Psyllid ID: psy8077

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MTSTKPPKVAIKSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
ccccccccEEEEEEEEEcccccccccHHHHHccccHHHHHHHHHHcccccccccccccccccHHHHHHHcccEEEEcccccEEEEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHcHHcHHHccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcc
ccccccccEEEEEEEEcccccccHEHHHEEHccccccEEEEEEEccccccEEEcccccEcccHHHHcccccEEEEEccccEEEEEEEEEcccEEEEEcccccEcccHHHHHHHHHcHHHHHcHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHHHHHHHccHEEEcccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHcc
mtstkppkvaIKSVQvfgrkppkvAIKSVQVFGRKKSATAVAYCKegkgnlrvdgrplemiePKLLQYKLQEPILLLGTKSATAVAYCKegkgnlrvdgrplemiePKLLQYKlqepilllgkdkfagvdIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTllgkdkfagvDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
mtstkppkvaiksvqvfgrkppkvaiksvqvfgrkksatavayckegkgnlrvdgrpLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKegkgnlrvdgrpLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQatgllgteKMLVKSTLtllgkdkfagvDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
MTSTKPPKVAIKSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
*************VQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYY**
**********IKSVQV*********************ATAVAYCKE****************************LLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTL****************VNGGGHVAQIYAIRQAISKALVAYYQK
********VAIKSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
****KPPKVAIKSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSTKPPKVAIKSVQVFGRKPPKVAIKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
Q9W237148 40S ribosomal protein S16 yes N/A 0.587 0.885 0.598 9e-36
P62251148 40S ribosomal protein S16 N/A N/A 0.524 0.790 0.637 4e-35
Q95V31151 40S ribosomal protein S16 N/A N/A 0.524 0.774 0.612 3e-34
P62250146 40S ribosomal protein S16 no N/A 0.524 0.801 0.612 1e-33
Q29201146 40S ribosomal protein S16 yes N/A 0.524 0.801 0.612 1e-33
P14131146 40S ribosomal protein S16 yes N/A 0.524 0.801 0.612 1e-33
P62249146 40S ribosomal protein S16 yes N/A 0.524 0.801 0.612 1e-33
Q3T0X6146 40S ribosomal protein S16 yes N/A 0.524 0.801 0.612 1e-33
Q98TR7146 40S ribosomal protein S16 N/A N/A 0.524 0.801 0.604 1e-32
Q90YQ7146 40S ribosomal protein S16 N/A N/A 0.524 0.801 0.596 2e-32
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 100/142 (70%), Gaps = 11/142 (7%)

Query: 66  LQYKLQEPILLLGT----KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121
           +Q K +EP+  +      K+ATAVAYCK G G L+V+GRPLE IEPK+LQYKLQEP+LLL
Sbjct: 1   MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query: 122 GKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLT 181
           GK+KFAGVDIRVRV+GGGHVAQIYAIRQAISKALVA+YQK          + +LV+   T
Sbjct: 61  GKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRT 120

Query: 182 LLGKD-------KFAGVDIRVR 196
           LL  D       KF G   R R
Sbjct: 121 LLVGDPRRCEPKKFGGPGARAR 142

Drosophila melanogaster (taxid: 7227)
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1 Back     alignment and function description
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1 Back     alignment and function description
>sp|P62250|RS16_RAT 40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2 Back     alignment and function description
>sp|Q29201|RS16_PIG 40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4 Back     alignment and function description
>sp|P14131|RS16_MOUSE 40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4 Back     alignment and function description
>sp|P62249|RS16_HUMAN 40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2 Back     alignment and function description
>sp|Q3T0X6|RS16_BOVIN 40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3 Back     alignment and function description
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1 Back     alignment and function description
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
307209216148 40S ribosomal protein S16 [Harpegnathos 0.587 0.885 0.619 1e-37
110756571148 PREDICTED: 40S ribosomal protein S16 [Ap 0.587 0.885 0.619 2e-37
332016224182 40S ribosomal protein S16 [Acromyrmex ec 0.587 0.719 0.612 5e-37
307173030148 40S ribosomal protein S16 [Camponotus fl 0.587 0.885 0.612 6e-37
383852748148 PREDICTED: 40S ribosomal protein S16-lik 0.587 0.885 0.612 7e-37
322784871157 hypothetical protein SINV_04941 [Solenop 0.587 0.834 0.622 2e-36
121511948148 40S ribosomal protein S16 [Xenopsylla ch 0.587 0.885 0.612 2e-36
263173507153 40S ribosomal protein S16 [Cimex lectula 0.573 0.836 0.589 9e-36
194754874148 GF11903 [Drosophila ananassae] gi|190621 0.587 0.885 0.612 3e-35
345495365148 PREDICTED: 40S ribosomal protein S16-lik 0.524 0.790 0.653 7e-35
>gi|307209216|gb|EFN86323.1| 40S ribosomal protein S16 [Harpegnathos saltator] gi|307209245|gb|EFN86352.1| 40S ribosomal protein S16 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 103/142 (72%), Gaps = 11/142 (7%)

