Psyllid ID: psy8033


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MTARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
cccHHHHHHHHcccccccEEEEEEEEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEEEccccEEEEEEEEEEEEccccccc
cccHHHHHHHHcEEEccccEEEEEEEEEEccccccHHHHHHHHHHHccccccHHHHcccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEHHHHEcccccEEEEEEEEEEEHccccccc
MTARFEALNRALCinvgdskivgriesysckmagndKQFYKKFnseqgttpqdlqalsppqsglgispgrshyriesysckmagndKQFYKKFnseqgttpqdlqalsppqsglgispgrshysysckmagndKQFYKKFnseqgttpqdlqalsppqsglgispvAASLVMRKVLYWVMNAIdsnlsttageqyRTLRPHLWAALEdeivlpecdiysynpdltsdpfsedgslwsFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
mtarfealnralcinvgdskivgRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
MTARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
*****EALNRALCINVGDSKIVGRIESYSCKMAGNDKQFY*************************************************************************************************************************GISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKG****
**ARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFN*********************************************************************************************KKFNSEQGTTPQDLQALSPPQS***********************I******T****YRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAIN*I******
MTARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
**ARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTT***************************KMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIK*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFSCRAINLIKGGVNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q9H063256 Repressor of RNA polymera yes N/A 0.711 0.742 0.470 5e-41
A5D9C6260 Repressor of RNA polymera yes N/A 0.711 0.730 0.470 6e-41
Q6PGU2247 Repressor of RNA polymera yes N/A 0.674 0.728 0.497 1e-40
Q7ZWL6245 Repressor of RNA polymera N/A N/A 0.546 0.595 0.446 9e-38
Q5XIH0260 Repressor of RNA polymera yes N/A 0.543 0.557 0.441 4e-37
Q9D0U6258 Repressor of RNA polymera yes N/A 0.543 0.562 0.441 4e-37
Q54Y76278 Repressor of RNA polymera yes N/A 0.307 0.294 0.506 5e-18
O14109238 Repressor of RNA polymera yes N/A 0.243 0.273 0.369 3e-09
Q757K3397 Repressor of RNA polymera yes N/A 0.209 0.141 0.344 0.0005
Q8STI4283 Uncharacterized protein E yes N/A 0.292 0.275 0.309 0.0009
>sp|Q9H063|MAF1_HUMAN Repressor of RNA polymerase III transcription MAF1 homolog OS=Homo sapiens GN=MAF1 PE=1 SV=2 Back     alignment and function desciption
 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 123/202 (60%), Gaps = 12/202 (5%)

Query: 62  SGLGISPGRSHY--RIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPG 119
           S L +  G +H   RIESYSCKMAG+DK  +K+F  E    P  L+ALSPPQ+  G+SP 
Sbjct: 14  SQLTVETGDAHIIGRIESYSCKMAGDDKHMFKQFCQE--GQPHVLEALSPPQTS-GLSPS 70

Query: 120 RSHYSYSCKMAG--NDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLY 177
           R   S   +  G  +DK   K       T  +  +    P      +  +        L 
Sbjct: 71  RLSKSQGGEEEGPLSDKCSRKTLFYLIATLNESFR----PDYDFSTA-RSHEFSREPSLS 125

Query: 178 WVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWS 237
           WV+NA++ +L +   E ++ L+P LW A+++EI L ECDIYSYNPDL SDPF EDGSLWS
Sbjct: 126 WVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWS 185

