Psyllid ID: psy8012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAEL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccHHHHHHHHHcccccccccccccHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHccccHHHccccccccHHHHHHHHHHHHHcccHHccccccccccHHHHHcccccccHHHHHHHccccHHHHHHcccccc
Coil and Loop (DISEMBL)
mgdpydpyvpyedhkpiaiaIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDevkkniedgacinvsSERCGSALIYAAWKGYEEIVDLLLDngadvnfksatgfTALHMACRFHDDDSIVRKLLRHGAyynvvdgktgktpllhagkgarEVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILegtkefgpgdynnfsllkvtkndaGETILDIAKKRGFPLLEELEKKLAEL
Flexible Loop (DISEMBL)
MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKnvrsnkydevkkniedgacinvsSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGtkefgpgdynNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAEL
Low Complexity Region (SEG)
MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPlleelekklael
Disordered region (IsUnstruct)
*******YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPL***********
Disordered Region (DISOPRED)
**DPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAEL
Disordered Region (DISEMBL)
MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAEL
Disordered Region (DISPRO)
**DPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q6NXT1	300	Ankyrin repeat domain-con	yes	N/A	0.361	0.326	0.377	6e-09
Q566C8	299	Ankyrin repeat domain-con	yes	N/A	0.361	0.327	0.377	7e-09
Q91WK7	299	Ankyrin repeat domain-con	yes	N/A	0.361	0.327	0.377	7e-09
Q9GZV1	360	Ankyrin repeat domain-con	no	N/A	0.605	0.455	0.324	8e-09
O90760	341	Putative ankyrin repeat p	N/A	N/A	0.357	0.284	0.386	1e-08
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.571	0.079	0.287	1e-08
Q07E30	475	Ankyrin repeat, SAM and b	N/A	N/A	0.579	0.330	0.281	1e-08
Q09YN0	475	Ankyrin repeat, SAM and b	yes	N/A	0.579	0.330	0.291	1e-08
A0M8T3	475	Ankyrin repeat, SAM and b	N/A	N/A	0.619	0.353	0.298	1e-08
Q8NFD2	765	Ankyrin repeat and protei	no	N/A	0.590	0.209	0.288	1e-08

>sp|Q6NXT1|ANR54_HUMAN Ankyrin repeat domain-containing protein 54 OS=Homo sapiens GN=ANKRD54 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 8/106 (7%)

Query: 77  LKNVR----SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
           LK +R    +N  + V++ +EDGA    + ++  +AL +A+  G ++IV LLLD+GAD N
Sbjct: 111 LKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPN 170

Query: 133 FKSATGFTALHM-ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
            +   G T LH+ AC  H    ++  LLR GA  + +D + G+TPL
Sbjct: 171 QRDGLGNTPLHLAACTNH--VPVITTLLRGGARVDALD-RAGRTPL 213

Plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.
Homo sapiens (taxid: 9606)

>sp|Q566C8|ANR54_RAT Ankyrin repeat domain-containing protein 54 OS=Rattus norvegicus GN=Ankrd54 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 8/106 (7%)

Query: 77  LKNVR----SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
           LK +R    +N  + V++ +EDGA    + ++  +AL +A+  G ++IV LLLD+GAD N
Sbjct: 110 LKRLRDSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPN 169

Query: 133 FKSATGFTALHM-ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
            +   G T LH+ AC  H    ++  LLR GA  + +D + G+TPL
Sbjct: 170 QQDGLGNTPLHLAACTNH--VPVITTLLRGGARVDALD-RAGRTPL 212

Plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q91WK7|ANR54_MOUSE Ankyrin repeat domain-containing protein 54 OS=Mus musculus GN=Ankrd54 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 63/106 (59%), Gaps = 8/106 (7%)

Query: 77  LKNVR----SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
           LK +R    +N  + V++ +EDGA    + ++  +AL +A+  G ++IV LLLD+GAD N
Sbjct: 110 LKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPN 169

Query: 133 FKSATGFTALHM-ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
            +   G T LH+ AC  H    ++  LLR GA  + +D + G+TPL
Sbjct: 170 QQDGLGNTPLHLAACTNH--VPVITTLLRGGARVDALD-RAGRTPL 212

Plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.

Mus musculus (taxid: 10090)

>sp|Q9GZV1|ANKR2_HUMAN Ankyrin repeat domain-containing protein 2 OS=Homo sapiens GN=ANKRD2 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
           FLK     K   ++K + DG   +   +   +AL  A+ +G+ EI++ LLDNGA V+F+ 
Sbjct: 152 FLKAAVEGKMKVIEKFLADGGSADTCDQFRRTALHRASLEGHMEILEKLLDNGATVDFQD 211

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYF 194
               TA+H ACR    + +V+ L  HGA  NV D K   TPL  A + G  E+    L  
Sbjct: 212 RLDCTAMHWACRGGHLE-VVKLLQSHGADTNVRD-KLLSTPLHVAVRTGQVEIVEHFLSL 269

Query: 195 IHEIFKLMANNDTTI-----LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249
             EI       DT +     L+R   +K L+L G                +TKN AG+T 
Sbjct: 270 GLEINARDREGDTALHDAVRLNRYKIIKLLLLHGAD-------------MMTKNLAGKTP 316

Query: 250 LDIAK 254
            D+ +
Sbjct: 317 TDLVQ 321

May play an important role in skeletal muscle hypertrophy.

Homo sapiens (taxid: 9606)

>sp|O90760|V031_FOWPN Putative ankyrin repeat protein FPV031 OS=Fowlpox virus (strain NVSL) GN=ANK3 PE=4 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI-VDLLLDNGADVNFKSATGF 139
           R N +  V+  + +GA IN  S  CG+  ++ A K    I VD+LL +GA+ N  +  GF
Sbjct: 68  RFNSHQLVELLLNNGAIINQRSLTCGNTALHLAVKNDNRITVDILLFHGANTNITNNDGF 127

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGK---TGKTPL 177
           T LH A  ++    I++KLLR+ A  N+ D +   TG TPL
Sbjct: 128 TPLHKAVIYNASIDIIKKLLRYKADVNIRDNEEENTGLTPL 168

Vertebrata (taxid: 7742)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 19/174 (10%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE------------ER 63
           PI +A  +G   IV +L +HGA  +     + + A  +A  + + E            E 
Sbjct: 419 PIHVAAFMGHVNIVSQLMHHGASPNT-TNVRGETALHMAARSGQAEVVRYLVQDGAQVEA 477

Query: 64  KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
           KA +D   L++    + R  K D V++ ++ GA  N ++    + L  AA +G+E++   
Sbjct: 478 KAKDDQTPLHI----SARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAF 533

Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           LLD+GA ++  +  GFT LH+A ++   + +   LL+  A  +   GK+G TPL
Sbjct: 534 LLDHGASLSITTKKGFTPLHVAAKYGKLE-VASLLLQKSASPDAA-GKSGLTPL 585

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q07E30|ASZ1_NEONE Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Neofelis nebulosa GN=ASZ1 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 35/192 (18%)

Query: 7   PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAI 66
           P +P E ++    A+  GD  +V+EL + G  +D        ++ R   + L      + 
Sbjct: 40  PLLPEEKNETFKKALTTGDISLVQELLDSGLSVD--------SSFRYGWTPLMYAASVSN 91

Query: 67  NDLLRLNLDFLKNVRSNKYDEVKKNIEDGACI----------------------NVSSER 104
            +L+R+ LD   N     +D+ K+ I   AC                       NV+  R
Sbjct: 92  VELVRVLLDRGANA---SFDKDKQTILITACSARGSEEQILKCVELLLSRNADPNVACRR 148

Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
             + ++YAA  G+ ++V LL+ +GA+VN +   G+TAL  A R     ++V KLL  GA 
Sbjct: 149 LMTPIMYAARDGHPQVVALLVAHGAEVNAQDENGYTALTWAAR-QGHKNVVLKLLELGA- 206

Query: 165 YNVVDGKTGKTP 176
             ++  K GKTP
Sbjct: 207 NKMLQTKDGKTP 218

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Neofelis nebulosa (taxid: 61452)

>sp|Q09YN0|ASZ1_RABIT Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Oryctolagus cuniculus GN=ASZ1 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 35/192 (18%)

Query: 7   PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAI 66
           P    E ++    A+  GD  +VKEL + G  +D        ++ R   + L      A 
Sbjct: 40  PLPIEEKNETFKKALTTGDTSLVKELLDSGISVD--------SSFRYGWTPLMYAASVAN 91

Query: 67  NDLLRLNLDFLKNVRSNKYDEVKKNIEDGACI----------------------NVSSER 104
            +L+R+ LD   N     +D+ K+ I   AC                       NV+  R
Sbjct: 92  VELVRVLLDRGANA---SFDKDKQTILITACSARGSEEQILKCVELLLSRNADPNVACRR 148

Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
             + ++YAA  G+ ++V LL+ +GA+VN +   G+TAL  A R     S+V KLL  GA 
Sbjct: 149 LMTPIMYAARDGHPQVVALLVAHGAEVNIQDENGYTALTWAAR-QGHKSVVLKLLELGA- 206

Query: 165 YNVVDGKTGKTP 176
              +  K GKTP
Sbjct: 207 NKTLQTKDGKTP 218

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Oryctolagus cuniculus (taxid: 9986)

>sp|A0M8T3|ASZ1_FELCA Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Felis catus GN=ASZ1 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 13/181 (7%)

Query: 7   PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEI---YSKNKAAARIAHSALE--LE 61
           P +P E ++    A+  GD  +V+EL + G  +D      ++    AA +++  L   L 
Sbjct: 40  PLLPEEKNETFKKALTTGDISLVQELLDSGLSVDSSFRYGWTPLMYAASVSNVELVRVLL 99

Query: 62  ERKAINDLLRLNLDFLKNVRSNKYDE------VKKNIEDGACINVSSERCGSALIYAAWK 115
           +R A     + N   L    S +  E      V+  +   A  NV+  R  + ++YAA  
Sbjct: 100 DRGANASFEKDNQTILITACSARGSEEQILKCVELLLSRNADPNVACRRLMTPIMYAARD 159

Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 175
           G+ ++V LL+ +GA+VN +   G+TAL  A R     ++V KLL  GA   ++  K GKT
Sbjct: 160 GHPQVVALLVAHGAEVNTQDENGYTALTWAAR-QGHKNVVLKLLELGA-NKMLQTKDGKT 217

Query: 176 P 176
           P
Sbjct: 218 P 218

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Felis catus (taxid: 9685)

>sp|Q8NFD2|ANKK1_HUMAN Ankyrin repeat and protein kinase domain-containing protein 1 OS=Homo sapiens GN=ANKK1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 17/177 (9%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
           E   P+ +A   G   +VK L + GA++D    ++ +      H A+E  + +AI  LL+
Sbjct: 493 EGKTPLHVAAYFGHVSLVKLLTSQGAELD----AQQRNLRTPLHLAVERGKVRAIQHLLK 548

Query: 72  LN-----LD------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI 120
                  LD              KY   K  +  GA + + + +  + L  AA+KG+ EI
Sbjct: 549 SGAVPDALDQSGYGPLHTAAARGKYLICKMLLRYGASLELPTHQGWTPLHLAAYKGHLEI 608

Query: 121 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           + LL ++ A++    A  +T LH+A R H ++++V  LL+ GA  N  + ++G TPL
Sbjct: 609 IHLLAESHANMGALGAVNWTPLHLAAR-HGEEAVVSALLQCGADPNAAE-QSGWTPL 663

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
194771252	909	GF19976 [Drosophila ananassae] gi|190617	0.704	0.210	0.303	4e-15
353328688	768	ankyrin repeat domain protein, partial [	0.830	0.292	0.274	6e-15
321272302	2474	ankyrin repeat protein [Wolbachia endosy	0.704	0.077	0.303	6e-15
225630441	2474	ankyrin repeat domain protein [Wolbachia	0.704	0.077	0.303	6e-15
321272354	2474	ankyrin repeat protein [Wolbachia endosy	0.704	0.077	0.303	7e-15
383858766	2315	PREDICTED: uncharacterized protein LOC10	0.439	0.051	0.410	1e-11
398337377	432	hypothetical protein LkmesMB_18507 [Lept	0.590	0.370	0.354	7e-11
296125273	382	ankyrin [Brachyspira murdochii DSM 12563	0.394	0.280	0.403	4e-10
405977020	1160	Ankyrin-1 [Crassostrea gigas]	0.627	0.146	0.309	6e-10
392935567	169	Chain B, Crystal Structure Of A Designed	0.424	0.680	0.398	1e-09

>gi|194771252|ref|XP_001967653.1| GF19976 [Drosophila ananassae] gi|190617400|gb|EDV32924.1| GF19976 [Drosophila ananassae]

 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA   G   +++ L  +GA     +Y+   A  ++    LE+   K + +LL    +
Sbjct: 119 PMHIAANFGYKDVIEVLLKNGA-----VYN---AVDKLCRRPLEMTNDKDVINLLASTEN 170

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
             + V+ N   EV+  I+ GA +N  +    + L YAAWKGY+ +V++LL N A+ N   
Sbjct: 171 LFEAVKRNSSSEVENYIKAGAFVNAKNADSVTPLYYAAWKGYDGVVNILLQNKANPNVVG 230

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
             GFT LH A +F     +V+ LL +GA YN V   +GKTP   +     +  T L   +
Sbjct: 231 NKGFTPLHYAAKF-SHLKVVKALLSNGAVYNAV-SDSGKTP---SDFTVDKSITSLFKLV 285

Query: 196 HEIFKLMANNDTTILDRLDEMKSL 219
            E FK + + +  +++ L+++K +
Sbjct: 286 SESFKKVKDGNAQVINDLNKIKDI 309

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|353328688|ref|ZP_08971015.1| ankyrin repeat domain protein, partial [Wolbachia endosymbiont wVitB of Nasonia vitripennis]

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 26/251 (10%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA   G   +++ L  +GA     +Y+   A  ++    LE+   K + +LL     
Sbjct: 144 PMHIAANFGYKDVIEVLLKNGA-----VYN---AVDKLCRRPLEMTNDKDVINLLASTEK 195

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
             + V+ N   EV+  I+ GA +N  +    + L YAAWKGY+ +V++LL N A+ N   
Sbjct: 196 LFEAVKRNSSSEVENYIKAGAFVNAKNADSVTPLYYAAWKGYDGVVNILLQNKANPNVVG 255

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
             GFT LH A +F     +V+ LL +GA YN V   +GKTP   +     +  T L   +
Sbjct: 256 NKGFTPLHYAAKF-SHLKVVKALLSNGAVYNAV-SDSGKTP---SDFTVDKSITSLFKLV 310

Query: 196 HEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKK 255
            E FK + + +  +++ L+++K             D +    +   +N   +T++  A  
Sbjct: 311 SESFKKVKDGNAQVINDLNKIK-------------DIDTVKAVMSARNRENKTLVVAAVH 357

Query: 256 RGFPLLEELEK 266
             F  +E+L++
Sbjct: 358 SNFSKVEQLKQ 368

Source: Wolbachia endosymbiont wVitB of Nasonia vitripennis

Species: Wolbachia endosymbiont of Nasonia vitripennis

Genus: Wolbachia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|321272302|gb|ADW80187.1| ankyrin repeat protein [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1]

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 13/204 (6%)

Query: 16   PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            P+ IA   G   +++ L  +GA     +Y+   A  ++    LE+   K + +LL     
Sbjct: 1684 PMHIAANFGYKDVIEVLLKNGA-----VYN---AVDKLCRRPLEMTNDKDVINLLASTEK 1735

Query: 76   FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
              + V+ N   EV+  I+ GA +N  +    + L YAAWKGY+ +V++LL N A+ N   
Sbjct: 1736 LFEAVKRNSSSEVENYIKAGAFVNAKNADSVTPLYYAAWKGYDGVVNILLQNKANPNVVG 1795

Query: 136  ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
              GFT LH A +F     +V+ LL +GA YN V   +GKTP   +     +  T L   +
Sbjct: 1796 NKGFTPLHYAAKF-SHLKVVKALLSNGAVYNAV-SDSGKTP---SDFTVDKSITSLFKLV 1850

Query: 196  HEIFKLMANNDTTILDRLDEMKSL 219
             E FK + + +  +++ L+++K +
Sbjct: 1851 SESFKKVKDGNAQVINDLNKIKDI 1874

Source: Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1

Species: Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1

Superkingdom: Viruses

>gi|225630441|ref|YP_002727232.1| ankyrin repeat domain protein [Wolbachia sp. wRi] gi|225592422|gb|ACN95441.1| ankyrin repeat domain protein [Wolbachia sp. wRi]

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 13/204 (6%)

Query: 16   PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            P+ IA   G   +++ L  +GA     +Y+   A  ++    LE+   K + +LL     
Sbjct: 1684 PMHIAANFGYKDVIEVLLKNGA-----VYN---AVDKLCRRPLEMTNDKDVINLLASTEK 1735

Query: 76   FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
              + V+ N   EV+  I+ GA +N  +    + L YAAWKGY+ +V++LL N A+ N   
Sbjct: 1736 LFEAVKRNSSSEVENYIKAGAFVNAKNADSVTPLYYAAWKGYDGVVNILLQNKANPNVVG 1795

Query: 136  ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
              GFT LH A +F     +V+ LL +GA YN V   +GKTP   +     +  T L   +
Sbjct: 1796 NKGFTPLHYAAKF-SHLKVVKALLSNGAVYNAV-SDSGKTP---SDFTVDKSITSLFKLV 1850

Query: 196  HEIFKLMANNDTTILDRLDEMKSL 219
             E FK + + +  +++ L+++K +
Sbjct: 1851 SESFKKVKDGNAQVINDLNKIKDI 1874

Source: Wolbachia sp. wRi

Species: Wolbachia sp. wRi

Genus: Wolbachia

Family: Anaplasmataceae

Order: Rickettsiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|321272354|gb|ADW80235.1| ankyrin repeat protein [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB]

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 13/204 (6%)

Query: 16   PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            P+ IA   G   +++ L  +GA     +Y+   A  ++    LE+   K + +LL     
Sbjct: 1684 PMHIAANFGYKDVIEVLLKNGA-----VYN---AVDKLCRRPLEMTNDKDVINLLASTEK 1735

Query: 76   FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
              + V+ N   EV+  I+ GA +N  +    + L YAAWKGY+ +V++LL N A+ N   
Sbjct: 1736 LFEAVKRNSSSEVENYIKAGAFVNAKNADSVTPLYYAAWKGYDGVVNILLQNKANPNVVG 1795

Query: 136  ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
              GFT LH A +F     +V+ LL +GA YN V   +GKTP   +     +  T L   +
Sbjct: 1796 NKGFTPLHYAAKF-SHLKVVKALLSNGAVYNAV-SDSGKTP---SDFTVDKSITSLFKLV 1850

Query: 196  HEIFKLMANNDTTILDRLDEMKSL 219
             E FK + + +  +++ L+++K +
Sbjct: 1851 SESFKKVKDGNAQVINDLNKIKDI 1874

Source: Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB

Species: Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB

Superkingdom: Viruses

>gi|383858766|ref|XP_003704870.1| PREDICTED: uncharacterized protein LOC100882592 [Megachile rotundata]

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 10/129 (7%)

Query: 80   VRSNKYDEVKKNIEDGACINV---SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
            V+ N   +V+K I+ GA +N    S    G++L YAAWKGY+EI+++LL N A+ N   +
Sbjct: 1651 VKHNNASQVEKCIKSGAFVNAKYASKGYDGTSLHYAAWKGYDEIINILLQNKANPNMAGS 1710

Query: 137  TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTV-LLYFI 195
             GFT LH A +F     IV  LL +GA YN      GKTPL      A + N + LL  +
Sbjct: 1711 KGFTPLHYAAKF-SHLKIVMVLLSNGAVYNAA-SIGGKTPL----DFAVDKNIINLLKLV 1764

Query: 196  HEIFKLMAN 204
            +E FK + N
Sbjct: 1765 NESFKNVKN 1773

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|398337377|ref|ZP_10522082.1| hypothetical protein LkmesMB_18507 [Leptospira kmetyi serovar Malaysia str. Bejo-Iso9]

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 98/172 (56%), Gaps = 12/172 (6%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKE--------IYSKNKAAARIAHSALELEERKAIN 67
           PIA+A+  G+  +VK L  +GAQI+ +        + S +   A + + A +  +   I+
Sbjct: 242 PIALAVSHGNLDLVKILIENGAQINVKPGRVAPLLLASHSNHPAIVKYLAKKGADVNFIS 301

Query: 68  DLLRLNLDFLKNVRSNKYDEVKKNIED-GACINVSSERCG-SALIYAAWKGYEEIVDLLL 125
            +   N+  L+   S+ + EV + + D GA  N+SS++ G + L +AA +G  +I+ LLL
Sbjct: 302 TVNAGNITALELACSSNFTEVVEELLDHGANPNISSQKDGRTPLFFAAVEGNNDIIKLLL 361

Query: 126 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           + GADVN +S +GFTAL  A  F   ++ V+ L++ GA  NVVD   G TPL
Sbjct: 362 NEGADVNVRSKSGFTALFDAVGFGKIET-VKLLIKKGADVNVVD-LDGDTPL 411

Source: Leptospira kmetyi serovar Malaysia str. Bejo-Iso9

Species: Leptospira kmetyi

Genus: Leptospira

Family: Leptospiraceae

Order: Spirochaetales

Class: Spirochaetia

Phylum: Spirochaetes

Superkingdom: Bacteria

>gi|296125273|ref|YP_003632525.1| ankyrin [Brachyspira murdochii DSM 12563] gi|296017089|gb|ADG70326.1| Ankyrin [Brachyspira murdochii DSM 12563]

 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 72  LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
           +N+  +K V +N  + +KK IEDGA IN+      + LI+A+  GYE+IV  LL NGAD+
Sbjct: 27  VNIPIIKAVANNDINNLKKLIEDGADINIKDTEGNTPLIWASLLGYEKIVKELLSNGADI 86

Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           N  ++ G T + MA     ++S VR+L+  GA  N+ + K G T L+ A
Sbjct: 87  NMGNSFGNTPI-MAAVLEGNNSTVRELISSGADLNLKN-KDGWTALMWA 133

Source: Brachyspira murdochii DSM 12563

Species: Brachyspira murdochii

Genus: Brachyspira

Family: Brachyspiraceae

Order: Spirochaetales

Class: Spirochaetia

Phylum: Spirochaetes

Superkingdom: Bacteria

>gi|405977020|gb|EKC41492.1| Ankyrin-1 [Crassostrea gigas]

 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 11/181 (6%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA    + +I+ EL   G  ++ +   +N +      +  +++E K  ND+      
Sbjct: 591 PVHIASAFNNTEILGELIEIGVDVNLKTTDENFSTPLTLATGNDIDETKE-NDMR----- 644

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
             K+   N+   ++  + +GACIN+  E   S L  A   G ++IV LLL NGAD +   
Sbjct: 645 --KSSHLNRRGMIQLLLSNGACINLCKENGASPLYIACQSGNDDIVQLLLSNGADTDLCM 702

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 195
             G + LH+AC+  ++D IV+ LL +GA  N +  K G  PL  A     E NTV +   
Sbjct: 703 KDGASPLHIACQ-EENDIIVQTLLSNGANIN-LSMKDGTRPLFKACHEGHE-NTVKVLLQ 759

Query: 196 H 196
           H
Sbjct: 760 H 760

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|392935567|pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   ++  + L  AAW G+ EIV++LL +GADVN + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G+T LH+A   +    IV  LL++GA  N  D   G TPL L A +G  E+  VLL
Sbjct: 78  TDGWTPLHLAAD-NGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLEIVEVLL 133

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
UNIPROTKB|Q2KI59	151	PSMD10 "Proteasome (Prosome, m	0.435	0.781	0.352	3.7e-09
UNIPROTKB|F1SKL6	299	ANKRD54 "Uncharacterized prote	0.409	0.371	0.358	4.8e-09
UNIPROTKB|Q6NXT1	300	ANKRD54 "Ankyrin repeat domain	0.409	0.37	0.358	4.8e-09
MGI|MGI:2444209	299	Ankrd54 "ankyrin repeat domain	0.409	0.371	0.358	6.3e-09
RGD|1309552	299	Ankrd54 "ankyrin repeat domain	0.409	0.371	0.358	6.3e-09
UNIPROTKB|Q566C8	299	Ankrd54 "Ankyrin repeat domain	0.409	0.371	0.358	6.3e-09
UNIPROTKB|F1NBL4	245	LOC100858286 "Uncharacterized	0.354	0.391	0.386	8.8e-09
UNIPROTKB|O15084	1053	ANKRD28 "Serine/threonine-prot	0.642	0.165	0.314	1.1e-08
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.642	0.168	0.302	1.4e-08
FB|FBgn0011747	1549	Ank "Ankyrin" [Drosophila mela	0.723	0.126	0.281	1.8e-08

UNIPROTKB|Q2KI59 PSMD10 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 10" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 43/122 (35%), Positives = 63/122 (51%)

Query:    73 NLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
             NL       S K +E+K+ I  D +    + +   +AL +A   G+ EIV+ LL  G  V
Sbjct:     7 NLMICNLAYSGKLEELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66

Query:   132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTV 190
             N K   G++ LH+A     D+ IV+ LL  GA  N V+ + G TPL +A  K   E+  +
Sbjct:    67 NDKDDAGWSPLHIAASAGRDE-IVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVM 124

Query:   191 LL 192
             LL
Sbjct:   125 LL 126

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1SKL6 ANKRD54 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query:    64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             K ++ L RL      +  +N  + V++ +EDGA    + ++  +AL +A+  G ++IV L
Sbjct:   105 KEVHALKRLR----DSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQL 160

Query:   124 LLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             LLD+GAD N +   G T LH+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   161 LLDHGADPNQRDGLGNTPLHLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 216

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0010627 "regulation of intracellular protein kinase cascade" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6NXT1 ANKRD54 "Ankyrin repeat domain-containing protein 54" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query:    64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             K ++ L RL      +  +N  + V++ +EDGA    + ++  +AL +A+  G ++IV L
Sbjct:   106 KEVHALKRLR----DSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQL 161

Query:   124 LLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             LLD+GAD N +   G T LH+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   162 LLDHGADPNQRDGLGNTPLHLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 217

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0010627 "regulation of intracellular protein kinase cascade" evidence=ISS

MGI|MGI:2444209 Ankrd54 "ankyrin repeat domain 54" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query:    64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             K ++ L RL      +  +N  + V++ +EDGA    + ++  +AL +A+  G ++IV L
Sbjct:   105 KEVHALKRLR----DSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQL 160

Query:   124 LLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             LLD+GAD N +   G T LH+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   161 LLDHGADPNQQDGLGNTPLHLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 216

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA

GO:0007049 "cell cycle" evidence=IDA

GO:0010627 "regulation of intracellular protein kinase cascade" evidence=IDA

GO:0019887 "protein kinase regulator activity" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IDA

GO:0045859 "regulation of protein kinase activity" evidence=IDA

RGD|1309552 Ankrd54 "ankyrin repeat domain 54" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query:    64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             K ++ L RL      +  +N  + V++ +EDGA    + ++  +AL +A+  G ++IV L
Sbjct:   105 KEVHALKRLR----DSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQL 160

Query:   124 LLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             LLD+GAD N +   G T LH+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   161 LLDHGADPNQQDGLGNTPLHLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 216

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=IEA;ISO

GO:0010627 "regulation of intracellular protein kinase cascade" evidence=IEA;ISO;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA;ISO

GO:0030496 "midbody" evidence=IEA;ISO;ISS

GO:0032403 "protein complex binding" evidence=IEA;ISO

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA;ISO;ISS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

UNIPROTKB|Q566C8 Ankrd54 "Ankyrin repeat domain-containing protein 54" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 43/120 (35%), Positives = 68/120 (56%)

Query:    64 KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             K ++ L RL      +  +N  + V++ +EDGA    + ++  +AL +A+  G ++IV L
Sbjct:   105 KEVHALKRLR----DSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQL 160

Query:   124 LLDNGADVNFKSATGFTALHMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             LLD+GAD N +   G T LH+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   161 LLDHGADPNQQDGLGNTPLHLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 216

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

UNIPROTKB|F1NBL4 LOC100858286 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 39/101 (38%), Positives = 58/101 (57%)

Query:    83 NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
             N  D V++ +EDG     + ++  +AL +A+  G + IV LLLD+GAD N +   G T L
Sbjct:    67 NDLDTVQQLLEDGTDPCAADDKGRTALHFASCNGNDHIVQLLLDHGADPNQRDGLGNTPL 126

Query:   143 HMA-CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
             H+A C  H    ++  LLR GA  + +D + G+TPL H  K
Sbjct:   127 HLAACTNHVP--VITTLLRGGARVDALD-RAGRTPL-HLAK 163

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0010627 "regulation of intracellular protein kinase cascade" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0045648 "positive regulation of erythrocyte differentiation" evidence=IEA

UNIPROTKB|O15084 ANKRD28 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 61/194 (31%), Positives = 96/194 (49%)

Query:    12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
             +D + I  A  +G  ++VK L +HGA    E+  K+K +    H+A        +  LL 
Sbjct:   172 KDRRAIHWAAYMGHIEVVKLLVSHGA----EVTCKDKKSYTPLHAAASSGMISVVKYLLD 227

Query:    72 LNLDFLK-NVRSNK------YD--EVKKN--IEDGACINVSSERCGSALIYAAWKGYEEI 120
             L +D  + N   N       Y+  +V  N  I+ GA +N  +E+  + L +AA   +  +
Sbjct:   228 LGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGAL 287

Query:   121 -VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
              ++LL+ NGADVN KS  G T LHM    H   S  + +++ GA  +  D K G TPL  
Sbjct:   288 CLELLVGNGADVNMKSKDGKTPLHMTA-LHGRFSRSQTIIQSGAVIDCED-KNGNTPLHI 345

Query:   180 AGKGARE--VNTVL 191
             A +   E  +NT++
Sbjct:   346 AARYGHELLINTLI 359

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 56/185 (30%), Positives = 87/185 (47%)

Query:    16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL- 74
             P++ A   G   +V+ L  HGAQ D +        +  A +  E   +  +    R +  
Sbjct:   742 PLSSAAATGHESVVRLLLKHGAQADSKDDDCRTPLSYAASNGYESVVKLLLEHGARADSK 801

Query:    75 --DF---LKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
               DF   L    S  Y+ V K + E GA  +   +   + L YAA +GYE +V +LL+NG
Sbjct:   802 DDDFRTPLSYAASYGYESVVKLLLEHGARTDSKDKDSQTPLSYAASRGYESVVRILLENG 861

Query:   129 ADVNFKSATGFTAL-HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 187
             A  N +     T L + A + H+  S+VR LL++GA  +  +  +G+TPL +A     E 
Sbjct:   862 ARANSRDKDSHTPLSYAASKGHE--SVVRLLLQYGAQADS-ETSSGQTPLSYAASHGHEF 918

Query:   188 NTVLL 192
                LL
Sbjct:   919 VVKLL 923

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0011747 Ank "Ankyrin" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 58/206 (28%), Positives = 96/206 (46%)

Query:    12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALE------LEERKA 65
             E   P+ +A ++G+  I+  L  HGA+I+ +   K  A    A    E      LE    
Sbjct:   496 EGQTPLHVASRLGNINIIMLLLQHGAEINAQSNDKYSALHIAAKEGQENIVQVLLENGAE 555

Query:    66 INDLLRLNLDFLKNV-RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
              N + +     L    +  K + V+  +++GA I+   +   + L  A       IV+LL
Sbjct:   556 NNAVTKKGFTPLHLACKYGKQNVVQILLQNGASIDFQGKNDVTPLHVATHYNNPSIVELL 615

Query:   125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGA 184
             L NG+  N  +  G  A+H+AC+ +  + I  +LL+HGA  N++  K+G +PL  A +G 
Sbjct:   616 LKNGSSPNLCARNGQCAIHIACKKNYLE-IAMQLLQHGADVNIIS-KSGFSPLHLAAQGG 673

Query:   185 REVNTVLLYFIHEIFKLMANNDTTIL 210
               V+ V L   + +    A N  T L
Sbjct:   674 N-VDMVQLLLEYGVISAAAKNGLTPL 698

GO:0045170 "spectrosome" evidence=IDA;TAS

GO:0045169 "fusome" evidence=NAS;IDA

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008092 "cytoskeletal protein binding" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	271
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.5 bits (199), Expect = 4e-19
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
             +   + VK  +E+GA +N       + L  AA  G+ EIV LLL+ GADVN +   G 
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGN 74

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           T LH+A R  + D +V+ LL+HGA  N  D K G+TPL  A   G  EV  +LL
Sbjct: 75  TPLHLAARNGNLD-VVKLLLKHGADVNARD-KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            ++   + VK  +E GA +N+      +AL  AA  G  EIV LLL++GADVN K   G 
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGN 62

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
           TALH+A R  + + IV+ LL HGA  N+ D
Sbjct: 63  TALHLAARNGNLE-IVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
           + L  AA  G+ E+V LLL+NGADVN K   G T LH+A + +    IV+ LL  GA  N
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-NGHLEIVKLLLEKGADVN 67

Query: 167 VVDGKTGKTPLLHA 180
             D K G TPL  A
Sbjct: 68  ARD-KDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.2 bits (154), Expect = 1e-12
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
            +   P+ +A   G  ++VK L  +GA ++ +            H A             
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP----LHLA------------- 47

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
                     ++   + VK  +E GA +N   +   + L  AA  G  ++V LLL +GAD
Sbjct: 48  ---------AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD 98

Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLL 159
           VN +   G T LH+A + +    +V+ LL
Sbjct: 99  VNARDKDGRTPLHLAAK-NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
           L  AA  G  E+V LLL+ GADVN       TALH+A R + +  IV+ LL HGA  N  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVNAK 57

Query: 169 DGKTGKTPLLHA 180
           D K G T L  A
Sbjct: 58  D-KDGNTALHLA 68

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
           E   P+  AI+ GD +IV+    HGA I       N    +I H  L   +  A +D+++
Sbjct: 34  ETTTPLIDAIRSGDAKIVELFIKHGADI-------NHINTKIPHPLLTAIKIGA-HDIIK 85

Query: 72  LNLD-----FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD 126
           L +D      +  +   + D +K  ++ G  +N+      + L YA  KG  E + +L +
Sbjct: 86  LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145

Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
            GADVN +   G   +H+A + H+   I++ LL  GAY NV D   G++PL +A +
Sbjct: 146 YGADVNIEDDNGCYPIHIAIK-HNFFDIIKLLLEKGAYANVKD-NNGESPLHNAAE 199

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 74  LDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIY---AAWKGYEEIVDLLLDNGAD 130
            D+L N  +   +EV++ +  GA +N   E   + L      + +  ++IV LLL+ GAD
Sbjct: 16  YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD 75

Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           VN     GFT LH+         +++ L++ GA  N  D K G+TPL
Sbjct: 76  VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD-KVGRTPL 121

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.2 bits (149), Expect = 8e-11
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 17  IAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF 76
            AI+ +     IV+ L ++GA     +  KN     + H  LE  +      +L+L +D 
Sbjct: 112 YAISKKSNSYSIVEYLLDNGA----NVNIKNSDGENLLHLYLESNKID--LKILKLLID- 164

Query: 77  LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
            K V  N  + V   +  G  IN+      + L YA +    E V  LLD GA+ N  + 
Sbjct: 165 -KGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK 223

Query: 137 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
            G T LH+A   ++ + I + LL +G     + 
Sbjct: 224 YGDTPLHIAILNNNKE-IFKLLLNNGPSIKTII 255

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 66  INDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
            +D        L  + +    E+   +     +          L  AA KG ++IV LLL
Sbjct: 34  PSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLL 93

Query: 126 DNGADVNFKSATGFTALHMACRFHDDD----SIVRKLLRHGAYY--NVVDGKTGKTPLLH 179
            +GADVN K A G T LH+A    +       + + LL  GA    N +  + G TPL  
Sbjct: 94  ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW 153

Query: 180 A-GKGAREVNTVLL 192
           A   G  ++  +LL
Sbjct: 154 AALNGDADIVELLL 167

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALI--YAAWKGYEEIVDLLLDNGADVNF 133
           +L        D V+  +E GA +N   ERCG   +  Y       +++ LL+  GADVN 
Sbjct: 54  YLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA 112

Query: 134 KSATGFTALHMACR-FHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           K   G T LH+    F+ +  ++R LLR GA  N +D   G TPL
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD-LYGMTPL 156

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQ--------IDKE-----------IYSKNKAAARIAHS 56
           P+  AI+IG   I+K L ++G          I+K+           +  K+       H 
Sbjct: 71  PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY 130

Query: 57  ALELEERKAINDLLRLNLDF-LKN----------VRSNKYDEVKKNIEDGACINVSSERC 105
           A++  + ++I  L     D  +++          ++ N +D +K  +E GA  NV     
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190

Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
            S L  AA  G    + LL+D+G  +  K   GFT LH A   H+  +I  +LL + A  
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAI--ELLINNASI 247

Query: 166 NVVDGKTGKTPLLHA 180
           N  D   G TPL HA
Sbjct: 248 NDQD-IDGSTPLHHA 261

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 28/116 (24%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +A + G+ ++VK L   GA ++         A  +A                        
Sbjct: 3   LAAKNGNLELVKLLLEKGADVN---LGDTDTALHLA------------------------ 35

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
             R+   + VK  +E GA +N   +   +AL  AA  G  EIV LLL++GAD+N K
Sbjct: 36  -ARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 30/160 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A +  +  +VK L ++GA I+                          N+   L+  
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADINS----------------------STKNNSTPLH-- 73

Query: 76  FLKNVRSNKYDE---VKKNIEDGACINVSSERCGSALIYAAWK--GYEEIVDLLLDNGAD 130
           +L N++ N  D    VK  +E GA +N       + L+YA  K      IV+ LLDNGA+
Sbjct: 74  YLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133

Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD 169
           VN K++ G   LH+       D  I++ L+  G   N  +
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN 173

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL 159
           +AL  AA  G  E+V  LL+ G D+N     G TALH+A    + + +++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLE-VLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 25/169 (14%)

Query: 25  DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK 84
           + +I K L ++GA I+ +   K         +AL          L  L L +        
Sbjct: 146 EAEITKLLLSYGADINMKDRHKGN-------TALHYATENKDQRLTELLLSY-------- 190

Query: 85  YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
                     GA +N+  +   S L +A     + IV +LL+NGA  + +   G T LH+
Sbjct: 191 ----------GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI 240

Query: 145 ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 193
           +  +  D  I++ LL HG   N      G T L  + K  R++  +L Y
Sbjct: 241 SVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEY 289

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 121 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             +LL  GAD N +   G T LH+AC  +    +VR LL  GA   ++D K GKTPL  A
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIAC-ANGHVQVVRVLLEFGADPTLLD-KDGKTPLELA 155

Query: 181 GK-GAREVNTVLLYFIHEIFKLMAN 204
            + G REV  +L       F+L AN
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGAN 180

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 21/134 (15%)

Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTV 190
           N +   G T LH+A   +    +V+ LL +GA  N  D   G+TPL  A   G  E+  +
Sbjct: 1   NARDEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKL 58

Query: 191 LLYFIHEIFKLMANNDT-----TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDA 245
           LL    ++     + +T          LD +K L+  G       D N        ++  
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA------DVNA-------RDKD 105

Query: 246 GETILDIAKKRGFP 259
           G T L +A K G  
Sbjct: 106 GRTPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 85  YDEVKKNIEDGAC---INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA 141
            +  K  +E GA     N+  E   + L +AA  G  +IV+LLL+ GAD N +++ G TA
Sbjct: 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183

Query: 142 LHMACRFHDDDSIVRKLLRHGAYYNV 167
           L  A +    + +V+ LL  G + ++
Sbjct: 184 LDPAAKNGRIE-LVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 4/83 (4%)

Query: 82  SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADVNFKSATGFT 140
           +N Y  VK  I+ GA +N  ++   + L YA  K  + +++++LLDNGADVN  +     
Sbjct: 419 TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQY 478

Query: 141 ALHMACRFHDDDSIVRKLLRHGA 163
            L +A  +H    IV  LL +GA
Sbjct: 479 PLLIALEYH---GIVNILLHYGA 498

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFK 134
           + L  AA  G+ E+V LLL+ GADVN +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 31/191 (16%)

Query: 5   YDP-YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEER 63
            +P +  Y+   PI +A++  D + +K L  HGA  D     K        H A+E  + 
Sbjct: 26  INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD----VKYPDIESELHDAVEEGDV 81

Query: 64  KAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVD 122
           KA+ +LL L   F  +V                         G   ++ A    + +I+ 
Sbjct: 82  KAVEELLDLG-KFADDVFYKD---------------------GMTPLHLATILKKLDIMK 119

Query: 123 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G 181
           LL+  GAD +  +   F+ LH+A    D   I   L+ H A  ++ D   G TPL+ A  
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGI-ELLIDHKACLDIEDC-CGCTPLIIAMA 177

Query: 182 KGAREVNTVLL 192
           KG   +  +LL
Sbjct: 178 KGDIAICKMLL 188

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 124 LLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           LL++G  D+N     G T LH+A ++   + +V+ LL+ G   N+ D   G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALE-LVQWLLKPGVDLNLRD-SDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 92  IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
           +E G     +++  G + L  AA  G  E+V  LL  G D+N + + G TAL +A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
             S + + VK  +E G  IN + E   +AL  AA  G  E++ LLL
Sbjct: 9   AISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 13/173 (7%)

Query: 7   PYVPYED-HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE---- 61
           P V Y D    +  A++ GD + V+EL + G   D   Y        +A    +L+    
Sbjct: 61  PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL 120

Query: 62  --ERKAINDLLRLNLDFLKN----VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK 115
              R A  D+   N D        V       ++  I+  AC+++      + LI A  K
Sbjct: 121 LIARGADPDIP--NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK 178

Query: 116 GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
           G   I  +LLD+GA++++    G  A       ++   IVR  ++ GA  N++
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM 231

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEE--IVDLLLDNGADVNF 133
            L++ +      V++ I  G     +     + L   A     +  +V  LL  G  +N 
Sbjct: 194 HLQSFKPRA-RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVL 191
           ++  G T LH A  F ++    R+L+  GA  N V    G TPL         R V   L
Sbjct: 253 RNRYGQTPLHYAAVF-NNPRACRRLIALGADINAVS-SDGNTPLSLMVRNNNGRAVRAAL 310

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
           G T LH+A R +    +V+ LL  GA  N  D
Sbjct: 2   GNTPLHLAAR-NGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 2/100 (2%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEI-VDLLLDNGADVNFKSATGFTALHMACRFHDDDS 153
           GA I   S++ G+AL +A       + V  L+D GA+VN K+    T LH AC+ +    
Sbjct: 398 GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLD 457

Query: 154 IVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 193
           ++  LL +GA  N ++ +  + PLL A +    VN +L Y
Sbjct: 458 VIEMLLDNGADVNAINIQN-QYPLLIALEYHGIVNILLHY 496

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGY---EEIVDLLLDNGADVNFKSATGFTALHMACRF 148
           I+ GA +N   +  G   ++    G+    +++ LLL  GADVN     G T L +  + 
Sbjct: 104 IKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162

Query: 149 HD-DDSIVRKLLRHGAYYNVVD 169
            + +  ++R L+  GA    VD
Sbjct: 163 RNANVELLRLLIDAGADVYAVD 184

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND----LLR 71
           PI  A + G+ ++V  L ++GA ++  I   + +    A  +  ++  KAI D    + +
Sbjct: 181 PIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDNRSNINK 239

Query: 72  LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK-GYEEIVDLLLDNGAD 130
            +L  LK +R+   +      + G  +N   +   + L +A+       +V  LL+ GAD
Sbjct: 240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD 299

Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTV 190
           VN K+  G T L++  +   D   +R L+  GA  N  D +   TPL  A    R  + V
Sbjct: 300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAAD-RLYITPLHQASTLDRNKDIV 358

Query: 191 L 191
           +
Sbjct: 359 I 359

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           +E GA +N     C + + YAA +G  ++V+LLL  GADVN  +    + L  A    + 
Sbjct: 165 LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNI 224

Query: 152 DSI 154
           D+I
Sbjct: 225 DTI 227

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG4412|consensus	226		100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4412|consensus	226		100.0
KOG0509|consensus	600		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0508|consensus	615		99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG4177|consensus	1143		99.97
KOG0509|consensus	600		99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4177|consensus	1143		99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
KOG0508|consensus	615		99.93
KOG0502|consensus	296		99.93
KOG0514|consensus	452		99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0502|consensus	296		99.88
KOG0507|consensus	854		99.88
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0505|consensus	527		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG4369|consensus	2131		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0505|consensus	527		99.87
KOG0514|consensus	452		99.86
KOG0512|consensus	228		99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0507|consensus	854		99.84
KOG0512|consensus	228		99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG4369|consensus	2131		99.78
KOG3676|consensus	782		99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG0195|consensus	448		99.76
KOG0195|consensus	448		99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG3676|consensus	782		99.69
KOG4214|consensus	117		99.61
KOG4214|consensus	117		99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
KOG0515|consensus	752		99.5
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
KOG0515|consensus	752		99.39
KOG1710|consensus	396		99.37
KOG1710|consensus	396		99.33
PF13606	30	Ank_3: Ankyrin repeat	99.07
KOG0818|consensus	669		99.0
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.99
KOG0782|consensus	1004		98.97
KOG0782|consensus	1004		98.89
KOG0783|consensus	1267		98.88
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0506|consensus	622		98.82
KOG0506|consensus	622		98.82
KOG0783|consensus	1267		98.77
KOG0818|consensus	669		98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.73
KOG0705|consensus	749		98.7
KOG0522|consensus	560		98.53
KOG0522|consensus	560		98.47
KOG0705|consensus	749		98.44
KOG0511|consensus	516		98.31
KOG3609|consensus	822		98.29
KOG3609|consensus	822		98.24
KOG2384|consensus	223		98.23
KOG0520|consensus	975		98.22
KOG0521|consensus	785		98.17
KOG0511|consensus	516		98.11
KOG0520|consensus	975		98.06
KOG0521|consensus	785		98.03
KOG2384|consensus	223		97.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.55
KOG2505|consensus	591		97.01
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.84
KOG2505|consensus	591		96.67
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.54
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.8
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.7
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.06

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.7e-39  Score=276.24  Aligned_cols=186  Identities=27%  Similarity=0.353  Sum_probs=121.3

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      ..+.+|.||||.|++.|+.+++++|++.|++++..+..|.||    ||.|+..|+.+++++|+++|+++-..+......+
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~----L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHP----LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            456789999999999999999999999999999999999999    9999999999999999998865422222223334


Q ss_pred             -HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012          88 -VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN  166 (271)
Q Consensus        88 -~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~  166 (271)
                       ++.+++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.|++++
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~g~~~n  184 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEKGAYAN  184 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCC
Confidence             5555555555555555555555555555555555555555555555555555555555554 55555555555555555


Q ss_pred             ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         167 VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       167 ~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      ..+. .|.||||+| ..|+.+++++|+++|+++.
T Consensus       185 ~~~~-~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        185 VKDN-NGESPLHNAAEYGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             CCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence            5544 455555555 5555555555555554443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-38  Score=277.74  Aligned_cols=239  Identities=23%  Similarity=0.238  Sum_probs=209.2

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH--------HHHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD--------FLKNV   80 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~--------~l~~a   80 (271)
                      .+..+.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+..|+.++++.|+..+..        +++.|
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~Tp----Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a  108 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTP----LHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDA  108 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHCccHhHHHHHHHHHhccccccchhhHHHH
Confidence            35578999999999999999999999999999999999999    9999999999999999986432        24444


Q ss_pred             HhcCh---------------------------------HH-HHHHHhcCCCCccCCCC-CCcHHHHHHHhCCHHHHHHHH
Q psy8012          81 RSNKY---------------------------------DE-VKKNIEDGACINVSSER-CGSALIYAAWKGYEEIVDLLL  125 (271)
Q Consensus        81 ~~~~~---------------------------------~~-~~~ll~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll  125 (271)
                      +..++                                 .+ +++|++.|++++..+.. |.||||+|+..|+.+++++|+
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            43332                                 34 77888889999999988 999999999999999999999


Q ss_pred             HCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hc-CCchHHHHHHhchhhHHHHhh
Q psy8012         126 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK-GAREVNTVLLYFIHEIFKLMA  203 (271)
Q Consensus       126 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~-~~~~~~~~L~~~g~~~~~~~~  203 (271)
                      +.|++++..+..|+||||.|+.. ++.+++++|++.|++++.++. .|.||||+| .. ++.+++++|+++|++++....
T Consensus       189 ~~gad~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~ga~in~~d~-~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        189 SYGANVNIPDKTNNSPLHHAVKH-YNKPIVHILLENGASTDARDK-CGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence            99999999999999999999998 999999999999999999998 999999999 55 789999999999999987766


Q ss_pred             cCCccccc----chHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC-CCcHHHHHH
Q psy8012         204 NNDTTILD----RLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG-FPLLEELEK  266 (271)
Q Consensus       204 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~-~~~~~~ll~  266 (271)
                      ..+.++++    ..+.+++|+..|++             ++.+|..|.||||+|++.+ ..++.++|-
T Consensus       267 ~~g~TpLh~A~~~~~~v~~Ll~~gad-------------in~~d~~g~TpL~~A~~~~~~~~~~~~li  321 (477)
T PHA02878        267 ILGLTALHSSIKSERKLKLLLEYGAD-------------INSLNSYKLTPLSSAVKQYLCINIGRILI  321 (477)
T ss_pred             CCCCCHHHHHccCHHHHHHHHHCCCC-------------CCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence            55666664    36789999999999             7889999999999999865 456666553

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.7e-39  Score=279.37  Aligned_cols=245  Identities=23%  Similarity=0.223  Sum_probs=226.5

Q ss_pred             CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHH-----HHHHHhHHHHHHHHHcCcHH---
Q psy8012           5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHS-----ALELEERKAINDLLRLNLDF---   76 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~-----A~~~~~~~~~~~L~~~g~~~---   76 (271)
                      .+...+..+.||||.|++.|+.+++++|+++|++++..+..+.||    +|+     |+..++.+++++|+++|+++   
T Consensus        27 ~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~----L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~  102 (480)
T PHA03100         27 LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTP----LHYLSNIKYNLTDVKEIVKLLLEYGANVNAP  102 (480)
T ss_pred             cchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCH----HHHHHHHHHHhhchHHHHHHHHHCCCCCCCC
Confidence            344557789999999999999999999999999999999999999    999     99999999999999998764   


Q ss_pred             -------HHHHH--hcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccCCCCCcHHHH
Q psy8012          77 -------LKNVR--SNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTALHM  144 (271)
Q Consensus        77 -------l~~a~--~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  144 (271)
                             ||+|+  ..++.+ +++|++.|++++..+..|.||||+|+..+  +.+++++|++.|++++..+..|.||||+
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~  182 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI  182 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence                   99999  999999 99999999999999999999999999999  9999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHhCCCCccccCCCCC------CCHHHHH-hcCC--chHHHHHHhchhhHHHHhhcCCcccc-----
Q psy8012         145 ACRFHDDDSIVRKLLRHGAYYNVVDGKTG------KTPLLHA-GKGA--REVNTVLLYFIHEIFKLMANNDTTIL-----  210 (271)
Q Consensus       145 a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g------~tpL~~A-~~~~--~~~~~~L~~~g~~~~~~~~~~~~~~~-----  210 (271)
                      |+.. ++.+++++|+++|++++..+. .|      .||||.| ..++  .+++++|+++|++++..+..+.++.+     
T Consensus       183 A~~~-~~~~iv~~Ll~~ga~~~~~~~-~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~  260 (480)
T PHA03100        183 AVEK-GNIDVIKFLLDNGADINAGDI-ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN  260 (480)
T ss_pred             HHHh-CCHHHHHHHHHcCCCccCCCC-CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            9998 999999999999999999988 78      8999999 8898  99999999999999877755554433     


Q ss_pred             cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      ...+++++|+..|++             ++.+|..|.||+++|++.++.+++++|-+.
T Consensus       261 ~~~~iv~~Ll~~gad-------------~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~  305 (480)
T PHA03100        261 NNPEFVKYLLDLGAN-------------PNLVNKYGDTPLHIAILNNNKEIFKLLLNN  305 (480)
T ss_pred             CCHHHHHHHHHcCCC-------------CCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence            358899999999997             778999999999999999999999998763

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=280.74  Aligned_cols=246  Identities=25%  Similarity=0.215  Sum_probs=210.2

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-------
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL-------   74 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~-------   74 (271)
                      |.+.+ ..|..|.||||+|++.|+.+++++|+++|++++..+..|.||    +|+|+..++.++++.|++.+.       
T Consensus       168 Gadvn-~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~----L~~A~~~~~~~ivk~Ll~~~~~~~~~~~  242 (682)
T PHA02876        168 GADVN-AKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV----LECAVDSKNIDTIKAIIDNRSNINKNDL  242 (682)
T ss_pred             CCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCH----HHHHHHcCCHHHHHHHHhcCCCCCCCcH
Confidence            44444 347789999999999999999999999999999999999999    999999999999988876432       


Q ss_pred             --------------------------------HHHHHHHhcChH-H-HHHHHhcCCCCccCCCCCCcHHHHHHHhC-CHH
Q psy8012          75 --------------------------------DFLKNVRSNKYD-E-VKKNIEDGACINVSSERCGSALIYAAWKG-YEE  119 (271)
Q Consensus        75 --------------------------------~~l~~a~~~~~~-~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~  119 (271)
                                                      ++||+|+..+.. . +++|++.|++++.++..|.||||+|+..| ..+
T Consensus       243 ~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~  322 (682)
T PHA02876        243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTE  322 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHH
Confidence                                            348888888775 4 88888889999888888999999999888 588


Q ss_pred             HHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         120 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       120 ~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      .++.|++.|++++..+..|.||||+|+..++..+++++|++.|++++.++. .|.||||+| ..++.+++++|+++|+++
T Consensus       323 ~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~-~G~TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        323 NIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDY-CDKTPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             HHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            889999999999988889999999998864678889999999999999998 899999999 999999999999999998


Q ss_pred             HHHhhcCCcccccc-------hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC-CCcHHHHHHH
Q psy8012         199 FKLMANNDTTILDR-------LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG-FPLLEELEKK  267 (271)
Q Consensus       199 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~-~~~~~~ll~~  267 (271)
                      +.....+. ++++.       ...++.|+..|++             ++.+|..|.||||+|++.| +.+++++|-+
T Consensus       402 ~~~~~~g~-T~Lh~A~~~~~~~~~vk~Ll~~gad-------------in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        402 EALSQKIG-TALHFALCGTNPYMSVKTLIDRGAN-------------VNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             cccCCCCC-chHHHHHHcCCHHHHHHHHHhCCCC-------------CCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            87665555 44433       4567889999988             7889999999999999987 5789999876

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=265.73  Aligned_cols=232  Identities=17%  Similarity=0.132  Sum_probs=181.4

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH--hHHHHHHHHHcCcHH----------
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE--ERKAINDLLRLNLDF----------   76 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~--~~~~~~~L~~~g~~~----------   76 (271)
                      .|.+|.||||+|++.|+.+++++|+++|++++.+|..|.||    ||+|+..+  ..+++++|+++|+++          
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~Tp----Lh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~t  143 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTP----LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCG  143 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH----HHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCc
Confidence            46789999999999999999999999999999999999999    99988755  478899999988754          


Q ss_pred             -HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC-CC
Q psy8012          77 -LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTALHMACRFH-DD  151 (271)
Q Consensus        77 -l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~  151 (271)
                       |+ |+..+..+ +++|++.|++++..|..|.||||+|+..+  +.+++++|++.|++++..|..|+||||+|+..+ ++
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence             65 55667777 99999999999999999999999988755  468899999999999999999999999999861 37


Q ss_pred             HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCC-chHHHHHHhchhhHHH--------------------HhhcCCccc
Q psy8012         152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGA-REVNTVLLYFIHEIFK--------------------LMANNDTTI  209 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~-~~~~~~L~~~g~~~~~--------------------~~~~~~~~~  209 (271)
                      .+++++|++ |+++|.++. .|.||||+| ..++ .+++++|+.+|++...                    .....+.++
T Consensus       223 ~~iv~lLl~-gadin~~d~-~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~Tp  300 (446)
T PHA02946        223 VDIINLLLP-STDVNKQNK-FGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTD  300 (446)
T ss_pred             HHHHHHHHc-CCCCCCCCC-CCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCH
Confidence            888888885 899999998 899999999 7666 5888999988764311                    011112244


Q ss_pred             c------cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         210 L------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       210 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      +      ...+++++|+.+|                    ..|+||||+|+..|+.+++++|-.
T Consensus       301 Lh~Aa~~g~~eivk~Ll~~~--------------------~~~~t~L~~A~~~~~~~~v~~Ll~  344 (446)
T PHA02946        301 FKMAVEVGSIRCVKYLLDND--------------------IICEDAMYYAVLSEYETMVDYLLF  344 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCC--------------------CccccHHHHHHHhCHHHHHHHHHH
Confidence            4      2356666666543                    235677777777777777776643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-37  Score=266.98  Aligned_cols=247  Identities=20%  Similarity=0.150  Sum_probs=219.9

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhC---CHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH-hHHHHHHHHHcCcHH-
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIG---DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE-ERKAINDLLRLNLDF-   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~-~~~~~~~L~~~g~~~-   76 (271)
                      |.+.+ +.+..|.||||+|+..+   +.+++++|++.|++++.++..|.||    ||+|+..+ ..+++++|+++|+++ 
T Consensus        37 ga~vn-~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~Tp----Lh~A~~~~~~~~iv~lLl~~ga~in  111 (471)
T PHA03095         37 GADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTP----LHLYLYNATTLDVIKLLIKAGADVN  111 (471)
T ss_pred             CCCcc-cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCcHHHHHHHHHcCCCCC
Confidence            44444 55778999999999999   9999999999999999999999999    99999999 699999999998765 


Q ss_pred             ---------HHHHH--hcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccCCCCCcHH
Q psy8012          77 ---------LKNVR--SNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTAL  142 (271)
Q Consensus        77 ---------l~~a~--~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l  142 (271)
                               ||+|+  ..++.+ +++|++.|++++..+..|.||||+|+..+  +.+++++|++.|++++..+..|+|||
T Consensus       112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~L  191 (471)
T PHA03095        112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL  191 (471)
T ss_pred             CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence                     99999  445677 99999999999999999999999998876  68999999999999998899999999


Q ss_pred             HHHHHh-CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCc--hHHHHHHhchhhHHHHhhcCCccccc------c
Q psy8012         143 HMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR--EVNTVLLYFIHEIFKLMANNDTTILD------R  212 (271)
Q Consensus       143 ~~a~~~-~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~--~~~~~L~~~g~~~~~~~~~~~~~~~~------~  212 (271)
                      |+++.. .+..+++++|++.|++++.++. .|.||||+| ..++.  .+++.|++.|++++..+.. +.+++|      .
T Consensus       192 h~~~~~~~~~~~i~~~Ll~~g~~~~~~d~-~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~-g~TpLh~A~~~~~  269 (471)
T PHA03095        192 HHHLQSFKPRARIVRELIRAGCDPAATDM-LGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRY-GQTPLHYAAVFNN  269 (471)
T ss_pred             HHHHHHCCCcHHHHHHHHHcCCCCcccCC-CCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCC
Confidence            999864 3678899999999999999999 999999999 76654  6889999999999877744 445553      5


Q ss_pred             hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         213 LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      .+.+++|+..|++             ++.+|..|.||||+|+++|+.+++++|-+.
T Consensus       270 ~~~v~~LL~~gad-------------~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~  312 (471)
T PHA03095        270 PRACRRLIALGAD-------------INAVSSDGNTPLSLMVRNNNGRAVRAALAK  312 (471)
T ss_pred             HHHHHHHHHcCCC-------------CcccCCCCCCHHHHHHHhCCHHHHHHHHHh
Confidence            7889999999999             788999999999999999999999988653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.5e-37  Score=270.35  Aligned_cols=247  Identities=17%  Similarity=0.101  Sum_probs=196.3

Q ss_pred             CCCCCCCCCCCCChHHHHHHh--CCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHh--HHHHHHHHHcCcHH--
Q psy8012           3 DPYDPYVPYEDHKPIAIAIQI--GDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEE--RKAINDLLRLNLDF--   76 (271)
Q Consensus         3 ~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~--~~~~~~L~~~g~~~--   76 (271)
                      .+++...+..|.||||.|+..  ++.+++++|+++|++++.++..|.||    ||+|+..|+  .++++.|+++|+++  
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TP----LH~Aa~~g~~~~eIVklLLe~GADVN~  242 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITP----LHTYLITGNVCASVIKKIIELGGDMDM  242 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCCCHHHHHHHHHcCCCCCC
Confidence            344444467788888887643  56788888888888888888888888    888888874  47888888887765  


Q ss_pred             --------HHH-------------------------------------HHhcChHH-HHHHHhcCCCCccCCCCCCcHHH
Q psy8012          77 --------LKN-------------------------------------VRSNKYDE-VKKNIEDGACINVSSERCGSALI  110 (271)
Q Consensus        77 --------l~~-------------------------------------a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~  110 (271)
                              ||.                                     |+..++.+ +++|++.|++++.+|..|.||||
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH  322 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLH  322 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHH
Confidence                    554                                     34556778 99999999999999999999999


Q ss_pred             HHHH--hCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh-------------CCCHHHHHHHHhCCCCccccCCCCCCC
Q psy8012         111 YAAW--KGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-------------HDDDSIVRKLLRHGAYYNVVDGKTGKT  175 (271)
Q Consensus       111 ~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-------------~~~~~~~~~Ll~~g~~~~~~~~~~g~t  175 (271)
                      +|+.  .++.+++++|++.|++++..|..|+||||+|+..             .++.+++++|+++|++++.++. .|+|
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~-~G~T  401 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNC-LGYT  401 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCC-CCCC
Confidence            9865  4578999999999999999999999999998741             2578999999999999999998 9999


Q ss_pred             HHHH----H-hcCCchHHHHHHhchhhHHHH-------------------------------------------------
Q psy8012         176 PLLH----A-GKGAREVNTVLLYFIHEIFKL-------------------------------------------------  201 (271)
Q Consensus       176 pL~~----A-~~~~~~~~~~L~~~g~~~~~~-------------------------------------------------  201 (271)
                      |||.    | ..++.+++++|++.|+.....                                                 
T Consensus       402 PLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~  481 (764)
T PHA02716        402 PLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYH  481 (764)
T ss_pred             hHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhH
Confidence            9993    2 356789999999876421100                                                 


Q ss_pred             -----------hhcCCcccccc-----------hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCC
Q psy8012         202 -----------MANNDTTILDR-----------LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFP  259 (271)
Q Consensus       202 -----------~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~  259 (271)
                                 .+..+.+++|.           .+.+++|+..|++             ++.+|..|.||||+|+++|+.
T Consensus       482 ~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD-------------IN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        482 CAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN-------------INIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             HHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC-------------CcccCCCCCCHHHHHHHcCCc
Confidence                       01223445542           2456899999999             889999999999999999987


Q ss_pred             -----cHHHHHHH
Q psy8012         260 -----LLEELEKK  267 (271)
Q Consensus       260 -----~~~~ll~~  267 (271)
                           +++++|-+
T Consensus       549 ~~~~~eIvk~LL~  561 (764)
T PHA02716        549 SGHQWYIVKNILD  561 (764)
T ss_pred             cccHHHHHHHHHh
Confidence                 88888765

>KOG4412|consensus

Probab=100.00  E-value=7.8e-38  Score=223.20  Aligned_cols=165  Identities=30%  Similarity=0.352  Sum_probs=148.9

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHH-HCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQ-NHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK   84 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~   84 (271)
                      +...|++|+||||+||+.|+.+++.+|+ +.+..+|.+|..|+||    ||.                       |++.+
T Consensus        31 ~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtP----lhi-----------------------a~s~g   83 (226)
T KOG4412|consen   31 NARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTP----LHI-----------------------AASNG   83 (226)
T ss_pred             hccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCch----hhh-----------------------hhhcC
Confidence            3455779999999999999999999999 5578899999999999    555                       45555


Q ss_pred             hHH-HHHHHhc-CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012          85 YDE-VKKNIED-GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG  162 (271)
Q Consensus        85 ~~~-~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g  162 (271)
                      ..+ ++.|+.. |+++|..+..|.|+||||+..|..+++++|++.|+.++..|..|.||||.|+.. |..+++++|+..|
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav-Gklkvie~Li~~~  162 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV-GKLKVIEYLISQG  162 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhc-cchhhHHHHHhcC
Confidence            555 5556655 889999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             CCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         163 AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       163 ~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      +.+|.+|+ .|+||||.| ..++.++...|+++|+++.
T Consensus       163 a~~n~qDk-~G~TpL~~al~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  163 APLNTQDK-YGFTPLHHALAEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             CCCCcccc-cCccHHHHHHhccCchHHHHHHHhcccee
Confidence            99999999 999999999 9999999999999999854

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.5e-36  Score=242.34  Aligned_cols=206  Identities=18%  Similarity=0.134  Sum_probs=186.6

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L   77 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l   77 (271)
                      ..|.+|.||||+|++.|+.++++.|++.|++++..+  |.||    ||+|+..++.+++++|+++|+++          |
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~Tp----Lh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpL   98 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFP----LHQAATLEDTKIVKILLFSGMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCH----HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            458889999999999999999999999999988764  7899    99999999999999999988664          9


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCC-CcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERC-GSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~  154 (271)
                      |+|+..++.+ +++|++.|++++.++..| .||||+|+..|+.+++++|++.+.+.  .+ ..|.||||+|+.. |+.++
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~-g~~ei  175 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKN-GHVDM  175 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHc-CCHHH
Confidence            9999999999 999999999999988887 48999999999999999999987543  22 2589999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCH-HHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTP-LLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK  225 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tp-L~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  225 (271)
                      +++|+++|++++.++. .|.|| ||+| ..++.+++++|+++|++++..+.  +.+.++..+++++|+.+-++
T Consensus       176 v~lLL~~gAd~n~~d~-~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~--~~~~l~~~e~~~~ll~~~~~  245 (284)
T PHA02791        176 MILLLDYMTSTNTNNS-LLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL--ENVLLDDAEIAKMIIEKHVE  245 (284)
T ss_pred             HHHHHHCCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc--cCccCCCHHHHHHHHHhhhh
Confidence            9999999999999998 88877 9999 99999999999999999976655  55788999999999988766

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-36  Score=257.20  Aligned_cols=228  Identities=24%  Similarity=0.260  Sum_probs=207.4

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHh
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRS   82 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~   82 (271)
                      ++++||.|++.|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|+++|+++          ||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tp----L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISP----IKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHH
Confidence            5789999999999999999999999999999999999    99999999999999999998754          999999


Q ss_pred             cChHH-HHHHHhcCCCCc-cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          83 NKYDE-VKKNIEDGACIN-VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        83 ~~~~~-~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                      .++.+ ++.|++.|...+ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~-~~~~~v~~Ll~  156 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMM-GDIKGIELLID  156 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHh
Confidence            99999 999999998764 4567899999999999999999999999999999999999999999998 99999999999


Q ss_pred             CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccccc------chHHHHHHHhhccCCCCCCCCC
Q psy8012         161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILD------RLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +|++++.++. .|.||||+| ..|+.+++++|+++|++++.....+..++++      ..+++++|+.+|++...     
T Consensus       157 ~g~~~~~~d~-~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~-----  230 (413)
T PHA02875        157 HKACLDIEDC-CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI-----  230 (413)
T ss_pred             cCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch-----
Confidence            9999999998 999999999 9999999999999999999887777766664      58999999999998432     


Q ss_pred             CcccccccccCCCchHHHHHHHh
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKR  256 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~  256 (271)
                           ....+..+.||++++...
T Consensus       231 -----~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        231 -----MFMIEGEECTILDMICNM  248 (413)
T ss_pred             -----HhhcCCCchHHHHHHHhh
Confidence                 234578899999988644

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.1e-35  Score=251.91  Aligned_cols=243  Identities=13%  Similarity=0.064  Sum_probs=199.9

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhC--CHHHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIG--DPQIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--   76 (271)
                      |.+++ ..|.+|.||||+|+..+  ..+++++|+++|++++. .+..|.||    || |+..++.++++.|++.|+++  
T Consensus        95 GAdin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp----L~-aa~~~~~~vv~~Ll~~gad~~~  168 (446)
T PHA02946         95 GADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP----LL-ACTDPSERVFKKIMSIGFEARI  168 (446)
T ss_pred             cCCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH----HH-HHHCCChHHHHHHHhccccccc
Confidence            55555 45889999999999876  47999999999999995 68899999    97 66678999999999988755  


Q ss_pred             --------HHHHHhcCh--HH-HHHHHhcCCCCccCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccCCCCCcHHH
Q psy8012          77 --------LKNVRSNKY--DE-VKKNIEDGACINVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTALH  143 (271)
Q Consensus        77 --------l~~a~~~~~--~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~t~l~  143 (271)
                              ||+|+..+.  .+ +++|++.|++++.+|..|.||||+|+..+  +.++++.|++ |++++..|..|.||||
T Consensus       169 ~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh  247 (446)
T PHA02946        169 VDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLT  247 (446)
T ss_pred             cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence                    888776544  56 99999999999999999999999999986  7899999985 8999999999999999


Q ss_pred             HHHHhCCC-HHHHHHHHhCCCCcc--------------------ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012         144 MACRFHDD-DSIVRKLLRHGAYYN--------------------VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       144 ~a~~~~~~-~~~~~~Ll~~g~~~~--------------------~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~  201 (271)
                      +|+.. ++ .+++++|+++|++++                    ......|.||||+| ..|+.+++++|+++|++..  
T Consensus       248 ~A~~~-~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~--  324 (446)
T PHA02946        248 LLIKT-LSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICE--  324 (446)
T ss_pred             HHHHh-CChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccc--
Confidence            99998 66 589999999987542                    22222578999999 9999999999999986421  


Q ss_pred             hhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         202 MANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      .....+......++++.|+.+|++             ++.+ ..|.||+|+|++.++.++++.|-+.
T Consensus       325 t~L~~A~~~~~~~~v~~Ll~~ga~-------------~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYLLFNHFS-------------VDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             cHHHHHHHhCHHHHHHHHHHCCCC-------------CCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            111111122457889999999999             6665 5899999999999999999988764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-34  Score=231.30  Aligned_cols=216  Identities=17%  Similarity=0.095  Sum_probs=188.1

Q ss_pred             hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--------HHHHHhcChHH-HHHHHh
Q psy8012          23 IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--------LKNVRSNKYDE-VKKNIE   93 (271)
Q Consensus        23 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--------l~~a~~~~~~~-~~~ll~   93 (271)
                      .++.+++++|+++|++  .+|..|.||    ||+|+..|+.++++.|+++|+++        ||+|+..++.+ +++|+.
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~Tp----Lh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSA----LYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcH----HHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            4678999999999884  578899999    99999999999999999998653        99999999999 999999


Q ss_pred             cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCC-cHHHHHHHhCCCHHHHHHHHhCCCCccccCCCC
Q psy8012          94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF-TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT  172 (271)
Q Consensus        94 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~  172 (271)
                      .|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+ ||||+|+.. ++.+++++|++++++..  +...
T Consensus        83 ~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~-g~~eivk~LL~~~~~~~--d~~~  159 (284)
T PHA02791         83 SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTF--DLAI  159 (284)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHc-CCHHHHHHHHhcCCccc--cccc
Confidence            9999999999999999999999999999999999999998888775 899999998 99999999999876542  3215


Q ss_pred             CCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc------cchHHHHHHHhhccCCCCCCCCCCcccccccccCC
Q psy8012         173 GKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDA  245 (271)
Q Consensus       173 g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~  245 (271)
                      |.||||+| ..|+.+++++|+++|++++..+..+..+++      ...+++++|+..|++             ++.+|..
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~-------------in~~~~~  226 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN-------------IYSVNLE  226 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC-------------CccCccc
Confidence            89999999 999999999999999998876665555534      458888999999988             6778885


Q ss_pred             CchHHHHHHHhCCCcHHHHHHH
Q psy8012         246 GETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       246 g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      | |||      ++.|++++|-+
T Consensus       227 ~-~~l------~~~e~~~~ll~  241 (284)
T PHA02791        227 N-VLL------DDAEIAKMIIE  241 (284)
T ss_pred             C-ccC------CCHHHHHHHHH
Confidence            5 555      77788887765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-34  Score=245.16  Aligned_cols=215  Identities=27%  Similarity=0.322  Sum_probs=151.3

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCC-----------------------CCchhhcccchHHHHHHHHH
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ-----------------------IDKEIYSKNKAAARIAHSAL   58 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~-----------------------~~~~~~~g~t~~~~~l~~A~   58 (271)
                      |.+.+ ..+..|.||||.|++.|+.+++++|+++|++                       ++.++..|.||    ||+|+
T Consensus        58 Ga~~n-~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~----Lh~A~  132 (434)
T PHA02874         58 GADIN-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTF----LHYAI  132 (434)
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccH----HHHHH
Confidence            44443 3466799999999999999999999987754                       44556667777    77777


Q ss_pred             HHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHC
Q psy8012          59 ELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN  127 (271)
Q Consensus        59 ~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  127 (271)
                      ..|+.+++++|+++|+++          ||+|+..+..+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.
T Consensus       133 ~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  212 (434)
T PHA02874        133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH  212 (434)
T ss_pred             HCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            777777777777766543          77777777777 7777777777777777777777777777777777777777


Q ss_pred             CCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC-CchHHHHHHhchhhHHHHhhcC
Q psy8012         128 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG-AREVNTVLLYFIHEIFKLMANN  205 (271)
Q Consensus       128 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~-~~~~~~~L~~~g~~~~~~~~~~  205 (271)
                      |++++..+..|.||||.|+.. +. +.+.+|+ .|++++.++. .|+||||+| ..+ +.+++++|+++|+++       
T Consensus       213 g~~i~~~~~~g~TpL~~A~~~-~~-~~i~~Ll-~~~~in~~d~-~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-------  281 (434)
T PHA02874        213 GNHIMNKCKNGFTPLHNAIIH-NR-SAIELLI-NNASINDQDI-DGSTPLHHAINPPCDIDIIDILLYHKADI-------  281 (434)
T ss_pred             CCCCcCCCCCCCCHHHHHHHC-Ch-HHHHHHH-cCCCCCCcCC-CCCCHHHHHHhcCCcHHHHHHHHHCcCCC-------
Confidence            777776666777777777764 43 3455554 4667777766 677777777 443 567777777776664       


Q ss_pred             CcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC-CCcHHHHHH
Q psy8012         206 DTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG-FPLLEELEK  266 (271)
Q Consensus       206 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~-~~~~~~ll~  266 (271)
                                                        +.+|..|+||||+|++.+ ..++++.+.
T Consensus       282 ----------------------------------n~~d~~g~TpL~~A~~~~~~~~~ik~ll  309 (434)
T PHA02874        282 ----------------------------------SIKDNKGENPIDTAFKYINKDPVIKDII  309 (434)
T ss_pred             ----------------------------------CCCCCCCCCHHHHHHHhCCccHHHHHHH
Confidence                                              467888888888888776 444555443

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=246.71  Aligned_cols=245  Identities=18%  Similarity=0.187  Sum_probs=201.5

Q ss_pred             CCCCCCCCCCCCCChHHHHHHh--CCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHH------HhHHHHHHHHHcC
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQI--GDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL------EERKAINDLLRLN   73 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~------~~~~~~~~L~~~g   73 (271)
                      |.+++..  .+|.||||.++..  ++.+++++|+++|+++|.++ .+.||    ||.|+..      +..+++++|+++|
T Consensus        26 GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tp----L~~a~~~~~~~~~~~~~iv~~Ll~~G   98 (494)
T PHA02989         26 GFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETP----LCAVLRNREITSNKIKKIVKLLLKFG   98 (494)
T ss_pred             CCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCc----HHHHHhccCcchhhHHHHHHHHHHCC
Confidence            5665554  5689998876654  36899999999999999876 57899    9988763      4678999999998


Q ss_pred             cHH----------HHHHHhc---ChHH-HHHHHhcCCCC-ccCCCCCCcHHHHHHHh--CCHHHHHHHHHCCCCccc-cC
Q psy8012          74 LDF----------LKNVRSN---KYDE-VKKNIEDGACI-NVSSERCGSALIYAAWK--GYEEIVDLLLDNGADVNF-KS  135 (271)
Q Consensus        74 ~~~----------l~~a~~~---~~~~-~~~ll~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~-~~  135 (271)
                      +++          |+.|+..   +..+ +++|+++|+++ +..+..|.||||+|+..  ++.+++++|++.|++++. .+
T Consensus        99 adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~  178 (494)
T PHA02989         99 ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS  178 (494)
T ss_pred             CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccc
Confidence            776          7766543   5677 99999999999 78999999999998764  588999999999999988 57


Q ss_pred             CCCCcHHHHHHHh---CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hc------CCchHHHHHHhchhhHHHHhhcC
Q psy8012         136 ATGFTALHMACRF---HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK------GAREVNTVLLYFIHEIFKLMANN  205 (271)
Q Consensus       136 ~~~~t~l~~a~~~---~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~------~~~~~~~~L~~~g~~~~~~~~~~  205 (271)
                      ..|.||||+|+..   .++.+++++|+++|++++..+. .+.||||.+ ..      +..+++++|+. |++++..+..+
T Consensus       179 ~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~-~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G  256 (494)
T PHA02989        179 LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN-GSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKG  256 (494)
T ss_pred             ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC-ccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCC
Confidence            8899999998865   1488999999999999999998 899999876 32      34677777665 58888776655


Q ss_pred             Ccccc-----cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         206 DTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       206 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      .++.+     ...+.+++|+..|++             ++.+|..|+||||+|++.|+.+++++|-+.
T Consensus       257 ~TpL~~Aa~~~~~~~v~~LL~~Gad-------------in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        257 FNPLLISAKVDNYEAFNYLLKLGDD-------------IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             CCHHHHHHHhcCHHHHHHHHHcCCC-------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            54433     357889999999999             788999999999999999999999887653

>KOG0510|consensus

Probab=100.00  E-value=3.2e-34  Score=245.61  Aligned_cols=246  Identities=22%  Similarity=0.218  Sum_probs=215.1

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH---------
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF---------   76 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~---------   76 (271)
                      .+.++..+.+|+|+|+..|+.++++.|++.|+|++..+..|.||    ||+|+..++.|..+.|++.|+++         
T Consensus       114 ~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~Tp----Lh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~  189 (929)
T KOG0510|consen  114 TPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTP----LHLAARKNKVEAKKELINKGADPCKSDIDGNF  189 (929)
T ss_pred             CChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCch----hhHHHhcChHHHHHHHHhcCCCCCcccCcCCc
Confidence            46678889999999999999999999999999999999999999    99999999999889999998877         


Q ss_pred             -HHHHHhcChHH-HHHHHh-----cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCc---------------ccc
Q psy8012          77 -LKNVRSNKYDE-VKKNIE-----DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV---------------NFK  134 (271)
Q Consensus        77 -l~~a~~~~~~~-~~~ll~-----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------------~~~  134 (271)
                       +|.|+..+..+ .+..+.     .+..+|..+..+.||||.|+..|+++.++.+++.|...               +..
T Consensus       190 ~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~  269 (929)
T KOG0510|consen  190 PIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDE  269 (929)
T ss_pred             hHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcc
Confidence             89999999999 999997     67788999999999999999999999999999887432               234


Q ss_pred             CCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCccccc-
Q psy8012         135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTILD-  211 (271)
Q Consensus       135 ~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~~-  211 (271)
                      |.+|.||||+|++. |+.+.++.|+..|++++.++. ++.||||.| .+|++.+++-|++ .|.......+..+.+++| 
T Consensus       270 d~dg~tpLH~a~r~-G~~~svd~Ll~~Ga~I~~kn~-d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHl  347 (929)
T KOG0510|consen  270 DNDGCTPLHYAARQ-GGPESVDNLLGFGASINSKNK-DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHL  347 (929)
T ss_pred             cccCCchHHHHHHc-CChhHHHHHHHcCCcccccCC-CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhh
Confidence            77899999999998 999999999999999999998 999999999 9999999999999 444433344445556664 


Q ss_pred             -----chHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         212 -----RLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       212 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                           +.++++.|+.+|+......          ..|++|.||||+|++.|+..+++.|-+
T Consensus       348 aa~~gH~~v~qlLl~~GA~~~~~~----------e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  348 AAKSGHDRVVQLLLNKGALFLNMS----------EADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             hhhcCHHHHHHHHHhcChhhhccc----------ccccCCchhhhHHHHhccHHHHHHHHH
Confidence                 4888999999999853311          349999999999999999999998875

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=245.10  Aligned_cols=232  Identities=21%  Similarity=0.161  Sum_probs=207.0

Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH---hHHHHHHHHHcCcHH----------HHHHHhcC
Q psy8012          18 AIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE---ERKAINDLLRLNLDF----------LKNVRSNK   84 (271)
Q Consensus        18 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~---~~~~~~~L~~~g~~~----------l~~a~~~~   84 (271)
                      ..++..++++++++|+++|++++.++..|.||    ||+|+..+   +.++++.|++.|+++          ||+|+..+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~----Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTP----LHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCH----HHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            45677899999999999999999999999999    99999998   999999999998766          99999999


Q ss_pred             -hHH-HHHHHhcCCCCccCCCCCCcHHHHHH--HhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC-CCHHHHHHHH
Q psy8012          85 -YDE-VKKNIEDGACINVSSERCGSALIYAA--WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH-DDDSIVRKLL  159 (271)
Q Consensus        85 -~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~~Ll  159 (271)
                       ..+ +++|++.|++++.++..|.||||+|+  ..++.+++++|++.|++++..+..|.||||+|+... ...+++++|+
T Consensus        95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence             588 99999999999999999999999999  556899999999999999999999999999998862 3689999999


Q ss_pred             hCCCCccccCCCCCCCHHHHH-h--cCCchHHHHHHhchhhHHHHhhcCCcccccc--------hHHHHHHHhhccCCCC
Q psy8012         160 RHGAYYNVVDGKTGKTPLLHA-G--KGAREVNTVLLYFIHEIFKLMANNDTTILDR--------LDEMKSLILEGTKEFG  228 (271)
Q Consensus       160 ~~g~~~~~~~~~~g~tpL~~A-~--~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~  228 (271)
                      ++|++++..+. .|.||||++ .  .+..+++++|+++|++++..+..+. +++|.        ...++.|+..|++   
T Consensus       175 ~~g~~~~~~d~-~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~-tpLh~Aa~~~~~~~~~v~~ll~~g~d---  249 (471)
T PHA03095        175 DAGADVYAVDD-RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGN-TPLHSMATGSSCKRSLVLPLLIAGIS---  249 (471)
T ss_pred             HcCCCCcccCC-CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCC-CHHHHHHhcCCchHHHHHHHHHcCCC---
Confidence            99999999987 899999988 4  4788999999999999987665554 45543        2467788889988   


Q ss_pred             CCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         229 PGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       229 ~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                ++.+|..|.||||+|+..|+.+++++|-+.
T Consensus       250 ----------in~~d~~g~TpLh~A~~~~~~~~v~~LL~~  279 (471)
T PHA03095        250 ----------INARNRYGQTPLHYAAVFNNPRACRRLIAL  279 (471)
T ss_pred             ----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                      788999999999999999999999998763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.7e-33  Score=247.83  Aligned_cols=242  Identities=17%  Similarity=0.099  Sum_probs=197.0

Q ss_pred             HhCCHHHHHHHHHCC-CCCCch-hhcccchHHHHHHHHHHH--HhHHHHHHHHHcCcHH----------HHHHHhcCh--
Q psy8012          22 QIGDPQIVKELQNHG-AQIDKE-IYSKNKAAARIAHSALEL--EERKAINDLLRLNLDF----------LKNVRSNKY--   85 (271)
Q Consensus        22 ~~g~~~~~~~Ll~~g-~~~~~~-~~~g~t~~~~~l~~A~~~--~~~~~~~~L~~~g~~~----------l~~a~~~~~--   85 (271)
                      +.++.+++++|+++| ++++.+ +..|.||    ||+|+..  ++.+++++|+++|+++          ||+|+..++  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~Tp----LH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGI----LHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcH----HHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            458889999999999 999998 8899999    9988653  5789999999998766          999999985  


Q ss_pred             HH-HHHHHhcCCCCccCCCCCCcHHHHH-------------------------------------HHhCCHHHHHHHHHC
Q psy8012          86 DE-VKKNIEDGACINVSSERCGSALIYA-------------------------------------AWKGYEEIVDLLLDN  127 (271)
Q Consensus        86 ~~-~~~ll~~~~~~~~~~~~g~t~l~~a-------------------------------------~~~~~~~~~~~Ll~~  127 (271)
                      .+ +++|++.|++++.++..|.||||+|                                     +..|+.+++++|++.
T Consensus       227 ~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            47 9999999999999999999999975                                     345778999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHh-CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-h--------------cCCchHHHHH
Q psy8012         128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G--------------KGAREVNTVL  191 (271)
Q Consensus       128 ~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~--------------~~~~~~~~~L  191 (271)
                      |++++..|..|+||||+|+.. .++.+++++|++.|++++.++. .|+||||+| .              .++.+++++|
T Consensus       307 GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~-~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL  385 (764)
T PHA02716        307 GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDN-IGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL  385 (764)
T ss_pred             CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCC-CCCCHHHHHHHhhhhhccccccccccChHHHHHHH
Confidence            999999999999999998753 2578999999999999999998 999999987 4              2678999999


Q ss_pred             HhchhhHHHHhhcCCcccc---------cchHHHHHHHhhccCCCCCCC-------------------------------
Q psy8012         192 LYFIHEIFKLMANNDTTIL---------DRLDEMKSLILEGTKEFGPGD-------------------------------  231 (271)
Q Consensus       192 ~~~g~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~-------------------------------  231 (271)
                      +++|++++..+..+.++..         ...+++++|+..++.......                               
T Consensus       386 L~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~  465 (764)
T PHA02716        386 ISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYT  465 (764)
T ss_pred             HHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhh
Confidence            9999999877665555543         236778888887643211100                               


Q ss_pred             --CC---------------CcccccccccCCCchHHHHHHHhCCCcHH-----HHHHHH
Q psy8012         232 --YN---------------NFSLLKVTKNDAGETILDIAKKRGFPLLE-----ELEKKL  268 (271)
Q Consensus       232 --~~---------------~~~~~~~~~d~~g~tpl~~A~~~~~~~~~-----~ll~~~  268 (271)
                        +.               -.....+.+|..|+||||+|+..|+.+++     ++|-+.
T Consensus       466 ~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~  524 (764)
T PHA02716        466 DEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI  524 (764)
T ss_pred             hhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC
Confidence              00               00112467799999999999999988655     777653

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-33  Score=241.90  Aligned_cols=245  Identities=10%  Similarity=-0.000  Sum_probs=196.3

Q ss_pred             CCCCCCCCCCChHHHHHHhC---CHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH--hHHHHHHHHHcCcHH---
Q psy8012           5 YDPYVPYEDHKPIAIAIQIG---DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE--ERKAINDLLRLNLDF---   76 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g---~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~--~~~~~~~L~~~g~~~---   76 (271)
                      .+...|.+|.||||+|+..|   +.+++++|+++|++++.+|..|.||    ||+|+..+  +.+++++|+++|++.   
T Consensus        33 in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TP----Lh~Aa~~~~~~~eIv~~Ll~~~~~~~~~  108 (672)
T PHA02730         33 LSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTP----LGVYSKRKYVKSQIVHLLISSYSNASNE  108 (672)
T ss_pred             hhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCCh----HHHHHHcCCCcHHHHHHHHhcCCCCCcc
Confidence            44567889999999999997   5999999999999999999999999    99999977  799999999996522   


Q ss_pred             ---------HHHHHh--cChHH-HHHHHh-cCCCCccCC-----CCCCcHHHHHHHhCCHHHHHHHHHCCCCcc------
Q psy8012          77 ---------LKNVRS--NKYDE-VKKNIE-DGACINVSS-----ERCGSALIYAAWKGYEEIVDLLLDNGADVN------  132 (271)
Q Consensus        77 ---------l~~a~~--~~~~~-~~~ll~-~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~------  132 (271)
                               ++.++.  .++.+ +++|+. .+.+++...     ..|.+|++++...++.++|++|+++|++++      
T Consensus       109 ~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~  188 (672)
T PHA02730        109 LTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRS  188 (672)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccc
Confidence                     666665  78888 999996 667876553     278899999999999999999999999985      


Q ss_pred             -ccC-CCCCcHHHHHHHh-----CCCHHHHHHHHhCCCCccccCCCCCCCHHHH--H-hcCCchHHHHHHh---------
Q psy8012         133 -FKS-ATGFTALHMACRF-----HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--A-GKGAREVNTVLLY---------  193 (271)
Q Consensus       133 -~~~-~~~~t~l~~a~~~-----~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~--A-~~~~~~~~~~L~~---------  193 (271)
                       ..+ ....|.||++...     .+..+++++|+++|+++|.++. .|+||||+  + ..++.|++++|++         
T Consensus       189 ~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~-~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~  267 (672)
T PHA02730        189 CMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE-GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYD  267 (672)
T ss_pred             ccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCcccHHHHHHHHhccccccccc
Confidence             122 3334556644322     3789999999999999999999 99999995  4 6677999999999         


Q ss_pred             -----------------------chhhHHH--------------------HhhcCCc-----c---------------c-
Q psy8012         194 -----------------------FIHEIFK--------------------LMANNDT-----T---------------I-  209 (271)
Q Consensus       194 -----------------------~g~~~~~--------------------~~~~~~~-----~---------------~-  209 (271)
                                             +|+|...                    .+..+..     +               . 
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l  347 (672)
T PHA02730        268 DISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAML  347 (672)
T ss_pred             cccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHH
Confidence                                   7777643                    1111111     0               0 


Q ss_pred             --------ccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCC----CcHHHHHHHH
Q psy8012         210 --------LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGF----PLLEELEKKL  268 (271)
Q Consensus       210 --------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~----~~~~~ll~~~  268 (271)
                              .-..++++.|+.+||+             ++.+ ..|.||||+|++.++    .+++++|-+.
T Consensus       348 ~~Y~~~~~~v~ieIvelLIs~GAd-------------IN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~  404 (672)
T PHA02730        348 INYLHYGDMVSIPILRCMLDNGAT-------------MDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVEN  404 (672)
T ss_pred             HHHHhcCCcCcHHHHHHHHHCCCC-------------CCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHc
Confidence                    1237788999999999             6664 789999999998885    7999999764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6e-33  Score=237.80  Aligned_cols=194  Identities=24%  Similarity=0.264  Sum_probs=179.6

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-------
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL-------   74 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~-------   74 (271)
                      |.+++ ..+.+|.||||+|+..|+.+++++|+++|++++..+..+.||    ||.|+..|+.++++.|++.|+       
T Consensus        25 g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~   99 (413)
T PHA02875         25 GINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE----LHDAVEEGDVKAVEELLDLGKFADDVFY   99 (413)
T ss_pred             CCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccH----HHHHHHCCCHHHHHHHHHcCCccccccc
Confidence            44443 335689999999999999999999999999999988899999    999999999999999999864       


Q ss_pred             ----HHHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q psy8012          75 ----DFLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH  149 (271)
Q Consensus        75 ----~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  149 (271)
                          ++||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. 
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~-  178 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAK-  178 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-
Confidence                3499999999999 9999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCC-CCHHHHH-hcCCchHHHHHHhchhhHHHHh
Q psy8012         150 DDDSIVRKLLRHGAYYNVVDGKTG-KTPLLHA-GKGAREVNTVLLYFIHEIFKLM  202 (271)
Q Consensus       150 ~~~~~~~~Ll~~g~~~~~~~~~~g-~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~  202 (271)
                      ++.+++++|++.|++++..+. .| .||+|+| ..++.+++++|+++|++++...
T Consensus       179 g~~eiv~~Ll~~ga~~n~~~~-~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~  232 (413)
T PHA02875        179 GDIAICKMLLDSGANIDYFGK-NGCVAALCYAIENNKIDIVRLFIKRGADCNIMF  232 (413)
T ss_pred             CCHHHHHHHHhCCCCCCcCCC-CCCchHHHHHHHcCCHHHHHHHHHCCcCcchHh
Confidence            999999999999999999998 55 5899999 9999999999999999987543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=242.89  Aligned_cols=218  Identities=24%  Similarity=0.223  Sum_probs=198.2

Q ss_pred             CCCCCCCCCCCCCChHHH-----HHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHH--HHHhHHHHHHHHHcCc
Q psy8012           2 GDPYDPYVPYEDHKPIAI-----AIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSAL--ELEERKAINDLLRLNL   74 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~-----A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~--~~~~~~~~~~L~~~g~   74 (271)
                      |.+++ ..+..|.||||+     |+..|+.+++++|++.|++++..+..|.||    ||+|+  ..++.+++++|+++|+
T Consensus        58 g~~~~-~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tp----L~~A~~~~~~~~~iv~~Ll~~g~  132 (480)
T PHA03100         58 GADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITP----LLYAISKKSNSYSIVEYLLDNGA  132 (480)
T ss_pred             CCCCC-CccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCch----hhHHHhcccChHHHHHHHHHcCC
Confidence            44433 335678999999     999999999999999999999999999999    99999  9999999999999987


Q ss_pred             HH----------HHHHHhcC--hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCC---
Q psy8012          75 DF----------LKNVRSNK--YDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG---  138 (271)
Q Consensus        75 ~~----------l~~a~~~~--~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~---  138 (271)
                      ++          ||+|+..+  +.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..+   
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  212 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLF  212 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcH
Confidence            65          99999999  888 999999999999999999999999999999999999999999999988888   


Q ss_pred             ---CcHHHHHHHhCCC--HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc--
Q psy8012         139 ---FTALHMACRFHDD--DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL--  210 (271)
Q Consensus       139 ---~t~l~~a~~~~~~--~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~--  210 (271)
                         .||+|.|+.. ++  .+++++|++.|++++.++. .|.||||+| ..++.+++++|+++|++++..+..+.++..  
T Consensus       213 ~~~~t~l~~a~~~-~~~~~~iv~~Ll~~g~din~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        213 TIFETPLHIAACY-NEITLEVVNYLLSYGVPINIKDV-YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             HHHHhHHHHHHHh-CcCcHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence               8999999998 98  9999999999999999998 999999999 999999999999999999877666655433  


Q ss_pred             ---cchHHHHHHHhhccCC
Q psy8012         211 ---DRLDEMKSLILEGTKE  226 (271)
Q Consensus       211 ---~~~~~~~~l~~~~~~~  226 (271)
                         ...+++++|+..|++.
T Consensus       291 ~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        291 ILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             HHhCCHHHHHHHHhcCCCH
Confidence               4588999999999873

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.8e-33  Score=249.81  Aligned_cols=234  Identities=21%  Similarity=0.137  Sum_probs=132.3

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhH-HHHHHHHHcCcHH----------HHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEER-KAINDLLRLNLDF----------LKNVR   81 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~-~~~~~L~~~g~~~----------l~~a~   81 (271)
                      +.++|+.|+..++.+++++|++.|++++..+..|.||    ||+|+..++. ++++.|++.|+++          ||+|+
T Consensus       240 ~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~Tp----Lh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa  315 (682)
T PHA02876        240 NDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP----LHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMA  315 (682)
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            3445555555555555555555555555555555555    5555555543 3555555554432          55555


Q ss_pred             hcC-hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHh-CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHH
Q psy8012          82 SNK-YDE-VKKNIEDGACINVSSERCGSALIYAAWK-GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL  158 (271)
Q Consensus        82 ~~~-~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~L  158 (271)
                      ..+ ..+ ++.|+..|++++..+..|.||||+|+.. ++.++++.|++.|++++..+..|.||||+|+.. ++.+++++|
T Consensus       316 ~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~-~~~~iv~~L  394 (682)
T PHA02876        316 KNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVR-NNVVIINTL  394 (682)
T ss_pred             HhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHc-CCHHHHHHH
Confidence            555 244 5555555555555555555666655553 245555555555555555555555666655555 555555655


Q ss_pred             HhCCCCccccCCCCCCCHHHHH-hcC-CchHHHHHHhchhhHHHHhhcCCcccc------cchHHHHHHHhhccCCCCCC
Q psy8012         159 LRHGAYYNVVDGKTGKTPLLHA-GKG-AREVNTVLLYFIHEIFKLMANNDTTIL------DRLDEMKSLILEGTKEFGPG  230 (271)
Q Consensus       159 l~~g~~~~~~~~~~g~tpL~~A-~~~-~~~~~~~L~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~  230 (271)
                      +++|++++..+. .|.||||+| ..+ ...++++|+++|++++..+..+.++.+      ...+++++|+..|++     
T Consensus       395 l~~gad~~~~~~-~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad-----  468 (682)
T PHA02876        395 LDYGADIEALSQ-KIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD-----  468 (682)
T ss_pred             HHCCCCccccCC-CCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC-----
Confidence            555555555555 555666555 322 234455555555555544443333222      124455555666655     


Q ss_pred             CCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         231 DYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       231 ~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                              ++.+|..|.||+++|+.++  +++++|.+
T Consensus       469 --------~n~~d~~g~tpl~~a~~~~--~~v~~Ll~  495 (682)
T PHA02876        469 --------VNAINIQNQYPLLIALEYH--GIVNILLH  495 (682)
T ss_pred             --------CCCCCCCCCCHHHHHHHhC--CHHHHHHH
Confidence                    5688999999999998764  45665543

>KOG4412|consensus

Probab=100.00  E-value=1.2e-33  Score=201.89  Aligned_cols=202  Identities=24%  Similarity=0.205  Sum_probs=171.0

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK   89 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~   89 (271)
                      .+.++.+.+|......-++.+++... .++.++. +|.||    ||+||..|+.+++.+|++                  
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~----LHwa~S~g~~eiv~fLls------------------   59 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTP----LHWACSFGHVEIVYFLLS------------------   59 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCce----eeeeeecCchhHHHHHHh------------------
Confidence            36788999999988888999998776 5666665 89999    666666666555555543                  


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012          90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~  168 (271)
                         ..+..+|..|..|+||||.|+..|+.++|+-|+.+ |+++|..+..|.|+||+|+.. +..+++++|++.|+.++.+
T Consensus        60 ---q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK-~r~eIaqlLle~ga~i~~k  135 (226)
T KOG4412|consen   60 ---QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK-GRLEIAQLLLEKGALIRIK  135 (226)
T ss_pred             ---cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC-ChhhHHHHHHhcCCCCccc
Confidence               34677888999999999999999999999999988 899999999999999999998 9999999999999999999


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccc-----hHHHHHHHhhccCCCCCCCCCCcccccccc
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDR-----LDEMKSLILEGTKEFGPGDYNNFSLLKVTK  242 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (271)
                      |. .|.||||-| ..|..+++++|++.|+.++..+..+.++.++.     .+....|+.+|++             .+..
T Consensus       136 D~-~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd-------------~~~e  201 (226)
T KOG4412|consen  136 DK-QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD-------------TDRE  201 (226)
T ss_pred             cc-ccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccc-------------eeec
Confidence            99 999999999 99999999999999999887777666665543     5666778888877             6678


Q ss_pred             cCCCchHHHHHH
Q psy8012         243 NDAGETILDIAK  254 (271)
Q Consensus       243 d~~g~tpl~~A~  254 (271)
                      |++| ||+-.|.
T Consensus       202 dke~-t~~~~a~  212 (226)
T KOG4412|consen  202 DKEG-TALRIAC  212 (226)
T ss_pred             cccC-chHHHHH
Confidence            8888 8876664

>KOG0509|consensus

Probab=100.00  E-value=3.3e-33  Score=234.53  Aligned_cols=197  Identities=27%  Similarity=0.274  Sum_probs=182.7

Q ss_pred             CChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----------HHHHH
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----------LKNVR   81 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----------l~~a~   81 (271)
                      ..-++.|+++|.++.++.+++. |.+++..|.+|.|+    ||+|+.+++.+++++|+++|+++           ||+|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tl----LHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAa  120 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTL----LHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAA  120 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccc----eeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHH
Confidence            4568899999999999999998 99999999999999    99999999999999999999887           99999


Q ss_pred             hcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          82 SNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        82 ~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                      ++|+.. +++|+++|++++.+|..|.+|+|+|+..++..++-+|+.++++++.+|..|+||||+|+.. +....+..|++
T Consensus       121 r~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAayk-g~~~~v~~LL~  199 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYK-GFALFVRRLLK  199 (600)
T ss_pred             HcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHh-cccHHHHHHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999998 77766999999


Q ss_pred             CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccc
Q psy8012         161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLK  239 (271)
Q Consensus       161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (271)
                      .|++++..|+..|.||||+| ..|+.+++.++++.|++.                                         
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~-----------------------------------------  238 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADL-----------------------------------------  238 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcc-----------------------------------------
Confidence            99999999966999999999 999999999556655653                                         


Q ss_pred             ccccCCCchHHHHHHHh
Q psy8012         240 VTKNDAGETILDIAKKR  256 (271)
Q Consensus       240 ~~~d~~g~tpl~~A~~~  256 (271)
                      +.+|.+|.||+++|.++
T Consensus       239 d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  239 DKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccCCCCHHHHHHHh
Confidence            36888899999999877

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-32  Score=236.86  Aligned_cols=232  Identities=22%  Similarity=0.186  Sum_probs=191.3

Q ss_pred             hHHHHHH---hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHH--HhHHHHHHHHHcCcHH---------HHHHH
Q psy8012          16 PIAIAIQ---IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL--EERKAINDLLRLNLDF---------LKNVR   81 (271)
Q Consensus        16 ~L~~A~~---~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~--~~~~~~~~L~~~g~~~---------l~~a~   81 (271)
                      +||.-+.   ..+.+++++|+++|+++|.+ ..|.||    +|.++..  ++.++++.|+++|+++         |+.|+
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~GadvN~~-~~g~t~----l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~   77 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRTGFDVNEE-YRGNSI----LLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVL   77 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHcCCCcccc-cCCCCH----HHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHH
Confidence            4444443   47889999999999999998 679999    8776554  3689999999999876         88776


Q ss_pred             hc------ChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCc-cccCCCCCcHHHHHHHh-C
Q psy8012          82 SN------KYDE-VKKNIEDGACINVSSERCGSALIYAAWK---GYEEIVDLLLDNGADV-NFKSATGFTALHMACRF-H  149 (271)
Q Consensus        82 ~~------~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~~~t~l~~a~~~-~  149 (271)
                      ..      +..+ +++|++.|+++|.++..|.||||.|+..   ++.+++++|+++|+++ +..+..|+||||+|+.. .
T Consensus        78 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~  157 (494)
T PHA02989         78 RNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFS  157 (494)
T ss_pred             hccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhcc
Confidence            54      3567 9999999999999999999999988765   6789999999999999 78899999999998764 2


Q ss_pred             CCHHHHHHHHhCCCCccc-cCCCCCCCHHHHH-hc----CCchHHHHHHhchhhHHHHhhcCCccccc------------
Q psy8012         150 DDDSIVRKLLRHGAYYNV-VDGKTGKTPLLHA-GK----GAREVNTVLLYFIHEIFKLMANNDTTILD------------  211 (271)
Q Consensus       150 ~~~~~~~~Ll~~g~~~~~-~~~~~g~tpL~~A-~~----~~~~~~~~L~~~g~~~~~~~~~~~~~~~~------------  211 (271)
                      ++.+++++|+++|++++. .+. .|.||||+| ..    ++.+++++|+++|++++..+. ++.++++            
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~-~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~-~~~t~l~~~~~~~~~~~~~  235 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSL-YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN-GSESVLESFLDNNKILSKK  235 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccc-cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC-ccccHHHHHHHhchhhccc
Confidence            588999999999999998 455 899999988 54    489999999999999886654 3333332            


Q ss_pred             chHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         212 RLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      ..+.+++| ..+++             ++.+|..|.||||+|++.|+.+++++|-+.
T Consensus       236 ~~~il~~l-~~~ad-------------vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        236 EFKVLNFI-LKYIK-------------INKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             chHHHHHH-HhCCC-------------CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence            23444544 44566             778999999999999999999999998763

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.9e-32  Score=242.16  Aligned_cols=256  Identities=17%  Similarity=0.078  Sum_probs=192.2

Q ss_pred             CCCCCCCCCChHHHHHHh---CCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhH----HHHHHHHHcCc----
Q psy8012           6 DPYVPYEDHKPIAIAIQI---GDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEER----KAINDLLRLNL----   74 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~----~~~~~L~~~g~----   74 (271)
                      +...|.+|.||||+|++.   |+.+++++|+++|++++.++..|.||    ||+|+..|+.    ++++.|++.+.    
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~Tp----L~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTP----LEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCH----HHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            345688999999998665   88999999999999999999999999    9999998874    56678887643    


Q ss_pred             ----HHHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHH--HhCCHHHHHHHHHCCCCccccCC---CC------
Q psy8012          75 ----DFLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAA--WKGYEEIVDLLLDNGADVNFKSA---TG------  138 (271)
Q Consensus        75 ----~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~---~~------  138 (271)
                          ..+++|+..++.+ +++|++.|++++..|..|.||||.++  ..|+.+++++|+++|++++..+.   .|      
T Consensus       101 ~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        101 NDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             CCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence                2377888899999 99999999999999999999999654  57899999999999999986542   33      


Q ss_pred             -----CcHHHHHHHh----------CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCc--hHHHHHHhchhhHHH
Q psy8012         139 -----FTALHMACRF----------HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR--EVNTVLLYFIHEIFK  200 (271)
Q Consensus       139 -----~t~l~~a~~~----------~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~--~~~~~L~~~g~~~~~  200 (271)
                           .||||+|+..          .++.+++++|+++|+|+|..+. .|.||||+| ..++.  +++++|++ |+++..
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~-~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDK-NYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCC-CCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence                 5999999862          1578999999999999999998 999999999 88875  79999985 876643


Q ss_pred             Hhh---cCCcc--cc-------------cchHHHHHHHhhccCCCC-CCCCCCcccc-----cccccCCCchHHHHHHH-
Q psy8012         201 LMA---NNDTT--IL-------------DRLDEMKSLILEGTKEFG-PGDYNNFSLL-----KVTKNDAGETILDIAKK-  255 (271)
Q Consensus       201 ~~~---~~~~~--~~-------------~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-----~~~~d~~g~tpl~~A~~-  255 (271)
                      ...   ....+  .+             ...++++.|+..|++.-. ...+......     .-.....+.|++|.+.+ 
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEY  338 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHH
Confidence            211   11111  11             145779999999986210 0000000000     00124456667665553 


Q ss_pred             --hCCCc--HHHHHHH
Q psy8012         256 --RGFPL--LEELEKK  267 (271)
Q Consensus       256 --~~~~~--~~~ll~~  267 (271)
                        .|..+  ++++|-+
T Consensus       339 ~~~g~~~~~~v~~Ll~  354 (661)
T PHA02917        339 MTFGDIDIPLVECMLE  354 (661)
T ss_pred             HHcCCCcHHHHHHHHH
Confidence              66544  7777754

>KOG0510|consensus

Probab=100.00  E-value=1.6e-32  Score=235.31  Aligned_cols=240  Identities=24%  Similarity=0.255  Sum_probs=217.2

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN   79 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~   79 (271)
                      |..|.||||.|++....+.+++|++.|++++..+..+.+|    +|+|+..++.++.+.|+++|+++          ||.
T Consensus        85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~ap----lh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen   85 DSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAP----LHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHL  160 (929)
T ss_pred             hcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCc----hhhccccchHHHHHHHHHhcCCccccccCCCchhhH
Confidence            6779999999999999999999999999999999999999    99999999999999999999877          999


Q ss_pred             HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHH-----CCCCccccCCCCCcHHHHHHHhCCCHH
Q psy8012          80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-----NGADVNFKSATGFTALHMACRFHDDDS  153 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-----~~~~~~~~~~~~~t~l~~a~~~~~~~~  153 (271)
                      |+.+++.+ .+.|+..|+++-..+.+|.+|+|.|+++|..|+.+.++.     ++..++..+..+.+|||.|+.. |+.+
T Consensus       161 A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~-g~~e  239 (929)
T KOG0510|consen  161 AARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG-GDIE  239 (929)
T ss_pred             HHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc-CCHH
Confidence            99999999 999999999999999999999999999999999999997     5677899899999999999998 9999


Q ss_pred             HHHHHHhCCCCc---------------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cc
Q psy8012         154 IVRKLLRHGAYY---------------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DR  212 (271)
Q Consensus       154 ~~~~Ll~~g~~~---------------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~  212 (271)
                      .++.+++.|..+               |..|+ .|.||||+| ..|+.+++..|+..|++++.+..++.++..     .+
T Consensus       240 ~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~-dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~  318 (929)
T KOG0510|consen  240 MLKMCLQNGKKIADVQLDAMQQEKELVNDEDN-DGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGR  318 (929)
T ss_pred             HHHHHHhCccccchhhhHHHHHHHHHhhcccc-cCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHccc
Confidence            999999876543               23455 799999999 999999999999999999988755554432     56


Q ss_pred             hHHHHHHHh-hccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         213 LDEMKSLIL-EGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       213 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      +.+++.|+. .+...            .+..|..|+||||+|+++|+..++++|-+
T Consensus       319 ~ntv~rLL~~~~~rl------------lne~D~~g~tpLHlaa~~gH~~v~qlLl~  362 (929)
T KOG0510|consen  319 INTVERLLQESDTRL------------LNESDLHGMTPLHLAAKSGHDRVVQLLLN  362 (929)
T ss_pred             HHHHHHHHhCcCccc------------cccccccCCCchhhhhhcCHHHHHHHHHh
Confidence            889999998 44443            67899999999999999999999999865

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.4e-32  Score=235.20  Aligned_cols=239  Identities=17%  Similarity=0.140  Sum_probs=200.2

Q ss_pred             CCCCCChHHHHHHh--CCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHH-----HhHHHHHHHHHcCcHH------
Q psy8012          10 PYEDHKPIAIAIQI--GDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL-----EERKAINDLLRLNLDF------   76 (271)
Q Consensus        10 ~~~g~t~L~~A~~~--g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~-----~~~~~~~~L~~~g~~~------   76 (271)
                      ...|.|+++.+...  ++.+++++|+++|++++.++..|.||    ||.|+..     +..+++++|+++|+++      
T Consensus        33 ~~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~Tp----L~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~  108 (489)
T PHA02798         33 IVNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTP----LCTILSNIKDYKHMLDIVKILIENGADINKKNSD  108 (489)
T ss_pred             hcccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCCh----HHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCC
Confidence            35677887755544  57899999999999999999999999    9988753     6789999999998876      


Q ss_pred             ----HHHHHhcC---hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCC---HHHHHHHHHCCCCccccC-CCCCcHHHH
Q psy8012          77 ----LKNVRSNK---YDE-VKKNIEDGACINVSSERCGSALIYAAWKGY---EEIVDLLLDNGADVNFKS-ATGFTALHM  144 (271)
Q Consensus        77 ----l~~a~~~~---~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~-~~~~t~l~~  144 (271)
                          ||+|+..+   +.+ +++|++.|++++..+..|.||||+|+..++   .+++++|++.|++++..+ ..|.||||.
T Consensus       109 G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~  188 (489)
T PHA02798        109 GETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHC  188 (489)
T ss_pred             cCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHH
Confidence                99998875   667 999999999999999999999999999987   899999999999998874 578999998


Q ss_pred             HHHh---CCCHHHHHHHHhCCCCccccCCCCCCCHHH-------HH-hcCCchHHHHHHhchhhHHHHhhcCCcccc---
Q psy8012         145 ACRF---HDDDSIVRKLLRHGAYYNVVDGKTGKTPLL-------HA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL---  210 (271)
Q Consensus       145 a~~~---~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~-------~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~---  210 (271)
                      ++..   .++.+++++|+++|++++..+. .|.++++       ++ ..+..+++.+|+. +++++..+..+.++.+   
T Consensus       189 ~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~-~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~  266 (489)
T PHA02798        189 YFKYNIDRIDADILKLFVDNGFIINKENK-SHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQVDELGFNPLYYSV  266 (489)
T ss_pred             HHHhccccCCHHHHHHHHHCCCCcccCCc-cccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCcCcCCccHHHHHH
Confidence            8764   2478999999999999999887 7888876       23 4566788888766 5888877665554433   


Q ss_pred             --cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         211 --DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       211 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                        ...+.+++|+..|++             ++.+|..|+|||++|+++++.++++.|-+
T Consensus       267 ~~~~~~~v~~LL~~GAd-------------in~~d~~G~TpL~~A~~~~~~~iv~~lL~  312 (489)
T PHA02798        267 SHNNRKIFEYLLQLGGD-------------INIITELGNTCLFTAFENESKFIFNSILN  312 (489)
T ss_pred             HcCcHHHHHHHHHcCCc-------------ccccCCCCCcHHHHHHHcCcHHHHHHHHc
Confidence              358889999999999             78999999999999999999999888765

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-31  Score=230.02  Aligned_cols=246  Identities=15%  Similarity=0.080  Sum_probs=172.4

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhC--CHHHHHHHHHCCCCC--CchhhcccchHHHHHHHHHH--HHhHHHHHHHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIG--DPQIVKELQNHGAQI--DKEIYSKNKAAARIAHSALE--LEERKAINDLL-----   70 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~--~~~~~~g~t~~~~~l~~A~~--~~~~~~~~~L~-----   70 (271)
                      |++++ ..|..|.||||+|+..+  +.+++++|++.|++.  +..+..+.+|    +|.++.  .++.+++++|+     
T Consensus        67 GAdin-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~----l~~y~~s~n~~~~~vk~Li~~~~~  141 (672)
T PHA02730         67 GVERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFD----LYSYMSSDNIDLRLLKYLIVDKRI  141 (672)
T ss_pred             CCCCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCch----HHHHHHhcCCcHHHHHHHHHhcCC
Confidence            66666 44788999999999977  799999999996543  5555445566    555444  44455555555     


Q ss_pred             ----------------------------------HcCcHH------------------HHHH------HhcChHH-HHHH
Q psy8012          71 ----------------------------------RLNLDF------------------LKNV------RSNKYDE-VKKN   91 (271)
Q Consensus        71 ----------------------------------~~g~~~------------------l~~a------~~~~~~~-~~~l   91 (271)
                                                        ++|+++                  |+++      ...+..+ +++|
T Consensus       142 ~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lL  221 (672)
T PHA02730        142 RPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCL  221 (672)
T ss_pred             ChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHH
Confidence                                              444333                  2211      2334556 7777


Q ss_pred             HhcCCCCccCCCCCCcHHHH--HHHhCCHHHHHHHHH--------------------------------CCCCccc----
Q psy8012          92 IEDGACINVSSERCGSALIY--AAWKGYEEIVDLLLD--------------------------------NGADVNF----  133 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~--a~~~~~~~~~~~Ll~--------------------------------~~~~~~~----  133 (271)
                      +++|+++|.+|..|.||||+  +...++.|++++|++                                .|+|+..    
T Consensus       222 Is~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  301 (672)
T PHA02730        222 IDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLL  301 (672)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHH
Confidence            77777777777788888874  444566788888887                                5666544    


Q ss_pred             ----------------cCCCCCc---------------------HHHHHHHhC--CCHHHHHHHHhCCCCccccCCCCCC
Q psy8012         134 ----------------KSATGFT---------------------ALHMACRFH--DDDSIVRKLLRHGAYYNVVDGKTGK  174 (271)
Q Consensus       134 ----------------~~~~~~t---------------------~l~~a~~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~  174 (271)
                                      .+..|.+                     .||.-....  .+.+++++|+++|+++|.. . .|.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~-~G~  379 (672)
T PHA02730        302 IEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-T-DNN  379 (672)
T ss_pred             hhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-C-CCC
Confidence                            3333433                     455555542  3588889999999999975 5 799


Q ss_pred             CHHHHH-hcCC----chHHHHHHhchh--hHHHHhhcCCccccc------------------chHHHHHHHhhccCCCCC
Q psy8012         175 TPLLHA-GKGA----REVNTVLLYFIH--EIFKLMANNDTTILD------------------RLDEMKSLILEGTKEFGP  229 (271)
Q Consensus       175 tpL~~A-~~~~----~~~~~~L~~~g~--~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~  229 (271)
                      ||||+| ..++    .+++++|+++|+  +++..+..+.+ +++                  .++++++|+..|++    
T Consensus       380 TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T-~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD----  454 (672)
T PHA02730        380 YPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRL-CMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD----  454 (672)
T ss_pred             cHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCc-hHhHHHHHHhccccccccchhHHHHHHHHHhcccc----
Confidence            999988 5553    799999999987  46655444444 332                  12357999999998    


Q ss_pred             CCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         230 GDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       230 ~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                               ++.+|..|.||||+|+..++.+++++|-++
T Consensus       455 ---------INakD~~G~TPLh~Aa~~~~~eive~LI~~  484 (672)
T PHA02730        455 ---------IDMIDNENKTLLYYAVDVNNIQFARRLLEY  484 (672)
T ss_pred             ---------hhccCCCCCCHHHHHHHhCCHHHHHHHHHC
Confidence                     789999999999999999999999999764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.98  E-value=5.2e-31  Score=204.35  Aligned_cols=178  Identities=21%  Similarity=0.189  Sum_probs=151.5

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-H
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-V   88 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~   88 (271)
                      ...+.||||.|++.|+.++++.|++.   ++..+..|.||    ||+|+..+                     .++.+ +
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~Tp----Lh~a~~~~---------------------~~~~eiv   69 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETP----IFSCLEKD---------------------KVNVEIL   69 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCH----HHHHHHcC---------------------CCCHHHH
Confidence            35689999999999999999999975   46678899999    66665432                     12344 6


Q ss_pred             HHHHhcCCCCccCC-CCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh-CCCHHHHHHHHhCCC
Q psy8012          89 KKNIEDGACINVSS-ERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA  163 (271)
Q Consensus        89 ~~ll~~~~~~~~~~-~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~~Ll~~g~  163 (271)
                      ++|++.|++++.++ ..|.||||+|+..   ++.+++++|+++|++++..+..|.||||+|+.. .++.+++++|++.|+
T Consensus        70 ~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         70 KFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             HHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence            66677788999886 4899999998764   479999999999999999999999999998863 268999999999999


Q ss_pred             CccccCCCCCCCHHHH-H-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccccc
Q psy8012         164 YYNVVDGKTGKTPLLH-A-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVT  241 (271)
Q Consensus       164 ~~~~~~~~~g~tpL~~-A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (271)
                      +++.++. .|.||||. | ..++.+++++|+++|++++                                         .
T Consensus       150 din~~d~-~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~-----------------------------------------~  187 (209)
T PHA02859        150 SFLNKDF-DNNNILYSYILFHSDKKIFDFLTSLGIDIN-----------------------------------------E  187 (209)
T ss_pred             CcccccC-CCCcHHHHHHHhcCCHHHHHHHHHcCCCCC-----------------------------------------C
Confidence            9999998 99999995 5 6789999999999999854                                         7


Q ss_pred             ccCCCchHHHHHHHhC
Q psy8012         242 KNDAGETILDIAKKRG  257 (271)
Q Consensus       242 ~d~~g~tpl~~A~~~~  257 (271)
                      +|..|+||||+|..++
T Consensus       188 ~d~~g~tpl~la~~~~  203 (209)
T PHA02859        188 TNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCCCCCHHHHHhhhh
Confidence            8999999999998765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=224.97  Aligned_cols=238  Identities=21%  Similarity=0.169  Sum_probs=186.7

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHH-------------
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND-------------   68 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~-------------   68 (271)
                      |.+++ ..+.+|.||||+||..|+.+++++|++.+.+.+.  ..+.+|    ++.|+..++.++++.             
T Consensus        60 gadvn-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~----l~~a~~~~~~ei~~~Ll~~~~~~~~~~~  132 (477)
T PHA02878         60 GHNVN-QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVA----IKDAFNNRNVEIFKIILTNRYKNIQTID  132 (477)
T ss_pred             CCCCC-CCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhh----HHHHHHcCCHHHHHHHHhCcccCcccCc
Confidence            44444 3578899999999999999999999998765544  456777    888877766555544             


Q ss_pred             --------------------HHHcCc-----------HHHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhC
Q psy8012          69 --------------------LLRLNL-----------DFLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKG  116 (271)
Q Consensus        69 --------------------L~~~g~-----------~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~  116 (271)
                                          |+++|+           .+||+|+..++.+ +++|++.|++++..+..|.||||+|+..+
T Consensus       133 ~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~  212 (477)
T PHA02878        133 LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHY  212 (477)
T ss_pred             HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC
Confidence                                444433           3399999999999 99999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHHhcCCchHHHHHHhchh
Q psy8012         117 YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIH  196 (271)
Q Consensus       117 ~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~~g~  196 (271)
                      +.+++++|++.|++++..+..|.||||+|+...++.+++++|+++|++++.++...|.||||+| .++.+++++|+++|+
T Consensus       213 ~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-~~~~~~v~~Ll~~ga  291 (477)
T PHA02878        213 NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS-IKSERKLKLLLEYGA  291 (477)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-ccCHHHHHHHHHCCC
Confidence            9999999999999999999999999999997536899999999999999998864699999999 456899999999999


Q ss_pred             hHHHHhhcCCcccccc------hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHH
Q psy8012         197 EIFKLMANNDTTILDR------LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKK  255 (271)
Q Consensus       197 ~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~  255 (271)
                      +++..+..+.++....      .+..+.|+........        ...+.++..|.++-..+..
T Consensus       292 din~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~--------~~~~~~~~~g~~~n~~~i~  348 (477)
T PHA02878        292 DINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKR--------IKPDIKNSEGFIDNMDCIT  348 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHh--------ccCcccCcHHHHHHHHHHh
Confidence            9987766665543321      2345566554321000        0034667777776544443

>KOG0508|consensus

Probab=99.97  E-value=9.8e-31  Score=212.12  Aligned_cols=186  Identities=27%  Similarity=0.305  Sum_probs=158.9

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHC-CCCCC--------chhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNH-GAQID--------KEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNV   80 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~--------~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a   80 (271)
                      ..+|.|||-+||++|+.++|++|+++ ++++.        -....|-+|                           |-.|
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp---------------------------LWaA   91 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP---------------------------LWAA   91 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch---------------------------hhHH
Confidence            56788999999999999999998884 45444        223456666                           5555


Q ss_pred             HhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHH
Q psy8012          81 RSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL  159 (271)
Q Consensus        81 ~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll  159 (271)
                      +.-|+.+ +|.|+..|+++|.......|||..||.-|+.+++++|+++|+|+++.|..|.|+|++|+.. |+.+++++|+
T Consensus        92 saAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk-Gh~~I~qyLl  170 (615)
T KOG0508|consen   92 SAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK-GHVDIAQYLL  170 (615)
T ss_pred             hccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc-CchHHHHHHH
Confidence            5556666 6666777888888888888999999999999999999999999999999999999999998 9999999999


Q ss_pred             hCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccc
Q psy8012         160 RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLL  238 (271)
Q Consensus       160 ~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (271)
                      +.|+|+|.++. .|.|+||-| ..|+.+++++|+++|+.+                                        
T Consensus       171 e~gADvn~ks~-kGNTALH~caEsG~vdivq~Ll~~ga~i----------------------------------------  209 (615)
T KOG0508|consen  171 EQGADVNAKSY-KGNTALHDCAESGSVDIVQLLLKHGAKI----------------------------------------  209 (615)
T ss_pred             HhCCCcchhcc-cCchHHHhhhhcccHHHHHHHHhCCcee----------------------------------------
Confidence            99999999998 899999999 999999999999999876                                        


Q ss_pred             cccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012         239 KVTKNDAGETILDIAKKRGFPLLEELEK  266 (271)
Q Consensus       239 ~~~~d~~g~tpl~~A~~~~~~~~~~ll~  266 (271)
                        .+|..|.|||-.|+..|+.+++++|-
T Consensus       210 --~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  210 --DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             --eecCCCCchHHHHhhhcchHHHHHHh
Confidence              47888999999999999999999886

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=220.66  Aligned_cols=193  Identities=21%  Similarity=0.193  Sum_probs=163.1

Q ss_pred             CCCCCCCCCCCCCChHHHHHHh-----CCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH---hHHHHHHHHHcC
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQI-----GDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE---ERKAINDLLRLN   73 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~-----g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~---~~~~~~~L~~~g   73 (271)
                      |.+++ ..+..|.||||.|+..     +..+++++|+++|++++.++..|.||    ||+|+..+   +.+++++|+++|
T Consensus        61 Gadvn-~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~Tp----Lh~a~~~~~~~~~~iv~~Ll~~G  135 (489)
T PHA02798         61 GANVN-GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETP----LYCLLSNGYINNLEILLFMIENG  135 (489)
T ss_pred             CCCCC-CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcH----HHHHHHcCCcChHHHHHHHHHcC
Confidence            55444 3467899999998864     67899999999999999999999999    99999875   789999999998


Q ss_pred             cHH----------HHHHHhcCh---HH-HHHHHhcCCCCccCC-CCCCcHHHHHHHh----CCHHHHHHHHHCCCCcc--
Q psy8012          74 LDF----------LKNVRSNKY---DE-VKKNIEDGACINVSS-ERCGSALIYAAWK----GYEEIVDLLLDNGADVN--  132 (271)
Q Consensus        74 ~~~----------l~~a~~~~~---~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~----~~~~~~~~Ll~~~~~~~--  132 (271)
                      +++          ||+|+..++   .+ +++|++.|++++..+ ..|.||+|.++..    ++.+++++|+++|++++  
T Consensus       136 advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~  215 (489)
T PHA02798        136 ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKE  215 (489)
T ss_pred             CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccC
Confidence            776          999999887   77 999999999998875 5788999988764    47888888888876543  


Q ss_pred             -------------------------------------ccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCC
Q psy8012         133 -------------------------------------FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT  175 (271)
Q Consensus       133 -------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t  175 (271)
                                                           .+|..|+||||+|+.. ++.+++++|++.|+|++..+. .|.|
T Consensus       216 ~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~-~~~~~v~~LL~~GAdin~~d~-~G~T  293 (489)
T PHA02798        216 NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH-NNRKIFEYLLQLGGDINIITE-LGNT  293 (489)
T ss_pred             CccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc-CcHHHHHHHHHcCCcccccCC-CCCc
Confidence                                                 4556788999999988 889999999999999999888 8999


Q ss_pred             HHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012         176 PLLHA-GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       176 pL~~A-~~~~~~~~~~L~~~g~~~~~~  201 (271)
                      |||.| ..++.++++.|++++++++..
T Consensus       294 pL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        294 CLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             HHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            99999 888899999999988877643

>KOG4177|consensus

Probab=99.97  E-value=1.2e-30  Score=235.74  Aligned_cols=245  Identities=25%  Similarity=0.280  Sum_probs=224.9

Q ss_pred             CCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           4 PYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         4 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      +-.......|.||+|.|+.+|..+.++.++..|++++.+...|.||    +|.|+..++.++++.+++.|+++       
T Consensus       365 ~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTp----lh~aa~~~~~~~v~l~l~~gA~~~~~~~lG  440 (1143)
T KOG4177|consen  365 AQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTP----LHVAAHYGNPRVVKLLLKRGASPNAKAKLG  440 (1143)
T ss_pred             cccCcccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcce----eeehhhccCcceEEEEeccCCChhhHhhcC
Confidence            4556667889999999999999999999999999999999999999    99999999999999999988776       


Q ss_pred             ---HHHHHhcC-hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012          77 ---LKNVRSNK-YDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD  151 (271)
Q Consensus        77 ---l~~a~~~~-~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  151 (271)
                         +|.|+..+ ..+ ...++++|.+++.....|.||||.|+..|+.+.++.+++.++..+.....+.+++|.+... +.
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~-~~  519 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE-DT  519 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh-hh
Confidence               99999999 777 8888999999999999999999999999999999999999988888888999999999998 99


Q ss_pred             HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccccc------chHHHHHHHhhcc
Q psy8012         152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILD------RLDEMKSLILEGT  224 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~  224 (271)
                      ..+++.++++|++++.++. .|+||||.| .+|+..+|++|+++|++++.++ +.+.+++|      ..+++..|+.+|+
T Consensus       520 v~~~~~l~~~ga~v~~~~~-r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~-~~G~TPLH~Aa~~G~~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTG-RGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD-KLGYTPLHQAAQQGHNDIAELLLKHGA  597 (1143)
T ss_pred             HHHHHHHhhcCCceehhcc-cccchHHHHHhcCCchHHHHhhhCCccccccC-CCCCChhhHHHHcChHHHHHHHHHcCC
Confidence            9999999999999999998 999999999 9999999999999999999888 55555554      5889999999999


Q ss_pred             CCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         225 KEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      +             +|..|.+|.|||++|++.|+.+++++++..
T Consensus       598 ~-------------vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  598 S-------------VNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             C-------------CCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            9             889999999999999999999999998863

>KOG0509|consensus

Probab=99.96  E-value=1.7e-29  Score=212.41  Aligned_cols=171  Identities=24%  Similarity=0.231  Sum_probs=160.9

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchh-hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--------
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEI-YSKNKAAARIAHSALELEERKAINDLLRLNLDF--------   76 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--------   76 (271)
                      ....|.+|.|+||+|+.+++++++++|+++|+++|... .-+.||    ||+|+++|+..++..|+++|+++        
T Consensus        71 v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stP----LHWAar~G~~~vv~lLlqhGAdpt~~D~~G~  146 (600)
T KOG0509|consen   71 VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTP----LHWAARNGHISVVDLLLQHGADPTLKDKQGL  146 (600)
T ss_pred             CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCc----chHHHHcCcHHHHHHHHHcCCCCceecCCCC
Confidence            34567799999999999999999999999999999887 569999    99999999999999999999988        


Q ss_pred             --HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCH
Q psy8012          77 --LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDD  152 (271)
Q Consensus        77 --l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~  152 (271)
                        +|.|+..++.. +-+++.+++++|.+|..|+||||+|+..|+...+..|+..|+.+...| ..|.||||+|+.. |+.
T Consensus       147 ~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~-gN~  225 (600)
T KOG0509|consen  147 TPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVG-GNL  225 (600)
T ss_pred             cHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhc-CCc
Confidence              99999999999 999999999999999999999999999999888999999999999887 8999999999998 999


Q ss_pred             HHHHHHHhCCCCccccCCCCCCCHHHHH-hc
Q psy8012         153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK  182 (271)
Q Consensus       153 ~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~  182 (271)
                      .++.++++.|++.+.++. +|.||+..| ..
T Consensus       226 ~~v~Ll~~g~~~~d~~~~-~g~tp~~LA~~~  255 (600)
T KOG0509|consen  226 TAVKLLLEGGADLDKTNT-NGKTPFDLAQER  255 (600)
T ss_pred             ceEehhhhcCCccccccc-CCCCHHHHHHHh
Confidence            999977788899999998 899999999 55

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=208.24  Aligned_cols=208  Identities=17%  Similarity=0.138  Sum_probs=161.0

Q ss_pred             CCCCCCCChHHHHHHhC-------CHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHH--hHHHHHHHHHcCcHH--
Q psy8012           8 YVPYEDHKPIAIAIQIG-------DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELE--ERKAINDLLRLNLDF--   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g-------~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~--~~~~~~~L~~~g~~~--   76 (271)
                      +.|..|.||||+|+.++       +.++++.|+++|++++..|..|.||    ||+|+...  +.++++.|++..-+.  
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~----l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTT----LYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChH----HHHHHHcccchHHHHHHHHhccccccc
Confidence            55777999999999999       8999999999999999999999999    99999999  899999998853211  


Q ss_pred             ----------------------------------------------------------------HHHHHhcC--hHH-HH
Q psy8012          77 ----------------------------------------------------------------LKNVRSNK--YDE-VK   89 (271)
Q Consensus        77 ----------------------------------------------------------------l~~a~~~~--~~~-~~   89 (271)
                                                                                      |+.-...+  +.+ ++
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                            33333333  445 88


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCC--CcHHHHHHHhCCCH---HHHHHHHhCCCC
Q psy8012          90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG--FTALHMACRFHDDD---SIVRKLLRHGAY  164 (271)
Q Consensus        90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~--~t~l~~a~~~~~~~---~~~~~Ll~~g~~  164 (271)
                      +|++.|++...  ....++++.|+..|+.+++++|+++|++++..+..|  .||||.|+.. ...   +++++|+++|+|
T Consensus       326 ~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n-~~~~v~~IlklLIs~GAD  402 (631)
T PHA02792        326 CMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSI-HESDVLSILKLCKPYIDD  402 (631)
T ss_pred             HHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHh-ccHhHHHHHHHHHhcCCc
Confidence            88888887641  224556778888888888888888888888777554  5788876654 433   356777888888


Q ss_pred             ccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccccccc
Q psy8012         165 YNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKN  243 (271)
Q Consensus       165 ~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d  243 (271)
                      +|.++. .|+||||+| ..++.+++++|+++|+++                                         +.+|
T Consensus       403 IN~kD~-~G~TPLh~Aa~~~n~eivelLLs~GADI-----------------------------------------N~kD  440 (631)
T PHA02792        403 INKIDK-HGRSILYYCIESHSVSLVEWLIDNGADI-----------------------------------------NITT  440 (631)
T ss_pred             cccccc-cCcchHHHHHHcCCHHHHHHHHHCCCCC-----------------------------------------CCcC
Confidence            888887 788888888 778888888888888774                                         4789


Q ss_pred             CCCchHHHHHHH---hCCCcHHHH
Q psy8012         244 DAGETILDIAKK---RGFPLLEEL  264 (271)
Q Consensus       244 ~~g~tpl~~A~~---~~~~~~~~l  264 (271)
                      ..|.|||++|+.   .++.++.+.
T Consensus       441 ~~G~TpL~~A~~~~~~~~~~i~~~  464 (631)
T PHA02792        441 KYGSTCIGICVILAHACIPEIAEL  464 (631)
T ss_pred             CCCCCHHHHHHHHHhcccHHHHHH
Confidence            999999999975   444455433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=204.69  Aligned_cols=200  Identities=20%  Similarity=0.024  Sum_probs=157.3

Q ss_pred             HHHHhCCHHHHHHHHHCCCCCC------chhhcccchHHHHHHHHHH--HHhHHHHHHHHHcCcHH--------HHHHHh
Q psy8012          19 IAIQIGDPQIVKELQNHGAQID------KEIYSKNKAAARIAHSALE--LEERKAINDLLRLNLDF--------LKNVRS   82 (271)
Q Consensus        19 ~A~~~g~~~~~~~Ll~~g~~~~------~~~~~g~t~~~~~l~~A~~--~~~~~~~~~L~~~g~~~--------l~~a~~   82 (271)
                      +|+..+..++++.|+.+|++++      .++..++|+    ||+++.  .++.+++++|+++|+++        +|.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~----L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDL----LLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHH----HHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Confidence            7888888888888888888877      677778888    888888  77888888888888875        888888


Q ss_pred             cChHH-HHHHHhcCCCCc-cC-----CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          83 NKYDE-VKKNIEDGACIN-VS-----SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        83 ~~~~~-~~~ll~~~~~~~-~~-----~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      .++.+ +++|+++|++.. ..     +..+.+++|.|...++.+++++|+++|++++..+..|.||||+|+.. ++.+++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~-g~~eiV  237 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYA-GYIDLV  237 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHc-CCHHHH
Confidence            88888 888888887432 21     13467888888888888999999999999998888899999999987 889999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCC--------chHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhcc
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGA--------REVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGT  224 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~--------~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  224 (271)
                      ++|+++|++++.++. .|+||||+| ..|+        .+++++|+++|++++..............+.++.++....
T Consensus       238 elLL~~GAdIN~~d~-~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~~~~~~~n~~~ik~lI~y~~  314 (437)
T PHA02795        238 SWLLENGANVNAVMS-NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAILNNTIENHDVIKLCIKYFM  314 (437)
T ss_pred             HHHHHCCCCCCCcCC-CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHhhhcccchHHHHHHHHHHHH
Confidence            999999999998888 899999988 7764        5889999988887765543322222234566666665554

>KOG4177|consensus

Probab=99.96  E-value=9.4e-30  Score=229.90  Aligned_cols=242  Identities=29%  Similarity=0.267  Sum_probs=207.3

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----------   76 (271)
                      ..|..|.||||.|+..|+++++.+++.+|+.++..+..|.||    +|.|+..+..++.++|++.|+++           
T Consensus       237 a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tp----lh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l  312 (1143)
T KOG4177|consen  237 AKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETP----LHMAARAGQVEVCKLLLQNGADVLAKARDDQTPL  312 (1143)
T ss_pred             cccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCc----chhhhccchhhhHhhhhccCcccccccccccChh
Confidence            356789999999999999999999999999999999999999    99999999999999999998877           


Q ss_pred             -----------------------------------------------------------------HHHHHhcChHH-HHH
Q psy8012          77 -----------------------------------------------------------------LKNVRSNKYDE-VKK   90 (271)
Q Consensus        77 -----------------------------------------------------------------l~~a~~~~~~~-~~~   90 (271)
                                                                                       ++.|+..+..+ +++
T Consensus       313 ~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~L  392 (1143)
T KOG4177|consen  313 HIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVEL  392 (1143)
T ss_pred             hhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHh
Confidence                                                                             78888888888 888


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC-CHHHHHHHHhCCCCccccC
Q psy8012          91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD-DDSIVRKLLRHGAYYNVVD  169 (271)
Q Consensus        91 ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~~Ll~~g~~~~~~~  169 (271)
                      ++..|++++.++..|.||||.++.+++..+++.+++.|++++..+..|.|++|+|+.. + ..++...++.+|+++|...
T Consensus       393 ll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~-g~~~~~~~~l~~~g~~~n~~s  471 (1143)
T KOG4177|consen  393 LLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK-GRYLQIARLLLQYGADPNAVS  471 (1143)
T ss_pred             hhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc-ccHhhhhhhHhhcCCCcchhc
Confidence            8888888888888899999999999998888888888898888888899999999987 7 7888888889999999998


Q ss_pred             CCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhh--------------------------------cCCcccc------
Q psy8012         170 GKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMA--------------------------------NNDTTIL------  210 (271)
Q Consensus       170 ~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~--------------------------------~~~~~~~------  210 (271)
                      . .|.||||.| ..|+.+++..+++.++..+...+                                ..+.+++      
T Consensus       472 ~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  472 K-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             c-ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhc
Confidence            8 899999999 89999988888887633221111                                1111222      


Q ss_pred             cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      ..++.+++|+.+|++             .+.+|+.|+||||.|+..|+.+++++|-++
T Consensus       551 g~v~~VkfLLe~gAd-------------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  551 GNVDLVKFLLEHGAD-------------VNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             CCchHHHHhhhCCcc-------------ccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence            348888999999998             678999999999999999999999998775

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=211.06  Aligned_cols=241  Identities=15%  Similarity=0.054  Sum_probs=184.1

Q ss_pred             CCCCCCCChHHHHH-HhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHH-HHhHHHHHHHHHcCcHH---------
Q psy8012           8 YVPYEDHKPIAIAI-QIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALE-LEERKAINDLLRLNLDF---------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~-~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~-~~~~~~~~~L~~~g~~~---------   76 (271)
                      +.+.+|.+|+|+-+ ..|+.|++++|+++|++++.++..+.+|    +++|+. .++.|++++|+++|+++         
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~----l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~  141 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIV----EKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYK  141 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcc----eeEeecCCCChHHHHHHHHCCCCcccccccCcc
Confidence            55778889998855 4689999999999999999999889999    999966 69999999999999763         


Q ss_pred             -------------------------------------HHHHHhcC-------hHH-HHHHHhcCCCCccCCCCCCcHHHH
Q psy8012          77 -------------------------------------LKNVRSNK-------YDE-VKKNIEDGACINVSSERCGSALIY  111 (271)
Q Consensus        77 -------------------------------------l~~a~~~~-------~~~-~~~ll~~~~~~~~~~~~g~t~l~~  111 (271)
                                                           ||++...+       ..+ ++.|+.+|++++..|..|.||||+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~  221 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY  221 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH
Confidence                                                 77777777       677 888888888888888888888888


Q ss_pred             HHHhC--CHHHHHHHHHCCCC----------------------cc--ccC--CCCC------------------------
Q psy8012         112 AAWKG--YEEIVDLLLDNGAD----------------------VN--FKS--ATGF------------------------  139 (271)
Q Consensus       112 a~~~~--~~~~~~~Ll~~~~~----------------------~~--~~~--~~~~------------------------  139 (271)
                      |+.+.  +.|+++.|++..-.                      ++  ..+  -.|.                        
T Consensus       222 ~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~  301 (631)
T PHA02792        222 YVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKR  301 (631)
T ss_pred             HHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHH
Confidence            88877  67777777653110                      00  000  0011                        


Q ss_pred             ------cHHHHHHHh-CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcC-Ccccc
Q psy8012         140 ------TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANN-DTTIL  210 (271)
Q Consensus       140 ------t~l~~a~~~-~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~-~~~~~  210 (271)
                            ..||.-... .-+.+++++|+++|++.+ +.  .+..+++.| ..++.+++++|+++|++++..+..+ ..+++
T Consensus       302 ~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r~--~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpL  378 (631)
T PHA02792        302 YTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY-RF--KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPL  378 (631)
T ss_pred             HhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc-cC--CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHH
Confidence                  112222222 136889999999999976 22  356678888 8999999999999999998776554 23444


Q ss_pred             cc---------hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 DR---------LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 ~~---------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      +.         .+.++.|+..|++             ++.+|..|.||||+|+..++.+++++|-+.
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GAD-------------IN~kD~~G~TPLh~Aa~~~n~eivelLLs~  432 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDD-------------INKIDKHGRSILYYCIESHSVSLVEWLIDN  432 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCc-------------cccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            32         3457888999998             789999999999999999999999998763

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=4.5e-28  Score=202.00  Aligned_cols=187  Identities=20%  Similarity=0.136  Sum_probs=164.9

Q ss_pred             HHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------------HHHHHh--cChHH-H
Q psy8012          28 IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------------LKNVRS--NKYDE-V   88 (271)
Q Consensus        28 ~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------------l~~a~~--~~~~~-~   88 (271)
                      ..+|++.+|++++.++.+|         +|+..+..++++.|+++|+++                ||.++.  .++.+ +
T Consensus        64 ~~~~~~~~~~~i~~~~~~~---------~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV  134 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR---------LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIV  134 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh---------HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHH
Confidence            3678999999999877655         788899999999999999873                899998  88999 9


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC------CCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS------ATGFTALHMACRFHDDDSIVRKLLRHG  162 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~------~~~~t~l~~a~~~~~~~~~~~~Ll~~g  162 (271)
                      ++|+++|++++..  .+.||+|.|+..++.+++++|+++|++.....      ..+.+++|.|... +..+++++|+++|
T Consensus       135 ~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~-~~~eIve~LIs~G  211 (437)
T PHA02795        135 DFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP-TVLEIYKLCIPYI  211 (437)
T ss_pred             HHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc-CHHHHHHHHHhCc
Confidence            9999999999874  45899999999999999999999997533221      3477899999987 9999999999999


Q ss_pred             CCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccccc
Q psy8012         163 AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVT  241 (271)
Q Consensus       163 ~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (271)
                      +++|.++. .|.||||+| ..|+.+++++|+++|++++                                         .
T Consensus       212 ADIN~kD~-~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-----------------------------------------~  249 (437)
T PHA02795        212 EDINQLDA-GGRTLLYRAIYAGYIDLVSWLLENGANVN-----------------------------------------A  249 (437)
T ss_pred             CCcCcCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----------------------------------------C
Confidence            99999998 999999999 9999999999999999854                                         7


Q ss_pred             ccCCCchHHHHHHHhCC--------CcHHHHHHHH
Q psy8012         242 KNDAGETILDIAKKRGF--------PLLEELEKKL  268 (271)
Q Consensus       242 ~d~~g~tpl~~A~~~~~--------~~~~~ll~~~  268 (271)
                      +|..|.||||+|+.+|+        .+++++|.+.
T Consensus       250 ~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        250 VMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             cCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            89999999999999995        4899988764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=211.10  Aligned_cols=199  Identities=18%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             HHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCC
Q psy8012          26 PQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL---EERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSS  102 (271)
Q Consensus        26 ~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~  102 (271)
                      ++.++.|+.+|..++.+|..|.||    ||+|+..   |+.++++.|+++|                      ++++..+
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~----Lh~a~~~~~~~~~~~v~~Ll~~g----------------------a~v~~~~   65 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNA----LHAYLFNEHCNNVEVVKLLLDSG----------------------TNPLHKN   65 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcH----HHHHHHhhhcCcHHHHHHHHHCC----------------------CCccccC
Confidence            467899999999899889999999    8887554   4566666665555                      4455555


Q ss_pred             CCCCcHHHHHHHhCCH----HHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHH
Q psy8012         103 ERCGSALIYAAWKGYE----EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL  178 (271)
Q Consensus       103 ~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~  178 (271)
                      ..|.||||+|+..|+.    ++++.|++.+...+..+  ..+++++|+.. ++.+++++|+++|+|+|.++. .|+||||
T Consensus        66 ~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~-~~~e~vk~Ll~~Gadin~~d~-~g~T~L~  141 (661)
T PHA02917         66 WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKSKN-VDVDLIKVLVEHGFDLSVKCE-NHRSVIE  141 (661)
T ss_pred             CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHhhc-CCHHHHHHHHHcCCCCCccCC-CCccHHH
Confidence            5555555555555542    23344444332222211  11333444443 555555555555555555554 4555555


Q ss_pred             HH---hcCCchHHHHHHhchhhHHHHhhcC--C-----------ccccc-----------------chHHHHHHHhhccC
Q psy8012         179 HA---GKGAREVNTVLLYFIHEIFKLMANN--D-----------TTILD-----------------RLDEMKSLILEGTK  225 (271)
Q Consensus       179 ~A---~~~~~~~~~~L~~~g~~~~~~~~~~--~-----------~~~~~-----------------~~~~~~~l~~~~~~  225 (271)
                      .+   ..++.+++++|+++|++++..+..+  +           .++++                 ..+++++|+..|++
T Consensus       142 ~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad  221 (661)
T PHA02917        142 NYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK  221 (661)
T ss_pred             HHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC
Confidence            22   2345555555555555544221110  0           12221                 23455555555555


Q ss_pred             CCCCCCCCCcccccccccCCCchHHHHHHHhCCC--cHHHHHHH
Q psy8012         226 EFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFP--LLEELEKK  267 (271)
Q Consensus       226 ~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~--~~~~ll~~  267 (271)
                                   ++.+|..|.||||+|+++|+.  +++++|.+
T Consensus       222 -------------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        222 -------------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             -------------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence                         568899999999999999986  58888865

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-26  Score=177.32  Aligned_cols=147  Identities=22%  Similarity=0.195  Sum_probs=126.5

Q ss_pred             CCCCCCChHHHHHHhC--CHHHHHHHHHCCCCCCchh-hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012           9 VPYEDHKPIAIAIQIG--DPQIVKELQNHGAQIDKEI-YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY   85 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g--~~~~~~~Ll~~g~~~~~~~-~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~   85 (271)
                      .+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||    ||+|+..+                    ..+.
T Consensus        47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~Tp----Lh~a~~~~--------------------~~~~  102 (209)
T PHA02859         47 CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSA----LHHYLSFN--------------------KNVE  102 (209)
T ss_pred             cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCH----HHHHHHhC--------------------cccc
Confidence            5778999999999864  8999999999999999987 479999    66654321                    0123


Q ss_pred             HH-HHHHHhcCCCCccCCCCCCcHHHHHHHh--CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012          86 DE-VKKNIEDGACINVSSERCGSALIYAAWK--GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG  162 (271)
Q Consensus        86 ~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g  162 (271)
                      .+ +++|+++|++++.++..|.||||+|+..  ++.+++++|++.|++++..|..|.||||.++...++.+++++|++.|
T Consensus       103 ~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~G  182 (209)
T PHA02859        103 PEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLG  182 (209)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcC
Confidence            45 7777888999999999999999998864  68999999999999999999999999997544338999999999999


Q ss_pred             CCccccCCCCCCCHHHHH
Q psy8012         163 AYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       163 ~~~~~~~~~~g~tpL~~A  180 (271)
                      ++++.++. .|+|||++|
T Consensus       183 adi~~~d~-~g~tpl~la  199 (209)
T PHA02859        183 IDINETNK-SGYNCYDLI  199 (209)
T ss_pred             CCCCCCCC-CCCCHHHHH
Confidence            99999998 999999999

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=3.3e-26  Score=210.33  Aligned_cols=169  Identities=15%  Similarity=0.108  Sum_probs=146.1

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      +..+.++.++||.||..|+.++++.|++.|++++..|..|.||    ||+|+..|+.++                     
T Consensus       519 ~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~Tp----Lh~Aa~~g~~~~---------------------  573 (823)
T PLN03192        519 EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTP----LHIAASKGYEDC---------------------  573 (823)
T ss_pred             ccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcChHHH---------------------
Confidence            3455667899999999999999999999999999999999999    555544444444                     


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012          87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN  166 (271)
Q Consensus        87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~  166 (271)
                       +++|+++|++++.+|..|.||||+|+..|+.++++.|++.+...+.  ..+.++||.|+.. ++.+++++|+++|+|+|
T Consensus       574 -v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~-g~~~~v~~Ll~~Gadin  649 (823)
T PLN03192        574 -VLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKR-NDLTAMKELLKQGLNVD  649 (823)
T ss_pred             -HHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHh-CCHHHHHHHHHCCCCCC
Confidence             5666667889999999999999999999999999999988765443  4567999999998 99999999999999999


Q ss_pred             ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcC
Q psy8012         167 VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANN  205 (271)
Q Consensus       167 ~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~  205 (271)
                      .+|. .|.||||+| ..|+.+++++|+++|++++..+..+
T Consensus       650 ~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        650 SEDH-QGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             CCCC-CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            9998 999999999 9999999999999999987554444

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=5e-26  Score=207.86  Aligned_cols=217  Identities=24%  Similarity=0.182  Sum_probs=172.2

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHHC--CCCCCchhhcccchHHHHHH-HHHHHHhHHHHHHHHHcCc------HHHHHHH
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQNH--GAQIDKEIYSKNKAAARIAH-SALELEERKAINDLLRLNL------DFLKNVR   81 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~~~~~l~-~A~~~~~~~~~~~L~~~g~------~~l~~a~   81 (271)
                      ..+...++.||+.|+.+.++.+++.  +.++|..|..|.||    || .|+..++.++++.|+.+|+      .+||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~----Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSA----LFVAAIENENLELTELLLNLSCRGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhH----HHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHH
Confidence            4567899999999999999999999  89999999999999    99 8889999999999998873      4599998