Query: 66  LQYKLQEPI----LLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121
           +Q K +EPI    +    KSATAVAYCK G+GNLRV+GRPLE++EP++LQYKLQEPILLL
Sbjct: 1   MQKKQKEPIHSVQVFGRKKSATAVAYCKRGRGNLRVNGRPLELVEPRVLQYKLQEPILLL 60

Query: 122 GKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLT 181
           GK+KF+GVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQK          + +L++   T
Sbjct: 61  GKEKFSGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKYVDEASKKEVKDILIQYDRT 120

Query: 182 LLGKD-------KFAGVDIRVR 196
           LL  D       KF G   R R
Sbjct: 121 LLVADPRRCEPKKFGGPGARAR 142

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|110756571|ref|XP_001122174.1| PREDICTED: 40S ribosomal protein S16 [Apis mellifera] gi|340713706|ref|XP_003395379.1| PREDICTED: 40S ribosomal protein S16-like [Bombus terrestris] gi|350409543|ref|XP_003488773.1| PREDICTED: 40S ribosomal protein S16-like [Bombus impatiens] gi|380025003|ref|XP_003696272.1| PREDICTED: 40S ribosomal protein S16-like [Apis florea] Back     alignment and taxonomy information
>gi|332016224|gb|EGI57137.1| 40S ribosomal protein S16 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307173030|gb|EFN64172.1| 40S ribosomal protein S16 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383852748|ref|XP_003701887.1| PREDICTED: 40S ribosomal protein S16-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322784871|gb|EFZ11651.1| hypothetical protein SINV_04941 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|121511948|gb|ABM55425.1| 40S ribosomal protein S16 [Xenopsylla cheopis] Back     alignment and taxonomy information
>gi|263173507|gb|ACY69957.1| 40S ribosomal protein S16 [Cimex lectularius] Back     alignment and taxonomy information
>gi|194754874|ref|XP_001959719.1| GF11903 [Drosophila ananassae] gi|190621017|gb|EDV36541.1| GF11903 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|345495365|ref|XP_003427491.1| PREDICTED: 40S ribosomal protein S16-like isoform 1 [Nasonia vitripennis] gi|345495367|ref|XP_003427492.1| PREDICTED: 40S ribosomal protein S16-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
FB|FBgn0034743148 RpS16 "Ribosomal protein S16" 0.587 0.885 0.605 8.3e-35
UNIPROTKB|E1BAT6145 E1BAT6 "Uncharacterized protei 0.520 0.8 0.596 1.4e-30
UNIPROTKB|K7GSD9145 K7GSD9 "Uncharacterized protei 0.533 0.820 0.611 6.7e-33
UNIPROTKB|F1NBU1172 RPS16 "Uncharacterized protein 0.524 0.680 0.620 1.1e-32
UNIPROTKB|Q3T0X6146 RPS16 "40S ribosomal protein S 0.524 0.801 0.612 2.3e-32
UNIPROTKB|F1PKR6160 RPS16 "Uncharacterized protein 0.524 0.731 0.612 2.3e-32
UNIPROTKB|P62249146 RPS16 "40S ribosomal protein S 0.524 0.801 0.612 2.3e-32
UNIPROTKB|Q29201146 RPS16 "40S ribosomal protein S 0.524 0.801 0.612 2.3e-32
MGI|MGI:98118146 Rps16 "ribosomal protein S16" 0.524 0.801 0.612 2.3e-32
RGD|621031146 Rps16 "ribosomal protein S16" 0.524 0.801 0.612 2.3e-32
FB|FBgn0034743 RpS16 "Ribosomal protein S16" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 86/142 (60%), Positives = 101/142 (71%)