Query: 238 FNYFFYNKKLKRIVFFSCRAIN 259
           FNYFFYNK+LKRIVFFSCR+I+
Sbjct: 186 FNYFFYNKRLKRIVFFSCRSIS 207




Element of the mTORC1 signaling pathway that acts as a mediator of diverse signals and that represses RNA polymerase III transcription. Inhibits the de novo assembly of TFIIIB onto DNA.
Homo sapiens (taxid: 9606)
>sp|A5D9C6|MAF1_BOVIN Repressor of RNA polymerase III transcription MAF1 homolog OS=Bos taurus GN=MAF1 PE=2 SV=1 Back     alignment and function description
>sp|Q6PGU2|MAF1_DANRE Repressor of RNA polymerase III transcription MAF1 homolog OS=Danio rerio GN=maf1 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZWL6|MAF1_XENLA Repressor of RNA polymerase III transcription MAF1 homolog OS=Xenopus laevis GN=maf1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIH0|MAF1_RAT Repressor of RNA polymerase III transcription MAF1 homolog OS=Rattus norvegicus GN=Maf1 PE=2 SV=1 Back     alignment and function description
>sp|Q9D0U6|MAF1_MOUSE Repressor of RNA polymerase III transcription MAF1 homolog OS=Mus musculus GN=Maf1 PE=2 SV=1 Back     alignment and function description
>sp|Q54Y76|MAF1_DICDI Repressor of RNA polymerase III transcription OS=Dictyostelium discoideum GN=maf1 PE=3 SV=1 Back     alignment and function description
>sp|O14109|MAF1_SCHPO Repressor of RNA polymerase III transcription maf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=maf1 PE=1 SV=5 Back     alignment and function description
>sp|Q757K3|MAF1_ASHGO Repressor of RNA polymerase III transcription MAF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MAF1 PE=3 SV=1 Back     alignment and function description
>sp|Q8STI4|YA60_ENCCU Uncharacterized protein ECU10_0060/ECU11_2080i OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU10_0060 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
383864653234 PREDICTED: repressor of RNA polymerase I 0.734 0.837 0.545 8e-55
110761001234 PREDICTED: repressor of RNA polymerase I 0.734 0.837 0.545 1e-54
307206415235 Repressor of RNA polymerase III transcri 0.734 0.834 0.536 7e-54
350407855234 PREDICTED: repressor of RNA polymerase I 0.734 0.837 0.536 7e-53
340721918234 PREDICTED: repressor of RNA polymerase I 0.734 0.837 0.536 1e-52
332029602345 Repressor of RNA polymerase III transcri 0.573 0.443 0.5 9e-47
270007640228 hypothetical protein TcasGA2_TC014322 [T 0.722 0.846 0.434 3e-46
189237428207 PREDICTED: similar to CG40196 CG40196-PA 0.719 0.927 0.432 1e-45
242024048231 conserved hypothetical protein [Pediculu 0.505 0.584 0.522 6e-45
442755273268 Putative negative effector of rna polyme 0.756 0.753 0.425 1e-44
>gi|383864653|ref|XP_003707792.1| PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Megachile rotundata] Back     alignment and taxonomy information
 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 120/220 (54%), Positives = 133/220 (60%), Gaps = 24/220 (10%)

Query: 62  SGLGISPGRSHY--RIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPG 119
           S L I  G S    RIESYSCKMAGNDKQ YK+FN+EQG TP DLQALSPPQ+ LG SP 
Sbjct: 14  SALSIKTGDSKIIGRIESYSCKMAGNDKQLYKRFNAEQGFTPHDLQALSPPQTSLGTSPA 73

Query: 120 RSHYSYS---------CKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASL 170
           + ++S S         C        FY          P D              P     
Sbjct: 74  QGYFSRSVSGDEDGPLCDTISRKTLFYLIATLNSAFHP-DYDFSDAKSHEFSKEP----- 127

Query: 171 VMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFS 230
                L WVMNA+DSNLS TAG+ YRTLR  LWAA++DEI L ECDIYSYNPD  SDPF 
Sbjct: 128 ----SLQWVMNAVDSNLSATAGDHYRTLRTALWAAIDDEISLSECDIYSYNPDFVSDPFG 183

Query: 231 EDGSLWSFNYFFYNKKLKRIVFFSCRAIN---LIKGGVNA 267
           EDG LWSFNYFFYNKKLKRIVFF CRAIN   ++  GV +
Sbjct: 184 EDGCLWSFNYFFYNKKLKRIVFFPCRAINPLYVLDSGVGS 223




Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761001|ref|XP_624527.2| PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Apis mellifera] gi|380015835|ref|XP_003691900.1| PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Apis florea] Back     alignment and taxonomy information
>gi|307206415|gb|EFN84453.1| Repressor of RNA polymerase III transcription MAF1-like protein [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350407855|ref|XP_003488216.1| PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Bombus impatiens] Back     alignment and taxonomy information
>gi|340721918|ref|XP_003399360.1| PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Bombus terrestris] Back     alignment and taxonomy information
>gi|332029602|gb|EGI69491.1| Repressor of RNA polymerase III transcription MAF1-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|270007640|gb|EFA04088.1| hypothetical protein TcasGA2_TC014322 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189237428|ref|XP_974378.2| PREDICTED: similar to CG40196 CG40196-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242024048|ref|XP_002432442.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517875|gb|EEB19704.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|442755273|gb|JAA69796.1| Putative negative effector of rna polymerase iii synthesis [Ixodes ricinus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
ZFIN|ZDB-GENE-040426-2788247 maf1 "MAF1 homolog (S. cerevis 0.310 0.336 0.686 3.3e-49
UNIPROTKB|Q7ZWL6245 maf1 "Repressor of RNA polymer 0.707 0.771 0.485 1.2e-40
UNIPROTKB|F1RSM9259 MAF1 "Uncharacterized protein" 0.711 0.733 0.480 3.3e-40
UNIPROTKB|A5D9C6260 MAF1 "Repressor of RNA polymer 0.711 0.730 0.470 6.8e-40
UNIPROTKB|Q3T0W8213 MAF1 "MAF1 homolog (S. cerevis 0.715 0.896 0.467 6.8e-40
UNIPROTKB|Q9H063256 MAF1 "Repressor of RNA polymer 0.711 0.742 0.470 6.8e-40
MGI|MGI:1916127258 Maf1 "MAF1 homolog (S. cerevis 0.711 0.736 0.475 6.8e-40
RGD|1359315260 Maf1 "MAF1 homolog (S. cerevis 0.711 0.730 0.475 6.8e-40
UNIPROTKB|E9PR76252 MAF1 "Repressor of RNA polymer 0.565 0.599 0.361 2.8e-38
UNIPROTKB|E9PSH4286 MAF1 "Repressor of RNA polymer 0.565 0.527 0.361 2.8e-38
ZFIN|ZDB-GENE-040426-2788 maf1 "MAF1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 331 (121.6 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query:   178 WVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWS 237
             WV NA++S+LS  AGE Y  L+P LW AL+ EI L ECDIYSYNPDL SDP+ E+G+LWS
Sbjct:   125 WVFNAVNSSLSAAAGEAYSHLQPQLWEALDKEISLAECDIYSYNPDLDSDPYGEEGNLWS 184

Query:   238 FNYFFYNKKLKRIVFFSCRAINL 260
             FNYFFYNK+LKRIVFF+CR+++L
Sbjct:   185 FNYFFYNKRLKRIVFFTCRSVSL 207


GO:0016480 "negative regulation of transcription from RNA polymerase III promoter" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA;ISS
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
UNIPROTKB|Q7ZWL6 maf1 "Repressor of RNA polymerase III transcription MAF1 homolog" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSM9 MAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9C6 MAF1 "Repressor of RNA polymerase III transcription MAF1 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0W8 MAF1 "MAF1 homolog (S. cerevisiae)" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H063 MAF1 "Repressor of RNA polymerase III transcription MAF1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916127 Maf1 "MAF1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359315 Maf1 "MAF1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PR76 MAF1 "Repressor of RNA polymerase III transcription MAF1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PSH4 MAF1 "Repressor of RNA polymerase III transcription MAF1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PGU2MAF1_DANRENo assigned EC number0.49730.67410.7287yesN/A
Q9H063MAF1_HUMANNo assigned EC number0.47020.71160.7421yesN/A
A5D9C6MAF1_BOVINNo assigned EC number0.47020.71160.7307yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
pfam09174177 pfam09174, Maf1, Maf1 regulator 9e-40
COG5046282 COG5046, MAF1, Protein involved in Mod5 protein so 5e-07
pfam09174177 pfam09174, Maf1, Maf1 regulator 4e-04
>gnl|CDD|220132 pfam09174, Maf1, Maf1 regulator Back     alignment and domain information
 Score =  135 bits (343), Expect = 9e-40
 Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 74  RIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGND 133
           R+E+YSCK AG+DK+ +K   SE      DL +LS P+S   ++   S+ + S     ++
Sbjct: 5   RLEAYSCKSAGSDKRLFKSIESEV--NNCDLSSLSSPESLSPLNLSDSNDNLSPFGPLSE 62

