3

Q ss_pred             cCCCCccccCCCCCCceeEEeeecee----eccCCceEEEEEEEccCCceeccceEecCCCCCceeEEEEeee
Q psy7947          89 KMGFPEIILPGDVRNDLYVTLVNAEF----KSSDKTIQVTVQVCTEAGVILKVNAEFKSSDKTIQVTVQVCTE  157 (173)
Q Consensus        89 KlGFpevI~Pgd~RNDlYvTL~~GeF----ks~~kNiEVt~~V~~~~G~~Ie~cI~~gSg~~~vt~w~t~~~e  157 (173)
                      -|-|||||||||+||||||||++|+|    ++++|||||+|+||+++|+++++||+.|||+++++.|+|+++.
T Consensus        13 ~~~fpevI~Pgd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~Y   85 (220)
T 3l4c_A           13 GLVPRGSHMPGDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYY   85 (220)
T ss_dssp             -------------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCT
T ss_pred             CccccccccCCCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEE
Confidence            46799999999999999999999999    6789999999999999999999999999999999999999976

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00