Query:    66 LQYKLQEPIL---LLGTK-SATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLL 121
             +Q K +EP+    + G K +ATAVAYCK G G L+V+GRPLE IEPK+LQYKLQEP+LLL
Sbjct:     1 MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLL 60

Query:   122 GKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLT 181
             GK+KFAGVDIRVRV+GGGHVAQIYAIRQAISKALVA+YQK          + +LV+   T
Sbjct:    61 GKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRT 120

Query:   182 LLGKD-------KFAGVDIRVR 196
             LL  D       KF G   R R
Sbjct:   121 LLVGDPRRCEPKKFGGPGARAR 142
GO:0006412 "translation" evidence=ISS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA
GO:0005811 "lipid particle" evidence=IDA
GO:0005840 "ribosome" evidence=IDA
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
UNIPROTKB|E1BAT6 E1BAT6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSD9 K7GSD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBU1 RPS16 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0X6 RPS16 "40S ribosomal protein S16" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKR6 RPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62249 RPS16 "40S ribosomal protein S16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q29201 RPS16 "40S ribosomal protein S16" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:98118 Rps16 "ribosomal protein S16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621031 Rps16 "ribosomal protein S16" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3T0X6RS16_BOVINNo assigned EC number0.61290.52460.8013yesN/A
P14131RS16_MOUSENo assigned EC number0.61290.52460.8013yesN/A
Q9W237RS16_DROMENo assigned EC number0.59850.58740.8851yesN/A
O60144RS16_SCHPONo assigned EC number0.55280.52010.8285yesN/A
P62249RS16_HUMANNo assigned EC number0.61290.52460.8013yesN/A
Q22054RS16_CAEELNo assigned EC number0.68290.31390.4861yesN/A
Q29201RS16_PIGNo assigned EC number0.61290.52460.8013yesN/A
Q6FR56RS16_CANGANo assigned EC number0.50800.52460.8181yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
PTZ00086147 PTZ00086, PTZ00086, 40S ribosomal protein S16; Pro 6e-39
PLN00210141 PLN00210, PLN00210, 40S ribosomal protein S16; Pro 2e-38
pfam00380121 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 4e-26
PRK00474134 PRK00474, rps9p, 30S ribosomal protein S9P; Review 1e-24
COG0103130 COG0103, RpsI, Ribosomal protein S9 [Translation, 2e-21
PLN00210141 PLN00210, PLN00210, 40S ribosomal protein S16; Pro 7e-20
PTZ00086147 PTZ00086, PTZ00086, 40S ribosomal protein S16; Pro 2e-19
TIGR03627130 TIGR03627, arch_S9P, archaeal ribosomal protein S9 2e-19
PRK00132130 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed 9e-12
pfam00380121 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 1e-11
COG0103130 COG0103, RpsI, Ribosomal protein S9 [Translation, 1e-08
PRK00474134 PRK00474, rps9p, 30S ribosomal protein S9P; Review 4e-08
PRK00132130 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed 9e-06
TIGR03627130 TIGR03627, arch_S9P, archaeal ribosomal protein S9 3e-05
CHL00079130 CHL00079, rps9, ribosomal protein S9 7e-05
>gnl|CDD|185437 PTZ00086, PTZ00086, 40S ribosomal protein S16; Provisional Back     alignment and domain information 
 Score =  131 bits (331), Expect = 6e-39
 Identities = 51/82 (62%), Positives = 67/82 (81%)

Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           K+A AVA   +GKG +RV+G PL++I P+ L+ K+ EP+LL+GK++F+ +DIRVRV GGG
Sbjct: 18  KTAVAVALVTKGKGLIRVNGVPLDLINPETLRAKVFEPLLLVGKERFSRLDIRVRVRGGG 77