Query: 134 KQFYKKFNSEQGTTPQ-----DLQALSPPQSGLGISPVAASLVMRKVLYWVMNAIDSNLS 188
           K   K                D   L P                   L  V+N I++NLS
Sbjct: 63  KSSRKTLAYLIAILNASFPDYDFSVLKPHD-----------FKKEPSLSTVINEINNNLS 111

Query: 189 TTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLK 248
           +     Y +    LW  +++ I L +C+IYSYNPD   DPF EDG+LWSFNYFFYNKKLK
Sbjct: 112 SLVKNIYPSFVEELWEIIDEVISLKDCEIYSYNPDPDCDPFDEDGALWSFNYFFYNKKLK 171

Query: 249 RIVFFS 254
           R+VF S
Sbjct: 172 RVVFLS 177


Maf1 is a negative regulator of RNA polymerase III. It targets the initiation factor TFIIIB. Length = 177

>gnl|CDD|227379 COG5046, MAF1, Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|220132 pfam09174, Maf1, Maf1 regulator Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PF09174179 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is 100.0
KOG3104|consensus264 100.0
COG5046282 MAF1 Protein involved in Mod5 protein sorting [Pos 99.9
PF09174179 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is 93.81
COG5046282 MAF1 Protein involved in Mod5 protein sorting [Pos 87.09
>PF09174 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is a negative regulator of RNA polymerase III [, ] Back     alignment and domain information
Probab=100.00  E-value=1.1e-58  Score=403.13  Aligned_cols=177  Identities=48%  Similarity=0.777  Sum_probs=100.2

Q ss_pred             EEEeeceeeecccccchHHHHHHhhhhhCCCccccccCCCCCCCCCCCCCCCccceeeccccc-cCCCcccccccCCccC
Q psy8033          20 KIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCKM-AGNDKQFYKKFNSEQG   98 (267)
Q Consensus        20 ~i~gr~EayScK~~g~DKkL~K~l~~~~~~~~~~l~~lSpp~~~~~~sp~~~~~r~esyS~~~-~g~~~~~~k~f~~~~~   98 (267)
                      +|+||||+|||||+|+||||||+++++++.  +..+++++|+. .+.+|..       .++.. ..++.+++      +.
T Consensus         1 ~I~gr~E~YScK~~~~dKkl~k~l~~~~~~--~~~~~~~~~~~-~~~s~~~-------~~~~~~~~sp~g~L------~~   64 (179)
T PF09174_consen    1 HITGRIEAYSCKMAGSDKKLFKSLESELNN--QDSQSLSSPQS-RSLSPPS-------LSSSSSSSSPFGPL------SD   64 (179)
T ss_dssp             -B-EEEEEEEE--------------------------------------------------------------------T
T ss_pred             CeeeeeecccCcCccchHHHHHHHHHHhcc--ccccccCCccc-ccCCccc-------cccccccCCCCCcc------cc
Confidence            589999999999999999999999999753  23344555531 1233332       11111 11334444      66


Q ss_pred             CC-cccccccCCcccccccCCCCCCCccccccCCCchhHHhhhccccCCCccccccCCCCCCCCCCCcccCCceecccHH
Q psy8033          99 TT-PQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPVAASLVMRKVLY  177 (267)
Q Consensus        99 ~~-rk~l~~Ls~pi~tLn~s~~~pdydfS~~~~~~~~~~~~~~~~e~~~s~~~l~~~Sp~~~~~~~s~~~~~F~~e~s~~  177 (267)
                      .+ ||||+||   |+|||++ | ||||||.+.                                     |++|.+|++++
T Consensus        65 ~~sRKtl~yL---IatLNas-f-PDYDFS~l~-------------------------------------p~~F~~e~s~~  102 (179)
T PF09174_consen   65 TSSRKTLFYL---IATLNAS-F-PDYDFSNLR-------------------------------------PEDFSREPSLQ  102 (179)
T ss_dssp             T-S-HHHHHH---HHHHHHH-H-TT---TT---------------------------------------GGGEEE-S-HH
T ss_pred             cchhhHHHHH---HHHHhcc-C-CCcccccCC-------------------------------------HHHcEecCCHH
Confidence            65 9999999   9999999 7 999999633                                     69999999999


Q ss_pred             HHHHhhhhcccccccccccchhHHHHHHhhhhccCCcceeEEecCCCCCCCCCCCCccceeheeeeeCccceEEEEE
Q psy8033         178 WVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYFFYNKKLKRIVFFS  254 (267)
Q Consensus       178 ~v~~~id~~L~~~~~~~~~~~~~~lW~~Id~~I~L~dCeIYsY~Pd~~~DPf~E~G~LWSfnYFFyNKklKRVlff~  254 (267)
                      +|++.||++|.+++++.+..++++||.+||++|+|++|+||+|.||.++|||+|+|+||||||||||||+||||||+
T Consensus       103 ~v~~~i~~~L~~~~~~~~~~~~~~lW~~Id~~i~l~~C~iYsy~pd~~~dPf~e~g~lws~~yff~nkk~Krv~~~~  179 (179)
T PF09174_consen  103 SVINSINSNLSSLGKNYYSGFLPWLWKAIDEEIDLKDCDIYSYNPDSDSDPFAEDGCLWSFNYFFYNKKLKRVLFFS  179 (179)
T ss_dssp             HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH-GGG-EEEEE---GGG-TT-S---SEEEEEEEEETTTTEEEEEE
T ss_pred             HHHHHHHHHHHhhccccchhhhHHHHHHHHHhhCccCceEEEEccCCCCCccccccchheeeeeEEecCcceEEEeC
Confidence            99999999999998766668999999999999999999999999999999999999999999999999999999996



It targets the initiation factor TFIIIB []. ; PDB: 3NR5_A.

>KOG3104|consensus Back     alignment and domain information
>COG5046 MAF1 Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09174 Maf1: Maf1 regulator; InterPro: IPR015257 Maf1 is a negative regulator of RNA polymerase III [, ] Back     alignment and domain information
>COG5046 MAF1 Protein involved in Mod5 protein sorting [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3nr5_A164 Crystal Structure Of Human Maf1 Length = 164 2e-30
>pdb|3NR5|A Chain A, Crystal Structure Of Human Maf1 Length = 164 Back     alignment and structure

Iteration: 1

Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 55/82 (67%), Positives = 68/82 (82%) Query: 176 LYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSL 235 L WV+NA++ +L + E ++ L+P LW A+++EI L ECDIYSYNPDL SDPF EDGSL Sbjct: 83 LSWVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSL 142 Query: 236 WSFNYFFYNKKLKRIVFFSCRA 257 WSFNYFFYNK+LKRIVFFSCR+ Sbjct: 143 WSFNYFFYNKRLKRIVFFSCRS 164

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3nr5_A164 MAF1, repressor of RNA polymerase III transcriptio 5e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens} Length = 164 Back     alignment and structure
 Score =  120 bits (301), Expect = 5e-34
 Identities = 54/80 (67%), Positives = 67/80 (83%)

Query: 178 WVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWS 237
           WV+NA++ +L +   E ++ L+P LW A+++EI L ECDIYSYNPDL SDPF EDGSLWS
Sbjct: 85  WVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWS 144

Query: 238 FNYFFYNKKLKRIVFFSCRA 257
           FNYFFYNK+LKRIVFFSCR+
Sbjct: 145 FNYFFYNKRLKRIVFFSCRS 164


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3nr5_A164 MAF1, repressor of RNA polymerase III transcriptio 100.0
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.3e-60  Score=408.87  Aligned_cols=153  Identities=53%  Similarity=0.975  Sum_probs=139.9

Q ss_pred             cchHHHHHhhccccCCCeEEEeeceeeecccccchHHHHHHhhhhhCCCccccccCCCCCCCCCCCCCCCccceeecccc
Q psy8033           2 TARFEALNRALCINVGDSKIVGRIESYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYRIESYSCK   81 (267)
Q Consensus         2 ~~~~e~ln~~L~~~~~d~~i~gr~EayScK~~g~DKkL~K~l~~~~~~~~~~l~~lSpp~~~~~~sp~~~~~r~esyS~~   81 (267)
                      |.+||+||++|++++|||+|.||||+||||                            |.                 +  
T Consensus        12 ~~~~~~ln~~l~~~~gd~~i~g~iEayScK----------------------------pL-----------------~--   44 (164)
T 3nr5_A           12 NSSFEAINSQLTVETGDAHIIGRIESYSCK----------------------------PL-----------------S--   44 (164)
T ss_dssp             CHHHHHHHHHSBCC--CCCBCEEEEEEEEC----------------------------CC-----------------C--
T ss_pred             cCCHHHHHhhhceecCceEEEEEEeeeccc----------------------------cc-----------------c--
Confidence            689999999999999999999999999999                            11                 0  


Q ss_pred             ccCCCcccccccCCccCCCcccccccCCcccccccCCCCCCCccccccCCCchhHHhhhccccCCCccccccCCCCCCCC
Q psy8033          82 MAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGLGISPGRSHYSYSCKMAGNDKQFYKKFNSEQGTTPQDLQALSPPQSGL  161 (267)
Q Consensus        82 ~~g~~~~~~k~f~~~~~~~rk~l~~Ls~pi~tLn~s~~~pdydfS~~~~~~~~~~~~~~~~e~~~s~~~l~~~Sp~~~~~  161 (267)
                                     ...+||||+||   |+|||++ |+||||||.+.                                
T Consensus        45 ---------------~~~SRKTl~yL---IaTLNas-f~PDYDFS~lr--------------------------------   73 (164)
T 3nr5_A           45 ---------------DKCSRKTLFYL---IATLNES-FRPDYDFSTAR--------------------------------   73 (164)
T ss_dssp             ---------------TTCSCHHHHHH---HHHHHHH-HTTTCCCTTCC--------------------------------
T ss_pred             ---------------cchhhhhHHHH---HHHHHhh-cCCCCCcCCCC--------------------------------
Confidence                           11349999999   9999999 77999999733                                


Q ss_pred             CCCcccCCceecccHHHHHHhhhhcccccccccccchhHHHHHHhhhhccCCcceeEEecCCCCCCCCCCCCccceehee
Q psy8033         162 GISPVAASLVMRKVLYWVMNAIDSNLSTTAGEQYRTLRPHLWAALEDEIVLPECDIYSYNPDLTSDPFSEDGSLWSFNYF  241 (267)
Q Consensus       162 ~~s~~~~~F~~e~s~~~v~~~id~~L~~~~~~~~~~~~~~lW~~Id~~I~L~dCeIYsY~Pd~~~DPf~E~G~LWSfnYF  241 (267)
                           |++|.+|+++++|++.||++|++++++.+.+++++||++||++|+|+||+||+|+||.++|||+|+|+|||||||
T Consensus        74 -----p~~F~re~sl~~V~~~In~~L~s~~~~~~~~~~~~lW~~Id~~I~l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYF  148 (164)
T 3nr5_A           74 -----SHEFSREPSLSWVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYF  148 (164)
T ss_dssp             -----GGGEEECSCHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCGGGCEEEEECCCGGGCTTCSCCCSCEEEEE
T ss_pred             -----HHHCEecCCHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhhcCccCCeEEEEcCCCCCCCCCCCCceeeeeee
Confidence                 799999999999999999999999887788999999999999999999999999999989999999999999999


Q ss_pred             eeeCccceEEEEEEEe
Q psy8033         242 FYNKKLKRIVFFSCRA  257 (267)
Q Consensus       242 FyNKklKRVlff~~r~  257 (267)
                      |||||+||||||+|||
T Consensus       149 FyNKklKRVl~f~cr~  164 (164)
T 3nr5_A          149 FYNKRLKRIVFFSCRS  164 (164)
T ss_dssp             EEETTTTEEEEEEEEC
T ss_pred             EEecCcceEEEEEEeC
Confidence            9999999999999996




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00