Q ss_pred             hcChH---H-HHHHHhcCCC------Cc----cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC------------
Q psy8012          82 SNKYD---E-VKKNIEDGAC------IN----VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS------------  135 (271)
Q Consensus        82 ~~~~~---~-~~~ll~~~~~------~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~------------  135 (271)
                      .....   . +..+...+..      .+    .....|.||||+|+..|+.++++.|+++|++++..+            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            84332   2 4444443322      11    123469999999999999999999999999988642            


Q ss_pred             --CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCC---------chHHHHHHhchhhHHHHhh
Q psy8012         136 --ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGA---------REVNTVLLYFIHEIFKLMA  203 (271)
Q Consensus       136 --~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~---------~~~~~~L~~~g~~~~~~~~  203 (271)
                        ..|.||||.|+.. ++.+++++|++.|+|++.++. .|+||||+| ..+.         ..+.+++++.+....    
T Consensus       171 ~~~~g~tpL~~Aa~~-~~~~iv~lLl~~gadin~~d~-~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~----  244 (743)
T TIGR00870       171 SFYHGESPLNAAACL-GSPSIVALLSEDPADILTADS-LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR----  244 (743)
T ss_pred             cccccccHHHHHHHh-CCHHHHHHHhcCCcchhhHhh-hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC----
Confidence              3589999999998 999999999999999999998 899999999 6541         223444444433321    


Q ss_pred             cCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         204 NNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                                           +         .....+++|.+|.||||+|++.|+.++++++-+
T Consensus       245 ---------------------~---------~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       245 ---------------------D---------SKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             ---------------------C---------hHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                                 0         000124689999999999999999999998876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0508|consensus

Probab=99.93  E-value=6.8e-26  Score=184.19  Aligned_cols=154  Identities=35%  Similarity=0.454  Sum_probs=137.7

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-H
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-V   88 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~   88 (271)
                      ..+|.+||..|+..|++++|+.|+.+|+++|..+..+.||                           |..||.-|+.+ +
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStP---------------------------LraACfDG~leiv  133 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTP---------------------------LRAACFDGHLEIV  133 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCcc---------------------------HHHHHhcchhHHH
Confidence            5679999999999999999999999999999988889999                           55666666666 6


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~  168 (271)
                      |+|+++|++++..+..|.|+||+||..|+.+++++|++.|+|+|.++..|+|+||.++.. |+.+++++|+++|+.+.. 
T Consensus       134 KyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEs-G~vdivq~Ll~~ga~i~~-  211 (615)
T KOG0508|consen  134 KYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAES-GSVDIVQLLLKHGAKIDV-  211 (615)
T ss_pred             HHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhc-ccHHHHHHHHhCCceeee-
Confidence            667777889999999999999999999999999999999999999999999999999998 999999999999998886 


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHh
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLY  193 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~  193 (271)
                      |. .|.|||..| ..|..+++++|+.
T Consensus       212 d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  212 DG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cC-CCCchHHHHhhhcchHHHHHHhc
Confidence            44 699999999 9999999999984

>KOG0502|consensus

Probab=99.93  E-value=9.5e-26  Score=166.40  Aligned_cols=210  Identities=23%  Similarity=0.208  Sum_probs=161.5

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCC-CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQ-IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      +..|.+.+-.+...|+-+++.......++ +...+.+|..+    ++.+.-.++.+.++..+..+...          +.
T Consensus        59 ~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~----~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~s  134 (296)
T KOG0502|consen   59 NALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSA----LLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLS  134 (296)
T ss_pred             HhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhh----hhhcCCCCCcceeeeeecccccCCccccccCChhh
Confidence            34455555556666666555555444332 22334446666    66666666666666666554332          44


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  157 (271)
                      ++..+.+.+ +..+.  ...+|..|+.|.|||++|+..|+++.|++|+..|++++.......++|.+|+.. |..+++++
T Consensus       135 lsVhql~L~~~~~~~--~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~g-gytdiV~l  211 (296)
T KOG0502|consen  135 LSVHQLHLDVVDLLV--NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRG-GYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHHh--hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcC-ChHHHHHH
Confidence            554444444 33222  346789999999999999999999999999999999999999999999999997 99999999


Q ss_pred             HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcc
Q psy8012         158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFS  236 (271)
Q Consensus       158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (271)
                      |++++.|+|..|. +|-|||-+| .-++.+|++.|+..|+++.                                     
T Consensus       212 LL~r~vdVNvyDw-NGgTpLlyAvrgnhvkcve~Ll~sGAd~t-------------------------------------  253 (296)
T KOG0502|consen  212 LLTREVDVNVYDW-NGGTPLLYAVRGNHVKCVESLLNSGADVT-------------------------------------  253 (296)
T ss_pred             HHhcCCCcceecc-CCCceeeeeecCChHHHHHHHHhcCCCcc-------------------------------------
Confidence            9999999999999 999999999 8899999999999999954                                     


Q ss_pred             cccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         237 LLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       237 ~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                          ..|..|++++++|+..|+..+-..++++
T Consensus       254 ----~e~dsGy~~mdlAValGyr~Vqqvie~h  281 (296)
T KOG0502|consen  254 ----QEDDSGYWIMDLAVALGYRIVQQVIEKH  281 (296)
T ss_pred             ----cccccCCcHHHHHHHhhhHHHHHHHHHH
Confidence                7889999999999999999776666664

>KOG0514|consensus

Probab=99.90  E-value=1.8e-23  Score=165.09  Aligned_cols=158  Identities=26%  Similarity=0.327  Sum_probs=136.8

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCC-CCCCchhhcccchHHHHHHHHHHH-----HhHHHHHHHHHcCcHHHHHHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHG-AQIDKEIYSKNKAAARIAHSALEL-----EERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g~t~~~~~l~~A~~~-----~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      ..|.+|.|+||||+.++|+++|+.||+.| ++++.++.-|+||    +.+|+..     .+..+                
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtp----iMLaALA~lk~~~d~~v----------------  322 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTP----VMLAALAKLKQPADRTV----------------  322 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccH----HHHHHHHhhcchhhHHH----------------
Confidence            45889999999999999999999999998 6899999999999    8877553     22333                


Q ss_pred             hcChHHHHHHHhcCCCCccC-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          82 SNKYDEVKKNIEDGACINVS-SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        82 ~~~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                            |..|++.| ++|.+ ...|+|+|++|+..|..++++.|+..|+|+|.+|.+|.|+|+.|+.. |+.+++++|+.
T Consensus       323 ------V~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EH-GhkEivklLLA  394 (452)
T KOG0514|consen  323 ------VERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEH-GHKEIVKLLLA  394 (452)
T ss_pred             ------HHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhh-ChHHHHHHHhc
Confidence                  44444443 45554 46899999999999999999999999999999999999999999998 99999999996


Q ss_pred             C-CCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         161 H-GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       161 ~-g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      . ++|+...|. .|.|+|.+| ..|+.+|.-+|..+
T Consensus       395 ~p~cd~sLtD~-DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  395 VPSCDISLTDV-DGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cCcccceeecC-CCchhhhhHHhcCchHHHHHHHHH
Confidence            5 889999998 999999999 99999998777655

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=2.2e-22  Score=185.19  Aligned_cols=121  Identities=22%  Similarity=0.198  Sum_probs=109.8

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..|+.+ ++.|++.|+++|..|..|.||||+|+..|+.++++.|++.|++++..|..|+||||+|+.. ++.+++
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv  607 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIF  607 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHH
Confidence            77777788888 8888899999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~  201 (271)
                      ++|++.++..+.  . .+.++||.| ..|+.+++++|+++|++++..
T Consensus       608 ~~L~~~~~~~~~--~-~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~  651 (823)
T PLN03192        608 RILYHFASISDP--H-AAGDLLCTAAKRNDLTAMKELLKQGLNVDSE  651 (823)
T ss_pred             HHHHhcCcccCc--c-cCchHHHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence            999988776553  2 577999999 999999999999999997643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=2.5e-22  Score=150.18  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=104.7

Q ss_pred             CCCCCChHHHHHHhCCH----HHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012          10 PYEDHKPIAIAIQIGDP----QIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY   85 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~   85 (271)
                      +.++.++||.||+.|+.    +++++|++.|.+++.++..|.||    ||+|+..++.+.+                   
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~----Lh~Aa~~g~~~~~-------------------   73 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQC----THMVAWYDRANAV-------------------   73 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcH----HHHHHHhCccCHH-------------------
Confidence            45677888888888887    55566777788888888888888    6666665544332                   


Q ss_pred             HH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012          86 DE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG  162 (271)
Q Consensus        86 ~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g  162 (271)
                       . +++|+..|++++.++ ..|.||||+|+..++.+++++|++ .|++++..+..|.||||+|+.. ++.+++++|+++|
T Consensus        74 -~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~-~~~~iv~~Ll~~g  151 (166)
T PHA02743         74 -MKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM-RDRRMMEILRANG  151 (166)
T ss_pred             -HHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc-CCHHHHHHHHHcC
Confidence             2 455666777788777 478888888888888888888884 6888888888888888888887 8888888888888


Q ss_pred             CCccccCCCCCC
Q psy8012         163 AYYNVVDGKTGK  174 (271)
Q Consensus       163 ~~~~~~~~~~g~  174 (271)
                      ++++.++. .|.
T Consensus       152 a~~~~~~~-~~~  162 (166)
T PHA02743        152 AVCDDPLS-IGL  162 (166)
T ss_pred             CCCCCccc-CCc
Confidence            88887776 453

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=151.97  Aligned_cols=145  Identities=16%  Similarity=0.125  Sum_probs=122.7

Q ss_pred             CCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHH
Q psy8012          35 HGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAW  114 (271)
Q Consensus        35 ~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~  114 (271)
                      +|++++..+..+.++    +|.|+..|+.+.+..+                  +++|++.+..++..|..|.||||+|+.
T Consensus         9 ~~~~~~~~~~~~~~~----l~~a~~~g~~~~l~~~------------------~~~l~~~g~~~~~~d~~g~t~Lh~Aa~   66 (166)
T PHA02743          9 NNLGAVEIDEDEQNT----FLRICRTGNIYELMEV------------------APFISGDGHLLHRYDHHGRQCTHMVAW   66 (166)
T ss_pred             cchHHhhhccCCCcH----HHHHHHcCCHHHHHHH------------------HHHHhhcchhhhccCCCCCcHHHHHHH
Confidence            567777778888889    7777777666443322                  445667778888889999999999999


Q ss_pred             hCCHHH---HHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHHHHHHHh-CCCCccccCCCCCCCHHHHH-hcCCchHH
Q psy8012         115 KGYEEI---VDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHA-GKGAREVN  188 (271)
Q Consensus       115 ~~~~~~---~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A-~~~~~~~~  188 (271)
                      .|..+.   +++|++.|++++..+ ..|.||||+|+.. ++.+++++|++ .|++++.++. .|.||||+| ..++.+++
T Consensus        67 ~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~-g~~~iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         67 YDRANAVMKIELLVNMGADINARELGTGNTLLHIAAST-KNYELAEWLCRQLGVNLGAINY-QHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             hCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh-CCHHHHHHHHhccCCCccCcCC-CCCCHHHHHHHcCCHHHH
Confidence            987654   799999999999998 5899999999998 99999999995 8999999998 999999999 99999999


Q ss_pred             HHHHhchhhHHHHhh
Q psy8012         189 TVLLYFIHEIFKLMA  203 (271)
Q Consensus       189 ~~L~~~g~~~~~~~~  203 (271)
                      ++|+++|++++....
T Consensus       145 ~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        145 EILRANGAVCDDPLS  159 (166)
T ss_pred             HHHHHcCCCCCCccc
Confidence            999999999875443

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=151.21  Aligned_cols=128  Identities=16%  Similarity=0.168  Sum_probs=101.8

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHH------CCCCccccCCCCCcHHHHHHHhCCC----HHHHHHHHhCCCCcccc
Q psy8012          99 NVSSERCGSALIYAAWKGYEEIVDLLLD------NGADVNFKSATGFTALHMACRFHDD----DSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        99 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~------~~~~~~~~~~~~~t~l~~a~~~~~~----~~~~~~Ll~~g~~~~~~  168 (271)
                      +.++..|.||||+|+..|+.++++.|+.      .|++++..|..|+||||+|+.. ++    .+++++|++.|++++.+
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCC
Confidence            4466778888888888888888887753      3567788888888888888887 76    47788888888888887


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCC
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAG  246 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g  246 (271)
                      +...|+||||+| ..++.+++++|+. .|+++                                         +.+|..|
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-----------------------------------------~~~n~~g  132 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-----------------------------------------HFCNADN  132 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-----------------------------------------CcCCCCC
Confidence            732688888888 8888888888886 47664                                         3678888


Q ss_pred             chHHHHHHHhCCCcHHHHHHHH
Q psy8012         247 ETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       247 ~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      .||||+|+..++.+++++|.+-
T Consensus       133 ~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741        133 KSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHH
Confidence            8888888888888888888763

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=1.1e-21  Score=179.49  Aligned_cols=179  Identities=21%  Similarity=0.130  Sum_probs=149.8

Q ss_pred             CCCCCCChHH-HHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHH---HHhHHHHHHHHHc------------
Q psy8012           9 VPYEDHKPIA-IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALE---LEERKAINDLLRL------------   72 (271)
Q Consensus         9 ~~~~g~t~L~-~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~---~~~~~~~~~L~~~------------   72 (271)
                      .|..|.|||| .|+..++.++++.|+++|.    .+..|.||    ||.|+.   .+...++..+...            
T Consensus        48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~----Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~  119 (743)
T TIGR00870        48 PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTL----LHAISLEYVDAVEAILLHLLAAFRKSGPLELAND  119 (743)
T ss_pred             cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHH----HHHHHhccHHHHHHHHHHHhhcccccCchhhhcc
Confidence            5788999999 8888899999999999987    56689999    999998   3344555555443            


Q ss_pred             --------CcHHHHHHHhcChHH-HHHHHhcCCCCccCC--------------CCCCcHHHHHHHhCCHHHHHHHHHCCC
Q psy8012          73 --------NLDFLKNVRSNKYDE-VKKNIEDGACINVSS--------------ERCGSALIYAAWKGYEEIVDLLLDNGA  129 (271)
Q Consensus        73 --------g~~~l~~a~~~~~~~-~~~ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~  129 (271)
                              |.++||+|+..++.+ +++|+++|++++.++              ..|.||||.|+..|+.++++.|++.|+
T Consensus       120 ~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence                    345699999999999 999999999998653              258899999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHhCC---------CHHHHHHHHhCCCCc-------cccCCCCCCCHHHHH-hcCCchHHHHHH
Q psy8012         130 DVNFKSATGFTALHMACRFHD---------DDSIVRKLLRHGAYY-------NVVDGKTGKTPLLHA-GKGAREVNTVLL  192 (271)
Q Consensus       130 ~~~~~~~~~~t~l~~a~~~~~---------~~~~~~~Ll~~g~~~-------~~~~~~~g~tpL~~A-~~~~~~~~~~L~  192 (271)
                      +++..|..|+||||+|+.. +         ...+.+++++.++..       +..|. .|.||||.| ..|+.+++++|+
T Consensus       200 din~~d~~g~T~Lh~A~~~-~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~-~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       200 DILTADSLGNTLLHLLVME-NEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH-QGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             chhhHhhhhhHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC-CCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999987 5         234556666665544       56677 899999999 999999999999


Q ss_pred             hchhh
Q psy8012         193 YFIHE  197 (271)
Q Consensus       193 ~~g~~  197 (271)
                      +.+..
T Consensus       278 ~~~~~  282 (743)
T TIGR00870       278 AIKYK  282 (743)
T ss_pred             HHHHh
Confidence            86544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.88  E-value=3e-22  Score=148.02  Aligned_cols=187  Identities=21%  Similarity=0.134  Sum_probs=171.8

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHc--------CcHHH
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRL--------NLDFL   77 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~--------g~~~l   77 (271)
                      ...++.+|-+.++.|+-.++...++.++.+|...|..+..+.+|    +.+++...+.+.+-.+...        |..+|
T Consensus        89 ~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~----~slsVhql~L~~~~~~~~n~VN~~De~GfTpL  164 (296)
T KOG0502|consen   89 IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSP----LSLSVHQLHLDVVDLLVNNKVNACDEFGFTPL  164 (296)
T ss_pred             CCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCCh----hhHHHHHHHHHHHHHHhhccccCccccCchHh
Confidence            34556779999999999999999999999999999888899999    9999999888888777654        56679


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      .+|+..|+.+ +++|+..|++++...+...++|.+|++.|..++|+.|++++.++|.-|.+|.|||.+|++. ++..+++
T Consensus       165 iWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrg-nhvkcve  243 (296)
T KOG0502|consen  165 IWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRG-NHVKCVE  243 (296)
T ss_pred             HHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecC-ChHHHHH
Confidence            9999999999 9999999999999999999999999999999999999999999999999999999999997 9999999


Q ss_pred             HHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         157 KLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       157 ~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      .|++.|+|++..++ .|.+++..| ..|+. +++..++.-+...
T Consensus       244 ~Ll~sGAd~t~e~d-sGy~~mdlAValGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  244 SLLNSGADVTQEDD-SGYWIMDLAVALGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             HHHhcCCCcccccc-cCCcHHHHHHHhhhH-HHHHHHHHHHHHH
Confidence            99999999999999 999999999 88887 8888888877654

>KOG0507|consensus

Probab=99.88  E-value=3.9e-22  Score=170.67  Aligned_cols=185  Identities=21%  Similarity=0.091  Sum_probs=165.0

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L   77 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l   77 (271)
                      ..|.+|.|.||.||-+|+.++++.|++..+-++..+..|.+|    ||+|+..|+.++++.++.++..+          |
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~p----lhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILP----LHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL  119 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcce----EEehhhcCcchHHHHHHhcccCCCcccccCcCcc
Confidence            447899999999999999999999999999888888899999    99999999999999999987433          9


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--------ccccCCCCCcHHHHHHHh
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD--------VNFKSATGFTALHMACRF  148 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--------~~~~~~~~~t~l~~a~~~  148 (271)
                      |.++..++.+ +.+|+++|+++-.++..+.|++-+|++.|..++++.|++....        -...+..+.+|+|.|+++
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN  199 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence            9999999999 9999999999999999999999999999999999999876211        122345678899999998


Q ss_pred             CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         149 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       149 ~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                       ++.++++.|++.|.|+|....  .-|+||.| ..|..+++.+|++.|.+..
T Consensus       200 -gh~~~~~~ll~ag~din~~t~--~gtalheaalcgk~evvr~ll~~gin~h  248 (854)
T KOG0507|consen  200 -GHVECMQALLEAGFDINYTTE--DGTALHEAALCGKAEVVRFLLEIGINTH  248 (854)
T ss_pred             -chHHHHHHHHhcCCCcccccc--cchhhhhHhhcCcchhhhHHHhhccccc
Confidence             999999999999999999885  56999999 9999999999999998865

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=146.34  Aligned_cols=137  Identities=21%  Similarity=0.198  Sum_probs=117.3

Q ss_pred             CchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCC--
Q psy8012          40 DKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGY--  117 (271)
Q Consensus        40 ~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~--  117 (271)
                      +.++..|.||    ||+|+..|+.++++.|+....                -...|++++.+|..|.||||+|+..|+  
T Consensus        15 ~~~~~~g~t~----Lh~Aa~~g~~~~v~~l~~~~~----------------~~~~ga~in~~d~~g~T~Lh~A~~~g~~~   74 (169)
T PHA02741         15 AEKNSEGENF----FHEAARCGCFDIIARFTPFIR----------------GDCHAAALNATDDAGQMCIHIAAEKHEAQ   74 (169)
T ss_pred             hccccCCCCH----HHHHHHcCCHHHHHHHHHHhc----------------cchhhhhhhccCCCCCcHHHHHHHcCChH
Confidence            4567789999    888888888888777654210                012456788899999999999999998  


Q ss_pred             --HHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCCHHHHHHHHh-CCCCccccCCCCCCCHHHHH-hcCCchHHHHHH
Q psy8012         118 --EEIVDLLLDNGADVNFKSA-TGFTALHMACRFHDDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL  192 (271)
Q Consensus       118 --~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~  192 (271)
                        .+++++|++.|++++..+. .|+||||+|+.. ++.+++++|++ .|++++..+. .|+||||+| ..++.+++++|+
T Consensus        75 ~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~-~~~~iv~~Ll~~~g~~~~~~n~-~g~tpL~~A~~~~~~~iv~~L~  152 (169)
T PHA02741         75 LAAEIIDHLIELGADINAQEMLEGDTALHLAAHR-RDHDLAEWLCCQPGIDLHFCNA-DNKSPFELAIDNEDVAMMQILR  152 (169)
T ss_pred             HHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCC-CCCCHHHHHHHCCCHHHHHHHH
Confidence              5899999999999999885 899999999998 99999999997 5999999998 999999999 999999999999


Q ss_pred             hchhhH
Q psy8012         193 YFIHEI  198 (271)
Q Consensus       193 ~~g~~~  198 (271)
                      ++++..
T Consensus       153 ~~~~~~  158 (169)
T PHA02741        153 EIVATS  158 (169)
T ss_pred             HHHHHh
Confidence            987664

>KOG0505|consensus

Probab=99.87  E-value=1.1e-21  Score=162.20  Aligned_cols=181  Identities=23%  Similarity=0.274  Sum_probs=155.4

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ...+.+|.|+||.||...+.+||++|++.|++++..|..|+||    +|.|+..|+..++++|+.+|+++          
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtP----lhaaascg~~~i~~~li~~gA~~~avNsdg~~P  142 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTP----LHAAASCGYLNIVEYLIQHGANLLAVNSDGNMP  142 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCc----chhhcccccHHHHHHHHHhhhhhhhccCCCCCc
Confidence            4457899999999999999999999999999999999999999    99999999999999999999987          


Q ss_pred             ----------------------HHHHHh----cChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCC
Q psy8012          77 ----------------------LKNVRS----NKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA  129 (271)
Q Consensus        77 ----------------------l~~a~~----~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  129 (271)
                                            ..-++.    .-... +..++..|...+..+..|.|.||.|+..|..++.+.|++.|.
T Consensus       143 ~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~  222 (527)
T KOG0505|consen  143 YDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGY  222 (527)
T ss_pred             cccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhcc
Confidence                                  001111    11123 666677888888888889999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       130 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      +++..|.+||||||.|+.. +..+++++|+++|++++.... .|.||+-.| ... ....++..++
T Consensus       223 ~~~~~D~dgWtPlHAAA~W-g~~~~~elL~~~ga~~d~~t~-~g~~p~dv~dee~-~~l~eLe~k~  285 (527)
T KOG0505|consen  223 SVNIKDYDGWTPLHAAAHW-GQEDACELLVEHGADMDAKTK-MGETPLDVADEEE-LYLLELELKQ  285 (527)
T ss_pred             CcccccccCCCcccHHHHh-hhHhHHHHHHHhhcccchhhh-cCCCCccchhhhh-HHHHHHHHHH
Confidence            9999999999999999999 999999999999999999998 899999988 321 2444444444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=7e-21  Score=153.19  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=123.1

Q ss_pred             CCCCCC-hHHHHHHhCCHHHHHHHHHCCCCCCchh----hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012          10 PYEDHK-PIAIAIQIGDPQIVKELQNHGAQIDKEI----YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK   84 (271)
Q Consensus        10 ~~~g~t-~L~~A~~~g~~~~~~~Ll~~g~~~~~~~----~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~   84 (271)
                      |..|.| +||.|++.|+.+++++|+++|++++.++    ..|.||    ||+|+..++.++                   
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~Tp----Lh~Aa~~~~~ei-------------------   85 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNP----LIYAIDCDNDDA-------------------   85 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCH----HHHHHHcCCHHH-------------------
Confidence            555655 5777778899999999999999999874    589999    655555555444                   


Q ss_pred             hHHHHHHHhcCCCCccC-CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCC
Q psy8012          85 YDEVKKNIEDGACINVS-SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA  163 (271)
Q Consensus        85 ~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~  163 (271)
                         +++|+++|++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++..+.  |.
T Consensus        86 ---vklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~-~~~~~~~~~~--~~  159 (300)
T PHA02884         86 ---AKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI-CNNFLAFMIC--DN  159 (300)
T ss_pred             ---HHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-CChhHHHHhc--CC
Confidence               55556678889986 46799999999999999999999999999999999999999999997 8877765554  32


Q ss_pred             CccccCCCCCCCHHHHHhcCCchHHHHHHhchhh
Q psy8012         164 YYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHE  197 (271)
Q Consensus       164 ~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~~g~~  197 (271)
                      .   .+. .+.+|++++  ++.+++++|+.+++-
T Consensus       160 ~---~~~-~~~~~~~~~--~n~ei~~~Lish~vl  187 (300)
T PHA02884        160 E---ISN-FYKHPKKIL--INFDILKILVSHFIL  187 (300)
T ss_pred             c---ccc-cccChhhhh--ccHHHHHHHHHHHHH
Confidence            2   233 677888875  468999999999983

>KOG4369|consensus

Probab=99.87  E-value=6e-22  Score=175.23  Aligned_cols=258  Identities=21%  Similarity=0.168  Sum_probs=207.5

Q ss_pred             CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--------
Q psy8012           5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--------   76 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--------   76 (271)
                      +++-...+-.|+|-.||..|+.|.++.|+.+|+++..+|+.|.+|    |-+|+-.|+..+|+.|+++.+++        
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~p----lImaatagh~tvV~~llk~ha~veaQsdrtk  824 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVP----LIMAATAGHITVVQDLLKAHADVEAQSDRTK  824 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchh----hhhhcccCchHHHHHHHhhhhhhhhhccccc
Confidence            345556677899999999999999999999999999999999999    99999999999999999998887        


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC--CCCCcHHHHHHHhCC
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS--ATGFTALHMACRFHD  150 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--~~~~t~l~~a~~~~~  150 (271)
                         |.+||..+..+ +++||..|++-..++-...|||.+|...|..++++.|+..|.+++.+.  ..|-+||..|... +
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmn-g  903 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMN-G  903 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhc-c
Confidence               88899999988 999999888877777777889999888888899999999888888764  5678888888887 8


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhcc
Q psy8012         151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGT  224 (271)
Q Consensus       151 ~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~  224 (271)
                      +...+..|++.|.|+|..-..+.+|+|-+| -.|+.+++.+|+.+.+++.-+.+.+-++.+     .+++.=..|+..|+
T Consensus       904 h~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~ga  983 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGA  983 (2131)
T ss_pred             ccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccc
Confidence            888888888888888876544677888888 778888888888887777655555444433     45666677777777


Q ss_pred             CCCCCCCCCCc----------------cc------ccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         225 KEFGPGDYNNF----------------SL------LKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       225 ~~~~~~~~~~~----------------~~------~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      +-..-.-..+|                +.      -..++|++|.|+|.+|+.-|....+++|-+
T Consensus       984 d~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen  984 DTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             ccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhh
Confidence            64322221111                01      146899999999999999999888887754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=7e-21  Score=153.20  Aligned_cols=144  Identities=22%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCC----CCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc-CCCCCcHHHHHHHhCC
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSS----ERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRFHD  150 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~  150 (271)
                      |+.|+..+..+ +++|++.|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|+.. +
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~-~  115 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH-G  115 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc-C
Confidence            56666666777 777888888998874    58999999999999999999999999999986 56899999999998 9


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccC
Q psy8012         151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK  225 (271)
Q Consensus       151 ~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  225 (271)
                      +.+++++|++.|++++.++. .|.||||+| ..++.+++..+...+.+...   ..+.......++++.|+.++.-
T Consensus       116 ~~eivklLL~~GAdin~kd~-~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~ei~~~Lish~vl  187 (300)
T PHA02884        116 CLKCLEILLSYGADINIQTN-DMVTPIELALMICNNFLAFMICDNEISNFY---KHPKKILINFDILKILVSHFIL  187 (300)
T ss_pred             CHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHhCChhHHHHhcCCcccccc---cChhhhhccHHHHHHHHHHHHH
Confidence            99999999999999999998 899999999 87888887666543321111   1111112346888888888763

>KOG0505|consensus

Probab=99.87  E-value=9.3e-22  Score=162.69  Aligned_cols=205  Identities=26%  Similarity=0.240  Sum_probs=171.0

Q ss_pred             hHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcCh
Q psy8012          16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKY   85 (271)
Q Consensus        16 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~   85 (271)
                      .+-.|+..|..+-+..|+..|++++..+.+|.|+    +|-||...+.+||.+|+++|+++          +|.|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTa----lhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTA----LHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchh----HHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccccc
Confidence            4667889999999999999999999999999999    99999999999999999999887          999999999


Q ss_pred             HH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHH--------------------------HHHHHHHCCCCccccCCCC
Q psy8012          86 DE-VKKNIEDGACINVSSERCGSALIYAAWKGYEE--------------------------IVDLLLDNGADVNFKSATG  138 (271)
Q Consensus        86 ~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~--------------------------~~~~Ll~~~~~~~~~~~~~  138 (271)
                      .. +++|+.+|+++-..+.+|..|.-.+...-..+                          -+.+.+..|...+..+..|
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG  198 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG  198 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence            99 99999999987777766666655543221111                          1122233677777787779


Q ss_pred             CcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHH
Q psy8012         139 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMK  217 (271)
Q Consensus       139 ~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  217 (271)
                      .|.||.|+.. |..++..+|+..|.+++.+|. .||||||.| .++..+++++|+++|++..                  
T Consensus       199 ~T~lHvAaa~-Gy~e~~~lLl~ag~~~~~~D~-dgWtPlHAAA~Wg~~~~~elL~~~ga~~d------------------  258 (527)
T KOG0505|consen  199 ATALHVAAAN-GYTEVAALLLQAGYSVNIKDY-DGWTPLHAAAHWGQEDACELLVEHGADMD------------------  258 (527)
T ss_pred             chHHHHHHhh-hHHHHHHHHHHhccCcccccc-cCCCcccHHHHhhhHhHHHHHHHhhcccc------------------
Confidence            9999999998 999999999999999999999 999999999 9999999999999999964                  


Q ss_pred             HHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         218 SLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                             .+...|.||+++|..--. +..+|.+|.
T Consensus       259 -----------------------~~t~~g~~p~dv~dee~~-~l~eLe~k~  285 (527)
T KOG0505|consen  259 -----------------------AKTKMGETPLDVADEEEL-YLLELELKQ  285 (527)
T ss_pred             -----------------------hhhhcCCCCccchhhhhH-HHHHHHHHH
Confidence                                   678888999988876543 555555553

>KOG0514|consensus

Probab=99.86  E-value=1.2e-21  Score=154.78  Aligned_cols=150  Identities=27%  Similarity=0.294  Sum_probs=123.9

Q ss_pred             HHHHHhcChHH-HHHHHhcC-CCCccCCCCCCcHHHHHHHh-----CCHHHHHHHHHCCCCcccc-CCCCCcHHHHHHHh
Q psy8012          77 LKNVRSNKYDE-VKKNIEDG-ACINVSSERCGSALIYAAWK-----GYEEIVDLLLDNGADVNFK-SATGFTALHMACRF  148 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~-~~~~~~~~~g~t~l~~a~~~-----~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~  148 (271)
                      |||++.+.+++ |+.||+.| ++++.++..|.||+++++..     .+.++|..|+..| ++|.+ ...|+|+|++|+..
T Consensus       272 LHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSH  350 (452)
T KOG0514|consen  272 LHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSH  350 (452)
T ss_pred             eeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhhhhc
Confidence            55555555555 55555554 67999999999999998865     4678888888775 56655 46899999999998


Q ss_pred             CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCC
Q psy8012         149 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEF  227 (271)
Q Consensus       149 ~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  227 (271)
                       |..++++.|+..|+|+|.+|. .|.|+|++| ..|+.|++++|+......                             
T Consensus       351 -Gr~d~vk~LLacgAdVNiQDd-DGSTALMCA~EHGhkEivklLLA~p~cd-----------------------------  399 (452)
T KOG0514|consen  351 -GRVDMVKALLACGADVNIQDD-DGSTALMCAAEHGHKEIVKLLLAVPSCD-----------------------------  399 (452)
T ss_pred             -CcHHHHHHHHHccCCCccccC-CccHHHhhhhhhChHHHHHHHhccCccc-----------------------------
Confidence             999999999999999999999 999999999 999999999999774321                             


Q ss_pred             CCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         228 GPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       228 ~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                                 +..+|.+|-|+|.+|-+.|+.+|.-+|=.+.
T Consensus       400 -----------~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  400 -----------ISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             -----------ceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence                       4479999999999999999999988775543

>KOG0512|consensus

Probab=99.86  E-value=6.9e-21  Score=135.73  Aligned_cols=140  Identities=30%  Similarity=0.374  Sum_probs=117.9

Q ss_pred             HHHHHhcChHH-HHHHHhcCCC-CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                      +.+|+..+... |+.|++..++ +|.+|.++.||||.|+.+|+.++++.|+..|++++.....||||||.||.. ++.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW-nN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW-NNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc-cchhH
Confidence            45556666666 7777766665 899999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH--hcCCchHHHHHHhc-hhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVLLYF-IHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGD  231 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A--~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  231 (271)
                      +-+|+.+|+|+|+... ...||||.|  .++....+++|+.- +..                                  
T Consensus       146 a~~LLqhgaDVnA~t~-g~ltpLhlaa~~rn~r~t~~~Ll~dryi~----------------------------------  190 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTK-GLLTPLHLAAGNRNSRDTLELLLHDRYIH----------------------------------  190 (228)
T ss_pred             HHHHHhccCccccccc-ccchhhHHhhcccchHHHHHHHhhccccC----------------------------------
Confidence            9999999999999998 789999999  55555666666532 222                                  


Q ss_pred             CCCcccccccccCCCchHHHHHHHhCCC
Q psy8012         232 YNNFSLLKVTKNDAGETILDIAKKRGFP  259 (271)
Q Consensus       232 ~~~~~~~~~~~d~~g~tpl~~A~~~~~~  259 (271)
                             +-.++..+.||+++|.+.+-.
T Consensus       191 -------pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  191 -------PGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             -------hhhhcCccchHHHHHHHhhhh
Confidence                   336889999999999988654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=139.40  Aligned_cols=131  Identities=18%  Similarity=0.143  Sum_probs=74.3

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCC--C-----CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGA--Q-----IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~--~-----~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      .|.+|.||||+||+.|+..  ..+..++.  +     +...+..|.||    ||+|+..++.+.+               
T Consensus        13 ~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~----Lh~a~~~~~~~~~---------------   71 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQC----VHIVSNPDKADPQ---------------   71 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEE----EEeecccCchhHH---------------
Confidence            4667888888888888742  22222221  1     12335566666    4444444332211               


Q ss_pred             hcChHH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCCHHHHHHH
Q psy8012          82 SNKYDE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRFHDDDSIVRKL  158 (271)
Q Consensus        82 ~~~~~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~L  158 (271)
                           + +++|++.|++++.++ ..|.||||+|+..++.+++++|++ .|++++..+..|+||||+|+.. ++.+++++|
T Consensus        72 -----e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~-~~~~i~~~L  145 (154)
T PHA02736         72 -----EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER-HDAKMMNIL  145 (154)
T ss_pred             -----HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc-CCHHHHHHH
Confidence                 2 344555556666655 356666666666666666666665 3566666666666666666665 666666666


Q ss_pred             HhCCCCcc
Q psy8012         159 LRHGAYYN  166 (271)
Q Consensus       159 l~~g~~~~  166 (271)
                      +++|++.+
T Consensus       146 l~~ga~~~  153 (154)
T PHA02736        146 RAKGAQCK  153 (154)
T ss_pred             HHcCCCCC
Confidence            66665543

>KOG0507|consensus

Probab=99.84  E-value=1.4e-20  Score=161.30  Aligned_cols=223  Identities=23%  Similarity=0.165  Sum_probs=191.8

Q ss_pred             ChHHHHHHhCCHHHHHHHHHCC-------------CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH------
Q psy8012          15 KPIAIAIQIGDPQIVKELQNHG-------------AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD------   75 (271)
Q Consensus        15 t~L~~A~~~g~~~~~~~Ll~~g-------------~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~------   75 (271)
                      +=|-.|++.|+++.+..|++..             ...+..|.+|.|+    ||.|+.+|+.++++.|+++.+-      
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTa----lhha~Lng~~~is~llle~ea~ldl~d~   80 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTL----LHHAVLNGQNQISKLLLDYEALLDLCDT   80 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhH----HHHHHhcCchHHHHHHhcchhhhhhhhc
Confidence            3466799999999999999851             2456678899999    9999999999999999998543      


Q ss_pred             ----HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012          76 ----FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD  150 (271)
Q Consensus        76 ----~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  150 (271)
                          +||+|++.|+.+ +++++..+..+|.....|.||||.|+..|+.+.+.+|+.+++++-..+..+.|++-.|++. |
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf-g  159 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF-G  159 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh-h
Confidence                399999999999 9999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             CHHHHHHHHhCCCCc--------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCC----cccccchHHHH
Q psy8012         151 DDSIVRKLLRHGAYY--------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANND----TTILDRLDEMK  217 (271)
Q Consensus       151 ~~~~~~~Ll~~g~~~--------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~----~~~~~~~~~~~  217 (271)
                      ..++++.|++...+.        ..++- .+-+|||.| .+|+.++++.|+..|.+++.....+-    +..-...+++.
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~-~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr  238 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPF-PAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVR  238 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCC-CCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhh
Confidence            999999999763222        12223 578999999 99999999999999999985544333    22336789999


Q ss_pred             HHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHh
Q psy8012         218 SLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKR  256 (271)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~  256 (271)
                      .|+..|.+             ..++|..|.|+|++-...
T Consensus       239 ~ll~~gin-------------~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  239 FLLEIGIN-------------THIKNQHGQTALDIIIDL  264 (854)
T ss_pred             HHHhhccc-------------cccccccchHHHHHHHhc
Confidence            99999988             668999999999997654

>KOG0512|consensus

Probab=99.82  E-value=1.8e-19  Score=128.51  Aligned_cols=152  Identities=18%  Similarity=0.132  Sum_probs=125.1

Q ss_pred             hHHHHHHhCCHHHHHHHHHCCCC-CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhc
Q psy8012          16 PIAIAIQIGDPQIVKELQNHGAQ-IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIED   94 (271)
Q Consensus        16 ~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~   94 (271)
                      .+-+|+..+....|+.||+..++ +|.+|.+|+||    ||-|+.+|+.+|                      ++.|+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTp----LHRAaYn~h~di----------------------v~~ll~~  119 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTP----LHRAAYNGHLDI----------------------VHELLLS  119 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccH----HHHHHhcCchHH----------------------HHHHHHc
Confidence            46789999999999999999876 89999999999    555555555544                      5555667


Q ss_pred             CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHH-hCCCCccccCCCCC
Q psy8012          95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL-RHGAYYNVVDGKTG  173 (271)
Q Consensus        95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll-~~g~~~~~~~~~~g  173 (271)
                      |++.+.+...|+||||.||.-.+.+++..|+++|+|++......+||||+|+..++....+.+|+ ..++++-..+. .+
T Consensus       120 gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn-~e  198 (228)
T KOG0512|consen  120 GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN-LE  198 (228)
T ss_pred             cCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC-cc
Confidence            88899999999999999999999999999999999999999999999999998756666777776 66888888888 89


Q ss_pred             CCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         174 KTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       174 ~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      .||+.+| ..+   +..+|.+.+-+
T Consensus       199 eta~~iARRT~---~s~~lfe~~e~  220 (228)
T KOG0512|consen  199 ETAFDIARRTS---MSHYLFEIVEG  220 (228)
T ss_pred             chHHHHHHHhh---hhHHHHHHHHH
Confidence            9999999 443   44455554433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=8.4e-20  Score=135.24  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=108.3

Q ss_pred             CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCH
Q psy8012          39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE  118 (271)
Q Consensus        39 ~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~  118 (271)
                      ++..+..|.||    ||+|+..|+.  +..+...+..      .    +     ..+..++..+..|.||||+|+..|+.
T Consensus        10 ~~~~d~~g~tp----Lh~A~~~g~~--~~l~~~~~~~------~----~-----~~~~~~~~~d~~g~t~Lh~a~~~~~~   68 (154)
T PHA02736         10 ASEPDIEGENI----LHYLCRNGGV--TDLLAFKNAI------S----D-----ENRYLVLEYNRHGKQCVHIVSNPDKA   68 (154)
T ss_pred             HHhcCCCCCCH----HHHHHHhCCH--HHHHHHHHHh------c----c-----hhHHHHHHhcCCCCEEEEeecccCch
Confidence            34557789999    9999888862  2222211100      0    0     00111234577899999999999986


Q ss_pred             ---HHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHHHHHHHh-CCCCccccCCCCCCCHHHHH-hcCCchHHHHHH
Q psy8012         119 ---EIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL  192 (271)
Q Consensus       119 ---~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~  192 (271)
                         +++++|++.|++++..+ ..|+||||+|+.. ++.+++++|++ .|++++.++. .|.||||+| ..++.+++++|+
T Consensus        69 ~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~-~~~~i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         69 DPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT-QNYELATWLCNQPGVNMEILNY-AFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             hHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHh-CCHHHHHHHHhCCCCCCccccC-CCCCHHHHHHHcCCHHHHHHHH
Confidence               46889999999999988 5899999999998 99999999997 5999999998 999999999 999999999999


Q ss_pred             hchhhH
Q psy8012         193 YFIHEI  198 (271)
Q Consensus       193 ~~g~~~  198 (271)
                      ++|++.
T Consensus       147 ~~ga~~  152 (154)
T PHA02736        147 AKGAQC  152 (154)
T ss_pred             HcCCCC
Confidence            999875

>KOG4369|consensus

Probab=99.78  E-value=5.2e-20  Score=163.19  Aligned_cols=239  Identities=21%  Similarity=0.188  Sum_probs=202.2

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCch-hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKE-IYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      .+|..|.+||-+|+-.|+..+|+.|+++-++++.+ |..+.|+    |.+||..|+.++++.|+.+|++-          
T Consensus       785 hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~----lSlacsggr~~vvelLl~~gankehrnvsDytP  860 (2131)
T KOG4369|consen  785 HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTM----LSLACSGGRTRVVELLLNAGANKEHRNVSDYTP  860 (2131)
T ss_pred             ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCce----EEEecCCCcchHHHHHHHhhccccccchhhcCc
Confidence            46788999999999999999999999999998865 5568999    99999999999999999998653          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSS--ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDD  152 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~  152 (271)
                      +.+|...+..+ ++.|+..|+.+|.+.  +.|..||++|...|+.+.++.|++.|.++|..- .+.+|+|-+|+-. +..
T Consensus       861 lsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq-gr~  939 (2131)
T KOG4369|consen  861 LSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ-GRP  939 (2131)
T ss_pred             hhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc-Ccc
Confidence            99999999999 999999998888774  568899999999999999999999999998764 4678999999988 999


Q ss_pred             HHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHh-hcCCcccc--------------------
Q psy8012         153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLM-ANNDTTIL--------------------  210 (271)
Q Consensus       153 ~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~-~~~~~~~~--------------------  210 (271)
                      +++.+|+.+.+++..+.. .|.|||+-+ ..|++++-++|+..|+|.+... .+...+.+                    
T Consensus       940 evv~lLLa~~anvehRak-tgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRAK-TGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred             hHHHHHHHHhhhhhhhcc-cCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCcc
Confidence            999999999999999988 899999988 9999999999999999875332 11111111                    


Q ss_pred             -------------------cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHH
Q psy8012         211 -------------------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELE  265 (271)
Q Consensus       211 -------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll  265 (271)
                                         .++.....|+..+++             ++..|....+++..|.++|++++|+++
T Consensus      1019 tv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad-------------~d~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1019 TVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD-------------ADQQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             ceecccCCCCcccchhccCCccccchHHhhcccC-------------hhhhhcccccccHHHHHhchhheeccc
Confidence                               124455555555555             788999999999999999999998865

>KOG3676|consensus

Probab=99.78  E-value=2.3e-18  Score=149.27  Aligned_cols=195  Identities=25%  Similarity=0.164  Sum_probs=155.8

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCC---------CCCCchhhcccchHHHHHHHHHH---HHhHHHHHHHHHcCcHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHG---------AQIDKEIYSKNKAAARIAHSALE---LEERKAINDLLRLNLDFLKN   79 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g---------~~~~~~~~~g~t~~~~~l~~A~~---~~~~~~~~~L~~~g~~~l~~   79 (271)
                      ..+.++..|...+..+....++..+         .+++.+...|+|.    ||.|..   .++.++++.|++.-+..   
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~----Lh~~lL~~~~~~n~la~~LL~~~p~l---  172 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETL----LHKALLNLSDGHNELARVLLEIFPKL---  172 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhH----HHHHHhcCchhHHHHHHHHHHHhHHH---
Confidence            3447888899999998888777655         5677777889999    999887   34457777776653211   


Q ss_pred             HHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc---------C--------------C
Q psy8012          80 VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK---------S--------------A  136 (271)
Q Consensus        80 a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~---------~--------------~  136 (271)
                                 ..+   ....-...|.||||+|+.+.+.++|+.|++.|+|++.+         |              .
T Consensus       173 -----------ind---~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y  238 (782)
T KOG3676|consen  173 -----------IND---IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFY  238 (782)
T ss_pred             -----------hhh---hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceee
Confidence                       000   01112347999999999999999999999999999852         1              2


Q ss_pred             CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHH
Q psy8012         137 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDE  215 (271)
Q Consensus       137 ~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~  215 (271)
                      .|..||.+|+.. ++.+++++|+++|+|++++|+ +|+|.||.. ..-..++..+++++|++..                
T Consensus       239 fGEyPLSfAAC~-nq~eivrlLl~~gAd~~aqDS-~GNTVLH~lVi~~~~~My~~~L~~ga~~l----------------  300 (782)
T KOG3676|consen  239 FGEYPLSFAACT-NQPEIVRLLLAHGADPNAQDS-NGNTVLHMLVIHFVTEMYDLALELGANAL----------------  300 (782)
T ss_pred             eccCchHHHHHc-CCHHHHHHHHhcCCCCCcccc-CCChHHHHHHHHHHHHHHHHHHhcCCCcc----------------
Confidence            467899999999 999999999999999999999 999999999 7777888888888887711                


Q ss_pred             HHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         216 MKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                             ..++|..|-|||-+|++-|..+|.+.+.+.
T Consensus       301 -----------------------~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  301 -----------------------EHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             -----------------------ccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence                                   237899999999999999999998888765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.3e-17  Score=118.80  Aligned_cols=122  Identities=38%  Similarity=0.460  Sum_probs=111.9

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH
Q psy8012         101 SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       101 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A  180 (271)
                      .+..|.||||+|+..++.+++++|++.+.+.+..+..|.+|+|.|+.. +..+++++|++.|++++..+. .|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNARDK-DGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCccccCC-CCCCHHHHH
Confidence            456799999999999999999999999998888899999999999998 999999999999999998887 899999999


Q ss_pred             -hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCC
Q psy8012         181 -GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFP  259 (271)
Q Consensus       181 -~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~  259 (271)
                       ..++.+++++|++++.++                                         +..|..|.||+++|...++.
T Consensus        81 ~~~~~~~~~~~L~~~~~~~-----------------------------------------~~~~~~~~~~l~~~~~~~~~  119 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV-----------------------------------------NARDKDGRTPLHLAAKNGHL  119 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC-----------------------------------------cccCCCCCCHHHHHHhcCCH
Confidence             999999999999988553                                         36789999999999999999


Q ss_pred             cHHHHH
Q psy8012         260 LLEELE  265 (271)
Q Consensus       260 ~~~~ll  265 (271)
                      +++++|
T Consensus       120 ~~~~~L  125 (126)
T cd00204         120 EVVKLL  125 (126)
T ss_pred             HHHHHh
Confidence            998876

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195|consensus

Probab=99.76  E-value=4.1e-19  Score=136.78  Aligned_cols=110  Identities=32%  Similarity=0.339  Sum_probs=93.7

Q ss_pred             HHHHH-hcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012          88 VKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN  166 (271)
Q Consensus        88 ~~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~  166 (271)
                      +++.+ +..-+.|.-|..|.+|||+|+..|+..+++.|+.+|+.+|..+....||||+|+.. |+.++++.|+++.+|+|
T Consensus        16 vrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvn   94 (448)
T KOG0195|consen   16 VRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVN   94 (448)
T ss_pred             EEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccc
Confidence            44444 33456777788899999999999999999999999999998888888999999988 99999999999999999


Q ss_pred             ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         167 VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       167 ~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      +.+. .|.|||||| -.|+..+++-|+..|+.++
T Consensus        95 avne-hgntplhyacfwgydqiaedli~~ga~v~  127 (448)
T KOG0195|consen   95 AVNE-HGNTPLHYACFWGYDQIAEDLISCGAAVN  127 (448)
T ss_pred             hhhc-cCCCchhhhhhhcHHHHHHHHHhccceee
Confidence            9887 899999999 8888888888888888754

>KOG0195|consensus

Probab=99.76  E-value=2.3e-18  Score=132.68  Aligned_cols=112  Identities=26%  Similarity=0.360  Sum_probs=98.3

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-   87 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-   87 (271)
                      .|..|.+|||+||+.|+..+++.|+.+|+.+|..+.-..||                           ||+|+.+|+.+ 
T Consensus        30 gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtp---------------------------lhlaaahghrdi   82 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTP---------------------------LHLAAAHGHRDI   82 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcc---------------------------hhhhhhcccHHH
Confidence            47789999999999999999999999999999999888999                           55555566666 


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR  147 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  147 (271)
                      ++.|+++.+++|..+..|+|||||||.-|...+++-|+..|+.++.++..|.||+..|--
T Consensus        83 vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            666677788999999999999999999999999999999999999999999999987653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=9.5e-18  Score=112.36  Aligned_cols=86  Identities=45%  Similarity=0.521  Sum_probs=41.1

Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      |.|+..++.+ +++|++.+.+++.    |.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.++++
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~   76 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAEN-GNLEIVK   76 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHT-THHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHc-CCHHHHH
Confidence            3444444444 4444444444333    44455555555555555555555555555555555555555554 5555555


Q ss_pred             HHHhCCCCcccc
Q psy8012         157 KLLRHGAYYNVV  168 (271)
Q Consensus       157 ~Ll~~g~~~~~~  168 (271)
                      +|+++|++++.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            555555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=5.6e-18  Score=113.50  Aligned_cols=86  Identities=40%  Similarity=0.471  Sum_probs=79.7

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchH
Q psy8012         109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREV  187 (271)
Q Consensus       109 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~  187 (271)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+.. ++.+++++|++.|++++.++. .|+||||+| ..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQDK-NGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-BST-TSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhcccccccCC-CCCCHHHHHHHcCCHHH
Confidence            7999999999999999999988776    88999999998 999999999999999999998 999999999 9999999


Q ss_pred             HHHHHhchhhHHH
Q psy8012         188 NTVLLYFIHEIFK  200 (271)
Q Consensus       188 ~~~L~~~g~~~~~  200 (271)
                      +++|+++|++++.
T Consensus        75 ~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   75 VKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHTTT-TTS
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999998763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=6e-17  Score=115.26  Aligned_cols=124  Identities=29%  Similarity=0.397  Sum_probs=90.3

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV   88 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~   88 (271)
                      .+.+|.||||+|++.|+.+++++|+++|.+.+..+..|.+|    +|+|+..++.+++++|++                 
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~----l~~a~~~~~~~~~~~ll~-----------------   61 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP----LHLAAKNGHLEIVKLLLE-----------------   61 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcH----HHHHHHcCCHHHHHHHHH-----------------
Confidence            35678899999999999999999999888877777778888    655555555544444433                 


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHH
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL  159 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll  159 (271)
                           .+..++..+..+.||+|+|+..++.+++++|++.+.+++..+..+.||+++|... ++.+++++|+
T Consensus        62 -----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~Ll  126 (126)
T cd00204          62 -----KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-GHLEVVKLLL  126 (126)
T ss_pred             -----cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc-CCHHHHHHhC
Confidence                 4445556666777777777777777777777777777777777777777777776 7777777663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.69  E-value=3.6e-16  Score=135.88  Aligned_cols=178  Identities=24%  Similarity=0.186  Sum_probs=141.7

Q ss_pred             CCCCCChHHHHHHh---CCHHHHHHHHHCCCC----CC-chhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012          10 PYEDHKPIAIAIQI---GDPQIVKELQNHGAQ----ID-KEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus        10 ~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~----~~-~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      -..|.|.||.|.-+   ++-++++.|++.-..    +- .....|.||    ||.|+.+.+.++|+.|++.|+++ |..|
T Consensus       140 Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSa----LHiAIv~~~~~~V~lLl~~gADV-~aRa  214 (782)
T KOG3676|consen  140 GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSA----LHIAIVNRDAELVRLLLAAGADV-HARA  214 (782)
T ss_pred             cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcch----HHHHHHhccHHHHHHHHHcCCch-hhHh
Confidence            45799999999974   445889999986432    22 223469999    99999999999999999999995 3333


Q ss_pred             hcChHH-HHH-HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHH
Q psy8012          82 SNKYDE-VKK-NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL  159 (271)
Q Consensus        82 ~~~~~~-~~~-ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll  159 (271)
                      .+.-.. -.. -.....++.-.-.-|..||..|+-.++.+++++|+++|+|++.+|..|+|.||..+.. ...++..+++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~-~~~~My~~~L  293 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIH-FVTEMYDLAL  293 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHH-HHHHHHHHHH
Confidence            333221 000 0112222222234689999999999999999999999999999999999999999998 8899999999


Q ss_pred             hCCCC--ccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         160 RHGAY--YNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       160 ~~g~~--~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      ++|++  ...++. .|-|||..| ..|..++.+.+++.
T Consensus       294 ~~ga~~l~~v~N~-qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  294 ELGANALEHVRNN-QGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hcCCCcccccccc-CCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999  888888 899999999 99999999999988

>KOG4214|consensus

Probab=99.61  E-value=5.7e-15  Score=94.47  Aligned_cols=101  Identities=25%  Similarity=0.261  Sum_probs=75.7

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      +.++...|..+ ++.....|.++|..- .|++|||+|+..|..+++++|+..|++++..|..|-|||..|+.. |+.+++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwE-GH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWE-GHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHH-hhHHHH
Confidence            45566666666 777777776666543 677888888888888888888888888888888888888888887 888888


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A  180 (271)
                      ++|++.|+|-..... .|.+.+..+
T Consensus        84 klLL~~GAdrt~~~P-dG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAP-DGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCC-CchhHHhhc
Confidence            888888888777776 676666554

>KOG4214|consensus

Probab=99.61  E-value=2.5e-15  Score=96.12  Aligned_cols=89  Identities=29%  Similarity=0.306  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCch
Q psy8012         108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGARE  186 (271)
Q Consensus       108 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~  186 (271)
                      -+.+++.+|..+-|+..+..|.++|..- .|++|||+|+.. |+.++++||+..|++++.+|+ .|-|||..| ..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~-GQl~ilefli~iGA~i~~kDK-ygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADY-GQLSILEFLISIGANIQDKDK-YGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhc-chHHHHHHHHHhccccCCccc-cCCcHHHHHHHHhhHH
Confidence            4678999999999999998887777544 899999999999 999999999999999999998 999999999 999999


Q ss_pred             HHHHHHhchhhHH
Q psy8012         187 VNTVLLYFIHEIF  199 (271)
Q Consensus       187 ~~~~L~~~g~~~~  199 (271)
                      |+++|++.|++-.
T Consensus        82 cVklLL~~GAdrt   94 (117)
T KOG4214|consen   82 CVKLLLQNGADRT   94 (117)
T ss_pred             HHHHHHHcCcccc
Confidence            9999999999843

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=6e-14  Score=110.30  Aligned_cols=134  Identities=31%  Similarity=0.353  Sum_probs=110.1

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY   85 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~   85 (271)
                      ....+..+.+++|.++..+..+++++++..|++++.++..|.||    +|+|+..++.                  ..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~----l~~a~~~~~~------------------~~~~  123 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTP----LHLAALNGNP------------------PEGN  123 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcH----HHHHHhcCCc------------------ccch
Confidence            34456668999999999999999999999999999999999999    7777776662                  1111


Q ss_pred             HH-HHHHHhcCC---CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhC
Q psy8012          86 DE-VKKNIEDGA---CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH  161 (271)
Q Consensus        86 ~~-~~~ll~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~  161 (271)
                      .+ ++.|++.|+   ..+.++..|.||+|+|+..|+.++++.|++.|++++..+..|.|+++.|+.. +..+++..+++.
T Consensus       124 ~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~l~~~  202 (235)
T COG0666         124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN-GRIELVKLLLDK  202 (235)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc-chHHHHHHHHhc
Confidence            44 555555566   5666688899999999999999999999999998888888899999999988 888888888886


Q ss_pred             C
Q psy8012         162 G  162 (271)
Q Consensus       162 g  162 (271)
                      +
T Consensus       203 ~  203 (235)
T COG0666         203 G  203 (235)
T ss_pred             C
Confidence            5

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=3.4e-14  Score=111.72  Aligned_cols=125  Identities=37%  Similarity=0.369  Sum_probs=91.8

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC-----HHHHHHHHhCCC---CccccCCC
Q psy8012         100 VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD-----DSIVRKLLRHGA---YYNVVDGK  171 (271)
Q Consensus       100 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~-----~~~~~~Ll~~g~---~~~~~~~~  171 (271)
                      ..+..+.++++.++..+..+++++++..|.+++..+..|.||+|+|+.. ++     .+++++|++.|+   ..+.++. 
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~~~-  145 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLRDE-  145 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCccccCC-
Confidence            3445567777777777777777777777777777777777888887776 77     777788887777   4444465 


Q ss_pred             CCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHH
Q psy8012         172 TGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETIL  250 (271)
Q Consensus       172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl  250 (271)
                      .|.||||+| ..++.+++++|++.|+++.                                         .++..|.|++
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-----------------------------------------~~~~~g~t~l  184 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPN-----------------------------------------SRNSYGVTAL  184 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCc-----------------------------------------ccccCCCcch
Confidence            777888877 7777777777777766643                                         5577777777


Q ss_pred             HHHHHhCCCcHHHHHHH
Q psy8012         251 DIAKKRGFPLLEELEKK  267 (271)
Q Consensus       251 ~~A~~~~~~~~~~ll~~  267 (271)
                      +.|+..++.++++.+.+
T Consensus       185 ~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         185 DPAAKNGRIELVKLLLD  201 (235)
T ss_pred             hhhcccchHHHHHHHHh
Confidence            77777777777777665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=2.8e-14  Score=85.70  Aligned_cols=54  Identities=28%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL   70 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~   70 (271)
                      |.||||+||+.|+.+++++|+++|++++.+|.+|.||    +|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~----lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTP----LHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--H----HHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHccCHHHHHHHC
Confidence            7899999999999999999999999999999999999    99999999999999986

...

>KOG0515|consensus

Probab=99.50  E-value=8.3e-14  Score=115.69  Aligned_cols=117  Identities=22%  Similarity=0.224  Sum_probs=99.3

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |.-|+..|..+ |+..+..-.++...+..|.|+||-|+-.|+.+||++|+++|+++|..|.+||||||+|+.. ++..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC-Nnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC-NNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc-CchHHH
Confidence            44455566666 7777766667777888899999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH---hcCCchHHHHHHhc
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA---GKGAREVNTVLLYF  194 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A---~~~~~~~~~~L~~~  194 (271)
                      +.|++.|+.+-+..-..+.|+...+   ..|+.+|.+||...
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999988877765788999888   67899999998744

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=5.3e-14  Score=84.95  Aligned_cols=54  Identities=46%  Similarity=0.646  Sum_probs=20.5

Q ss_pred             HHCC-CCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH
Q psy8012         125 LDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       125 l~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A  180 (271)
                      ++.| .+++..|..|.||||+|+.. ++.+++++|++.|++++.++. .|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAKDK-DGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT---T-TS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence            4444 55555556666666666665 666666666666666666665 566666554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=8.7e-14  Score=83.99  Aligned_cols=55  Identities=44%  Similarity=0.550  Sum_probs=33.5

Q ss_pred             HHhcC-CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHH
Q psy8012          91 NIEDG-ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA  145 (271)
Q Consensus        91 ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  145 (271)
                      |++.+ .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46667 88999999999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=4.4e-13  Score=120.72  Aligned_cols=102  Identities=27%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..|+.+ ++.|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~-g~~~iv  164 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN-GFREVV  164 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CcHHHH
Confidence            77888888888 9999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhC-------CCCccccCCCCCCCHHHHH
Q psy8012         156 RKLLRH-------GAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       156 ~~Ll~~-------g~~~~~~~~~~g~tpL~~A  180 (271)
                      ++|+++       |++.+..+. .|.+|+..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~-~g~~~~~~~  195 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSF-TGKPPSLED  195 (664)
T ss_pred             HHHHhCCCcccccCCCCCcccc-CCCCccchh
Confidence            999998       888888777 777776544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=2.6e-13  Score=122.26  Aligned_cols=86  Identities=38%  Similarity=0.446  Sum_probs=82.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCc
Q psy8012         107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR  185 (271)
Q Consensus       107 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~  185 (271)
                      ..|+.|+..|+.+.++.|++.|++++..|..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~d~-~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLLDK-DGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCcH
Confidence            358899999999999999999999999999999999999998 999999999999999999998 999999999 99999


Q ss_pred             hHHHHHHhc
Q psy8012         186 EVNTVLLYF  194 (271)
Q Consensus       186 ~~~~~L~~~  194 (271)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999998

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=3.7e-13  Score=80.79  Aligned_cols=54  Identities=43%  Similarity=0.559  Sum_probs=29.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHH
Q psy8012         105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL  159 (271)
Q Consensus       105 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll  159 (271)
                      |.||+|+|+..|+.+++++|++.|.+++..|..|+||||+|+.. ++.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            45666666666666666666666666666666666666666665 6666666553

...

>KOG0515|consensus

Probab=99.39  E-value=5.8e-13  Score=110.74  Aligned_cols=103  Identities=26%  Similarity=0.232  Sum_probs=90.6

Q ss_pred             CcHHHH---HHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-h
Q psy8012         106 GSALIY---AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G  181 (271)
Q Consensus       106 ~t~l~~---a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~  181 (271)
                      .+||.+   |+..|.+++|+..+..-.|+...+..|-|+||-|+.- |+.+||+||++.|+++|..|. .||||||+| .
T Consensus       548 fnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~DS-dGWTPLHCAAS  625 (752)
T KOG0515|consen  548 FNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAADS-DGWTPLHCAAS  625 (752)
T ss_pred             cchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCccC-CCCchhhhhhh
Confidence            456554   6778999999999988889999999999999999998 999999999999999999999 999999999 9


Q ss_pred             cCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012         182 KGAREVNTVLLYFIHEIFKLMANNDTTIL  210 (271)
Q Consensus       182 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~  210 (271)
                      .++..+++.|++.|+.++...-....+..
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~  654 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAA  654 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchh
Confidence            99999999999999988765555444443

>KOG1710|consensus

Probab=99.37  E-value=5e-12  Score=97.87  Aligned_cols=116  Identities=29%  Similarity=0.299  Sum_probs=102.9

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc-CCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~  154 (271)
                      |.-+...+..+ ...|++.--++|.+|..|.++|..|+..|+.+.++.|++.|+|+|.. +..+.||||+|+.+ |+.++
T Consensus        16 Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS-Gn~dv   94 (396)
T KOG1710|consen   16 LLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS-GNQDV   94 (396)
T ss_pred             HHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc-CCchH
Confidence            55556666666 77777665668999999999999999999999999999999999875 57789999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      ..+|++.|+.....+. -|+|+-..| --|+.+++.++-.+
T Consensus        95 crllldaGa~~~~vNs-vgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   95 CRLLLDAGARMYLVNS-VGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHhccCccccccc-hhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999998 899999999 89999999887655

>KOG1710|consensus

Probab=99.33  E-value=1.2e-11  Score=95.83  Aligned_cols=121  Identities=26%  Similarity=0.211  Sum_probs=110.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012         105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG  183 (271)
Q Consensus       105 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~  183 (271)
                      -..||.-++..++.+....|++..-.++..|..|.++|..|+.. |+.+.+++|++.|+|+|......+.||||.| ..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            45799999999999999999988667999999999999999998 9999999999999999988776899999999 999


Q ss_pred             CchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHH
Q psy8012         184 AREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEE  263 (271)
Q Consensus       184 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~  263 (271)
                      +.++.++|++.|+...                                         ..|+-|+|+-..|+--|+-+.|.
T Consensus        91 n~dvcrllldaGa~~~-----------------------------------------~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMY-----------------------------------------LVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             CchHHHHHHhccCccc-----------------------------------------cccchhhhHHHHHHHhcchHHHH
Confidence            9999999999998743                                         68999999999999999999988


Q ss_pred             HHHH
Q psy8012         264 LEKK  267 (271)
Q Consensus       264 ll~~  267 (271)
                      ++..
T Consensus       130 iINN  133 (396)
T KOG1710|consen  130 IINN  133 (396)
T ss_pred             HHhc
Confidence            8764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=2.4e-10  Score=59.00  Aligned_cols=30  Identities=33%  Similarity=0.596  Sum_probs=28.1

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCc
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDK   41 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~   41 (271)
                      +|.||||+||+.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999873

>KOG0818|consensus

Probab=99.00  E-value=2.4e-09  Score=88.88  Aligned_cols=90  Identities=29%  Similarity=0.248  Sum_probs=83.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCc
Q psy8012         108 ALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR  185 (271)
Q Consensus       108 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~  185 (271)
                      -||.+++.|+.+..-.|+..|+++|..+ ..|.||||.|++. |+..-+++|+-+|+|+...|. +|.||+.+| ..|+.
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~d~-~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQDS-SGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCCCC-CCCcHHHHHHhcCch
Confidence            6899999999999999999999999886 5789999999999 999999999999999999999 999999999 99999


Q ss_pred             hHHHHHHhchhhHH
Q psy8012         186 EVNTVLLYFIHEIF  199 (271)
Q Consensus       186 ~~~~~L~~~g~~~~  199 (271)
                      ++++.|++...++.
T Consensus       214 ~laeRl~e~~y~vt  227 (669)
T KOG0818|consen  214 ELAERLVEIQYELT  227 (669)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.99  E-value=7.8e-10  Score=58.81  Aligned_cols=32  Identities=41%  Similarity=0.622  Sum_probs=30.3

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCchh
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEI   43 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~   43 (271)
                      +|.||||+|++.|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            59999999999999999999999999999876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=98.97  E-value=3.1e-09  Score=89.73  Aligned_cols=117  Identities=22%  Similarity=0.256  Sum_probs=99.8

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC--ccccCCCCCCCHHHHH-hcCCc
Q psy8012         109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY--YNVVDGKTGKTPLLHA-GKGAR  185 (271)
Q Consensus       109 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~--~~~~~~~~g~tpL~~A-~~~~~  185 (271)
                      +..|+..++.--++-....|.++-.++....+.||+|+.. |+.++++|++++|..  ++..+. .|.|+||.| ..++.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~de-~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMADE-TGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHHhh-hhhHHHHHHHHhcch
Confidence            4556666666666666677888888899999999999998 999999999999874  566666 899999999 88899


Q ss_pred             hHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHH
Q psy8012         186 EVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELE  265 (271)
Q Consensus       186 ~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll  265 (271)
                      .+..+|++.|+...                                         .+|..|.||-.-|.+.|.+++..+|
T Consensus       948 ~vc~~lvdagasl~-----------------------------------------ktd~kg~tp~eraqqa~d~dlaayl  986 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLR-----------------------------------------KTDSKGKTPQERAQQAGDPDLAAYL  986 (1004)
T ss_pred             HHHHHHHhcchhhe-----------------------------------------ecccCCCChHHHHHhcCCchHHHHH
Confidence            99999999998854                                         6899999999999999999999999


Q ss_pred             HHH
Q psy8012         266 KKL  268 (271)
Q Consensus       266 ~~~  268 (271)
                      +..
T Consensus       987 e~r  989 (1004)
T KOG0782|consen  987 ESR  989 (1004)
T ss_pred             hhh
Confidence            874

>KOG0782|consensus

Probab=98.89  E-value=9.1e-09  Score=87.01  Aligned_cols=116  Identities=27%  Similarity=0.322  Sum_probs=103.2

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--ccccCCCCCcHHHHHHHhCCCHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD--VNFKSATGFTALHMACRFHDDDS  153 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~t~l~~a~~~~~~~~  153 (271)
                      +.-|+..++.. ++-.-..|.+...++.+..+.||+|+..|+-++|++++++|..  ++..+..|.|+||.|+.. ++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~-~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ-RNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh-cchH
Confidence            55666666666 7777788888889999999999999999999999999999844  677789999999999998 9999


Q ss_pred             HHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       154 ~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      +.++|++.|+.+...|. .|.||-.-| ..+..+++.||-..
T Consensus       949 vc~~lvdagasl~ktd~-kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDS-KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheeccc-CCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999 899999999 99999999888654

>KOG0783|consensus

Probab=98.88  E-value=1.3e-09  Score=95.76  Aligned_cols=81  Identities=27%  Similarity=0.376  Sum_probs=68.1

Q ss_pred             CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCH
Q psy8012          98 INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP  176 (271)
Q Consensus        98 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  176 (271)
                      .|..|..|+|+||+++..+..++++||+.+|+++..+| ..|+||||-|+.+ |+++++-.|+++|+.+..+|. +|.+|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyy-G~idca~lLL~~g~SL~i~Dk-eglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYY-GNIDCASLLLSKGRSLRIKDK-EGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhh-chHHHHHHHHhcCCceEEecc-cCCCH
Confidence            57778888888888888888888888888888888887 5788888888888 888888888888888888887 88888


Q ss_pred             HHHH
Q psy8012         177 LLHA  180 (271)
Q Consensus       177 L~~A  180 (271)
                      |..-
T Consensus       123 lq~~  126 (1267)
T KOG0783|consen  123 LQFL  126 (1267)
T ss_pred             HHHH
Confidence            8644

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=6.4e-09  Score=53.64  Aligned_cols=28  Identities=46%  Similarity=0.580  Sum_probs=15.4

Q ss_pred             CCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012         138 GFTALHMACRFHDDDSIVRKLLRHGAYYN  166 (271)
Q Consensus       138 ~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~  166 (271)
                      |+||||+|+.. ++.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASN-GNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHh-CCHHHHHHHHHcCCCCC
Confidence            45555555555 55555555555555554

>KOG0506|consensus

Probab=98.82  E-value=4.6e-09  Score=86.87  Aligned_cols=91  Identities=26%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhC-CCCccccCCCCCCCHHHHH-h
Q psy8012         104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH-GAYYNVVDGKTGKTPLLHA-G  181 (271)
Q Consensus       104 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~tpL~~A-~  181 (271)
                      ++..++++|+..|++..++.+.-.|.|++..|.+.+|+||.|+.. |+++++++|++. +.+++.+|. +|+|||--| .
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~kDR-w~rtPlDdA~~  582 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPKDR-WGRTPLDDAKH  582 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChhhc-cCCCcchHhHh
Confidence            456789999999999999999999999999999999999999998 999999999975 899999998 999999999 9


Q ss_pred             cCCchHHHHHHhchh
Q psy8012         182 KGAREVNTVLLYFIH  196 (271)
Q Consensus       182 ~~~~~~~~~L~~~g~  196 (271)
                      .++.+++++|-+...
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            999999999987744

>KOG0506|consensus

Probab=98.82  E-value=4.2e-09  Score=87.06  Aligned_cols=90  Identities=24%  Similarity=0.176  Sum_probs=80.2

Q ss_pred             CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHH
Q psy8012         137 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDE  215 (271)
Q Consensus       137 ~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~  215 (271)
                      .+...+.+|+.. |++..++.+.-.|.|++..|. ..+|+||+| ..|+.++++||++.--                   
T Consensus       505 ~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~Dy-D~RTaLHvAAaEG~v~v~kfl~~~~k-------------------  563 (622)
T KOG0506|consen  505 DTVINVMYAAKN-GDLSALRRFALQGMDLETKDY-DDRTALHVAAAEGHVEVVKFLLNACK-------------------  563 (622)
T ss_pred             cchhhhhhhhhc-CCHHHHHHHHHhccccccccc-ccchhheeecccCceeHHHHHHHHHc-------------------
Confidence            445688999998 999999999999999999998 999999999 9999999999997621                   


Q ss_pred             HHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         216 MKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                           ..++.+|+.|+|||+-|...++.+++++|++.
T Consensus       564 ---------------------v~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  564 ---------------------VDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             ---------------------CCCChhhccCCCcchHhHhcCcHHHHHHHHHH
Confidence                                 11568999999999999999999999999984

>KOG0783|consensus

Probab=98.77  E-value=5e-09  Score=92.19  Aligned_cols=135  Identities=17%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCcHHHHHHHhcChHH-HHHHHhcCCCCccCCC-CCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012          64 KAINDLLRLNLDFLKNVRSNKYDE-VKKNIEDGACINVSSE-RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA  141 (271)
Q Consensus        64 ~~~~~L~~~g~~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  141 (271)
                      ..+...-..|.+.+|+++..+... +++|+.+|+++..+|. .|.||||.|+.+|+++++..|+++|..+...|.+|.+|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            345666667777799999999999 9999999999999986 79999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH---hcCCchHHHHHHhchhhHHHH
Q psy8012         142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA---GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       142 l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A---~~~~~~~~~~L~~~g~~~~~~  201 (271)
                      |...++- ....+.- -....-|+..--. +-..-|-++   ...+++.+.++...|.-+.+.
T Consensus       123 lq~~~r~-~~~~i~~-~~d~pndvy~wG~-N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV  182 (1267)
T KOG0783|consen  123 LQFLSRV-LSSTIHP-VLDLPNDVYGWGT-NVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQV  182 (1267)
T ss_pred             HHHHhhc-ccccccc-ccCCccceeEecc-cccccccccCCCCCCChHHhHHHHhccHHHHHH
Confidence            9988874 2222211 1111112211111 122334444   456789998888777666543

>KOG0818|consensus

Probab=98.74  E-value=5.3e-08  Score=81.10  Aligned_cols=92  Identities=15%  Similarity=0.072  Sum_probs=79.1

Q ss_pred             CCCCCCCC------hHHHHHHhCCHHHHHHHHHCCCCCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHH
Q psy8012           8 YVPYEDHK------PIAIAIQIGDPQIVKELQNHGAQIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNV   80 (271)
Q Consensus         8 ~~~~~g~t------~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a   80 (271)
                      ..|.+|.|      -||-.++.|+.++.-.||..|+++|..+. .|.||                           ||.|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~Tp---------------------------LHvA  174 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTP---------------------------LHVA  174 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCch---------------------------hHHH
Confidence            34555655      49999999999999999999999998776 49999                           6666


Q ss_pred             HhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHH
Q psy8012          81 RSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD  126 (271)
Q Consensus        81 ~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  126 (271)
                      ++.|+.. +++|+-+|++++..|..|.||+.+|-..||-++.+.|++
T Consensus       175 Ak~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  175 AKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            7777777 888899999999999999999999999999988887776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.73  E-value=2.2e-08  Score=53.09  Aligned_cols=31  Identities=45%  Similarity=0.586  Sum_probs=18.2

Q ss_pred             CCcHHHHHHHhCCCHHHHHHHHhCCCCccccC
Q psy8012         138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVD  169 (271)
Q Consensus       138 ~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~  169 (271)
                      |+||||+|+.. ++.+++++|+++|++++.++
T Consensus         2 G~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQR-GHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHT-TCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHH-HHHHHHHHHHHCcCCCCCCC
Confidence            55566666655 56666666666666655544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705|consensus

Probab=98.70  E-value=4.7e-08  Score=82.82  Aligned_cols=89  Identities=30%  Similarity=0.308  Sum_probs=76.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCC--ccc--cCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hc
Q psy8012         108 ALIYAAWKGYEEIVDLLLDNGAD--VNF--KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK  182 (271)
Q Consensus       108 ~l~~a~~~~~~~~~~~Ll~~~~~--~~~--~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~  182 (271)
                      -|..|+...++..+-.|+.+|..  ++.  .+..|+|+||+|+.. +++.+.++|+-+|+|+..+|. .|+|+|.|| ..
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWyg~dv~~rda-~g~t~l~yar~a  704 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK-GNVVLAQLLIWYGVDVMARDA-HGRTALFYARQA  704 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh-cchhHHHHHHHhCccceeccc-CCchhhhhHhhc
Confidence            45566777788888889988843  332  246789999999998 999999999999999999999 999999999 99


Q ss_pred             CCchHHHHHHhchhhH
Q psy8012         183 GAREVNTVLLYFIHEI  198 (271)
Q Consensus       183 ~~~~~~~~L~~~g~~~  198 (271)
                      |..+|+..|+.+|...
T Consensus       705 ~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  705 GSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccHHHHHHHHHcCCCc
Confidence            9999999999998753

>KOG0522|consensus

Probab=98.53  E-value=2.6e-07  Score=77.80  Aligned_cols=83  Identities=24%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             HHHHHhcChHH-HHHHH--hcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHH
Q psy8012          77 LKNVRSNKYDE-VKKNI--EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDS  153 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll--~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~  153 (271)
                      +|++....... +...+  +.+..++..|..|.||||+|+..|+.+.++.|+..|+++..++..||+|||-|+.. |+.+
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~-g~~q  102 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST-GNEQ  102 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc-CCHH
Confidence            55555555555 33322  23344556666666666666666666666666666666666666666666666666 5555


Q ss_pred             HHHHHHh
Q psy8012         154 IVRKLLR  160 (271)
Q Consensus       154 ~~~~Ll~  160 (271)
                      ++..++.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            5555543

>KOG0522|consensus

Probab=98.47  E-value=5.6e-07  Score=75.87  Aligned_cols=87  Identities=24%  Similarity=0.332  Sum_probs=74.7

Q ss_pred             cHHHHHHHhCCHHHHHHHH--HCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012         107 SALIYAAWKGYEEIVDLLL--DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG  183 (271)
Q Consensus       107 t~l~~a~~~~~~~~~~~Ll--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~  183 (271)
                      .|+|+++...+.+.....+  +.+..++..|..|+||||+|+.. ++.+.++.|+..|+++..+++ .|++|||-| ..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~kN~-~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIKNN-EGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccccc-ccccHHHHHHHcC
Confidence            4699999888877776544  33456888899999999999998 999999999999999999998 999999999 999


Q ss_pred             CchHHHHHHhch
Q psy8012         184 AREVNTVLLYFI  195 (271)
Q Consensus       184 ~~~~~~~L~~~g  195 (271)
                      +.+++..++.+-
T Consensus       100 ~~q~i~~vlr~~  111 (560)
T KOG0522|consen  100 NEQIITEVLRHL  111 (560)
T ss_pred             CHHHHHHHHHHh
Confidence            998888887663

>KOG0705|consensus

Probab=98.44  E-value=9.2e-07  Score=75.26  Aligned_cols=89  Identities=25%  Similarity=0.201  Sum_probs=76.4

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCc----cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACIN----VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD  151 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  151 (271)
                      |.-|....+.. +-+|+.+|....    .-+.+|.|+||+||+.|++.+.+.|+=+|+|+-..|..|+|+|.||-+. +.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a-~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA-GS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc-cc
Confidence            56666666677 888888876533    2356789999999999999999999999999999999999999999998 99


Q ss_pred             HHHHHHHHhCCCCcc
Q psy8012         152 DSIVRKLLRHGAYYN  166 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~~  166 (271)
                      .+++.+|+.+|+...
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999997544

>KOG0511|consensus

Probab=98.31  E-value=2.8e-06  Score=68.92  Aligned_cols=66  Identities=27%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL  142 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  142 (271)
                      |..||+.|..+ +++|++.|.++|.+|....+||.+|+..||.+.+++|+++|+--+.....|..++
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            66666666666 7777776666666666666677777777777777777776655444444554444

>KOG3609|consensus

Probab=98.29  E-value=3.3e-06  Score=75.27  Aligned_cols=116  Identities=20%  Similarity=0.045  Sum_probs=93.4

Q ss_pred             ChHHHHHHhCCHHHHHHHHHCC----CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc---HHHHHHHhcChHH
Q psy8012          15 KPIAIAIQIGDPQIVKELQNHG----AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL---DFLKNVRSNKYDE   87 (271)
Q Consensus        15 t~L~~A~~~g~~~~~~~Ll~~g----~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~---~~l~~a~~~~~~~   87 (271)
                      --.-.|+++|+...|+..++..    .++|..|.-|.++    ++.|+.+.+.+++++|+++..   +-|.+|...+..+
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~a----l~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~  102 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLA----LHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVP  102 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhc----eecccccccHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence            3466799999999999998753    5788899999999    999999999999999999874   3488888888888


Q ss_pred             -HHHHHhcCCCCc----------cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc
Q psy8012          88 -VKKNIEDGACIN----------VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK  134 (271)
Q Consensus        88 -~~~ll~~~~~~~----------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~  134 (271)
                       ++.++.+.....          ..-..+.||+.+||-.++.|++++|+++|+.+...
T Consensus       103 ~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  103 LVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence             888886643221          11235678999999999999999999988877654

>KOG3609|consensus

Probab=98.24  E-value=3.4e-06  Score=75.17  Aligned_cols=114  Identities=27%  Similarity=0.132  Sum_probs=85.1

Q ss_pred             HHHHHhcChHH-HHHHHhcC----CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012          77 LKNVRSNKYDE-VKKNIEDG----ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD  151 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  151 (271)
                      +..|+..|+.. ++..++..    .++|.+|.-|+++++.|+.+.+.++.++|++.....       ..+|.+|+.. +.
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~-~~  100 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV-GS  100 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH-HH
Confidence            45556666666 66555432    457788999999999999999999999999886544       3578888888 99


Q ss_pred             HHHHHHHHhCCCCc---------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         152 DSIVRKLLRHGAYY---------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~---------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      .++++.++.+....         +...-..+.|||..| ..++.||+++|+++|+.+
T Consensus       101 v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  101 VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            99999998764322         111112578999999 889999999999998764

>KOG2384|consensus

Probab=98.23  E-value=1.7e-06  Score=63.55  Aligned_cols=64  Identities=28%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             CCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       129 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      .++|..|..|||+++.|+.. ++.+.+.+|+.+| +++-..+. .+.+++.+| ..|..++++.|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~e-g~~eavsyllgrg~a~vgv~d~-ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAME-GSNEAVSYLLGRGVAFVGVTDE-SSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhh-cchhHHHHHhccCccccccccc-ccchHHHHHHhcChHHHHHHHHHH
Confidence            45666777777777777776 7777777777777 56666666 677777777 66777777666655

>KOG0520|consensus

Probab=98.22  E-value=1.3e-06  Score=79.34  Aligned_cols=132  Identities=16%  Similarity=0.100  Sum_probs=106.5

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCCcHHHHHHHhCCCHHHHHHHH-hCCCCccccCCCCCCCH
Q psy8012          99 NVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLL-RHGAYYNVVDGKTGKTP  176 (271)
Q Consensus        99 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll-~~g~~~~~~~~~~g~tp  176 (271)
                      ......|.+.+|+++..+..-+++.+++. |......+..+.-.+|+++.  ++.+++-+++ -.|..++.+|. .|+||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~--lg~ewA~ll~~~~~~ai~i~D~-~G~tp  644 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA--LGYEWAFLPISADGVAIDIRDR-NGWTP  644 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh--cCCceeEEEEeecccccccccC-CCCcc
Confidence            34456789999999999999999999986 66666678888889999554  6777766665 45889999999 99999


Q ss_pred             HHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHH
Q psy8012         177 LLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKK  255 (271)
Q Consensus       177 L~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~  255 (271)
                      ||+| .+|+..++.-|+..|++.....                                   ++.-.+-.|.|+.++|..
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~t-----------------------------------dps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVT-----------------------------------DPSPETPGGKTAADLARA  689 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhcccccccc-----------------------------------CCCCCCCCCCchhhhhhc
Confidence            9999 9999999999998888753110                                   022356689999999999


Q ss_pred             hCCCcHHHHHHHH
Q psy8012         256 RGFPLLEELEKKL  268 (271)
Q Consensus       256 ~~~~~~~~ll~~~  268 (271)
                      +|+..+..+|.+-
T Consensus       690 ~g~~gia~~lse~  702 (975)
T KOG0520|consen  690 NGHKGIAGYLSEK  702 (975)
T ss_pred             ccccchHHHHhhh
Confidence            9999999998763

>KOG0521|consensus

Probab=98.17  E-value=2.4e-06  Score=77.70  Aligned_cols=97  Identities=37%  Similarity=0.376  Sum_probs=82.3

Q ss_pred             hcCCCCcc--CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCC
Q psy8012          93 EDGACINV--SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG  170 (271)
Q Consensus        93 ~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~  170 (271)
                      ..++..+.  .-..|.+++|.|+.++..-.++.|+++|+++|..+..|++|+|.+... |+...+..|+++|++.++.+.
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~-g~~~~~~~ll~~~a~~~a~~~  720 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATAS-GHTSIACLLLKRGADPNAFDP  720 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhh-cccchhhhhccccccccccCc
Confidence            33444443  234678999999999999999999999999999999999999999998 999999999999999999998


Q ss_pred             CCCCCHHHHH-hcCCchHHHHH
Q psy8012         171 KTGKTPLLHA-GKGAREVNTVL  191 (271)
Q Consensus       171 ~~g~tpL~~A-~~~~~~~~~~L  191 (271)
                       .|++|+++| ...+.+++-++
T Consensus       721 -~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  721 -DGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             -cCcchhhHHhhhccccHHHHH
Confidence             999999999 54555544333

>KOG0511|consensus

Probab=98.11  E-value=5e-06  Score=67.49  Aligned_cols=59  Identities=15%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             CChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF   76 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~   76 (271)
                      .--|+.||+.|+.+.+++|++.|.++|..|....+|    |.+|+..|+.++++.|+++|+-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~sp----L~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSP----LYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccH----HHHHHHcCcHHHHHHHHHcCCcc
Confidence            345899999999999999999999999999999999    99999999999999999998744

>KOG0520|consensus

Probab=98.06  E-value=6.1e-06  Score=75.16  Aligned_cols=124  Identities=18%  Similarity=0.199  Sum_probs=77.6

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-   87 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-   87 (271)
                      ...|.|.+|.++..+....++.+++- |......+.+|...                           +|.++..+..- 
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV---------------------------~hfca~lg~ewA  623 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGV---------------------------IHFCAALGYEWA  623 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCCh---------------------------hhHhhhcCCcee
Confidence            34455555555555555555555553 33333334444444                           44433333333 


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcc------ccCCCCCcHHHHHHHhCCCHHHHHHHHhC
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN------FKSATGFTALHMACRFHDDDSIVRKLLRH  161 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~  161 (271)
                      +....-.|..++.+|..|+||||+|+..|+..++..|++.|++..      .....|.|+--+|... ++..+..+|-+.
T Consensus       624 ~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~-g~~gia~~lse~  702 (975)
T KOG0520|consen  624 FLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN-GHKGIAGYLSEK  702 (975)
T ss_pred             EEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc-cccchHHHHhhh
Confidence            445556677788888888888888888888888888887664432      2244677888877776 777777776543

>KOG0521|consensus

Probab=98.03  E-value=5.4e-06  Score=75.53  Aligned_cols=105  Identities=25%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             HHHHHHHHhHHHHHH--HHHcCcHHHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC
Q psy8012          54 AHSALELEERKAIND--LLRLNLDFLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD  130 (271)
Q Consensus        54 l~~A~~~~~~~~~~~--L~~~g~~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  130 (271)
                      ...|.....-..+.+  -+..|+..+|.|+..+... .++|+++|+++|..+..|.+|+|.+...|+...+..++++|++
T Consensus       635 ~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~  714 (785)
T KOG0521|consen  635 PRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD  714 (785)
T ss_pred             hhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc
Confidence            444444443334443  2344566689999999888 9999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHhCCCHHHHHHHH
Q psy8012         131 VNFKSATGFTALHMACRFHDDDSIVRKLL  159 (271)
Q Consensus       131 ~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll  159 (271)
                      .+..+..|.+|+.+|... .+.+++-++.
T Consensus       715 ~~a~~~~~~~~l~~a~~~-~~~d~~~l~~  742 (785)
T KOG0521|consen  715 PNAFDPDGKLPLDIAMEA-ANADIVLLLR  742 (785)
T ss_pred             ccccCccCcchhhHHhhh-ccccHHHHHh
Confidence            999999999999999887 6666555543

>KOG2384|consensus

Probab=97.97  E-value=3.4e-05  Score=56.90  Aligned_cols=70  Identities=26%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCc
Q psy8012          95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY  165 (271)
Q Consensus        95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~  165 (271)
                      +.++|.+|..|+|+++.|+..|.-+.+.+|+.+| +.+...+..+.+++.+|-+. +..+++..|.+.-.+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~-g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKG-GAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhc-ChHHHHHHHHHHhccC
Confidence            4578999999999999999999999999999999 88999999999999999997 9999999998764443

>smart00248 ANK ankyrin repeats

Probab=97.55  E-value=0.00017  Score=35.93  Aligned_cols=29  Identities=31%  Similarity=0.607  Sum_probs=25.8

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCC
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQID   40 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~   40 (271)
                      .|.||+|+|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.01  E-value=0.0011  Score=56.22  Aligned_cols=72  Identities=24%  Similarity=0.343  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHCCCCcccc------CCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHHhcCCchHHHH
Q psy8012         117 YEEIVDLLLDNGADVNFK------SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTV  190 (271)
Q Consensus       117 ~~~~~~~Ll~~~~~~~~~------~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~  190 (271)
                      -...+++|.+++.+.|..      +....|+||+|+.. +..+++.+|++.|+|+...|. .|+||..++.  +.++-..
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Leeg~Dp~~kd~-~Grtpy~ls~--nkdVk~~  478 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEEGCDPSTKDG-AGRTPYSLSA--NKDVKSI  478 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhc-chHHHHHHHHHhcCCchhccc-CCCCcccccc--cHHHHHH
Confidence            356778888887666542      34567899999998 999999999999999999998 8999988772  4444444


Q ss_pred             HH
Q psy8012         191 LL  192 (271)
Q Consensus       191 L~  192 (271)
                      ++
T Consensus       479 F~  480 (591)
T KOG2505|consen  479 FI  480 (591)
T ss_pred             HH
Confidence            44

>smart00248 ANK ankyrin repeats

Probab=96.84  E-value=0.0027  Score=31.19  Aligned_cols=26  Identities=50%  Similarity=0.592  Sum_probs=13.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCC
Q psy8012         105 CGSALIYAAWKGYEEIVDLLLDNGAD  130 (271)
Q Consensus       105 g~t~l~~a~~~~~~~~~~~Ll~~~~~  130 (271)
                      +.||+|+++..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34555555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.67  E-value=0.0023  Score=54.32  Aligned_cols=48  Identities=13%  Similarity=0.035  Sum_probs=42.0

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALEL   60 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~   60 (271)
                      .++-.-|+||+|+.+|.-++|.+||+.|+|+..+|..|.||    +.++...
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtp----y~ls~nk  473 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTP----YSLSANK  473 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCc----ccccccH
Confidence            34557789999999999999999999999999999999999    7776643

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.54  E-value=0.1  Score=38.92  Aligned_cols=131  Identities=15%  Similarity=0.080  Sum_probs=86.4

Q ss_pred             hHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcC-----cHHHHHHHhcChHH---
Q psy8012          16 PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN-----LDFLKNVRSNKYDE---   87 (271)
Q Consensus        16 ~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g-----~~~l~~a~~~~~~~---   87 (271)
                      .|.-|++++-+.++++.-+...+-   -..+++.    +-.||+..+.++|.|+-..-     ...+..|....+.+   
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~L----FElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLys  121 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQEL----FELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYS  121 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHH----HHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHH
Confidence            456688888888888776543211   1234444    88999999999999995442     12277777777665   


Q ss_pred             HHH--HHhcCCCCccCCC--CCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          88 VKK--NIEDGACINVSSE--RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        88 ~~~--ll~~~~~~~~~~~--~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                      +.+  ++.+.......|.  --..-|..|+..|-...+.-.++.|.+++.      ++|..|+.. ++..++.+++.
T Consensus       122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y-nhRkIL~yfi~  191 (192)
T PF03158_consen  122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY-NHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh-hHHHHHHHhhc
Confidence            222  2222211111111  011346678899999999989999987764      689999999 99999988874

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.80  E-value=0.4  Score=37.09  Aligned_cols=89  Identities=15%  Similarity=0.088  Sum_probs=44.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCccccC----CCCCcHHHHHHHh-CCCHHHHHHHHhCCC-CccccC--CCCCCCHHH
Q psy8012         107 SALIYAAWKGYEEIVDLLLDNGADVNFKS----ATGFTALHMACRF-HDDDSIVRKLLRHGA-YYNVVD--GKTGKTPLL  178 (271)
Q Consensus       107 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~t~l~~a~~~-~~~~~~~~~Ll~~g~-~~~~~~--~~~g~tpL~  178 (271)
                      +++.+++..+..+++-+|+++- .....|    ..+..-+.++... +.+..++++++++|. ++|..-  .+.|.|-|-
T Consensus       181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            4555555555555555555431 111111    0122233333322 234556666666663 444321  115777777


Q ss_pred             HH-hcCCchHHHHHHhchh
Q psy8012         179 HA-GKGAREVNTVLLYFIH  196 (271)
Q Consensus       179 ~A-~~~~~~~~~~L~~~g~  196 (271)
                      -| .+++.+++.+|+++|+
T Consensus       260 NA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCc
Confidence            77 7777777777777776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.11  E-value=0.16  Score=32.35  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=31.2

Q ss_pred             CChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHc
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRL   72 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~   72 (271)
                      ...+..|+..|+.++++.+++.+ .++      ...    +..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~----l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDC----LEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHH----HHHHHHHhhHHHHHHHHHh
Confidence            34567778888888888777654 222      122    7777777777777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.82  E-value=0.39  Score=37.10  Aligned_cols=118  Identities=18%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH--hcCCch
Q psy8012         109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGARE  186 (271)
Q Consensus       109 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A--~~~~~~  186 (271)
                      |--|+...+.+.+.-++....       .-.+++.+++.. +..+++.+|+.. ..+..+         -.|  ..+..+
T Consensus       157 ledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~-~K~dva~~lls~-f~ft~~---------dv~~~~~~~yd  218 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGN-AKEDVALYLLSK-FNFTKQ---------DVASMEKELYD  218 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcc-cHHHHHHHHHhh-cceecc---------hhhhcCcchhh
Confidence            444666666666666654321       234678888876 888888888854 111111         222  223445


Q ss_pred             HHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012         187 VNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEK  266 (271)
Q Consensus       187 ~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~  266 (271)
                      +-..|.++|++.               .+++..+.+|-.+.+.         .-.+-..|.|-|+-|.++++.+|+.+|-
T Consensus       219 ieY~LS~h~a~~---------------kvL~~Fi~~Glv~vN~---------~F~~~NSGdtMLDNA~Ky~~~emi~~Ll  274 (284)
T PF06128_consen  219 IEYLLSEHSASY---------------KVLEYFINRGLVDVNK---------KFQKVNSGDTMLDNAMKYKNSEMIAFLL  274 (284)
T ss_pred             HHHHHhhcCCcH---------------HHHHHHHhccccccch---------hhhccCCcchHHHhHHhcCcHHHHHHHH
Confidence            544555566654               4556666666443222         2246778999999999999999999987


Q ss_pred             HH
Q psy8012         267 KL  268 (271)
Q Consensus       267 ~~  268 (271)
                      |.
T Consensus       275 k~  276 (284)
T PF06128_consen  275 KY  276 (284)
T ss_pred             Hc
Confidence            74

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.70  E-value=4.4  Score=30.49  Aligned_cols=131  Identities=11%  Similarity=-0.009  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHcCc-------HHHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHH
Q psy8012          50 AARIAHSALELEERKAINDLLRLNL-------DFLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIV  121 (271)
Q Consensus        50 ~~~~l~~A~~~~~~~~~~~L~~~g~-------~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  121 (271)
                      ....+..|+..+-..+++..-+...       .++-.||+....+ ++|+-.   +...  .+-.+-+-.|....+.+..
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~~~~~q~LFElAC~~qkydiV~WI~q---nL~i--~~~~~iFdIA~~~kDlsLy  120 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENERYLNQELFELACEEQKYDIVKWIGQ---NLHI--YNPEDIFDIAFAKKDLSLY  120 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcchhHHHHHHHHHHHHccccHHHHHhh---ccCC--CCchhhhhhhhhccchhHH
Confidence            3445777888888888887766532       2278899888888 887732   2211  2234556678888877653


Q ss_pred             H----HHHHCCCCccccCC--CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh
Q psy8012         122 D----LLLDNGADVNFKSA--TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY  193 (271)
Q Consensus       122 ~----~Ll~~~~~~~~~~~--~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~  193 (271)
                      .    .+.++...-+..|.  --..-|..|+.. |-...+...+++|.+++.       +.|..| .+++.+++.+++.
T Consensus       121 slGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~k-gll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  121 SLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAK-GLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHHHHHC-CCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhhc
Confidence            2    22333211111110  011346778887 999999999999877664       788889 8889998888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.06  E-value=1.7  Score=27.59  Aligned_cols=19  Identities=21%  Similarity=-0.001  Sum_probs=12.4

Q ss_pred             HHHHHHHHhHHHHHHHHHc
Q psy8012          54 AHSALELEERKAINDLLRL   72 (271)
Q Consensus        54 l~~A~~~~~~~~~~~L~~~   72 (271)
                      +..|+..|+.++++.+++.
T Consensus        10 l~~Ai~GGN~eII~~c~~~   28 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKK   28 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHH
Confidence            6666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-12
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-11
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		9e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-08
1uoh_A	226	Human Gankyrin Length = 226		6e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		7e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		8e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-04

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   ++  + L  AAW G+ EIV++LL +GADVN + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G+T LH+A   +    IV  LL++GA  N  D   G TPL L A +G  E+  VLL
Sbjct: 78  TDGWTPLHLAAD-NGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLEIVEVLL 133

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 86  DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
           D VK  IE+GA +N S     + L YAA +G++EIV LL+  GADVN K + G T LH A
Sbjct: 18  DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
            +      IV+ L+  GA  N  D   G+TPL +A K G +E+  +L+
Sbjct: 78  AK-EGHKEIVKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLI 123

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA  G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
            TG T LH+A      + IV  LL+HGA  N  D   G TPL  A K G  E+  VLL
Sbjct: 78  LTGITPLHLAAATGHLE-IVEVLLKHGADVNAYD-NDGHTPLHLAAKYGHLEIVEVLL 133

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+   + + DEV+  + +GA +N + +   + L  AA  G  EIV++LL NGADVN   
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
           + G T LH+A  +     IV  LL+HGA  N  D + G TPL L A  G  E+  VLL
Sbjct: 70  SAGITPLHLAA-YDGHLEIVEVLLKHGADVNAYD-RAGWTPLHLAALSGQLEIVEVLL 125

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA+ G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
             G T LH+A  F   + IV  LL++GA  N  D   G TPL L A +G  E+  VLL +
Sbjct: 78  TLGSTPLHLAAHFGHLE-IVEVLLKNGADVNAKD-DNGITPLHLAANRGHLEIVEVLLKY 135

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL  GADVN K 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G+T LH+A R      IV  LL+ GA  N  D K G TPL L A +G  E+  VLL
Sbjct: 66  KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 121

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL  GADVN K 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G+T LH+A R      IV  LL+ GA  N  D K G TPL L A +G  E+  VLL
Sbjct: 66  KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 121

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   E   + L  A   G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVL 191
           A GFT LH+A  F     I   LL+HGA  N  D K GKT   +  G G  ++  +L
Sbjct: 78  AIGFTPLHLAA-FIGHLEIAEVLLKHGADVNAQD-KFGKTAFDISIGNGNEDLAEIL 132

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL  GADVN K 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G+T LH+A R      IV  LL+ GA  N  D K G TPL L A +G  E+  VLL
Sbjct: 78  KDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIVEVLL 133

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N       + L  AA  G+ EIV++LL NGADVN K 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
           + G T LH+A R      IV  LL++GA  N  D   G TPL L A +G  E+  VLL
Sbjct: 78  SLGVTPLHLAAR-RGHLEIVEVLLKNGADVNASDSH-GFTPLHLAAKRGHLEIVEVLL 133

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 86  DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
           D VK  IE+GA +N S     + L +AA  G++E+V LL+  GADVN K + G T LH A
Sbjct: 18  DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
              +    +V+ L+  GA  N  D   G+TPL HA + G +EV  +L+
Sbjct: 78  AE-NGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLI 123

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  I +GA +N       + L  AA  G+ EIV++LL +GADV+   
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
             GFT LH+A        IV  LL++GA  N  D  TG TPL L A +G  E+  VLL +
Sbjct: 78  VYGFTPLHLAA-MTGHLEIVEVLLKYGADVNAFD-MTGSTPLHLAADEGHLEIVEVLLKY 135

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            ++   +   D VK  +E+GA +N S     + L  AA  G++E+V LLL  GAD N K 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
           + G T LH+A   +    +V+ LL  GA  N  D   GKTPL L A  G +EV  +LL
Sbjct: 68  SDGKTPLHLAAE-NGHKEVVKLLLSQGADPNAKD-SDGKTPLHLAAENGHKEVVKLLL 123

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N S     + L  AA+ G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
           + G T LH+A  R H +  +V  LL++GA  N  D   G TPL L A  G  E+  VLL
Sbjct: 78  SLGVTPLHLAADRGHLE--VVEVLLKNGADVNAND-HNGFTPLHLAANIGHLEIVEVLL 133

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N       + L  AA  G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLY 193
            +G T LH+A  R H +  IV  LL++GA  N  D   G TPL L A  G  E+  VLL 
Sbjct: 78  FSGSTPLHLAAKRGHLE--IVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 194 F 194
           +
Sbjct: 135 Y 135

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA KG+ EIV++LL +GADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
             G T LH+A  +   + IV  LL++GA  N  D   G TPL L A  G  E+  VLL +
Sbjct: 78  KMGDTPLHLAALYGHLE-IVEVLLKNGADVNATD-TYGFTPLHLAADAGHLEIVEVLLKY 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA+ G+ EIV++LL +GADV+   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
             G+T LH+A  +   + IV  LL++GA  N +D   G TPL  A K G  E+  VLL
Sbjct: 78  VFGYTPLHLAAYWGHLE-IVEVLLKNGADVNAMD-SDGMTPLHLAAKWGYLEIVEVLL 133

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA  G+ EIV++LL +GADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G T LH+A      + IV  LL+HGA  N VD   G TPL L A  G  E+  VLL
Sbjct: 78  IMGSTPLHLAALIGHLE-IVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLL 133

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA  G+ EIV++LL +GADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G T LH+A      + IV  LL+HGA  N VD   G TPL L A  G  E+  VLL
Sbjct: 78  IXGSTPLHLAALIGHLE-IVEVLLKHGADVNAVD-TWGDTPLHLAAIMGHLEIVEVLL 133

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 86  DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
           D VK  +E+GA  N S     + L YAA  G++EIV LLL  GAD N K + G T LH A
Sbjct: 18  DRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYA 77
Query: 146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 192
              +    IV+ LL  GA  N  D   G+TPL +A + G +E+  +LL
Sbjct: 78  AE-NGHKEIVKLLLSKGADPNAKD-SDGRTPLHYAAENGHKEIVKLLL 123

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+    +GA +N +     + L  AA  G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
            TG T LH+A  + D   IV  LL+HGA  N  D K GKT  
Sbjct: 78  NTGRTPLHLAA-WADHLEIVEVLLKHGADVNAQD-KFGKTAF 117

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           R+   + VK  +E GA +N   +   + L  AA  G+ E+V LLL+ GADVN K   G T
Sbjct: 11  RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
            LH+A R +    +V+ LL  GA  N  D K G+TPL L A  G  EV  +LL
Sbjct: 71  PLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLL 121

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N       + L  AA+ G+ EIV++LL NGADVN   
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G T L +A  F   + IV  LL++GA  N  D   G TPL L A  G  E+  VLL
Sbjct: 78  HAGMTPLRLAALFGHLE-IVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVLL 133

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA  N       + L  AA  G+ EIV++LL NGADVN   
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 192
             G T LH+A      + IV  LL++GA  N  D  TG TPL L A  G  E+  VLL
Sbjct: 66  TNGTTPLHLAASLGHLE-IVEVLLKYGADVNAKDA-TGITPLYLAAYWGHLEIVEVLL 121

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   E   + L  AA  G+ EIV++LL  GADVN + 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
             G T LH+A  R H +  IV  LL+HGA  N  D K GKT  
Sbjct: 78  NFGITPLHLAAIRGHLE--IVEVLLKHGADVNAQD-KFGKTAF 117

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA   + EIV++LL NGADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 176
           A G T LH+   +   + IV  LL+HGA  N  D K GKT 
Sbjct: 78  AIGETPLHLVAMYGHLE-IVEVLLKHGADVNAQD-KFGKTA 116

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +  +  + L  AA   + EIV++LL +GADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
             G T LH+A  F   + IV  LL+HGA  N  D K GKT  
Sbjct: 78  NDGSTPLHLAALFGHLE-IVEVLLKHGADVNAQD-KFGKTAF 117

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L  AA  G+ EIV++LL  GADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLYF 194
             G T LH+A   +    IV  LL+HGA  N  D   G TPL L A  G  E+  VLL +
Sbjct: 78  NYGATPLHLAAD-NGHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKY 135

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65  AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
            +++++  NL +     S K DE+K+ I  D +    + +   +AL +A   G+ EIV+ 
Sbjct: 4   CVSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           LL  G  VN K   G++ LH+A     D+ IV+ LL  GA+ N V+ + G TPL +A   
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDE-IVKALLVKGAHVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
            R    V+L
Sbjct: 117 NRHEIAVML 125

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65  AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
            +++++  NL +     S K DE+K+ I  D +    + +   +AL +A   G+ EIV+ 
Sbjct: 4   CVSNIMICNLAY-----SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           LL  G  VN K   G++ LH+A     D+ IV+ LL  GA+ N V+ + G TPL +A   
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLVKGAHVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
            R    V+L
Sbjct: 117 NRHEIAVML 125

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL +GADVN   
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           + G T LH+A      + IV  LL +GA  N  D K GKT  
Sbjct: 78  SWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL +GADVN + 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
             G T LH+A      + IV  LL +GA  N  D K GKT  
Sbjct: 78  IWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65  AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
            +++L+  NL +     S K +E+K++I  D +    + +   +AL +A   G+ EIV+ 
Sbjct: 5   CVSNLMVCNLAY-----SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 59
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           LL  G  VN K   G++ LH+A     D+ IV+ LL  GA  N V+ + G TPL +A   
Sbjct: 60  LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLGKGAQVNAVN-QNGCTPLHYAASK 117
Query: 184 AREVNTVLL 192
            R    V+L
Sbjct: 118 NRHEIAVML 126

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Query: 65  AINDLLRLNLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEEIVDL 123
            +++L+  NL +     S K +E+K++I  D +    + +   +AL +A   G+ EIV+ 
Sbjct: 4   CVSNLMVCNLAY-----SGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 58
Query: 124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           LL  G  VN K   G++ LH+A     D+ IV+ LL  GA  N V+ + G TPL +A   
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGRDE-IVKALLGKGAQVNAVN-QNGCTPLHYAASK 116
Query: 184 AREVNTVLL 192
            R    V+L
Sbjct: 117 NRHEIAVML 125

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL +GADVN   
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
             G T LH+A      + IV  LL +GA  N  D K GKT  
Sbjct: 78  IWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KFGKTAF 117

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N +     + L      G+ EI+++LL   ADVN   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 136 ATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLLY 193
            +G+T LH+A  R H +  IV  LL++GA  N +D   G TPL L A  G  E+  VLL 
Sbjct: 78  KSGWTPLHLAAYRGHLE--IVEVLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 194 F 194
           +
Sbjct: 135 Y 135

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           R+   + VK  +E GA +N   +   + L  AA  G+ E+V LLL+ GADVN K   G T
Sbjct: 11  RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70
Query: 141 ALHMACRFHDDDSIVRKLLRHGAY 164
            LH+A R +    +V+ LL  GAY
Sbjct: 71  PLHLAAR-NGHLEVVKLLLEAGAY 93

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77  LKNVRSNKY-DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
           L N   N + +EVKK +  GA +N  S+   + L  AA  G+ EIV LLL  GADVN +S
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 136 ATGFTALHMACR 147
             G T  H+A +
Sbjct: 73  KDGNTPEHLAKK 84

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
           G  +NV+S+   S L  AA  G  +++ LLL +GA+   ++A     LH+AC+      +
Sbjct: 76  GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQV 134
Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTI 209
           V+ LL   A  N  D  +G TPL++A  G            HE+  L+  +  +I
Sbjct: 135 VKCLLDSNAKPNKKD-LSGNTPLIYACSGGH----------HELVALLLQHGASI 178

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 38/191 (19%)
Query: 82  SNKYDEVKKNIEDGACIN-VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           +N+ D VK  I  GA ++ +  +   + L +A  +G+  +V  L+  GAD +     G +
Sbjct: 52  NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCS 111
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEI-- 198
            +H+A +F    SIV  L+  G   +++D + G TPL+ A      V+   L     +  
Sbjct: 112 CIHLAAQF-GHTSIVAYLIAKGQDVDMMD-QNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 199 -------------FKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDA 245
                        + ++A N T I        SL+LE                   +N  
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVI--------SLLLEAGANVD------------AQNIK 209
Query: 246 GETILDIAKKR 256
           GE+ LD+AK+R
Sbjct: 210 GESALDLAKQR 220

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 101 SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160
           ++ R  + L  A+ KG    V+ LL NG+D N K   G+T LH AC  H    +V  LL+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN-HGHLKVVELLLQ 64
Query: 161 HGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYF 194
           H A  N   G    +PL  A K G  ++  +LL +
Sbjct: 65  HKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLSY 98

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76  FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
            L+  ++   + VKK   ++   C ++   R  + L +AA      +V+ LL +GADV+ 
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
           K   G   LH AC +   + +   L++HGA  NV D    K   LH  A KG  E+  +L
Sbjct: 71  KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 127
Query: 192 L 192
           L
Sbjct: 128 L 128

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76  FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
            L+  ++   + VKK   ++   C ++   R  + L +AA      +V+ LL +GADV+ 
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
           K   G   LH AC +   + +   L++HGA  NV D    K   LH  A KG  E+  +L
Sbjct: 75  KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 131
Query: 192 L 192
           L
Sbjct: 132 L 132

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 76  FLKNVRSNKYDEVKK--NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
            L+  ++   + VKK   ++   C ++   R  + L +AA      +V+ LL +GADV+ 
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVL 191
           K   G   LH AC +   + +   L++HGA  NV D    K   LH  A KG  E+  +L
Sbjct: 73  KDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLHEAAAKGKYEICKLL 129
Query: 192 L 192
           L
Sbjct: 130 L 130

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
           G+  + A   G  E V  LL+ GAD+N+ +  G TALH AC   D+  +V+ L+ +GA  
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC-IDDNVDMVKFLVENGANI 99
Query: 166 NVVDGKTGKTPL 177
           N  D + G  PL
Sbjct: 100 NQPDNE-GWIPL 110

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
            + S  R  + L  AA      IV LLL +GADV+ K   G   LH AC +   + +   
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE-VTEL 109
Query: 158 LLRHGAYYNVVDGKTGKTPLLHAGKGAR-EVNTVLL 192
           LL+HGA  N +D     TPL  A    R EV ++LL
Sbjct: 110 LLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLL 144

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDK---EIYSKNKAAARIAHSALE---LEERKAINDL 69
           P+ +A  +G   IVK L   GA  +    ++ +    AAR  H+ +    L+ +  +N  
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 70  LRLNLDFLK-NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
            + +   L    R    + VK  +E+ A  N+++    + L  AA +G+ E V  LL+  
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           A     +  GFT LH+A ++     +   LL   A+ N   GK G TPL
Sbjct: 137 ASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAA-GKNGLTPL 183

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           + N+ +  +  ++ G   N  S +  + L  AA +G+ E+V LLL   A+ N  + +G T
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 280
Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT--GKTPL 177
            LH+  +      +   L++HG    +VD  T  G TPL
Sbjct: 281 PLHLVAQ-EGHVPVADVLIKHGV---MVDATTRMGYTPL 315

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           IE    IN + E   + L++AA  G   +V+ LL NGAD         +AL +AC     
Sbjct: 39  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           D IV+ LL  G   N  D   G TPLL+A  G
Sbjct: 99  D-IVKMLLDCGVDVNEYDWN-GGTPLLYAVHG 128

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R  +   V+  I  GA INV +    + L  AA  G+ +IV  LL   AD+N  +  G 
Sbjct: 47  CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 187
             LH AC F   D +   L+ +GA  ++ + K G+ P+  A    RE+
Sbjct: 107 VPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLREL 152

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           IE    IN + E   + L++AA  G   +V+ LL NGAD         +AL +AC     
Sbjct: 21  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           D IV+ LL  G   N  D   G TPLL+A  G
Sbjct: 81  D-IVKMLLDCGVDVNEYDWN-GGTPLLYAVHG 110

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           IE    IN + E   + L++AA  G   +V+ LL NGAD         +AL +AC     
Sbjct: 23  IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 183
           D IV+ LL  G   N  D   G TPLL+A  G
Sbjct: 83  D-IVKMLLDCGVDVNEYD-WNGGTPLLYAVHG 112

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R  +   V+  I  GA INV +    + L  AA  G+ +IV  LL   AD+N  +  G 
Sbjct: 42  CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 187
             LH AC F   D +   L+ +GA  ++ + K G+ P+  A    RE+
Sbjct: 102 VPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDKAKAPLREL 147

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
           + L  AA +G+  IV++LL +GADVN K     TALH A   H+   +V  L+++GA
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGA 124

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +N   +   + L  AA +G+ EIV++LL  GADVN + 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 136 ATGFTALHMAC 146
             G TA  ++ 
Sbjct: 66  KFGKTAFDISI 76

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFK 134
            ++   +N  + VK  I+ GA ++       + L  AA KG+ E+V  LL NG  DVN +
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 192
              G+T +  A  +   D +V+ LL  G+  N+ D +        A  G  ++  +LL
Sbjct: 108 DDGGWTPMIWATEYKHVD-LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
           V++N+    +K +  G+ +N       + L+++   GY E+   LL++GA+VN ++  G 
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Query: 140 TALHMACRFHDDDSIVRKLLRHGA 163
           T L +A ++   + IV+KLL  GA
Sbjct: 136 TPLIVASKYGRSE-IVKKLLELGA 158

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            L+  R+ + DEV+  + +GA +    +   + L  AA  G+ E+V LLL+ GADVN + 
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 136 ATGFTALHMACRFHDDD 152
             G TA  ++    ++D
Sbjct: 70  KFGKTAFDISIDNGNED 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-17
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	6e-14
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.5 bits (218), Expect = 2e-21
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +E GA  ++ ++   SAL  A+  GY +IV LLL+   D+N     G T L  A R  H 
Sbjct: 56  LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV 115

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
               V  LL  GA        +G TP+  A   G R+V  V+ 
Sbjct: 116 K--CVEALLARGADLTTEA-DSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 83.2 bits (207), Expect = 6e-20
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 81  RSNKYDEVKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
              + D++K+++  G   +N   ER  + LI+A+  G  E V  LL+ GAD +  +    
Sbjct: 11  AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE 70

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +AL +A    + D  IV  LL      N+ D   G TPLL+A
Sbjct: 71  SALSLASTGGYTD--IVGLLLERDVDINIYD-WNGGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 81.3 bits (202), Expect = 4e-19
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +E    IN+     G+ L+YA    + + V+ LL  GAD+  ++ +G+T + +A    + 
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTP 176
              + + +  H       +      P
Sbjct: 149 K--VQQVIENHILKLFQSN-LVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.2 bits (181), Expect = 3e-16
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGAD-VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
           ++   A +G  + +   L  G + VN     GFT L  A  F   +   VR LL  GA  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIE--TVRFLLEWGADP 62

Query: 166 NVVDGKTGKTPLLHA 180
           +++  K  ++ L  A
Sbjct: 63  HILA-KERESALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.9 bits (214), Expect = 6e-21
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +++GA   +  +   SAL  A  KGY +IV +LLD G DVN     G T L  A    H 
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV 115

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
               V+ LL  GA   +    +G   +  A   G R V  V+ 
Sbjct: 116 K--CVKMLLESGADPTIET-DSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 85.1 bits (212), Expect = 1e-20
 Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
              +   +   IE    IN + E   + L++AA  G   +V+ LL NGAD         +
Sbjct: 12  AQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRES 71

Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           AL +AC   + D  IV+ LL  G   N  D   G TPLL+A
Sbjct: 72  ALSLACSKGYTD--IVKMLLDCGVDVNEYD-WNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 77.4 bits (192), Expect = 9e-18
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
           ++   A +G    +   ++    +N     GFT L  A         +V  LL++GA   
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA--VVEFLLQNGADPQ 63

Query: 167 VVDGKTGKTPLLHA-GKGAREVNTVLL 192
           ++  K  ++ L  A  KG  ++  +LL
Sbjct: 64  LLG-KGRESALSLACSKGYTDIVKMLL 89

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.0 bits (113), Expect = 7e-07
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
           +E GA   + ++   +++  A   GY  +  ++  +   +   
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.3 bits (93), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)

Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
              ++H            +   +      N  D + G TPL+ A
Sbjct: 3   NSLSVHQLAAQGEML--YLATRIEQENVINHTD-EEGFTPLMWA 43

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 6e-21
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
              I++      + L  AA +G  E V  LL+ GAD N  +  G   + +         +
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ--V 59

Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
              LL HGA  N  D     T  +H  A +G  +   VL 
Sbjct: 60  AELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.2 bits (186), Expect = 3e-17
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
              + + V++ +E GA  N  +      +      G  ++ +LLL +GA+ N       T
Sbjct: 21  ARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT 79

Query: 141 -ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             +H A R    D   +  L R GA  +V D   G+ P+  A  +G R++   L 
Sbjct: 80  RPVHDAAREGFLD--TLVVLHRAGARLDVCD-AWGRLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 33/151 (21%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            +A A   G  + V++L   GA  +      N+   R                       
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNA----LNRFGRRPIQVM------------------ 52

Query: 76  FLKNVRSNKYDEVKKN-IEDGACINVSSER-CGSALIYAAWKGYEEIVDLLLDNGADVNF 133
                      +V +  +  GA  N +        +  AA +G+ + + +L   GA ++ 
Sbjct: 53  ------MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 134 KSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
             A G   + +A    H D  I R L     
Sbjct: 107 CDAWGRLPVDLAEEQGHRD--IARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 27/108 (25%)

Query: 24  GDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFLKNVRS 82
           G  Q+ + L  HGA+ +      + A      H A                       R 
Sbjct: 55  GSAQVAELLLLHGAEPNC----ADPATLTRPVHDA----------------------ARE 88

Query: 83  NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
              D +      GA ++V        +  A  +G+ +I   L     D
Sbjct: 89  GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.9 bits (219), Expect = 9e-21
 Identities = 37/184 (20%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +            L   G+ +        K             +   I  L    +    
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMAS---MDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV 57

Query: 79  N--------VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
           +                ++  I  G  +N+ +    S L  A   G+   V +LL +GA 
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN 188
           VN  +A   T L  AC     D   V  LL+HGA  +V       +P+  A  +G  E  
Sbjct: 118 VNGVTADWHTPLFNACVSGSWD--CVNLLLQHGA--SVQPESDLASPIHEAARRGHVECV 173

Query: 189 TVLL 192
             L+
Sbjct: 174 NSLI 177

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           I  G  I+      G+ L  A        V  LL++GADVN +     + LH   R   +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASE 235

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHE 197
           +  +   L+  GA     +   GK P+        E     L+   E
Sbjct: 236 E--LACLLMDFGADTQAKN-AEGKRPVELV---PPESPLAQLFLERE 276

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 80.6 bits (200), Expect = 4e-18
 Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 32/166 (19%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A   G    VK L  HGAQ++               +A                  
Sbjct: 95  PLHEACLGGHLSCVKILLKHGAQVNG----VTADWHTPLFNA------------------ 132

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                 S  +D V   ++ GA +   S+   S +  AA +G+ E V+ L+  G +++ K 
Sbjct: 133 ----CVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +   T L++AC         V+KLL  GA  +V  GK   +PL   
Sbjct: 188 SHLGTPLYLACENQQRA--CVKKLLESGA--DVNQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 35/149 (23%), Positives = 52/149 (34%), Gaps = 31/149 (20%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           PI  A + G  + V  L  +G  ID     K        + A                  
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGNIDH----KISHLGTPLYLA------------------ 197

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                 + +   VKK +E GA +N    +  S L        EE+  LL+D GAD   K+
Sbjct: 198 ----CENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKN 252

Query: 136 ATGFTALHMACRFHDDDSIVRKLL-RHGA 163
           A G   + +      +  + +  L R GA
Sbjct: 253 AEGKRPVELVPP---ESPLAQLFLEREGA 278

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
            + + + V++ +++    +  +E   +AL  A       IVD L+  GA+VN   + G+T
Sbjct: 30  LTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT 89

Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA---GKGAREVNTVLLYFIHE 197
            LH A   +D   I   L++HGA         G T         +G  +     L  + +
Sbjct: 90  PLHCAASCNDTV-ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC-ATYLADVEQ 147

Query: 198 IFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDI 252
              LM +     L     +  DE+     E                 + ++   ET    
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDELSFREGESVT-------------VLRRDGPEETDWWW 194

Query: 253 AKKRG 257
           A   G
Sbjct: 195 AALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 88  VKKNIEDGACINVSSERC---GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHM 144
           ++  +        +          L+ AA  G  E+V   +    D +  +  G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 145 ACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           A    +    IV  L+  GA  N  D   G TPL  A
Sbjct: 61  AICGANYS--IVDFLITAGANVNSPD-SHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/144 (13%), Positives = 32/144 (22%), Gaps = 24/144 (16%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A    D  I   L  HGA I     S    A        E                
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE---------------- 133

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                     D      +    + + +     AL   + +  +E +         V  + 
Sbjct: 134 -------GYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRD 185

Query: 136 ATGFTALHMACRFHDDDSIVRKLL 159
               T    A     +  + R   
Sbjct: 186 GPEETDWWWAALHGQEGYVPRNYF 209

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 2e-20
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           I  GA INV +    + L  AA  G+ +IV  LL   AD+N  +  G   LH AC +  D
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
              +   L+ +GA  ++ + K G+ P+  A       +     
Sbjct: 119 Q--VAEDLVANGALVSICN-KYGEMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.5 bits (205), Expect = 1e-19
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 80  VRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
            R      V+  +++    +N   +   S L +A  +G   +V++L+  GA +N  +   
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72

Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            T LH+A    H D  IV+KLL++ A  N V+ + G  PL +A
Sbjct: 73  DTPLHLAASHGHRD--IVQKLLQYKADINAVN-EHGNVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.9 bits (175), Expect = 3e-15
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
                D V+K ++  A IN  +E     L YA + G +++ + L+ NGA V+  +  G  
Sbjct: 81  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140

Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGK 171
            +  A     +   +  +  + G   N +  K
Sbjct: 141 PVDKAKAPLREL--LRERAEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGA-DVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
            +     +G    V L LDN   D+N     GF+ LH ACR       +V  L+  GA  
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA--VVEMLIMRGARI 65

Query: 166 NVVDGKTGKTPLLH--AGKGAREVNTVLL 192
           NV++ +   TP LH  A  G R++   LL
Sbjct: 66  NVMN-RGDDTP-LHLAASHGHRDIVQKLL 92

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 16/179 (8%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            + +A ++        L        ++             S   L + +           
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDA------------SDTYLTQSQDCTPDTSHAPA 128

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
            + +  + + +E  ++ +    +   +    + L  A      E+V LL D GAD+N   
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 136 AT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
            T G T LH+A       S++  LL+ GA         G+TPL  A  +    +  +L 
Sbjct: 189 PTCGRTPLHLAVE-AQAASVLELLLKAGADPTARM-YGGRTPLGSALLRPNPILARLLR 245

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 27/169 (15%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
           +A  +G+   V++L   GA +        +        A R+               +L 
Sbjct: 51  LAAILGEASTVEKLYAAGAGVLV----AERGGHTALHLACRVRA--------HTCACVL- 97

Query: 72  LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
                L+   S+  D     +         +     A + +      E      D    +
Sbjct: 98  -----LQPRPSHPRDASDTYLTQSQDCTPDTSH-APAAVDSQPNPENEEEPRDEDWRLQL 151

Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             ++  G T LH+A    D + +VR L   GA  N  +   G+TPL  A
Sbjct: 152 EAENYDGHTPLHVAVIHKDAE-MVRLLRDAGADLNKPEPTCGRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 94  DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDD 152
               +++ ++   +AL  AA  G    V+ L   GA V      G TALH+ACR      
Sbjct: 34  GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT- 92

Query: 153 SIVRKLLRHGAYYNV------------VDGKTGKTPLLHAGKGAREVNTVLL 192
                LL+    +                  T   P     +   E      
Sbjct: 93  -CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGAD---VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 164
           AL  A    +E  +D LL   A    ++ ++  G TALH+A    +    V KL   GA 
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS-TVEKLYAAGAG 70

Query: 165 YNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             V + + G T L  A    A     VLL
Sbjct: 71  VLVAE-RGGHTALHLACRVRAHTCACVLL 98

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.9 bits (154), Expect = 8e-12
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 27/130 (20%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
           +A+   D ++V+ L++ GA ++K          R   H A                    
Sbjct: 164 VAVIHKDAEMVRLLRDAGADLNK----PEPTCGRTPLHLA-------------------- 199

Query: 78  KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
             V +     ++  ++ GA          + L  A  +    +  LL  +GA        
Sbjct: 200 --VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

Query: 138 GFTALHMACR 147
             +    +  
Sbjct: 258 KLSPCSSSGS 267

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT--GKTPLLHA 180
             + +  G TALH+A     +   +  LL   A +  +D +   G+T L  A
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.7 bits (221), Expect = 3e-20
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 5/115 (4%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                   VK  ++ GA  NVS+ +  + L  AA  G+ E+   LL N A VN K+    
Sbjct: 22  SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           T LH A R  H +  +V+ LL + A  N+     G TPL  A  +G  E    LL
Sbjct: 82  TPLHCAARIGHTN--MVKLLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALL 133

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 30/166 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A + G  ++ K L  + A+++ +  +K+       H A                  
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAKVNAK--AKDDQTP--LHCA------------------ 87

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                R    + VK  +E+ A  N+++    + L  AA +G+ E V  LL+  A     +
Sbjct: 88  ----ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             GFT LH+A ++      +   LL   A+ N    K G TPL  A
Sbjct: 144 KKGFTPLHVAAKYGKVR--VAELLLERDAHPNAAG-KNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.9 bits (219), Expect = 5e-20
 Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 28/165 (16%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A+   +  IVK L   G       ++         H A                  
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL----HIA------------------ 219

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                + N+ +  +  ++ G   N  S +  + L  AA +G+ E+V LLL   A+ N  +
Sbjct: 220 ----AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +G T LH+  +      +   L++HG   +    + G TPL  A
Sbjct: 276 KSGLTPLHLVAQ-EGHVPVADVLIKHGVMVDATT-RMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.0 bits (214), Expect = 2e-19
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 30/166 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA + G  + V  L    A          K      H A                  
Sbjct: 116 PLHIAAREGHVETVLALLEKEASQAC----MTKKGFTPLHVA------------------ 153

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                +  K    +  +E  A  N + +   + L  A      +IV LLL  G   +  +
Sbjct: 154 ----AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             G+T LH+A +    +  + R LL++G   N      G TPL  A
Sbjct: 210 WNGYTPLHIAAKQNQVE--VARSLLQYGGSANAES-VQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.6 bits (213), Expect = 3e-19
 Identities = 44/166 (26%), Positives = 65/166 (39%), Gaps = 30/166 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A  +G   IVK L   GA  +      N       H A                  
Sbjct: 17  PLHVASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMA------------------ 54

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                R+   +  K  +++ A +N  ++   + L  AA  G+  +V LLL+N A+ N  +
Sbjct: 55  ----ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             G T LH+A R  H +   V  LL   A    +  K G TPL  A
Sbjct: 111 TAGHTPLHIAAREGHVE--TVLALLEKEASQACMT-KKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 85.2 bits (212), Expect = 3e-19
 Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 29/178 (16%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A + G  ++ + L    A  +       K      H A                  
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNA----AGKNGLTPLHVA------------------ 186

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
               V  N  D VK  +  G   +  +    + L  AA +   E+   LL  G   N +S
Sbjct: 187 ----VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             G T LH+A +    + +V  LL   A  N+ + K+G TPL     +G   V  VL+
Sbjct: 243 VQGVTPLHLAAQEGHAE-MVALLLSKQANGNLGN-KSGLTPLHLVAQEGHVPVADVLI 298

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 84.5 bits (210), Expect = 6e-19
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDS 153
           G       E   + L  A++ G+  IV  LL  GA  N  +    T LHMA R  H +  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-- 61

Query: 154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           + + LL++ A  N    K  +TPL  A   G   +  +LL
Sbjct: 62  VAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLL 100

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 31/179 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA +    ++ + L  +G   +     ++       H A                  
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANA----ESVQGVTPLHLA------------------ 252

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                +    + V   +   A  N+ ++   + L   A +G+  + D+L+ +G  V+  +
Sbjct: 253 ----AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             G+T LH+A  + +    +V+ LL+H A  N    K G +PL  A  +G  ++ T+LL
Sbjct: 309 RMGYTPLHVASHYGNIK--LVKFLLQHQADVNAKT-KLGYSPLHQAAQQGHTDIVTLLL 364

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.5 bits (205), Expect = 4e-18
 Identities = 43/179 (24%), Positives = 63/179 (35%), Gaps = 31/179 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A +IG   +VK L  + A  +    +         H A                  
Sbjct: 83  PLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTP--LHIA------------------ 120

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                R    + V   +E  A     +++  + L  AA  G   + +LLL+  A  N   
Sbjct: 121 ----AREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             G T LH+A    + D  IV+ LL  G   +      G TPL  A  +   EV   LL
Sbjct: 177 KNGLTPLHVAVHHNNLD--IVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLL 232

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 37/166 (22%), Positives = 56/166 (33%), Gaps = 33/166 (19%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNL 74
           P+ +  Q G   +   L  HG  +D       +       H A                 
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDA----TTRMG-YTPLHVA----------------- 318

Query: 75  DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
                        VK  ++  A +N  ++   S L  AA +G+ +IV LLL NGA  N  
Sbjct: 319 -----SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373

Query: 135 SATGFTALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPL 177
           S+ G T L +A R      +   L       ++  V D K   +  
Sbjct: 374 SSDGTTPLAIAKRLGYIS-VTDVLKVVTDETSFVLVSD-KHRMSFP 417

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            G        +G T LH+A        IV+ LL+ GA  NV +    +TPL  A
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLP-IVKNLLQRGASPNVSN-VKVETPLHMA 54

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 39/148 (26%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +A   G+ ++VK L  H A ++     K K      H A                     
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNA----KTKLGYSPLHQA--------------------- 351

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL---LDNGADVNFKS 135
             +    D V   +++GA  N  S    + L  A   GY  + D+L    D  + V    
Sbjct: 352 -AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGA 163
               +              V ++L    
Sbjct: 411 KHRMSFPE----------TVDEILDVSE 428

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 82.1 bits (204), Expect = 7e-20
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
                  V+  +++G+  NV      + L  A   G+ ++V+LLL + A VN       +
Sbjct: 19  IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS 78

Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            LH A +  H D  IV+ LL +GA  N V+   G  P+ + 
Sbjct: 79  PLHDAAKNGHVD--IVKLLLSYGASRNAVN-IFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.4 bits (184), Expect = 6e-17
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
            L  A+ KG    V+ LL NG+D N K   G+T LH AC   H    +V  LL+H A  N
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK--VVELLLQHKALVN 70

Query: 167 VVDGKTGKTPLLHA-GKGAREVNTVLL 192
                   +PL  A   G  ++  +LL
Sbjct: 71  TTG-YQNDSPLHDAAKNGHVDIVKLLL 96

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 4e-07
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 128 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G D    +  G T LH+A    D    V  LL++G+  NV D   G TPL  A
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIP-SVEYLLQNGSDPNVKD-HAGWTPLHEA 50

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.5 bits (205), Expect = 7e-20
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           +E  A    S E     L  AA +G  E V  LL+ GA+ N  ++ G   + +       
Sbjct: 1   MEPAA--GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR 58

Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
             +   LL HGA  N  D     T  +H  A +G  +   VL 
Sbjct: 59  --VAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.5 bits (192), Expect = 6e-18
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
              + +EV+  +E GA  N  +      +      G   + +LLL +GA+ N       T
Sbjct: 21  ARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLT 79

Query: 141 -ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             +H A R    D   +  L R GA  +V D   G+ P+  A   G R+V   L 
Sbjct: 80  RPVHDAAREGFLD--TLVVLHRAGARLDVRD-AWGRLPVDLAEELGHRDVARYLR 131

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.5 bits (192), Expect = 7e-18
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 40/176 (22%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            +A A   G  + V+ L   GA  +      N    R                       
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNA----PNSYGRRPIQVM------------------ 52

Query: 76  FLKNVRSNKYDEVKKN-IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNF 133
                       V +  +  GA  N +        +  AA +G+ + + +L   GA ++ 
Sbjct: 53  ------MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

Query: 134 KSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREV 187
           + A G   + +A    H D  + R L           G  G     + A +G  ++
Sbjct: 107 RDAWGRLPVDLAEELGHRD--VARYLRAAAG------GTRGSNHARIDAAEGPSDI 154

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 31/167 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            I  A Q G  +  +EL   G  + +     +K    + H A       AIN        
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQ----PDKENVTLLHWA-------AIN-------- 52

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFK 134
                  N+ D VK  I  GA ++       S  L +A  +G+  +V  L+  GAD +  
Sbjct: 53  -------NRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 135 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
              G + +H+A +F H    IV  L+  G   +++D + G TPL+ A
Sbjct: 106 DGEGCSCIHLAAQFGHTS--IVAYLIAKGQDVDMMD-QNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 34/166 (20%), Positives = 49/166 (29%), Gaps = 27/166 (16%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNL 74
            +  A       +VK   + GA +D+              H A                 
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQ----LGGDLNSTPLHWA----------------- 83

Query: 75  DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
                 R      V + ++ GA  ++      S +  AA  G+  IV  L+  G DV+  
Sbjct: 84  -----TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138

Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
              G T L  A          R LL      N+ D     T L  A
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
           +    +     ++ A   G  E    L++ G DV        T LH A      D  +V+
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRID--LVK 59

Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
             +  GA  + + G    TPL  A
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWA 83

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.8 bits (185), Expect = 4e-16
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 32/168 (19%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A + G   +V +L  +GA         +       H A                  
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSL----IDGEGCSCIHLA------------------ 116

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADVNFK 134
                +      V   I  G  +++  +   + L++AA++ +  +   LLL     VN  
Sbjct: 117 ----AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 135 -SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
                 TALH A    +    ++  LL  GA  +  +   G++ L  A
Sbjct: 173 DKYHKNTALHWAVLAGNTT--VISLLLEAGANVDAQN-IKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 68.2 bits (168), Expect = 7e-14
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 43/157 (27%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAIND 68
            I +A Q G   IV  L   G  +D      ++        AA                 
Sbjct: 112 CIHLAAQFGHTSIVAYLIAKGQDVDM----MDQNGMTPLMWAAY---------------- 151

Query: 69  LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDN 127
                       R++  D  +  +     +N+  +   + AL +A   G   ++ LLL+ 
Sbjct: 152 ------------RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199

Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
           GA+V+ ++  G +AL +A +  +    ++  L     
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNVW--MINHLQEARQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 27/109 (24%)

Query: 27  QIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFLKNVRSNKY 85
              + L      ++      +K     A H A                      V +   
Sbjct: 157 DPTRLLLTFNVSVNL----GDKYHKNTALHWA----------------------VLAGNT 190

Query: 86  DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
             +   +E GA ++  + +  SAL  A  +    +++ L +      + 
Sbjct: 191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 1e-19
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
              +A +   P  ++ L +  A    ++ ++N       H A                  
Sbjct: 82  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA------------------ 123

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFK 134
               V +   + V+  +E GA I+    + G S LI+A       +V LLL +GA+VN +
Sbjct: 124 ----VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179

Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             +G +ALH A        +VR L+R GA  ++ +     TPL+ A
Sbjct: 180 MYSGSSALHSASGRGLLP-LVRTLVRSGADSSLKN-CHNDTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 88  VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
           V    + G  +++ +    + L  A       +V LL+  GA        G TA H+AC 
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88

Query: 148 FHDDDSIVRKLLRHGAYY----NVVDGKTGKTPLLHA 180
            H   + +R LL   A         +   G T L  A
Sbjct: 89  -HRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 34/180 (18%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +A+    P +V+ L   GA         ++     AH A                     
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMA----LDRHGQTAAHLA--------------------- 86

Query: 79  NVRSNKYDEVKKNIEDGAC----INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
                    ++  ++  A     +   +    +AL  A     +E V LLL+ GAD++  
Sbjct: 87  -CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 135 SAT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
               G + L  A   +    +V+ LL+HGA  N     +G + L  A G+G   +   L+
Sbjct: 146 DIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLV 203

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 108 ALIYAAWKGYEEIVDLLLD----NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
            L  A  +G    V  L++     G +++  +    T LH+A       S+VR L+  GA
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI-TTLPSVVRLLVTAGA 70

Query: 164 YYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
               +D + G+T    A    +      LL
Sbjct: 71  SPMALD-RHGQTAAHLACEHRSPTCLRALL 99

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 26/173 (15%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
            A      ++   L +HGA         N         A           E +       
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTL----VNCHGKSAVDMAPT--------PELRERLTYEF 177

Query: 72  LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE---EIVDLLLDNG 128
                L+  R     +VKK +          +   +AL  A    +    ++ +LLL  G
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237

Query: 129 ADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           A+VN K+    T LH+A    H+D  ++  L +HGA  N +D   G+T L  A
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHND--VMEVLHKHGAKMNALD-SLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.1 bits (209), Expect = 5e-19
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 81  RSNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
           RS   +++           + S  R  + L  AA      IV LLL +GADV+ K   G 
Sbjct: 33  RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL 92

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
             LH AC + H +  +   LL+HGA  N +D     TPL  A  K   EV ++LL
Sbjct: 93  VPLHNACSYGHYE--VTELLLKHGACVNAMD-LWQFTPLHEAASKNRVEVCSLLL 144

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.0 bits (201), Expect = 6e-18
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 31/171 (18%)

Query: 13  DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA---AARIAHSALELEERKAINDL 69
               +  A +  D   VK+         K+  S   A   A    H      +RK + +L
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH-----PKRKQVAEL 232

Query: 70  LRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
           L                     +  GA +N  ++   + L  AA + + +++++L  +GA
Sbjct: 233 L---------------------LRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +N   + G TALH A          R LL +G+  +++    G T     
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQ-TCRLLLSYGSDPSIIS-LQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 8e-16
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                 D ++   + GA +N       +AL  AA  G+ +   LLL  G+D +  S  GF
Sbjct: 255 AERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF 314

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           TA  M          V+++L        +        LL A
Sbjct: 315 TAAQMGNE------AVQQILSEST---PMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.5 bits (179), Expect = 6e-15
 Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 47/182 (25%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +A      +IV+ L  HGA +      K+K      H+A                     
Sbjct: 64  LAAGYNRVRIVQLLLQHGADVHA----KDKGGLVPLHNA--------------------- 98

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
                 Y+  +  ++ GAC+N       + L  AA K   E+  LLL +GAD    +  G
Sbjct: 99  -CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157

Query: 139 FTALHMACR--------------------FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 178
            +A+ MA                         D + V+K L           ++ +T L 
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP-QSHETALH 216

Query: 179 HA 180
            A
Sbjct: 217 CA 218

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 117 YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 176
           + +    L D  A            L  A R  +++ ++  L       +  D     TP
Sbjct: 3   FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTP 61

Query: 177 LLHA-GKGAREVNTVLL 192
           L  A G     +  +LL
Sbjct: 62  LHLAAGYNRVRIVQLLL 78

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.4 bits (204), Expect = 2e-19
 Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 44/194 (22%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCG---SALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
                Y++  +  E G     S  +       L     +   +I   L++ GAD+  ++ 
Sbjct: 14  AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK 73

Query: 137 TGFTALHMACRF-----HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVL 191
            G T      +           + +  L  GA    +  K  K  +              
Sbjct: 74  EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPYKIVVFKN----------- 121

Query: 192 LYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPG-DYNNFSLLKVTKNDAGETIL 250
                     + N      + +   K +  +       G            K+  G T L
Sbjct: 122 ----------IFNYFVDENEMIPLYKLIFSQ------SGLQLL-------IKDKWGLTAL 158

Query: 251 DIAKKRGFPLLEEL 264
           +  K+   P+  ++
Sbjct: 159 EFVKRCQKPIALKM 172

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 36/182 (19%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
             +++ ++ A  +G  +   EL   G   + +                  E R  I+  L
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE------EIVDLL 124
                                I  GA I   ++   +        G        E+  + 
Sbjct: 62  ---------------------INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDS-----IVRKLLRH-GAYYNVVDGKTGKTPLL 178
           L+ GAD+          +      +  D      + + +    G    + D K G T L 
Sbjct: 101 LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD-KWGLTALE 159

Query: 179 HA 180
             
Sbjct: 160 FV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 6/43 (13%), Positives = 15/43 (34%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
            + G  + +  +   +AL +         + ++ D     N K
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.9 bits (201), Expect = 2e-19
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 86  DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
           DEVK  +  G  +N + E     L YAA  G  EI++ LL  GAD+N       T L  A
Sbjct: 21  DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80

Query: 146 CRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREV 187
               H     V+ LL  GA   V     G T       +  + +
Sbjct: 81  VYEGHVS--CVKLLLSKGADKTVKG-PDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.9 bits (188), Expect = 1e-17
 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 163
           C    ++A   G  + V   +  G DVN     G   LH A      +  I+  LL  GA
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLE--ILEFLLLKGA 64

Query: 164 YYNVVDGKTGKTPLLHA 180
             N  D K   TPLL A
Sbjct: 65  DINAPD-KHHITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 26/133 (19%)

Query: 15  KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL 74
           K    A++ GD   VK+    G  +++ +    K      H A                 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL----HYA----------------- 47

Query: 75  DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
                    + + ++  +  GA IN   +   + L+ A ++G+   V LLL  GAD   K
Sbjct: 48  -----ADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102

Query: 135 SATGFTALHMACR 147
              G TA      
Sbjct: 103 GPDGLTAFEATDN 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 2e-19
 Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           R+   + VK  +E GA +N   +   + L  AA  G+ E+V LLL+ GADVN K   G T
Sbjct: 11  RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70

Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            LH+A R  H +  +V+ LL  GA  N  D K G+TPL  A
Sbjct: 71  PLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.3 bits (184), Expect = 4e-17
 Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
            L  AA  G+ E+V LLL+ GADVN K   G T LH+A R  H +  +V+ LL  GA  N
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGADVN 62

Query: 167 VVDGKTGKTPLLHA 180
             D K G+TPL  A
Sbjct: 63  AKD-KNGRTPLHLA 75

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.4 bits (179), Expect = 3e-16
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +E GA +N   +   + L  AA  G+ E+V LLL+ GADVN K   G T LH+A R  H 
Sbjct: 55  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114

Query: 151 DDSIVRKLLRHGAY 164
           +  +V+ LL  GAY
Sbjct: 115 E--VVKLLLEAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.8 bits (97), Expect = 7e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G T LH+A R  H +  +V+ LL  GA  N  D K G+TPL  A
Sbjct: 2   GRTPLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 42

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.4 bits (202), Expect = 4e-19
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRF-HDDD 152
              ++   E   +AL++ A  G ++ V LL + GAD++ +    G TALHMA  +   + 
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE- 124

Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
            +V  L+  GA   V D + G T L  A            +
Sbjct: 125 -VVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 7e-15
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 92  IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-H 149
            E GA ++    R G  AL  AA     E+V+ L++ GAD+  +   G TAL +A     
Sbjct: 96  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155

Query: 150 DDDSIVRKLLRHGAYYNVVD 169
                    ++ G    +  
Sbjct: 156 TT--PKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
             +     G+           ADV    +   T    A R  D+   + +LL      + 
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQ-ALSQLL-EDRDVDA 71

Query: 168 VDGKTGKTPLLHA-GKGAREVNTVLL 192
           VD + G+T LL   G G+ +   +L 
Sbjct: 72  VD-ENGRTALLFVAGLGSDKCVRLLA 96

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
           +E GA I V  ER  +AL  A            +  G  +  +  
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.9 bits (206), Expect = 9e-19
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +   IG    ++       +       K    A +  +A                     
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKV----KFDDGA-VFLAA--------------------- 47

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
              S   +EV + +E GA IN ++    +AL  A      ++V  L++NGA++N     G
Sbjct: 48  -CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +  LH A    + D  I   L+  GA+   V+   G TPL  A
Sbjct: 107 WIPLHAAASCGYLD--IAEYLISQGAHVGAVN-SEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.3 bits (194), Expect = 4e-17
 Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 25/174 (14%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSA---LELEERKA-IN 67
            A   G   I + L + GA +       N         A   A       E+  +   I 
Sbjct: 112 AAASCGYLDIAEYLISQGAHVGA----VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167

Query: 68  DLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN 127
              +         R    D  +            ++  G+AL  AA KGY E++ LL+  
Sbjct: 168 AARKEE------ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221

Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             DVN K   G+T LH A  +  ++    R L+ +      V+ K G+T    A
Sbjct: 222 RYDVNIKDYDGWTPLHAAAHWGKEE--ACRILVENLCDMEAVN-KVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 48/210 (22%), Positives = 66/210 (31%), Gaps = 56/210 (26%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
           ++D      A   GD + V  L   GA I+      N       H A        I+   
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINY----ANVDGLTALHQA-------CID--- 83

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
                       +  D VK  +E+GA IN         L  AA  GY +I + L+  GA 
Sbjct: 84  ------------DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131

Query: 131 VNFKSATGFTALHMACRF------------HDDD--------------SIVRKLLRHGAY 164
           V   ++ G T L +A                  D                 + L      
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 165 YNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
                 K+G T  LH  A KG  EV  +L+
Sbjct: 192 DVRHA-KSGGTA-LHVAAAKGYTEVLKLLI 219

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 42/170 (24%)

Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
           +N       +A          +    L     +    + +G TALH+A      + +++ 
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE-VLKL 217

Query: 158 LLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMK 217
           L++     N+ D   G TPL  A                      A+       + +  +
Sbjct: 218 LIQARYDVNIKD-YDGWTPLHAA----------------------AHWG-----KEEACR 249

Query: 218 SLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK 267
            L+          D           N  G+T  D+A +     LEEL+KK
Sbjct: 250 ILVENL------CDME-------AVNKVGQTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 157
           + ++  +         W G E  ++  +        K   G      AC   D +  V +
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTE-EVLR 58

Query: 158 LLRHGAYYNVVDGKTGKTPLLHA 180
           LL  GA  N  +   G T L  A
Sbjct: 59  LLERGADINYAN-VDGLTALHQA 80

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 79.7 bits (198), Expect = 1e-18
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +++GA +N       + L  AA  G+ EIV++LL NGADVN     G T LH+A  F H 
Sbjct: 67  LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +  IV  LL++GA  N  D K GKT    +
Sbjct: 127 E--IVEVLLKNGADVNAQD-KFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 2e-18
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           R+ + DEV+  + +GA +N       + L  AA+ G+ EIV++LL NGADVN     G T
Sbjct: 23  RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82

Query: 141 ALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            L +A  F H +  IV  LL++GA  N  D   G TPL  A
Sbjct: 83  PLRLAALFGHLE--IVEVLLKNGADVNAND-MEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 91  NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-H 149
           +   G+ +          L+ AA  G ++ V +L+ NGADVN + A+G+T LH+A    H
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59

Query: 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +  IV  LL++GA  N VD   G TPL  A
Sbjct: 60  LE--IVEVLLKNGADVNAVD-HAGMTPLRLA 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 62.0 bits (152), Expect = 4e-12
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +++GA +N +     + L  AA  G+ EIV++LL NGADVN +   G TA  ++    ++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159

Query: 151 DDSIVRKLLRH 161
           D  +   L + 
Sbjct: 160 D--LAEILQKL 168

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.4 bits (197), Expect = 1e-18
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           ++ GA  NV      S +  AA  G+ + + +L+++GADVN    TG   +H+A +  H 
Sbjct: 55  LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT 114

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
              +V   L   +  +  D   G TPL  A  +GA+++  +L 
Sbjct: 115 A--VV-SFLAAESDLHRRD-ARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.1 bits (186), Expect = 5e-17
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 81  RSNKYDEVKKNIE-DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                 EV++ +  +    +  +    +AL    + G   I   LL  GA  N +  +G 
Sbjct: 11  ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGT 69

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           + +H A R    D   ++ L+ HGA  NV D  TG  P+  A
Sbjct: 70  SPVHDAARTGFLD--TLKVLVEHGADVNVPD-GTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 104 RCGSALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
           R G  L  AA +G  +E+  LL       +  +  G TAL +         I  +LL+ G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA--IALELLKQG 58

Query: 163 AYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           A  NV D  +G +P+  A   G  +   VL+
Sbjct: 59  ASPNVQD-TSGTSPVHDAARTGFLDTLKVLV 88

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 31/171 (18%), Positives = 64/171 (37%), Gaps = 11/171 (6%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA---AARIAHSALELEERKAINDLLRL 72
            +  A+   +P+   EL      I       +               L     + +    
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR--TGLIPSNYVAEQAES 72

Query: 73  NLDFLKN-VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GAD 130
             + L    +      +++ +++   +N   +   +AL +A   G+++IV++L      +
Sbjct: 73  IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE 132

Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +N ++  G TALH A    + D  IV+ LL  GA  ++ +    K     A
Sbjct: 133 LNQQNKLGDTALHAAAWKGYAD--IVQLLLAKGARTDLRN-IEKKLAFDMA 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 93  EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
           +    +N  ++   +AL  AAWKGY +IV LLL  GA  + ++     A  MA       
Sbjct: 128 QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN-AACA 186

Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGA 184
           S+++K     A   + +          +  +  
Sbjct: 187 SLLKKKQGTDAVRTLSN-AEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 6/56 (10%), Positives = 15/56 (26%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
           +  GA  ++ +     A   A       ++       A     +A  +     +  
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.0 bits (196), Expect = 2e-18
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R+ + DEV+  + +GA          S L  AA  G+    ++LL  G   + ++    
Sbjct: 10  ARAGQDDEVRILMANGAPFTTDWLGT-SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR 68

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           T LHMA    H +  IV  LL+HGA  N  D     T L  A     +EV  +L+
Sbjct: 69  TPLHMAASEGHAN--IVEVLLKHGADVNAKD-MLKMTALHWATEHNHQEVVELLI 120

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 78.2 bits (194), Expect = 4e-18
 Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 33/168 (19%)

Query: 15  KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKN--KAAARIAHSALELEERKAINDLLRL 72
           K +  A + G    V+ L  +GA    +    +    AA+  H         +  ++L  
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGH--------FSTTEVL-- 53

Query: 73  NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
                              +  G   +  ++   + L  AA +G+  IV++LL +GADVN
Sbjct: 54  -------------------LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN 94

Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            K     TALH A   +  + +V  L+++GA  +    K  KT    +
Sbjct: 95  AKDMLKMTALHWATEHNHQE-VVELLIKYGADVHTQS-KFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 59.3 bits (145), Expect = 3e-11
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           ++ GA +N       +AL +A    ++E+V+LL+  GADV+ +S    TA  ++    ++
Sbjct: 87  LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146

Query: 152 DSIVRKLLR 160
           D +  ++L+
Sbjct: 147 D-LA-EILQ 153

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.0 bits (201), Expect = 3e-18
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
           V++   D V++ +E GA +N   E  G + L  A     E+IV+LLL +GAD   +   G
Sbjct: 13  VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG 72

Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            T   +A         +++  L  GA  N  D   G T  + A
Sbjct: 73  ATPFLLAAIAGSVK--LLKLFLSKGADVNECD-FYGFTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.6 bits (200), Expect = 4e-18
 Identities = 46/193 (23%), Positives = 76/193 (39%), Gaps = 40/193 (20%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLL 70
           ED+  +  A+Q  D  +V++L   GA ++     + +       H+A             
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVN----FQEEEGGWTPLHNA------------- 46

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
                    V+ ++ D V+  +  GA   +  +   +  + AA  G  +++ L L  GAD
Sbjct: 47  ---------VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97

Query: 131 VNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD---------GKTGKTPLLHA 180
           VN     GFTA   A  +       ++ L + GA  N+            K G T L+ A
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVK--ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155

Query: 181 -GKGAREVNTVLL 192
             KG  EV  +LL
Sbjct: 156 AEKGHVEVLKILL 168

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 4e-16
 Identities = 48/176 (27%), Positives = 71/176 (40%), Gaps = 35/176 (19%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAIND 68
           P  +A   G  +++K   + GA +++     +         AA                 
Sbjct: 75  PFLLAAIAGSVKLLKLFLSKGADVNE----CDFYGFTAFMEAAVYGK--------VKALK 122

Query: 69  LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN- 127
            L        N+R    ++ ++  + GA          +AL+ AA KG+ E++ +LLD  
Sbjct: 123 FL-YKRGANVNLRRKTKEDQERLRKGGA----------TALMDAAEKGHVEVLKILLDEM 171

Query: 128 GADVNFKSATGFTALHMACRFHDDDS---IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           GADVN     G  AL  A    DD     I   LL HGA  NV   + GKTPL+ A
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG-ERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 9e-15
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 93  EDGACINVSSERCGSALIYAAWKG----YEEIVDLLLDNGADVNFKSATGFTALHMACRF 148
           E GA +N       +ALI+A         E I  LLLD+GADVN +   G T L +A   
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 149 HDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
                +V++LL +     N  D   GKT LL A     +++  +L 
Sbjct: 230 KHLG-LVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.0 bits (162), Expect = 8e-13
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHD 150
           ++ GA +NV  ER  + LI A  K +  +V  LL+    ++N   + G TAL +A     
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265

Query: 151 DDSIVRKLLRHGAYYNVVD 169
              I   L + GA  +  D
Sbjct: 266 KK-IAELLCKRGASTDCGD 283

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.8 bits (193), Expect = 3e-18
 Identities = 42/102 (41%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R+ + DEV+  + +GA +N   E   + L  A   G+ EIV++LL NGADVN   A GF
Sbjct: 22  ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           T LH+A    H +  I   LL+HGA  N  D K GKT    +
Sbjct: 82  TPLHLAAFIGHLE--IAEVLLKHGADVNAQD-KFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 91  NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
           +   G+ +          L+ AA  G ++ V +L+ NGADVN K   G T L++A     
Sbjct: 7   HHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGH 59

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            + IV  LL++GA  N VD   G TPL  A
Sbjct: 60  LE-IVEVLLKNGADVNAVD-AIGFTPLHLA 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.6 bits (151), Expect = 2e-12
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           +++GA +N       + L  AA+ G+ EI ++LL +GADVN +   G TA  ++    ++
Sbjct: 67  LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126

Query: 152 DSIVRKLLRH 161
           D +   L + 
Sbjct: 127 D-LAEILQKL 135

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 77.0 bits (191), Expect = 4e-18
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +  GA +N  S+   + L  AA  G+ EIV LLL  GADVN +S  G T  H+A +  H 
Sbjct: 29  LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           +  IV+ L   GA  N           
Sbjct: 89  E--IVKLLDAKGADVNARS-WGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.2 bits (181), Expect = 8e-17
 Identities = 32/74 (43%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
            L  AA  G+ E V  LL  GADVN +S  G T LH+A +  H +  IV+ LL  GA  N
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAE--IVKLLLAKGADVN 69

Query: 167 VVDGKTGKTPLLHA 180
               K G TP   A
Sbjct: 70  ARS-KDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 26/125 (20%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
            A + G  + VK+L + GA ++     ++K      H A       A N           
Sbjct: 15  NAAKNGHAEEVKKLLSKGADVNA----RSKDGNTPLHLA-------AKN----------- 52

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
                  + VK  +  GA +N  S+   +    A   G+ EIV LL   GADVN +S   
Sbjct: 53  ----GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

Query: 139 FTALH 143
               H
Sbjct: 109 SHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G     K   G T LH A +  H +   V+KLL  GA  N    K G TPL  A
Sbjct: 1   GHMWGSKD--GNTPLHNAAKNGHAE--EVKKLLSKGADVNARS-KDGNTPLHLA 49

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 36/180 (20%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
              I  + G            A +      + +     A                     
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTA--------------------- 52

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                R      + + +E    ++   E   +AL++ A  G ++ V LL + GAD++ + 
Sbjct: 53  ----ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 136 A-TGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
              G TALHMA  +   +  +V  L+  GA   V D + G T L  A            +
Sbjct: 108 MRGGLTALHMAAGYVRPE--VVEALVELGADIEVED-ERGLTALELAREILKTTPKGNPM 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 92  IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
            E GA ++    R G  AL  AA     E+V+ L++ GAD+  +   G TAL +A     
Sbjct: 97  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
                   ++ G    +         +L        EV+ ++ 
Sbjct: 157 TT-PKGNPMQFGRRIGLEK----VINVLEGQVFEYAEVDEIVE 194

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.8 bits (138), Expect = 7e-10
 Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 29/116 (25%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-------------- 137
           +E GA I V  ER  +AL  A            +  G  +  +                 
Sbjct: 131 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVD 190

Query: 138 --------GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKG 183
                   G    ++  R+ D          H A     D + G    L     + 
Sbjct: 191 EIVEKRGKGKDVEYLV-RWKDGGDCEWVKGVHVAEDVAKDYEDG----LEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 6/127 (4%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           +A     P++V+ L   GA I+     +++        A E+ +     + ++       
Sbjct: 117 MAAGYVRPEVVEALVELGADIEV----EDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
               N  +       +   I     +         WK   +   +   + A+   K    
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DY 230

Query: 139 FTALHMA 145
              L  A
Sbjct: 231 EDGLEYA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.0 bits (196), Expect = 9e-18
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +  G+ IN+        L +AA+ G  +I ++LL    D++  +  G + LH+A R    
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           D   V   L   +   + + K G+TPL  A
Sbjct: 191 D--CVVLFLSRDSDVTLKN-KEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 4e-16
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
             +  +   S L  AA  G+ +I  +L+  GA+++  S    T L  A    H +   V+
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLE--AVK 61

Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA-------------GKGAREVN 188
            L++ GA  +  D   G T L  A               G  +VN
Sbjct: 62  YLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 31/167 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A +    + VK L   GA +D     K+   +   H A                  
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGALVDP----KDAEGSTCLHLA------------------ 84

Query: 76  FLKNVRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
                +   Y+ V+  + +G   +N   +   + +I+A    + ++V LLL  G+D+N +
Sbjct: 85  ----AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140

Query: 135 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
                  LH A      D  I   LL      + V+   G +PL  A
Sbjct: 141 DNEENICLHWAAFSGCVD--IAEILLAAKCDLHAVN-IHGDSPLHIA 184

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.6 bits (182), Expect = 8e-16
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           ++ GA I+  SE   + L+ AA   + E V  L+  GA V+ K A G T LH+A +  H 
Sbjct: 31  VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHY 90

Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
           +  +V+ LL +G    N  D   G TP++ A
Sbjct: 91  E--VVQYLLSNGQMDVNCQD-DGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 27/148 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+  A +     +VK L + G+ I+     ++       H A                  
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINI----RDNEENICLHWA------------------ 151

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                 S   D  +  +     ++  +    S L  AA +   + V L L   +DV  K+
Sbjct: 152 ----AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGA 163
             G T L  A   +       ++ +   
Sbjct: 208 KEGETPLQCASL-NSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +   +     + LH A      D I   L++ GA  +    +  +TPL+ A
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCS-EDQRTPLMEA 51

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 33/181 (18%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            +    +    +   E   HG     +      A    +                     
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGM--RVKFNPLPLALLLDS--------------------- 44

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                   ++D V++ I +    ++ ++   +AL  A   G+ EIV  L+  G +VN   
Sbjct: 45  ----SLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 136 ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LH--AGKGAREVNTVL 191
           + G+T LH A    +    + + L+  GA    +     +T         +G  + +  L
Sbjct: 101 SDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 192 L 192
            
Sbjct: 159 Y 159

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 24/172 (13%), Positives = 45/172 (26%), Gaps = 34/172 (19%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
            A+  G  +IVK L   G  ++      +       H A                     
Sbjct: 76  NAVCAGHTEIVKFLVQFGVNVNA----ADSDGWTPLHCA--------------------- 110

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCG---SALIYAAWKGYEEIVDLLLDNGADVNFKS 135
               N     K  +E GA +   +       +       +GY +    L      +   +
Sbjct: 111 -ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD-GKTGKTPLLHAGKGARE 186
                AL      +DD+      ++ G    ++      +     A    +E
Sbjct: 170 KGVIYALWDYEPQNDDE----LPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 74.7 bits (185), Expect = 2e-17
 Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 4/74 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 166
            L  AA  G+ E+V LLL+ GADVN K   G T LH+A R  H +  +V+ LL  GA  N
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGADVN 62

Query: 167 VVDGKTGKTPLLHA 180
             D K G+TPL  A
Sbjct: 63  AKD-KNGRTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.2 bits (181), Expect = 5e-17
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +E GA +N   +   + L  AA  G+ E+V LLL+ GADVN K   G T LH+A R  H 
Sbjct: 22  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81

Query: 151 DDSIVRKLLRHGAY 164
           +  +V+ LL  GAY
Sbjct: 82  E--VVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.6 bits (94), Expect = 9e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 138 GFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G T LH+A R  H +  +V+ LL  GA  N  D K G+TPL  A
Sbjct: 2   GRTPLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHLA 42

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
           +E  G+ L  AA +G  E +  LL N  +VN ++  G TAL +    + +  I R+LL  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE--IARRLLLR 59

Query: 162 GAYYNVVDGKTGKTPLLHA 180
           GA  ++ D +TG   +  A
Sbjct: 60  GANPDLKD-RTGFAVIHDA 77

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +  GA  ++      + +  AA  G+ + +  LL+  ADVN +   G   LH+A +  H 
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
              +V  L++H A      +   G T    A
Sbjct: 117 R--VVEFLVKHTASNVGHRN-HKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                 +++   +++   +N  +    +AL      G  EI   LL  GA+ + K  TGF
Sbjct: 13  AARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGF 71

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             +H A R    D   ++ LL   A  N+ D   G  PL  A
Sbjct: 72  AVIHDAARAGFLD--TLQTLLEFQADVNIED-NEGNLPLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 5e-12
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFKSATGFTALHMACRFHD 150
           +E  A +N+        L  AA +G+  +V+ L+ + A +V  ++  G TA  +A  +  
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149

Query: 151 DDSIVRKLLRHGA 163
           ++ +V  +  +GA
Sbjct: 150 NE-VVSLMQANGA 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +  GA  N+        L  AA     +IV +LL +G D +     G TAL+ A    + 
Sbjct: 51  LNAGALKNLLENE--FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNM 108

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
               V+  ++             KT   HA
Sbjct: 109 Q--TVKLFVKKNWRLMFYGKTGWKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 3e-15
 Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 77  LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA 136
           L  + + K  ++K  +        +     SA  YA       +V  LL+ GA  N    
Sbjct: 4   LSRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-- 60

Query: 137 TGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
                LH A         IV+ LL  G   +  D   G T L +A
Sbjct: 61  ENEFPLHQAATLEDTK--IVKILLFSGLDDSQFD-DKGNTALYYA 102

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 25/191 (13%), Positives = 48/191 (25%), Gaps = 55/191 (28%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
            A+  G+ Q VK       ++        K   + + + A                    
Sbjct: 101 YAVDSGNMQTVKLFVKKNWRLMF----YGKTGWKTSFYHA-------------------- 136

Query: 78  KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
             V  N    V   + +            S +      G+ +++ LLLD     N  ++ 
Sbjct: 137 --VMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193

Query: 138 GFT-ALHMACR-------------------------FHDDDSIVRKLLRHGAYYNVVDGK 171
            F   + +A                             DD  I + ++     Y      
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS-Y 252

Query: 172 TGKTPLLHAGK 182
           T    ++   K
Sbjct: 253 TKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 13/134 (9%), Positives = 35/134 (26%), Gaps = 32/134 (23%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            I I I+ G   ++  L ++    +           ++A                     
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA--------------------- 202

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
               + +   + ++   +    I        SA +        EI  ++++   +    S
Sbjct: 203 ----IDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDS 251

Query: 136 ATGFTALHMACRFH 149
            T    +    +  
Sbjct: 252 YTKDLDIVKNNKLD 265

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 80  VRSNKYDEVKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
            ++   + VKK     +        R  + L +AA      +V+ LL +GADV+ K   G
Sbjct: 16  AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGG 75

Query: 139 FTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
              LH AC + H +  +   L++HGA  NV D     TPL  A  KG  E+  +LL
Sbjct: 76  LVPLHNACSYGHYE--VAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLL 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.9 bits (162), Expect = 1e-13
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           ++ GA +NV+     + L  AA KG  EI  LLL +GAD   K+  G T L +      D
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTD 154

Query: 152 DSIVRKLLRHGA 163
             I   L    A
Sbjct: 155 --IQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 62.0 bits (152), Expect = 3e-12
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRF-HDDD 152
           GA  N  ++     L+ AA  G  E V  L      +         T LH A  +     
Sbjct: 1   GAMGNSEAD---RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS- 56

Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +V  LL+HGA  +  D K G  PL +A
Sbjct: 57  -VVEYLLQHGADVHAKD-KGGLVPLHNA 82

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 32/159 (20%)

Query: 36  GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKN-------------VRS 82
           G+ +DK      K     + +                NLDFL+N                
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQ---------------NLDFLRNYRDSYNRTPLMVACML 45

Query: 83  NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
              + + K +E+   +        +ALI+A       I + LL  G++VN K  +G T L
Sbjct: 46  GMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105

Query: 143 HMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             +  F + +  +   LL HGA  N  +   G+TPL+ A
Sbjct: 106 MWSIIFGYSE--MSYFLLEHGANVNDRN-LEGETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.9 bits (188), Expect = 6e-17
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           +  G+ +N       + L+++   GY E+   LL++GA+VN ++  G T L +A ++   
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           + IV+KLL  GA  +  D  TG T    A
Sbjct: 148 E-IVKKLLELGADISARD-LTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           +E GA +N  +    + LI A+  G  EIV  LL+ GAD++ +  TG TA   A  F   
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180

Query: 152 DSIVRKLLRHGA 163
           + +++       
Sbjct: 181 E-VIKIFTEVRR 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 92  IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFH 149
           ++     +N  +   G+ALI AA KG+ + V LLL++G  D++F++  G+TAL  A    
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151

Query: 150 DDDS----IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           + +     IV+ L+ +GA  ++ D  +G+T + +A
Sbjct: 152 EGNQLYQDIVKLLMENGADQSIKD-NSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
            +    ++       + L  A      EI   L+D GAD+N +++   +    A      
Sbjct: 26  QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85

Query: 151 DDSIVRKLLRHGAY-YNVVDGKTGKTPLLHA 180
           +  I+  +L+H     N  + + G   L+ A
Sbjct: 86  E--ILAYMLKHATPDLNKHN-RYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 17/96 (17%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
           + L  A  +  +++ ++L D    V+     G T L++A      +  I + L+  GA  
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIE--IAKALIDRGADI 65

Query: 166 NVVDGKTGKTPLLHAG-------------KGAREVN 188
           N+ +     +P L+AG                 ++N
Sbjct: 66  NLQN-SISDSPYLYAGAQGRTEILAYMLKHATPDLN 100

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 108 ALIYAAW-----KGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
           ALI A       + Y++IV LL++NGAD + K  +G TA+  A +    + I + L ++
Sbjct: 143 ALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE-ISKILAQY 200

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           I   A +N   +   SAL +AA     +   +LL NGA+ + ++    T L +A R    
Sbjct: 144 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 203

Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +   + LL H A  ++ D    + P   A
Sbjct: 204 E-TAKVLLDHFANRDITD-HMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 92  IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
           I + A  ++       + LI AA    E +++ L+++ ADVN     G +ALH A   ++
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 169

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
            D     LL++GA  ++ +    +TPL  A  +G+ E   VLL
Sbjct: 170 VD-AAVVLLKNGANKDMQN-NREETPLFLAAREGSYETAKVLL 210

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 92  IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
           I  GA ++  ++R G +AL  AA     +    LL+  AD N +   G T LH A    D
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-AD 101

Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
              + + L+R+ A   +      G TPL+ A
Sbjct: 102 AQGVFQILIRNRATDLDARM-HDGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.4 bits (184), Expect = 6e-16
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 28/166 (16%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
                 +   P ++ +    GA +  +     + A  +A                     
Sbjct: 26  TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA--------------------- 64

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA-DVNFK 134
                R ++ D  K+ +E  A  N+      + L  A     + +  +L+ N A D++ +
Sbjct: 65  ----ARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
              G T L +A R   +  ++  L+   A  N VD   GK+ L  A
Sbjct: 121 MHDGTTPLILAARLAVEG-MLEDLINSHADVNAVD-DLGKSALHWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.9 bits (154), Expect = 6e-12
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 29/146 (19%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
           +A ++    ++++L N  A ++      +    + A H A                    
Sbjct: 130 LAARLAVEGMLEDLINSHADVNA----VDDLG-KSALHWA-------------------- 164

Query: 78  KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
                N  D     +++GA  ++ + R  + L  AA +G  E   +LLD+ A+ +     
Sbjct: 165 --AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM 222

Query: 138 GFTALHMACRFHDDDSIVRKLLRHGA 163
                 +A      D IVR L     
Sbjct: 223 DRLPRDIAQERMHHD-IVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 3e-11
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADV-NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
                   +    ++   +  GA + N    TG TALH+A R+   D   ++LL   A  
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADA 83

Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           N+ D   G+TPL  A    A+ V  +L+
Sbjct: 84  NIQD-NMGRTPLHAAVSADAQGVFQILI 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 130 DVNFKSATGFTALHMACRF------------HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
           DVN +   GFT L +A                D  +++   +  GA  +    +TG+T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 178 LHA 180
             A
Sbjct: 62  HLA 64

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.4 bits (93), Expect = 6e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK 134
            R   Y+  K  ++  A  +++          A  + + +IV LL       +  
Sbjct: 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 92  IEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
           I + A  ++       + LI AA    E +++ L+++ ADVN     G +ALH A   ++
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            D     LL++GA  ++ +    +TPL  A
Sbjct: 138 VD-AAVVLLKNGANKDMQN-NREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 151
           I   A +N   +   SAL +AA     +   +LL NGA+ + ++    T L +A R    
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSY 171

Query: 152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +   + LL H A  ++ D    + P   A
Sbjct: 172 E-TAKVLLDHFANRDITD-HMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 92  IEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD 150
           I  GA ++  ++R G  AL  AA     +    LL+  AD N +   G T LH A    D
Sbjct: 11  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-AD 69

Query: 151 DDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 180
              + + L+R+ A   +      G TPL+ A
Sbjct: 70  AQGVFQILIRNRATDLDARM-HDGTTPLILA 99

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 27/151 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A ++    ++++L N  A ++      +       H A                  
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNA----VDDLGKSALHWA------------------ 132

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                  N  D     +++GA  ++ + R  + L  AA +G  E   +LLD+ A+ +   
Sbjct: 133 ----AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 188

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
                   +A      D IVR L  +    +
Sbjct: 189 HMDRLPRDIAQERMHHD-IVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.6 bits (138), Expect = 7e-10
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 116 GYEEIVDLLLDNGADV-NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 174
               ++   +  GA + N    TG TALH+A R+   D   ++LL   A  N+ D   G+
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD-AAKRLLEASADANIQD-NMGR 59

Query: 175 TPLLHA-GKGAREVNTVLL 192
           TPL  A    A+ V  +L+
Sbjct: 60  TPLHAAVSADAQGVFQILI 78

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R   Y+  K  ++  A  +++          A  + + +IV LL +     +       
Sbjct: 166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS------- 218

Query: 140 TALH 143
             LH
Sbjct: 219 PQLH 222

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.8 bits (182), Expect = 6e-17
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 150
           +  G+ +       G  L+ AA  G ++ V +L+ NGADV  K   G T LH+A R  H 
Sbjct: 14  VPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHL 70

Query: 151 DDSIVRKLLRHGAYYNVVDG-KTGKTPLLHAGKGARE 186
           +  +V+ LL  GA  +V    K GKT    +     E
Sbjct: 71  E--VVKLLLEAGA--DVXAQDKFGKTAFDISIDNGNE 103

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 112 AAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDG 170
            +   +      L+  G+ +    +     L  A R   DD   VR L+ +GA     D 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDD--EVRILMANGADVAAKD- 54

Query: 171 KTGKTPLLHA 180
           K G TPL  A
Sbjct: 55  KNGSTPLHLA 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
              +N  + +  + L  A  K + E+   L++NGA V  K       LH A        +
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK-L 155

Query: 155 VRKLLRHGAYYNVVDGKT--GKTPLLHA 180
           +  L   G   + V+ +   G TPL HA
Sbjct: 156 IELLCGLGK--SAVNWQDKQGWTPLFHA 181

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.7 bits (177), Expect = 4e-15
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 80  VRSNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT- 137
              N++ +V++      + +    +     L ++      EI   LL    +VN      
Sbjct: 10  CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 69

Query: 138 --GFTALHMACRF-HDDDSIVRKLLRH--GAYYNVVDGKTGKTPLLHA 180
             G+T  H+AC   + +  +V+ L         N +    G T L  A
Sbjct: 70  DSGWTPFHIACSVGNLE--VVKSLYDRPLKPDLNKIT-NQGVTCLHLA 114

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.9 bits (175), Expect = 7e-15
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 30/165 (18%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
           IA  +G+ ++VK L +   + D    +         H A                     
Sbjct: 78  IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC--LHLA--------------------- 114

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSAT 137
            V    ++  +  IE+GA + +  +     L  AA  G  ++++LL   G + VN++   
Sbjct: 115 -VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 138 GFTALHMACRF-HDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA 180
           G+T L  A    H D      L+ ++GA Y++VD   G      A
Sbjct: 174 GWTPLFHALAEGHGD--AAVLLVEKYGAEYDLVD-NKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 108 ALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
            L  A  +  + ++ +LL    + +  K   G   LH +  F   + I   LL      N
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE-ITSFLLSKMENVN 63

Query: 167 VVDGKT--GKTPLLHA 180
           + D     G TP   A
Sbjct: 64  LDDYPDDSGWTPFHIA 79

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 108 ALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
            L +A  +G+ +   LL++  GA+ +     G  A  +A      + + +  L +
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
               LH AC  ++   +   L    +     D + G+ PL  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWS 43

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 20/167 (11%), Positives = 41/167 (24%), Gaps = 31/167 (18%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNK-------AAARIAHSALELEERKAINDLLR 71
            AI I    +       G  ++     ++         + R A           +   L 
Sbjct: 217 WAILINWEDVAMRFVEMGIDVNM----EDNEHTVPLYLSVRAAM--------VLLTKEL- 263

Query: 72  LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
                L+            +  +G  +          +  AA    +E++ LL +   +V
Sbjct: 264 -----LQKTDVFLIQACPYH--NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

Query: 132 NFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
                TG        +       + R  L   A       ++     
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPA--VKRMKLAPSAPVRTRS-RSRARSS 360

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-----NGADVNFKSATGFTALHMAC 146
           ++ GA      +   + L+ A      E +DL++D     +   +++ +  G + LH A 
Sbjct: 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI 219

Query: 147 RF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
               +D  +  + +  G   N+ D      PL  +
Sbjct: 220 LINWED--VAMRFVEMGIDVNMED-NEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
              ++ ++++  S L +A    +E++    ++ G DVN +       L+++ R      +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL-L 259

Query: 155 VRKLLRHGAYYNVVD--GKTGKTPLLHAGKG 183
            ++LL+    + +       G T L      
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 98  INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVR 156
              S +     +  AA KG  + V  L++ G     ++  G TALH+AC+F   D    +
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD--TAK 70

Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
            L   G    V     G+ P+  A
Sbjct: 71  YLASVGE---VHSLWHGQKPIHLA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
            R  + DEV++ IE G    + +    +AL  A   G  +    L   G   +     G 
Sbjct: 28  ARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQ 85

Query: 140 TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN 188
             +H+A      D  +V  L+           + G+ P         REVN
Sbjct: 86  KPIHLAVMANKTD--LVVALVEGAK-------ERGQMPESLLNECDEREVN 127

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.9 bits (172), Expect = 6e-14
 Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 51/187 (27%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            I +A + G    V+ L   G         +N+      H A                  
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSPTI----QNRFGCTALHLA------------------ 60

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD----- 130
                +    D  K     G   ++   +    +  A      ++V  L++   +     
Sbjct: 61  ----CKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAKERGQMP 114

Query: 131 ----------------VNFKSATGFTALHMACRFHDDDS-IVRKLLRHGAYYNVVDGKTG 173
                            + K   G TALH       +   +++ L++ GA     D K  
Sbjct: 115 ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-KAD 173

Query: 174 KTPLLHA 180
           +TPL+ A
Sbjct: 174 ETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 98  INVSSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSI 154
            +V   +  +AL +    G  Y E++ +L+  GA    K     T L  A  F + +   
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE--A 188

Query: 155 VRKLL-----RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           +  ++     +     +  + K G + L  A      +V    +
Sbjct: 189 LDLMMDTVPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFV 231

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 123 LLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           +      +           +H+A R    D   VR+L+  G    + + + G T L  A
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTD--EVRRLIETGVSPTIQN-RFGCTALHLA 60

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 78  KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
              ++   + +++   D A +N  +    + L  A      EI + LL  G D   +   
Sbjct: 18  HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR 77

Query: 138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG-----KTGKTPLLHA 180
           G T LH+AC        V  L +     ++          G T L  A
Sbjct: 78  GNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 91  NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFH 149
                + +  ++    + L  A+  GY  IV+LL+  GADVN +    G TALH+A    
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162

Query: 150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
           + D +V  LL+ GA  N V    G +P      G+ +  +   L 
Sbjct: 163 NPD-LVSLLLKCGADVNRVT-YQGYSP-YQLTWGRPSTRIQQQLG 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 27/162 (16%)

Query: 19  IAIQIGDPQIVKELQNHGA--QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF 76
           +A + G    V  L        +   + + N       H A                   
Sbjct: 84  LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA------------------- 124

Query: 77  LKNVRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                      V+  +  GA +N      G +AL  A      ++V LLL  GADVN  +
Sbjct: 125 ---SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181

Query: 136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 177
             G++   +         I ++L +       +     +   
Sbjct: 182 YQGYSPYQLTWGRPSTR-IQQQLGQLTLENLQML-PESEDEE 221

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 107 SALIYAAWKGY----EEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
           S L  A          E++  +  + A +NF++    T LH+A    +   I   LL  G
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQPEIAEALLGAG 68

Query: 163 AYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 192
               + D   G TP LH    +G      VL 
Sbjct: 69  CDPELRD-FRGNTP-LHLACEQGCLASVGVLT 98

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 27/128 (21%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA-HSALELEERKAINDLLRLNLDFL 77
           +A   G   IV+ L + GA ++     +     R A H A                    
Sbjct: 123 LASIHGYLGIVELLVSLGADVNA----QEPCNGRTALHLA-------------------- 158

Query: 78  KNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
             V     D V   ++ GA +N  + +  S       +    I   L     +       
Sbjct: 159 --VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216

Query: 138 GFTALHMA 145
                   
Sbjct: 217 SEDEESYD 224

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNK--AAARIAHSALELEERKAINDLLRLN 73
            +      G   I + +      I    +++      A  +            ++ L ++
Sbjct: 97  KLHTEAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSS--------AEKSEDLIVH 147

Query: 74  LDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF 133
                        E K+ I  GA +N       + L+ A       +V  L+  GAD   
Sbjct: 148 -------------EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 194

Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRH---GAYYNVVDGKTGKTPLLHA 180
            + +  +ALH A   + D  ++  +L           +D + G T L+  
Sbjct: 195 YNKSERSALHQAAA-NRDFGMMVYMLNSTKLKGDIEELD-RNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 92  IEDGACINVSSERCGS--------ALIYAAWKGYEEIVDLLL-DNGADVNFKSATGFTAL 142
           +E GA ++                AL YAA      IV  L+ + G++ + +   G T +
Sbjct: 258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317

Query: 143 HMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +A +    +  +V  L++ GA    VD  T  T    A
Sbjct: 318 MLAAQEGRIE--VVMYLIQQGASVEAVD-ATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
                   G + + D    N              LH          I   + R     N+
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYA--ITEPITRESV--NI 119

Query: 168 VDGKTGKTPLLHA-GKGAREVNTVLL 192
           +D +  +T L       + E +  L+
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLI 145

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 25/187 (13%), Positives = 49/187 (26%), Gaps = 41/187 (21%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P       G+  +      +     +        +    H+                   
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTE----PEPESPIKLHTE------------------ 101

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL--------DN 127
                 +  Y   +    +   I        + L + A     E  + L+          
Sbjct: 102 -----AAGSYAITEPITRESVNIIDPRHNR-TVLHWIASNSSAEKSEDLIVHEAKECIAA 155

Query: 128 GADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR 185
           GADVN       T L +A         +V  L++ GA   + + K+ ++ L  A      
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRR--LVAYLMKAGADPTIYN-KSERSALHQAAANRDF 212

Query: 186 EVNTVLL 192
            +   +L
Sbjct: 213 GMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 93  EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
           E G+  +   E   + ++ AA +G  E+V  L+  GA V    AT  TA  +A   +  +
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN 360

Query: 153 SIVRKLLRHGA 163
            IV    R   
Sbjct: 361 -IVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADV 131
            +  + + V   I+ GA +        +A   A    +  IVD+      + 
Sbjct: 321 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 82  SNKYDEVKKN-IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
           S K DE+K+  + D +    + +   +AL +A   G+ EIV+ LL  G  VN K   G++
Sbjct: 16  SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75

Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLLYFIHEIF 199
            LH+A      D IV+ LL  GA+ N V+ + G TPL +A  K   E+  +LL       
Sbjct: 76  PLHIAA-SAGXDEIVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 200 KLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249
                + T +        L  +  L+             N  L      +  E  
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 165
                A     +E+ + +L + +          TALH AC   H +  IV  LL+ G   
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE--IVEFLLQLGVPV 66

Query: 166 NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSL 219
           N  D   G +PL  A   G  E+   LL     +  +  N  T +      +R +    L
Sbjct: 67  NDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 220 ILEGTKEFGPGDYNNFSLLKVTKNDAGETI 249
           +  G        Y+  ++ +       + +
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMV 155

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 18/163 (11%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ IA   G  +IVK L   GA ++      N+      H A      +    LL    +
Sbjct: 76  PLHIAASAGXDEIVKALLVKGAHVNA----VNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131

Query: 76  -----------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
                        +         V   +   A  N+      + L  A  +   E    L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
           +  GA +  ++    T L +A        ++ K L  G   ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVAKGGLG---LILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 32/209 (15%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
            A   G  +IV+ L   G  ++     K+ A     H A                     
Sbjct: 46  WACSAGHTEIVEFLLQLGVPVND----KDDAGWSPLHIA--------------------- 80

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG 138
              +   + VK  +  GA +N  ++   + L YAA K   EI  +LL+ GA+ + K    
Sbjct: 81  -ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 139 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYFIHE 197
            TA+H A    +   +V  LL + A  N+ D   G TPL  A      E    L+     
Sbjct: 140 ATAMHRAAAKGNLK-MVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS 197

Query: 198 IFKLMANNDTTIL---DRLDEMKSLILEG 223
           I+       T +      L  +   + EG
Sbjct: 198 IYIENKEEKTPLQVAKGGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 17/132 (12%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
               P+  A      +I   L   GA  D     K+   A   H A      K ++ LL 
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDA----KDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 72  LNLD-----------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEI 120
                                  + +E K  +  GA I + ++   + L  A   G   +
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGL 218

Query: 121 VDLLLDNGADVN 132
           +   L  G + +
Sbjct: 219 ILKRLAEGEEAS 230

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.0 bits (176), Expect = 8e-15
 Identities = 31/226 (13%), Positives = 64/226 (28%), Gaps = 19/226 (8%)

Query: 45  SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSER 104
            +    +    S+    E  + N   +          S   +           +N+  + 
Sbjct: 75  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVS-----FDSLLQEVNDAFPNTQLNLNIPVDE 129

Query: 105 CG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH--DDDSIVRKLLRH 161
            G + L +       E+V  L+ +G++  +    G + L  A +     D      LL +
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189

Query: 162 GAYY-NVVDGKTGKTPLLHAGKGAREVNT--VLLYFIHEIFKLMANNDTTILDRLDEMKS 218
                 + D    +T L H    +          Y++  +   +       +      K 
Sbjct: 190 LYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 219 LILEGTKEFGPGDYNNFSLLKV-------TKNDAGETILDIAKKRG 257
                              LK         ++  G+T L+IA + G
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 41/192 (21%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKE-----------IYSKNKAAARIA------------- 54
               I + ++VK L  HG+                + S N   +                
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

Query: 55  ---------HSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERC 105
                    H  +        +   +  LD L          VKK            E  
Sbjct: 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW------IVKKQNRPIQSGTNEKESK 250

Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
            +           E +DL       +N + + G T L++A R  +   IV  LL +GA  
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS-IVDALLDYGADP 309

Query: 166 NVVDGKTGKTPL 177
            + + K+G  P+
Sbjct: 310 FIAN-KSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 22/118 (18%)

Query: 28  IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE 87
           ++  +     +  +   ++ ++     +   +    + ++                    
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK------------------ 269

Query: 88  VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA 145
                     +N       + L  AA  G   IVD LLD GAD    + +G   +   
Sbjct: 270 ----WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD---SIVRKLLRHGAY 164
            L +AA  G EEIV LL+++GAD+  + + G T LH+     +      +   LL +   
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 165 YNVVDG-----KTGKTPLLHAGK 182
            ++          G TP   AG 
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGV 206

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 23/86 (26%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFK-------------SATGFTALHMACRFHDDDSI 154
           AL  A       +V  LL  GA V+ +                G   L  A     ++ I
Sbjct: 78  ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE-I 136

Query: 155 VRKLLRHGAYYNVVDGKTGKTPLLHA 180
           VR L+ HGA     D   G T L   
Sbjct: 137 VRLLIEHGADIRAQD-SLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 107 SALIYAAWKG-YEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA-- 163
           S L+ AA +   + +  LL   G +V+ + A G TALH+A   +D+      L+      
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA-LYDNLEAAMVLMEAAPEL 63

Query: 164 ---YYNVVDGKTGKTPLLHA 180
                       G+T L  A
Sbjct: 64  VFEPMTSEL-YEGQTALHIA 82

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 13  DHKPIAIAIQIGDPQIVKEL----QNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND 68
           D   +   +  G P+ +  L    + +   +    Y++          A+ L  +  +N 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNA 60

Query: 69  LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
            +   L   K       D         A       +  SAL  A  K   + V LL++NG
Sbjct: 61  CIMPLLQIDK-------DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113

Query: 129 ADVNFKSATGF-------------TALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKT-- 172
           ADV+ ++   F               L +A      D  +V  LL +      ++     
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD--VVTYLLENPHQPASLEATDSL 171

Query: 173 GKTPL 177
           G T L
Sbjct: 172 GNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 32/190 (16%), Positives = 48/190 (25%), Gaps = 65/190 (34%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
           Y+ H  + IAI+    Q VK L  +GA +                               
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHL----------------------------- 118

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-- 128
                  +                G             L  AA     ++V  LL+N   
Sbjct: 119 -------RACGRFFQKHQGTCFYFGE----------LPLSLAACTKQWDVVTYLLENPHQ 161

Query: 129 -ADVNFKSATGFTALHMACRFHDDD---------------SIVRKLLRHGAYYNVVDGKT 172
            A +    + G T LH      D+                 +  +L        + +   
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN-HQ 220

Query: 173 GKTPLLHAGK 182
           G TPL  A K
Sbjct: 221 GLTPLKLAAK 230

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+++A       +V  L  +  Q    + + +     + H+ + + +    N  L ++  
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQ-PASLEATDSLGNTVLHALVMIADNSPENSALVIH-- 195

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
               +         +         +S+ +  + L  AA +G  EI   +L       
Sbjct: 196 ----MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 46/265 (17%), Positives = 83/265 (31%), Gaps = 53/265 (20%)

Query: 13  DHKPIAIAIQIGDPQ----IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAIND 68
           +   +   +  G P     ++  L  H  ++  E + +          AL L      ND
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL-LNLSAGRND 63

Query: 69  LLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
            + + LD  +    N  + +     D      +      AL  A  +  +  V+LL++ G
Sbjct: 64  TIPILLDIAEKT-GNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVELLVEKG 116

Query: 129 ADVNFK--------------SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT-- 172
           ADV+ +                 G   L +A   +    IV  L  +G     +  +   
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH-IVHYLTENGHKQADLRRQDSR 175

Query: 173 GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232
           G T L                        +A+N       + +M  L+L           
Sbjct: 176 GNTVLHAL-------------------VAIADNTRENTKFVTKMYDLLLIKCA-----KL 211

Query: 233 NNFSLLKVTKNDAGETILDIAKKRG 257
              + L+   N+ G + L +A K G
Sbjct: 212 FPDTNLEALLNNDGLSPLMMAAKTG 236

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 11/129 (8%)

Query: 61  EERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCG------SALIYAAW 114
            E +               + +     V +   +G                   L  A  
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199

Query: 115 KGYE---EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 171
              +    +VD ++ NG  ++ K+A G TALH A   ++    ++ LL+  A    V+ +
Sbjct: 200 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVN-E 257

Query: 172 TGKTPLLHA 180
            G+T L  A
Sbjct: 258 AGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
           G  ++  +    +AL YAA     + + LLL   A V   +  G TAL +A + H  +  
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE-C 274

Query: 155 VRKLLR 160
              LL 
Sbjct: 275 EE-LLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 49/152 (32%)

Query: 121 VDLLLDNGADVNFK------SATGFTALHMACRFHDDDS--IVRKLLRHGAYYNVVDGKT 172
           V     NG D           A     LH+A +  +  S  +V  ++++G + +      
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD- 225

Query: 173 GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY 232
           G T L +A                            + ++ D +K L+            
Sbjct: 226 GNTALHYA---------------------------ALYNQPDCLKLLLKGR------ALV 252

Query: 233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEEL 264
                   T N+AGET LDIA+K+     EEL
Sbjct: 253 G-------TVNEAGETALDIARKKHHKECEEL 277

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 35/207 (16%), Positives = 63/207 (30%), Gaps = 54/207 (26%)

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCG-----------SALIYAAWKGYEEIVDLLLDN 127
           N+ + + D +   ++     +   +              +AL  A  +    +V LL++N
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 128 GADVNFKS--------------ATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKT 172
           GADV   +                G   L +A         IV+ LL++      +  + 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA--IVKFLLQNSWQPADISARD 181

Query: 173 --GKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPG 230
             G T L    +                   +A+N       +  M + IL         
Sbjct: 182 SVGNTVLHALVE-------------------VADNTVDNTKFVTSMYNEILILGA----- 217

Query: 231 DYNNFSLLKVTKNDAGETILDIAKKRG 257
             +    L+   N  G T L +A   G
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSG 244

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+++A       IVK L  +  Q   +I +++     + H+ +E      + D    N  
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQ-PADISARDSVGNTVLHALVE------VADNTVDNTK 203

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
           F+ ++ +       K         +++ +  + L  AA  G   ++  +L          
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258

Query: 136 ATGFTALHMACR 147
                  H A  
Sbjct: 259 --EPECRHAAAH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 100 VSSERCGSALIYA---AWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 156
              E   +AL  A     +    IVD L+ N  +++ ++  G TALH  C   D+   ++
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL-TDNAECLK 222

Query: 157 KLLRHGAYYNVVDGKTGKTPLLHA 180
            LLR  A   + +   G+TPL  A
Sbjct: 223 LLLRGKASIEIANES-GETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR 147
           +++   ++  + +  +AL Y       E + LLL   A +   + +G T L +A R
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.0 bits (142), Expect = 3e-10
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 95  GACIN--VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
           GA +N     +   + LI A         + LL NGA+VN   + G   LH A       
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI-LGHT 281

Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            +    L+ GA     D   G+ PL  A
Sbjct: 282 GLACLFLKRGADLGARD-SEGRDPLTIA 308

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
           GA +N +       L +A   G+  +  L L  GAD+  + + G   L +A    + D +
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

Query: 155 VRKLLRHGAYYN 166
              LLR      
Sbjct: 318 --TLLRLAKMRE 327

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 16/144 (11%), Positives = 38/144 (26%), Gaps = 5/144 (3%)

Query: 39  IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACI 98
               I +   +   +++            ++ +     L    ++     K+   D    
Sbjct: 30  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQ-VRQLLCLYYAHYNRNAKQLWSDAHKK 88

Query: 99  NVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRK 157
            + SE               + + LLL +   V    A  + A  +A    H    ++ +
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLH--VLNR 146

Query: 158 LLRHGAYYNVVDGKT-GKTPLLHA 180
           L        +   +         A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 88  VKKNIEDGACINVSSERCG--SALIYAAWKGYEEIVDLLLDNGADVNFK--SATGFTALH 143
           + +  E      ++  +     A   AA  G+  +++ L +           A  + A  
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFR 203

Query: 144 MACRFHDDDSIVRKLLRHGAYYNVVD 169
            A       +++  LL         +
Sbjct: 204 WAAVGRGHHNVINFLLDCPVMLAYAE 229

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 17/157 (10%), Positives = 43/157 (27%), Gaps = 6/157 (3%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
                     + G+  +   +  H  ++ +   +   +        +   E      +LR
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLR 283

Query: 72  LNLD--FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGA 129
             +       +   ++      I+  A            L  A   G +    LLL   +
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343

Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
            +    A  +   ++       D +    L H  +++
Sbjct: 344 VLALTKANNY---YINETGGRLD-LRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 33/196 (16%), Positives = 57/196 (29%), Gaps = 33/196 (16%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQID-KEIYSKNKAAARIAHSALE---LEERKAIN 67
           E++    +A + G   ++  L           I ++N  A R A  A+          IN
Sbjct: 162 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA--AVGRGHHN---VIN 216

Query: 68  DLLRLNLDF---LKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
            LL   +       +        V   I          +    A   +   G  ++V   
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL---KEMHDAFKLSNPDGVFDLVT-- 271

Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDS--IVRKL-----LRHGAYYNVVDGKTGKTPL 177
                    +   GF  L    R +D+     +R L     ++  A    + G      L
Sbjct: 272 -------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELL 323

Query: 178 LHA-GKGAREVNTVLL 192
             A   G +    +LL
Sbjct: 324 RLALRLGNQGACALLL 339

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 44  YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSE 103
           Y +++ A R       L       DLL +   F       +          G       E
Sbjct: 120 YVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQ-------PLPGPDAQAPEE 172

Query: 104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 163
                 +  A +    +VD ++ NG  ++ K+A G TALH A   ++    ++ LL+  A
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRA 231

Query: 164 YYNVVDGKTGKTPLLHA 180
               V+ + G+T L  A
Sbjct: 232 LVGTVN-EAGETALDIA 247

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 58/263 (22%)

Query: 21  IQIGDPQIVKELQ-NHGAQIDKEIYSK-----------NKAAARIAHSALELEE----RK 64
           + + +   V          + K I SK             +        L  ++    +K
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 65  AINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
            + ++LR+N  FL +                    + +E+   +++    + Y E  D L
Sbjct: 82  FVEEVLRINYKFLMS-------------------PIKTEQRQPSMMT---RMYIEQRDRL 119

Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKL--LRHGAYYNVVDGK--TGKTPLLHA 180
             N   V       F   ++  R      + + L  LR      ++DG   +GKT +  A
Sbjct: 120 Y-NDNQV-------FAKYNV-SRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWV--A 167

Query: 181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV 240
                    V      +IF L   N  +    L+ ++ L+ +    +     ++ S +K+
Sbjct: 168 LDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHSSNIKL 225

Query: 241 TKNDAGETILDIAKKRGFP--LL 261
             +     +  + K + +   LL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLL 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 62/272 (22%)

Query: 21  IQIG----DPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN--- 73
           + +        +++ LQ    QID    S++  ++ I      ++    +  LL+     
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYE 244

Query: 74  --LDFLKNVRSNKYDEVKKNIE--DGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
             L  L NV++       K     + +C I +++ R            ++++ D      
Sbjct: 245 NCLLVLLNVQN------AKAWNAFNLSCKILLTT-R------------FKQVTD------ 279

Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN 188
             ++  + T  +  H +     D+   + LL        +D +    P           N
Sbjct: 280 -FLSAATTTHISLDHHSMTLTPDEV--KSLLL-----KYLDCRPQDLPRE-----VLTTN 326

Query: 189 TVLLYFIHEIFKLMAN-NDTTILDRLDEMKSLILEGTKEFGPGDY-NNFSLLKVTKNDAG 246
              L  I E  +      D       D++ ++I        P +Y   F  L V    A 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 247 --ETILDI---AKKRGFP--LLEELEKK-LAE 270
               +L +      +     ++ +L K  L E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-42  Score=278.21  Aligned_cols=215  Identities=24%  Similarity=0.256  Sum_probs=168.7

Q ss_pred             CCCCCCCChHHHHHHhC-------------CHHHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012           8 YVPYEDHKPIAIAIQIG-------------DPQIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLN   73 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g-------------~~~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g   73 (271)
                      ..|.+|.||||+|+..|             +.+++++|++.|++++. .+..|.||    ||+|+..|+.+++++|+++|
T Consensus         5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA----LHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             -----------------------------------------------CCCTTSCCH----HHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcH----HHHHHHcCCHHHHHHHHHcC
Confidence            35788999999999987             89999999999999865 47899999    99999999999999999998


Q ss_pred             cHH----------HHHHHhcChHH-HHHHHhcCC-CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012          74 LDF----------LKNVRSNKYDE-VKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA  141 (271)
Q Consensus        74 ~~~----------l~~a~~~~~~~-~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  141 (271)
                      +++          ||+|+..++.+ +++|++.+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  160 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA  160 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            765          99999999999 999999987 889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHH
Q psy8012         142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLI  220 (271)
Q Consensus       142 l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~  220 (271)
                      ||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++                     
T Consensus       161 L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---------------------  217 (253)
T 1yyh_A          161 LHWAAAV-NNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD---------------------  217 (253)
T ss_dssp             HHHHHHH-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------------------
T ss_pred             HHHHHHc-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCcc---------------------
Confidence            9999998 999999999999999999998 899999999 9999999999999998854                     


Q ss_pred             hhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         221 LEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                                          .+|..|.||+++|+++|+.+++++|.+.+
T Consensus       218 --------------------~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          218 --------------------ITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             --------------------CCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             --------------------ccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence                                78999999999999999999999998754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-41  Score=291.15  Aligned_cols=242  Identities=21%  Similarity=0.253  Sum_probs=212.0

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||    ||+|+..++.+++++|+++|+++          |+
T Consensus       142 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  217 (437)
T 1n11_A          142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP----LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH  217 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCH----HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            45678888888888888888888888888888888888888    88888888888888888876543          89


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  157 (271)
                      +|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++
T Consensus       218 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~  296 (437)
T 1n11_A          218 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADV  296 (437)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHH
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCC
Q psy8012         158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGD  231 (271)
Q Consensus       158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  231 (271)
                      |+++|++++.++. .|.||||+| ..++.+++++|+++|++++..+..+.++..     ...+++++|+..|++      
T Consensus       297 Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~------  369 (437)
T 1n11_A          297 LIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS------  369 (437)
T ss_dssp             HHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             HHhCCccCCCCCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC------
Confidence            9999999999998 899999999 999999999999999998866555544332     458899999999998      


Q ss_pred             CCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         232 YNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       232 ~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                             ++.+|..|.||+++|++.|+.+++++|+...
T Consensus       370 -------~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~  400 (437)
T 1n11_A          370 -------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVT  400 (437)
T ss_dssp             -------SCCCCSSSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred             -------CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcc
Confidence                   6789999999999999999999999998753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-41  Score=273.13  Aligned_cols=238  Identities=24%  Similarity=0.253  Sum_probs=211.3

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCch-hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKE-IYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNV   80 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a   80 (271)
                      +|.||||.|++.|+.+++++|++.|++++.. +..|.||    ||+|+..|+.+++++|+++|+++          ||+|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP----LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcH----HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            5789999999999999999999999999877 7779999    99999999999999999987654          9999


Q ss_pred             HhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhC
Q psy8012          81 RSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACRFH  149 (271)
Q Consensus        81 ~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~  149 (271)
                      +..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..          +..|.||||+|+.. 
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-  158 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-  158 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH-
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc-
Confidence            9999999 99999999999999999999999999999999999999999988876          67789999999998 


Q ss_pred             CCHHHHHHHHhC-CCCccccCCCCCCCHHHHH-hcCC----chHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHH
Q psy8012         150 DDDSIVRKLLRH-GAYYNVVDGKTGKTPLLHA-GKGA----REVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKS  218 (271)
Q Consensus       150 ~~~~~~~~Ll~~-g~~~~~~~~~~g~tpL~~A-~~~~----~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~  218 (271)
                      ++.+++++|++. |++++..+. .|.||||+| ..++    .+++++|+++|++++..+..+.++..     ...+++++
T Consensus       159 ~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          159 GHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             TCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCCccCC-CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            999999999987 999999998 899999999 8888    88999999999998766555444332     45888999


Q ss_pred             HHh-hccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         219 LIL-EGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       219 l~~-~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      |+. .|++             ++.+|..|.||||+|++.|+.+++++|.+.
T Consensus       238 Ll~~~g~~-------------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          238 LLEQEHIE-------------INDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             HHHSSSCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCC-------------ccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence            998 7777             678999999999999999999999999874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.5e-42  Score=271.70  Aligned_cols=215  Identities=22%  Similarity=0.205  Sum_probs=196.1

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHH----CCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQN----HGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      ..|.+|.||||+||+.|+.+++++|++    .|.+++..+..|.||    ||+|+..|+.+++++|+++|+++       
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   79 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP----LHLAVITTLPSVVRLLVTAGASPMALDRHG   79 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH----HHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            468899999999999999999999997    799999999999999    99999999999999999998765       


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCC----CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHH
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGA----CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACR  147 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~  147 (271)
                         ||+|+..++.+ +++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence               99999999999 999999987    788889999999999999999999999999999999888 789999999999


Q ss_pred             hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012         148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE  226 (271)
Q Consensus       148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  226 (271)
                      . ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++                           
T Consensus       160 ~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------------------  210 (241)
T 1k1a_A          160 N-NSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSS---------------------------  210 (241)
T ss_dssp             T-TCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------------------------
T ss_pred             c-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCC---------------------------
Confidence            8 999999999999999999998 899999999 9999999999999998854                           


Q ss_pred             CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                                    .+|..|.||+|+|+++|+.++++.|.+.+
T Consensus       211 --------------~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          211 --------------LKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             --------------CCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             --------------CcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence                          78999999999999999999999988765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.7e-41  Score=265.83  Aligned_cols=208  Identities=22%  Similarity=0.223  Sum_probs=195.5

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L   77 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l   77 (271)
                      ..+.+|.||||+|+..|+.+++++|+++|++++..+..|.||    ||+|+..|+.+++++|++.|+++          |
T Consensus         6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP----LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL   81 (237)
T ss_dssp             CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH
T ss_pred             cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCH----HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence            457889999999999999999999999999999999999999    99999999999999999987654          9


Q ss_pred             HHHHhcChHH-HHHHHhcC-CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDG-ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ++|+..++.+ +++|++.+ .+++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~  160 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIA  160 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC-CCHHHH
Confidence            9999999999 99999998 88999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|++.|++++..+. .|.||||+| ..++.+++++|+++|++++                                   
T Consensus       161 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~~-----------------------------------  204 (237)
T 3b7b_A          161 EILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSDVT-----------------------------------  204 (237)
T ss_dssp             HHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCTT-----------------------------------
T ss_pred             HHHHHcCCCCCCcCC-CCCCHHHHHHHhCCHhHHHHHHHcCCCCC-----------------------------------
Confidence            999999999999998 899999999 9999999999999998854                                   


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLE  262 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~  262 (271)
                            .+|..|.||||+|+++|+.+.+
T Consensus       205 ------~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          205 ------LKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             ------CCCTTSCCHHHHSCTTCHHHHH
T ss_pred             ------ccCCCCCCHHHHHHHHHHHHHH
Confidence                  7899999999999999988543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.3e-41  Score=287.65  Aligned_cols=253  Identities=22%  Similarity=0.195  Sum_probs=180.4

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||    ||+|+..|+.+++++|+++|+++          |+
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP----LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH----HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            46678888888888888888888888888888888888888    88888888888888888877543          88


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  157 (271)
                      +|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.+++.+..+..|.||||+|+.. ++.+++++
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~  164 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAEL  164 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHc-CCHHHHHH
Confidence            888888888 8888888888888888888888888888888888888888887777777888888888887 88888888


Q ss_pred             HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCC
Q psy8012         158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGD  231 (271)
Q Consensus       158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  231 (271)
                      |+++|++++..+. .|.||||+| ..++.+++++|+++|++++.....+.++..     ..++++++|+..|++......
T Consensus       165 Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  243 (437)
T 1n11_A          165 LLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV  243 (437)
T ss_dssp             HHHTTCCTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            8888888887777 788888888 778888888888877766543333322211     346666777666665211100


Q ss_pred             CCC--------------------cccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         232 YNN--------------------FSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       232 ~~~--------------------~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      ...                    ....++.+|..|.||||+|++.|+.+++++|-+
T Consensus       244 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  299 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  299 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            000                    000134555566666666666666666655554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.7e-41  Score=283.78  Aligned_cols=214  Identities=16%  Similarity=0.131  Sum_probs=201.9

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc--------HHHHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL--------DFLKN   79 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~--------~~l~~   79 (271)
                      ..|.+|.||||+||..|+.+++++|+++|++++.++..|.||    ||+|+..|+.+++++|+++|+        .+|++
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~   90 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA----LHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL   90 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH----HHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence            457789999999999999999999999999999999999999    999999999999999999876        34999


Q ss_pred             HHhcChHH-HHHHHhc----CCCCcc-----------------CCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCccccC
Q psy8012          80 VRSNKYDE-VKKNIED----GACINV-----------------SSERCGSALIYAAWKG--YEEIVDLLLDNGADVNFKS  135 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~----~~~~~~-----------------~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~  135 (271)
                      |+..++.+ +++|++.    +.+++.                 .+..|.||||+|+..|  +.+++++|++.|++++..+
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence            99999999 9999998    888776                 8889999999999999  9999999999999999999


Q ss_pred             CCCCcHHHHHHHhCCCHHHHHHHHhCCCC-----ccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc
Q psy8012         136 ATGFTALHMACRFHDDDSIVRKLLRHGAY-----YNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI  209 (271)
Q Consensus       136 ~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~-----~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~  209 (271)
                      ..|+||||+|+.. ++.+++++|+++|++     ++..+. .|.||||+| ..++.+++++|+++|++++          
T Consensus       171 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~gad~~----------  238 (364)
T 3ljn_A          171 KADETPLMRAMEF-RNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILINWEDVAMRFVEMGIDVN----------  238 (364)
T ss_dssp             TTSCCHHHHHHHT-TCHHHHHHHHHHCSCSSSCCTTCCCT-TCCCTTHHHHTTTCHHHHHHHHTTTCCTT----------
T ss_pred             CCCCCHHHHHHHc-CCHHHHHHHHhcccccccccccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------
Confidence            9999999999998 999999999999998     999998 899999999 9999999999999999854          


Q ss_pred             ccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         210 LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                     .+|..|.||||+|++.|+.+++++|.+.
T Consensus       239 -------------------------------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          239 -------------------------------MEDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             -------------------------------CCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             -------------------------------CCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence                                           7899999999999999999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=267.74  Aligned_cols=210  Identities=22%  Similarity=0.225  Sum_probs=187.0

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L   77 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l   77 (271)
                      ..+.+|.||||+|+..|+.+++++|++.|++++.++..|.||    ||+|+..|+.+++++|+++|+++          |
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP----LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL  129 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCH----HHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH----HHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            357889999999999999999999999999999999999999    99999999999999999987654          8


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      ++|+..++.+ +++|++.|++++..+ .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.++++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~v~  207 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVK  207 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT-TCHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHH
Confidence            9999999888 999999988887654 488999999999999999999999999988888899999999988 9999999


Q ss_pred             HHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCc
Q psy8012         157 KLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNF  235 (271)
Q Consensus       157 ~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  235 (271)
                      +|++.|++++. +. .|.||||+| ..++.+++++|+++|+++                                     
T Consensus       208 ~Ll~~ga~~~~-~~-~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------------------------------------  248 (285)
T 3d9h_A          208 KLLESGADVNQ-GK-GQDSPLHAVVRTASEELACLLMDFGADT-------------------------------------  248 (285)
T ss_dssp             HHHHTTCCTTC-CB-TTBCHHHHHHHTTCHHHHHHHHHTTCCT-------------------------------------
T ss_pred             HHHHCCCCCCC-CC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------------------------------
Confidence            99999998885 55 789999999 888899999999888874                                     


Q ss_pred             ccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         236 SLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       236 ~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                          +.+|..|+||||+|+  ++.+++++|.+.
T Consensus       249 ----~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          249 ----QAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             ----TCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             ----CCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence                479999999999999  457899998875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=257.22  Aligned_cols=218  Identities=22%  Similarity=0.131  Sum_probs=201.7

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      +..|..|.|||+.|++.|+.+++++|++.|++++..+..|.||    ||+|+..|+.+++++|++.|+++          
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTL----LHWAAINNRIDLVKYYISKGAIVDQLGGDLNST   78 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCH----HHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence            3457789999999999999999999999999999999999999    99999999999999999987643          


Q ss_pred             -HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 -LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 -l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                       |++|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+...++
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHH
Confidence             99999999999 9999999999999999999999999999999999999999999999999999999999977345889


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++|++.|++++..+...|.||||+| ..++.+++++|+++|++++                                  
T Consensus       159 ~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------------------------------  204 (240)
T 3eu9_A          159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD----------------------------------  204 (240)
T ss_dssp             HHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----------------------------------
T ss_pred             HHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----------------------------------
Confidence            99999999999998854799999999 9999999999999988854                                  


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                             .+|..|.||+++|++.|+.+++++|.+..
T Consensus       205 -------~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          205 -------AQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             -------CBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             -------CcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence                   78999999999999999999999998853

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.1e-40  Score=266.74  Aligned_cols=207  Identities=19%  Similarity=0.134  Sum_probs=175.9

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCC---CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ---IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      ...|.+|.||||+||+.|+.+++++|+++|++   ++.++..|.||    ||+|+..|+.+++++|+++|+++       
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g   78 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA----LHLAAILGEASTVEKLYAAGAGVLVAERGG   78 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSSCCCTTS
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            35788999999999999999999999999988   77888999999    99999999999999999998765       


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCC-----------------------------------------------CccCCCCC
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGAC-----------------------------------------------INVSSERC  105 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~-----------------------------------------------~~~~~~~g  105 (271)
                         ||+|+..++.+ +++|++.+++                                               ++..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence               99999999999 9999987755                                               56778899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012         106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSA-TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG  183 (271)
Q Consensus       106 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~  183 (271)
                      .||||+|+..|+.+++++|++.|++++..+. .|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..+
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~  236 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALLRP  236 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTSS
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCCCccccc-CCCCHHHHHHHcC
Confidence            9999999999999999999999999999875 499999999998 999999999999999999998 899999999 999


Q ss_pred             CchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCc
Q psy8012         184 AREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPL  260 (271)
Q Consensus       184 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~  260 (271)
                      +.+++++|+++|+++                                         +.+|..|.||+++|......+
T Consensus       237 ~~~~v~~Ll~~ga~~-----------------------------------------~~~~~~g~tpl~~a~~~~~~~  272 (282)
T 1oy3_D          237 NPILARLLRAHGAPE-----------------------------------------PEDGGDKLSPCSSSGSDSDSD  272 (282)
T ss_dssp             CHHHHHHHHHTTCCC-----------------------------------------CCCC-----------------
T ss_pred             CcHHHHHHHHcCCCc-----------------------------------------CcCCCcccccccccCCccccc
Confidence            999999999999985                                         479999999999998776543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.8e-40  Score=257.27  Aligned_cols=212  Identities=26%  Similarity=0.210  Sum_probs=197.5

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      +..+.||||.|++.|+.+.+++|++.+. .++..+..|.||    ||+|+..|+.+++++|+++|+++          ||
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   78 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA----LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH   78 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH----HHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH
Confidence            3468899999999999999999998765 466778899999    99999999999999999987654          99


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  157 (271)
                      +|+..++.+ +++|++.|++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~  157 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKMVHI  157 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CCHHHHHH
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             HHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcc
Q psy8012         158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFS  236 (271)
Q Consensus       158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (271)
                      |+++|++++.++. .|.||||+| ..++.+++++|+++|+++                                      
T Consensus       158 Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~--------------------------------------  198 (231)
T 3aji_A          158 LLFYKASTNIQDT-EGNTPLHLACDEERVEEAKFLVTQGASI--------------------------------------  198 (231)
T ss_dssp             HHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS--------------------------------------
T ss_pred             HHhcCCCccccCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCC--------------------------------------
Confidence            9999999999998 899999999 999999999999999884                                      


Q ss_pred             cccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         237 LLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       237 ~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                         +.+|..|.||+++|++.++.+++++|.+.
T Consensus       199 ---~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          199 ---YIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             ---CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence               47899999999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.4e-39  Score=269.19  Aligned_cols=238  Identities=23%  Similarity=0.249  Sum_probs=187.7

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN   79 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~   79 (271)
                      .+|.|+||.||+.|++++|++||++|++++.++. .|.||    ||+|+..|+.+++++|+++|+++          ++.
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp----Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP----LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH----HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence            3478899999999999999999999999998875 49999    99999999999999999999876          777


Q ss_pred             HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHh
Q psy8012          80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACRF  148 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~  148 (271)
                      +...+... +..++..+++++..+..|.||+|+|+..|+.+++++|++.|++++..          +..|.||||+|+..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~  178 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK  178 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred             HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence            77777777 88888888888888888888888888888888888888888776643          33577888888887


Q ss_pred             CCCHHHHHHHHh-CCCCccccCCCCCCCHHHHH-hcCC----chHHHHHHhchhhHHHHhhcCCcccc-----cchHHHH
Q psy8012         149 HDDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHA-GKGA----REVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMK  217 (271)
Q Consensus       149 ~~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A-~~~~----~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~  217 (271)
                       ++.+++++|++ .|++++.++. .|.||++.+ ..+.    .+++++|+++|++++..+..+.++.+     ...+.++
T Consensus       179 -g~~~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~  256 (337)
T 4g8k_A          179 -GHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  256 (337)
T ss_dssp             -TCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred             -CCHHHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence             88888888884 5888888887 788888766 3322    34778888888887765554443322     3467777


Q ss_pred             HHHhh-ccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         218 SLILE-GTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       218 ~l~~~-~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      .|+.. |++             ++.+|..|+||||+|++.|+.+++++|-+
T Consensus       257 ~Ll~~~~~~-------------vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~  294 (337)
T 4g8k_A          257 RLLEQEHIE-------------INDTDSDGKTALLLAVELKLKKIAELLCK  294 (337)
T ss_dssp             HHHTSTTCC-------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHhcCCc-------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            77764 455             66788888888888888888888888765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.6e-40  Score=276.64  Aligned_cols=216  Identities=19%  Similarity=0.220  Sum_probs=179.3

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHH--------HCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQ--------NHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-   76 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll--------~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-   76 (271)
                      +...+..|.||||+|+..|+.+++++|+        +.|++++.++..|.||    ||+|+..|+.+++++|+++|+++ 
T Consensus       118 n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~Tp----L~~A~~~g~~~iv~~Ll~~ga~~~  193 (373)
T 2fo1_E          118 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP----LMLAVLARRRRLVAYLMKAGADPT  193 (373)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             cccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCH----HHHHHHcChHHHHHHHHHCCCCCc
Confidence            3333467888888888888887777665        7788888888888888    88888888888888888887654 


Q ss_pred             ---------HHHHHhcChHH-HHHHHhcC---CCCccCCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCccc-------
Q psy8012          77 ---------LKNVRSNKYDE-VKKNIEDG---ACINVSSERCGSALIYAAWKG---YEEIVDLLLDNGADVNF-------  133 (271)
Q Consensus        77 ---------l~~a~~~~~~~-~~~ll~~~---~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~-------  133 (271)
                               ||+|+..++.+ +++|++.+   ++++..+..|.||||+|+..+   +.+++++|++.|++++.       
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence                     88888888888 88888877   678888888888888888887   78888888888888775       


Q ss_pred             -cCCCCCcHHHHHHHhCCCHHHHHHHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012         134 -KSATGFTALHMACRFHDDDSIVRKLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL  210 (271)
Q Consensus       134 -~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~  210 (271)
                       .+..|+||||+|+.. ++.+++++|++.+ ++++.++. .|.||||+| ..|+.+++++|+++|+++            
T Consensus       274 ~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~n~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~------------  339 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASV------------  339 (373)
T ss_dssp             SSSCCCCCTHHHHHSS-CCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS------------
T ss_pred             cccccCCCHHHHHHHh-CCHHHHHHHHHhcCCCccCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCc------------
Confidence             456788888888887 8888888888765 88888887 788888888 888888888888888774            


Q ss_pred             cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                   +.+|..|.||||+|+++|+.+++++|.+.
T Consensus       340 -----------------------------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          340 -----------------------------EAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             -----------------------------SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             -----------------------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                                         47899999999999999999999999874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.9e-38  Score=246.80  Aligned_cols=198  Identities=22%  Similarity=0.243  Sum_probs=176.0

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      |.+.+...|.+|.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|++.         
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~---------   80 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP----LHAAVSADAQGVFQILIRN---------   80 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHB---------
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCCHHHHHHHHHc---------
Confidence            556666678899999999999999999999999999999999999999    7777766666666666554         


Q ss_pred             hcChHHHHHHHhcCC-CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          82 SNKYDEVKKNIEDGA-CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        82 ~~~~~~~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                                   +. +++..+..|.||||+|+..++.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++
T Consensus        81 -------------~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~  146 (223)
T 2f8y_A           81 -------------RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLK  146 (223)
T ss_dssp             -------------TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHH
T ss_pred             -------------CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc-CCHHHHHHHHH
Confidence                         44 6778888999999999999999999999999999999999999999999998 99999999999


Q ss_pred             CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccc
Q psy8012         161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLK  239 (271)
Q Consensus       161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (271)
                      +|++++.++. .|.||||+| ..++.+++++|+++|++++                                        
T Consensus       147 ~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------------------------------------  185 (223)
T 2f8y_A          147 NGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD----------------------------------------  185 (223)
T ss_dssp             TTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------------------------------
T ss_pred             cCCCCCCcCC-CCcCHHHHHHHcCCHHHHHHHHHcCCCCc----------------------------------------
Confidence            9999999998 899999999 9999999999999988743                                        


Q ss_pred             ccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         240 VTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       240 ~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                       .+|..|.||+++|+++|+.+++++|.+.
T Consensus       186 -~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          186 -ITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -cccccCCCHHHHHHHhcchHHHHHHHHc
Confidence             7899999999999999999999999873

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-40  Score=264.86  Aligned_cols=212  Identities=22%  Similarity=0.208  Sum_probs=150.8

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCC--------CCchhhcccchHHHHHHHHHHHHhH-HHHHHHHHcCcHH--
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ--------IDKEIYSKNKAAARIAHSALELEER-KAINDLLRLNLDF--   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~--------~~~~~~~g~t~~~~~l~~A~~~~~~-~~~~~L~~~g~~~--   76 (271)
                      ..|+.+.+||+.||+.|+.++|++|++.|.+        ++..+..|.||    |+.|+..+.. .+++.|++.|+++  
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~----L~~a~~~~~~~~~v~~Ll~~Gadvn~   81 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHP----LCQCPKCAPAQKRLAKVPASGLGVNV   81 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------CCCCTTC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCH----HHHHHHhCCHHHHHHHHHHCCCCCCC
Confidence            4577789999999999999999999999875        44566788899    9998887664 4778888777654  


Q ss_pred             --------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8012          77 --------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR  147 (271)
Q Consensus        77 --------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  147 (271)
                              ||+|+..++.+ +++|++.+++++..+..|.||+++|+..++.+++++|++.|++++..|..|+||||+|+.
T Consensus        82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACS  161 (269)
T ss_dssp             CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence                    88888888888 888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012         148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE  226 (271)
Q Consensus       148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  226 (271)
                      . ++.+++++|+++|+++|.++. .|.||||+| ..|+.+++++|+++|++                             
T Consensus       162 ~-g~~~~v~~Ll~~gadvn~~~~-~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-----------------------------  210 (269)
T 4b93_B          162 G-GHHELVALLLQHGASINASNN-KGNTALHEAVIEKHVFVVELLLLHGAS-----------------------------  210 (269)
T ss_dssp             T-TCGGGHHHHHHTTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------------------
T ss_pred             C-CCHHHHHHHHHCCCCCCcccc-CCCcHHHHHHHcCCHHHHHHHHHCCCC-----------------------------
Confidence            7 888888888888888888887 788888888 88888888888888877                             


Q ss_pred             CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                  ++.+|..|+||||+|++++  +++++|+.+
T Consensus       211 ------------~~~~d~~G~TpL~~A~~~~--~i~~lL~~l  238 (269)
T 4b93_B          211 ------------VQVLNKRQRTAVDCAEQNS--KIMELLQVV  238 (269)
T ss_dssp             ------------SCCCCTTSCCSGGGSCTTC--HHHHHTTC-
T ss_pred             ------------CCCcCCCCCCHHHHHHhCC--cHHHHHHHH
Confidence                        4489999999999998765  467776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.5e-39  Score=252.40  Aligned_cols=205  Identities=20%  Similarity=0.191  Sum_probs=188.5

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH-------------HHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLNLD-------------FLK   78 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~-------------~l~   78 (271)
                      |.||||+|++.|+.+++++|++.|.++.. .+..|.||    ||+|+..|+.+++++|++.|++             +||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP----LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCH----HHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHH
Confidence            78999999999999999999999987654 78899999    9999999999999999999822             399


Q ss_pred             HHHhcChHH-HHHHHhcC--CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDG--ACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      +|+..++.+ +++|++.|  ++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v  156 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLI  156 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHH
Confidence            999999999 99999998  88899999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHH-hchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCC
Q psy8012         156 RKLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLL-YFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY  232 (271)
Q Consensus       156 ~~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~-~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  232 (271)
                      ++|++.| ++++.++. .|.||||+| ..++.+++++|+ ++|+++                                  
T Consensus       157 ~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~----------------------------------  201 (228)
T 2dzn_A          157 ELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEY----------------------------------  201 (228)
T ss_dssp             HHHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCS----------------------------------
T ss_pred             HHHHhcCcccccCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCCCC----------------------------------
Confidence            9999999 99999998 899999999 999999999999 888874                                  


Q ss_pred             CCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       233 ~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                             +.+|..|.||+++|++.   +++++|.+
T Consensus       202 -------~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          202 -------DLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             -------CCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             -------CccCCCCCcHHHHHHHH---HHHHHHHh
Confidence                   47999999999999754   67777764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-37  Score=248.10  Aligned_cols=218  Identities=28%  Similarity=0.242  Sum_probs=199.9

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----   76 (271)
                      |.+.+...+..|.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+..|+.+++++|+++|+++     
T Consensus        28 g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  103 (285)
T 1wdy_A           28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP----FLLAAIAGSVKLLKLFLSKGADVNECDF  103 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCccCc
Confidence            455666668889999999999999999999999999999999999999    99999999999999999997654     


Q ss_pred             -----HHHHHhcChHH-HHHHHhcCCCCccC----------CCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCC
Q psy8012          77 -----LKNVRSNKYDE-VKKNIEDGACINVS----------SERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGF  139 (271)
Q Consensus        77 -----l~~a~~~~~~~-~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~  139 (271)
                           |++|+..++.+ +++|++.|++++..          +..|.||||+|+..|+.+++++|++. |++++..+..|+
T Consensus       104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  183 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence                 99999999999 99999999999887          77899999999999999999999987 999999999999


Q ss_pred             cHHHHHHHhCCC----HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccc---
Q psy8012         140 TALHMACRFHDD----DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTIL---  210 (271)
Q Consensus       140 t~l~~a~~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~---  210 (271)
                      ||||+|+.. ++    .+++++|+++|++++.++. .|.||||+| ..++.+++++|++ .|++++..+..+.++..   
T Consensus       184 t~l~~a~~~-~~~~~~~~i~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          184 NALIHALLS-SDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  261 (285)
T ss_dssp             CHHHHHHHC-SCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHc-cccchHHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence            999999998 88    8999999999999999998 899999999 9999999999999 89998866655554432   


Q ss_pred             --cchHHHHHHHhhccC
Q psy8012         211 --DRLDEMKSLILEGTK  225 (271)
Q Consensus       211 --~~~~~~~~l~~~~~~  225 (271)
                        ...+++++|+..|++
T Consensus       262 ~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          262 ELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             HTTCHHHHHHHHHHSSC
T ss_pred             HcCcHHHHHHHHHcCCC
Confidence              458999999999999

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.2e-37  Score=258.06  Aligned_cols=227  Identities=22%  Similarity=0.206  Sum_probs=155.6

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      .|..|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..|+.+++++|+++|+++          ||
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP----LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH  129 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH----HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            46678888888888888888888888888888888888888    88888888888888888886544          88


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCC------------------------------------------------------C
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSS------------------------------------------------------E  103 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~------------------------------------------------------~  103 (271)
                      +|+..++.+ +++|++.|++++..+                                                      .
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ  209 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence            888888888 888888888776543                                                      3


Q ss_pred             CCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH
Q psy8012         104 RCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       104 ~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A  180 (271)
                      .|.||||+|+..   +..+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus       210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~n~~d~-~g~t~L~~A  287 (351)
T 3utm_A          210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER-AHNDVMEVLHKHGAKMNALDS-LGQTALHRA  287 (351)
T ss_dssp             TCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHH
T ss_pred             CCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHH
Confidence            456777777777   446777888888888877777788888888877 888888888888888887777 788888888


Q ss_pred             -hcCCchHHHHHHhchhhHHHHhhcCCcccccc-hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC
Q psy8012         181 -GKGAREVNTVLLYFIHEIFKLMANNDTTILDR-LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG  257 (271)
Q Consensus       181 -~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~  257 (271)
                       ..++.+++++|+++|++++..+..+.++.... .+..++|...+.                .....+.+++..|+++|
T Consensus       288 ~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~~~----------------~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTP----------------MRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC-----------------------------------
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhccc----------------cccCcceeehhhhhccC
Confidence             77788888888888877765544444333222 223333333322                24556666777776665

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.6e-37  Score=253.76  Aligned_cols=243  Identities=26%  Similarity=0.201  Sum_probs=210.5

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----   76 (271)
                      |.+++...+..|.||||+||+.|+.+++++|+++|++++.++..+.++    ++.++..+...++..++..++++     
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~  123 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP----FILAAIAGSVKLLKLFLSKGADVNECDF  123 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHTCHHHHHHHHTTTCCTTCBCT
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCch----hHHHHhcccchhhHHhhhccchhhhhcc
Confidence            667776667789999999999999999999999999999999999999    99999999999999999886544     


Q ss_pred             -----HHHHHhcChHH-HHHHHhcCCCCccC----------CCCCCcHHHHHHHhCCHHHHHHHHH-CCCCccccCCCCC
Q psy8012          77 -----LKNVRSNKYDE-VKKNIEDGACINVS----------SERCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGF  139 (271)
Q Consensus        77 -----l~~a~~~~~~~-~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~  139 (271)
                           +++|+..++.+ ++++++.|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+..|.
T Consensus       124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~  203 (337)
T 4g8k_A          124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  203 (337)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCC
Confidence                 99999999999 99999999987754          3468899999999999999999995 6899999999999


Q ss_pred             cHHHHHHHhCCC----HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc-hhhHHHHhhcCCcccc---
Q psy8012         140 TALHMACRFHDD----DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF-IHEIFKLMANNDTTIL---  210 (271)
Q Consensus       140 t~l~~a~~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~---  210 (271)
                      |+++.++.. +.    ..++++|+++|++++.++. .|+||||+| ..++.+++++|++. |++++..+..+.++..   
T Consensus       204 t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~-~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~  281 (337)
T 4g8k_A          204 NALIHALLS-SDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  281 (337)
T ss_dssp             CHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCG-GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH
T ss_pred             cHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH
Confidence            999988765 32    4578999999999999998 899999999 99999999999975 7888766655544322   


Q ss_pred             --cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 --DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 --~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                        ...+++++|+.+|++             ++     +.|||++|+++|+.+++++|-+.
T Consensus       282 ~~g~~~iv~~Ll~~GAd-------------~n-----~~~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          282 ELKLKKIAELLCKRGAS-------------TD-----CGDLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             HTTCHHHHHHHHTTSCS-------------ST-----TCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCC-------------CC-----CCCHHHHHHHcCCHHHHHHHHHC
Confidence              458999999999987             32     34699999999999999999763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.6e-37  Score=258.85  Aligned_cols=236  Identities=22%  Similarity=0.192  Sum_probs=209.3

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN   79 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~   79 (271)
                      ..|.|+||.|++.|+.+.+++|+.. +.+++.++..|.||    ||+|+..|+.+++++|+++|+++          ||+
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP----LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            4578999999999999999998876 88999999999999    99999999999999999998765          999


Q ss_pred             HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-----------------------
Q psy8012          80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-----------------------  135 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-----------------------  135 (271)
                      |+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+                       
T Consensus        98 A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence            99999999 999999999999999999999999999999999999999999877544                       


Q ss_pred             -------------------------------CCCCcHHHHHHHhC--CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-h
Q psy8012         136 -------------------------------ATGFTALHMACRFH--DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-G  181 (271)
Q Consensus       136 -------------------------------~~~~t~l~~a~~~~--~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~  181 (271)
                                                     ..|.||||+|+...  +..+++++|++.|++++.++. .|.||||+| .
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~  256 (351)
T 3utm_A          178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAE  256 (351)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred             cccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHH
Confidence                                           45678999999861  337899999999999999998 899999999 9


Q ss_pred             cCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHh
Q psy8012         182 KGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKR  256 (271)
Q Consensus       182 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~  256 (271)
                      .++.+++++|+++|++++..+..+.++..     ...+++++|+..|++             ++.+|..|.||+++|   
T Consensus       257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad-------------~~~~~~~g~tal~~a---  320 (351)
T 3utm_A          257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-------------PSIISLQGFTAAQMG---  320 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------TTCCCTTSCCHHHHS---
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-------------CCCcCCCCCChhhhh---
Confidence            99999999999999999876655554432     458999999999998             778999999999998   


Q ss_pred             CCCcHHHHHHHH
Q psy8012         257 GFPLLEELEKKL  268 (271)
Q Consensus       257 ~~~~~~~ll~~~  268 (271)
                       ..+++++|.+.
T Consensus       321 -~~~~~~~l~~~  331 (351)
T 3utm_A          321 -NEAVQQILSES  331 (351)
T ss_dssp             -CHHHHHHHHHC
T ss_pred             -hHHHHHHHHhc
Confidence             45677777663

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=6.5e-37  Score=241.33  Aligned_cols=199  Identities=21%  Similarity=0.205  Sum_probs=172.6

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKK   90 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~   90 (271)
                      .|.||||+|++.|+.+++++|++. |++++.++..|.||    ||+|+..|+.+++++|++.|+++.             
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~-------------   64 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETA----LHIAALYDNLEAAMVLMEAAPELV-------------   64 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHHCGGGG-------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH----HHHHHHcCCHHHHHHHHHcCchhc-------------
Confidence            589999999999999999999998 99999999999999    888888888888877777665310             


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC-------------CCCcHHHHHHHhCCCHHHHHH
Q psy8012          91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA-------------TGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        91 ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~~  157 (271)
                          ....+..+..|.||||+|+..|+.+++++|++.|++++..+.             .|.||||+|+.. ++.+++++
T Consensus        65 ----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~  139 (232)
T 2rfa_A           65 ----FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRL  139 (232)
T ss_dssp             ----GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH-TCHHHHHH
T ss_pred             ----cccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc-CCHHHHHH
Confidence                112356778899999999999999999999999999988765             799999999999 99999999


Q ss_pred             HHhCCCCccccCCCCCCCHHHHH-hcCCchHH----HHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCC
Q psy8012         158 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVN----TVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDY  232 (271)
Q Consensus       158 Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~----~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  232 (271)
                      |+++|++++.++. .|.||||+| ..++.+++    ++|+++|++..                                 
T Consensus       140 Ll~~ga~~~~~d~-~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~---------------------------------  185 (232)
T 2rfa_A          140 LIEHGADIRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYDGGDH---------------------------------  185 (232)
T ss_dssp             HHHTTCCTTCCCT-TSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS---------------------------------
T ss_pred             HHHCCCCCCCCCC-CCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh---------------------------------
Confidence            9999999999998 999999999 99999988    88888877642                                 


Q ss_pred             CCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         233 NNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       233 ~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                        .....+.+|..|.||||+|++.|+.+++++|.+.
T Consensus       186 --~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          186 --LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             --SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             --hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence              0011257899999999999999999999999774

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-38  Score=259.88  Aligned_cols=215  Identities=25%  Similarity=0.289  Sum_probs=191.9

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ...+..|.||||.||..|+.+++++|+++|++++..+..|.||    ||+|+..|+.+++++|+++|+++          
T Consensus        34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp  109 (299)
T 1s70_B           34 TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTA----LHQACIDDNVDMVKFLVENGANINQPDNEGWIP  109 (299)
T ss_dssp             CCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            3445678899999999999999999999999999999999999    99999999999999999998765          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHH-CCCCccc---------------------
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNF---------------------  133 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~---------------------  133 (271)
                      ||+|+..++.+ +++|++.|++++..+..|.||||+|+..++.+++++++. .+.+++.                     
T Consensus       110 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  189 (299)
T 1s70_B          110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH  189 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence            99999999999 999999999999999999999999999999999987774 3444332                     


Q ss_pred             -----cCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCc
Q psy8012         134 -----KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDT  207 (271)
Q Consensus       134 -----~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~  207 (271)
                           .+..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++        
T Consensus       190 ~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~d~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--------  259 (299)
T 1s70_B          190 INDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDME--------  259 (299)
T ss_dssp             CCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             cchhhhcCCCCCHHHHHHHC-CcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCC--------
Confidence                 456899999999999 999999999999999999998 899999999 9999999999999998854        


Q ss_pred             ccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         208 TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                       .+|..|.||+|+|++.....+.+++++.
T Consensus       260 ---------------------------------~~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          260 ---------------------------------AVNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             ---------------------------------CCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             ---------------------------------CcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                             7899999999999876655566666553

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.4e-38  Score=257.20  Aligned_cols=208  Identities=18%  Similarity=0.110  Sum_probs=192.0

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ...|.+|.||||+|+..|+.+++++|+++|++++..  +|.||    ||+|+..|+.+++++|+++|+++          
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~----L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~   98 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFP----LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA   98 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCH----HHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCH----HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH
Confidence            345789999999999999999999999999999987  49999    99999999999999999998765          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCC-CcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERC-GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                      ||+|+..++.+ +++|++.|++++..+..| .||||+|+..|+.+++++|++.|.+.... ..|.||||+|+.. ++.++
T Consensus        99 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~-g~~~~  176 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKN-GHVDM  176 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHc-ChHHH
Confidence            99999999999 999999999999999999 89999999999999999999999876322 2889999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCH-HHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTP-LLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK  225 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tp-L~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  225 (271)
                      +++|+++|++++.++. .|+|| ||+| ..++.+++++|+++|++++..+.  .....+..+++++|+.+|++
T Consensus       177 v~~Ll~~gad~n~~~~-~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~--~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          177 MILLLDYMTSTNTNNS-LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL--ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             HHHHHHHHHHTCTTCC-CBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG--GGGTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh--hhhhcCCHHHHHHHHHcCCC
Confidence            9999999999999998 89998 9999 99999999999999999886653  45667889999999999988

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=247.58  Aligned_cols=210  Identities=19%  Similarity=0.126  Sum_probs=166.4

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCC-----------CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHG-----------AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--   76 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g-----------~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--   76 (271)
                      ...|.|+||+|+..|+.+.+..++..+           -.++.++..|.||    ||+|+..|+.+++++|++.|+++  
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~----L~~Aa~~g~~~~v~~Ll~~g~~~~~   87 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP----MHEAAIHGHQLSLRNLISQGWAVNI   87 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCH----HHHHHHTTCHHHHHHHHHTTCCSCE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCH----HHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            467999999999999988877766543           2345678899999    99999999999999999987654  


Q ss_pred             --------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q psy8012          77 --------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACR  147 (271)
Q Consensus        77 --------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~  147 (271)
                              ||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+ .|.||||+|+.
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~  166 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR  166 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence                    99999999999 999999999999999999999999999999999999999999888644 59999999999


Q ss_pred             hCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCC
Q psy8012         148 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKE  226 (271)
Q Consensus       148 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  226 (271)
                      . ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|++.|++++                           
T Consensus       167 ~-g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---------------------------  217 (285)
T 3d9h_A          167 R-GHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESGADVN---------------------------  217 (285)
T ss_dssp             H-TCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHTTCHHHHHHHHHTTCCTT---------------------------
T ss_pred             c-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHCCCCCC---------------------------
Confidence            8 999999999999999999998 899999999 9999999999999988853                           


Q ss_pred             CCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         227 FGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       227 ~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                     +|..|.||||+|++.|+.+++++|.+.
T Consensus       218 ---------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~  244 (285)
T 3d9h_A          218 ---------------QGKGQDSPLHAVVRTASEELACLLMDF  244 (285)
T ss_dssp             ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ---------------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence                           488999999999999999999999764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.5e-36  Score=241.18  Aligned_cols=190  Identities=19%  Similarity=0.180  Sum_probs=174.1

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-H-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL-D-----   75 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~-~-----   75 (271)
                      |.+.+...|..|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|+++++ +     
T Consensus        46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  121 (253)
T 1yyh_A           46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP----LHAAVSADAQGVFQILIRNRATDLDARM  121 (253)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred             cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            344555668899999999999999999999999999999999999999    999999999999999999875 2     


Q ss_pred             -----HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q psy8012          76 -----FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH  149 (271)
Q Consensus        76 -----~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  149 (271)
                           +||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. 
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-  200 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-  200 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHC-
Confidence                 399999999999 9999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       150 ~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      ++.+++++|+++|++++.++. .|.||+++| .+|+.+++++|......
T Consensus       201 ~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          201 GSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             CCHHHHHHHHHcCCCcccccc-CCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            999999999999999999998 999999999 99999999999977544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.1e-36  Score=224.95  Aligned_cols=156  Identities=33%  Similarity=0.377  Sum_probs=140.5

Q ss_pred             ChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHHHHh
Q psy8012          15 KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKKNIE   93 (271)
Q Consensus        15 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ll~   93 (271)
                      +.|+.||+.|+.++|++|+++|++++.++..|.||    +|+|                       +..+..+ +++|++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~----l~~a-----------------------~~~~~~~~~~~ll~   58 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTP----LHHA-----------------------AENGHKEVVKLLIS   58 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHH-----------------------HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH----HHHH-----------------------HHcCCHHHHHHHHh
Confidence            46999999999999999999999999999999999    5555                       5555555 666677


Q ss_pred             cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCC
Q psy8012          94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTG  173 (271)
Q Consensus        94 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g  173 (271)
                      .|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++. .|
T Consensus        59 ~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~-~G  136 (169)
T 4gpm_A           59 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNTSDS-DG  136 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TS
T ss_pred             cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-CC
Confidence            7889999999999999999999999999999999999999999999999999998 999999999999999999998 99


Q ss_pred             CCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         174 KTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       174 ~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      +||||+| ..++.+++++|+++|+++.
T Consensus       137 ~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          137 RTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999 9999999999999999975

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.3e-36  Score=237.05  Aligned_cols=185  Identities=22%  Similarity=0.206  Sum_probs=177.8

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ...+.+|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|+++|+++          
T Consensus        34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  109 (231)
T 3aji_A           34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP----LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP  109 (231)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCH----HHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            3457889999999999999999999999999999999999999    99999999999999999997654          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ||+|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus       110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v  188 (231)
T 3aji_A          110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE-ERVEEA  188 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHC-CCHHHH
Confidence            99999999999 9999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      ++|+++|++++.++. .|.|||++| ..++.+++++|.++|++
T Consensus       189 ~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          189 KFLVTQGASIYIENK-EEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHTTCCSCCCCT-TSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCCCCCCC-CCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999999999998 999999999 99999999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.5e-36  Score=254.81  Aligned_cols=186  Identities=17%  Similarity=0.163  Sum_probs=174.6

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHc---------------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRL---------------   72 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~---------------   72 (271)
                      ..|..|.||||+|+..|+.+++++|++.|++++.  ..|.||    ||+|+..|+.+++++|+++               
T Consensus        48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  121 (364)
T 3ljn_A           48 IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKP----IHLAVMANKTDLVVALVEGAKERGQMPESLLNEC  121 (364)
T ss_dssp             CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCH----HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCH----HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhc
Confidence            3577899999999999999999999999997664  479999    9999999999999999998               


Q ss_pred             ----------------CcHHHHHHHhcC--hHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---
Q psy8012          73 ----------------NLDFLKNVRSNK--YDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD---  130 (271)
Q Consensus        73 ----------------g~~~l~~a~~~~--~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~---  130 (271)
                                      |..+||+|+..+  +.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++   
T Consensus       122 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  201 (364)
T 3ljn_A          122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS  201 (364)
T ss_dssp             CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred             chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence                            445699999999  899 9999999999999999999999999999999999999999988   


Q ss_pred             --ccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012         131 --VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       131 --~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~  201 (271)
                        ++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|+++...
T Consensus       202 ~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          202 LRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             CCTTCCCTTCCCTTHHHHTT-TCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             ccccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHHHHHcCCchhhh
Confidence              999999999999999998 999999999999999999998 999999999 999999999999999987543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.8e-36  Score=241.28  Aligned_cols=206  Identities=23%  Similarity=0.172  Sum_probs=170.6

Q ss_pred             CCCChHHHHHHhCCHH----HHHHHHHCCCCCCc----hhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcHHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQ----IVKELQNHGAQIDK----EIYSKNKAAARIAHSALEL---EERKAINDLLRLNLDFLKNV   80 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~----~~~~Ll~~g~~~~~----~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~~l~~a   80 (271)
                      .|.||||.||+.|+.+    ++++|+++|++++.    ++..|.||    ||+|+..   |+.+++++|+++|+++-.  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~----L~~A~~~~~~g~~~~v~~Ll~~g~~~~~--   74 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC----LMKAVLNLQDGVNACIMPLLQIDKDSGN--   74 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH----HHHHHHTCBTTBCTTHHHHHHHHHHTTC--
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH----HHHHHHccccchHHHHHHHHhcCCcccc--
Confidence            4899999999999997    56777789999998    89999999    8888888   888888888776643100  


Q ss_pred             HhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCC-------------CCcHHHHHHH
Q psy8012          81 RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSAT-------------GFTALHMACR  147 (271)
Q Consensus        81 ~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~t~l~~a~~  147 (271)
                             +..++  .......+..|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+.
T Consensus        75 -------~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  145 (256)
T 2etb_A           75 -------PKPLV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC  145 (256)
T ss_dssp             -------SSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH
T ss_pred             -------hhhhc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH
Confidence                   00000  0112234567999999999999999999999999999998875             9999999999


Q ss_pred             hCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-h--cCCch-------HHHHHHhchhhHHHHhhcCCcccccchH
Q psy8012         148 FHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-G--KGARE-------VNTVLLYFIHEIFKLMANNDTTILDRLD  214 (271)
Q Consensus       148 ~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~--~~~~~-------~~~~L~~~g~~~~~~~~~~~~~~~~~~~  214 (271)
                      . ++.+++++|++   .|++++.++. .|+||||+| .  .++.+       ++++|+++|++++...            
T Consensus       146 ~-~~~~~v~~Ll~~~~~ga~~n~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------------  211 (256)
T 2etb_A          146 T-KQWDVVTYLLENPHQPASLEATDS-LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------------  211 (256)
T ss_dssp             T-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------------
T ss_pred             c-CCHHHHHHHHhccccCCCcCccCC-CCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------------
Confidence            8 99999999999   9999999998 999999999 6  77888       9999999998863100            


Q ss_pred             HHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         215 EMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                            ...+.+|..|.||||+|++.|+.+++++|-+.
T Consensus       212 ----------------------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          212 ----------------------QLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             ----------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence                                  00257999999999999999999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.1e-35  Score=229.08  Aligned_cols=189  Identities=23%  Similarity=0.293  Sum_probs=168.8

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV   88 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~   88 (271)
                      +..+.||||.|+..|+.+.+++|+..+. +++..+..|.||    ||+|+..|+.+++++|                   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~L-------------------   58 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP----LNIAVHNNDIEIAKAL-------------------   58 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH-------------------
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHH-------------------
Confidence            3568999999999999999999999876 999999999999    7776666666555554                   


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC-CCcc
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL-DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG-AYYN  166 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g-~~~~  166 (271)
                         ++.|++++..+..|.||||+|+..|+.+++++|+ ..+.+++..+..|.||||+|+.. ++.+++++|++.| ++++
T Consensus        59 ---l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~  134 (201)
T 3hra_A           59 ---IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK-GHIDNVKLLLEDGREDID  134 (201)
T ss_dssp             ---HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHT-TCHHHHHHHHHHCCCCTT
T ss_pred             ---HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCcC
Confidence               5567888999999999999999999999999999 66789999999999999999998 9999999999999 9999


Q ss_pred             ccCCCCCCCHHHHH-hcCC-----chHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccc
Q psy8012         167 VVDGKTGKTPLLHA-GKGA-----REVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV  240 (271)
Q Consensus       167 ~~~~~~g~tpL~~A-~~~~-----~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (271)
                      .++. .|.||||+| ..+.     .+++++|+++|+++                                         +
T Consensus       135 ~~~~-~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-----------------------------------------~  172 (201)
T 3hra_A          135 FQND-FGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-----------------------------------------S  172 (201)
T ss_dssp             CCCT-TSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-----------------------------------------T
T ss_pred             CCCC-CCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-----------------------------------------C
Confidence            9998 999999999 8777     88899998888874                                         4


Q ss_pred             cccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         241 TKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       241 ~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      .+|..|.||||+|+++|+.+++++|.+
T Consensus       173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          173 IKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            789999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-37  Score=246.64  Aligned_cols=186  Identities=22%  Similarity=0.240  Sum_probs=164.1

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCC----CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA----QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~----~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      ..|.+|.||||+|+..|+.+++++|++.+.    +++.++..|.||    ||+|+..++.+++++|+++|+++       
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   78 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP----LHLAVITNQPEIAEALLGAGCDPELRDFRG   78 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCH----HHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            357899999999999999999999998765    789999999999    99999999999999999987654       


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCC------CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC-CCCcHHHHH
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGAC------INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA-TGFTALHMA  145 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a  145 (271)
                         ||+|+..++.+ +++|++.+++      ++..+..|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A  158 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA  158 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence               99999999999 9999998875      466778899999999999999999999999999998887 899999999


Q ss_pred             HHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         146 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       146 ~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      +.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++..
T Consensus       159 ~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          159 VDL-QNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHT-TCHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHc-CCHHHHHHHHHcCCCCCcccC-CCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            998 999999999999999999998 899999999 9999999999999998864

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.1e-35  Score=238.43  Aligned_cols=210  Identities=20%  Similarity=0.158  Sum_probs=175.0

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHH----CCCCCC----chhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcH
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQN----HGAQID----KEIYSKNKAAARIAHSALEL---EERKAINDLLRLNLD   75 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~----~~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~   75 (271)
                      ...|..|.||||.||+.|+.++++.|++    .+.+++    ..+..|.||    ||+|+..   |+.+++++|+++|++
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tp----L~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTC----LLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCH----HHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCH----HHHHHHHHhcCChHHHHHHHHhhcc
Confidence            3467889999999999999999888886    566666    357799999    9999986   999999999988753


Q ss_pred             HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCC--------------CCCc
Q psy8012          76 FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSA--------------TGFT  140 (271)
Q Consensus        76 ~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~t  140 (271)
                      +          . ++.++..  .....+..|.||||+|+..|+.+++++|++.|++++..+.              .|.|
T Consensus        83 ~----------~~~~~~i~~--~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~t  150 (273)
T 2pnn_A           83 T----------DSLKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGEL  150 (273)
T ss_dssp             T----------TCHHHHHTC--CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBS
T ss_pred             c----------cchhHHhhc--ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCC
Confidence            1          1 3334432  2344567899999999999999999999999999999886              7999


Q ss_pred             HHHHHHHhCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-hcCC---------chHHHHHHhchhhHHHHhhcCCc
Q psy8012         141 ALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-GKGA---------REVNTVLLYFIHEIFKLMANNDT  207 (271)
Q Consensus       141 ~l~~a~~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~~~~---------~~~~~~L~~~g~~~~~~~~~~~~  207 (271)
                      |||+|+.. ++.+++++|++   .|++++.++. .|+||||+| ..++         .+++++|+++|++++...     
T Consensus       151 pL~~A~~~-g~~~~v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~-----  223 (273)
T 2pnn_A          151 PLSLAACT-NQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL-----  223 (273)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-----
T ss_pred             HHHHHHHc-CCHHHHHHHHhcccCCCCceeeCC-CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc-----
Confidence            99999998 99999999999   9999999998 999999999 7777         688999999998874110     


Q ss_pred             ccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         208 TILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       208 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                   ...+.+|..|.||||+|++.|+.+++++|-+.
T Consensus       224 -----------------------------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          224 -----------------------------KLEEITNRKGLTPLALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             -----------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----------------------------ccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence                                         00246899999999999999999999999764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.6e-35  Score=229.97  Aligned_cols=183  Identities=26%  Similarity=0.243  Sum_probs=169.7

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc-------------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL-------------   74 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~-------------   74 (271)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||    ||+|+..++.+++++|++.++             
T Consensus        41 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  116 (241)
T 1k1a_A           41 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA----AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  116 (241)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH----HHHHHHcCCHHHHHHHHHcCCCccccccccCcCC
Confidence            346789999999999999999999999999999999999999    999999999999999999876             


Q ss_pred             -HHHHHHHhcChHH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012          75 -DFLKNVRSNKYDE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD  151 (271)
Q Consensus        75 -~~l~~a~~~~~~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  151 (271)
                       .+|++|+..++.+ +++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~  195 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GL  195 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH-TC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CC
Confidence             2399999999999 999999999999998 7899999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchh
Q psy8012         152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIH  196 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~  196 (271)
                      .+++++|+++|++++.++. .|.|||++| ..++.++++.|.+.++
T Consensus       196 ~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          196 LPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHHHHhcCCCCCCcCC-CCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999998 999999999 9999999999988764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.1e-34  Score=232.39  Aligned_cols=208  Identities=21%  Similarity=0.172  Sum_probs=174.6

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHH----HHCCCCCCchh----hcccchHHHHHHHHH---HHHhHHHHHHHHHcCcHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKEL----QNHGAQIDKEI----YSKNKAAARIAHSAL---ELEERKAINDLLRLNLDFLK   78 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~L----l~~g~~~~~~~----~~g~t~~~~~l~~A~---~~~~~~~~~~L~~~g~~~l~   78 (271)
                      +..|+|+||.||+.|+.+.++.|    ++.|++++..+    ..|.||    ||+|+   ..|+.+++++|++.|+++  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~g~~~~v~~Ll~~g~~~--   75 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTC----LPKALLNLSAGRNDTIPILLDIAEKT--   75 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCH----HHHHHTSCBTTBCTHHHHHHHHHHHT--
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcH----HHHHHHHhhcCCHHHHHHHHHhcccc--
Confidence            56799999999999999965544    45899999776    669999    99998   679999999998876542  


Q ss_pred             HHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC--------------CCCCcHHHH
Q psy8012          79 NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS--------------ATGFTALHM  144 (271)
Q Consensus        79 ~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~t~l~~  144 (271)
                           +.  +..++  ...++..+..|.||||+|+..|+.+++++|++.|++++..+              ..|+||||+
T Consensus        76 -----~~--~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~  146 (260)
T 3jxi_A           76 -----GN--MREFI--NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL  146 (260)
T ss_dssp             -----TC--HHHHH--TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHH
T ss_pred             -----cc--hHhhh--cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHH
Confidence                 00  22222  34456667789999999999999999999999999999988              689999999


Q ss_pred             HHHhCCCHHHHHHHHh---CCCCccccCCCCCCCHHHHH-hcCC---------chHHHHHHhchhhHHHHhhcCCccccc
Q psy8012         145 ACRFHDDDSIVRKLLR---HGAYYNVVDGKTGKTPLLHA-GKGA---------REVNTVLLYFIHEIFKLMANNDTTILD  211 (271)
Q Consensus       145 a~~~~~~~~~~~~Ll~---~g~~~~~~~~~~g~tpL~~A-~~~~---------~~~~~~L~~~g~~~~~~~~~~~~~~~~  211 (271)
                      |+.. ++.+++++|++   .|++++.++. .|+||||+| ..++         .+++++|+++|++++..          
T Consensus       147 A~~~-g~~~~v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~----------  214 (260)
T 3jxi_A          147 AACT-NQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD----------  214 (260)
T ss_dssp             HHHT-TCHHHHHHHHHCSSCCCCTTCCCT-TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred             HHHc-CCHHHHHHHHhccccCCCCcccCC-CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc----------
Confidence            9998 99999999999   9999999998 999999999 7676         68999999999987410          


Q ss_pred             chHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         212 RLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                              ....+.+|..|.||||+|++.|+.+++++|-+.
T Consensus       215 ------------------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          215 ------------------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             ------------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence                                    001257999999999999999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.6e-34  Score=234.69  Aligned_cols=219  Identities=15%  Similarity=0.058  Sum_probs=185.1

Q ss_pred             HHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH--------HHHHHhcChHH-HHHH
Q psy8012          21 IQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF--------LKNVRSNKYDE-VKKN   91 (271)
Q Consensus        21 ~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~--------l~~a~~~~~~~-~~~l   91 (271)
                      ++..+.+.+..++..+ +++.+|..|.||    ||+|+..|+.+++++|+++|+++        ||+|+..++.+ +++|
T Consensus         7 i~~~~~~~v~~lL~~~-~~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DTFKADVHGHSA----SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred             HHhcCHHHHHHHHHhC-CCCccCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3445555555555554 688899999999    99999999999999999998765        99999999999 9999


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCC-CcHHHHHHHhCCCHHHHHHHHhCCCCccccCC
Q psy8012          92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATG-FTALHMACRFHDDDSIVRKLLRHGAYYNVVDG  170 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~  170 (271)
                      ++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+.. ++.+++++|+++|++..... 
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~-  159 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFDLA-  159 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT-TCHHHHHHHHTTSCTTCCCS-
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCcccccc-
Confidence            99999999999999999999999999999999999999999999999 7999999998 99999999999999884432 


Q ss_pred             CCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc------cchHHHHHHHhhccCCCCCCCCCCccccccccc
Q psy8012         171 KTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKN  243 (271)
Q Consensus       171 ~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d  243 (271)
                       .|.||||+| ..++.+++++|+++|++++..+..+.++++      ...+++++|+..|++             ++.+|
T Consensus       160 -~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-------------~~~~~  225 (285)
T 3kea_A          160 -ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-------------IYSAN  225 (285)
T ss_dssp             -THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-------------STTTT
T ss_pred             -CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-------------CCCCC
Confidence             699999999 999999999999999998866665555534      346777777777777             34444


Q ss_pred             CCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         244 DAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       244 ~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                      .       .|+..|+.+++++|.+
T Consensus       226 ~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          226 L-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             G-------GGGTTTCHHHHHHHHH
T ss_pred             h-------hhhhcCCHHHHHHHHH
Confidence            2       4566777777777765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=237.86  Aligned_cols=176  Identities=24%  Similarity=0.222  Sum_probs=141.2

Q ss_pred             CCCCCCCChHHHHHHhCCH-HHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDP-QIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ..+..|.||||.|+..+.. .++++|++.|++++.++..|.||    ||+|+..|+.+++++|++.|+++          
T Consensus        47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~Tp----Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~  122 (269)
T 4b93_B           47 AADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSP----LHVAALHGRADLIPLLLKHGANAGARNADQAVP  122 (269)
T ss_dssp             ----------------------------CCCCTTCCCTTSCCH----HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCH----HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCc
Confidence            3467799999999998876 57899999999999999999999    99999999999999999998765          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ++.|+..++.+ +++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus       123 l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~-g~~~~v  201 (269)
T 4b93_B          123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE-KHVFVV  201 (269)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHH
T ss_pred             cccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHc-CCHHHH
Confidence            99999999999 9999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHH
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVL  191 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L  191 (271)
                      ++|+++|+|++.++. .|+||||+| .++.  ++++|
T Consensus       202 ~~Ll~~Gad~~~~d~-~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          202 ELLLLHGASVQVLNK-RQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             HHHHHTTCCSCCCCT-TSCCSGGGSCTTCH--HHHHT
T ss_pred             HHHHHCCCCCCCcCC-CCCCHHHHHHhCCc--HHHHH
Confidence            999999999999998 999999999 6553  44444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-34  Score=239.72  Aligned_cols=183  Identities=21%  Similarity=0.205  Sum_probs=170.8

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcC---c----------H
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN---L----------D   75 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g---~----------~   75 (271)
                      .|.+|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..|+.+++++|++++   .          .
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t  237 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA----LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  237 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH----HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH----HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence            47789999999999999999999999999999999999999    99999999999999999876   2          2


Q ss_pred             HHHHHHhcC---hHH-HHHHHhcCCCCcc--------CCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHH
Q psy8012          76 FLKNVRSNK---YDE-VKKNIEDGACINV--------SSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTAL  142 (271)
Q Consensus        76 ~l~~a~~~~---~~~-~~~ll~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l  142 (271)
                      +||+|+..+   ..+ +++|++.|++++.        .+..|.||||+|+..|+.+++++|++.+ ++++..|..|+|||
T Consensus       238 ~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            399999987   888 9999999999886        5678999999999999999999999876 99999999999999


Q ss_pred             HHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         143 HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       143 ~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      |+|+.. ++.+++++|+++|++++.++. .|.|||++| ..++.+++++|++++++
T Consensus       318 ~~A~~~-g~~~iv~~Ll~~gad~~~~d~-~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          318 MLAAQE-GRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHH-TCHHHHHHHHHTTCCSSCCCS-SSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHc-CCHHHHHHHHHcCCCccCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            999999 999999999999999999998 899999999 99999999999999876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.4e-34  Score=213.02  Aligned_cols=148  Identities=36%  Similarity=0.478  Sum_probs=140.7

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..|+.+ ++.|++.|+++|.+|..|.||||+|+..++.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v   86 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVV   86 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHH
Confidence            67778888888 8888889999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|+++|+++|.++. .|+||||+| ..|+.+++++|+++|++++                                   
T Consensus        87 ~~Ll~~gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-----------------------------------  130 (169)
T 4gpm_A           87 KLLISKGADVNAKDS-DGRTPLHHAAENGHKEVVKLLISKGADVN-----------------------------------  130 (169)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred             HHHHHCcCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----------------------------------
Confidence            999999999999998 999999999 9999999999999999854                                   


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                            .+|..|+||||+|+++|+.+++++|.+
T Consensus       131 ------~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A          131 ------TSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                  789999999999999999999999976

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.3e-34  Score=232.94  Aligned_cols=184  Identities=24%  Similarity=0.190  Sum_probs=166.6

Q ss_pred             CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH-------------HHHHHHhcChHH-HHHHHhcCCCCccCCCC
Q psy8012          39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD-------------FLKNVRSNKYDE-VKKNIEDGACINVSSER  104 (271)
Q Consensus        39 ~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~-------------~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~  104 (271)
                      ++.++..|.||    ||+|+..|+.+++++|+++|++             +||+|+..++.+ +++|++.|++++.++..
T Consensus         2 ~~~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~   77 (282)
T 1oy3_D            2 FGYVTEDGDTA----LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG   77 (282)
T ss_dssp             CCCCCTTCCCH----HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             CCccCCCCCcH----HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            35678899999    9999999999999999987654             399999999999 99999999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCC-----------------------------------------------ccccCCC
Q psy8012         105 CGSALIYAAWKGYEEIVDLLLDNGAD-----------------------------------------------VNFKSAT  137 (271)
Q Consensus       105 g~t~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~  137 (271)
                      |.||||+|+..|+.+++++|++.+++                                               ++..+..
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence            99999999999999999999987754                                               5666788


Q ss_pred             CCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHH
Q psy8012         138 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEM  216 (271)
Q Consensus       138 ~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  216 (271)
                      |.||||+|+.. ++.+++++|+++|++++..+...|.||||+| ..++.+++++|+++|++++                 
T Consensus       158 g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~-----------------  219 (282)
T 1oy3_D          158 GHTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-----------------  219 (282)
T ss_dssp             SCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------
T ss_pred             CcCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-----------------
Confidence            99999999998 9999999999999999998863599999999 9999999999999988854                 


Q ss_pred             HHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         217 KSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                              .+|..|.||||+|+++|+.+++++|.+.
T Consensus       220 ------------------------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  247 (282)
T 1oy3_D          220 ------------------------ARMYGGRTPLGSALLRPNPILARLLRAH  247 (282)
T ss_dssp             ------------------------CCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             ------------------------ccccCCCCHHHHHHHcCCcHHHHHHHHc
Confidence                                    7899999999999999999999999764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-33  Score=222.75  Aligned_cols=185  Identities=26%  Similarity=0.276  Sum_probs=172.9

Q ss_pred             CCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhcCCCCccCCCCC
Q psy8012          37 AQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIEDGACINVSSERC  105 (271)
Q Consensus        37 ~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g  105 (271)
                      .+++.++..|.||    ||+|+..|+.+++++|+++|+++          |++|+..++.+ +++|++.|++++..+..|
T Consensus         2 ~~~~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   77 (237)
T 3b7b_A            2 MNFKMEHQNKRSP----LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG   77 (237)
T ss_dssp             CCCCCSSCCSCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred             CCcccccCCCCCH----HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            4677889999999    99999999999999999997654          99999999999 999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcC
Q psy8012         106 GSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKG  183 (271)
Q Consensus       106 ~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~  183 (271)
                      .||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+.. ++.+++++|++.|++++..+. .|.||||+| ..+
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~  155 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSG  155 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHC
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHCC
Confidence            99999999999999999999998 88999999999999999998 999999999999999999998 899999999 999


Q ss_pred             CchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHH
Q psy8012         184 AREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEE  263 (271)
Q Consensus       184 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~  263 (271)
                      +.+++++|+++|++++                                         .+|..|.||||+|++.|+.++++
T Consensus       156 ~~~~~~~Ll~~g~~~~-----------------------------------------~~~~~g~t~L~~A~~~~~~~~v~  194 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLH-----------------------------------------AVNIHGDSPLHIAARENRYDCVV  194 (237)
T ss_dssp             CHHHHHHHHTTTCCTT-----------------------------------------CCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHcCCCCC-----------------------------------------CcCCCCCCHHHHHHHhCCHhHHH
Confidence            9999999999988754                                         78999999999999999999999


Q ss_pred             HHHHH
Q psy8012         264 LEKKL  268 (271)
Q Consensus       264 ll~~~  268 (271)
                      +|.+.
T Consensus       195 ~Ll~~  199 (237)
T 3b7b_A          195 LFLSR  199 (237)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            98763

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.2e-33  Score=220.40  Aligned_cols=181  Identities=22%  Similarity=0.221  Sum_probs=166.3

Q ss_pred             CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCC--CCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC--cH----
Q psy8012           5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHG--AQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLN--LD----   75 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g--~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g--~~----   75 (271)
                      .....+.+|.||||+|+..|+.+++++|+++|  ++++. .+..|.||    ||+|+..++.+++++|+++|  ++    
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  103 (228)
T 2dzn_A           28 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP----FHIACSVGNLEVVKSLYDRPLKPDLNKI  103 (228)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCH----HHHHHHHCCHHHHHHHHSSSSCCCTTCC
T ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCH----HHHHHHcCCHHHHHHHHhCCCCcccccC
Confidence            34457889999999999999999999999999  55555 77899999    99999999999999999987  43    


Q ss_pred             ------HHHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHH
Q psy8012          76 ------FLKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACR  147 (271)
Q Consensus        76 ------~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~  147 (271)
                            +||+|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.| ++++..+..|+||||+|+.
T Consensus       104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~  183 (228)
T 2dzn_A          104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  183 (228)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH
Confidence                  399999999999 99999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hCCCHHHHHHHH-hCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         148 FHDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       148 ~~~~~~~~~~Ll-~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      . ++.+++++|+ ++|++++.++. .|.||+++| ..   ++.++|+++
T Consensus       184 ~-~~~~~v~~Ll~~~ga~~~~~~~-~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          184 E-GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             T-TCHHHHHHHHHHHCCCSCCBCT-TSCBGGGGCSST---THHHHHHTT
T ss_pred             c-CCHHHHHHHHHhcCCCCCccCC-CCCcHHHHHHHH---HHHHHHHhc
Confidence            8 9999999999 89999999998 999999999 43   677777654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.3e-32  Score=210.67  Aligned_cols=161  Identities=24%  Similarity=0.306  Sum_probs=147.2

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..++.++                      
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------   83 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTA----LIWAVKNNRLGI----------------------   83 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCH----HHHHHHTTCHHH----------------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccH----HHHHHHcCCHHH----------------------
Confidence            468899999999999999999999999999999999999999    666655555544                      


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV  167 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~  167 (271)
                      +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.
T Consensus        84 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGADISA  162 (192)
T ss_dssp             HHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCC
Confidence            5555666788999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             cCCCCCCCHHHHH-hcCCchHHHHHHhchh
Q psy8012         168 VDGKTGKTPLLHA-GKGAREVNTVLLYFIH  196 (271)
Q Consensus       168 ~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~  196 (271)
                      ++. .|.|||++| ..++.+++++|+++|.
T Consensus       163 ~~~-~g~t~l~~A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          163 RDL-TGLTAEASARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             BCT-TSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCC-CCCCHHHHHHHhCcHHHHHHHHhccC
Confidence            998 999999999 9999999999998763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3e-32  Score=215.18  Aligned_cols=185  Identities=19%  Similarity=0.135  Sum_probs=170.7

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhh-cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIY-SKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      ..+..|.||||+|+..|+.+++++|+++|++++.... .|.||    ||+|+..++.+++++|++.|+++          
T Consensus        37 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~----L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  112 (240)
T 3eu9_A           37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP----LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC  112 (240)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh----hHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            3467899999999999999999999999999886554 49999    99999999999999999987654          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCC-HHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCCHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGY-EEIVDLLLDNGADVNFKSA-TGFTALHMACRFHDDDS  153 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~-~~~t~l~~a~~~~~~~~  153 (271)
                      |++|+..++.+ +++|++.|++++..+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+.. ++.+
T Consensus       113 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~  191 (240)
T 3eu9_A          113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA-GNTT  191 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH-TCHH
T ss_pred             HHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHc-CCHH
Confidence            99999999999 999999999999999999999999997776 8899999999999999886 899999999999 9999


Q ss_pred             HHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       154 ~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      ++++|+++|++++..+. .|.|||++| ..++.+++++|++.+.+.
T Consensus       192 ~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          192 VISLLLEAGANVDAQNI-KGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHHHTCCTTCBCT-TSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            99999999999999998 999999999 999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=2.7e-32  Score=205.17  Aligned_cols=159  Identities=29%  Similarity=0.294  Sum_probs=143.7

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCC-CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQ-IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN   91 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l   91 (271)
                      +.||||.|++.|+.+++++|++.+.+ ++.++..|.||    ||+|+..++.++                      +++|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~L   55 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP----LIWASAFGEIET----------------------VRFL   55 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCH----HHHHHHcCCHHH----------------------HHHH
Confidence            57899999999999999999999987 78889999999    666655555544                      5555


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012          92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK  171 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~  171 (271)
                      ++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. 
T Consensus        56 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-  133 (172)
T 3v30_A           56 LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG-NHVKCVEALLARGADLTTEAD-  133 (172)
T ss_dssp             HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-
T ss_pred             HHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-
Confidence            666788999999999999999999999999999999999999999999999999998 999999999999999999998 


Q ss_pred             CCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         172 TGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      .|.||||+| ..++.+++++|+++|++..
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (172)
T 3v30_A          134 SGYTPMDLAVALGYRKVQQVIENHILKLF  162 (172)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            999999999 9999999999999999875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=4.1e-32  Score=203.19  Aligned_cols=160  Identities=23%  Similarity=0.205  Sum_probs=146.7

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN   91 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l   91 (271)
                      .|.||||.|+..|+.+++++|++.|.+++.++..|.||    ||+|+..++.++                      +++|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~L   55 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTP----LMWAAAHGQIAV----------------------VEFL   55 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCH----HHHHHHCCCHHH----------------------HHHH
Confidence            58999999999999999999999999999999999999    655555554444                      5555


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012          92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK  171 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~  171 (271)
                      ++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.++. 
T Consensus        56 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-  133 (167)
T 3v31_A           56 LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGADPTIETD-  133 (167)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-
T ss_pred             HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCC-
Confidence            666788999999999999999999999999999999999999999999999999998 999999999999999999998 


Q ss_pred             CCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         172 TGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      .|.|||++| ..++.+++++|++++.+..
T Consensus       134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          134 SGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999 9999999999999998864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=3.5e-32  Score=204.00  Aligned_cols=163  Identities=30%  Similarity=0.308  Sum_probs=142.9

Q ss_pred             CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012           5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK   84 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~   84 (271)
                      +.+.....+.|+|+.||+.|+.+++++|+++|++++.++..|.||    ||+|+..++.++                   
T Consensus         6 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~-------------------   62 (169)
T 2y1l_E            6 HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTP----LHLAAFNGHLEI-------------------   62 (169)
T ss_dssp             -------CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHH-------------------
T ss_pred             ccccCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCHHH-------------------
Confidence            334456778899999999999999999999999999999999999    666655555544                   


Q ss_pred             hHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012          85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY  164 (271)
Q Consensus        85 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~  164 (271)
                         +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++
T Consensus        63 ---v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~  138 (169)
T 2y1l_E           63 ---VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGAD  138 (169)
T ss_dssp             ---HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred             ---HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence               5555666788899999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             ccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012         165 YNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI  195 (271)
Q Consensus       165 ~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g  195 (271)
                      ++.++. .|.|||++| ..++.+++++|+++|
T Consensus       139 ~~~~~~-~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          139 VNAQDK-FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCCCT-TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCcCC-CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999998 999999999 999999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=225.77  Aligned_cols=189  Identities=20%  Similarity=0.175  Sum_probs=166.4

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCC--CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQ--IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKK   90 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~   90 (271)
                      +.+++|.|+..|+.+.++.+++.+.+  ++.+|..|.||    ||+|+..|+.+++                      ++
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~----Lh~A~~~g~~~~v----------------------~~  129 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTA----LHYSVSHANFPVV----------------------QQ  129 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCH----HHHHHHTTCHHHH----------------------HH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCH----HHHHHHCCCHHHH----------------------HH
Confidence            46788999999999999999888765  88889999999    6666555555555                      55


Q ss_pred             HHhcCC-CCccCCCCCCcHHHHHH-----HhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012          91 NIEDGA-CINVSSERCGSALIYAA-----WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY  164 (271)
Q Consensus        91 ll~~~~-~~~~~~~~g~t~l~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~  164 (271)
                      |++.|+ +++..+..|.||||+|+     ..++.+++++|++.|.+.+..+..|+||||+|+.. ++.+++++|+++|++
T Consensus       130 Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~gad  208 (276)
T 4hbd_A          130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLACEAD  208 (276)
T ss_dssp             HHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred             HHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC
Confidence            555666 88999999999999999     67889999999999999988899999999999998 999999999999999


Q ss_pred             ccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccc
Q psy8012         165 YNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTK  242 (271)
Q Consensus       165 ~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (271)
                      ++.++. .|.||||+| ..|+.+++++|++ .|+++                                         +.+
T Consensus       209 ~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-----------------------------------------~~~  246 (276)
T 4hbd_A          209 VNVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDI-----------------------------------------SLT  246 (276)
T ss_dssp             TTCCCT-TSCCHHHHHHHHTCHHHHHHHHTSTTCCT-----------------------------------------TCC
T ss_pred             CCCCCC-CCCCHHHHHHHCCCHHHHHHHHhcCCCCC-----------------------------------------cCc
Confidence            999998 999999999 9999999999998 78874                                         378


Q ss_pred             cCCCchHHHHHHHhCCCcHHHHHHHHhc
Q psy8012         243 NDAGETILDIAKKRGFPLLEELEKKLAE  270 (271)
Q Consensus       243 d~~g~tpl~~A~~~~~~~~~~ll~~~~~  270 (271)
                      |..|.||||+|++.|+.+++++|.+..+
T Consensus       247 d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          247 DRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999999999999999999999988654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-33  Score=232.03  Aligned_cols=175  Identities=17%  Similarity=0.152  Sum_probs=124.7

Q ss_pred             CCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012           5 YDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNK   84 (271)
Q Consensus         5 ~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~   84 (271)
                      ++...|.+|.||||+||..|+.+++++|+++|++++.++..|.||                           ||+|+..+
T Consensus       123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp---------------------------Lh~A~~~g  175 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC---------------------------LVKAVKSV  175 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH---------------------------HHHHHHSS
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH---------------------------HHHHHHhc
Confidence            333345556666666666666666666666666666666666666                           55555555


Q ss_pred             h---HH-HHHHHhcC-CCCccCCCCCCcHHHHHHH----hCCHHHHHHHHHC--------------------CCCccccC
Q psy8012          85 Y---DE-VKKNIEDG-ACINVSSERCGSALIYAAW----KGYEEIVDLLLDN--------------------GADVNFKS  135 (271)
Q Consensus        85 ~---~~-~~~ll~~~-~~~~~~~~~g~t~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~  135 (271)
                      +   .+ ++.|++.+ ++++.++..|.||||+|+.    .|+.+++++|++.                    |++++..+
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~  255 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN  255 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence            5   34 55555554 5688899999999999999    8999999999876                    88899999


Q ss_pred             CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchH
Q psy8012         136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLD  214 (271)
Q Consensus       136 ~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~  214 (271)
                      ..|+||||.|+.       +++|+++  +++.++. .|+||||+| ..|+.+++++|+++|++++               
T Consensus       256 ~~g~t~L~~a~~-------~~~Ll~~--~~n~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~---------------  310 (327)
T 1sw6_A          256 GERKDSILENLD-------LKWIIAN--MLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPF---------------  310 (327)
T ss_dssp             ----CHHHHHCS-------HHHHHHH--TTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTT---------------
T ss_pred             ccCCChhHHHHH-------HHHHHHh--CCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCc---------------
Confidence            999999999873       7888888  6888888 899999999 9999999999999999854               


Q ss_pred             HHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhC
Q psy8012         215 EMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG  257 (271)
Q Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~  257 (271)
                                                .+|..|+||||+|+++|
T Consensus       311 --------------------------~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          311 --------------------------IANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --------------------------CCCTTSCCGGGGTCC--
T ss_pred             --------------------------ccCCCCCCHHHHHHhcC
Confidence                                      79999999999998875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=3.5e-32  Score=202.45  Aligned_cols=157  Identities=20%  Similarity=0.169  Sum_probs=141.3

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HH
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VK   89 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~   89 (271)
                      ....||||.|++.|+.+++++|+++|++++.++..|.||    ||+|                       +. ++.+ ++
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A-----------------------~~-~~~~~v~   54 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA----LQVM-----------------------KL-GNPEIAR   54 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCH----HHHC-----------------------CS-SCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccH----HHHH-----------------------Hc-CcHHHHH
Confidence            346799999999999999999999999999999999999    5544                       44 5555 66


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC-cccc
Q psy8012          90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY-YNVV  168 (271)
Q Consensus        90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~-~~~~  168 (271)
                      +|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++ ++..
T Consensus        55 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~  133 (162)
T 1ihb_A           55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHR  133 (162)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHccCCCCCCc
Confidence            66677888999999999999999999999999999999999999999999999999998 999999999999998 5888


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      +. .|.||||+| ..++.+++++|+++|++
T Consensus       134 ~~-~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          134 NH-KGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CT-TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            88 899999999 99999999999999985

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-34  Score=236.96  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=182.2

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----H---------
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----L---------   77 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----l---------   77 (271)
                      ..+.+|+|    ....+++++|+++|++++.++..|.++    ++     |+.++++.|+++|+++    +         
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~----~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~   87 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVN----DN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSS   87 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCC----CH-----HHHHHHHHHHHHHHC---------------
T ss_pred             cccccchh----hhcCchHHHHhhCCcccccCCCCCCcc----cC-----chhHHHHHHHHhccCCccccchHhhhcccc
Confidence            44566666    345577999999999999999999999    76     9999999999998654    3         


Q ss_pred             --------------HHHHhcChHH-HHHHHhcCCCCcc-CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012          78 --------------KNVRSNKYDE-VKKNIEDGACINV-SSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA  141 (271)
Q Consensus        78 --------------~~a~~~~~~~-~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  141 (271)
                                    +.++.....+ +++|++.|++++. ++..|.||||+|+..|+.+++++|++.|++++..+..|+||
T Consensus        88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~Tp  167 (327)
T 1sw6_A           88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC  167 (327)
T ss_dssp             ----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH
T ss_pred             cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence                          4445555566 8888899999999 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC---HHHHHHHHhCC-CCccccCCCCCCCHHHHH-h----cCCchHHHHHHhc------------------
Q psy8012         142 LHMACRFHDD---DSIVRKLLRHG-AYYNVVDGKTGKTPLLHA-G----KGAREVNTVLLYF------------------  194 (271)
Q Consensus       142 l~~a~~~~~~---~~~~~~Ll~~g-~~~~~~~~~~g~tpL~~A-~----~~~~~~~~~L~~~------------------  194 (271)
                      ||+|+.. ++   .++++.|++.+ ++++.++. .|+||||+| .    .++.+++++|++.                  
T Consensus       168 Lh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~  245 (327)
T 1sw6_A          168 LVKAVKS-VNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN  245 (327)
T ss_dssp             HHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECT-TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred             HHHHHHh-cccccHHHHHHHHHhhhccccCCCC-CCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence            9999997 77   67888888876 78999998 999999999 7    8999999999998                  


Q ss_pred             --hhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         195 --IHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       195 --g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                        |++++..+. .+.++++....+++|+..+               ++.+|..|+||||+|++.|+.+++++|-+.
T Consensus       246 ~~g~~~~~~~~-~g~t~L~~a~~~~~Ll~~~---------------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  305 (327)
T 1sw6_A          246 EKESKPNDKNG-ERKDSILENLDLKWIIANM---------------LNAQDSNGDTCLNIAARLGNISIVDALLDY  305 (327)
T ss_dssp             ---------------CHHHHHCSHHHHHHHT---------------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             cccCCcccccc-cCCChhHHHHHHHHHHHhC---------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence              455554433 3344455444588888874               458999999999999999999999999764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=3.1e-31  Score=204.16  Aligned_cols=161  Identities=30%  Similarity=0.408  Sum_probs=147.0

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      ..+.+|.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|++                
T Consensus        34 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----l~~A~~~~~~~~~~~Ll~----------------   93 (201)
T 3hra_A           34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSP----YLYAGAQGRTEILAYMLK----------------   93 (201)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHH----------------
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHh----------------
Confidence            457789999999999999999999999999999999999999    777777666666666654                


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCC-----HHHHHHHHhC
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDD-----DSIVRKLLRH  161 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~~~-----~~~~~~Ll~~  161 (271)
                           ..+.+++..+..|.||||+|+..|+.+++++|++.| ++++..+..|+||||+|+.. +.     .+++++|+++
T Consensus        94 -----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~~v~~Ll~~  167 (201)
T 3hra_A           94 -----HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL-REGNQLYQDIVKLLMEN  167 (201)
T ss_dssp             -----HSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS-SCCSHHHHHHHHHHHHT
T ss_pred             -----ccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh-ccchhhHHHHHHHHHHC
Confidence                 346688899999999999999999999999999999 99999999999999999998 77     8999999999


Q ss_pred             CCCccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012         162 GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI  195 (271)
Q Consensus       162 g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g  195 (271)
                      |++++.++. .|.||||+| ..++.+++++|+++|
T Consensus       168 ga~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          168 GADQSIKDN-SGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCccCC-CCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999998 999999999 999999999999886

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=6.6e-32  Score=220.48  Aligned_cols=204  Identities=21%  Similarity=0.187  Sum_probs=129.4

Q ss_pred             HHHHHhCCHHHHHHHHHCCCCCCc---------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HH
Q psy8012          18 AIAIQIGDPQIVKELQNHGAQIDK---------EIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LK   78 (271)
Q Consensus        18 ~~A~~~g~~~~~~~Ll~~g~~~~~---------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~   78 (271)
                      +.+++.++.+.++.++.....+..         .+..|.||    ||.|+..|+.+++++|+++|+++          ||
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   78 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAV----FLAACSSGDTEEVLRLLERGADINYANVDGLTALH   78 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHH----HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccH----HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            357788888888888887654332         23457788    88888888888887777765433          55


Q ss_pred             HHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHH
Q psy8012          79 NVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK  157 (271)
Q Consensus        79 ~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~  157 (271)
                      +|+..++.+ +++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. +..++++.
T Consensus        79 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~  157 (299)
T 1s70_B           79 QACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-AMEELLQN  157 (299)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc-chHHHHHH
Confidence            555555555 5555555555555555555555555555555555555555555555555555555555554 55555544


Q ss_pred             HHh-CCCCccc--------------------------cCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc
Q psy8012         158 LLR-HGAYYNV--------------------------VDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI  209 (271)
Q Consensus       158 Ll~-~g~~~~~--------------------------~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~  209 (271)
                      ++. .|.+++.                          .+. .|.||||+| ..|+.+++++|+++|++            
T Consensus       158 ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~d------------  224 (299)
T 1s70_B          158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD------------  224 (299)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT-TCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred             HHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC-CCCCHHHHHHHCCcHHHHHHHHHcCCC------------
Confidence            432 2333221                          222 455555555 55555555555555554            


Q ss_pred             ccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         210 LDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                   ++.+|..|.||||+|++.|+.+++++|-+.
T Consensus       225 -----------------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  254 (299)
T 1s70_B          225 -----------------------------VNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (299)
T ss_dssp             -----------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -----------------------------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence                                         557899999999999999999999999764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.3e-33  Score=220.77  Aligned_cols=181  Identities=18%  Similarity=0.134  Sum_probs=149.9

Q ss_pred             chhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc--------------HHHHHHHhcChHH-HHHHHhcCCCCccCCCCC
Q psy8012          41 KEIYSKNKAAARIAHSALELEERKAINDLLRLNL--------------DFLKNVRSNKYDE-VKKNIEDGACINVSSERC  105 (271)
Q Consensus        41 ~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~--------------~~l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g  105 (271)
                      .+|..|.||    ||+|+..|+.+++++|++.+.              .+||+|+..++.+ +++|++.|++++.++..|
T Consensus         3 ~~d~~g~t~----L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   78 (236)
T 1ikn_D            3 QLTEDGDSF----LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG   78 (236)
T ss_dssp             ----CCCCT----THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC
T ss_pred             cCCCCCCch----hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            467789999    999999999999999987654              3499999999999 999999999999999999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCC------ccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHH
Q psy8012         106 GSALIYAAWKGYEEIVDLLLDNGAD------VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH  179 (271)
Q Consensus       106 ~t~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~  179 (271)
                      .||||+|+..|+.+++++|++.+.+      ++..+..|.||||+|+.. ++.+++++|+++|++++.++...|.||||+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  157 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGADVNAQEPCNGRTALHL  157 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            9999999999999999999998865      456678899999999998 999999999999999998885479999999


Q ss_pred             H-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCC
Q psy8012         180 A-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGF  258 (271)
Q Consensus       180 A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~  258 (271)
                      | ..++.+++++|+++|++++                                         .+|..|.||||+|+++|+
T Consensus       158 A~~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~tpl~~A~~~~~  196 (236)
T 1ikn_D          158 AVDLQNPDLVSLLLKCGADVN-----------------------------------------RVTYQGYSPYQLTWGRPS  196 (236)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSC-----------------------------------------CCCTTCCCGGGGCTTSSC
T ss_pred             HHHcCCHHHHHHHHHcCCCCC-----------------------------------------cccCCCCCHHHHHHccCc
Confidence            9 9999999999999998865                                         556666666666666666


Q ss_pred             CcHHHHHHH
Q psy8012         259 PLLEELEKK  267 (271)
Q Consensus       259 ~~~~~ll~~  267 (271)
                      .+++++|.+
T Consensus       197 ~~~~~~Ll~  205 (236)
T 1ikn_D          197 TRIQQQLGQ  205 (236)
T ss_dssp             HHHHHHHHT
T ss_pred             hHHHHHHHH
Confidence            666666554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.2e-35  Score=229.54  Aligned_cols=157  Identities=22%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012          95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK  174 (271)
Q Consensus        95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  174 (271)
                      |++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++.|++++..++..|.
T Consensus        44 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~g~  122 (229)
T 2vge_A           44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGAAIFATTLSDGA  122 (229)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCSSTTC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccCCCCC
Confidence            334444444444444444444444444444444444444444444444444444 4444444444444444444322444


Q ss_pred             CHHHHH---hcCCchHHHHHHhchhhHHHHhhcCCcccccc--hHHHHHHHhhccCCCCCCCCCCcccccccccCCCchH
Q psy8012         175 TPLLHA---GKGAREVNTVLLYFIHEIFKLMANNDTTILDR--LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETI  249 (271)
Q Consensus       175 tpL~~A---~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tp  249 (271)
                      ||||+|   ..++.+++++|+++|++++..+..+.+..+..  ....+.|+..|++           ..++.+|..|+||
T Consensus       123 tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~-----------~~~~~~d~~G~Tp  191 (229)
T 2vge_A          123 TAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES-----------VTVLRRDGPEETD  191 (229)
T ss_dssp             CTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCE-----------EEEEESSCTTCSS
T ss_pred             CHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccc-----------ccccccCCCcccH
Confidence            444443   33444444444444444443322221111110  0111222222222           1156789999999


Q ss_pred             HHHHHHhCCCcHHH
Q psy8012         250 LDIAKKRGFPLLEE  263 (271)
Q Consensus       250 l~~A~~~~~~~~~~  263 (271)
                      ||+|+++|+.++++
T Consensus       192 L~~A~~~g~~~~v~  205 (229)
T 2vge_A          192 WWWAALHGQEGYVP  205 (229)
T ss_dssp             EEEEEETTEEEEEE
T ss_pred             HHHHHHcCCcceee
Confidence            99999999998764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.3e-31  Score=214.06  Aligned_cols=166  Identities=22%  Similarity=0.200  Sum_probs=144.5

Q ss_pred             CCCCCCCChHHHHHHh---CCHHHHHHHHHCCCCCCc-----------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012           8 YVPYEDHKPIAIAIQI---GDPQIVKELQNHGAQIDK-----------EIYSKNKAAARIAHSALELEERKAINDLLRLN   73 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~~~-----------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g   73 (271)
                      ..|.+|.||||+|+..   |+.+++++|++.|++++.           ++..|.||    ||+|+..|+.+++       
T Consensus        38 ~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~v-------  106 (256)
T 2etb_A           38 TEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSA----LHIAIEKRSLQCV-------  106 (256)
T ss_dssp             SBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCH----HHHHHHTTCHHHH-------
T ss_pred             cCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCH----HHHHHHcCCHHHH-------
Confidence            3588999999999999   999999999999887663           34679999    6666655555555       


Q ss_pred             cHHHHHHHhcChHHHHHHHhcCCCCccCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---CCCCccccCCC
Q psy8012          74 LDFLKNVRSNKYDEVKKNIEDGACINVSSER-------------CGSALIYAAWKGYEEIVDLLLD---NGADVNFKSAT  137 (271)
Q Consensus        74 ~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~  137 (271)
                                     ++|++.|++++..+..             |.||||+|+..|+.+++++|++   .|++++..|..
T Consensus       107 ---------------~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~  171 (256)
T 2etb_A          107 ---------------KLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL  171 (256)
T ss_dssp             ---------------HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             ---------------HHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC
Confidence                           4555566777777765             9999999999999999999999   99999999999


Q ss_pred             CCcHHHHHHH--hCCCHH-------HHHHHHhCCCCc-------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHH
Q psy8012         138 GFTALHMACR--FHDDDS-------IVRKLLRHGAYY-------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFK  200 (271)
Q Consensus       138 ~~t~l~~a~~--~~~~~~-------~~~~Ll~~g~~~-------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~  200 (271)
                      |+||||+|+.  . ++.+       ++++|+++|+++       +.++. .|.||||+| ..|+.+++++|+++|++...
T Consensus       172 g~TpLh~A~~~~~-~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          172 GNTVLHALVMIAD-NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLTPLKLAAKEGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             SCCHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHccc-CCchhhHHHHHHHHHHHHcCCCcccccccccccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCCCC
Confidence            9999999998  5 7888       999999999999       88998 999999999 99999999999999998764


Q ss_pred             H
Q psy8012         201 L  201 (271)
Q Consensus       201 ~  201 (271)
                      .
T Consensus       250 ~  250 (256)
T 2etb_A          250 A  250 (256)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.8e-31  Score=203.17  Aligned_cols=162  Identities=25%  Similarity=0.212  Sum_probs=145.2

Q ss_pred             CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCH
Q psy8012          39 IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE  118 (271)
Q Consensus        39 ~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~  118 (271)
                      ++.++..|.||    ||+|+..|+.++                      +++|++.+++++..+..|.||||+|+..|+.
T Consensus        28 ~n~~d~~g~t~----L~~A~~~g~~~~----------------------v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~   81 (192)
T 2rfm_A           28 RNYRDSYNRTP----LMVACMLGMENA----------------------IDKLVENFDKLEDKDIEGSTALIWAVKNNRL   81 (192)
T ss_dssp             HTCCCTTCCCH----HHHHHHHTCGGG----------------------HHHHHHHHCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HhCcCCCCCCH----HHHHHHcCCHHH----------------------HHHHHHhccccccccccCccHHHHHHHcCCH
Confidence            45678889999    666655555544                      5555556778889999999999999999999


Q ss_pred             HHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         119 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       119 ~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      +++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus        82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~  159 (192)
T 2rfm_A           82 GIAEKLLSKGSNVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGRSEIVKKLLELGAD  159 (192)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            999999999999999999999999999999 999999999999999999998 999999999 99999999999999988


Q ss_pred             HHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         198 IFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                      ++                                         .+|..|.||+|+|+..|+.+++++|.+..
T Consensus       160 ~~-----------------------------------------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          160 IS-----------------------------------------ARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             TT-----------------------------------------CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CC-----------------------------------------CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            54                                         78999999999999999999999998753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=2.3e-30  Score=202.51  Aligned_cols=163  Identities=21%  Similarity=0.201  Sum_probs=148.9

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||    ||+|+..++.+++++|                 
T Consensus        53 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~L-----------------  111 (223)
T 2f8y_A           53 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP----LILAARLAVEGMLEDL-----------------  111 (223)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCH----HHHHHHHTCHHHHHHH-----------------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcH----HHHHHHhCcHHHHHHH-----------------
Confidence            357789999999999999999999999987 899999999999    7777666666555554                 


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcc
Q psy8012          87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN  166 (271)
Q Consensus        87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~  166 (271)
                           ++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++
T Consensus       112 -----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~  185 (223)
T 2f8y_A          112 -----INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRD  185 (223)
T ss_dssp             -----HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTT
T ss_pred             -----HHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc-CCHHHHHHHHHcCCCCc
Confidence                 556778899999999999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             ccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         167 VVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       167 ~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      .++. .|.|||++| ..++.+++++|+++|+..
T Consensus       186 ~~~~-~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          186 ITDH-MDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             CCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             cccc-cCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            9998 899999999 999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=5.9e-31  Score=199.14  Aligned_cols=163  Identities=22%  Similarity=0.226  Sum_probs=144.2

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV   88 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~   88 (271)
                      +.++.++||.||+.|+.+++++|++. +.+++..+..|.||    ||+|+..++.++                      +
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v   55 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSP----LHWACREGRSAV----------------------V   55 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCH----HHHHHHTTCHHH----------------------H
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCH----HHHHHHcCcHHH----------------------H
Confidence            35688999999999999999999998 67899999999999    555555544444                      5


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~  168 (271)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.+
T Consensus        56 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~  134 (179)
T 3f6q_A           56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSIC  134 (179)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSSBC
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcchh
Confidence            556667888999999999999999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHhchhhHHH
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFK  200 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~  200 (271)
                      +. .|.|||++| ..++.+++++|+++|++++.
T Consensus       135 ~~-~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          135 NK-YGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             CT-TSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             cc-CCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            98 999999999 99999999999999998763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=5.6e-31  Score=196.58  Aligned_cols=160  Identities=24%  Similarity=0.230  Sum_probs=140.4

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      .+.+|.||||.|++.|+.+++++|++. +.+++..+..|.||    ||+|+..++.++                      
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------   57 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP----LHFAAGYNRVSV----------------------   57 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH----HHHHHHTTCHHH----------------------
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH----HHHHHHcChHHH----------------------
Confidence            467789999999999999999999985 56788888899999    555555554444                      


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV  167 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~  167 (271)
                      +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.
T Consensus        58 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcc
Confidence            5555667788999999999999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             cCCCCCCCHHHHHhcCCchHHHHHHhchh
Q psy8012         168 VDGKTGKTPLLHAGKGAREVNTVLLYFIH  196 (271)
Q Consensus       168 ~~~~~g~tpL~~A~~~~~~~~~~L~~~g~  196 (271)
                      ++. .|.||||+|..++.+++++|++.|+
T Consensus       137 ~~~-~g~t~l~~a~~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          137 KNR-DGNTPLDLVKDGDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCT-TSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred             cCC-CCCChhHhHhcCChHHHHHHhhccc
Confidence            998 9999999993389999999999886

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=210.16  Aligned_cols=160  Identities=23%  Similarity=0.297  Sum_probs=145.7

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCC-CCCchhhcccchHHHHHHHHH-----HHHhHHHHHHHHHcCcHHHHHHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGA-QIDKEIYSKNKAAARIAHSAL-----ELEERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g~t~~~~~l~~A~-----~~~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      ..|.+|.||||+||..|+.+++++|++.|+ +++..+..|.||    ||+|+     ..++.++                
T Consensus       106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp----L~~a~~~~~~~~~~~~~----------------  165 (276)
T 4hbd_A          106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSP----IMLTALATLKTQDDIET----------------  165 (276)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCH----HHHGGGCCCCSHHHHHH----------------
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCH----HHHHHHHHhhhhhhHHH----------------
Confidence            457889999999999999999999999998 999999999999    77776     4455544                


Q ss_pred             hcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh-
Q psy8012          82 SNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR-  160 (271)
Q Consensus        82 ~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~-  160 (271)
                            +++|++.|...+..+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|++ 
T Consensus       166 ------v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~  238 (276)
T 4hbd_A          166 ------VLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH-GHKEIAGLLLAV  238 (276)
T ss_dssp             ------HHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHTS
T ss_pred             ------HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhc
Confidence                  4555556777788888999999999999999999999999999999999999999999999 99999999999 


Q ss_pred             CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhch
Q psy8012         161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFI  195 (271)
Q Consensus       161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g  195 (271)
                      .|++++.++. .|.||||+| ..|+.+++++|++++
T Consensus       239 ~gad~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          239 PSCDISLTDR-DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCcCcCC-CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            8999999998 999999999 999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-30  Score=191.95  Aligned_cols=150  Identities=25%  Similarity=0.303  Sum_probs=136.5

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNI   92 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll   92 (271)
                      ..|+||.|++.|+.+++++|+++|++++ .+..|.||    ||+|+..|+.+++++|                      +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~----L~~A~~~~~~~~v~~L----------------------l   54 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSP----LHLAAQYGHFSTTEVL----------------------L   54 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCH----HHHHHHHTCHHHHHHH----------------------H
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCH----HHHHHHcCCHHHHHHH----------------------H
Confidence            4689999999999999999999999887 57889999    7777666666555555                      5


Q ss_pred             hcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCC
Q psy8012          93 EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT  172 (271)
Q Consensus        93 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~  172 (271)
                      +.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .
T Consensus        55 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~  132 (153)
T 1awc_B           55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSK-F  132 (153)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-T
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCC-C
Confidence            56778899999999999999999999999999999999999999999999999998 999999999999999999998 9


Q ss_pred             CCCHHHHH-hcCCchHHHHH
Q psy8012         173 GKTPLLHA-GKGAREVNTVL  191 (271)
Q Consensus       173 g~tpL~~A-~~~~~~~~~~L  191 (271)
                      |.|||++| ..++.+++++|
T Consensus       133 g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          133 CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHh
Confidence            99999999 99999999987

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=2.7e-30  Score=193.21  Aligned_cols=149  Identities=27%  Similarity=0.316  Sum_probs=135.4

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ||.|+..++.+ +++|++.+.+++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus         7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v   85 (167)
T 3v31_A            7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK-GYTDIV   85 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CCHHHH
Confidence            45555555555 5666667788999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|+++|++++..+. .|.||||+| ..++.+++++|+++|++++                                   
T Consensus        86 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------  129 (167)
T 3v31_A           86 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPT-----------------------------------  129 (167)
T ss_dssp             HHHHHHTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred             HHHHHCCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------
Confidence            999999999999998 899999999 9999999999999998854                                   


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                            .+|..|.||+|+|++.|+.+++++|.+.
T Consensus       130 ------~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          130 ------IETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             ------CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ------CcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence                  7899999999999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=3.2e-30  Score=193.34  Aligned_cols=149  Identities=36%  Similarity=0.426  Sum_probs=135.3

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ++.|+..++.+ +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~   96 (169)
T 2y1l_E           18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIV   96 (169)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHH
Confidence            45555555555 5666667888999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|+++|++++..+. .|.||||+| ..++.+++++|+++|++++                                   
T Consensus        97 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------  140 (169)
T 2y1l_E           97 EVLLKNGADVNANDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVN-----------------------------------  140 (169)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred             HHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------
Confidence            999999999999998 899999999 9999999999999998853                                   


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                            .+|..|.||+|+|++.|+.+++++|.+.
T Consensus       141 ------~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          141 ------AQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             ------CcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence                  7899999999999999999999999863

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.7e-31  Score=211.35  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK   89 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~   89 (271)
                      +..|.||||.|+..|+.+.++.|+++|++++.. ..|.||    ||.|+..|+.+++                      +
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~----L~~A~~~g~~~~v----------------------~   54 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLAL----LLDSSLEGEFDLV----------------------Q   54 (239)
T ss_dssp             ------------------------------------CHHH----HHHHHHHTCHHHH----------------------H
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHH----HHHHHHcCCHHHH----------------------H
Confidence            456999999999999999999999999999864 678899    6666666555555                      4


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccC
Q psy8012          90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD  169 (271)
Q Consensus        90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~  169 (271)
                      +|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|+++|++++..+
T Consensus        55 ~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           55 RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             HHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcceec
Confidence            45556788999999999999999999999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCCC-CHHHHH---hcCCchHHHHHHhchhhHHHHhh
Q psy8012         170 GKTGK-TPLLHA---GKGAREVNTVLLYFIHEIFKLMA  203 (271)
Q Consensus       170 ~~~g~-tpL~~A---~~~~~~~~~~L~~~g~~~~~~~~  203 (271)
                      . .|. ||||+|   ..|+.+++++|+++|++++....
T Consensus       134 ~-~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~  170 (239)
T 1ycs_B          134 Y-SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK  170 (239)
T ss_dssp             S-SSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGG
T ss_pred             C-CCCcchHHHHHHhhhccHHHHHHHHHhhhccccccc
Confidence            8 565 999998   56889999999999999875543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=6.8e-30  Score=188.86  Aligned_cols=151  Identities=25%  Similarity=0.265  Sum_probs=138.7

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKK   90 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~   90 (271)
                      |.||||.|++.|+.+++++|++. +.+++..+..|.||                           ||+ +..++.+ +++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~---------------------------L~~-~~~~~~~~v~~   53 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA---------------------------LQV-MMFGSTAIALE   53 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCH---------------------------HHH-SCTTCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcH---------------------------HHH-HHcCCHHHHHH
Confidence            56899999999999999999998 45899999999999                           555 5555555 666


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCC
Q psy8012          91 NIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG  170 (271)
Q Consensus        91 ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~  170 (271)
                      |++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++. ++++.++.
T Consensus        54 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-cCCCCcCC
Confidence            6777889999999999999999999999999999999999999999999999999999 999999999999 99999998


Q ss_pred             CCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         171 KTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       171 ~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                       .|.||||+| ..++.+++++|+++
T Consensus       132 -~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          132 -RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -CCCCHHHHHHHcCcHHHHHHHHhh
Confidence             999999999 99999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=4.5e-30  Score=189.31  Aligned_cols=146  Identities=27%  Similarity=0.287  Sum_probs=128.7

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..++.+ +++|++.|.+++ .+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v   83 (153)
T 1awc_B            6 LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIV   83 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-ChHHHH
Confidence            34444444444 455555566655 577899999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++                                   
T Consensus        84 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----------------------------------  127 (153)
T 1awc_B           84 EVLLKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVH-----------------------------------  127 (153)
T ss_dssp             HHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------
T ss_pred             HHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-----------------------------------
Confidence            999999999999998 999999999 9999999999999998854                                   


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEK  266 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~  266 (271)
                            .+|..|.||+|+|+++|+.+++++|+
T Consensus       128 ------~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          128 ------TQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             ------ccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence                  78999999999999999999999984

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.6e-30  Score=209.75  Aligned_cols=164  Identities=24%  Similarity=0.262  Sum_probs=139.2

Q ss_pred             CCCCCCCChHHHHHHh---CCHHHHHHHHHCCCCC-------C----chhhcccchHHHHHHHHHHHHhHHHHHHHHHcC
Q psy8012           8 YVPYEDHKPIAIAIQI---GDPQIVKELQNHGAQI-------D----KEIYSKNKAAARIAHSALELEERKAINDLLRLN   73 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~g~~~-------~----~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g   73 (271)
                      ..+..|.||||+|+..   |+.+++++|+++|+++       +    ..+..|.||    ||+|+..|+.++++      
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tp----L~~A~~~g~~~~v~------  118 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTA----LHIAIERRNMTLVT------  118 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCH----HHHHHHTTCHHHHH------
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCH----HHHHHHcCCHHHHH------
Confidence            4578999999999987   9999999999998653       2    256689999    66666555555554      


Q ss_pred             cHHHHHHHhcChHHHHHHHhcCCCCccCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---CCCCccccCC
Q psy8012          74 LDFLKNVRSNKYDEVKKNIEDGACINVSSE--------------RCGSALIYAAWKGYEEIVDLLLD---NGADVNFKSA  136 (271)
Q Consensus        74 ~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~  136 (271)
                                      +|++.|++++..+.              .|.||||+|+..|+.+++++|++   .|++++..+.
T Consensus       119 ----------------~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~  182 (273)
T 2pnn_A          119 ----------------LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS  182 (273)
T ss_dssp             ----------------HHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             ----------------HHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC
Confidence                            45556677777775              79999999999999999999999   9999999999


Q ss_pred             CCCcHHHHHHHhCCC---------HHHHHHHHhCCCCcc-------ccCCCCCCCHHHHH-hcCCchHHHHHHhchh-hH
Q psy8012         137 TGFTALHMACRFHDD---------DSIVRKLLRHGAYYN-------VVDGKTGKTPLLHA-GKGAREVNTVLLYFIH-EI  198 (271)
Q Consensus       137 ~~~t~l~~a~~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~-~~  198 (271)
                      .|+||||+|+.. ++         .+++++|+++|++++       .++. .|.||||+| ..|+.+++++|+++|+ +.
T Consensus       183 ~g~tpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          183 VGNTVLHALVEV-ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             TSCCHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             CCCcHHHHHHHc-cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCC-CCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            999999999998 77         789999999999997       4777 899999999 9999999999999999 44


Q ss_pred             H
Q psy8012         199 F  199 (271)
Q Consensus       199 ~  199 (271)
                      .
T Consensus       261 ~  261 (273)
T 2pnn_A          261 E  261 (273)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.4e-30  Score=207.14  Aligned_cols=162  Identities=21%  Similarity=0.226  Sum_probs=140.4

Q ss_pred             CCCCCChHHHHH---HhCCHHHHHHHHHCCCC-----------CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH
Q psy8012          10 PYEDHKPIAIAI---QIGDPQIVKELQNHGAQ-----------IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD   75 (271)
Q Consensus        10 ~~~g~t~L~~A~---~~g~~~~~~~Ll~~g~~-----------~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~   75 (271)
                      +..|.||||+|+   +.|+.+++++|++.|++           ++..+..|.||    ||+|+..|+.++          
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~----L~~A~~~g~~~~----------  108 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA----LHIAIERRCKHY----------  108 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCH----HHHHHHTTCHHH----------
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCH----HHHHHHcCCHHH----------
Confidence            477999999999   77999999999998744           44556689999    666655555555          


Q ss_pred             HHHHHHhcChHHHHHHHhcCCCCccCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---CCCCccccCCCC
Q psy8012          76 FLKNVRSNKYDEVKKNIEDGACINVSS--------------ERCGSALIYAAWKGYEEIVDLLLD---NGADVNFKSATG  138 (271)
Q Consensus        76 ~l~~a~~~~~~~~~~ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~  138 (271)
                                  +++|++.|++++..+              ..|.||||+|+..|+.+++++|++   .|++++..|..|
T Consensus       109 ------------v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g  176 (260)
T 3jxi_A          109 ------------VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG  176 (260)
T ss_dssp             ------------HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred             ------------HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCC
Confidence                        455555677888877              689999999999999999999999   999999999999


Q ss_pred             CcHHHHHHHhCCC---------HHHHHHHHhCCCCc-------cccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         139 FTALHMACRFHDD---------DSIVRKLLRHGAYY-------NVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       139 ~t~l~~a~~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      +||||+|+.. ++         .+++++|+++|+++       +..+. .|.||||+| ..|+.+++++|+++|++..
T Consensus       177 ~TpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          177 NTVLHALVAI-ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNN-DGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             CCHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHh-ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            9999999987 66         68999999999999       67888 999999999 9999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=5.4e-30  Score=190.57  Aligned_cols=149  Identities=26%  Similarity=0.269  Sum_probs=135.0

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..++.+ +++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|+||||+|+.. ++.+++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v   86 (162)
T 1ihb_A            9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTL   86 (162)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHH
Confidence            55555555555 666677788899999999999999999 999999999999999999999999999999999 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|+++|++++.++. .|.||||+| ..++.+++++|+++|++.                                    
T Consensus        87 ~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------  129 (162)
T 1ihb_A           87 QTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------------  129 (162)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------------
T ss_pred             HHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------------------
Confidence            999999999999998 999999999 999999999999998873                                    


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                          ++.+|..|.||||+|++.|+.+++++|.+.
T Consensus       130 ----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          130 ----VGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence                347899999999999999999999999764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=3e-29  Score=188.42  Aligned_cols=149  Identities=27%  Similarity=0.304  Sum_probs=132.5

Q ss_pred             HHHHHhcChHH-HHHHHhcCCC-CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGAC-INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                      |+.|+..++.+ ++.|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.++
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~   84 (172)
T 3v30_A            6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDI   84 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHH
Confidence            44444444444 5555555555 788899999999999999999999999999999999999999999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++                                  
T Consensus        85 v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------------------------------  129 (172)
T 3v30_A           85 VGLLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLT----------------------------------  129 (172)
T ss_dssp             HHHHHTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT----------------------------------
T ss_pred             HHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc----------------------------------
Confidence            9999999999999998 999999999 9999999999999998854                                  


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                             .+|..|.||||+|++.|+.+++++|.+.
T Consensus       130 -------~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A          130 -------TEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             -------CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             -------ccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence                   7899999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.2e-29  Score=189.36  Aligned_cols=158  Identities=28%  Similarity=0.353  Sum_probs=139.6

Q ss_pred             hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHH
Q psy8012          43 IYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVD  122 (271)
Q Consensus        43 ~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  122 (271)
                      +..|.+|    |+.|+..|+.++++.|++.                     .+.+++..+..|.||||+|+..|+.++++
T Consensus         5 ~~~~~~~----l~~A~~~g~~~~v~~ll~~---------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~   59 (165)
T 3twr_A            5 NSEADRQ----LLEAAKAGDVETVKKLCTV---------------------QSVNCRDIEGRQSTPLHFAAGYNRVSVVE   59 (165)
T ss_dssp             -CHHHHH----HHHHHHHTCHHHHHHHCCT---------------------TTTTCCCTTTTCCCHHHHHHHTTCHHHHH
T ss_pred             cchhhHH----HHHHHHhCCHHHHHHHHHc---------------------CCCCccccccCCCCHHHHHHHcChHHHHH
Confidence            4567788    7777777777777666553                     34566777888999999999999999999


Q ss_pred             HHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHH
Q psy8012         123 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKL  201 (271)
Q Consensus       123 ~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~  201 (271)
                      +|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++++  
T Consensus        60 ~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--  135 (165)
T 3twr_A           60 YLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPT--  135 (165)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--
T ss_pred             HHHhcCCCCCccCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCc--
Confidence            99999999999999999999999998 999999999999999999998 999999999 9999999999999998854  


Q ss_pred             hhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         202 MANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                                                             .+|..|.||+|+|++ |+.+++++|.+..
T Consensus       136 ---------------------------------------~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          136 ---------------------------------------KKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             ---------------------------------------CCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             ---------------------------------------ccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence                                                   789999999999877 8999999998753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=4.9e-29  Score=188.57  Aligned_cols=156  Identities=26%  Similarity=0.235  Sum_probs=136.9

Q ss_pred             cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012          45 SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL  124 (271)
Q Consensus        45 ~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  124 (271)
                      .+.++    |+.|+..|+.+++++|++.+                     +.+++..+..|.||||+|+..|+.+++++|
T Consensus         4 ~~~~~----l~~A~~~g~~~~v~~ll~~~---------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   58 (179)
T 3f6q_A            4 EFMDD----IFTQCREGNAVAVRLWLDNT---------------------ENDLNQGDDHGFSPLHWACREGRSAVVEML   58 (179)
T ss_dssp             ---CC----HHHHHHHTCHHHHHHHHHCT---------------------TSCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHH----HHHHHHcCCHHHHHHHHhcC---------------------cccccccCCCCCCHHHHHHHcCcHHHHHHH
Confidence            45666    66666666666665555442                     567888999999999999999999999999


Q ss_pred             HHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhh
Q psy8012         125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMA  203 (271)
Q Consensus       125 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~  203 (271)
                      ++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|+++     
T Consensus        59 l~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-----  131 (179)
T 3f6q_A           59 IMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGALV-----  131 (179)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCS-----
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence            999999999999999999999998 999999999999999999998 999999999 999999999999999884     


Q ss_pred             cCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         204 NNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       204 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                          +.+|..|.||+++|++.++.+++++|.+.
T Consensus       132 ------------------------------------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A          132 ------------------------------------SICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             ------------------------------------SBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             ------------------------------------chhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence                                                47899999999999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.1e-28  Score=182.36  Aligned_cols=146  Identities=25%  Similarity=0.267  Sum_probs=128.6

Q ss_pred             HHHHHhcChHH-HHHHHhc-CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIED-GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                      |+.|+..++.+ ++.|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|+||||+|+.. ++.++
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~   83 (156)
T 1bd8_A            6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHH
Confidence            33344444444 4444444 45788899999999999 999999999999999999999999999999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++|+++|++++.++. .|.||||+| ..++.+++++|+++ ++                                    
T Consensus        84 v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------------------------------  125 (156)
T 1bd8_A           84 LKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAE-SD------------------------------------  125 (156)
T ss_dssp             HHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHTT-SC------------------------------------
T ss_pred             HHHHHHcCCCCCCcCC-CCCcHHHHHHHhChHHHHHHHHhc-cC------------------------------------
Confidence            9999999999999998 899999999 99999999999988 65                                    


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                           ++.+|..|.||||+|++.|+.+++++|.+
T Consensus       126 -----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          126 -----LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             -----TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             -----CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence                 34789999999999999999999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=8.8e-31  Score=219.38  Aligned_cols=234  Identities=13%  Similarity=0.036  Sum_probs=148.6

Q ss_pred             ChHHHHHH-hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc------H-------HHHHH
Q psy8012          15 KPIAIAIQ-IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL------D-------FLKNV   80 (271)
Q Consensus        15 t~L~~A~~-~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~------~-------~l~~a   80 (271)
                      +++++|.. .++.+++++++++|.+.       .||    ||+|+..|+.+++++|++.|+      .       +||+|
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~----Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A  135 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIKS-------EVI----CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA  135 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCCH-------HHH----HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCCc-------CCH----HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence            34555554 35566666666655432       355    666666666666666666654      2       36777


Q ss_pred             HhcChHH-HHHHHhcCCC---CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccc--cCCCCCcHHHHHH-HhCCCHH
Q psy8012          81 RSNKYDE-VKKNIEDGAC---INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNF--KSATGFTALHMAC-RFHDDDS  153 (271)
Q Consensus        81 ~~~~~~~-~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~  153 (271)
                      +..|+.+ +++|++.|++   .+..+.+ .||||+|+..|+.+++++|+++|++++.  .+..|+||||+|+ .. |+.+
T Consensus       136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~-G~~e  213 (376)
T 2aja_A          136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR-GHHN  213 (376)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT-CCHH
T ss_pred             HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC-CCHH
Confidence            7777777 7777777754   2222223 7889999999999999998888888776  7777888999888 87 8888


Q ss_pred             HHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCccc-ccc------------hHHHHHH
Q psy8012         154 IVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTI-LDR------------LDEMKSL  219 (271)
Q Consensus       154 ~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~-~~~------------~~~~~~l  219 (271)
                      ++++|++.|+        .|.||||+| ..|+.+++++|+++|++++..+....... ...            ...++.|
T Consensus       214 iv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~l  285 (376)
T 2aja_A          214 VINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL  285 (376)
T ss_dssp             HHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHH
Confidence            8998888663        367888888 88888888999888888765543221111 011            1122333


Q ss_pred             HhhccCCCC-------CCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHh
Q psy8012         220 ILEGTKEFG-------PGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA  269 (271)
Q Consensus       220 ~~~~~~~~~-------~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~  269 (271)
                      +..+.....       .....+.-.........+.|||++|++.|+.+++++|.+.+
T Consensus       286 i~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             HHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh
Confidence            333321100       00000000001234456789999999999999999997654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=2.1e-28  Score=180.98  Aligned_cols=143  Identities=15%  Similarity=0.074  Sum_probs=113.3

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      ..+..|.||||+|++.|+.+++++|+++|++++.++..|.||    |                       |+|+ .++.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L-----------------------~~A~-~~~~~   58 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP----I-----------------------QVMM-MGSAR   58 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCT----T-----------------------TSSC-TTCHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH----H-----------------------HHHH-cCCHH
Confidence            446789999999999999999999999999999999999999    4                       4443 44555


Q ss_pred             -HHHHHhcCCCCccCCCCCCc-HHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCc
Q psy8012          88 -VKKNIEDGACINVSSERCGS-ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY  165 (271)
Q Consensus        88 -~~~ll~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~  165 (271)
                       +++|++.|++++.++..|.| |||+|+..|+.+++++|+++|++++..+..|+||||+|+.. ++.+++++|+++|+++
T Consensus        59 ~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~v~~Ll~~ga~~  137 (156)
T 1bi7_B           59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRAAAGGT  137 (156)
T ss_dssp             HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSSCC---
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CHHHHHHHHHHcCCCC
Confidence             67777788899999999999 99999999999999999999999999999999999999999 9999999999999999


Q ss_pred             cccCCCCCCCHHHHH
Q psy8012         166 NVVDGKTGKTPLLHA  180 (271)
Q Consensus       166 ~~~~~~~g~tpL~~A  180 (271)
                      +.++. .|.||.+.+
T Consensus       138 ~~~~~-~g~t~~~~~  151 (156)
T 1bi7_B          138 RGSNH-ARIDAAEGP  151 (156)
T ss_dssp             ---------------
T ss_pred             CccCc-CcCcccccC
Confidence            99998 899998643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=6.4e-28  Score=174.24  Aligned_cols=135  Identities=18%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHH
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVR   81 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~   81 (271)
                      |...-...+..|.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+. ++.++                
T Consensus         1 G~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~-~~~~~----------------   59 (136)
T 1d9s_A            1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRP----IQVMMM-GSAQV----------------   59 (136)
T ss_dssp             CCCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTT----TTTSTT-SCHHH----------------
T ss_pred             CCCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCH----HHHHHc-CCHHH----------------
Confidence            444455667789999999999999999999999999999888889999    555444 44444                


Q ss_pred             hcChHHHHHHHhcCCCCccCCCC-CCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          82 SNKYDEVKKNIEDGACINVSSER-CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        82 ~~~~~~~~~ll~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                            +++|++.|++++.++.. |.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++
T Consensus        60 ------v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~  132 (136)
T 1d9s_A           60 ------AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHA  132 (136)
T ss_dssp             ------HHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHH
T ss_pred             ------HHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence                  45555567778888888 88888888888888888888888888888888888888888887 88888888888


Q ss_pred             CCCC
Q psy8012         161 HGAY  164 (271)
Q Consensus       161 ~g~~  164 (271)
                      +|+|
T Consensus       133 ~Gad  136 (136)
T 1d9s_A          133 ATGD  136 (136)
T ss_dssp             HHCC
T ss_pred             cCCC
Confidence            8775

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=7.6e-28  Score=182.85  Aligned_cols=161  Identities=15%  Similarity=0.125  Sum_probs=136.7

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchh-hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEI-YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKK   90 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~   90 (271)
                      +.++|+.|++.|+.+.++.++..+.  +..+ ..|.||    ||+|+..++.+.                   ..+ +++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~----Lh~A~~~~~~~~-------------------~~~iv~~   60 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNI----LYDVLRNNNDEA-------------------RYKISMF   60 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTH----HHHHTTCSCHHH-------------------HHHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCH----HHHHHHcCCcch-------------------HHHHHHH
Confidence            5689999999999999999998765  4555 789999    666655443210                   123 677


Q ss_pred             HHhcCCCCccCCCCCCcHHHHHHHhCC------HHHHHHHHHCCCCccccCCCCC-cHHHHHHHhC----CCHHHHHHHH
Q psy8012          91 NIEDGACINVSSERCGSALIYAAWKGY------EEIVDLLLDNGADVNFKSATGF-TALHMACRFH----DDDSIVRKLL  159 (271)
Q Consensus        91 ll~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-t~l~~a~~~~----~~~~~~~~Ll  159 (271)
                      |++.|++++.++..|.||||+|+..++      .+++++|++.|++++..|..|+ ||||+|+..+    +..+++++|+
T Consensus        61 Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll  140 (186)
T 3t8k_A           61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF  140 (186)
T ss_dssp             HHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHH
Confidence            788899999999999999999999986      6889999999999999999999 9999999841    3356899999


Q ss_pred             h-CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHH
Q psy8012         160 R-HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIF  199 (271)
Q Consensus       160 ~-~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~  199 (271)
                      + +|++++.++. .|+||||+| ..++.+++++|.++....+
T Consensus       141 ~~~gad~~~~d~-~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          141 SQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             TSTTCCTTCCCT-TSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             HhcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9 9999999999 999999999 9999999999998876654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=2.4e-27  Score=171.24  Aligned_cols=133  Identities=23%  Similarity=0.199  Sum_probs=119.6

Q ss_pred             CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHh
Q psy8012          36 GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWK  115 (271)
Q Consensus        36 g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~  115 (271)
                      +++++.++..|.||    ||+|+..++.++                      +++|++.|++++.++..|.||||+|+. 
T Consensus         2 ~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~~Ll~~g~~~~~~~~~g~t~L~~A~~-   54 (136)
T 1d9s_A            2 SPGIHMLGGSSDAG----LATAAARGQVET----------------------VRQLLEAGADPNALNRFGRRPIQVMMM-   54 (136)
T ss_dssp             CCCCSCCCCCCSCH----HHHHHHTTCHHH----------------------HHHHHHTTCCTTCCCTTCCTTTTTSTT-
T ss_pred             CCCccCCCCCCccH----HHHHHHcCCHHH----------------------HHHHHHcCCCcCCcCCCCCCHHHHHHc-
Confidence            57889999999999    555555554444                      555566778899999999999999999 


Q ss_pred             CCHHHHHHHHHCCCCccccCCC-CCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh
Q psy8012         116 GYEEIVDLLLDNGADVNFKSAT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY  193 (271)
Q Consensus       116 ~~~~~~~~Ll~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~  193 (271)
                      ++.+++++|++.|++++..+.. |+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|++
T Consensus        55 ~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           55 GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999 99999999999 999999999999999999998 999999999 9999999999999


Q ss_pred             chhh
Q psy8012         194 FIHE  197 (271)
Q Consensus       194 ~g~~  197 (271)
                      +|++
T Consensus       133 ~Gad  136 (136)
T 1d9s_A          133 ATGD  136 (136)
T ss_dssp             HHCC
T ss_pred             cCCC
Confidence            9975

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=8.7e-28  Score=182.54  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=119.0

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCC-CCCCcHHHHHHHhCCH----HHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSS-ERCGSALIYAAWKGYE----EIVDLLLDNGADVNFKSATGFTALHMACRFHD  150 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  150 (271)
                      ++.|+..|+.+ ++.++..+.  +..+ ..|.||||+|+..++.    +++++|++.|++++..+..|+||||+|+.. +
T Consensus        10 l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~   86 (186)
T 3t8k_A           10 VSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-G   86 (186)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-C
T ss_pred             HHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-C
Confidence            34444444444 444454443  3344 6799999999999975    589999999999999999999999999998 6


Q ss_pred             C------HHHHHHHHhCCCCccccCCCCCC-CHHHHH-hcCC-----chHHHHHHh-chhhHHHHhhcCCcccccchHHH
Q psy8012         151 D------DSIVRKLLRHGAYYNVVDGKTGK-TPLLHA-GKGA-----REVNTVLLY-FIHEIFKLMANNDTTILDRLDEM  216 (271)
Q Consensus       151 ~------~~~~~~Ll~~g~~~~~~~~~~g~-tpL~~A-~~~~-----~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~  216 (271)
                      +      .+++++|+++|+++|.++. .|. ||||+| ..+.     .+++++|++ +|++                   
T Consensus        87 ~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-------------------  146 (186)
T 3t8k_A           87 GNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-------------------  146 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-------------------
T ss_pred             CcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-------------------
Confidence            5      5789999999999999998 899 999999 6433     346677776 6666                   


Q ss_pred             HHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         217 KSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                            ++.+|..|.||||+|++.|+.+++++|.+.
T Consensus       147 ----------------------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          147 ----------------------LLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             ----------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                                  458999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=2.6e-27  Score=187.34  Aligned_cols=155  Identities=20%  Similarity=0.210  Sum_probs=114.0

Q ss_pred             hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHH
Q psy8012          44 YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL  123 (271)
Q Consensus        44 ~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  123 (271)
                      ..|.||    ||.|+..++.++++.|                      ++.|++++.. ..+.||||.|+..|+.+++++
T Consensus         3 ~~g~t~----L~~a~~~~~~~~~~~l----------------------l~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~   55 (239)
T 1ycs_B            3 ITGQVS----LPPGKRTNLRKTGSER----------------------IAHGMRVKFN-PLPLALLLDSSLEGEFDLVQR   55 (239)
T ss_dssp             -------------------------------------------------------------CHHHHHHHHHHTCHHHHHH
T ss_pred             cccccc----CchhhhhhhHHHHHHH----------------------hccCCCcccC-chhhHHHHHHHHcCCHHHHHH
Confidence            357888    6666665555555555                      4455566543 678999999999999999999


Q ss_pred             HHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHh
Q psy8012         124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLM  202 (271)
Q Consensus       124 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~  202 (271)
                      |++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|+||||+| ..++.+++++|+++|++++   
T Consensus        56 Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---  130 (239)
T 1ycs_B           56 IIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVF---  130 (239)
T ss_dssp             HTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT---
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCcc---
Confidence            9999999999999999999999999 999999999999999999998 999999999 9999999999999999854   


Q ss_pred             hcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCc-hHHHHH--HHhCCCcHHHHHHHH
Q psy8012         203 ANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGE-TILDIA--KKRGFPLLEELEKKL  268 (271)
Q Consensus       203 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~-tpl~~A--~~~~~~~~~~ll~~~  268 (271)
                                                            .+|..|. ||+|+|  +..|+.+++++|.+.
T Consensus       131 --------------------------------------~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B          131 --------------------------------------AMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             --------------------------------------CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             --------------------------------------eecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence                                                  6777776 999999  889999999999764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=5.2e-26  Score=161.55  Aligned_cols=126  Identities=33%  Similarity=0.453  Sum_probs=99.2

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN   91 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l   91 (271)
                      +|.||||.|++.|+.+++++|+++|++++..+..|.||    ||+|+..++.+++++|                      
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~~~~L----------------------   54 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----LHLAARNGHLEVVKLL----------------------   54 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH----------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH----HHHHHHcCcHHHHHHH----------------------
Confidence            58899999999999999999999999888888888888    6666555555554444                      


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012          92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY  164 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~  164 (271)
                      ++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.. ++.+++++|+++|+|
T Consensus        55 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCC
T ss_pred             HHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCC
Confidence            445666777777788888888888888888888888888887777888888888887 888888888887765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=2.6e-26  Score=165.74  Aligned_cols=130  Identities=22%  Similarity=0.220  Sum_probs=90.1

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY   85 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~   85 (271)
                      .......|.||||+|++.|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|                
T Consensus         7 ~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~v~~L----------------   66 (136)
T 2jab_A            7 HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTP----LYLATAHGHLEIVEVL----------------   66 (136)
T ss_dssp             -----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHH----------------
T ss_pred             CCcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCCHHHHHHH----------------
Confidence            34445667888888888888888888888888888777777777    5555555444444333                


Q ss_pred             HHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCC
Q psy8012          86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG  162 (271)
Q Consensus        86 ~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g  162 (271)
                            ++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|
T Consensus        67 ------l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~~G  136 (136)
T 2jab_A           67 ------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQKLN  136 (136)
T ss_dssp             ------HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHC-
T ss_pred             ------HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHHcC
Confidence                  444566677777777777777777777777777777777777777777777777776 7777777777654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1e-26  Score=171.85  Aligned_cols=131  Identities=22%  Similarity=0.196  Sum_probs=110.5

Q ss_pred             CchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHH
Q psy8012          40 DKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEE  119 (271)
Q Consensus        40 ~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~  119 (271)
                      +..+..|.||    ||+|+..|+.+++                      ++|++.|++++..+..|.||||+|+ .|+.+
T Consensus         6 ~~~~~~~~t~----L~~A~~~g~~~~v----------------------~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~   58 (156)
T 1bi7_B            6 GSSMEPSADW----LATAAARGRVEEV----------------------RALLEAGANPNAPNSYGRRPIQVMM-MGSAR   58 (156)
T ss_dssp             ----CCSTTH----HHHHHHHTCHHHH----------------------HHHHTTTCCTTCCCSSSCCTTTSSC-TTCHH
T ss_pred             cCCCccchHH----HHHHHHcCCHHHH----------------------HHHHHcCCCCCCCCCCCCCHHHHHH-cCCHH
Confidence            3456678888    6666655555555                      5555567889999999999999985 99999


Q ss_pred             HHHHHHHCCCCccccCCCCCc-HHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         120 IVDLLLDNGADVNFKSATGFT-ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       120 ~~~~Ll~~~~~~~~~~~~~~t-~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      ++++|++.|++++..+..|+| |||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus        59 ~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~v~~Ll~~ga~  136 (156)
T 1bi7_B           59 VAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARYLRAAAGG  136 (156)
T ss_dssp             HHHHHHTTTCCCCCCCTTTCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHSSCC--
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHHC-CCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHhCHHHHHHHHHHcCCC
Confidence            999999999999999999999 99999999 999999999999999999998 899999999 99999999999999999


Q ss_pred             HH
Q psy8012         198 IF  199 (271)
Q Consensus       198 ~~  199 (271)
                      ++
T Consensus       137 ~~  138 (156)
T 1bi7_B          137 TR  138 (156)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=4e-26  Score=164.78  Aligned_cols=123  Identities=37%  Similarity=0.441  Sum_probs=106.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-
Q psy8012         102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-  180 (271)
Q Consensus       102 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-  180 (271)
                      ...+.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|++.|++++..+. .|.||||+| 
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAVDA-IGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence            34567899999999999999999999988888888899999999988 899999999999999998888 899999999 


Q ss_pred             hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCc
Q psy8012         181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPL  260 (271)
Q Consensus       181 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~  260 (271)
                      ..++.+++++|+++|++++                                         .+|..|.||||+|++.|+.+
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~-----------------------------------------~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVN-----------------------------------------AQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCc-----------------------------------------CcCCCCCCHHHHHHHCCCHH
Confidence            8888999999988887743                                         67888999999999999999


Q ss_pred             HHHHHHH
Q psy8012         261 LEELEKK  267 (271)
Q Consensus       261 ~~~ll~~  267 (271)
                      ++++|.+
T Consensus       128 ~~~~Ll~  134 (136)
T 2jab_A          128 LAEILQK  134 (136)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.9e-27  Score=170.97  Aligned_cols=131  Identities=29%  Similarity=0.336  Sum_probs=117.9

Q ss_pred             CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012          95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK  174 (271)
Q Consensus        95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  174 (271)
                      |+++ .++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTTGY-QND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCG-GGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCcCC-CCC
Confidence            4566 6788999999999999999999999999999999999999999999998 999999999999999999998 899


Q ss_pred             CHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHH
Q psy8012         175 TPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIA  253 (271)
Q Consensus       175 tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A  253 (271)
                      ||||+| ..++.+++++|+++|++++                                         .+|..|.||+|+|
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~tpl~~A  116 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRN-----------------------------------------AVNIFGLRPVDYT  116 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCGGGGC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC-----------------------------------------CCCCCCCCHHHHH
Confidence            999999 9999999999999998854                                         7899999999999


Q ss_pred             HHhCCCcHHHHHHHHh
Q psy8012         254 KKRGFPLLEELEKKLA  269 (271)
Q Consensus       254 ~~~~~~~~~~ll~~~~  269 (271)
                      +..+..++++++++..
T Consensus       117 ~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A          117 DDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCHHHHHHHSCC----
T ss_pred             hhccHHHHHhhccccc
Confidence            9999999998887743

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=6.9e-27  Score=183.59  Aligned_cols=160  Identities=15%  Similarity=0.042  Sum_probs=114.8

Q ss_pred             HHHHHHCCCCCCchhh---cccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhc
Q psy8012          29 VKELQNHGAQIDKEIY---SKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIED   94 (271)
Q Consensus        29 ~~~Ll~~g~~~~~~~~---~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~   94 (271)
                      ++.|+++|++++..+.   .+.||    ||+|+..|+.+++++|++.|+++          ||+|+..++.+ +++|++.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~----L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVL----LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHH----HHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CeehhccCCCCccccccccchhHH----HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            4567777777664443   45555    88888888888888888876654          88888888888 8888888


Q ss_pred             CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHH--HHhCCCHHHHHHHHhCCCCccccCCC
Q psy8012          95 GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMA--CRFHDDDSIVRKLLRHGAYYNVVDGK  171 (271)
Q Consensus        95 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~~Ll~~g~~~~~~~~~  171 (271)
                      |++++.+|..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|  +.. ++.+++++|++.|++++..+. 
T Consensus        77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~-~~~~~v~~Ll~~ga~~~~~~~-  154 (229)
T 2vge_A           77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE-GYADCATYLADVEQSMGLMNS-  154 (229)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTST-THHHHHHHHHHHHHHTTTSGG-
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhc-ChHHHHHHHHHcCCCcccccC-
Confidence            88888888888888888888888888888888888888775 5788888888  766 888888888888888888877 


Q ss_pred             CCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         172 TGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       172 ~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      .|.||++.+ ....   .++|++.|++
T Consensus       155 ~~~~~l~~~~~~~~---~~~ll~~ga~  178 (229)
T 2vge_A          155 GAVYALWDYSAEFG---DELSFREGES  178 (229)
T ss_dssp             GEEEESSCBCCSST---TBCCBCTTCE
T ss_pred             CchHHHHHHhhccc---cccCcccccc
Confidence            777887755 3322   2456666666

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=5e-26  Score=164.40  Aligned_cols=128  Identities=23%  Similarity=0.204  Sum_probs=82.7

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcCh
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKY   85 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~   85 (271)
                      |++.|.+|.||||+|+..|+.+++++|++.|++++.++..|.||    ||+|+..++.++                    
T Consensus         3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~----L~~A~~~~~~~~--------------------   58 (137)
T 3c5r_A            3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP----LHEACNHGHLKV--------------------   58 (137)
T ss_dssp             -CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHTTCHHH--------------------
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH----HHHHHHcCCHHH--------------------
Confidence            44788899999999999999999999999988888777777777    444433333333                    


Q ss_pred             HHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          86 DEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        86 ~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                        +++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||+++|+.. +..+++++|.+
T Consensus        59 --~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~-~~~~~l~~l~~  130 (137)
T 3c5r_A           59 --VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE-SMKSLLLLPEK  130 (137)
T ss_dssp             --HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH-HHHHHHSCC--
T ss_pred             --HHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc-cHHHHHhhccc
Confidence              3333444555566666666666666666666666666666666666666666666666555 55555544443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.2e-24  Score=154.45  Aligned_cols=125  Identities=36%  Similarity=0.408  Sum_probs=111.6

Q ss_pred             cccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012          45 SKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL  124 (271)
Q Consensus        45 ~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  124 (271)
                      +|.||    ||+|+..|+.+++++|                      ++.|++++..+..|.||||+|+..++.+++++|
T Consensus         1 ~g~t~----L~~A~~~~~~~~v~~L----------------------l~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   54 (126)
T 1n0r_A            1 NGRTP----LHLAARNGHLEVVKLL----------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL   54 (126)
T ss_dssp             CCCCH----HHHHHHHTCHHHHHHH----------------------HHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCccH----HHHHHHcCcHHHHHHH----------------------HHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHH
Confidence            36778    6666666555555554                      556778888999999999999999999999999


Q ss_pred             HHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       125 l~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      ++.|++++..+..|.||||+|+.. ++.+++++|+++|++++.++. .|.|||++| ..++.+++++|+++|++
T Consensus        55 l~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           55 LEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHcCCCCcccCCCCCcHHHHHHHc-ChHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999998 999999999999999999998 899999999 99999999999999875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=2.5e-26  Score=174.34  Aligned_cols=131  Identities=24%  Similarity=0.318  Sum_probs=115.4

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~  154 (271)
                      ||.|+..++.+ ++.|++ +++++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|+.. ++.++
T Consensus        48 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~-~~~~~  125 (183)
T 3deo_A           48 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEV  125 (183)
T ss_dssp             HHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc-CcHHH
Confidence            55555556566 666677 78899999999999999999999999999999999999888 8999999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++|+++|++++.++. .|.||||+| ..+                                                  
T Consensus       126 v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~--------------------------------------------------  154 (183)
T 3deo_A          126 VEALVELGADIEVEDE-RGLTALELAREIL--------------------------------------------------  154 (183)
T ss_dssp             HHHHHHHTCCTTCCCT-TSCCHHHHHHHHH--------------------------------------------------
T ss_pred             HHHHHHcCCCCcCCCC-CCCCHHHHHHHhc--------------------------------------------------
Confidence            9999999999999998 999999999 421                                                  


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                              ....+.||+++|++.|..+++++|++.
T Consensus       155 --------~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          155 --------KTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             --------HTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------cCcccccHHHHHHHcCHHHHHHHHHHh
Confidence                    234678999999999999999999864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=5.4e-27  Score=196.42  Aligned_cols=211  Identities=9%  Similarity=0.010  Sum_probs=154.4

Q ss_pred             hCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHH-HHhHHHHHHHHHcCcH---HHHHHHhcChHH-HHHHHhcCCC
Q psy8012          23 IGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALE-LEERKAINDLLRLNLD---FLKNVRSNKYDE-VKKNIEDGAC   97 (271)
Q Consensus        23 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~-~~~~~~~~~L~~~g~~---~l~~a~~~~~~~-~~~ll~~~~~   97 (271)
                      .+..+.+..++....+++  ...+.++    +++|.. .++.++++++++.|.+   +||+|+..|+.+ +++|++.|+.
T Consensus        44 ~~~~~~~~~~~~~~~~~~--~~~~ll~----~~~a~~~~~~~~~~~~l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~  117 (376)
T 2aja_A           44 LSYKEAIHIFLPGTKNME--QVRQLLC----LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS  117 (376)
T ss_dssp             SCHHHHHHHCCCCSSHHH--HHHHHHH----HHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C
T ss_pred             ccHHHHHHHHhcCCCCHH--HHHHHHH----HHHHHhcCCCHHHHHHHHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCc
Confidence            344566666665544332  2235566    777766 5778899999998864   499999999999 9999999873


Q ss_pred             C---ccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc--cC
Q psy8012          98 I---NVSSERCGSALIYAAWKGYEEIVDLLLDNGADV---NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV--VD  169 (271)
Q Consensus        98 ~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~--~~  169 (271)
                      .   +..+..+.||||+|+..|+.+++++|++.|+++   +..+.. +||||+|+.. |+.+++++|+++|++++.  .+
T Consensus       118 ~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~-G~~eiv~~Ll~~ga~~~~~~~d  195 (376)
T 2aja_A          118 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQ  195 (376)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-CCHHHHHHHHHcCCccchhccC
Confidence            2   233456788999999999999999999999762   322223 8999999998 999999999999999887  77


Q ss_pred             CCCCCCHHHHH--hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCc
Q psy8012         170 GKTGKTPLLHA--GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGE  247 (271)
Q Consensus       170 ~~~g~tpL~~A--~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~  247 (271)
                      . .|.||||+|  ..|+.+++++|+++|++.  ......+......+++++|+..|++             ++.+|    
T Consensus       196 ~-~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~--~taL~~Aa~~g~~evv~lL~~~ga~-------------~~~~~----  255 (376)
T 2aja_A          196 A-ENYYAFRWAAVGRGHHNVINFLLDCPVML--AYAEIHEFEYGEKYVNPFIARHVNR-------------LKEMH----  255 (376)
T ss_dssp             H-HHHHHHHHHHSTTCCHHHHHHHTTSHHHH--HHHHHCTTTTTTTTHHHHHHHHHHH-------------HHHHH----
T ss_pred             C-CCCCHHHHHHHHCCCHHHHHHHHhCCCcc--chHHHHHHHCCCHHHHHHHHhcCcc-------------ccccc----
Confidence            7 799999988  578999999999988752  2223334445668899999998877             22222    


Q ss_pred             hHHHHHHHhCCCcH
Q psy8012         248 TILDIAKKRGFPLL  261 (271)
Q Consensus       248 tpl~~A~~~~~~~~  261 (271)
                      ++++.|+..|+.++
T Consensus       256 ~~l~~A~~~g~~~v  269 (376)
T 2aja_A          256 DAFKLSNPDGVFDL  269 (376)
T ss_dssp             TTTTTTSSSSCCCC
T ss_pred             HHHHHHHHCCChhh
Confidence            35566666666663

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=1.7e-24  Score=153.40  Aligned_cols=111  Identities=27%  Similarity=0.282  Sum_probs=97.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-
Q psy8012         102 SERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-  180 (271)
Q Consensus       102 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-  180 (271)
                      +..|.||||+|+..|+.+++++|++.|.+++..+..|+||||+|+.. ++.+++++|++.|++++.++. .|+||||+| 
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAPDK-HHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHH
Confidence            45678999999999999999999999999999999999999999998 999999999999999999998 899999999 


Q ss_pred             hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHH
Q psy8012         181 GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKK  255 (271)
Q Consensus       181 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~  255 (271)
                      ..++.+++++|+++|++++                                         .+|..|.||+|+|..
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~-----------------------------------------~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKT-----------------------------------------VKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHcCCCCC-----------------------------------------CcCCCCCCHHHHhCC
Confidence            8999999999999988743                                         789999999999943

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.4e-24  Score=172.06  Aligned_cols=142  Identities=24%  Similarity=0.207  Sum_probs=123.8

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK   89 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~   89 (271)
                      +.+|.||||+|++.|+.+++++|++ |++++.++..|.||    ||+|+..|+.++++                      
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~----L~~A~~~g~~~~v~----------------------   94 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA----LLFVAGLGSDKCVR----------------------   94 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBH----HHHHHHHTCHHHHH----------------------
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCH----HHHHHHCCCHHHHH----------------------
Confidence            3478999999999999999999999 99999999999999    66666666555554                      


Q ss_pred             HHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012          90 KNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        90 ~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~  168 (271)
                      +|++.|++++.++ ..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. +..                
T Consensus        95 ~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-~~~----------------  157 (244)
T 3ui2_A           95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LKT----------------  157 (244)
T ss_dssp             HHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-HTT----------------
T ss_pred             HHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-Hhc----------------
Confidence            4555678888888 7899999999999999999999999999999999999999999975 221                


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                       . .+.|||++| ..|+.+++++|.+.+.+
T Consensus       158 -~-~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 -T-PKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             -C-CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             -c-CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence             3 689999999 99999999999988665

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=8.5e-25  Score=165.83  Aligned_cols=139  Identities=24%  Similarity=0.196  Sum_probs=121.6

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK   89 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~   89 (271)
                      +.+|.||||+|+..|+.+++++|++ |++++.++..|.||    ||+|+..|+.++++                      
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~----L~~A~~~~~~~~v~----------------------   93 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTA----LLFVAGLGSDKCVR----------------------   93 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCH----HHHHHHHTCHHHHH----------------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCH----HHHHHHcCCHHHHH----------------------
Confidence            4578999999999999999999999 99999999999999    66666666555554                      


Q ss_pred             HHHhcCCCCccCC-CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCcccc
Q psy8012          90 KNIEDGACINVSS-ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV  168 (271)
Q Consensus        90 ~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~  168 (271)
                      +|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+.. ++.                
T Consensus        94 ~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~----------------  156 (183)
T 3deo_A           94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LKT----------------  156 (183)
T ss_dssp             HHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-HHT----------------
T ss_pred             HHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh-ccC----------------
Confidence            4555678888888 8899999999999999999999999999999999999999999986 322                


Q ss_pred             CCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         169 DGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       169 ~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                       . .+.+||++| ..+..+++++|.++
T Consensus       157 -~-~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 -T-PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             -C-CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             -c-ccccHHHHHHHcCHHHHHHHHHHh
Confidence             3 678999999 99999999999865

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=3e-24  Score=175.21  Aligned_cols=121  Identities=24%  Similarity=0.241  Sum_probs=114.5

Q ss_pred             HHHHHHHhcChHH-HHHHHhcCCCCcc------CCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHH
Q psy8012          75 DFLKNVRSNKYDE-VKKNIEDGACINV------SSERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHM  144 (271)
Q Consensus        75 ~~l~~a~~~~~~~-~~~ll~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~  144 (271)
                      +.|+.|+..++.+ ++.|+..|++++.      .+..|.||||+|+..   ++.+++++|+++|++++..|..|+||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            3499999999999 9999999999988      688999999999997   89999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         145 ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       145 a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      |+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus       233 A~~~-g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          233 AALY-NQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHT-TCHHHHHHHHHTTCCCSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9998 999999999999999999998 999999999 99999999999998775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=5.1e-24  Score=168.89  Aligned_cols=131  Identities=24%  Similarity=0.326  Sum_probs=117.0

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~  154 (271)
                      ||.|+..++.+ ++.|++ +++++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|+||||+|+.. ++.++
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~-g~~~~  126 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEV  126 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc-CCHHH
Confidence            55566666666 677777 78999999999999999999999999999999999999888 8899999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++|+++|++++.++. .|.||||+| ..                                                   
T Consensus       127 v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~---------------------------------------------------  154 (244)
T 3ui2_A          127 VEALVELGADIEVEDE-RGLTALELAREI---------------------------------------------------  154 (244)
T ss_dssp             HHHHHHTTCCTTCCCT-TCCCHHHHHHHH---------------------------------------------------
T ss_pred             HHHHHHCCCCCCCCCC-CCCcHHHHHHHH---------------------------------------------------
Confidence            9999999999999998 999999999 31                                                   


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                             ..+..+.|||++|++.|+.+++++|.+.
T Consensus       155 -------~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          155 -------LKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             -------HTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence                   1345789999999999999999999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=1.5e-24  Score=169.42  Aligned_cols=101  Identities=23%  Similarity=0.187  Sum_probs=44.8

Q ss_pred             CCCccCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC
Q psy8012          96 ACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK  174 (271)
Q Consensus        96 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~  174 (271)
                      ++++.++..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.
T Consensus        97 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~  174 (222)
T 3ehr_A           97 VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK-GYADIVQLLLAKGARTDLRNI-EKK  174 (222)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCSCCCCT-TSC
T ss_pred             CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccC-CCC
Confidence            33444444444444444444444444444444 444444444455555555544 445555555555555554444 455


Q ss_pred             CHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         175 TPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       175 tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      |||++| ..+..++++.|++.|+..
T Consensus       175 t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          175 LAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             CHHHHCCSHHHHHHHC---------
T ss_pred             CHHHHhcchhHHHHHHHHhccchhh
Confidence            555555 444444554444444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=7.7e-24  Score=149.98  Aligned_cols=110  Identities=25%  Similarity=0.330  Sum_probs=56.2

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVK   89 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~   89 (271)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|.||    ||+|+..++.++                      ++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~----L~~A~~~~~~~~----------------------v~   57 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKP----LHYAADCGQLEI----------------------LE   57 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCH----HHHHHHTTCHHH----------------------HH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcH----HHHHHHcCCHHH----------------------HH
Confidence            3456677777777777777777777766666655555555    333322222222                      23


Q ss_pred             HHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHH
Q psy8012          90 KNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMA  145 (271)
Q Consensus        90 ~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a  145 (271)
                      +|++.|++++.+|..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus        58 ~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            33333444444444455555555555555555555555555444444555555544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=171.51  Aligned_cols=140  Identities=22%  Similarity=0.153  Sum_probs=117.4

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCc------hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDK------EIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~------~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      +.++|+.|+..|+.+.++.|++.|++++.      .+..|.||    ||+|+..++                    .++.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~----Lh~A~~~~~--------------------~~~~  206 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELV----LHLAVKVAN--------------------QASL  206 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECH----HHHHHHTCC--------------------TTTH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccH----HHHHHHhcc--------------------cCcH
Confidence            44679999999999999999999999987      68899999    666655410                    1444


Q ss_pred             H-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCc
Q psy8012          87 E-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY  165 (271)
Q Consensus        87 ~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~  165 (271)
                      + +++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++ 
T Consensus       207 ~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~ga~-  284 (301)
T 2b0o_E          207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAG-  284 (301)
T ss_dssp             HHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhcCC-
Confidence            4 6666777889999999999999999999999999999999999999999999999999999 999999999998865 


Q ss_pred             cccCCCCCCCHHHHH-hcCC
Q psy8012         166 NVVDGKTGKTPLLHA-GKGA  184 (271)
Q Consensus       166 ~~~~~~~g~tpL~~A-~~~~  184 (271)
                            .|.||||+| .+|+
T Consensus       285 ------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          285 ------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             ------TTSSCCC-------
T ss_pred             ------CCCChhHHHHhcCC
Confidence                  478999999 7664

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=4.2e-22  Score=160.72  Aligned_cols=183  Identities=20%  Similarity=0.194  Sum_probs=138.3

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccch-HHHHHHHHHH--------HHhHHHHHHHHHcCcHHHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA-AARIAHSALE--------LEERKAINDLLRLNLDFLKN   79 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~-~~~~l~~A~~--------~~~~~~~~~L~~~g~~~l~~   79 (271)
                      .|..+.++++.+...|+..+.+++...-......-...... ...--.....        ..+.+....+     ..|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l-----~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKL-----HSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHH-----HHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhh-----hhhhh
Confidence            57788999999999999887776654322111100000011 0000000000        0011111111     12889


Q ss_pred             HHhcChHH-HHHHHhcCCCCc------cCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhC
Q psy8012          80 VRSNKYDE-VKKNIEDGACIN------VSSERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMACRFH  149 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~------~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~  149 (271)
                      |+..++.. ++.++..|.+++      ..+..|.||||+|+..   ++.+++++|++.|++++..|..|+||||+|+.. 
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~-  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT-
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-
Confidence            99999999 999999998844      4478899999999999   899999999999999999999999999999998 


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         150 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       150 ~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++.
T Consensus       216 g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          216 DNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999998 999999999 999999999999999863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=4.7e-23  Score=160.96  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCC---------------CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCc
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQ---------------IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL   74 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---------------~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~   74 (271)
                      ++.+.++.+.+++.|+...+..+.+.+.-               ++..+..|.||    ||+|+..|+.+++++|++.|+
T Consensus        22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~----L~~A~~~g~~~~v~~Ll~~g~   97 (222)
T 3ehr_A           22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNP----LHEAAKRGNLSWLRECLDNRV   97 (222)
T ss_dssp             CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCH----HHHHHHHTCHHHHHHHHHTTC
T ss_pred             CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccc----cccccccCcHHHHHHHHhCCC
Confidence            55666777777777665433322221110               01122334444    555555555555555554443


Q ss_pred             HH----------HHHHHhcChHH-HHHHHhc-CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHH
Q psy8012          75 DF----------LKNVRSNKYDE-VKKNIED-GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL  142 (271)
Q Consensus        75 ~~----------l~~a~~~~~~~-~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l  142 (271)
                      ++          ||+|+..++.+ +++|++. |++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.|||
T Consensus        98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  177 (222)
T 3ehr_A           98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF  177 (222)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHH
Confidence            32          55555555555 5555544 455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhCCCHHHHHHHHhCCCCccccC
Q psy8012         143 HMACRFHDDDSIVRKLLRHGAYYNVVD  169 (271)
Q Consensus       143 ~~a~~~~~~~~~~~~Ll~~g~~~~~~~  169 (271)
                      ++|+.. +..++++.|++.|+..+..+
T Consensus       178 ~~A~~~-~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          178 DMATNA-ACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHCCSH-HHHHHHC-------------
T ss_pred             HHhcch-hHHHHHHHHhccchhhhccc
Confidence            555544 44555555555444444333

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.7e-22  Score=134.78  Aligned_cols=92  Identities=41%  Similarity=0.462  Sum_probs=87.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hc
Q psy8012         104 RCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GK  182 (271)
Q Consensus       104 ~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~  182 (271)
                      +|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence            478999999999999999999999999999999999999999998 999999999999999999998 999999999 99


Q ss_pred             CCchHHHHHHhchhh
Q psy8012         183 GAREVNTVLLYFIHE  197 (271)
Q Consensus       183 ~~~~~~~~L~~~g~~  197 (271)
                      ++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=2.3e-22  Score=167.78  Aligned_cols=141  Identities=18%  Similarity=0.097  Sum_probs=97.8

Q ss_pred             CCCChHHHHHHh-CCHHHHHHHHHCCCCCCchh--hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012          12 EDHKPIAIAIQI-GDPQIVKELQNHGAQIDKEI--YSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV   88 (271)
Q Consensus        12 ~g~t~L~~A~~~-g~~~~~~~Ll~~g~~~~~~~--~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~   88 (271)
                      .+.|+||.|+.. |+.++++.|+++|++++..+  ..|.||    ||+|+..++.++                      +
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~Tp----Lh~Aa~~g~~~i----------------------v  251 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP----LIQATAANSLLA----------------------C  251 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCH----HHHHHHTTCHHH----------------------H
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCH----HHHHHHCCCHHH----------------------H
Confidence            345688888888 88888888888888888777  778888    555444444433                      4


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCC---Cc
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA---YY  165 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~---~~  165 (271)
                      ++|+++|++++..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+..+.   +.
T Consensus       252 ~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~-g~~~iv~lLl~~~~~~~~~  330 (368)
T 3jue_A          252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMET-ANADIVTLLRLAKMREAEA  330 (368)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHC-----
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCcccc
Confidence            555556778888888888888888888888888888888888888888888888888887 88888888886653   33


Q ss_pred             cccCCCCCCCHHHHH
Q psy8012         166 NVVDGKTGKTPLLHA  180 (271)
Q Consensus       166 ~~~~~~~g~tpL~~A  180 (271)
                      ...+. .+.|+++++
T Consensus       331 ~~~~~-~~~t~l~i~  344 (368)
T 3jue_A          331 AQGQA-GDETYLDIF  344 (368)
T ss_dssp             ---------------
T ss_pred             cccCC-CCCCHHHHH
Confidence            33444 577777766

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=2.9e-21  Score=161.17  Aligned_cols=121  Identities=23%  Similarity=0.278  Sum_probs=114.8

Q ss_pred             HHHHHHHhc-ChHH-HHHHHhcCCCCccCC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC
Q psy8012          75 DFLKNVRSN-KYDE-VKKNIEDGACINVSS--ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHD  150 (271)
Q Consensus        75 ~~l~~a~~~-~~~~-~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~  150 (271)
                      .+|+.|+.. ++.+ ++.|++.|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+.. +
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~-g  279 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL-G  279 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-T
T ss_pred             cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-C
Confidence            349999999 9999 999999999999998  8899999999999999999999999999999999999999999999 9


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       151 ~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      +.+++++|+++|++++..+. .|.||||+| ..++.+++++|+..+..
T Consensus       280 ~~~~v~~LL~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          280 HTGLACLFLKRGADLGARDS-EGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             cHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999998 999999999 99999999999988754

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=3.8e-21  Score=129.13  Aligned_cols=93  Identities=29%  Similarity=0.362  Sum_probs=64.1

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKN   91 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~l   91 (271)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||    ||+|+..++.++                      +++|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~----L~~A~~~~~~~~----------------------v~~L   54 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP----LHLAARNGHLEV----------------------VKLL   54 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHH----------------------HHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH----HHHHHHcCCHHH----------------------HHHH
Confidence            47888888888888888888888888888877777777    444444333333                      4444


Q ss_pred             HhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC
Q psy8012          92 IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD  130 (271)
Q Consensus        92 l~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  130 (271)
                      ++.|++++.++..|.||||+|+..|+.+++++|++.|++
T Consensus        55 l~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            445666677777777777777777777777777776653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=1e-21  Score=137.23  Aligned_cols=101  Identities=34%  Similarity=0.335  Sum_probs=95.8

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHH
Q psy8012         100 VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH  179 (271)
Q Consensus       100 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~  179 (271)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~d~-~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNARSK-DGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCCCT-TCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCcccCC-CCCCHHHH
Confidence            4678999999999999999999999999999999999999999999998 999999999999999999998 89999999


Q ss_pred             H-hcCCchHHHHHHhchhhHHHHh
Q psy8012         180 A-GKGAREVNTVLLYFIHEIFKLM  202 (271)
Q Consensus       180 A-~~~~~~~~~~L~~~g~~~~~~~  202 (271)
                      | ..++.+++++|+++|++++...
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCC
Confidence            9 9999999999999999987543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=8.9e-21  Score=152.93  Aligned_cols=125  Identities=17%  Similarity=0.190  Sum_probs=109.6

Q ss_pred             CChHHHHHHhCCHHHHHHHHHCCCCCC------chhhcccchHHHHHHHHHHH---HhHHHHHHHHHcCcHHHHHHHhcC
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNHGAQID------KEIYSKNKAAARIAHSALEL---EERKAINDLLRLNLDFLKNVRSNK   84 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~------~~~~~g~t~~~~~l~~A~~~---~~~~~~~~L~~~g~~~l~~a~~~~   84 (271)
                      .++|+.|+..|+.+.++.+++.|++++      ..+..|.||    ||+|+..   ++.++                   
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~----Lh~A~~~~~~~~~~~-------------------  187 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETA----LHLAVRSVDRTSLHI-------------------  187 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBH----HHHHHHHCCTTTHHH-------------------
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCc----chHHHHhcccchHHH-------------------
Confidence            358999999999999999999999854      447789999    7777666   44544                   


Q ss_pred             hHHHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012          85 YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY  164 (271)
Q Consensus        85 ~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~  164 (271)
                         +++|++.|++++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|+++|++
T Consensus       188 ---v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          188 ---VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALSG  263 (278)
T ss_dssp             ---HHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHTT
T ss_pred             ---HHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence               5555666788999999999999999999999999999999999999999999999999998 999999999999875


Q ss_pred             c
Q psy8012         165 Y  165 (271)
Q Consensus       165 ~  165 (271)
                      .
T Consensus       264 ~  264 (278)
T 1dcq_A          264 R  264 (278)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.5e-21  Score=136.39  Aligned_cols=109  Identities=28%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      .+.|.+|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..++.++                     
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~----L~~A~~~~~~~~---------------------   57 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP----LHLAAKNGHAEI---------------------   57 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCT----THHHHTTTCHHH---------------------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH----HHHHHHcCcHHH---------------------
Confidence            4678889999999999999999999999988888777777777    444333333322                     


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcH
Q psy8012          87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTA  141 (271)
Q Consensus        87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~  141 (271)
                       +++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..+.+|
T Consensus        58 -~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           58 -VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             -HHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             -HHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence             344444555666666666666666666666666666666666666666655554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=9.3e-19  Score=121.18  Aligned_cols=91  Identities=33%  Similarity=0.441  Sum_probs=84.2

Q ss_pred             ccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHH
Q psy8012          99 NVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL  178 (271)
Q Consensus        99 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~  178 (271)
                      ...+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQDK-FGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccc-CCCcHHH
Confidence            44577899999999999999999999999999999999999999999998 999999999999999999998 9999999


Q ss_pred             HH-hcCCchHHHHH
Q psy8012         179 HA-GKGAREVNTVL  191 (271)
Q Consensus       179 ~A-~~~~~~~~~~L  191 (271)
                      +| ..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99 99999999887

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=8.9e-18  Score=116.20  Aligned_cols=92  Identities=20%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      ...+.+|.||||+|+..|+.+++++|+++|++++.++..|.||    ||+|+..++.++                     
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tp----Lh~A~~~~~~~~---------------------   72 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP----LHLAARNGHLEV---------------------   72 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHTTCHHH---------------------
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH----HHHHHHcCCHHH---------------------
Confidence            3456778888888888888888888888888877777777777    444443333333                     


Q ss_pred             HHHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHH
Q psy8012          87 EVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL  124 (271)
Q Consensus        87 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  124 (271)
                       +++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        73 -v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           73 -VKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             -HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -HHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence             3444445566666666677777777777776666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 1e-16
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 167
            L  A++ G+  IV  LL  GA  N  +    T LHMA R    + + + LL++ A  N 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-VAKYLLQNKAKVNA 61

Query: 168 VDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANN 205
              K  +TPL  A   G   +  +LL             
Sbjct: 62  KA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 5e-14
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                   VK  ++ GA  NVS+ +  + L  AA  G+ E+   LL N A VN K+    
Sbjct: 8   SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 67

Query: 140 TALHMACRFHDDDSIVRKLLRHGA 163
           T LH A R    + +V+ LL + A
Sbjct: 68  TPLHCAARIGHTN-MVKLLLENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 2e-12
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 28/161 (17%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
                P+ +  Q G   +   L  HG  +D                              
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP--------------------- 300

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
                            VK  ++  A +N  ++   S L  AA +G+ +IV LLL NGA 
Sbjct: 301 -----LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 355

Query: 131 VNFKSATGFTALHMACRFHDDD--SIVRKLLRHGAYYNVVD 169
            N  S+ G T L +A R        +++ +    ++  V D
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-11
 Identities = 51/277 (18%), Positives = 93/277 (33%), Gaps = 40/277 (14%)

Query: 14  HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLN 73
             P+ +A + G  ++ + L    A  +    +  K      H A+       +  LL   
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHPN----AAGKNGLTPLHVAVHHNNLDIVKLLLPRG 188

Query: 74  LD-----------FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVD 122
                             + N+ +  +  ++ G   N  S +  + L  AA +G+ E+V 
Sbjct: 189 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

Query: 123 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
           LLL   A+ N  + +G T LH+  +      +   L++HG   +    + G TPL  A  
Sbjct: 249 LLLSKQANGNLGNKSGLTPLHLVAQEGHVP-VADVLIKHGVMVDATT-RMGYTPLHVASH 306

Query: 183 GAREVNTVLLYFIHEIFKLMANNDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFS 236
                    L               + L         D +  L+  G         N   
Sbjct: 307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG------ASPN--- 357

Query: 237 LLKVTKNDAGETILDIAKKRGFP----LLEELEKKLA 269
                 +  G T L IAK+ G+     +L+ +  + +
Sbjct: 358 ----EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 390

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-11
 Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 9/206 (4%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
           +D  P+  A +IG   +VK L  + A  +    + +      A           +     
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 72  LNL-------DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLL 124
                           +  K    +  +E  A  N + +   + L  A      +IV LL
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 125 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGA 184
           L  G   +  +  G+T LH+A + +  + + R LL++G   N      G TPL  A +  
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVE-VARSLLQYGGSANAES-VQGVTPLHLAAQEG 242

Query: 185 REVNTVLLYFIHEIFKLMANNDTTIL 210
                 LL        L   +  T L
Sbjct: 243 HAEMVALLLSKQANGNLGNKSGLTPL 268

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 61/198 (30%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
           P+ +A  +G   IVK L   GA  +      N       H A                  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNV----SNVKVETPLHMA------------------ 40

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-------- 127
                R+   +  K  +++ A +N  ++   + L  AA  G+  +V LLL+N        
Sbjct: 41  ----ARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 128 -------------------------GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
                                     A     +  GFT LH+A ++     +   LL   
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR-VAELLLERD 155

Query: 163 AYYNVVDGKTGKTPLLHA 180
           A+ N    K G TPL  A
Sbjct: 156 AHPNAAG-KNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           T LH+A        IV+ LL+ GA  NV +    +TPL  A   G  EV   LL
Sbjct: 2   TPLHVASF-MGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLL 53

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 8e-14
 Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 25/156 (16%)

Query: 16  PIAIAIQIGDPQIVKEL-QNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL 74
            +  A + G  +++K L    GA ++        A      S+ + +     + L     
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL----- 205

Query: 75  DFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD-NGADVNF 133
                            ++ GA +NV  ER  + LI A  K +  +V  LL+    ++N 
Sbjct: 206 -----------------LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 134 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 169
             + G TAL +A        I   L + GA  +  D
Sbjct: 249 TDSDGKTALLLAVELKLKK-IAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 7/119 (5%)

Query: 80  VRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKG----YEEIVDLLLDNGADVNFK 134
                 + +K  + E GA +N       +ALI+A         E I  LLLD+GADVN +
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215

Query: 135 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
              G T L +A        + R L +     N  D   GKT LL A     +++  +L 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLC 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 107 SALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDD---DSIVRKLLRHG 162
           +AL+ AA KG+ E++ +LLD  GADVN     G  AL  A    DD   ++I   LL HG
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG 209

Query: 163 AYYNVVDGKTGKTPLLHAG-KGAREVNTVLL 192
           A  NV   + GKTPL+ A  K    +   LL
Sbjct: 210 ADVNVRG-ERGKTPLILAVEKKHLGLVQRLL 239

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 4/154 (2%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
             LI A      ++V  LL+ GA+VNF+    G+T LH A +   +D IV  LLRHGA  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED-IVELLLRHGADP 65

Query: 166 NVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILD--RLDEMKSLILEG 223
            +         LL A  G+ ++  + L    ++ +      T  ++     ++K+L    
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 224 TKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 257
            +             +      G T L  A ++G
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 20/177 (11%)

Query: 12  EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLR 71
           ED+  +  A+Q  D  +V++L   GA ++ +           A      +  + +     
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 72  LNLDFLKN--------VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
             +   KN          +     +K  +  GA +N       +A + AA  G  + +  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 124 LLDNGADVNFKSAT----------GFTALHMACRFHDDDSIVRKLLRH-GAYYNVVD 169
           L   GA+VN +  T          G TAL  A        +++ LL   GA  N  D
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-KGHVEVLKILLDEMGADVNACD 179

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 8e-13
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 33/133 (24%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALH-------- 143
           +  GA +N  ++   + L YAA K   EI  +LL+ GA+ + K     TA+H        
Sbjct: 90  LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 149

Query: 144 ------------------------MACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 179
                                         +     + L+  GA   + + K  KTPL  
Sbjct: 150 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN-KEEKTPLQV 208

Query: 180 AGKGAREVNTVLL 192
           A  G   +   ++
Sbjct: 209 AKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-11
 Identities = 48/232 (20%), Positives = 77/232 (33%), Gaps = 55/232 (23%)

Query: 73  NLDFLKNVRSNKYDEVKKNI-EDGACINVSSERCGSALIYAAWKGYEE------------ 119
           NL       S K +E+K++I  D +    + +   +AL +A   G+ E            
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 120 ---------------------IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 158
                                IV  LL  GA VN  +  G T LH A   +  + I   L
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVML 122

Query: 159 LRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTIL------DR 212
           L  GA  +  D     T +  A          +L +      +      T L      +R
Sbjct: 123 LEGGANPDAKD-HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 213 LDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEEL 264
           ++E K L+ +G                  +N   +T L +AK     +L+ +
Sbjct: 182 VEEAKLLVSQGA------SIY-------IENKEEKTPLQVAKGGLGLILKRM 220

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 95  GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 154
           G+  +   E   + ++ AA +G  E+V  L+  GA V    AT  TA  +A   +  + I
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN-I 269

Query: 155 VRKLLR 160
           V    R
Sbjct: 270 VDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 127 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            G++ + +   G T + +A +    + +V  L++ GA    VD  T  T    A
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIE-VVMYLIQQGASVEAVD-ATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDN--------GAD 130
             +     + + I     +N+   R   + L + A     E  + L+ +        GAD
Sbjct: 8   TEAAGSYAITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 131 VNFKSATGFTALHMACRFHDDD 152
           VN       T L +A       
Sbjct: 67  VNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
            +  + + V   I+ GA +        +A   A    +  IVD+  
Sbjct: 229 AQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 192
           + + +        +I   + R     N++D +  +T L       + E +  L+
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESV--NIIDPRHNRTVLHWIASNSSAEKSEDLI 53

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 1e-11
 Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 23/182 (12%)

Query: 4   PYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIA------HSA 57
                     H  + +A ++        L        ++        ++          A
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 58  LELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCG----------- 106
               +    N+    + D+   + +  YD            +    R             
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 107 -----SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 161
                + L  A       +++LLL  GAD   +   G T L  A    +   + R L  H
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI-LARLLRAH 247

Query: 162 GA 163
           GA
Sbjct: 248 GA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGAD---VNFKSATGFTALHMACRFHD 150
           +AL  A    +E  +D LL   A    ++ ++  G TALH+A    +
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE 57

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT--GKTPLLHA 180
            + +  G TALH+A   H  +  +  LL   A +  +D +   G+T L  A
Sbjct: 3   GYVTEDGDTALHLAVI-HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 8e-06
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 79  NVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
            V +     ++  ++ GA          + L  A  +    +  LL  +GA   
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 35/263 (13%), Positives = 68/263 (25%), Gaps = 45/263 (17%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD 75
            + +A+       +  L    A  +  +  +N       H A                  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQNDLGQTALHLA------------------ 52

Query: 76  FLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS 135
                   +   V+K    GA + V+     +AL  A          +LL         +
Sbjct: 53  ----AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 136 A-------------TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 182
           +             T      +  + + ++    +           +        +    
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 183 GAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSL-ILEGTKEFGPGDYNNFSLLKVT 241
              E+  +L     ++ K       T L    E ++  +LE   + G  D          
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPT-------A 220

Query: 242 KNDAGETILDIAKKRGFPLLEEL 264
           +   G T L  A  R  P+L  L
Sbjct: 221 RMYGGRTPLGSALLRPNPILARL 243

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 93  EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 152
                    ++  G+AL  AA KGY E++ LL+    DVN K   G+T LH A  +  ++
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246

Query: 153 SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
              R L+ +      V+ K G+T    A
Sbjct: 247 -ACRILVENLCDMEAVN-KVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.3 bits (142), Expect = 5e-11
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFT 140
                + +K  I+    +N+      + L  AA  G EE   +L++N  D+   +  G T
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267

Query: 141 ALHMACRFHDDDSIVRKLLRHGAYYNVV 168
           A  +A        I+  L       N++
Sbjct: 268 AFDVADE-----DILGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMAC 146
           G+  + A   G  E V  LL+ GAD+N+ +  G TALH AC
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC 81

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 48/268 (17%), Positives = 84/268 (31%), Gaps = 26/268 (9%)

Query: 9   VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKA---AARIAHSALELEERKA 65
           V ++D      A   GD + V  L   GA I+        A   A    +  +     + 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 66  INDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLL 125
             ++ + + +    + +          E             S          EE ++ LL
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 126 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGA 184
            N  +                   D     R+ L  G   +V   K+G T L + A KG 
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRD----ARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

Query: 185 REVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNFSLLK 239
            EV  +L+   +++     +  T +       + +  + L+          D        
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL------CDME------ 259

Query: 240 VTKNDAGETILDIAKKRGFPLLEELEKK 267
              N  G+T  D+A +     LEEL+KK
Sbjct: 260 -AVNKVGQTAFDVADEDILGYLEELQKK 286

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.9 bits (144), Expect = 4e-11
 Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 5/124 (4%)

Query: 73  NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVD---LLLDNGA 129
                + +        +   +  +  +    +       AA  G    +D   LLL +  
Sbjct: 58  MEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDE 117

Query: 130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG-KTGKTPLLHAGKGAREVN 188
            V    A  + A  +A        ++ +L        +             A +      
Sbjct: 118 IVKVIQAENYQAFRLAAENGHLH-VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

Query: 189 TVLL 192
              L
Sbjct: 177 LNRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 18/157 (11%), Positives = 38/157 (24%), Gaps = 16/157 (10%)

Query: 11  YEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLL 70
              +     A+  G   ++  L +    +                  +     + +N L 
Sbjct: 195 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAY----AEIHEFEYGEKYVNPFIARHVNRLK 250

Query: 71  RLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
            ++  F  +     +D V K+        +        LI    +   + +  LL     
Sbjct: 251 EMHDAFKLSNPDGVFDLVTKSECLQGFYMLR------NLIRRNDEVLLDDIRFLLSIPGI 304

Query: 131 VNFKSA-----TGFTALHMACRFHDDDSIVRKLLRHG 162
                           L +A R   +      LL   
Sbjct: 305 KALAPTATIPGDANELLRLALR-LGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 12/85 (14%), Positives = 19/85 (22%), Gaps = 14/85 (16%)

Query: 109 LIYAAWKGYEEIVDLLLDNGADVN-----------FKSATGFTALHMACRFHDDDS--IV 155
           +     K  E++  LL    A  N            K         +A       +   +
Sbjct: 50  IFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTL 109

Query: 156 RKLLRHGAYYNVVDGKTGKTPLLHA 180
             LL       V+           A
Sbjct: 110 CLLLTSDEIVKVIQ-AENYQAFRLA 133

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 3e-10
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 29/192 (15%)

Query: 16  PIAIAIQIGDPQIVKELQNHGAQIDK--EIYSKNKAAARIAHSALELEERKAINDLLR-- 71
           P+     I + ++VK L  HG+       +       A  + +  +    +A+ D L   
Sbjct: 110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 169

Query: 72  -----------LNLDFLKNVRSNKYDEVKKNIE---------DGACINVSSERCGSALIY 111
                      L+   + +  +      K  ++             I   +    S    
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 112 AAWKGYEEIVDLLLDN---GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
              +  + I++ L         +N + + G T L++A R   + SIV  LL +GA   + 
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFIA 288

Query: 169 DGKTGKTPLLHA 180
           + K+G  P+   
Sbjct: 289 N-KSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 33/251 (13%), Positives = 81/251 (32%), Gaps = 20/251 (7%)

Query: 27  QIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD 86
           +I+K L +     +++         R+    ++       ND    N +   + +  ++ 
Sbjct: 20  KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 79

Query: 87  EVKKNIEDGAC--------INVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSAT 137
                +++           +N+  +  G + L +       E+V  L+ +G++  +    
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 139

Query: 138 GFTALHMACRFHD--DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE--VNTVLLY 193
           G + L  A +  +  D      LL +     +++    +T L H    +     +    Y
Sbjct: 140 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 199

Query: 194 FIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV-------TKNDAG 246
           ++  +   +       +      K                    LK         ++  G
Sbjct: 200 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 259

Query: 247 ETILDIAKKRG 257
           +T L+IA + G
Sbjct: 260 DTCLNIAARLG 270

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-10
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 80  VRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
           V +N    V+  ++ GA +N       SAL  A+ +G   +V  L+ +GAD + K+    
Sbjct: 152 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 211

Query: 140 TALHMACRFHDDDSIVR 156
           T L +A      D I+R
Sbjct: 212 TPLMVARSRRVID-ILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 107 SALIYAAWKGYEEIVDLLLD----NGADVNFKSATGFTALHMACRFH 149
           + L  A  +G    V  L++     G +++  +    T LH+A    
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT 51

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 109 LIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 168
           LI+A       +V LLL +GA+VN +  +G +ALH A        +VR L+R GA  ++ 
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-LVRTLVRSGADSSLK 206

Query: 169 DGKTGKTPLLHA 180
           +     TPL+ A
Sbjct: 207 N-CHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 138 GFTALHMACRFHDDD---SIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G T LH+A    +      +V    + G   ++ +    +TPL  A
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLA 47

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 4e-09
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 9/152 (5%)

Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
           G+ L  AA +G  E +  LL N  +VN ++  G TAL +    + + +    L       
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 166 NVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK 225
               G         AG             +  + +  A+ +    +    +     EG  
Sbjct: 62  KDRTGFAVIHDAARAGFL---------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 112

Query: 226 EFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 257
                   + +     +N  G+T  D+A+  G
Sbjct: 113 RVVEFLVKHTASNVGHRNHKGDTACDLARLYG 144

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.002
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDK------EIYSKNKAAARIAHSALELEERKAINDLLRL 72
            A   GD + +  L  +   ++             K         L L            
Sbjct: 7   SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTG 66

Query: 73  NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYE-EIVDLLLDNGADV 131
                   R+   D ++  +E  A +N+        L  AA +G+   +  L+    ++V
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 132 NFKSATGFTALHMACRFHDDDSIVRKLLRHG 162
             ++  G TA  +A  +  ++ +V  +  +G
Sbjct: 127 GHRNHKGDTACDLARLYGRNE-VVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (116), Expect = 4e-08
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 15  KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNL 74
           K +  A + G    V+ L  +GA    +    +       +      E      + R   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 75  DFLKNVRSNKYDE------VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG 128
             +     +          V+  ++ GA +N       +AL +A    ++E+V+LL+  G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 129 ADVNFKSATGFTALHMACRFHDDDSIVRKLLR 160
           ADV+ +S    TA  ++    ++D  + ++L+
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNED--LAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 10/152 (6%)

Query: 106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 165
           G  L+ AA  G ++ V +L+ NGA        G + LH+A ++    +            
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVL--LRAGVS 59

Query: 166 NVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTK 225
                K  +TPL  A          +L               T L    E     +    
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 226 EFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 257
                D +       T++   +T  DI+   G
Sbjct: 120 IKYGADVH-------TQSKFCKTAFDISIDNG 144

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 81  RSNKYDEVKKNIEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGF 139
                  V+  +  GA +N      G +AL  A      ++V LLL  GADVN  +  G+
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 179

Query: 140 TALHMACRFHDDDSIVRKLLRHGA 163
           +   +         I ++L +   
Sbjct: 180 SPYQLTWGRPSTR-IQQQLGQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 4e-07
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 107 SALIYAAWKGY----EEIVDLLLDNGADVNFKSATGFTALHMACRFH 149
           S L  A          E++  +  + A +NF++    T LH+A   +
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN 50

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 4e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 138 GFTALHMACRFHDDDS---IVRKLLRHGAYYNVVDGKTGKTPLLHA 180
           G + LH+A    +      ++R++    A+ N  +    +TPL  A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 8/46 (17%), Positives = 15/46 (32%)

Query: 85  YDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD 130
            D V   ++ GA +N  + +  S       +    I   L     +
Sbjct: 158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 83  NKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTAL 142
           N  + V   +   A  +   ++  + L  AA +G  E    LLDN A+            
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPR 193

Query: 143 HMACRFHDDDSIVRKL 158
            +A      D IVR L
Sbjct: 194 DVASERLHHD-IVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 9e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 119 EIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLRHGAYYN 166
           +++  LL  GA++N     TG T+LH+A RF   D   ++LL  GA  N
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARAD-AAKRLLDAGADAN 50

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 108 ALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRF 148
            L  A  +     V  LL    + +  K   G   LH +  F
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF 44

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 4e-07
 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 97  CINVSSERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIV 155
            +N   ++  + L +A  +G+ +   LL++  GA+ +     G  A  +A     ++ + 
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL----NEQVK 219

Query: 156 RKLLRHGA 163
           +  L +  
Sbjct: 220 KFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 92  IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGAD-VNFKSATGFTALHMACRFHD 150
           IE+GA + +  +     L  AA  G  ++++LL   G   VN++   G+T L  A     
Sbjct: 125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184

Query: 151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
            D+ V  + ++GA Y++VD   G      A
Sbjct: 185 GDAAVLLVEKYGAEYDLVD-NKGAKAEDVA 213

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 140 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 180
             LH AC  ++   +   L    +     D + G+ PL  +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWS 41

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-05
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 35/121 (28%)

Query: 107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDS------------- 153
           + L+ ++ +G  ++V  ++    D +  +  G TALH A      +              
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 154 -------------------IVRKLLRHGAYYNVVDGKTGKTPL-LH--AGKGAREVNTVL 191
                              + + L+  GA    +     +T         +G  + +  L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 192 L 192
            
Sbjct: 123 Y 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 11/122 (9%), Positives = 28/122 (22%), Gaps = 10/122 (8%)

Query: 20  AIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKN 79
           +   G+  +V+ +                A      +      +  +   + +N      
Sbjct: 8   SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 67

Query: 80  VRSNKYDEVKKN-------IEDGACINVSSERCG---SALIYAAWKGYEEIVDLLLDNGA 129
                      N       +E GA +   +       +       +GY +    L     
Sbjct: 68  WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127

Query: 130 DV 131
            +
Sbjct: 128 KM 129

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 80  VRSNKYDEVKKNIEDGACINVS------SERCGSALIYAAW---KGYEEIVDLLLDNGAD 130
           V++     + +   DG  +          E   +AL  A     +    IVD L+ N  +
Sbjct: 14  VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN 73

Query: 131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNT 189
           ++ ++  G TA    C   D+   ++ LLR  A   + + ++G+TPL  A          
Sbjct: 74  LDKQTGKGSTA-LHYCCLTDNAECLKLLLRGKASIEIAN-ESGETPLDIAKRLKHEHCEE 131

Query: 190 VLL 192
           +L 
Sbjct: 132 LLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 16/127 (12%)

Query: 20  AIQIGDPQIVKELQNHGAQIDKEIYSKNKAA----ARIAHSALELEERKAINDLLR---- 71
           A++  D   + +    G  + ++I   N       A              I D L     
Sbjct: 13  AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 72

Query: 72  --------LNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDL 123
                    +        ++  + +K  +   A I +++E   + L  A    +E   +L
Sbjct: 73  NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 132

Query: 124 LLDNGAD 130
           L    + 
Sbjct: 133 LTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 108 ALIYAAWKGYEEIVDLLLDNGADVNFK------SATGFTALHMACRFHDDDS--IVRKLL 159
           +L  A        +     +G D+  K           TALH+A R  D  S  IV  L+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 160 RHGA 163
           ++  
Sbjct: 69  QNSG 72

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 104 RCGSALIYAAWKGYEEIVDLLLD-NGADVNFKSATGFTALHMACRFH 149
           R G  L  AA +G  + V  LL       +  +  G TAL +     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS 47

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 4e-04
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 9/149 (6%)

Query: 20  AIQIGDPQIVKEL-QNHGAQID------KEIYSKNKAAARIAHSALELEERKAINDLLRL 72
           A   GD Q V+ L        D      K         +      L  +           
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68

Query: 73  NLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN 132
                   R+   D +K  +E GA +NV        +  A  +G+  +V  L    +D++
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH 127

Query: 133 FKSATGFTALHMACRFHDDDSIVRKLLRH 161
            + A G T L +A +    D +V  L  H
Sbjct: 128 RRDARGLTPLELALQRGAQD-LVDILQGH 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 8e-04
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 103 ERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFH 149
           E     L  AA +G  E V  LL+ GA+ N  ++ G   + +     
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS 47

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (77), Expect = 0.003
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 7/115 (6%)

Query: 19  IAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLK 78
            A   G  + V+ L   GA  +       +    +   +  + E   ++       D   
Sbjct: 9   TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADPAT 68

Query: 79  NVRSNKYDEVKKN-------IEDGACINVSSERCGSALIYAAWKGYEEIVDLLLD 126
             R       +            GA ++V        +  A   G+ ++   L  
Sbjct: 69  LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-38  Score=264.09  Aligned_cols=247  Identities=20%  Similarity=0.248  Sum_probs=197.7

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----   76 (271)
                      |.+++ ..|..|.||||+||..|+.+++++|+++|++++.++..|.||    ||+|+..|+.+++++|+..+.++     
T Consensus        23 g~~in-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~----L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   97 (408)
T d1n11a_          23 GASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP----LHCAARIGHTNMVKLLLENNANPNLATT   97 (408)
T ss_dssp             TCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH----HHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHhhhccccccc
Confidence            54444 346789999999999999999999999999999999999999    99999999999999988764433     


Q ss_pred             --------------------------------------HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCC
Q psy8012          77 --------------------------------------LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGY  117 (271)
Q Consensus        77 --------------------------------------l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~  117 (271)
                                                            ++.++..++.+ ++.|++.+++++..+..|.+||++|+..|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~  177 (408)
T d1n11a_          98 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN  177 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTC
T ss_pred             cccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCC
Confidence                                                  78888888888 999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCccccCC-------------------------------------------------------------
Q psy8012         118 EEIVDLLLDNGADVNFKSA-------------------------------------------------------------  136 (271)
Q Consensus       118 ~~~~~~Ll~~~~~~~~~~~-------------------------------------------------------------  136 (271)
                      .+++++|+.+|++++..+.                                                             
T Consensus       178 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~  257 (408)
T d1n11a_         178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG  257 (408)
T ss_dssp             HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc
Confidence            9999999988877654332                                                             


Q ss_pred             -----CCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012         137 -----TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL  210 (271)
Q Consensus       137 -----~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~  210 (271)
                           .|.||++.|+.. ++.+++++|++.|++++..+. .+.||||.+ ..+..++++++++.|++++..+..+.++.+
T Consensus       258 ~~~~~~g~~~l~~a~~~-~~~~i~~~Ll~~g~~~~~~~~-~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh  335 (408)
T d1n11a_         258 NLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH  335 (408)
T ss_dssp             TCCCTTCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCS-SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCCCChhhhhhhc-CcHHHHHHHHHCCCccccccc-cccccchhhcccCcceeeeeeccccccccccCCCCCCHHH
Confidence                 333445555554 666777777777777777776 677777777 777777777777777777766554443322


Q ss_pred             -----cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 -----DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                           ...+++++|+.+|++             ++.+|..|+||||+|+++|+.+++++|+.+
T Consensus       336 ~A~~~g~~~iv~~Ll~~GAd-------------~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         336 QAAQQGHTDIVTLLLKNGAS-------------PNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-------------SCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC-------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence                 358899999999999             778999999999999999999999999754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-38  Score=245.18  Aligned_cols=206  Identities=26%  Similarity=0.245  Sum_probs=191.6

Q ss_pred             CCChHHHHHHhCCHHHHHHHH-HCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQ-NHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVR   81 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~   81 (271)
                      +.++||.+|..|+.+.++.++ +.+..++.+|..|+||    ||+|+..|+.+++++++..+...          ++.++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~Tp----Lh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTA----LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCH----HHHHHHhhhhcccccccccccccccccccccccccccc
Confidence            468899999999999997776 4567899999999999    99999999999999999986544          89999


Q ss_pred             hcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          82 SNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        82 ~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                      ..++.+ +++|++.+++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. +..+++++|.+
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~-~~~~~~~~L~~  157 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKMIHILLY  157 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred             cccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhc-CCcchhhhhcc
Confidence            999999 9999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             CCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccccc
Q psy8012         161 HGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLK  239 (271)
Q Consensus       161 ~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (271)
                      .|.+++.++. .|+||||+| ..++.+++++|+++|+++                                         
T Consensus       158 ~~~~i~~~d~-~g~TpL~~Aa~~g~~~~v~~LL~~Gad~-----------------------------------------  195 (223)
T d1uoha_         158 YKASTNIQDT-EGNTPLHLACDEERVEEAKLLVSQGASI-----------------------------------------  195 (223)
T ss_dssp             TTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCS-----------------------------------------
T ss_pred             ccceeeeccC-CCCceeccccccCcHHHHHHHHHCCCCC-----------------------------------------
Confidence            9999999998 999999999 999999999999999985                                         


Q ss_pred             ccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012         240 VTKNDAGETILDIAKKRGFPLLEELEK  266 (271)
Q Consensus       240 ~~~d~~g~tpl~~A~~~~~~~~~~ll~  266 (271)
                      +.+|..|+||||+| +.|+.+++++|-
T Consensus       196 ~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         196 YIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             CCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            47999999999998 468888888774

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-37  Score=246.80  Aligned_cols=215  Identities=21%  Similarity=0.147  Sum_probs=151.8

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCC---CCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQ---IDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~---~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      +|++.+|.||||+||+.|+.+++++|+++|++   ++.++..|.||    ||+|+..|+.+++++|++.|+++       
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~Tp----L~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g   78 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA----LHLAAILGEASTVEKLYAAGAGVLVAERGG   78 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSSCCCTTS
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCc----cchHHhhccccccccccccccccccccccc
Confidence            68899999999999999999999999999987   55677899999    88888888888888887765443       


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCCCccCCC----------CCCcHHHHHHHhCCH---H-HHHHHHHCCCCccccCCCC
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGACINVSSE----------RCGSALIYAAWKGYE---E-IVDLLLDNGADVNFKSATG  138 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~~~~~~~----------~g~t~l~~a~~~~~~---~-~~~~Ll~~~~~~~~~~~~~  138 (271)
                         |++|+..++.+ +++|++.+........          ...+....+......   . ........+.+++..+..|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence               56666666555 5555544332111000          000000000000000   0 0001111133345567788


Q ss_pred             CcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHH
Q psy8012         139 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMK  217 (271)
Q Consensus       139 ~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~  217 (271)
                      .||||+|+.. ++.+++++|++.+++++..+...|.||||+| ..++.+++++|+++|++++                  
T Consensus       159 ~TpLh~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin------------------  219 (255)
T d1oy3d_         159 HTPLHVAVIH-KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT------------------  219 (255)
T ss_dssp             CCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------
T ss_pred             cccccccccc-cccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC------------------
Confidence            8999999988 8999999999988888866544789999998 8888999999988888754                  


Q ss_pred             HHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         218 SLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       218 ~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                                             .+|..|+||||+|+++|+.+++++|-+
T Consensus       220 -----------------------~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         220 -----------------------ARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             -----------------------CCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             -----------------------CCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                                   789999999999999999999999876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-35  Score=246.37  Aligned_cols=249  Identities=23%  Similarity=0.171  Sum_probs=195.8

Q ss_pred             CChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhc
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSN   83 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~   83 (271)
                      .||||+||..|+.++|++|+++|++++..|..|.||    ||+|+..|+.+++++|+++|+++          |++|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~Tp----L~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP----LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCH----HHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            499999999999999999999999999999999999    99999999999999999998765          9999999


Q ss_pred             ChHH-HHHHHhcCCC---------------------------------CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCC
Q psy8012          84 KYDE-VKKNIEDGAC---------------------------------INVSSERCGSALIYAAWKGYEEIVDLLLDNGA  129 (271)
Q Consensus        84 ~~~~-~~~ll~~~~~---------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  129 (271)
                      +..+ +++|+....+                                 .+..+..+.++++.|+..++.+++++|++.|+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999 9988865443                                 23345678899999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHH-----------------
Q psy8012         130 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVL-----------------  191 (271)
Q Consensus       130 ~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L-----------------  191 (271)
                      +++..+..+.+|||+|+.. ++.+++++|+++|++++..+. .|.||+|.+ .....++..++                 
T Consensus       157 ~~~~~~~~~~~~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~-~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  234 (408)
T d1n11a_         157 HPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  234 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcCCCcCchHHHHHHHc-CCHHHHHHHHhcCCcccccCC-CCCCcchhhhccchhhhhhhhhhccccccccCCCCCCH
Confidence            9999999999999999998 999999999999999887765 555555555 44444444444                 


Q ss_pred             ----------------HhchhhHHHHhhcCCcccc-----cchHHHHHHHhhccCCCCCCCCCCc---------------
Q psy8012         192 ----------------LYFIHEIFKLMANNDTTIL-----DRLDEMKSLILEGTKEFGPGDYNNF---------------  235 (271)
Q Consensus       192 ----------------~~~g~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~---------------  235 (271)
                                      ...+...+..+..+.++..     ...+++++|+..|++..........               
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~  314 (408)
T d1n11a_         235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK  314 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeee
Confidence                            3333333222222222111     3467777777777665433222111               


Q ss_pred             -----ccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         236 -----SLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       236 -----~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                           ...++.+|..|+||||+|+++|+.+++++|-+.
T Consensus       315 ~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~  352 (408)
T d1n11a_         315 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  352 (408)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             eeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence                 122678999999999999999999999999763

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=3.6e-36  Score=242.94  Aligned_cols=208  Identities=23%  Similarity=0.250  Sum_probs=186.9

Q ss_pred             CCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKN   79 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~   79 (271)
                      +.+|.|+|+.||+.|+.++|++|+++|++++.+|..|.||    ||+|+..|+.+++++|+++|.++          ++.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~----L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTA----LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA  112 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcH----HHHHHhcCCceeeeeecccccccccccccccccccc
Confidence            4456799999999999999999999999999999999999    99999999999999999998764          999


Q ss_pred             HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCC--------------------------c
Q psy8012          80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDN-GAD--------------------------V  131 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~--------------------------~  131 (271)
                      ++..++.+ ++.|++.|...+..+..+.+++++|+..+..+.++.++.. +.+                          .
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            99999999 9999999999999999999999999999998888887742 222                          2


Q ss_pred             cccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012         132 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL  210 (271)
Q Consensus       132 ~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~  210 (271)
                      ...+..|.||||.|+.. ++.+++++|++.|++++.++. .|+||||+| ..|+.+++++|+++|++++           
T Consensus       193 ~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~g~din~~~~-~g~TpL~~A~~~g~~~iv~lLl~~Gadv~-----------  259 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCDME-----------  259 (291)
T ss_dssp             CCCTTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             ccccCCCCChhhHHHHc-CChhhhcccccceeccccccc-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----------
Confidence            33467899999999999 999999999999999999998 899999999 9999999999999999854           


Q ss_pred             cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                                                    .+|..|+||||+|++    +++++|.+.
T Consensus       260 ------------------------------~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         260 ------------------------------AVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             ------------------------------CCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             ------------------------------CcCCCCCCHHHHHHH----HHHHHHHHH
Confidence                                          789999999999986    466666554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-34  Score=221.16  Aligned_cols=180  Identities=22%  Similarity=0.245  Sum_probs=171.6

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------H
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------L   77 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l   77 (271)
                      .+|.+|.||||+||..|+.+++++++..+......+..+.++    ++.|+..++.+++++|+++|+++          |
T Consensus        32 ~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL  107 (223)
T d1uoha_          32 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP----LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL  107 (223)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CcCCCCCCHHHHHHHhhhhccccccccccccccccccccccc----ccccccccccchhHHHhccCceeEeeCCCCCchh
Confidence            568899999999999999999999999999999888899999    99999999999999999987654          9


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      |+|+..+..+ +++|+++|++++.++..|.||||+|+..++.+++++|.+.+.+++..+..|+||||+|+.. ++.++++
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~-g~~~~v~  186 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-ERVEEAK  186 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHH
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceecccccc-CcHHHHH
Confidence            9999999999 9999999999999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             HHHhCCCCccccCCCCCCCHHHHHhcCCchHHHHHHh
Q psy8012         157 KLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY  193 (271)
Q Consensus       157 ~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~  193 (271)
                      +|++.|+|++.+|. +|+||||+|..|+.+++++|++
T Consensus       187 ~LL~~Gad~~~~d~-~g~tpl~~A~~~~~~i~~~Ll~  222 (223)
T d1uoha_         187 LLVSQGASIYIENK-EEKTPLQVAKGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCCSCCCCT-TSCCHHHHCCTTHHHHHHHHHC
T ss_pred             HHHHCCCCCCCCCC-CCCCHHHHHHCCCHHHHhcccC
Confidence            99999999999998 9999999996688999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-34  Score=223.66  Aligned_cols=204  Identities=20%  Similarity=0.186  Sum_probs=183.8

Q ss_pred             CChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------------HHH
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------------LKN   79 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------------l~~   79 (271)
                      .||||+||..|+.+++++|++. +.+++.+|.+|.||    ||+|+..|+.+++++|+++|+++             +++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~Tp----L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~   76 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP----LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   76 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCH----HHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCH----HHHHHHcCCccccchhhhhhccccccccccccccccccc
Confidence            4899999999999999999885 57899999999999    99999999999999999998764             899


Q ss_pred             HHhcChHH-HHHHHhcCCCCc--cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          80 VRSNKYDE-VKKNIEDGACIN--VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      +...+..+ ++.++..+...+  ..+..+.|+++.++..++.++++.|++.|.+.+..+..|+||||+|+.. ++.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~  155 (229)
T d1ixva_          77 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLIE  155 (229)
T ss_dssp             HHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhc-ccccccc
Confidence            99999999 999888877544  4567889999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHhCC-CCccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         157 KLLRHG-AYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       157 ~Ll~~g-~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +|++.| .+++.++. .|+||||+| ..++.+++++|++ .|+++                                   
T Consensus       156 ~Ll~~~~~~in~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-----------------------------------  199 (229)
T d1ixva_         156 LLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAEY-----------------------------------  199 (229)
T ss_dssp             HHHTTTCCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHCCCS-----------------------------------
T ss_pred             ccccccccccccccc-ccCCchhhhcccccHHHHHHHHHhcCCCC-----------------------------------
Confidence            999987 68899998 999999999 9999999999996 47774                                   


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                            +.+|..|.||||+|++.   +++++|.+
T Consensus       200 ------~~~d~~g~t~l~~A~~~---~~~~~Ll~  224 (229)
T d1ixva_         200 ------DLVDNKGAKAEDVALNE---QVKKFFLN  224 (229)
T ss_dssp             ------CCCCTTSCCTGGGCSCH---HHHHHHHH
T ss_pred             ------CCcCCCCCCHHHHHhhH---HHHHHHHH
Confidence                  47899999999999854   68888765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=224.98  Aligned_cols=238  Identities=23%  Similarity=0.250  Sum_probs=185.0

Q ss_pred             CCCChHHHHHHhCCHHHHHHHHHCCCCCCchh-hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHH
Q psy8012          12 EDHKPIAIAIQIGDPQIVKELQNHGAQIDKEI-YSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNV   80 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a   80 (271)
                      ++.|+||.|++.|++++|++|+++|++++.++ ..|.||    ||+|+..|+.+++++|++.+..+          .+.+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tp----L~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP----LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCH----HHHHHHcCCHHHhhhhccccccccccccccchhhHHH
Confidence            46799999999999999999999999999765 469999    99999999999999999987654          6777


Q ss_pred             HhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhC
Q psy8012          81 RSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK----------SATGFTALHMACRFH  149 (271)
Q Consensus        81 ~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~t~l~~a~~~~  149 (271)
                      ...+... ....+....+....+..+.++++.|+..+....+..++....+++..          ...|.||||+|+.. 
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-  158 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-  158 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH-
T ss_pred             hhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHc-
Confidence            7777777 77777777766666777888888888888888888777765554432          34577888888887 


Q ss_pred             CCHHHHHHHHhC-CCCccccCCCCCCCHHHHH-h----cCCchHHHHHHhchhhHHHHhhcCCcccc-----cchHHHHH
Q psy8012         150 DDDSIVRKLLRH-GAYYNVVDGKTGKTPLLHA-G----KGAREVNTVLLYFIHEIFKLMANNDTTIL-----DRLDEMKS  218 (271)
Q Consensus       150 ~~~~~~~~Ll~~-g~~~~~~~~~~g~tpL~~A-~----~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-----~~~~~~~~  218 (271)
                      ++.+++++|++. |++++..+. .|.+++..+ .    .+..+++++|+++|++++.++..+.++.+     ...+++++
T Consensus       159 ~~~~~~~~Ll~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~  237 (285)
T d1wdya_         159 GHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             TCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhccCCCcccccC-CCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHH
Confidence            888888888754 778888777 777777654 2    22346788888888887655444443322     34777887


Q ss_pred             HHhh-ccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         219 LILE-GTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       219 l~~~-~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      |+.. |++             ++.+|..|.||||+|++.|+.+++++|-+.
T Consensus       238 lL~~~g~d-------------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~  275 (285)
T d1wdya_         238 LLEQEHIE-------------INDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             HHHSSSCC-------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCCC-------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            7763 655             678999999999999999999999998663

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1.3e-33  Score=225.99  Aligned_cols=215  Identities=19%  Similarity=0.221  Sum_probs=177.5

Q ss_pred             CCCCCCCCCChHHHHHHhCCHHHHHHH--------HHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-
Q psy8012           6 DPYVPYEDHKPIAIAIQIGDPQIVKEL--------QNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-   76 (271)
Q Consensus         6 ~~~~~~~g~t~L~~A~~~g~~~~~~~L--------l~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-   76 (271)
                      +...+.+|.||||+||..|+.+++++|        ++.|+++|.+|..|.||    ||+|+..|+.+++++|+++|+++ 
T Consensus        26 n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp----Lh~A~~~g~~~iv~~Ll~~Gad~n  101 (277)
T d2fo1e1          26 NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP----LMLAVLARRRRLVAYLMKAGADPT  101 (277)
T ss_dssp             TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee----eccccccccccccccccccccccc
Confidence            334445799999999999999888766        56799999999999999    99999999999999999988765 


Q ss_pred             ---------HHHHHhcChHH-HHHHHhcC---CCCccCCCCCCcHHHHHHHhCCHH---HHHHHHHCCC--------Ccc
Q psy8012          77 ---------LKNVRSNKYDE-VKKNIEDG---ACINVSSERCGSALIYAAWKGYEE---IVDLLLDNGA--------DVN  132 (271)
Q Consensus        77 ---------l~~a~~~~~~~-~~~ll~~~---~~~~~~~~~g~t~l~~a~~~~~~~---~~~~Ll~~~~--------~~~  132 (271)
                               ++.|...++.. ++.+...+   ..++..+..+.++.+.+...+..+   .+..+.+...        ..+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence                     88999998888 77766543   345667778888988888876543   3334443321        123


Q ss_pred             ccCCCCCcHHHHHHHhCCCHHHHHHHH-hCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccc
Q psy8012         133 FKSATGFTALHMACRFHDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTIL  210 (271)
Q Consensus       133 ~~~~~~~t~l~~a~~~~~~~~~~~~Ll-~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~  210 (271)
                      ..+..|+||||+++.. ++.+++++++ ..+.+.+.++. .|+||||+| ..|+.+++++|+++|+++            
T Consensus       182 ~~~~~g~t~L~~~~~~-~~~~~~~~~l~~~~~~~~~~d~-~g~tpL~~A~~~g~~~iv~~Ll~~gadi------------  247 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGASV------------  247 (277)
T ss_dssp             SSSCCCCCTHHHHHSS-CCHHHHHHHHHHSCCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCS------------
T ss_pred             ccccCCCCcccccccc-ccccccccccccccccccccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCC------------
Confidence            3456889999999998 9999988755 67889999998 899999999 999999999999999885            


Q ss_pred             cchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHH
Q psy8012         211 DRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKK  267 (271)
Q Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~  267 (271)
                                                   +.+|..|+||||+|+++|+.+++++|.|
T Consensus       248 -----------------------------n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         248 -----------------------------EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             -----------------------------SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             -----------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                         4789999999999999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-33  Score=222.77  Aligned_cols=184  Identities=21%  Similarity=0.165  Sum_probs=155.4

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----------   76 (271)
                      ..|..|.||||+||+.|+.+++++|+++|++++.++..|.||    ||+|+..++.+++++|++.+...           
T Consensus        40 ~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp----L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  115 (255)
T d1oy3d_          40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA----LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (255)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH----HHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             CcCCCCCCccchHHhhcccccccccccccccccccccccchh----hhhhhccCchHHHHHHHhhccchhcccchhhhhH
Confidence            457789999999999999999999999999999999999999    99999999999999998875322           


Q ss_pred             ---------HHHHHh---cChHH--HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcccc-CCCCCcH
Q psy8012          77 ---------LKNVRS---NKYDE--VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFK-SATGFTA  141 (271)
Q Consensus        77 ---------l~~a~~---~~~~~--~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~t~  141 (271)
                               ......   .....  .......+..++.++..|.||||+|+..++.+++++|++.+++.+.. +..|.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~Tp  195 (255)
T d1oy3d_         116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (255)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             HhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccc
Confidence                     000000   00111  22222345567788999999999999999999999999999887764 5789999


Q ss_pred             HHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         142 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       142 l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      ||+|+.. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|+++|++
T Consensus       196 L~~A~~~-~~~~~v~~Ll~~gadin~~d~-~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         196 LHLAVEA-QAASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccc-cHHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999998 999999999999999999998 899999999 99999999999999996

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=221.26  Aligned_cols=189  Identities=17%  Similarity=0.160  Sum_probs=158.6

Q ss_pred             CCCChHHHHHHhCCHH----HHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH
Q psy8012          12 EDHKPIAIAIQIGDPQ----IVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE   87 (271)
Q Consensus        12 ~g~t~L~~A~~~g~~~----~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~   87 (271)
                      +|.||||+|+..|+.+    +++++...|++++.+|..|.||    ||+|+..++.++                      
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~Tp----Lh~A~~~~~~~i----------------------   54 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP----LHLAVITNQPEI----------------------   54 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCH----HHHHHHTTCHHH----------------------
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcc----cccccccccccc----------------------
Confidence            6999999999999964    4556667899999999999999    655555544444                      


Q ss_pred             HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcc------ccCCCCCcHHHHHHHhCCCHHHHHHHHhC
Q psy8012          88 VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN------FKSATGFTALHMACRFHDDDSIVRKLLRH  161 (271)
Q Consensus        88 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~  161 (271)
                      +++|++.|++++.++..|.|||++++..++.++++.|++.+....      .....|.||+|.|+.. ++.+.+++|++.
T Consensus        55 v~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~l~~~  133 (221)
T d1iknd_          55 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSL  133 (221)
T ss_dssp             HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhc-CChhheeeeccc
Confidence            555566788899999999999999999999999999998875533      2345688999999998 999999999999


Q ss_pred             CCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccc
Q psy8012         162 GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV  240 (271)
Q Consensus       162 g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (271)
                      |+.++..+..+|.||||+| ..|+.+++++|+++|+++                                         +
T Consensus       134 ~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-----------------------------------------~  172 (221)
T d1iknd_         134 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-----------------------------------------N  172 (221)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-----------------------------------------C
T ss_pred             CcccccccccCCCCccccccccccHHHHHHHHhcCCcc-----------------------------------------c
Confidence            9999988765799999999 999999999999999884                                         4


Q ss_pred             cccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         241 TKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       241 ~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                      .+|..|+||||+|+++++.+++++|.++
T Consensus       173 ~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         173 RVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            7899999999999999999999999875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=212.07  Aligned_cols=206  Identities=23%  Similarity=0.230  Sum_probs=181.5

Q ss_pred             CCCCChHHHHHHhCCHHHHHHHHH----CCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012          11 YEDHKPIAIAIQIGDPQIVKELQN----HGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus        11 ~~g~t~L~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      .+|.||||+||++|+.+++++|++    .|++++.+|..|.||    ||+|+..|+.+++++|+++|+++          
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~Tp----L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP----LHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCcc----ceehhcccccccccccccccccccccccccccc
Confidence            369999999999999999998875    799999999999999    99999999999999999998765          


Q ss_pred             HHHHHhcChHH-HHHHHhcCCC----CccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCcc-ccCCCCCcHHHHHHHhCC
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGAC----INVSSERCGSALIYAAWKGYEEIVDLLLDNGADVN-FKSATGFTALHMACRFHD  150 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~-~~~~~~~t~l~~a~~~~~  150 (271)
                      ++.|....... ++.+......    .+.......++++.+...........|.....+.. .....+.++++.|+.. +
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~-~  155 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-N  155 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-T
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHh-h
Confidence            88888888888 7777654322    34555677899999999999999999998876644 3457899999999998 9


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCC
Q psy8012         151 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGP  229 (271)
Q Consensus       151 ~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  229 (271)
                      ...+++.+++.|.+++.++. .|.||||+| ..|+.+++++|+++|++++                              
T Consensus       156 ~~~~~~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n------------------------------  204 (228)
T d1k1aa_         156 SLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRSGADSS------------------------------  204 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCCTT------------------------------
T ss_pred             hhhhhhhhhhhccccccccc-cCcchHHHHHHcCCHHHHHHHHHCCCCCC------------------------------
Confidence            99999999999999999998 899999999 9999999999999999854                              


Q ss_pred             CCCCCcccccccccCCCchHHHHHHHhCCCcHHH
Q psy8012         230 GDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEE  263 (271)
Q Consensus       230 ~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~  263 (271)
                                 .+|..|.||||+|+++|+.++++
T Consensus       205 -----------~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         205 -----------LKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -----------CCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -----------CCCCCCCCHHHHHHhCCCccccC
Confidence                       78999999999999999887764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-31  Score=205.55  Aligned_cols=183  Identities=21%  Similarity=0.208  Sum_probs=166.7

Q ss_pred             CCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCc---hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-------
Q psy8012           7 PYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDK---EIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-------   76 (271)
Q Consensus         7 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~---~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-------   76 (271)
                      ..+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|    +++++..+..++++.++..+...       
T Consensus        28 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          28 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTP----FHIACSVGNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCH----HHHHHHHTCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             cccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence            35688999999999999999999999999999874   45678999    99999999999999998886533       


Q ss_pred             -----HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhC
Q psy8012          77 -----LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNG-ADVNFKSATGFTALHMACRFH  149 (271)
Q Consensus        77 -----l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~t~l~~a~~~~  149 (271)
                           ++.++..++.+ ++.|+..+...+..+..|.||||+|+..|+.+++++|++.+ .+++..+..|+||||+|+.. 
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~-  182 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE-  182 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHT-
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccc-
Confidence                 89999999999 99999999999999999999999999999999999999987 67899999999999999998 


Q ss_pred             CCHHHHHHHHh-CCCCccccCCCCCCCHHHHHhcCCchHHHHHHhchhh
Q psy8012         150 DDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHE  197 (271)
Q Consensus       150 ~~~~~~~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~~g~~  197 (271)
                      ++.+++++|++ .|+|++.++. .|+||||+|.  +.+++++|+++|+|
T Consensus       183 ~~~~~v~~Ll~~~gad~~~~d~-~g~t~l~~A~--~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVAL--NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSCCCCT-TSCCTGGGCS--CHHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHhcCCCCCCcCC-CCCCHHHHHh--hHHHHHHHHHcCCC
Confidence            99999999996 5999999998 9999999992  23799999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.9e-31  Score=204.75  Aligned_cols=193  Identities=24%  Similarity=0.265  Sum_probs=152.2

Q ss_pred             HHHHHHHHCCCCCCc-hhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------HHHHHhcChHH-HHHHHhc
Q psy8012          27 QIVKELQNHGAQIDK-EIYSKNKAAARIAHSALELEERKAINDLLRLNLDF----------LKNVRSNKYDE-VKKNIED   94 (271)
Q Consensus        27 ~~~~~Ll~~g~~~~~-~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------l~~a~~~~~~~-~~~ll~~   94 (271)
                      ++|++|+++|++++. .|.+|.||    ||+||..|+.+++++|+..|+++          ++.+....... .......
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~----L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETS----LHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCH----HHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence            556666666666654 35566666    66666666666666666655433          56666666555 4433333


Q ss_pred             -CCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCC
Q psy8012          95 -GACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTG  173 (271)
Q Consensus        95 -~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g  173 (271)
                       ..........+.++.+.+.........+.|.+.+++++..+..|+|||++++.. +..++++.+++.+.+++..+. .|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~-~~~~~~~~l~~~~~~~~~~d~-~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV-NNTEAVNILLMHHANRDAQDD-KD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhccc-Ccceeeeeecccccccccccc-cc
Confidence             233344456788899999999999999999999999999999999999999998 999999999999999999998 89


Q ss_pred             CCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHH
Q psy8012         174 KTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDI  252 (271)
Q Consensus       174 ~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~  252 (271)
                      .||||+| ..|+.+++++|+++|++++                                         .+|..|.||||+
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n-----------------------------------------~~d~~g~Tpl~~  195 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANRE-----------------------------------------ITDHMDRLPRDV  195 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------------------------------CCCTTSCCHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCC-----------------------------------------CcCCCCCCHHHH
Confidence            9999999 9999999999999998854                                         789999999999


Q ss_pred             HHHhCCCcHHHHHH
Q psy8012         253 AKKRGFPLLEELEK  266 (271)
Q Consensus       253 A~~~~~~~~~~ll~  266 (271)
                      |+++|+.+++++|+
T Consensus       196 A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         196 ASERLHHDIVRLLD  209 (209)
T ss_dssp             HHHTTCHHHHHHHC
T ss_pred             HHHcCCHHHHhhcC
Confidence            99999999999873

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3.9e-30  Score=197.35  Aligned_cols=177  Identities=20%  Similarity=0.193  Sum_probs=161.9

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH-----------HH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD-----------FL   77 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~-----------~l   77 (271)
                      .|.+|.||||+||+.|+.+++++|++.|++++.++..+.++    ++.++..++.............           ..
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP----LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL   94 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccc----ccccccccccccccccccccccccccccccccccc
Confidence            46789999999999999999999999999999999999999    9999998888777776655322           26


Q ss_pred             HHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHH
Q psy8012          78 KNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR  156 (271)
Q Consensus        78 ~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  156 (271)
                      +.+....... .+.|...+++++..+..|.||+++++..+..++++.+++.+.+++..|..|.||||+|+.. ++.++++
T Consensus        95 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~-g~~~~v~  173 (209)
T d1ot8a_          95 ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE-GSYEASK  173 (209)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHH
T ss_pred             cccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccc-cHHHHHH
Confidence            6666666667 8889999999999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             HHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHH
Q psy8012         157 KLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVL  191 (271)
Q Consensus       157 ~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L  191 (271)
                      +|+++|+|++.++. .|+||||+| .+|+.+++++|
T Consensus       174 ~Ll~~gad~n~~d~-~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         174 ALLDNFANREITDH-MDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHCCCCCCCcCC-CCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999998 999999999 99999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-29  Score=183.32  Aligned_cols=151  Identities=22%  Similarity=0.214  Sum_probs=139.1

Q ss_pred             ChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHHHHh
Q psy8012          15 KPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKKNIE   93 (271)
Q Consensus        15 t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ll~   93 (271)
                      ++||+||..|+.+++++|+++|++++.+|..|.||                           ||+|+ .++.+ +++|++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~Tp---------------------------L~~A~-~~~~ei~~~Ll~   54 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA---------------------------LQVMK-LGNPEIARRLLL   54 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCH---------------------------HHHCC-SSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccc---------------------------ccccc-cccccccccccc
Confidence            89999999999999999999999999999999999                           44443 34555 777777


Q ss_pred             cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCC-CccccCCCC
Q psy8012          94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA-YYNVVDGKT  172 (271)
Q Consensus        94 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~-~~~~~~~~~  172 (271)
                      .|++++.++..+.++++.++..+..+.++.|++.+.+++..+..|.+|+++|+.. ++.+++++|+++|+ +++.++. .
T Consensus        55 ~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~d~-~  132 (156)
T d1ihba_          55 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNH-K  132 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCT-T
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccCC-C
Confidence            8889999999999999999999999999999999999999999999999999998 99999999999886 8899898 8


Q ss_pred             CCCHHHHH-hcCCchHHHHHHhch
Q psy8012         173 GKTPLLHA-GKGAREVNTVLLYFI  195 (271)
Q Consensus       173 g~tpL~~A-~~~~~~~~~~L~~~g  195 (271)
                      |.||||+| ..++.+++++|+++|
T Consensus       133 g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         133 GDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999 999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1.2e-28  Score=196.75  Aligned_cols=185  Identities=22%  Similarity=0.217  Sum_probs=156.5

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----   76 (271)
                      |.+++. +|.+|.||||+|++.|+.+++++|+++|++++.++..|.||    +++|+..++.+++..+...+...     
T Consensus        64 Gadvn~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~----l~~a~~~~~~~~~~~l~~~~~~~~~~~~  138 (277)
T d2fo1e1          64 GADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA----LHQAAANRDFGMMVYMLNSTKLKGDIEE  138 (277)
T ss_dssp             CCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH----HHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             CCCccc-cCCCCCeeecccccccccccccccccccccccccccccccc----ccchhhhcchhhhhhhhhcccccccccc
Confidence            566663 57899999999999999999999999999999999999999    99999999999999988764322     


Q ss_pred             --------HHHHHhcCh---HH-HHHHHhcCCC--------CccCCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCccccC
Q psy8012          77 --------LKNVRSNKY---DE-VKKNIEDGAC--------INVSSERCGSALIYAAWKGYEEIVDLLL-DNGADVNFKS  135 (271)
Q Consensus        77 --------l~~a~~~~~---~~-~~~ll~~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~  135 (271)
                              .+.+.....   .. +..+......        .+..+..|.||||+++..++.+.+++++ ..+.+.+..+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d  218 (277)
T d2fo1e1         139 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD  218 (277)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC
T ss_pred             cccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccC
Confidence                    444444332   22 4444433222        3445678999999999999999998755 6788899999


Q ss_pred             CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh
Q psy8012         136 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY  193 (271)
Q Consensus       136 ~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~  193 (271)
                      ..|+||||+|+.. ++.+++++|+++|+|++.+|. .|+||||+| ..|+.+++++|++
T Consensus       219 ~~g~tpL~~A~~~-g~~~iv~~Ll~~gadin~~d~-~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         219 EDGKTPIMLAAQE-GRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCCCS-SSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999 999999999999999999998 999999999 9999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=8.9e-29  Score=199.19  Aligned_cols=185  Identities=22%  Similarity=0.266  Sum_probs=158.7

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----   76 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----   76 (271)
                      |.+++ ..|.+|.||||+|+..|+.+++++|+++|.++...+..+.+|    |++|+..++.++++.|+++|...     
T Consensus        63 Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~----L~~a~~~~~~~~~~~l~~~~~~~~~~~~  137 (291)
T d1s70b_          63 GADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIP----LHAAASCGYLDIAEYLISQGAHVGAVNS  137 (291)
T ss_dssp             CCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCC-ccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccc----ccccccccccchhhcccccCcccccccc
Confidence            44433 457889999999999999999999999999999999999999    99999999999999999987543     


Q ss_pred             -----HHHHHhcChHH-HHHHHhc---------------------------CCCCccCCCCCCcHHHHHHHhCCHHHHHH
Q psy8012          77 -----LKNVRSNKYDE-VKKNIED---------------------------GACINVSSERCGSALIYAAWKGYEEIVDL  123 (271)
Q Consensus        77 -----l~~a~~~~~~~-~~~ll~~---------------------------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  123 (271)
                           +++|+..+..+ ++.++..                           .......+..|.||||+|+..|+.+++++
T Consensus       138 ~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  217 (291)
T d1s70b_         138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL  217 (291)
T ss_dssp             TSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             cCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcc
Confidence                 67777766666 6665532                           22334566789999999999999999999


Q ss_pred             HHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHHhcCCchHHHHHHhchh
Q psy8012         124 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIH  196 (271)
Q Consensus       124 Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~~g~  196 (271)
                      |++.|++++..+..|+||||+|+.. ++.+++++|+++|+|++.+|. .|+||||+|..   +++++|.+...
T Consensus       218 Ll~~g~din~~~~~g~TpL~~A~~~-g~~~iv~lLl~~Gadv~~~d~-~G~TaL~~A~e---~~~~~L~~~~~  285 (291)
T d1s70b_         218 LIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDMEAVNK-VGQTAFDVADE---DILGYLEELQK  285 (291)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TSCCTTTSCCS---GGGHHHHHHHH
T ss_pred             cccceecccccccCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHH---HHHHHHHHHhh
Confidence            9999999999999999999999998 999999999999999999998 99999999922   57777766543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.9e-28  Score=194.04  Aligned_cols=219  Identities=28%  Similarity=0.225  Sum_probs=148.8

Q ss_pred             CCCCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcH------
Q psy8012           2 GDPYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLD------   75 (271)
Q Consensus         2 g~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~------   75 (271)
                      |.+++...+..|.||||+|+..|+.+++++|++.+..+...+..+.+|    .+.|+..+..+.....++...+      
T Consensus        28 G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (285)
T d1wdya_          28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP----FLLAAIAGSVKLLKLFLSKGADVNECDF  103 (285)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH----HHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchh----hHHHhhcCCccccchhhhhccccccccc
Confidence            667777777889999999999999999999999999888887788888    8888888888877777776432      


Q ss_pred             ----HHHHHHhcChHH-HHHHHhcCCCCccC----------CCCCCcHHHHHHHhCCHHHHHHHHHC-CCCccccCCCCC
Q psy8012          76 ----FLKNVRSNKYDE-VKKNIEDGACINVS----------SERCGSALIYAAWKGYEEIVDLLLDN-GADVNFKSATGF  139 (271)
Q Consensus        76 ----~l~~a~~~~~~~-~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~  139 (271)
                          .++.++..+... +..++....+++..          ...|.||||+|+..|+.+++++|++. |++++..+..+.
T Consensus       104 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~  183 (285)
T d1wdya_         104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR  183 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred             CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCC
Confidence                266666666666 66666555444332          23466777777777777777777643 566666666666


Q ss_pred             cHHHHHHHh---CCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHh-chhhHHHHhhcCCcccc----
Q psy8012         140 TALHMACRF---HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLY-FIHEIFKLMANNDTTIL----  210 (271)
Q Consensus       140 t~l~~a~~~---~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~-~g~~~~~~~~~~~~~~~----  210 (271)
                      +++..+...   .+..+++++|+++|++++.++. .|.||||+| ..++.+++++|++ .|++++..+..+. +++    
T Consensus       184 ~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~-~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~-TpL~~A~  261 (285)
T d1wdya_         184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAV  261 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT-TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC-CHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHCCCCCCccCC-CCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCC-CHHHHHH
Confidence            665554432   1223466666667777766665 667777766 6666777776665 3666655444333 333    


Q ss_pred             --cchHHHHHHHhhccCC
Q psy8012         211 --DRLDEMKSLILEGTKE  226 (271)
Q Consensus       211 --~~~~~~~~l~~~~~~~  226 (271)
                        ...+++++|+..||+.
T Consensus       262 ~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         262 ELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HTTCHHHHHHHHHHSSCS
T ss_pred             HcCCHHHHHHHHHCCCCC
Confidence              3466667777777664

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-28  Score=176.50  Aligned_cols=149  Identities=25%  Similarity=0.262  Sum_probs=134.4

Q ss_pred             ChHHHHHHhCCHHHHHHHHHC-CCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHHHH
Q psy8012          15 KPIAIAIQIGDPQIVKELQNH-GAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKKNI   92 (271)
Q Consensus        15 t~L~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~ll   92 (271)
                      +.|+.||..|+.++|++|++. +++++.+|..|.||    ||+|                       +. ++.+ +++|+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~----L~~A-----------------------~~-~~~~~v~~Ll   55 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA----LQVM-----------------------MF-GSTAIALELL   55 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCH----HHHS-----------------------CT-TCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcc----cccc-----------------------cc-cccccccccc
Confidence            459999999999999999986 78999999999999    5444                       43 3334 66667


Q ss_pred             hcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCC
Q psy8012          93 EDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT  172 (271)
Q Consensus        93 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~  172 (271)
                      +.+.+++..+..|.+|+++++..++.+++++++++|++++..+..|+||||+|+.. ++.+++++|+ .|++++.++. .
T Consensus        56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~-~~~~i~~~L~-~~~~~~~~d~-~  132 (156)
T d1bd8a_          56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLA-AESDLHRRDA-R  132 (156)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHH-TTSCTTCCCT-T
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccc-cccccccccc-ccccccccCC-C
Confidence            77888999999999999999999999999999999999999999999999999999 9999999887 7899999998 9


Q ss_pred             CCCHHHHH-hcCCchHHHHHHhc
Q psy8012         173 GKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       173 g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      |+||||+| ..|+.+++++|++|
T Consensus       133 G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         133 GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999 99999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-28  Score=189.81  Aligned_cols=168  Identities=25%  Similarity=0.310  Sum_probs=147.0

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHH
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEV   88 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~   88 (271)
                      .|.+|.||||+||..|+.+++++|++.|++++.++..|.||    +++|+..++.++++.++..+..             
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~----l~~~~~~~~~~~~~~l~~~~~~-------------   97 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP----LHLACEQGCLASVGVLTQSCTT-------------   97 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH----HHHHHHHTCHHHHHHHHHSTTT-------------
T ss_pred             CCCCCCccccccccccccccccccccccccccccccccccc----cccccccccccccchhhhhccc-------------
Confidence            46789999999999999999999999999999999999999    8888888888888888776432             


Q ss_pred             HHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCCHHHHHHHHhCCCCccc
Q psy8012          89 KKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDSIVRKLLRHGAYYNV  167 (271)
Q Consensus        89 ~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~  167 (271)
                         .............|.||+|.|+..++.+.+++|+..|..++..+ ..|+||||+|++. ++.+++++|+++|+|++.
T Consensus        98 ---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~-g~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_          98 ---PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-QNPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             ---TSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHTTTCCSCC
T ss_pred             ---ccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccc-ccHHHHHHHHhcCCcccc
Confidence               01112233445568999999999999999999999998887764 6799999999998 999999999999999999


Q ss_pred             cCCCCCCCHHHHH-hcCCchHHHHHHhchhhH
Q psy8012         168 VDGKTGKTPLLHA-GKGAREVNTVLLYFIHEI  198 (271)
Q Consensus       168 ~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~  198 (271)
                      ++. .|+||||+| ..++.+++++|++.+.+.
T Consensus       174 ~~~-~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         174 VTY-QGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CCT-TCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             cCC-CCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            998 999999999 999999999999997764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.2e-27  Score=174.38  Aligned_cols=149  Identities=26%  Similarity=0.314  Sum_probs=132.0

Q ss_pred             CChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHh
Q psy8012          14 HKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIE   93 (271)
Q Consensus        14 ~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~   93 (271)
                      .||||.||+.|+.+++++|+++|++++ .+..|.||    ||+|+..++.+++..+                      +.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~----L~~a~~~~~~~~~~~~----------------------~~   55 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSP----LHLAAQYGHFSTTEVL----------------------LR   55 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCH----HHHHHHHTCHHHHHHH----------------------HT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcc----cccccccccccccccc----------------------cc
Confidence            499999999999999999999999887 58899999    7777666666555444                      44


Q ss_pred             cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCC
Q psy8012          94 DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTG  173 (271)
Q Consensus        94 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g  173 (271)
                      ...........+.++++.++...+.+.++++.+.+++.+..+..|+||||+|+.. ++.+++++|++.|++++.++. .|
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~-g~~~iv~~ll~~gad~~~~d~-~g  133 (153)
T d1awcb_          56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSK-FC  133 (153)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT-TS
T ss_pred             ccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhc-chhheeeeccccccCCcccCC-CC
Confidence            5555566677788999999999999999999999999999999999999999998 999999999999999999998 99


Q ss_pred             CCHHHHH-hcCCchHHHHH
Q psy8012         174 KTPLLHA-GKGAREVNTVL  191 (271)
Q Consensus       174 ~tpL~~A-~~~~~~~~~~L  191 (271)
                      .||||+| .+|+.+++++|
T Consensus       134 ~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         134 KTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHhC
Confidence            9999999 99999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=3.7e-30  Score=212.30  Aligned_cols=219  Identities=13%  Similarity=0.040  Sum_probs=147.0

Q ss_pred             CCCCCChHHHHHHhCCHHHHHH---HHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChH
Q psy8012          10 PYEDHKPIAIAIQIGDPQIVKE---LQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYD   86 (271)
Q Consensus        10 ~~~g~t~L~~A~~~g~~~~~~~---Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~   86 (271)
                      +..|.||||+||++|+.+++++   |++.|++++.++..|.||    ||+|+..|+.+++++|+                
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~ta----L~~Aa~~G~~~~v~~Ll----------------  146 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA----FRLAAENGHLHVLNRLC----------------  146 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHH----HHHHHHTTCHHHHHHHH----------------
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCH----HHHHHHCCCHHHHHHHH----------------
Confidence            5678999999999999887765   788999999999999999    66666666655555554                


Q ss_pred             HHHHHHhcCCCCccCC--CCCCcHHHHHHHhCCHHHHHHHHHCCCCcc---ccCCCCCcHHHHHHHhCCCHHHHHHHHhC
Q psy8012          87 EVKKNIEDGACINVSS--ERCGSALIYAAWKGYEEIVDLLLDNGADVN---FKSATGFTALHMACRFHDDDSIVRKLLRH  161 (271)
Q Consensus        87 ~~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~  161 (271)
                            +.|++++..+  ..|.||||+|+..|+.+++++|++.|.+..   ..+..+.||++.|+.. |+.+++++|++.
T Consensus       147 ------~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~-g~~~iv~~Ll~~  219 (346)
T d2ajaa1         147 ------ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR-GHHNVINFLLDC  219 (346)
T ss_dssp             ------HSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT-CCHHHHHHHTTS
T ss_pred             ------HcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc-CHHHHHHHHHhC
Confidence                  4556666554  358899999999999999999999987643   3344567788888887 999999999999


Q ss_pred             CCCccccCCCCCCCHHHHHhcCCchHHHHHHhchhhHHHHh-------hcC---------------------Ccccccch
Q psy8012         162 GAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIHEIFKLM-------ANN---------------------DTTILDRL  213 (271)
Q Consensus       162 g~~~~~~~~~~g~tpL~~A~~~~~~~~~~L~~~g~~~~~~~-------~~~---------------------~~~~~~~~  213 (271)
                      |++++..+. ...      ..++..+..++...........       ..+                     .......+
T Consensus       220 ga~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~l  292 (346)
T d2ajaa1         220 PVMLAYAEI-HEF------EYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLL  292 (346)
T ss_dssp             HHHHHHHHH-CTT------TTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGH
T ss_pred             CCCcchHHH-HHH------HcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChH
Confidence            887764432 111      2223333333322211110000       000                     00111347


Q ss_pred             HHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHHHHHHHHhc
Q psy8012         214 DEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLAE  270 (271)
Q Consensus       214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~~~  270 (271)
                      +.+++|+..+.....        ...+.++.+|+||||+|+++|+.+++++|-+.|+
T Consensus       293 d~v~~Ll~~~~~~~~--------~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         293 DDIRFLLSIPGIKAL--------APTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHHTSTTTGGG--------SSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHHhCcChhhh--------cccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            788888877654211        0123566789999999999999999999988775

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.6e-28  Score=175.65  Aligned_cols=147  Identities=25%  Similarity=0.282  Sum_probs=131.5

Q ss_pred             HHHHHhcChHH-HHHHHh-cCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIE-DGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI  154 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  154 (271)
                      |+.|+..|+.+ ++.|+. .+++++..|..|.||||+|+ .++.+++++|++.+.+++..+..|.+|++.++.. ++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc-ccccc
Confidence            56666666666 666665 47899999999999999987 4889999999999999999999999999999998 99999


Q ss_pred             HHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCC
Q psy8012         155 VRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYN  233 (271)
Q Consensus       155 ~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  233 (271)
                      +++++++|++++.++. .|.||||+| ..++.+++++|+ .|+++                                   
T Consensus        84 ~~~~l~~~~~~n~~~~-~~~t~L~~A~~~~~~~i~~~L~-~~~~~-----------------------------------  126 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA-AESDL-----------------------------------  126 (156)
T ss_dssp             HHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHH-TTSCT-----------------------------------
T ss_pred             cccccccccccccccC-CCCeeecccccccccccccccc-ccccc-----------------------------------
Confidence            9999999999999998 899999999 999999999887 56653                                   


Q ss_pred             CcccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         234 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       234 ~~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                            +.+|..|+||||+|+++|+.+++++|.++
T Consensus       127 ------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         127 ------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             ------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ------cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence                  47899999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-27  Score=174.49  Aligned_cols=149  Identities=26%  Similarity=0.266  Sum_probs=133.6

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      ||.|+..|+.+ ++.|++.|++++.+|..|.||||+|+ .++.+++++|++.|++++..+..+.++++.++.. +..+.+
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~-~~~~~~   82 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccc-cccccc
Confidence            55666666666 66667778899999999999999886 7899999999999999999999999999999999 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCC
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNN  234 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  234 (271)
                      ++|++.+.+++..+. .|.+|+|+| ..++.+++++|+++++..                                    
T Consensus        83 ~~l~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~~~~~~------------------------------------  125 (156)
T d1ihba_          83 QTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------------  125 (156)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------------
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccc------------------------------------
Confidence            999999999999998 899999999 999999999999987632                                    


Q ss_pred             cccccccccCCCchHHHHHHHhCCCcHHHHHHHH
Q psy8012         235 FSLLKVTKNDAGETILDIAKKRGFPLLEELEKKL  268 (271)
Q Consensus       235 ~~~~~~~~d~~g~tpl~~A~~~~~~~~~~ll~~~  268 (271)
                          .+.+|..|.||||+|++.|+.+++++|.+.
T Consensus       126 ----~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         126 ----VGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             ----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ----ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                447899999999999999999999999763

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.9e-27  Score=170.34  Aligned_cols=143  Identities=27%  Similarity=0.287  Sum_probs=125.2

Q ss_pred             HHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHH
Q psy8012          80 VRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL  158 (271)
Q Consensus        80 a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~L  158 (271)
                      |++.|+.+ +++|+++|++++ .+..|.||||+|+..++.+.+..++.........+..+.++++.++.. .+.++++++
T Consensus         9 Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   86 (153)
T d1awcb_           9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVL   86 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccc-ccceeeecc
Confidence            33333333 444455566666 588999999999999999999999998888777788889999999998 999999999


Q ss_pred             HhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCccc
Q psy8012         159 LRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSL  237 (271)
Q Consensus       159 l~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  237 (271)
                      +..|++++.++. .|+||||+| ..|+.+++++|+++|++++                                      
T Consensus        87 ~~~~~~~~~~~~-~g~T~L~~A~~~g~~~iv~~ll~~gad~~--------------------------------------  127 (153)
T d1awcb_          87 LKHGADVNAKDM-LKMTALHWATEHNHQEVVELLIKYGADVH--------------------------------------  127 (153)
T ss_dssp             HTTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------------------------------------
T ss_pred             cccCCccccccc-cCchHHHhhhhcchhheeeeccccccCCc--------------------------------------
Confidence            999999999998 999999999 9999999999999999854                                      


Q ss_pred             ccccccCCCchHHHHHHHhCCCcHHHHHH
Q psy8012         238 LKVTKNDAGETILDIAKKRGFPLLEELEK  266 (271)
Q Consensus       238 ~~~~~d~~g~tpl~~A~~~~~~~~~~ll~  266 (271)
                         .+|..|.||||+|+++|+.+++++|+
T Consensus       128 ---~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         128 ---TQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             ---CCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             ---ccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence               78999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=173.14  Aligned_cols=176  Identities=28%  Similarity=0.279  Sum_probs=157.1

Q ss_pred             CCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH-----------
Q psy8012           8 YVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDF-----------   76 (271)
Q Consensus         8 ~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~-----------   76 (271)
                      ..|.+|.||||+|+..|+.+++++|+++|++++..+..+.++    ++.|....+.++++.........           
T Consensus        35 ~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (228)
T d1k1aa_          35 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA----AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  110 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH----HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             ccCCCCCccceehhcccccccccccccccccccccccccccc----cccccccccccchhhhhhcccccccccccccccc
Confidence            456789999999999999999999999999999999999999    99999999999999887764322           


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCCCc-cCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGACIN-VSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDD  151 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~  151 (271)
                         ++.+....... .+.+.....+.. .....+.++++.|+..+...+++++++.|..++..+..|.||||+|+.. ++
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~  189 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GL  189 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH-TC
T ss_pred             ccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHc-CC
Confidence               77888877777 888877766543 4456789999999999999999999999999999999999999999999 99


Q ss_pred             HHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHH
Q psy8012         152 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNT  189 (271)
Q Consensus       152 ~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~  189 (271)
                      .+++++|+++|+|++.++. .|+||||+| .+++.+++|
T Consensus       190 ~~~v~~Ll~~Gad~n~~d~-~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         190 LPLVRTLVRSGADSSLKNC-HNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTCCCT-TSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCCCC-CCCCHHHHHHhCCCccccC
Confidence            9999999999999999998 999999999 888887764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.6e-26  Score=160.67  Aligned_cols=119  Identities=24%  Similarity=0.246  Sum_probs=106.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCC-CHHHHH-hc
Q psy8012         105 CGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK-TPLLHA-GK  182 (271)
Q Consensus       105 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~-tpL~~A-~~  182 (271)
                      +.++||+|+..|+.+++++|+++|++++..+..|.||+|.|+ . ++.+++++|+++|++++.++. .+. ||||+| ..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~ga~~~~~~~-~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCADP-ATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCCCT-TTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccccccccccc-ccccccccccccc
Confidence            468999999999999999999999999999999999999764 5 899999999999999999988 554 699999 99


Q ss_pred             CCchHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHHHhCCCcHH
Q psy8012         183 GAREVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE  262 (271)
Q Consensus       183 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~~~~~~~~~  262 (271)
                      |+.+++++|+++|+++                                         +.+|..|+||||+|+++|+.+++
T Consensus        80 g~~~~v~~Ll~~ga~~-----------------------------------------~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-----------------------------------------DVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-----------------------------------------SCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccc-----------------------------------------ccccCCCCCHHHHHHHcCCHHHH
Confidence            9999999999998874                                         47899999999999999999999


Q ss_pred             HHHHH
Q psy8012         263 ELEKK  267 (271)
Q Consensus       263 ~ll~~  267 (271)
                      ++|.+
T Consensus       119 ~~Lls  123 (125)
T d1bi7b_         119 RYLRA  123 (125)
T ss_dssp             HHHSS
T ss_pred             HHHHh
Confidence            99864

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-25  Score=156.54  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             CCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHH-HHHH
Q psy8012          13 DHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDE-VKKN   91 (271)
Q Consensus        13 g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~-~~~l   91 (271)
                      +.++||+|++.|+.+++++|+++|++++.++..|.||    +|+|                       . .++.+ +++|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~----l~~a-----------------------~-~g~~~~v~~L   54 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP----IQVM-----------------------M-MGSARVAELL   54 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCT----TTSS-----------------------C-TTCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccc----cccc-----------------------c-cccccccccc
Confidence            5688999999999999999999999988888888888    4333                       2 23444 5555


Q ss_pred             HhcCCCCccCCCCCC-cHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHh
Q psy8012          92 IEDGACINVSSERCG-SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR  160 (271)
Q Consensus        92 l~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~  160 (271)
                      ++.|++++.++..+. ||||+|+..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|++
T Consensus        55 l~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~-g~~~~v~~Lls  123 (125)
T d1bi7b_          55 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRA  123 (125)
T ss_dssp             HTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHc-CCHHHHHHHHh
Confidence            666677777766654 578888888888888888888888887777888888888877 78888877764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.7e-26  Score=160.66  Aligned_cols=92  Identities=28%  Similarity=0.252  Sum_probs=80.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCC
Q psy8012         106 GSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGA  184 (271)
Q Consensus       106 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~  184 (271)
                      .|||++|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|++++.++. .|+||||+| ..++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~g~din~~d~-~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH-STTTHHHHHHHSSCTTTCCSS-SCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc-cccccccccccccceeeeccc-ccccchhhhhhcCc
Confidence            4788899999999999999988888888888889999999888 888888888999999988887 889999988 8888


Q ss_pred             chHHHHHHhchhhHH
Q psy8012         185 REVNTVLLYFIHEIF  199 (271)
Q Consensus       185 ~~~~~~L~~~g~~~~  199 (271)
                      .+++++|+++|++++
T Consensus        81 ~~~v~~Ll~~Gad~~   95 (118)
T d1myoa_          81 VSCVKLLLSKGADKT   95 (118)
T ss_dssp             CHHHHHHHTTCCCSS
T ss_pred             hhhhhhhhcccccce
Confidence            888888888888743

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.8e-25  Score=177.30  Aligned_cols=169  Identities=18%  Similarity=0.167  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchhhcccchHHHHHHHHHHHHhH-------HHHHHHHH-----
Q psy8012           4 PYDPYVPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEIYSKNKAAARIAHSALELEER-------KAINDLLR-----   71 (271)
Q Consensus         4 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~~~~~l~~A~~~~~~-------~~~~~L~~-----   71 (271)
                      +.+...|.+|.||||+||..|+.+++++|+++|++++.+|..|.||    ||.|+..++.       ++++++..     
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~Tp----L~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC----LVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCH----HHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccH----HHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            3444458899999999999999999999999999999999999999    9999876542       33333332     


Q ss_pred             --cCcHHHHHHHhcCh------------HH-HHHHHhcCCCC-ccCCCCCCcHHHHHHHhCCHHHHH-----HHHHCCCC
Q psy8012          72 --LNLDFLKNVRSNKY------------DE-VKKNIEDGACI-NVSSERCGSALIYAAWKGYEEIVD-----LLLDNGAD  130 (271)
Q Consensus        72 --~g~~~l~~a~~~~~------------~~-~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~-----~Ll~~~~~  130 (271)
                        .|.++||.++..+.            .. +.+++..+... ......+.++++.+........+.     .++.  ..
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  251 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NM  251 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cC
Confidence              12233444333221            11 22222222221 111222223333332222211111     1111  12


Q ss_pred             ccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH
Q psy8012         131 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA  180 (271)
Q Consensus       131 ~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A  180 (271)
                      +|.+|..|+||||+|++. ++.+++++|+++|+|++.++. .|+|||++|
T Consensus       252 in~~D~~G~TpLh~A~~~-g~~~iv~~Ll~~GAd~~~~n~-~G~Tpl~~A  299 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFIANK-SGLRPVDFG  299 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHH-CCHHHHHHHHHTTCCTTCCCT-TSCCGGGGT
T ss_pred             ccCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCCCHHHHc
Confidence            567788899999999998 999999999999999999988 899999877

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=154.01  Aligned_cols=119  Identities=21%  Similarity=0.212  Sum_probs=106.3

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIV  155 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  155 (271)
                      |+.|+..|+.+ ++.|++.|++++.+|..|.||||+|+..++.+++++|++.|++++..|..|+||||+|+.. ++.+++
T Consensus         5 L~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v   83 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVC   83 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchh-hHHHHH
Confidence            55666666666 7777778899999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHhCCCCccccCCCCCCCHHHHH---hcCCchHHHHHHhchh
Q psy8012         156 RKLLRHGAYYNVVDGKTGKTPLLHA---GKGAREVNTVLLYFIH  196 (271)
Q Consensus       156 ~~Ll~~g~~~~~~~~~~g~tpL~~A---~~~~~~~~~~L~~~g~  196 (271)
                      ++|+++|++++..+...+.||++++   ..|+.+++++|+..+.
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999988764689998776   5688999999997654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-25  Score=154.89  Aligned_cols=120  Identities=23%  Similarity=0.266  Sum_probs=109.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCc
Q psy8012         107 SALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR  185 (271)
Q Consensus       107 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~  185 (271)
                      ++|+.|+..|+.+++++|+++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++. +|+||||+| ..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~g~~~~~~d~-~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc-ccccccccccccccccccccc-cCcccccccchhhHH
Confidence            579999999999999999999999999999999999999999 999999999999999999998 999999999 99999


Q ss_pred             hHHHHHHhchhhHHHHhhcCCcccccchHHHHHHHhhccCCCCCCCCCCcccccccc-cCCCchHHHHH--HHhCCCcHH
Q psy8012         186 EVNTVLLYFIHEIFKLMANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVTK-NDAGETILDIA--KKRGFPLLE  262 (271)
Q Consensus       186 ~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-d~~g~tpl~~A--~~~~~~~~~  262 (271)
                      +++++|+++|++++                                         .+ +..|.||++++  .++|+.+++
T Consensus        81 ~~v~~Ll~~ga~v~-----------------------------------------~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          81 QVCKFLVESGAAVF-----------------------------------------AMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHHHHHHHTTCCTT-----------------------------------------CCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHHHHHHcCCCcc-----------------------------------------cccCCCCCCHHHHHHHHHcChHHHH
Confidence            99999999999864                                         33 34578887766  688999999


Q ss_pred             HHHHHHh
Q psy8012         263 ELEKKLA  269 (271)
Q Consensus       263 ~ll~~~~  269 (271)
                      ++|....
T Consensus       120 ~~L~~~~  126 (130)
T d1ycsb1         120 QFLYGVQ  126 (130)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhHH
Confidence            9998743

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3e-25  Score=154.29  Aligned_cols=82  Identities=34%  Similarity=0.286  Sum_probs=47.9

Q ss_pred             CCccCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCCccccCCCCCCCH
Q psy8012          97 CINVSSERCGSALIYAAWKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP  176 (271)
Q Consensus        97 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tp  176 (271)
                      +++.++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+.. ++.+++++|+++|+|++.++. .|.||
T Consensus        27 d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~Gad~~~~d~-~G~t~  104 (118)
T d1myoa_          27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE-GHVSCVKLLLSKGADKTVKGP-DGLTA  104 (118)
T ss_dssp             CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTT-TCCHHHHHHHTTCCCSSSSSS-STCCC
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccchhhhhhc-CchhhhhhhhcccccceeeCC-CCCCH
Confidence            3333444445555555555555555666666666666666666666666665 666666666666666666665 56666


Q ss_pred             HHHH
Q psy8012         177 LLHA  180 (271)
Q Consensus       177 L~~A  180 (271)
                      ||+|
T Consensus       105 l~~a  108 (118)
T d1myoa_         105 LEAT  108 (118)
T ss_dssp             CCTC
T ss_pred             HHHH
Confidence            6655

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.4e-23  Score=148.33  Aligned_cols=119  Identities=24%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             HHHHHhcChHH-HHHHHhcCCCCccC------CCCCCcHHHHHHHh---CCHHHHHHHHHCCCCccccCCCCCcHHHHHH
Q psy8012          77 LKNVRSNKYDE-VKKNIEDGACINVS------SERCGSALIYAAWK---GYEEIVDLLLDNGADVNFKSATGFTALHMAC  146 (271)
Q Consensus        77 l~~a~~~~~~~-~~~ll~~~~~~~~~------~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~  146 (271)
                      |..|+..+... +..++..|.+++..      +..|.||||+|+..   +..+++++|+++|++++.+|..|+||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            44555555555 66666666554432      44566666666653   4556666666666666666666666666666


Q ss_pred             HhCCCHHHHHHHHhCCCCccccCCCCCCCHHHHH-hcCCchHHHHHHhchhh
Q psy8012         147 RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHE  197 (271)
Q Consensus       147 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~  197 (271)
                      .. ++.+++++|+++|++++.++. .|.||||+| ..++.+++++|++.+..
T Consensus        90 ~~-~~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          90 LT-DNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HT-TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cc-ccccccccccccCccccccCC-CCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            65 666666666666666666666 666666666 66666666666665443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=7e-24  Score=171.30  Aligned_cols=148  Identities=17%  Similarity=0.166  Sum_probs=102.8

Q ss_pred             CCCCCCch-hhcccchHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHhcChHHHHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8012          35 HGAQIDKE-IYSKNKAAARIAHSALELEERKAINDLLRLNLDFLKNVRSNKYDEVKKNIEDGACINVSSERCGSALIYAA  113 (271)
Q Consensus        35 ~g~~~~~~-~~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~l~~a~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~  113 (271)
                      .++++|.. |..|.||    ||+|+..|+.++++.|                      ++.|++++.+|..|.||||.|+
T Consensus        95 ~~~dvn~~~D~~G~T~----LH~Aa~~g~~~~v~~L----------------------l~~gad~~~~d~~G~TpL~~A~  148 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTP----LHWLTSIANLELVKHL----------------------VKHGSNRLYGDNMGESCLVKAV  148 (301)
T ss_dssp             SCCCSCSCCSTTCCCH----HHHHHHTTCHHHHHHH----------------------HHTTCCTTBCCTTCCCHHHHHH
T ss_pred             cCCCcCcCcCCCCCCH----HHHHHHcCCHHHHHHH----------------------HHCCCCCCcCCcccccHHHHhh
Confidence            46788865 8889999    6666665555555554                      5556777777777788888877


Q ss_pred             HhCCH-------HHHHHHHHCCCCccccCCCCCcHHHHHHHhCCC----HHH--------HHHHHhCCC-----------
Q psy8012         114 WKGYE-------EIVDLLLDNGADVNFKSATGFTALHMACRFHDD----DSI--------VRKLLRHGA-----------  163 (271)
Q Consensus       114 ~~~~~-------~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~----~~~--------~~~Ll~~g~-----------  163 (271)
                      ..++.       ++++++.   ..+...|..|+||||.++.. +.    ..+        +.++.+.+.           
T Consensus       149 ~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  224 (301)
T d1sw6a_         149 KSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHIIIT-SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE  224 (301)
T ss_dssp             HSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHHHH-HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----
T ss_pred             hcccchhhhhHHHHHHHHh---hhhhhcccccCCHHHHHHHH-hCccccHHHHHHHHHHHHHHHHhcCCcchhccccccc
Confidence            65542       3333333   23455566777788776653 22    112        222332221           


Q ss_pred             --------------------------CccccCCCCCCCHHHHH-hcCCchHHHHHHhchhhHHHHhhcCCcccccchHHH
Q psy8012         164 --------------------------YYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIHEIFKLMANNDTTILDRLDEM  216 (271)
Q Consensus       164 --------------------------~~~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  216 (271)
                                                .+|.+|. .|+||||+| ..|+.+++++|+++|++++                 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~-~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-----------------  286 (301)
T d1sw6a_         225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPF-----------------  286 (301)
T ss_dssp             -----------CHHHHHCSHHHHHHHTTTCCCT-TSCCHHHHHHHHCCHHHHHHHHHTTCCTT-----------------
T ss_pred             chhHHHHhcchHHHHHHHhhHHHHhcCccCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----------------
Confidence                                      2688888 899999999 9999999999999999854                 


Q ss_pred             HHHHhhccCCCCCCCCCCcccccccccCCCchHHHHHH
Q psy8012         217 KSLILEGTKEFGPGDYNNFSLLKVTKNDAGETILDIAK  254 (271)
Q Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~g~tpl~~A~  254 (271)
                                              ++|..|.||||+|+
T Consensus       287 ------------------------~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         287 ------------------------IANKSGLRPVDFGA  300 (301)
T ss_dssp             ------------------------CCCTTSCCGGGGTC
T ss_pred             ------------------------CCCCCCCCHHHHcC
Confidence                                    89999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.3e-22  Score=145.73  Aligned_cols=110  Identities=16%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             HHHHHHHHhHHHHHHHHHcCcH----------------HHHHHHhc---ChHH-HHHHHhcCCCCccCCCCCCcHHHHHH
Q psy8012          54 AHSALELEERKAINDLLRLNLD----------------FLKNVRSN---KYDE-VKKNIEDGACINVSSERCGSALIYAA  113 (271)
Q Consensus        54 l~~A~~~~~~~~~~~L~~~g~~----------------~l~~a~~~---~~~~-~~~ll~~~~~~~~~~~~g~t~l~~a~  113 (271)
                      |..|++.++...+..++..|.+                +||+|+..   +..+ +++|+++|++++.++..|.||||+|+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccccc
Confidence            6678888999888888887654                38999864   5667 99999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCCHHHHHHHHhCCCC
Q psy8012         114 WKGYEEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY  164 (271)
Q Consensus       114 ~~~~~~~~~~Ll~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~Ll~~g~~  164 (271)
                      ..|+.+++++|++.|++++..|..|+||||+|+.. ++.+++++|++.+..
T Consensus        90 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~-~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          90 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALSG  139 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccCccccccCCCCCCHHHHHHHc-CCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999998 999999999987654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=5.2e-24  Score=175.24  Aligned_cols=180  Identities=14%  Similarity=0.060  Sum_probs=135.9

Q ss_pred             CCCCCCChHHHHHHhCCHHHHHHHHHCCCCCCchh--hcccchHHHHHHHHHHHHhHHHHHHHHHcCcHH----------
Q psy8012           9 VPYEDHKPIAIAIQIGDPQIVKELQNHGAQIDKEI--YSKNKAAARIAHSALELEERKAINDLLRLNLDF----------   76 (271)
Q Consensus         9 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~g~~~~~~~--~~g~t~~~~~l~~A~~~~~~~~~~~L~~~g~~~----------   76 (271)
                      .+.+|.||||+||+.|+.++|++|+++|++++..+  ..|.||    ||+|+..|+.+++++|++.|+..          
T Consensus       122 ~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~----L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA----FRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH----HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh----hHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            46789999999999999999999999999998876  469999    99999999999999999988532          


Q ss_pred             ---HHHHHhcChHH-HHHHHhcCCCCccCC-------CCCCcHHHHHHHhCCHHHHHHHHHCCCC--ccccC-------C
Q psy8012          77 ---LKNVRSNKYDE-VKKNIEDGACINVSS-------ERCGSALIYAAWKGYEEIVDLLLDNGAD--VNFKS-------A  136 (271)
Q Consensus        77 ---l~~a~~~~~~~-~~~ll~~~~~~~~~~-------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~--~~~~~-------~  136 (271)
                         ++.|+..|+.+ +++|++.|++++..+       ..+.++++.++..+..+....+.....+  .+..+       .
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  277 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF  277 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccc
Confidence               67788899999 999999987654322       2334555555555544443333322211  12111       1


Q ss_pred             CCCcHHHHHHHhCCCHHHHHHHHhCCCCc-----cccCCCCCCCHHHHH-hcCCchHHHHHHhc
Q psy8012         137 TGFTALHMACRFHDDDSIVRKLLRHGAYY-----NVVDGKTGKTPLLHA-GKGAREVNTVLLYF  194 (271)
Q Consensus       137 ~~~t~l~~a~~~~~~~~~~~~Ll~~g~~~-----~~~~~~~g~tpL~~A-~~~~~~~~~~L~~~  194 (271)
                      .+.++++.++.. +..+++++|++.+...     +..+. .|.||||+| ..|+.+++++|++.
T Consensus       278 ~~~~~l~~a~~~-~~ld~v~~Ll~~~~~~~~~~~~~~~~-~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         278 YMLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPTATIPG-DANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHCCG-GGHHHHHHHHTSTTTGGGSSCCSSTT-CCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhhhHHHHHhcC-ChHHHHHHHHhCcChhhhcccccCCC-CCCcHHHHHHHcCcHHHHHHHhCC
Confidence            234678888877 8999999999887643     33334 689999999 99999999999986