Query: 140 HVAQIYAIRQAISKALVAYYQK 161
            VAQ YAIRQAI+K LVAYYQK
Sbjct: 78  QVAQAYAIRQAIAKGLVAYYQK 99

Length = 147
>gnl|CDD|177799 PLN00210, PLN00210, 40S ribosomal protein S16; Provisional Back     alignment and domain information
>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 Back     alignment and domain information
>gnl|CDD|179041 PRK00474, rps9p, 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177799 PLN00210, PLN00210, 40S ribosomal protein S16; Provisional Back     alignment and domain information
>gnl|CDD|185437 PTZ00086, PTZ00086, 40S ribosomal protein S16; Provisional Back     alignment and domain information
>gnl|CDD|132666 TIGR03627, arch_S9P, archaeal ribosomal protein S9P Back     alignment and domain information
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>gnl|CDD|201193 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16 Back     alignment and domain information
>gnl|CDD|223181 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|179041 PRK00474, rps9p, 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>gnl|CDD|178888 PRK00132, rpsI, 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>gnl|CDD|132666 TIGR03627, arch_S9P, archaeal ribosomal protein S9P Back     alignment and domain information
>gnl|CDD|214357 CHL00079, rps9, ribosomal protein S9 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
PLN00210141 40S ribosomal protein S16; Provisional 100.0
COG0103130 RpsI Ribosomal protein S9 [Translation, ribosomal 100.0
PTZ00086147 40S ribosomal protein S16; Provisional 100.0
CHL00079130 rps9 ribosomal protein S9 100.0
PRK00132130 rpsI 30S ribosomal protein S9; Reviewed 100.0
PRK00474134 rps9p 30S ribosomal protein S9P; Reviewed 100.0
TIGR03627130 arch_S9P archaeal ribosomal protein S9P. This mode 100.0
PF00380121 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: 100.0
KOG1697|consensus275 100.0
KOG1753|consensus145 100.0
CHL00079130 rps9 ribosomal protein S9 99.36
COG0103130 RpsI Ribosomal protein S9 [Translation, ribosomal 99.23
PF00380121 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: 99.2
PRK00132130 rpsI 30S ribosomal protein S9; Reviewed 99.16
PRK00474134 rps9p 30S ribosomal protein S9P; Reviewed 98.38
PLN00210141 40S ribosomal protein S16; Provisional 98.36
KOG1697|consensus275 98.23
KOG1753|consensus145 98.22
PTZ00086147 40S ribosomal protein S16; Provisional 98.18
TIGR03627130 arch_S9P archaeal ribosomal protein S9P. This mode 98.16
COG4988559 CydD ABC-type transport system involved in cytochr 87.9
KOG0058|consensus716 82.29
>PLN00210 40S ribosomal protein S16; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.4e-46  Score=305.23  Aligned_cols=133  Identities=51%  Similarity=0.886  Sum_probs=116.9

Q ss_pred             cceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccccc
Q psy8077          26 IKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMI  105 (223)
Q Consensus        26 ~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Y  105 (223)
                      +++++++||||||+||||++||+|.|+|||+|+++||                                           
T Consensus         2 ~~~~~~~GrRKta~Arv~~~~G~G~i~INg~~~~~y~-------------------------------------------   38 (141)
T PLN00210          2 TESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVQ-------------------------------------------   38 (141)
T ss_pred             CcceeeeccCCCceEEEEEECCCceEEECCCcHHHHC-------------------------------------------
Confidence            4679999999999999999999999888886666554                                           


Q ss_pred             CcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccc
Q psy8077         106 EPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGK  185 (223)
Q Consensus       106 f~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~r  185 (223)
                       ++.+++++++||.+++.+.+++|||+|+|+|||.||||+||||||||||+.|++++.++..+..||+.|+.||++||+|
T Consensus        39 -~~~~r~~i~~Pl~~~~~~~~~~~Di~~~V~GGG~sgQa~Air~aiaraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtr  117 (141)
T PLN00210         39 -PEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVA  117 (141)
T ss_pred             -CHHHHHHHHHHHHHhCccccCceeEEEEEEcCCHhHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHhccCCCccC
Confidence             4456677788888888655789999999999999999999999999999999987776666778999999999999999


Q ss_pred             c-------cCCCcceeEEEecCcc
Q psy8077         186 D-------KFAGVDIRVRVNGGGH  202 (223)
Q Consensus       186 D-------K~G~~kARk~~Q~sKR  202 (223)
                      |       |||++||||+||||||
T Consensus       118 D~R~~ERKK~G~~kARk~~Q~Skr  141 (141)
T PLN00210        118 DPRRCEPKKFGGRGARARFQKSYR  141 (141)
T ss_pred             CchhhccCcCCccccccccccccC
Confidence            8       9999999999999998

>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00086 40S ribosomal protein S16; Provisional Back     alignment and domain information
>CHL00079 rps9 ribosomal protein S9 Back     alignment and domain information
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>TIGR03627 arch_S9P archaeal ribosomal protein S9P Back     alignment and domain information
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1697|consensus Back     alignment and domain information
>KOG1753|consensus Back     alignment and domain information
>CHL00079 rps9 ribosomal protein S9 Back     alignment and domain information
>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00380 Ribosomal_S9: Ribosomal protein S9/S16; InterPro: IPR000754 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed Back     alignment and domain information
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed Back     alignment and domain information
>PLN00210 40S ribosomal protein S16; Provisional Back     alignment and domain information
>KOG1697|consensus Back     alignment and domain information
>KOG1753|consensus Back     alignment and domain information
>PTZ00086 40S ribosomal protein S16; Provisional Back     alignment and domain information
>TIGR03627 arch_S9P archaeal ribosomal protein S9P Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0058|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2zkq_i146 Structure Of A Mammalian Ribosomal 40s Subunit With 9e-35
2zkq_i146 Structure Of A Mammalian Ribosomal 40s Subunit With 3e-16
3izb_I143 Localization Of The Small Subunit Ribosomal Protein 2e-27
3izb_I143 Localization Of The Small Subunit Ribosomal Protein 3e-13
1s1h_I142 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-27
1s1h_I142 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-13
3jyv_I138 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-27
3jyv_I138 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-13
3iz6_I149 Localization Of The Small Subunit Ribosomal Protein 8e-25
3iz6_I149 Localization Of The Small Subunit Ribosomal Protein 9e-11
2xzm_I145 Crystal Structure Of The Eukaryotic 40s Ribosomal S 4e-23
2xzm_I145 Crystal Structure Of The Eukaryotic 40s Ribosomal S 7e-10
3j20_K135 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-16
3zey_K149 High-resolution Cryo-electron Microscopy Structure 4e-13
3zey_K149 High-resolution Cryo-electron Microscopy Structure 2e-06
>pdb|2ZKQ|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 146 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 7/124 (5%)
Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           K+ATAVA+CK G G ++V+GRPLEMIEP+ LQYKL EP+LLLGK++FAGVDIRVRV GGG
Sbjct: 17  KTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGG 76
Query: 140 HVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKD-------KFAGVD 192
           HVAQIYAIRQ+ISKALVAYYQK          + +L++   TLL  D       KF G  
Sbjct: 77  HVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPG 136
Query: 193 IRVR 196
            R R
Sbjct: 137 ARAR 140
>pdb|2ZKQ|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 146 Back     alignment and structure
>pdb|3IZB|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 143 Back     alignment and structure
>pdb|3IZB|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 143 Back     alignment and structure
>pdb|1S1H|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 142 Back     alignment and structure
>pdb|1S1H|I Chain I, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 142 Back     alignment and structure
>pdb|3JYV|I Chain I, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 138 Back     alignment and structure
>pdb|3JYV|I Chain I, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 138 Back     alignment and structure
>pdb|3IZ6|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 149 Back     alignment and structure
>pdb|3IZ6|I Chain I, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 149 Back     alignment and structure
>pdb|2XZM|I Chain I, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 145 Back     alignment and structure
>pdb|2XZM|I Chain I, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 145 Back     alignment and structure
>pdb|3J20|K Chain K, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 135 Back     alignment and structure
>pdb|3ZEY|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 149 Back     alignment and structure
>pdb|3ZEY|K Chain K, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 6e-34
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 5e-16
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 3e-33
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 9e-16
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 1e-32
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 7e-15
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 1e-32
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 2e-15
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 8e-13
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 3e-06
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 1e-12
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 3e-06
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 2e-12
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 2e-06
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Length = 145 Back     alignment and structure
 Score =  117 bits (296), Expect = 6e-34
 Identities = 52/107 (48%), Positives = 75/107 (70%)

Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           K+A AVA  + GKG L+V+G P++MI P++LQ K+ EPILLLG+ KFA +DIR+RV G G
Sbjct: 16  KNAVAVASVRPGKGLLKVNGSPIDMINPQILQAKIYEPILLLGQQKFANLDIRIRVRGSG 75

Query: 140 HVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKD 186
           + +Q+YAIRQA+SK +VAY+ K          ++ L++   +LL  D
Sbjct: 76  YTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVAD 122
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Length = 145 Back     alignment and structure
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Length = 143 Back     alignment and structure
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Length = 143 Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 146 Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 146 Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 149 Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 149 Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Length = 128 Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Length = 128 Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 197 Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 100.0
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 100.0
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 100.0
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 100.0
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 100.0
3j20_K135 30S ribosomal protein S9P; archaea, archaeal, KINK 100.0
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 100.0
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 100.0
2vqe_I128 30S ribosomal protein S9, 30S ribosomal protein S6 99.35
3r8n_I127 30S ribosomal protein S9; protein biosynthesis, RN 99.34
2xzm_I145 RPS16E; ribosome, translation; 3.93A {Tetrahymena 99.33
2zkq_i146 40S ribosomal protein S16E; protein-RNA complex, 4 99.32
3bbn_I197 Ribosomal protein S9; small ribosomal subunit, spi 99.3
3u5c_Q143 RP61R, 40S ribosomal protein S16-A; translation, r 98.61
3j20_K135 30S ribosomal protein S9P; archaea, archaeal, KINK 98.45
3iz6_I149 40S ribosomal protein S16 (S9P); eukaryotic riboso 92.56
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Back     alignment and structure
Probab=100.00  E-value=2.7e-48  Score=316.87  Aligned_cols=133  Identities=51%  Similarity=0.785  Sum_probs=117.5

Q ss_pred             cceEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCcccccc
Q psy8077          26 IKSVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMI  105 (223)
Q Consensus        26 ~~~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Y  105 (223)
                      .++++++||||||+|||||+||+|+|+|||+|+++|||                                          
T Consensus         4 ~~~v~~~GrRKtAvArv~l~~G~G~i~VNg~~l~~y~~------------------------------------------   41 (143)
T 3u5c_Q            4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEP------------------------------------------   41 (143)
T ss_dssp             CCEEEEEECSTTCEEEEEEEECSCCEEETTEETTTCSS------------------------------------------
T ss_pred             cceEEEeccCcceEEEEEEEeCceEEEECCCcHHHHCh------------------------------------------
Confidence            47899999999999999999999999888877666654                                          


Q ss_pred             CcHHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccc
Q psy8077         106 EPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGK  185 (223)
Q Consensus       106 f~~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~r  185 (223)
                        +.+++++++||.+++.+.+++|||+|+|+|||+||||+||||||||||++|+++|.|+..+.+||+.|+.||++||||
T Consensus        42 --~~~r~~v~~Pl~l~~~~~~~~~Di~v~V~GGG~sgQA~AiR~aIArAL~~~~~~~vd~~~r~~LK~~l~~yD~glLtr  119 (143)
T 3u5c_Q           42 --EILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIA  119 (143)
T ss_dssp             --CSTHHHHHHHHHHTCSTTSTTEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSTTSC
T ss_pred             --HHHHHHHHHHHHHHhhhccCceeEEEEEECCCEecHHhHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCCCcC
Confidence              345667778888888766799999999999999999999999999999999877776666778998888899899888


Q ss_pred             c-------cCCCcceeEEEecCcc
Q psy8077         186 D-------KFAGVDIRVRVNGGGH  202 (223)
Q Consensus       186 D-------K~G~~kARk~~Q~sKR  202 (223)
                      |       |||++|||++||||||
T Consensus       120 D~R~~ErKK~G~~kARk~~Q~SkR  143 (143)
T 3u5c_Q          120 DSRRPEPKKFGGKGARSRFQKSYR  143 (143)
T ss_dssp             CCCCCCCCCSSSSSSSCCCCCCCC
T ss_pred             CCcccccCCCCCcccccccccccC
Confidence            8       9999999999999998
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Back     alignment and structure
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ... Back     alignment and structure
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I Back     alignment and structure
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I* Back     alignment and structure
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3iz6_I 40S ribosomal protein S16 (S9P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d2vqei1127 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus t 7e-16
d2vqei1127 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus t 1e-06
d2gy9i1126 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherich 6e-15
d2gy9i1126 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherich 2e-06
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]

 Score = 69.2 bits (169), Expect = 7e-16
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 80  KSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGKDKFAGVDIRVRVNGGG 139
           K A A  + + G G + V+G+        L++       L    D     D  + V GGG
Sbjct: 10  KEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLR-AVDALGRFDAYITVRGGG 68

Query: 140 HVAQIYAIRQAISKALVAYYQKCKQA 165
              QI AI+  I++ALV Y    +  
Sbjct: 69  KSGQIDAIKLGIARALVQYNPDYRAK 94
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126 Back     information, alignment and structure
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d2gy9i1126 Ribosomal protein S9 {Escherichia coli [TaxId: 562 100.0
d2vqei1127 Ribosomal protein S9 {Thermus thermophilus [TaxId: 100.0
d2vqei1127 Ribosomal protein S9 {Thermus thermophilus [TaxId: 99.25
d2gy9i1126 Ribosomal protein S9 {Escherichia coli [TaxId: 562 99.2
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-46  Score=295.97  Aligned_cols=126  Identities=24%  Similarity=0.332  Sum_probs=113.6

Q ss_pred             eEEeeceeeeEEEEEEEEcCceeEEEcCccccccCcHHHHHHHhhhhhhhcccccceeEEEecCcceEEEcCccccccCc
Q psy8077          28 SVQVFGRKKSATAVAYCKEGKGNLRVDGRPLEMIEPKLLQYKLQEPILLLGTKSATAVAYCKEGKGNLRVDGRPLEMIEP  107 (223)
Q Consensus        28 ~~~~tGrRKtAvArv~l~~G~G~i~VNg~p~e~yf~~~~r~~i~~PL~ltGrKta~A~v~~v~G~G~I~VNg~pl~~Yf~  107 (223)
                      ++|++||||||+|||||+||+|+|+|||+|+++|||+                                           
T Consensus         1 q~y~tGrRKtaiArv~l~~G~G~I~IN~~~~~~yf~~-------------------------------------------   37 (126)
T d2gy9i1           1 QYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGR-------------------------------------------   37 (126)
T ss_dssp             CEEECCEETTEEEEEEEEESSSCEEETTEEHHHHTTT-------------------------------------------
T ss_pred             CcccccccccEEEEEEEEecCcEEEECchhHhhhcch-------------------------------------------
Confidence            4689999999999999999999998888777777653                                           


Q ss_pred             HHHHHHHHhHHHHhCCCCCceecEEEEecCCCcccHHHHHHHHHHHHHHHhchhhhhhchhhhhhhhhhhcccccccccc
Q psy8077         108 KLLQYKLQEPILLLGKDKFAGVDIRVRVNGGGHVAQIYAIRQAISKALVAYYQKCKQATGLLGTEKMLVKSTLTLLGKDK  187 (223)
Q Consensus       108 ~~~r~~v~~PL~~~~~~~~~~~DI~i~V~GGG~sgQA~AIr~aIARaL~~~~~~~~~~~~~~~lk~~l~~~D~~lL~rDK  187 (223)
                      ..+++.+++||.+++.  .++|||.|+|+|||+||||+||||||||||+.++|+++++|++.    .|++.|++..||+|
T Consensus        38 ~~~~~~~~~pl~~~~~--~~~~di~v~V~GGG~sgQa~Air~aIaRaLv~~~~~~r~~lk~~----glLt~D~R~~ErKK  111 (126)
T d2gy9i1          38 ETARMVVRQPLELVDM--VEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKA----GFVTRDARQVERKK  111 (126)
T ss_dssp             CGGGGGGGHHHHHTTC--GGGEEEEEEEESSCHHHHHHHHHHHHHHHHHHHCGGGHHHHTTT----TTTSCCCCCCCCCC
T ss_pred             HhHHHHHHhHHHhhcc--ccceeEEEEEecCCchhHHHHHHHHHHHHHHHhCHHHHHHHHHC----cCcccCccccccCC
Confidence            2345677889999988  49999999999999999999999999999999999999988775    58999999999999


Q ss_pred             CCCcceeEEEecCcc
Q psy8077         188 FAGVDIRVRVNGGGH  202 (223)
Q Consensus       188 ~G~~kARk~~Q~sKR  202 (223)
                      ||++|||++||||||
T Consensus       112 ~G~~kARk~~Q~skR  126 (126)
T d2gy9i1         112 VGLRKARRRPQFSKR  126 (126)
T ss_dssp             SSSSSSSSCCCCSCC
T ss_pred             CCCcccccCccccCC
Confidence            999999999999998
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure