Psyllid ID: psy810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MELTPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTSRTF
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHcccccEEEcEEEEEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEEEEccccccccccccccccccccccEEEEEcccccccccccEEEEEcccccHHHHHHHHHHHcccEEEEEEccccccccccccEEEEccEEEEEccEEEEccccEEEccEEEEEccccccEEEcccccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccHHHHHHHHEEEEccEEEEEEEccEEEEEEEccccEEEEEEEEEEEEEcccccccccccccccccccccEEEcccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccEEEEccccEEEEcccEEEEEEEEEEccEEEEEEEccccccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
meltpsclpsvlttynseALQPIRKlresqptnfisiafipcieikfgsswaeiekfsvptkclhFANEEITLHYNLLqslpsshnsvpnipsyegadlfrglqmhshdyrvpdpfrdqnvllvgfgpsgvDIAMDIEKVAKNVFLSHHISVAFKhqigdsvvqkpdikrllqdsvvfqddtshpfdsiiyctgaykySYKLTFLATFSISmamstpdgpnptsrtf
Flexible Loop (DISEMBL)
meltpsclpsvlttynseALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMamstpdgpnptsrtf
Low Complexity Region (SEG)
MELTPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTSRTF
Disordered region (IsUnstruct)
**********VLTTY***************PTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSL*********IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSIS****************
Disordered Region (DISOPRED)
*ELTPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPN******
Disordered Region (DISEMBL)
MELTPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS************
Disordered Region (DISPRO)
****PSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTSRTF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELTPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTSRTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q8MP06	456	Senecionine N-oxygenase O	N/A	N/A	0.555	0.276	0.368	6e-20
Q9FLK4	461	Flavin-containing monooxy	yes	N/A	0.533	0.262	0.397	8e-17
Q9FF12	460	Flavin-containing monooxy	no	N/A	0.546	0.269	0.413	9e-17
Q9FWW6	468	Flavin-containing monooxy	no	N/A	0.537	0.260	0.365	4e-15
Q94BV5	452	Flavin-containing monooxy	no	N/A	0.475	0.238	0.368	8e-15
Q94K43	457	Flavin-containing monooxy	no	N/A	0.537	0.266	0.369	3e-14
Q93Y23	461	Flavin-containing monooxy	no	N/A	0.594	0.292	0.346	2e-13
Q9FWW3	470	Flavin-containing monooxy	no	N/A	0.537	0.259	0.377	2e-13
Q9SXE1	462	Flavin-containing monooxy	no	N/A	0.537	0.264	0.361	2e-13
Q9SXD5	450	Flavin-containing monooxy	no	N/A	0.594	0.3	0.352	4e-13

>sp|Q8MP06|SNO1_TYRJA Senecionine N-oxygenase OS=Tyria jacobaeae GN=sno1 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 7/133 (5%)

Query: 81  LPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140
           + S   S P IP  +G + ++G  MHSHDY+  + FR Q VL++G GPSG+D+ M +  +
Sbjct: 171 VASGEFSTPKIPHIKGQEEYKGKTMHSHDYKEAESFRGQRVLVIGAGPSGLDVVMQLSNI 230

Query: 141 AKNVFLSHHISVAF----KHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAY 196
              +  S HI  ++    +     + + KP++K    +  VF+DDT   FD +IYCTG Y
Sbjct: 231 TSKLVHSQHILKSWHIFNQPDFPGNFISKPNVKHFTANGAVFEDDTVEEFDMVIYCTGFY 290

Query: 197 KYSYKLTFLATFS 209
              Y   FL+T S
Sbjct: 291 ---YNHPFLSTLS 300

NADPH-dependent monooxygenase that detoxifies senecionine and similar plant alkaloids that are ingested by the larvae. Is active towards a narrow range of related substrates with highest activity towards senecionine, followed by seneciphylline, retrorsine, monocrotaline, senecivernine, axillarine and axillaridine.
Tyria jacobaeae (taxid: 179666)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 0EC: 1

>sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis thaliana GN=At5g61290 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 15/136 (11%)

Query: 81  LPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140
           + S H S P +P+ +G DL++  Q+HSH YRVP+PF D+ V++VG   SG DI++++ +V
Sbjct: 176 VASGHYSYPRLPTIKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEV 235

Query: 141 AKNVFLSHH--------ISVAFKHQIGDSVVQKPDIKRLLQDS-VVFQDDTSHPFDSIIY 191
           AK V LS            V  KHQ   ++   P I+ L +D  V+F+D +    D+I+Y
Sbjct: 236 AKEVHLSTKSLDIPPGLSKVIEKHQ---NLHLHPQIESLEEDGRVIFEDGSCIVADTILY 292

Query: 192 CTGAYKYSYKLTFLAT 207
           CTG   Y YK  FL +
Sbjct: 293 CTG---YEYKFPFLES 305

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 9/133 (6%)

Query: 81  LPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140
           + + H S P +PS +G D ++  Q+HSH YRVPDPFR++ V++VG   SG DI+M++ +V
Sbjct: 178 VATGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEV 237

Query: 141 AKNVFLSHH---ISVAFKHQIGD--SVVQKPDIKRLLQDS-VVFQDDTSHPFDSIIYCTG 194
           AK V LS     IS      I    +++  P I+ L  D  V+F D +    D+I+YCTG
Sbjct: 238 AKEVHLSAKTLDISSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTG 297

Query: 195 AYKYSYKLTFLAT 207
              YSYK  FL +
Sbjct: 298 ---YSYKFPFLES 307

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW6|GSXL1_ARATH Flavin-containing monooxygenase FMO GS-OX-like 1 OS=Arabidopsis thaliana GN=At1g12160 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 4/126 (3%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P +    G + + G Q+HSH+YR+PDPF+D+ V+++G   SG DI+ DI  +AK
Sbjct: 169 NGHFTEPRLAHIPGIESWPGKQIHSHNYRIPDPFKDEVVIVIGSQASGNDISTDIATIAK 228

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKYSYK 201
            V +S  +  +  +   D++   P I R  +D SVVF++      D+I++CTG   Y Y 
Sbjct: 229 EVHISSKMVASDSYGCYDNLRIHPTIYRAREDGSVVFRNGKVVFADAIVHCTG---YKYH 285

Query: 202 LTFLAT 207
             FL T
Sbjct: 286 FPFLKT 291

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94BV5|GSXL4_ARATH Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 25/133 (18%)

Query: 85  HNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
           H  +P I S+ G       +MHSH+YR+P+PFRDQ V+L+G   S  DI+ DI +VAK V
Sbjct: 183 HAEIPGISSWPGK------EMHSHNYRIPEPFRDQVVVLIGNSASADDISRDIARVAKEV 236

Query: 145 FLSHHISVAFKHQIGDSVVQKPDIKRLL----------QDSVVFQDDTSHPFDSIIYCTG 194
                  VA +    D+ +++P    L             SVVFQ+  +   D I++CTG
Sbjct: 237 H------VACRSNAADTYIERPGYSNLWMHSMIESVHEDGSVVFQNGKTISVDVIMHCTG 290

Query: 195 AYKYSYKLTFLAT 207
              Y Y   FL T
Sbjct: 291 ---YKYHFPFLET 300

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q94K43|GSOX2_ARATH Flavin-containing monooxygenase FMO GS-OX2 OS=Arabidopsis thaliana GN=FMOGS-OX2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 8/130 (6%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           S H + PN+    G   + G Q+HSH+YRVP PF ++ V+++G   SG DI+ DI KVAK
Sbjct: 169 SGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAKVAK 228

Query: 143 NVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
            V ++   S    ++      +++    +I    +D S+VF++      DSI+YCTG   
Sbjct: 229 EVHIASRASEFDTYEKLPVPRNNLWIHSEIDTAYEDGSIVFKNGKVVYADSIVYCTG--- 285

Query: 198 YSYKLTFLAT 207
           Y Y+ TFL T
Sbjct: 286 YKYRFTFLET 295

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q93Y23|GSOX4_ARATH Flavin-containing monooxygenase FMO GS-OX4 OS=Arabidopsis thaliana GN=FMOGS-OX4 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 12/147 (8%)

Query: 66  FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVG 125
           F+N+EI   Y+ +  +   H + PNI    G + + G Q HSH YRVPDPF+D+ V+++G
Sbjct: 156 FSNDEI---YDAV-VMCCGHFAEPNIAQIPGIESWPGRQTHSHSYRVPDPFKDEVVVVIG 211

Query: 126 FGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQD 180
              SG DI+ DI KVAK V ++   S +   +      +++    +I    +D ++VF++
Sbjct: 212 NFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLWMHSEIDTAHEDGTIVFKN 271

Query: 181 DTSHPFDSIIYCTGAYKYSYKLTFLAT 207
                 D+I++CTG   Y Y   FL T
Sbjct: 272 GKVVHADTIVHCTG---YKYYFPFLET 295

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9FWW3|GSXL6_ARATH Flavin-containing monooxygenase FMO GS-OX-like 6 OS=Arabidopsis thaliana GN=At1g12130 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P +    G + + G Q+HSH+YRV DPF+ Q V+++G+  SG DI+ DI  +AK
Sbjct: 172 NGHFTEPRLAHIPGIESWPGKQIHSHNYRVSDPFKGQVVIVIGYQSSGSDISRDIAILAK 231

Query: 143 NVFLSHHI-SVAFKHQIGDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKYSY 200
            V ++    + A +  I  ++   P I R+ +D SVVFQD      D+I++CTG   Y Y
Sbjct: 232 EVHIAAKSDAYAKESSIYSNLHFHPTIDRVYEDGSVVFQDGKLIFADAIVHCTG---YKY 288

Query: 201 KLTFLAT 207
              FL T
Sbjct: 289 CFPFLET 295

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis thaliana GN=FMOGS-OX3 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 8/130 (6%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + PNI    G   + G Q+HSH+YRVPDPF ++ V+++G   SG DI+ DI KVAK
Sbjct: 170 NGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAK 229

Query: 143 NVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
            V ++        ++      +++    +I    +D S+VF++      DSI+YCTG   
Sbjct: 230 EVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTG--- 286

Query: 198 YSYKLTFLAT 207
           Y Y   FL T
Sbjct: 287 YKYNFPFLET 296

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. Prefers probably short-chain methylthioalkyl glucosinolates in cv. Landsberg erecta.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 7/142 (4%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H   P +    G   + G +MHSH+YR+P+PFRD+ V+L+G   S  DI+ DI +VAK
Sbjct: 173 NGHYVEPRLAQIPGISSWPGKEMHSHNYRIPEPFRDKVVVLIGNSSSAEDISRDIARVAK 232

Query: 143 NVFLSHHISVA--FKHQIG-DSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKY 198
            V ++   + A  F  Q G +++     I+ + +D SVV+Q+  +   D I++CTG   Y
Sbjct: 233 EVHVACRSNPADTFIKQTGYNNLWTHSMIESVHEDGSVVYQNGKTISVDIIMHCTG---Y 289

Query: 199 SYKLTFLATFSISMAMSTPDGP 220
            Y   FL T  I        GP
Sbjct: 290 KYHFPFLDTNGIVTVDDNRVGP 311

Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
66500583	419	PREDICTED: flavin-containing monooxygena	0.515	0.279	0.508	2e-27
380027061	419	PREDICTED: dimethylaniline monooxygenase	0.515	0.279	0.5	5e-27
383864815	419	PREDICTED: flavin-containing monooxygena	0.515	0.279	0.491	3e-26
195474133	428	GE24665 [Drosophila yakuba] gi|194175447	0.515	0.273	0.474	7e-26
195124664	427	GI18387 [Drosophila mojavensis] gi|19391	0.515	0.274	0.466	3e-25
156537946	423	PREDICTED: flavin-containing monooxygena	0.515	0.276	0.491	3e-25
195331855	429	GM20867 [Drosophila sechellia] gi|194124	0.515	0.272	0.457	7e-25
19921694	429	Flavin-containing monooxygenase 2 [Droso	0.515	0.272	0.466	8e-25
195429393	427	GK19621 [Drosophila willistoni] gi|19415	0.515	0.274	0.440	9e-25
16751750	429	flavin-containing monooxygenase FMO-2 [D	0.515	0.272	0.466	9e-25

>gi|66500583|ref|XP_394164.2| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Apis mellifera]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H   P+IP+ +G  +F+G Q+HSHDYRVPD F D+ V+++G GPSG+D+A++I K AK
Sbjct: 152 NGHYFEPSIPNLKGQQIFQGEQLHSHDYRVPDIFTDKTVVVLGAGPSGMDLALEISKKAK 211

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            + LSHH+         D+VVQKPDIK L +  V+F+DDT+   D+I YCTG YKYS+
Sbjct: 212 RIILSHHLKDPIGTVFPDNVVQKPDIKELTKHGVIFKDDTNESVDAIFYCTG-YKYSF 268

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027061|ref|XP_003697254.1| PREDICTED: dimethylaniline monooxygenase [N-oxide-forming] 2-like [Apis florea]

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 84/118 (71%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H   P+IP+ +G  +F+G Q+HSHDYRVPD F D+ ++++G GPSG+D+A++I K AK
Sbjct: 152 NGHYFEPSIPNLKGQQIFQGEQLHSHDYRVPDIFTDKTIVVLGAGPSGMDLALEISKKAK 211

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            V LSHH+         D+VVQKPD+K L +  V+F+DDT+   D+I YCTG YKYS+
Sbjct: 212 RVILSHHLKDPIGTVFPDNVVQKPDVKELTEHGVLFKDDTNESVDAIFYCTG-YKYSF 268

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383864815|ref|XP_003707873.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Megachile rotundata]

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H   P+ P+ +G ++++G QMHSHDYRVP+ F D+NV+++G GPSG+D+A+DI   AK
Sbjct: 152 NGHYFEPSFPNLKGQNVYQGKQMHSHDYRVPNTFLDKNVVVIGAGPSGMDLALDISGYAK 211

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            VFLSHH           +V QKPD++ L + +VVF+D TS P D + YCTG YKYS+
Sbjct: 212 RVFLSHHSRDPIGTVFPSNVTQKPDVRELTEQNVVFKDGTSEPVDIVFYCTG-YKYSF 268

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474133|ref|XP_002089346.1| GE24665 [Drosophila yakuba] gi|194175447|gb|EDW89058.1| GE24665 [Drosophila yakuba]

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P+IP  EG DLF G +MHSH YR  D F+D+ VL++G GPSG+DI   +   AK
Sbjct: 156 NGHYTEPDIPDVEGLDLFEGKKMHSHLYRKADKFKDERVLIIGAGPSGMDITNHVRVAAK 215

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            VFLSHH+S A       +V QKPD++R ++D  VF D ++  FD +++CTG YKY++
Sbjct: 216 QVFLSHHLSTAPNTAFMGNVTQKPDVQRFIKDGAVFTDGSTESFDHVMFCTG-YKYTF 272

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195124664|ref|XP_002006811.1| GI18387 [Drosophila mojavensis] gi|193911879|gb|EDW10746.1| GI18387 [Drosophila mojavensis]

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P++P+ EG DLF G Q+HSH YR  + F+DQ+VL++G GPSG+DIA  I K A+
Sbjct: 157 NGHYTEPDMPTIEGMDLFEGQQIHSHVYRKAEKFKDQSVLIIGAGPSGMDIANHIRKKAR 216

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
           +V+LSHH+  A       +V QKPD++R  +   +F+D +   FD ++YCTG YKYS+
Sbjct: 217 HVYLSHHLPTAPNTAFMGNVTQKPDVERFTKMGAIFKDGSEESFDHVVYCTG-YKYSF 273

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537946|ref|XP_001608165.1| PREDICTED: flavin-containing monooxygenase FMO GS-OX3-like [Nasonia vitripennis]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H   P++P+ +G +LF+G Q+HSHDYRVPD F D+ V++ G GPSG+D+A++I K AK
Sbjct: 149 NGHYFDPSLPALKGRELFKGQQLHSHDYRVPDTFADKRVVVFGAGPSGMDLALEISKKAK 208

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            V LSHH       +  D+VVQK D+  L ++S VFQD ++   D I YCTG YKYS+
Sbjct: 209 RVILSHHSKETILTKFPDNVVQKKDVVELKENSAVFQDGSAEDVDIIFYCTG-YKYSF 265

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331855|ref|XP_002032614.1| GM20867 [Drosophila sechellia] gi|194124584|gb|EDW46627.1| GM20867 [Drosophila sechellia]

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P++P  EG DLF G +MHSH YR  D F+D  VL++G GPSG+DI   + + AK
Sbjct: 156 NGHYTEPDLPEVEGLDLFEGKKMHSHLYRKADKFKDARVLIIGAGPSGMDITNHVREAAK 215

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            VFLSHH+S         +V QKPD++R  +D  VF D ++  FD +++CTG YKY++
Sbjct: 216 QVFLSHHLSTTPNTAFMGNVTQKPDVQRFTKDGAVFTDGSTESFDHVMFCTG-YKYTF 272

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921694|ref|NP_610217.1| Flavin-containing monooxygenase 2 [Drosophila melanogaster] gi|7302273|gb|AAF57364.1| Flavin-containing monooxygenase 2 [Drosophila melanogaster] gi|16182789|gb|AAL13578.1| GH12207p [Drosophila melanogaster] gi|220945058|gb|ACL85072.1| Fmo-2-PA [synthetic construct] gi|220954954|gb|ACL90020.1| Fmo-2-PA [synthetic construct]

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P++P  EG DLF G +MHSH YR  D F+D  VL++G GPSG+DI   +   AK
Sbjct: 156 NGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAGPSGMDITNHVRLAAK 215

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            VFLSHH+S         +V QKPD+KR  +D  VF D ++  FD +++CTG YKY++
Sbjct: 216 QVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAVFTDGSTESFDHVMFCTG-YKYTF 272

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429393|ref|XP_002062747.1| GK19621 [Drosophila willistoni] gi|194158832|gb|EDW73733.1| GK19621 [Drosophila willistoni]

 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P++P  EG DL+ G Q+HSH YR  D ++ +NVL++G GPSG+DIA  + K AK
Sbjct: 157 NGHYTEPDLPEIEGMDLYEGEQIHSHLYRKADKYKGENVLVIGAGPSGMDIANHVRKAAK 216

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
           +V+LSHH++         +V QKPD++R  ++  VF+D ++  FD +IYCTG Y+Y++
Sbjct: 217 HVYLSHHLAATPNTAFMGNVTQKPDVERFTRNGAVFKDGSTETFDHVIYCTG-YQYTF 273

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16751750|gb|AAL27708.1|AF432229_1 flavin-containing monooxygenase FMO-2 [Drosophila melanogaster]

 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + P++P  EG DLF G +MHSH YR  D F+D  VL++G GPSG+DI   +   AK
Sbjct: 156 NGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAGPSGMDITNHVRLAAK 215

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
            VFLSHH+S         +V QKPD+KR  +D  VF D ++  FD +++CTG YKY++
Sbjct: 216 QVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAVFTDGSTESFDHVMFCTG-YKYTF 272

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
FB|FBgn0033079	429	Fmo-2 "Flavin-containing monoo	0.515	0.272	0.466	9.4e-27
UNIPROTKB|Q8MP06	456	sno1 "Senecionine N-oxygenase"	0.546	0.271	0.374	1.8e-20
FB|FBgn0034943	416	Fmo-1 "Flavin-containing monoo	0.515	0.281	0.355	3.5e-19
TAIR|locus:2177813	460	AT5G07800 "AT5G07800" [Arabido	0.528	0.260	0.426	1.3e-17
TAIR|locus:2163193	461	AT5G61290 "AT5G61290" [Arabido	0.515	0.253	0.416	1.7e-17
TAIR|locus:2202038	468	AT1G12160 "AT1G12160" [Arabido	0.537	0.260	0.373	3.7e-16
TAIR|locus:2203901	461	FMO GS-OX4 "AT1G62570" [Arabid	0.594	0.292	0.367	1.3e-15
TAIR|locus:2201981	470	AT1G12130 "AT1G12130" [Arabido	0.537	0.259	0.385	2.8e-15
TAIR|locus:2203871	457	FMO GS-OX2 "AT1G62540" [Arabid	0.537	0.266	0.369	7.2e-15
TAIR|locus:2203891	462	FMO GS-OX3 "AT1G62560" [Arabid	0.537	0.264	0.376	9.5e-15

FB|FBgn0033079 Fmo-2 "Flavin-containing monooxygenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 55/118 (46%), Positives = 76/118 (64%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H + P++P  EG DLF G +MHSH YR  D F+D  VL++G GPSG+DI   +   AK
Sbjct:   156 NGHYTEPDLPEVEGLDLFEGNKMHSHLYRKADKFKDARVLIIGAGPSGMDITNHVRLAAK 215

Query:   143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
              VFLSHH+S         +V QKPD+KR  +D  VF D ++  FD +++CTG YKY++
Sbjct:   216 QVFLSHHLSTTPNTAFMGNVTQKPDVKRFTKDGAVFTDGSTESFDHVMFCTG-YKYTF 272

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=ISS;NAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q8MP06 sno1 "Senecionine N-oxygenase" [Tyria jacobaeae (taxid:179666)]

 Score = 247 (92.0 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 49/131 (37%), Positives = 73/131 (55%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             S   S P IP  +G + ++G  MHSHDY+  + FR Q VL++G GPSG+D+ M +  +  
Sbjct:   173 SGEFSTPKIPHIKGQEEYKGKTMHSHDYKEAESFRGQRVLVIGAGPSGLDVVMQLSNITS 232

Query:   143 NVFLSHHISVAF----KHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKY 198
              +  S HI  ++    +     + + KP++K    +  VF+DDT   FD +IYCTG Y  
Sbjct:   233 KLVHSQHILKSWHIFNQPDFPGNFISKPNVKHFTANGAVFEDDTVEEFDMVIYCTGFY-- 290

Query:   199 SYKLTFLATFS 209
              Y   FL+T S
Sbjct:   291 -YNHPFLSTLS 300

GO:0009820 "alkaloid metabolic process" evidence=IDA

GO:0033784 "senecionine N-oxygenase activity" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

FB|FBgn0034943 Fmo-1 "Flavin-containing monooxygenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 234 (87.4 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 42/118 (35%), Positives = 71/118 (60%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H   PN       + F+G  +HSHD+R  + F  ++VL++G GPSG+D++  I + A 
Sbjct:   148 NGHYHTPNYSQIPNMERFKGQFLHSHDFRSREVFEGKSVLVIGAGPSGMDLSNIISRTAD 207

Query:   143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSY 200
              V +SHH++   +H   ++V QKPD++ L +    F D +   FD++ +CTG YKY++
Sbjct:   208 RVTISHHLTDIGQHSFFENVQQKPDVRELDEKGAFFVDGSYQEFDTVFFCTG-YKYAF 264

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=ISS

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004497 "monooxygenase activity" evidence=IDA

TAIR|locus:2177813 AT5G07800 "AT5G07800" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 55/129 (42%), Positives = 77/129 (59%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H S P +PS +G D ++  Q+HSH YRVPDPFR++ V++VG   SG DI+M++ +VAK
Sbjct:   180 TGHYSHPRLPSIKGMDSWKRKQIHSHVYRVPDPFRNEVVVVVGNSMSGQDISMELVEVAK 239

Query:   143 NVFLSHH---ISVAFKHQIGD--SVVQKPDIKRLLQDS-VVFQDDTSHPFDSIIYCTGAY 196
              V LS     IS      I    +++  P I+ L  D  V+F D +    D+I+YCTG  
Sbjct:   240 EVHLSAKTLDISSGLSKVISKHPNLLIHPQIESLEDDGKVIFVDGSWVVADTILYCTG-- 297

Query:   197 KYSYKLTFL 205
              YSYK  FL
Sbjct:   298 -YSYKFPFL 305

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2163193 AT5G61290 "AT5G61290" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/132 (41%), Positives = 80/132 (60%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             S H S P +P+ +G DL++  Q+HSH YRVP+PF D+ V++VG   SG DI++++ +VAK
Sbjct:   178 SGHYSYPRLPTIKGMDLWKRKQLHSHIYRVPEPFCDEVVVVVGCSMSGQDISIELVEVAK 237

Query:   143 NVFLSHH-------IS-VAFKHQIGDSVVQKPDIKRLLQDS-VVFQDDTSHPFDSIIYCT 193
              V LS         +S V  KHQ   ++   P I+ L +D  V+F+D +    D+I+YCT
Sbjct:   238 EVHLSTKSLDIPPGLSKVIEKHQ---NLHLHPQIESLEEDGRVIFEDGSCIVADTILYCT 294

Query:   194 GAYKYSYKLTFL 205
             G   Y YK  FL
Sbjct:   295 G---YEYKFPFL 303

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2202038 AT1G12160 "AT1G12160" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 47/126 (37%), Positives = 75/126 (59%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H + P +    G + + G Q+HSH+YR+PDPF+D+ V+++G   SG DI+ DI  +AK
Sbjct:   169 NGHFTEPRLAHIPGIESWPGKQIHSHNYRIPDPFKDEVVIVIGSQASGNDISTDIATIAK 228

Query:   143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKYSYK 201
              V +S  +  +  +   D++   P I R  +D SVVF++      D+I++CTG YKY + 
Sbjct:   229 EVHISSKMVASDSYGCYDNLRIHPTIYRAREDGSVVFRNGKVVFADAIVHCTG-YKYHFP 287

Query:   202 LTFLAT 207
               FL T
Sbjct:   288 --FLKT 291

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2203901 FMO GS-OX4 "AT1G62570" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 54/147 (36%), Positives = 85/147 (57%)

Query:    66 FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVG 125
             F+N+EI   Y+ +  +   H + PNI    G + + G Q HSH YRVPDPF+D+ V+++G
Sbjct:   156 FSNDEI---YDAVV-MCCGHFAEPNIAQIPGIESWPGRQTHSHSYRVPDPFKDEVVVVIG 211

Query:   126 FGPSGVDIAMDIEKVAKNVFLSHHISVA--F-KHQI-GDSVVQKPDIKRLLQD-SVVFQD 180
                SG DI+ DI KVAK V ++   S +  F K  +  +++    +I    +D ++VF++
Sbjct:   212 NFASGADISRDISKVAKEVHIASRASKSNTFEKRPVPNNNLWMHSEIDTAHEDGTIVFKN 271

Query:   181 DTSHPFDSIIYCTGAYKYSYKLTFLAT 207
                   D+I++CTG YKY +   FL T
Sbjct:   272 GKVVHADTIVHCTG-YKYYFP--FLET 295

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IDA

TAIR|locus:2201981 AT1G12130 "AT1G12130" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 49/127 (38%), Positives = 73/127 (57%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H + P +    G + + G Q+HSH+YRV DPF+ Q V+++G+  SG DI+ DI  +AK
Sbjct:   172 NGHFTEPRLAHIPGIESWPGKQIHSHNYRVSDPFKGQVVIVIGYQSSGSDISRDIAILAK 231

Query:   143 NVFLSHHISVAFKHQ-IGDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKYSY 200
              V ++       K   I  ++   P I R+ +D SVVFQD      D+I++CTG YKY +
Sbjct:   232 EVHIAAKSDAYAKESSIYSNLHFHPTIDRVYEDGSVVFQDGKLIFADAIVHCTG-YKYCF 290

Query:   201 KLTFLAT 207
                FL T
Sbjct:   291 P--FLET 295

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2203871 FMO GS-OX2 "AT1G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 48/130 (36%), Positives = 73/130 (56%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             S H + PN+    G   + G Q+HSH+YRVP PF ++ V+++G   SG DI+ DI KVAK
Sbjct:   169 SGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPGPFENEVVVVIGNFASGADISRDIAKVAK 228

Query:   143 NVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
              V ++   S    ++      +++    +I    +D S+VF++      DSI+YCTG   
Sbjct:   229 EVHIASRASEFDTYEKLPVPRNNLWIHSEIDTAYEDGSIVFKNGKVVYADSIVYCTG--- 285

Query:   198 YSYKLTFLAT 207
             Y Y+ TFL T
Sbjct:   286 YKYRFTFLET 295

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

TAIR|locus:2203891 FMO GS-OX3 "AT1G62560" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 9.5e-15, P = 9.5e-15
 Identities = 49/130 (37%), Positives = 75/130 (57%)

Query:    83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
             + H + PNI    G   + G Q+HSH+YRVPDPF ++ V+++G   SG DI+ DI KVAK
Sbjct:   170 NGHYTEPNIAHIPGIKSWPGKQIHSHNYRVPDPFENEVVVVIGNFASGADISRDIAKVAK 229

Query:   143 NVFLSHHISVAFKHQ-IG---DSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
              V ++        ++ I    +++    +I    +D S+VF++      DSI+YCTG YK
Sbjct:   230 EVHIASRAREPHTYEKISVPQNNLWMHSEIDTTHEDGSIVFKNGKVIFADSIVYCTG-YK 288

Query:   198 YSYKLTFLAT 207
             Y++   FL T
Sbjct:   289 YNFP--FLET 296

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0004499 "N,N-dimethylaniline monooxygenase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

GO:0080102 "3-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080103 "4-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0080104 "5-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080105 "6-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080106 "7-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP

GO:0080107 "8-methylthiopropyl glucosinolate S-oxygenase activity" evidence=IMP;IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	227
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	1e-18
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	9e-15
pfam00743	532	pfam00743, FMO-like, Flavin-binding monooxygenase-	5e-12
TIGR04046	400	TIGR04046, MSMEG_0569_nitr, flavin-dependent oxido	4e-06
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	3e-04

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 83.4 bits (206), Expect = 1e-18
 Identities = 45/130 (34%), Positives = 74/130 (56%), Gaps = 8/130 (6%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H + PN+    G   + G Q+HSH+YRVPDPF+++ V+++G   SG DI+ DI KVAK
Sbjct: 169 NGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAK 228

Query: 143 NVFLSHHISVAFKHQI----GDSVVQKPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYK 197
            V ++   S +  ++      +++    +I    +D S+VF++      D+I++CTG   
Sbjct: 229 EVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG--- 285

Query: 198 YSYKLTFLAT 207
           Y Y   FL T
Sbjct: 286 YKYHFPFLET 295

Length = 461

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 72.1 bits (177), Expect = 9e-15
 Identities = 27/65 (41%), Positives = 40/65 (61%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P IP + G D F+G  +HS D+  P+  R + VL++G G S VDIA ++ +V  
Sbjct: 140 TGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGA 199

Query: 143 NVFLS 147
           +V LS
Sbjct: 200 SVTLS 204

Length = 443

>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 83  SSHNSVPNIP--SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV 140
           + H++ P++P  S+ G + F+G   HS DY+ P+ F+ + VL++G G SG DIA+++ + 
Sbjct: 146 TGHHTNPHLPLESFPGINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRT 205

Query: 141 AKNVFLS 147
           A  VFLS
Sbjct: 206 AAQVFLS 212

This family includes FMO proteins, cyclohexanone mono-oxygenase and a number of different mono-oxygenases. Length = 532

>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase, MSMEG_0569 family

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 6/63 (9%)

Query: 88  VPNIPSYEG---ADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
           VP IP       AD+   LQ+HS +YR PD   D  VL+VG G SG  IA D+    + V
Sbjct: 131 VPVIPPLAERLPADV---LQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKV 187

Query: 145 FLS 147
            L+
Sbjct: 188 HLA 190

Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor. Length = 400

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 107 SHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQ-- 164
           SH Y+   P+  Q V++VG   S VD A+++ +    V + H        ++  SV    
Sbjct: 141 SHYYKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEVTMVH-----RGDEVSSSVKYWV 195

Query: 165 KPDIK 169
           +PDI+
Sbjct: 196 RPDIE 200

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.93
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.92
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.88
PRK07846	451	mycothione reductase; Reviewed	99.86
PLN02507	499	glutathione reductase	99.86
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.84
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.84
PRK06116	450	glutathione reductase; Validated	99.83
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.83
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.83
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.82
KOG1399|consensus	448		99.82
PRK06370	463	mercuric reductase; Validated	99.82
PLN02546	558	glutathione reductase	99.82
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.81
TIGR02053	463	MerA mercuric reductase. This model represents the	99.81
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.81
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.81
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.8
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.8
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.8
PRK14694	468	putative mercuric reductase; Provisional	99.79
PTZ00058	561	glutathione reductase; Provisional	99.79
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.79
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.79
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.78
PRK10262	321	thioredoxin reductase; Provisional	99.78
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.78
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.78
KOG1336|consensus	478		99.78
PRK13748	561	putative mercuric reductase; Provisional	99.78
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.77
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.77
PRK14727	479	putative mercuric reductase; Provisional	99.77
PTZ00052	499	thioredoxin reductase; Provisional	99.77
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.77
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.76
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.76
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.76
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.76
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.76
KOG0405|consensus	478		99.76
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.75
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.75
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.74
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.74
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.74
KOG0404|consensus	322		99.74
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.74
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.74
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.73
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.73
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.72
KOG1335|consensus	506		99.71
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.68
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.67
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.67
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.63
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.52
KOG4716|consensus	503		99.52
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.5
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.49
PRK12831	464	putative oxidoreductase; Provisional	99.46
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.44
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.42
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.39
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.32
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.31
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.31
KOG1346|consensus	659		99.26
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.26
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.24
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.24
KOG2495|consensus	491		99.24
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.23
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.2
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.16
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.15
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.1
PRK13984	604	putative oxidoreductase; Provisional	99.04
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.95
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.85
PLN02852	491	ferredoxin-NADP+ reductase	98.71
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.66
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.61
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.25
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.18
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.08
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.04
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.02
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.99
PRK09897	534	hypothetical protein; Provisional	97.95
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.91
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.9
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.85
KOG2755|consensus	334		97.82
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.8
COG2081	408	Predicted flavoproteins [General function predicti	97.74
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.69
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.69
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.68
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.65
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.62
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.57
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.56
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.53
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.47
PRK06116	450	glutathione reductase; Validated	97.45
PTZ00188	506	adrenodoxin reductase; Provisional	97.45
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.45
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.43
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.43
PRK10262	321	thioredoxin reductase; Provisional	97.43
PRK06847	375	hypothetical protein; Provisional	97.42
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.42
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.41
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.41
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.4
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.38
PRK12831	464	putative oxidoreductase; Provisional	97.37
PLN02852	491	ferredoxin-NADP+ reductase	97.35
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.35
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.34
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.33
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.3
PRK07236	386	hypothetical protein; Provisional	97.29
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.29
KOG3851|consensus	446		97.28
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.26
PRK06370	463	mercuric reductase; Validated	97.23
KOG1399|consensus	448		97.22
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.22
KOG1800|consensus	468		97.21
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.2
PRK06753	373	hypothetical protein; Provisional	97.2
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.19
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.16
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.14
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.14
PRK14694	468	putative mercuric reductase; Provisional	97.05
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.04
KOG0399|consensus	2142		97.03
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.03
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.03
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.03
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.0
PRK07588	391	hypothetical protein; Provisional	96.97
PRK05868	372	hypothetical protein; Validated	96.95
PLN02546	558	glutathione reductase	96.94
PRK08163	396	salicylate hydroxylase; Provisional	96.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.92
PTZ00058	561	glutathione reductase; Provisional	96.91
KOG1336|consensus	478		96.87
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.87
PRK09126	392	hypothetical protein; Provisional	96.86
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.85
PLN02463	447	lycopene beta cyclase	96.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.83
PLN02507	499	glutathione reductase	96.81
PRK14727	479	putative mercuric reductase; Provisional	96.8
KOG0399|consensus	2142		96.78
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.77
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.76
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.76
PRK13984	604	putative oxidoreductase; Provisional	96.75
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.7
TIGR02053	463	MerA mercuric reductase. This model represents the	96.7
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.66
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.65
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.62
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	96.61
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.61
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.6
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.57
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.57
PRK06834	488	hypothetical protein; Provisional	96.57
KOG2495|consensus	491		96.56
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.55
PRK07045	388	putative monooxygenase; Reviewed	96.54
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.5
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.5
KOG2311|consensus	679		96.5
PRK06184	502	hypothetical protein; Provisional	96.48
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.48
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.46
PRK13748	561	putative mercuric reductase; Provisional	96.46
KOG2755|consensus	334		96.38
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.35
PTZ00052	499	thioredoxin reductase; Provisional	96.31
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.3
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.26
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.23
COG2081	408	Predicted flavoproteins [General function predicti	96.22
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.22
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.2
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.11
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.08
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.05
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.05
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.03
PLN02697	529	lycopene epsilon cyclase	96.02
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	95.98
PRK07846	451	mycothione reductase; Reviewed	95.89
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	95.87
PTZ00188	506	adrenodoxin reductase; Provisional	95.79
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	95.71
KOG0404|consensus	322		95.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.64
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	95.5
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.48
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.47
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.44
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.44
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.43
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.34
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.34
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.31
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.28
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.25
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.22
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.2
PRK11883	451	protoporphyrinogen oxidase; Reviewed	95.17
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.16
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.16
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.14
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.13
KOG0029|consensus	501		95.11
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	95.04
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.02
COG3349	485	Uncharacterized conserved protein [Function unknow	95.01
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	94.99
PRK07233	434	hypothetical protein; Provisional	94.98
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.96
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	94.95
PRK06996	398	hypothetical protein; Provisional	94.94
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.94
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.78
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	94.75
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	94.74
PRK06475	400	salicylate hydroxylase; Provisional	94.7
PLN02268	435	probable polyamine oxidase	94.68
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.6
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.55
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.47
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.47
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.4
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.39
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	94.34
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.34
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	94.33
KOG1276|consensus	491		94.32
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.27
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.25
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	94.25
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	94.21
PRK07208	479	hypothetical protein; Provisional	94.15
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	94.14
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.12
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	94.1
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.09
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.08
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	94.08
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.07
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	94.06
PRK11728	393	hydroxyglutarate oxidase; Provisional	94.03
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	93.97
PRK08244	493	hypothetical protein; Provisional	93.95
PRK08013	400	oxidoreductase; Provisional	93.94
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	93.94
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	93.94
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	93.87
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	93.83
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	93.81
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.76
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.73
PRK06126	545	hypothetical protein; Provisional	93.73
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	93.73
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	93.7
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.68
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	93.65
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.65
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.61
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	93.6
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.59
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	93.59
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	93.58
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.57
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	93.55
PRK06185	407	hypothetical protein; Provisional	93.53
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	93.52
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	93.52
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.45
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	93.42
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	93.4
PRK12416	463	protoporphyrinogen oxidase; Provisional	93.4
PRK07538	413	hypothetical protein; Provisional	93.39
PLN02576	496	protoporphyrinogen oxidase	93.35
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	93.32
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.32
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.31
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	93.26
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.23
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	93.22
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.21
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	93.19
PLN02464	627	glycerol-3-phosphate dehydrogenase	93.19
PRK10157	428	putative oxidoreductase FixC; Provisional	93.16
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	93.1
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.94
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	92.92
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	92.91
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	92.91
PRK08132	547	FAD-dependent oxidoreductase; Provisional	92.8
PRK10015	429	oxidoreductase; Provisional	92.79
PRK07190	487	hypothetical protein; Provisional	92.68
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.67
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	92.66
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.65
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	92.62
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	92.59
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.57
PLN02529	738	lysine-specific histone demethylase 1	92.56
PRK10637	457	cysG siroheme synthase; Provisional	92.52
KOG2614|consensus	420		92.48
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.47
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	92.44
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	92.43
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	92.42
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.35
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.34
PLN02985	514	squalene monooxygenase	92.34
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.28
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.24
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	92.23
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	92.16
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.05
PLN02487	569	zeta-carotene desaturase	92.04
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.04
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	91.98
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.98
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	91.91
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.9
PRK08294	634	phenol 2-monooxygenase; Provisional	91.88
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.87
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.81
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	91.81
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.78
PRK09897	534	hypothetical protein; Provisional	91.77
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.73
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	91.7
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	91.64
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.56
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.56
PRK11445	351	putative oxidoreductase; Provisional	91.54
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.53
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.48
PLN02612	567	phytoene desaturase	91.45
PTZ00383	497	malate:quinone oxidoreductase; Provisional	91.41
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.39
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.38
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.35
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	91.34
PRK08274	466	tricarballylate dehydrogenase; Validated	91.3
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.26
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.22
PTZ00367	567	squalene epoxidase; Provisional	91.22
KOG1346|consensus	659		91.12
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	91.1
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.03
PLN02568	539	polyamine oxidase	91.01
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.98
PLN02676	487	polyamine oxidase	90.94
PLN02328	808	lysine-specific histone demethylase 1 homolog	90.93
PRK13977	576	myosin-cross-reactive antigen; Provisional	90.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	90.91
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.89
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.88
KOG1298|consensus	509		90.85
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	90.78
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.76
PRK04148	134	hypothetical protein; Provisional	90.75
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.68
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.61
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	90.6
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.51
PLN03000	881	amine oxidase	90.45
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.44
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.42
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	90.38
PRK13403	335	ketol-acid reductoisomerase; Provisional	90.35
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	90.3
PRK13339	497	malate:quinone oxidoreductase; Reviewed	90.27
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.25
PRK06701	290	short chain dehydrogenase; Provisional	90.2
TIGR00275	400	flavoprotein, HI0933 family. The model when search	90.19
PRK05257	494	malate:quinone oxidoreductase; Validated	90.18
PLN02661	357	Putative thiazole synthesis	90.14
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.12
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.11
PTZ00383	497	malate:quinone oxidoreductase; Provisional	90.11
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	90.07
KOG0685|consensus	498		90.0
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	89.93
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.92
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	89.91
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	89.85
PRK07121	492	hypothetical protein; Validated	89.79
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	89.73
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	89.66
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	89.58
PRK13243	333	glyoxylate reductase; Reviewed	89.56
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.43
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	89.41
PRK12480	330	D-lactate dehydrogenase; Provisional	89.4
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	89.39
TIGR00275	400	flavoprotein, HI0933 family. The model when search	89.39
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	89.38
PRK08401	466	L-aspartate oxidase; Provisional	89.36
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.3
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	89.27
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	89.26
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	89.23
PRK06847	375	hypothetical protein; Provisional	89.22
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	89.13
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	88.99
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.96
PRK09620	229	hypothetical protein; Provisional	88.96
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.94
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.92
PRK05479	330	ketol-acid reductoisomerase; Provisional	88.87
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	88.81
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	88.71
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	88.49
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	88.49
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.48
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	88.47
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	88.47
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	88.42
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.33
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.19
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.18
PLN02928	347	oxidoreductase family protein	88.12
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.11
PRK09414	445	glutamate dehydrogenase; Provisional	88.11
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	87.97
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	87.89
COG0579	429	Predicted dehydrogenase [General function predicti	87.85
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	87.82
PRK13339	497	malate:quinone oxidoreductase; Reviewed	87.82
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	87.74
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	87.74
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	87.54
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	87.53
PRK07774	250	short chain dehydrogenase; Provisional	87.51
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.44
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.38
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	87.37
PRK14031	444	glutamate dehydrogenase; Provisional	87.34
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	87.33
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	87.31
KOG4716|consensus	503		87.27
KOG0405|consensus	478		87.26
PLN02494	477	adenosylhomocysteinase	87.22
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	87.21
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	87.15
PRK11728	393	hydroxyglutarate oxidase; Provisional	86.94
PRK06436	303	glycerate dehydrogenase; Provisional	86.93
PLN02976	1713	amine oxidase	86.91
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	86.87
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	86.84
PRK09126	392	hypothetical protein; Provisional	86.8
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	86.79
KOG1800|consensus	468		86.72
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	86.71
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	86.68
PRK12842	574	putative succinate dehydrogenase; Reviewed	86.66
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	86.6
COG0579	429	Predicted dehydrogenase [General function predicti	86.58
PRK07804	541	L-aspartate oxidase; Provisional	86.52
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	86.48
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	86.47
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.47
PRK08213	259	gluconate 5-dehydrogenase; Provisional	86.47
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	86.39
PLN02653	340	GDP-mannose 4,6-dehydratase	86.38
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	86.36
PLN02695	370	GDP-D-mannose-3',5'-epimerase	86.33
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	86.24
KOG2852|consensus	380		86.2
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.19
KOG2820|consensus	399		86.16
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.09
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	86.09
PRK06057	255	short chain dehydrogenase; Provisional	86.09
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	86.09
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	85.95
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	85.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	85.88
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	85.87

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.93  E-value=1.1e-24  Score=192.75  Aligned_cols=166  Identities=28%  Similarity=0.477  Sum_probs=137.0

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCe----eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEI----TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~----~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .|+++++|.+|++.+   +.|.|.+.++    ....||+||+|||....|++|++||.+.+.|..+|++.+++...+++|
T Consensus       129 ~I~~~t~V~~V~~~~---~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk  205 (461)
T PLN02172        129 MVRFETEVVRVEPVD---GKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNE  205 (461)
T ss_pred             eEEecCEEEEEeecC---CeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCC
Confidence            489999999998643   6799976421    356899999999987799999999999999999999999999999999


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccc-cccCC---CceEEcCCccEEeC-CceEEcCCCEEeccEEEEccc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF-KHQIG---DSVVQKPDIKRLLQ-DSVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~-~~~~~---~~i~~~~~i~~~~~-~~v~~~~g~~i~~D~vi~atG  194 (227)
                      +|+|||+|++|+|+|..|.+.+++|++++|+.... ...++   .++...+.|..+.+ +.|+|+||+.+++|.||+|||
T Consensus       206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TG  285 (461)
T PLN02172        206 VVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTG  285 (461)
T ss_pred             EEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCc
Confidence            99999999999999999999999999999954321 11122   35666677776654 459999999999999999999


Q ss_pred             cccccccccccCCcc-cccccC
Q psy810          195 AYKYSYKLTFLATFS-ISMAMS  215 (227)
Q Consensus       195 ~~~~~~~~~~l~~~g-l~~~~~  215 (227)
                       +++++  +||++.+ +..+.+
T Consensus       286 -y~~~~--pfL~~~~~i~v~~~  304 (461)
T PLN02172        286 -YKYHF--PFLETNGYMRIDEN  304 (461)
T ss_pred             -CCccc--cccCcccceeeCCC
Confidence             99999  9999755 445544

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.92  E-value=5.2e-25  Score=197.27  Aligned_cols=171  Identities=35%  Similarity=0.580  Sum_probs=122.2

Q ss_pred             ceeEEeCceEEEEEEeeCC--CCcEEEecCC---eeEEEcCEEEEccCCCCCCCCCC--CCCCCcccceeeecCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVP--TKCLHFANEE---ITLHYNLLQSLPSSHNSVPNIPS--YEGADLFRGLQMHSHDYRVPD  114 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~--~~~~~v~~~~---~~~~~~~~vilAtG~~~~p~~p~--~~g~~~~~~~~~~~~~~~~~~  114 (227)
                      .-.|+||++|.++++.++.  .+.|+|++.+   .++..||+||+|||.+..|++|.  +||++.|.|.++|+.+|.+++
T Consensus       100 ~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~  179 (531)
T PF00743_consen  100 RKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPE  179 (531)
T ss_dssp             GGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGG
T ss_pred             cceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChh
Confidence            4489999999999976542  3579997643   24567999999999999999995  999999999999999999999


Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------------------cCC------------
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------------------QIG------------  159 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------------------~~~------------  159 (227)
                      .++||+|+|||+|+||+|+|.++++.+++|+++.|++..+-.                       .++            
T Consensus       180 ~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l  259 (531)
T PF00743_consen  180 PFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKL  259 (531)
T ss_dssp             GGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------------------------------
T ss_pred             hcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999987422100                       000            


Q ss_pred             ----------------------------------CceEEcCCccEEeCCceEEcCCCEE-eccEEEEccccccccccccc
Q psy810          160 ----------------------------------DSVVQKPDIKRLLQDSVVFQDDTSH-PFDSIIYCTGAYKYSYKLTF  204 (227)
Q Consensus       160 ----------------------------------~~i~~~~~i~~~~~~~v~~~~g~~i-~~D~vi~atG~~~~~~~~~~  204 (227)
                                                        ++|..++.|.++.+++|+|.||+++ ++|.||+||| |+.++  ||
T Consensus       260 ~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TG-Y~~~f--pF  336 (531)
T PF00743_consen  260 NKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTG-YKFSF--PF  336 (531)
T ss_dssp             ---------------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE----EE-----TT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc--cc
Confidence                                              1455567899999999999999985 7999999999 99999  99


Q ss_pred             cCCcccccccC
Q psy810          205 LATFSISMAMS  215 (227)
Q Consensus       205 l~~~gl~~~~~  215 (227)
                      |++..++..++
T Consensus       337 L~~~~~~~~~~  347 (531)
T PF00743_consen  337 LDESLIKVDDN  347 (531)
T ss_dssp             B-TTTT-S-SS
T ss_pred             ccccccccccc
Confidence            99877666543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.88  E-value=7.9e-23  Score=179.27  Aligned_cols=202  Identities=14%  Similarity=0.122  Sum_probs=132.8

Q ss_pred             CCCCchhhhhhhcCCCCCCchhhhh------------------hcCCcceEeeecccceeEEeC-ceEEEEEEeeCCCCc
Q psy810            3 LTPSCLPSVLTTYNSEALQPIRKLR------------------ESQPTNFISIAFIPCIEIKFG-SSWAEIEKFSVPTKC   63 (227)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~~l~------------------~~~~~~~~~~~~~~~~~i~~~-~~V~~i~~~~~~~~~   63 (227)
                      +|.||||||.+.+.++.+...+...                  +.... +... ....+.-.+. ..|+-+.....-.+.
T Consensus        44 ln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~~~~~k~~-v~~~-~~~~~~~l~~~~~V~vi~G~a~f~~~  121 (454)
T COG1249          44 LNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDK-VVRL-LTGGVEGLLKKNGVDVIRGEARFVDP  121 (454)
T ss_pred             EeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHHHHHHHHH-HHHH-HhhhHHHHHhhCCCEEEEEEEEECCC
Confidence            7999999999999988764443221                  11100 0000 0000011111 133333332221123


Q ss_pred             EEEecCC--eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           64 LHFANEE--ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        64 ~~v~~~~--~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      .++....  .+.++++++|||||+  +|..|++++.+...  .+.+.+.....+ .+++++|||||.+|+|+|..++++|
T Consensus       122 ~~v~V~~~~~~~~~a~~iiIATGS--~p~~~~~~~~~~~~--~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG  196 (454)
T COG1249         122 HTVEVTGEDKETITADNIIIATGS--RPRIPPGPGIDGAR--ILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALG  196 (454)
T ss_pred             CEEEEcCCCceEEEeCEEEEcCCC--CCcCCCCCCCCCCe--EEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcC
Confidence            3443333  578999999999999  99999999876532  333333333333 5899999999999999999999999


Q ss_pred             CeEEEEeecCccccccCCC---------------ceEEcCCccEEeCC----ceEEcCCC--EEeccEEEEccccccccc
Q psy810          142 KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQD----SVVFQDDT--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~----~v~~~~g~--~i~~D~vi~atG~~~~~~  200 (227)
                      .+||++++.+..+.. +++               .+..+..+.+++.+    .+.+++|.  .+.+|.+++|+| .+||+
T Consensus       197 ~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiG-R~Pn~  274 (454)
T COG1249         197 SKVTVVERGDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIG-RKPNT  274 (454)
T ss_pred             CcEEEEecCCCCCCc-CCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccC-CccCC
Confidence            999999996654432 221               23345566677543    26677776  688999999999 99999


Q ss_pred             ccc--ccCCcccccccC
Q psy810          201 KLT--FLATFSISMAMS  215 (227)
Q Consensus       201 ~~~--~l~~~gl~~~~~  215 (227)
                        +  -|++.|++++..
T Consensus       275 --~~LgLe~~Gv~~~~r  289 (454)
T COG1249         275 --DGLGLENAGVELDDR  289 (454)
T ss_pred             --CCCChhhcCceECCC
Confidence              6  678999999875

>PRK07846 mycothione reductase; Reviewed

Probab=99.86  E-value=2e-21  Score=171.95  Aligned_cols=146  Identities=12%  Similarity=0.062  Sum_probs=105.2

Q ss_pred             CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      +..+|...+++.+.||+||||||+  .|..|++||.+..  ......+..... ..+++++|||+|++|+|+|..|+++|
T Consensus       115 ~~~~V~v~~g~~~~~d~lViATGs--~p~~p~i~g~~~~--~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G  189 (451)
T PRK07846        115 GPKTLRTGDGEEITADQVVIAAGS--RPVIPPVIADSGV--RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALG  189 (451)
T ss_pred             cCCEEEECCCCEEEeCEEEEcCCC--CCCCCCCCCcCCc--cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcC
Confidence            345666666668999999999999  8899999986431  111211222212 24689999999999999999999999


Q ss_pred             CeEEEEeecCcccccc-----------CCCce--EEcCCccEEeCC--c--eEEcCCCEEeccEEEEccccccccccccc
Q psy810          142 KNVFLSHHISVAFKHQ-----------IGDSV--VQKPDIKRLLQD--S--VVFQDDTSHPFDSIIYCTGAYKYSYKLTF  204 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~-----------~~~~i--~~~~~i~~~~~~--~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~  204 (227)
                      .+|||+++++..+...           +..++  ..+..+.+++.+  +  +.+.+|+++++|.||+|+| ++||+  ++
T Consensus       190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G-~~pn~--~~  266 (451)
T PRK07846        190 VRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATG-RVPNG--DL  266 (451)
T ss_pred             CeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEEC-CccCc--cc
Confidence            9999999965433210           11233  345567777543  2  5567888999999999999 99999  88


Q ss_pred             c--CCcccccccC
Q psy810          205 L--ATFSISMAMS  215 (227)
Q Consensus       205 l--~~~gl~~~~~  215 (227)
                      |  +..+++++..
T Consensus       267 l~~~~~gl~~~~~  279 (451)
T PRK07846        267 LDAAAAGVDVDED  279 (451)
T ss_pred             cCchhcCceECCC
Confidence            6  5778887643

>PLN02507 glutathione reductase

Probab=99.86  E-value=4.8e-21  Score=171.43  Aligned_cols=149  Identities=12%  Similarity=0.157  Sum_probs=107.8

Q ss_pred             CcEEEecCCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+.+.+++  .+.||+||||||+  .|..|++||.+..    +.+.+...... .+++|+|||+|++|+|+|..+.+
T Consensus       152 ~~v~V~~~~g~~~~~~~d~LIIATGs--~p~~p~ipG~~~~----~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~  224 (499)
T PLN02507        152 NEVEVTQLDGTKLRYTAKHILIATGS--RAQRPNIPGKELA----ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRG  224 (499)
T ss_pred             CEEEEEeCCCcEEEEEcCEEEEecCC--CCCCCCCCCccce----echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHH
Confidence            55777766653  6899999999999  8899999986431    22222222222 36899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cc--eEEcCCCEEeccEEEEccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ++.+|||+++.+..+.. ++             .  ++..+..+.++..  ++  +.+.+|+++++|.||+|+| ++||+
T Consensus       225 ~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~pn~  302 (499)
T PLN02507        225 MGATVDLFFRKELPLRG-FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATG-RAPNT  302 (499)
T ss_pred             cCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeec-CCCCC
Confidence            99999999996544322 21             1  3344556777753  33  5566788899999999999 99999


Q ss_pred             cccc--cCCcccccccCCCCCCCCCC
Q psy810          201 KLTF--LATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       201 ~~~~--l~~~gl~~~~~~~~~~~~~~  224 (227)
                        .+  |++.|++++..   |.+++.
T Consensus       303 --~~l~l~~~gl~~~~~---G~I~Vd  323 (499)
T PLN02507        303 --KRLNLEAVGVELDKA---GAVKVD  323 (499)
T ss_pred             --CCCCchhhCcEECCC---CcEecC
Confidence              76  57888888753   544443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4.7e-20  Score=154.56  Aligned_cols=153  Identities=18%  Similarity=0.250  Sum_probs=125.5

Q ss_pred             ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCc
Q psy810           49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGP  128 (227)
Q Consensus        49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~  128 (227)
                      ..|.+++...   +.|.|.++++. +++++||||||.  .++.|.+||..+|+++.+|+|..|+. .+.+|+|+|||||+
T Consensus        81 ~~v~~v~~~~---~~F~v~t~~~~-~~ak~vIiAtG~--~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~  153 (305)
T COG0492          81 DEVEKVELEG---GPFKVKTDKGT-YEAKAVIIATGA--GARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGD  153 (305)
T ss_pred             EEEEEEeecC---ceEEEEECCCe-EEEeEEEECcCC--cccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCH
Confidence            5666655422   27999999987 999999999999  77888888877899999999999999 88999999999999


Q ss_pred             cHHHHHHHHHhccCeEEEEeecCccccc------cCCC--ceE--EcCCccEEeC---CceEEcCC--C--EEeccEEEE
Q psy810          129 SGVDIAMDIEKVAKNVFLSHHISVAFKH------QIGD--SVV--QKPDIKRLLQ---DSVVFQDD--T--SHPFDSIIY  191 (227)
Q Consensus       129 ~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~~~--~i~--~~~~i~~~~~---~~v~~~~g--~--~i~~D~vi~  191 (227)
                      +|+|.|.+|.+.+++||+++|++ .++.      .+..  ++.  .+..+.++.+   +++.+++.  .  .+++|.+++
T Consensus       154 sAve~Al~L~~~a~~Vtlv~r~~-~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~  232 (305)
T COG0492         154 SAVEEALYLSKIAKKVTLVHRRD-EFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFI  232 (305)
T ss_pred             HHHHHHHHHHHhcCeEEEEecCc-ccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEE
Confidence            99999999999999999999964 4443      1111  344  3567888877   36777764  2  579999999


Q ss_pred             ccccccccccccccCCcccccc
Q psy810          192 CTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       192 atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ++| +.|++  .|+...++ ++
T Consensus       233 ~iG-~~p~~--~~~~~~~~-~~  250 (305)
T COG0492         233 AIG-HLPNT--ELLKGLGV-LD  250 (305)
T ss_pred             ecC-CCCch--HHHhhccc-cC
Confidence            999 99999  99998888 44

>TIGR03452 mycothione_red mycothione reductase

Probab=99.84  E-value=9e-21  Score=167.92  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      +.++|...++..+.||+||||||+  .|..|++.+.+.  .....+.+.....+ .+++++|||+|++|+|+|..|.+.+
T Consensus       118 ~~~~V~~~~g~~~~~d~lIiATGs--~p~~p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G  192 (452)
T TIGR03452       118 GPRTLRTGDGEEITGDQIVIAAGS--RPYIPPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALG  192 (452)
T ss_pred             cCCEEEECCCcEEEeCEEEEEECC--CCCCCCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCC
Confidence            456677766668999999999999  888887543211  11122121211222 3689999999999999999999999


Q ss_pred             CeEEEEeecCccccccCC------------Cc--eEEcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccccc
Q psy810          142 KNVFLSHHISVAFKHQIG------------DS--VVQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKLT  203 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~------------~~--i~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~  203 (227)
                      .+||++++.+..+.. ++            .+  +..+..+.++..  ++  +.+.+|+++++|.||+|+| ++||+  .
T Consensus       193 ~~Vtli~~~~~ll~~-~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G-~~pn~--~  268 (452)
T TIGR03452       193 TRVTIVNRSTKLLRH-LDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATG-RVPNG--D  268 (452)
T ss_pred             CcEEEEEccCccccc-cCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeec-cCcCC--C
Confidence            999999985543221 11            23  334556777753  23  4566788899999999999 99999  8


Q ss_pred             cc--CCcccccccC
Q psy810          204 FL--ATFSISMAMS  215 (227)
Q Consensus       204 ~l--~~~gl~~~~~  215 (227)
                      +|  +..|++++..
T Consensus       269 ~l~~~~~gl~~~~~  282 (452)
T TIGR03452       269 LLDAEAAGVEVDED  282 (452)
T ss_pred             CcCchhcCeeECCC
Confidence            85  5678887643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06116 glutathione reductase; Validated

Probab=99.83  E-value=1.8e-20  Score=166.06  Aligned_cols=140  Identities=14%  Similarity=0.171  Sum_probs=102.9

Q ss_pred             EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810           64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN  143 (227)
Q Consensus        64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~  143 (227)
                      +++.. +++.+.||+||||||+  .|..|++||.+.    .+++..+..... .+++++|||+|++|+|+|..|.+.+.+
T Consensus       121 ~~v~~-~g~~~~~d~lViATGs--~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~  192 (450)
T PRK06116        121 HTVEV-NGERYTADHILIATGG--RPSIPDIPGAEY----GITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSE  192 (450)
T ss_pred             CEEEE-CCEEEEeCEEEEecCC--CCCCCCCCCcce----eEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence            45555 4568999999999999  889999998653    223222222222 368999999999999999999999999


Q ss_pred             EEEEeecCccccccCC-------------Cce--EEcCCccEEeC--Cc---eEEcCCCEEeccEEEEcccccccccccc
Q psy810          144 VFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ--DS---VVFQDDTSHPFDSIIYCTGAYKYSYKLT  203 (227)
Q Consensus       144 Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~--~~---v~~~~g~~i~~D~vi~atG~~~~~~~~~  203 (227)
                      ||++++++..+.. ++             .+|  ..+..+.++..  ++   +.+.+|+++++|.||+|+| ++|++  .
T Consensus       193 Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G-~~p~~--~  268 (450)
T PRK06116        193 THLFVRGDAPLRG-FDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIG-REPNT--D  268 (450)
T ss_pred             EEEEecCCCCccc-cCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeC-CCcCC--C
Confidence            9999986543321 11             233  33556777753  22   5667888999999999999 99999  7


Q ss_pred             c--cCCcccccccC
Q psy810          204 F--LATFSISMAMS  215 (227)
Q Consensus       204 ~--l~~~gl~~~~~  215 (227)
                      +  ++..+++++..
T Consensus       269 ~l~l~~~g~~~~~~  282 (450)
T PRK06116        269 GLGLENAGVKLNEK  282 (450)
T ss_pred             CCCchhcCceECCC
Confidence            5  56778887643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.83  E-value=2.1e-20  Score=165.38  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             cEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810           63 CLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        63 ~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~  142 (227)
                      ...+. .++..+.||+||||||+  .|..|++||.+..    +.+....... ..+++++|||+|++|+|+|..+.+.+.
T Consensus       119 ~v~v~-~~g~~~~~d~lIiATGs--~p~~p~i~G~~~~----~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~  190 (446)
T TIGR01424       119 TVEVL-QDGTTYTAKKILIAVGG--RPQKPNLPGHELG----ITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGV  190 (446)
T ss_pred             EEEEe-cCCeEEEcCEEEEecCC--cCCCCCCCCccce----echHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCC
Confidence            34443 34567999999999999  8899999986431    1211111212 237899999999999999999999999


Q ss_pred             eEEEEeecCccccccCC-------------Cce--EEcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccccc
Q psy810          143 NVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKLT  203 (227)
Q Consensus       143 ~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~  203 (227)
                      +|+++++.+..+.. ++             .++  ..+..+.++..  ++  +.+.+|.++++|.||+|+| ..||+  .
T Consensus       191 ~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G-~~pn~--~  266 (446)
T TIGR01424       191 QVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATG-RSPNT--K  266 (446)
T ss_pred             eEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeC-CCcCC--C
Confidence            99999986543221 11             133  34556777753  23  5567888999999999999 99999  6


Q ss_pred             c--cCCcccccccC
Q psy810          204 F--LATFSISMAMS  215 (227)
Q Consensus       204 ~--l~~~gl~~~~~  215 (227)
                      +  |+..+++++..
T Consensus       267 ~l~l~~~g~~~~~~  280 (446)
T TIGR01424       267 GLGLEAAGVELNDA  280 (446)
T ss_pred             cCCccccCeEECCC
Confidence            5  57788877653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.83  E-value=1.5e-20  Score=167.57  Aligned_cols=134  Identities=15%  Similarity=0.158  Sum_probs=97.7

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc---cCeEEEE
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV---AKNVFLS  147 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli  147 (227)
                      .+.+.||+||||||+  .|..|++||.+..    +.+.+..... ..+++++|||||++|+|+|..+..+   |.+|||+
T Consensus       147 ~~~~~~d~lIIATGs--~p~~p~i~G~~~~----~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli  219 (486)
T TIGR01423       147 KERLQAEHILLATGS--WPQMLGIPGIEHC----ISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLC  219 (486)
T ss_pred             ceEEECCEEEEecCC--CCCCCCCCChhhe----echhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEE
Confidence            357999999999999  8899999997542    2222222222 2468999999999999999877665   8999999


Q ss_pred             eecCccccccCC-------------C--ceEEcCCccEEeC--C---ceEEcCCCEEeccEEEEccccccccccccc--c
Q psy810          148 HHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--D---SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF--L  205 (227)
Q Consensus       148 ~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~---~v~~~~g~~i~~D~vi~atG~~~~~~~~~~--l  205 (227)
                      ++.+..+. .++             .  ++..+..+.++..  +   .+.+.+|.++++|.||+|+| ++||+  .+  |
T Consensus       220 ~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~Pn~--~~l~l  295 (486)
T TIGR01423       220 YRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIG-RVPRT--QTLQL  295 (486)
T ss_pred             ecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeC-CCcCc--ccCCc
Confidence            98554332 122             1  3344556777753  2   26667888999999999999 99999  75  4


Q ss_pred             CCcccccccC
Q psy810          206 ATFSISMAMS  215 (227)
Q Consensus       206 ~~~gl~~~~~  215 (227)
                      +..+++++..
T Consensus       296 ~~~gl~~~~~  305 (486)
T TIGR01423       296 DKVGVELTKK  305 (486)
T ss_pred             hhhCceECCC
Confidence            6788887653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.82  E-value=6.5e-20  Score=162.37  Aligned_cols=139  Identities=15%  Similarity=0.200  Sum_probs=100.1

Q ss_pred             EEecCCeeEEEcCEEEEccCCCCCCCCC-CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810           65 HFANEEITLHYNLLQSLPSSHNSVPNIP-SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN  143 (227)
Q Consensus        65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~  143 (227)
                      ++..+ +..+.||+||||||+  .|..| ++||.+..    +.+..+..... .+++++|||||++|+|+|..|++.+.+
T Consensus       120 ~v~v~-~~~~~~d~vIiAtGs--~p~~p~~i~g~~~~----~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~  191 (450)
T TIGR01421       120 TVEVN-GRDYTAPHILIATGG--KPSFPENIPGAELG----TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSE  191 (450)
T ss_pred             EEEEC-CEEEEeCEEEEecCC--CCCCCCCCCCCcee----EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCc
Confidence            34443 357999999999999  88888 88986431    12222222222 368999999999999999999999999


Q ss_pred             EEEEeecCccccccCC-------------CceE--EcCCccEEeCC--c---eEEcCC-CEEeccEEEEccccccccccc
Q psy810          144 VFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQD--S---VVFQDD-TSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       144 Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~--~---v~~~~g-~~i~~D~vi~atG~~~~~~~~  202 (227)
                      |||+++.+..+.. ++             .+|.  .+..+.++..+  +   +++++| ..+++|.||+|+| ++||+  
T Consensus       192 Vtli~~~~~il~~-~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G-~~pn~--  267 (450)
T TIGR01421       192 THLVIRHERVLRS-FDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIG-RKPNT--  267 (450)
T ss_pred             EEEEecCCCCCcc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeC-CCcCc--
Confidence            9999996543322 22             1333  34567777532  2   566777 4689999999999 99999  


Q ss_pred             cc--cCCcccccccC
Q psy810          203 TF--LATFSISMAMS  215 (227)
Q Consensus       203 ~~--l~~~gl~~~~~  215 (227)
                      .+  |+..+++++..
T Consensus       268 ~~l~l~~~g~~~~~~  282 (450)
T TIGR01421       268 KGLGLENVGIKLNEK  282 (450)
T ss_pred             ccCCccccCcEECCC
Confidence            75  67888887753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG1399|consensus

Probab=99.82  E-value=2.4e-19  Score=156.83  Aligned_cols=166  Identities=33%  Similarity=0.559  Sum_probs=134.8

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCe----eEEEcCEEEEccCCCCCCCCCCCCC--CCcccceeeecCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEI----TLHYNLLQSLPSSHNSVPNIPSYEG--ADLFRGLQMHSHDYRVP  113 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~----~~~~~~~vilAtG~~~~p~~p~~~g--~~~~~~~~~~~~~~~~~  113 (227)
                      .....|+++++|..++...+  +.|.|.+.++    ....||.|++|||.+..|++|.+||  .+.|.|..+|+.+|+.+
T Consensus       104 ~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~  181 (448)
T KOG1399|consen  104 DLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSP  181 (448)
T ss_pred             ChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCc
Confidence            33447899998888886553  6899976432    5889999999999986699999998  66899999999999999


Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec---CccccccCCCceEEcCCccEEeCCceEEc-CCCEEeccEE
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI---SVAFKHQIGDSVVQKPDIKRLLQDSVVFQ-DDTSHPFDSI  189 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~---~~~~~~~~~~~i~~~~~i~~~~~~~v~~~-~g~~i~~D~v  189 (227)
                      +.+.+|+|+|||.|+||+|++.+++..+++|++..+.   .......+..++.+.+.|..+.+++..+. ++....+|.+
T Consensus       182 e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~i  261 (448)
T KOG1399|consen  182 EKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRI  261 (448)
T ss_pred             ccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceEEccccccccCcceEEEcCceeEEeeeE
Confidence            9999999999999999999999999999999988641   11122223445555556888888885554 4556789999


Q ss_pred             EEccccccccccccccCCccc
Q psy810          190 IYCTGAYKYSYKLTFLATFSI  210 (227)
Q Consensus       190 i~atG~~~~~~~~~~l~~~gl  210 (227)
                      |+||| +...+  +||++.++
T Consensus       262 i~ctg-y~y~f--Pfl~~~~~  279 (448)
T KOG1399|consen  262 IFCTG-YKYKF--PFLETLGL  279 (448)
T ss_pred             EEeee-eEeec--ceeccCCc
Confidence            99999 99999  99998885

>PRK06370 mercuric reductase; Validated

Probab=99.82  E-value=8.9e-20  Score=162.11  Aligned_cols=142  Identities=11%  Similarity=0.093  Sum_probs=100.1

Q ss_pred             EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810           64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN  143 (227)
Q Consensus        64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~  143 (227)
                      .++..+ +..+.||+||||||+  .|..|++||.+...  .+...+..+.. ..+++|+|||+|++|+|+|..|.+.+.+
T Consensus       123 ~~v~v~-~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~  196 (463)
T PRK06370        123 NTVRVG-GETLRAKRIFINTGA--RAAIPPIPGLDEVG--YLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSE  196 (463)
T ss_pred             CEEEEC-cEEEEeCEEEEcCCC--CCCCCCCCCCCcCc--eEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCe
Confidence            344443 357999999999999  89999999976421  23333333222 2478999999999999999999999999


Q ss_pred             EEEEeecCcccccc-----------C-CCce--EEcCCccEEeCC--c--eEEc--C-CCEEeccEEEEccccccccccc
Q psy810          144 VFLSHHISVAFKHQ-----------I-GDSV--VQKPDIKRLLQD--S--VVFQ--D-DTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       144 Vtli~~~~~~~~~~-----------~-~~~i--~~~~~i~~~~~~--~--v~~~--~-g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      |+|+++.+..+...           + ..++  ..+..+.++..+  +  +.+.  + +.++++|.||+|+| ++||+  
T Consensus       197 Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G-~~pn~--  273 (463)
T PRK06370        197 VTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVG-RVPNT--  273 (463)
T ss_pred             EEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcC-CCcCC--
Confidence            99999965433210           0 1233  345567777642  2  3332  2 34699999999999 99999  


Q ss_pred             c-c-cCCccccccc
Q psy810          203 T-F-LATFSISMAM  214 (227)
Q Consensus       203 ~-~-l~~~gl~~~~  214 (227)
                      . + +++.|++++.
T Consensus       274 ~~l~l~~~g~~~~~  287 (463)
T PRK06370        274 DDLGLEAAGVETDA  287 (463)
T ss_pred             CCcCchhhCceECC
Confidence            7 3 5777887764

>PLN02546 glutathione reductase

Probab=99.82  E-value=5.1e-20  Score=166.23  Aligned_cols=139  Identities=14%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeE
Q psy810           65 HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV  144 (227)
Q Consensus        65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~V  144 (227)
                      ++..+ ++.+.||+||||||+  .|..|++||.+..    +......+. ...+++|+|||+|++|+|+|..|.+++.+|
T Consensus       207 ~V~v~-G~~~~~D~LVIATGs--~p~~P~IpG~~~v----~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~~V  278 (558)
T PLN02546        207 TVDVD-GKLYTARNILIAVGG--RPFIPDIPGIEHA----IDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKSDV  278 (558)
T ss_pred             EEEEC-CEEEECCEEEEeCCC--CCCCCCCCChhhc----cCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCCeE
Confidence            44443 457999999999999  8899999996531    222111111 225789999999999999999999999999


Q ss_pred             EEEeecCccccccCC-------------CceEE--cCCccEEeC--Cc-e--EEcCCCEEeccEEEEccccccccccccc
Q psy810          145 FLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLLQ--DS-V--VFQDDTSHPFDSIIYCTGAYKYSYKLTF  204 (227)
Q Consensus       145 tli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~~--~~-v--~~~~g~~i~~D~vi~atG~~~~~~~~~~  204 (227)
                      ||+++.+..+. .++             .+|++  +..+.++..  ++ +  .+.++....+|.||+|+| ++||+  .+
T Consensus       279 tlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G-~~Pnt--~~  354 (558)
T PLN02546        279 HVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATG-RKPNT--KN  354 (558)
T ss_pred             EEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeec-cccCC--Cc
Confidence            99998554332 121             23443  455667753  22 3  334444456899999999 99999  86


Q ss_pred             --cCCcccccccC
Q psy810          205 --LATFSISMAMS  215 (227)
Q Consensus       205 --l~~~gl~~~~~  215 (227)
                        |++.|++++..
T Consensus       355 L~le~~gl~~d~~  367 (558)
T PLN02546        355 LGLEEVGVKMDKN  367 (558)
T ss_pred             CChhhcCCcCCCC
Confidence              57888888753

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.81  E-value=1.2e-19  Score=161.33  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=103.6

Q ss_pred             CcEEEecCCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ....+.+.++.  .+.||+||+|||+  .|..|+.++.+.  ...+++....+... .+++++|||+|.+|+|+|..|++
T Consensus       124 ~~v~V~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~--~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~  198 (466)
T PRK07845        124 HRVKVTTADGGEETLDADVVLIATGA--SPRILPTAEPDG--ERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTE  198 (466)
T ss_pred             CEEEEEeCCCceEEEecCEEEEcCCC--CCCCCCCCCCCC--ceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHH
Confidence            45666655543  7999999999999  777766654321  12344444433333 36899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccC------------CCceE--EcCCccEEeC--Cc--eEEcCCCEEeccEEEEcccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQI------------GDSVV--QKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYK  201 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~------------~~~i~--~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~  201 (227)
                      ++.+||++++.+..+....            ..+|.  .+..+.+++.  ++  +.+.+|+++++|.||+|+| ++||+ 
T Consensus       199 ~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G-~~pn~-  276 (466)
T PRK07845        199 LGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVG-SVPNT-  276 (466)
T ss_pred             cCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeec-CCcCC-
Confidence            9999999998554332211            12343  3456777742  33  5567888999999999999 99999 


Q ss_pred             ccc--cCCcccccccC
Q psy810          202 LTF--LATFSISMAMS  215 (227)
Q Consensus       202 ~~~--l~~~gl~~~~~  215 (227)
                       .+  |++.+++++..
T Consensus       277 -~~l~l~~~gl~~~~~  291 (466)
T PRK07845        277 -AGLGLEEAGVELTPS  291 (466)
T ss_pred             -CCCCchhhCceECCC
Confidence             75  67888888753

>TIGR02053 MerA mercuric reductase

Probab=99.81  E-value=1.2e-19  Score=161.24  Aligned_cols=143  Identities=12%  Similarity=0.181  Sum_probs=100.2

Q ss_pred             EEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810           64 LHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        64 ~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~  142 (227)
                      +++...++ ..+.+|+||||||+  .|..|++||.+...  .++......... .+++++|||+|.+|+|+|..|.+.+.
T Consensus       116 ~~v~v~~g~~~~~~~~lIiATGs--~p~~p~i~G~~~~~--~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~  190 (463)
T TIGR02053       116 KTVKVDLGREVRGAKRFLIATGA--RPAIPPIPGLKEAG--YLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGS  190 (463)
T ss_pred             CEEEEcCCeEEEEeCEEEEcCCC--CCCCCCCCCcccCc--eECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            45555443 46899999999999  88999999976532  232222222222 35899999999999999999999999


Q ss_pred             eEEEEeecCcccccc-----------C-CCceE--EcCCccEEeCC--c--eEEcC---CCEEeccEEEEcccccccccc
Q psy810          143 NVFLSHHISVAFKHQ-----------I-GDSVV--QKPDIKRLLQD--S--VVFQD---DTSHPFDSIIYCTGAYKYSYK  201 (227)
Q Consensus       143 ~Vtli~~~~~~~~~~-----------~-~~~i~--~~~~i~~~~~~--~--v~~~~---g~~i~~D~vi~atG~~~~~~~  201 (227)
                      +||++++.+..+...           + ..+|+  .+..|.++..+  .  +.+.+   +.++++|.||+|+| ++|++ 
T Consensus       191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G-~~p~~-  268 (463)
T TIGR02053       191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATG-RRPNT-  268 (463)
T ss_pred             cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeEC-CCcCC-
Confidence            999999965433210           0 11333  34557777543  2  34432   35799999999999 99999 


Q ss_pred             cc-c-cCCccccccc
Q psy810          202 LT-F-LATFSISMAM  214 (227)
Q Consensus       202 ~~-~-l~~~gl~~~~  214 (227)
                       . + ++..+++++.
T Consensus       269 -~~l~l~~~g~~~~~  282 (463)
T TIGR02053       269 -DGLGLEKAGVKLDE  282 (463)
T ss_pred             -CCCCccccCCEECC
Confidence             7 3 6777887764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.81  E-value=1.4e-19  Score=159.87  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=120.5

Q ss_pred             CCCCchhhhhhhcCCCCCCchhhhhhcCC---cceE----eeecccceeEEeCceEEEEEEeeCCCCcEEEec-CCeeEE
Q psy810            3 LTPSCLPSVLTTYNSEALQPIRKLRESQP---TNFI----SIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEITLH   74 (227)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~---~~~~----~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~~~~   74 (227)
                      +|.||||+|.+.+..+....+.++.....   ..+.    ..-...+++++.+.. ..++     .....+.. ++...+
T Consensus        44 ~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~-~~~~-----~~~v~v~~~~~~~~~  117 (438)
T PRK07251         44 INIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEA-HFVS-----NKVIEVQAGDEKIEL  117 (438)
T ss_pred             ecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-----CCEEEEeeCCCcEEE
Confidence            68899999998877654433333322110   0000    000112233332221 1110     12222332 223579


Q ss_pred             EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810           75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus        75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      .||+||||||+  .|..|++||.+.... .+.+....... ..+++|+|||+|++|+|+|..+++.+.+|+++++.+..+
T Consensus       118 ~~d~vViATGs--~~~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  193 (438)
T PRK07251        118 TAETIVINTGA--VSNVLPIPGLADSKH-VYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL  193 (438)
T ss_pred             EcCEEEEeCCC--CCCCCCCCCcCCCCc-EEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            99999999999  889999999754321 22222222222 247899999999999999999999999999999965433


Q ss_pred             cccC------------CCceE--EcCCccEEeCC--ce-EEcCCCEEeccEEEEcccccccccccccc--CCccccccc
Q psy810          155 KHQI------------GDSVV--QKPDIKRLLQD--SV-VFQDDTSHPFDSIIYCTGAYKYSYKLTFL--ATFSISMAM  214 (227)
Q Consensus       155 ~~~~------------~~~i~--~~~~i~~~~~~--~v-~~~~g~~i~~D~vi~atG~~~~~~~~~~l--~~~gl~~~~  214 (227)
                      ....            ..+|.  .+..+.++..+  .+ ...+|+++++|.+|+|+| ++|++  ..+  +..+++++.
T Consensus       194 ~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G-~~p~~--~~l~l~~~~~~~~~  269 (438)
T PRK07251        194 PREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATG-RKPNT--EPLGLENTDIELTE  269 (438)
T ss_pred             CCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeC-CCCCc--ccCCchhcCcEECC
Confidence            2111            11333  34567777543  33 334677899999999999 99999  654  445665543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.81  E-value=2.9e-19  Score=157.75  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=116.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecC---CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANE---EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~---~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~----  113 (227)
                      .+++++++++|.+|+..+   ....+...   +...+.||+||||||+  .|..|++++...     +....+.+.    
T Consensus        71 ~~i~v~~~~~V~~Id~~~---~~v~~~~~~~~~~~~~~yd~lviAtGs--~~~~~~~~~~~~-----~~~~~~~~~~~l~  140 (438)
T PRK13512         71 KQITVKTYHEVIAINDER---QTVTVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDIT-----FTLRNLEDTDAID  140 (438)
T ss_pred             CCCEEEeCCEEEEEECCC---CEEEEEECCCCcEEeeecCEEEECCCC--CCCCCCCCCCCe-----EEecCHHHHHHHH
Confidence            456788889999987522   33444332   2235799999999999  888777654221     111111111    


Q ss_pred             ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc
Q psy810          114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS  175 (227)
Q Consensus       114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~  175 (227)
                         ....+++++|||+|++|+|+|..|++.+.+|||+++.+..+ ..++             .  ++..+..+.++++..
T Consensus       141 ~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~  219 (438)
T PRK13512        141 QFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN-KLMDADMNQPILDELDKREIPYRLNEEIDAINGNE  219 (438)
T ss_pred             HHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc-hhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE
Confidence               12246899999999999999999999999999999854322 1121             1  334456788888777


Q ss_pred             eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          176 VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       176 v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                      +++.+|+.+++|.|++|+| ++||+  ++|++.|++++..
T Consensus       220 v~~~~g~~~~~D~vl~a~G-~~pn~--~~l~~~gl~~~~~  256 (438)
T PRK13512        220 VTFKSGKVEHYDMIIEGVG-THPNS--KFIESSNIKLDDK  256 (438)
T ss_pred             EEECCCCEEEeCEEEECcC-CCcCh--HHHHhcCcccCCC
Confidence            8888899999999999999 99999  9999999888653

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.80  E-value=6.5e-19  Score=155.69  Aligned_cols=146  Identities=13%  Similarity=0.140  Sum_probs=103.2

Q ss_pred             CcEEEecCCee-EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           62 KCLHFANEEIT-LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        62 ~~~~v~~~~~~-~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      +.+.+.+.++. .+.||+||||||+  .|..|++||.+.+.+ .++...+.... ..+++++|||+|.+|+|+|..|.+.
T Consensus       105 ~~~~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~  180 (441)
T PRK08010        105 HSLRVHRPEGNLEIHGEKIFINTGA--QTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANF  180 (441)
T ss_pred             CEEEEEeCCCeEEEEeCEEEEcCCC--cCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHC
Confidence            55666665553 6999999999999  889999999765433 23332233322 3468999999999999999999999


Q ss_pred             cCeEEEEeecCcccccc-----------C-CCce--EEcCCccEEeCC--ceEEc-CCCEEeccEEEEcccccccccccc
Q psy810          141 AKNVFLSHHISVAFKHQ-----------I-GDSV--VQKPDIKRLLQD--SVVFQ-DDTSHPFDSIIYCTGAYKYSYKLT  203 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~-----------~-~~~i--~~~~~i~~~~~~--~v~~~-~g~~i~~D~vi~atG~~~~~~~~~  203 (227)
                      +.+|||+++.+..+...           + ..+|  ..+..+.++..+  .+.+. ++.++++|.|++|+| ..||+  .
T Consensus       181 g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G-~~pn~--~  257 (441)
T PRK08010        181 GSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASG-RQPAT--A  257 (441)
T ss_pred             CCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeec-CCcCC--C
Confidence            99999999854333211           0 1133  335567777542  34332 334689999999999 99999  7


Q ss_pred             c--cCCccccccc
Q psy810          204 F--LATFSISMAM  214 (227)
Q Consensus       204 ~--l~~~gl~~~~  214 (227)
                      +  +...|++++.
T Consensus       258 ~l~~~~~gl~~~~  270 (441)
T PRK08010        258 SLHPENAGIAVNE  270 (441)
T ss_pred             CcCchhcCcEECC
Confidence            6  4577787764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.80  E-value=2.8e-19  Score=168.00  Aligned_cols=162  Identities=14%  Similarity=0.189  Sum_probs=123.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~  115 (227)
                      .+++++.+++|.+|+.     ....|.+.++..+.||+||||||+  .|..|++||.+...  ++.+..+.+..     .
T Consensus        72 ~gI~~~~g~~V~~Id~-----~~~~V~~~~G~~i~yD~LVIATGs--~p~~p~ipG~~~~~--v~~~rt~~d~~~l~~~~  142 (847)
T PRK14989         72 HGIKVLVGERAITINR-----QEKVIHSSAGRTVFYDKLIMATGS--YPWIPPIKGSETQD--CFVYRTIEDLNAIEACA  142 (847)
T ss_pred             CCCEEEcCCEEEEEeC-----CCcEEEECCCcEEECCEEEECCCC--CcCCCCCCCCCCCC--eEEECCHHHHHHHHHHH
Confidence            4678888999998875     446677777888999999999999  88999999976421  22222222221     1


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC------
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD------  174 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~------  174 (227)
                      ..+++++|||||.+|+|+|..|.+.|.+|+++++.+..+...++             .  ++..+..+.++.++      
T Consensus       143 ~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~  222 (847)
T PRK14989        143 RRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARK  222 (847)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceE
Confidence            24789999999999999999999999999999985543332222             1  33445667777532      


Q ss_pred             ceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          175 SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       175 ~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      .+.+.||+++++|.||+|+| ++||.  .++.+.|++++.
T Consensus       223 ~v~~~dG~~i~~D~Vv~A~G-~rPn~--~L~~~~Gl~~~~  259 (847)
T PRK14989        223 TMRFADGSELEVDFIVFSTG-IRPQD--KLATQCGLAVAP  259 (847)
T ss_pred             EEEECCCCEEEcCEEEECCC-cccCc--hHHhhcCccCCC
Confidence            36788999999999999999 99999  888899998875

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.80  E-value=1e-18  Score=146.22  Aligned_cols=162  Identities=15%  Similarity=0.194  Sum_probs=121.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++++ ++|.+++..+   +.|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..++++..++....++++|
T Consensus        71 gv~~~~-~~v~~v~~~~---~~~~v~~~~~~~~~~d~liiAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v  144 (300)
T TIGR01292        71 GAEIIY-EEVIKVDLSD---RPFKVKTGDGKEYTAKAVIIATGA--SARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEV  144 (300)
T ss_pred             CCeEEE-EEEEEEEecC---CeeEEEeCCCCEEEeCEEEECCCC--CcccCCCCChhhcCCccEEEeeecChhhcCCCEE
Confidence            456777 7888887532   568888777778999999999999  7888899997766556666665555555678999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccC-CC-ceEE--cCCccEEeCCc----eEEc---CC--CE
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQI-GD-SVVQ--KPDIKRLLQDS----VVFQ---DD--TS  183 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~-~~-~i~~--~~~i~~~~~~~----v~~~---~g--~~  183 (227)
                      +|+|+|++|+|+|..|.+.+.+|+++++++....     ..+ .. ++++  ...+.++..++    +++.   +|  .+
T Consensus       145 ~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~  224 (300)
T TIGR01292       145 AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEE  224 (300)
T ss_pred             EEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEE
Confidence            9999999999999999999999999999542210     011 12 4443  45677776543    4443   23  46


Q ss_pred             EeccEEEEccccccccccccccCCcccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      +++|.+|+|+| ++|+.  +++..+ ++++
T Consensus       225 i~~D~vi~a~G-~~~~~--~~l~~~-~~~~  250 (300)
T TIGR01292       225 LKVDGVFIAIG-HEPNT--ELLKGL-LELD  250 (300)
T ss_pred             EEccEEEEeeC-CCCCh--HHHHHh-heec
Confidence            89999999999 99999  899877 6554

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14694 putative mercuric reductase; Provisional

Probab=99.79  E-value=6.8e-19  Score=156.67  Aligned_cols=143  Identities=9%  Similarity=0.113  Sum_probs=100.3

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      +.+.+.+.++  ..++||+||||||+  .|..|++||.+...  .++....... ...+++++|||+|++|+|+|..|.+
T Consensus       125 ~~~~V~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~  199 (468)
T PRK14694        125 RTLTVTLNDGGEQTVHFDRAFIGTGA--RPAEPPVPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFAR  199 (468)
T ss_pred             CEEEEEecCCCeEEEECCEEEEeCCC--CCCCCCCCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHH
Confidence            5688876654  47999999999999  88999999976532  2222211111 1236899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccC------------CCce--EEcCCccEEeCCc--eEE-cCCCEEeccEEEEccccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQI------------GDSV--VQKPDIKRLLQDS--VVF-QDDTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~------------~~~i--~~~~~i~~~~~~~--v~~-~~g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      ++.+||++.+ +..+....            ..+|  ..+..+.++..++  +.+ .++.++++|.||+|+| ..||+  
T Consensus       200 ~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G-~~pn~--  275 (468)
T PRK14694        200 LGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATG-RTPNT--  275 (468)
T ss_pred             cCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccC-CCCCc--
Confidence            9999999987 43332110            1133  3455677775432  222 2455799999999999 99999  


Q ss_pred             ccc--CCcccccc
Q psy810          203 TFL--ATFSISMA  213 (227)
Q Consensus       203 ~~l--~~~gl~~~  213 (227)
                      .++  +..+++.+
T Consensus       276 ~~l~l~~~g~~~~  288 (468)
T PRK14694        276 ENLNLESIGVETE  288 (468)
T ss_pred             CCCCchhcCcccC
Confidence            765  45666543

>PTZ00058 glutathione reductase; Provisional

Probab=99.79  E-value=7.5e-19  Score=158.65  Aligned_cols=129  Identities=12%  Similarity=0.273  Sum_probs=93.4

Q ss_pred             CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEe
Q psy810           69 EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH  148 (227)
Q Consensus        69 ~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~  148 (227)
                      +++..+.||+||||||+  .|..|++||.+.    .+.+..+.....  +++|+|||+|++|+|+|..+.++|.+||+++
T Consensus       196 ~~g~~i~ad~lVIATGS--~P~~P~IpG~~~----v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~  267 (561)
T PTZ00058        196 DDGQVIEGKNILIAVGN--KPIFPDVKGKEF----TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFA  267 (561)
T ss_pred             CCCcEEECCEEEEecCC--CCCCCCCCCcee----EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence            45567999999999999  889999999642    233333332222  7899999999999999999999999999999


Q ss_pred             ecCccccccCC-------------Cc--eEEcCCccEEeCC---c--eEEcCC-CEEeccEEEEccccccccccccccCC
Q psy810          149 HISVAFKHQIG-------------DS--VVQKPDIKRLLQD---S--VVFQDD-TSHPFDSIIYCTGAYKYSYKLTFLAT  207 (227)
Q Consensus       149 ~~~~~~~~~~~-------------~~--i~~~~~i~~~~~~---~--v~~~~g-~~i~~D~vi~atG~~~~~~~~~~l~~  207 (227)
                      +.+..+. .++             .+  +..+..+.++.++   +  +.+.++ +++++|.||+|+| ++||+  .+|..
T Consensus       268 ~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~G-r~Pn~--~~L~l  343 (561)
T PTZ00058        268 RGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVG-RSPNT--EDLNL  343 (561)
T ss_pred             ecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcC-CCCCc--cccCc
Confidence            9654332 121             13  3345567777642   2  333444 4699999999999 99999  87754


Q ss_pred             cc
Q psy810          208 FS  209 (227)
Q Consensus       208 ~g  209 (227)
                      .+
T Consensus       344 ~~  345 (561)
T PTZ00058        344 KA  345 (561)
T ss_pred             cc
Confidence            33

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.79  E-value=9.9e-19  Score=163.91  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=123.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~  115 (227)
                      .+++++++++|.+|+.     ..+.|.+.++..+.||+||||||+  .|+.|++||.+.. + ++.+....+..     .
T Consensus        67 ~gv~~~~g~~V~~Id~-----~~k~V~~~~g~~~~yD~LVlATGs--~p~~p~ipG~~~~-~-v~~~rt~~d~~~i~~~~  137 (785)
T TIGR02374        67 HGITLYTGETVIQIDT-----DQKQVITDAGRTLSYDKLILATGS--YPFILPIPGADKK-G-VYVFRTIEDLDAIMAMA  137 (785)
T ss_pred             CCCEEEcCCeEEEEEC-----CCCEEEECCCcEeeCCEEEECCCC--CcCCCCCCCCCCC-C-EEEeCCHHHHHHHHHHh
Confidence            4678899999999875     456788888888999999999999  8899999997642 2 22222222211     1


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC----ce
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD----SV  176 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~----~v  176 (227)
                      ..+++++|||||.+|+|+|..|.+.|.+|+++++.+..+...++             .  ++..+..+.++.++    ++
T Consensus       138 ~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v  217 (785)
T TIGR02374       138 QRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRI  217 (785)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEE
Confidence            24689999999999999999999999999999986544332222             1  34445667777543    37


Q ss_pred             EEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      .+.||+++++|+||+|+| ++||.  .++.+.+|+++
T Consensus       218 ~~~dG~~i~~D~Vi~a~G-~~Pn~--~la~~~gl~~~  251 (785)
T TIGR02374       218 RFKDGSSLEADLIVMAAG-IRPND--ELAVSAGIKVN  251 (785)
T ss_pred             EECCCCEEEcCEEEECCC-CCcCc--HHHHhcCCccC
Confidence            889999999999999999 99999  88888888775

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.79  E-value=3.2e-18  Score=154.03  Aligned_cols=165  Identities=13%  Similarity=0.126  Sum_probs=127.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .+++++++++|.++...+   +.|.+.+.++..+.||.||+|||+  .|+.|++||.+.+.+..++++..++...+++++
T Consensus       279 ~gv~i~~~~~V~~I~~~~---~~~~V~~~~g~~i~a~~vViAtG~--~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~  353 (517)
T PRK15317        279 YDVDIMNLQRASKLEPAA---GLIEVELANGAVLKAKTVILATGA--RWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKR  353 (517)
T ss_pred             CCCEEEcCCEEEEEEecC---CeEEEEECCCCEEEcCEEEECCCC--CcCCCCCCCHHHhcCceEEEeeccCchhcCCCE
Confidence            356788899999987632   578888777778999999999999  778889999877777778887777776678999


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccCC--CceEE--cCCccEEeCC-----ceEEc---CCC-
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQIG--DSVVQ--KPDIKRLLQD-----SVVFQ---DDT-  182 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~~--~~i~~--~~~i~~~~~~-----~v~~~---~g~-  182 (227)
                      |+|||+|++|+|+|..|...+++||++.+++....     ..+.  .+|.+  ...+.++.++     ++++.   +|. 
T Consensus       354 VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~  433 (517)
T PRK15317        354 VAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE  433 (517)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE
Confidence            99999999999999999999999999998543211     1111  23443  4556677654     24554   343 


Q ss_pred             -EEeccEEEEccccccccccccccCCccccccc
Q psy810          183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       ++++|.+++|+| ++||+  .|++.. ++++.
T Consensus       434 ~~i~~D~v~~~~G-~~p~~--~~l~~~-v~~~~  462 (517)
T PRK15317        434 HHLELEGVFVQIG-LVPNT--EWLKGT-VELNR  462 (517)
T ss_pred             EEEEcCEEEEeEC-CccCc--hHHhhh-eeeCC
Confidence             489999999999 99999  999876 66654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.78  E-value=6.4e-19  Score=156.52  Aligned_cols=144  Identities=13%  Similarity=0.116  Sum_probs=103.2

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+.+.++  ..+.||+||||||+  .|..|++++.+..  ..+++....... ..+++++|||+|++|+|+|..|++
T Consensus       122 ~~~~v~~~~g~~~~~~~d~lviATGs--~p~~p~~~~~~~~--~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~  196 (461)
T PRK05249        122 HTVEVECPDGEVETLTADKIVIATGS--RPYRPPDVDFDHP--RIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAA  196 (461)
T ss_pred             CEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCCC--eEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHH
Confidence            4566665544  47999999999999  8888887764321  123332232222 347999999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEe--CCc--eEEcCCCEEeccEEEEccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLL--QDS--VVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~--~~~--v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+.+|||+++++..+.. ++             .++  .....+.++.  +++  +++.+|+++++|.||+|+| .+||+
T Consensus       197 ~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G-~~p~~  274 (461)
T PRK05249        197 LGVKVTLINTRDRLLSF-LDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANG-RTGNT  274 (461)
T ss_pred             cCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeec-CCccc
Confidence            99999999996543321 11             133  3455677775  333  4566788899999999999 99999


Q ss_pred             cccc--cCCccccccc
Q psy810          201 KLTF--LATFSISMAM  214 (227)
Q Consensus       201 ~~~~--l~~~gl~~~~  214 (227)
                        .+  ++..+++++.
T Consensus       275 --~~l~l~~~g~~~~~  288 (461)
T PRK05249        275 --DGLNLENAGLEADS  288 (461)
T ss_pred             --cCCCchhhCcEecC
Confidence              74  5777888764

>PRK10262 thioredoxin reductase; Provisional

Probab=99.78  E-value=4.6e-18  Score=144.30  Aligned_cols=153  Identities=12%  Similarity=0.199  Sum_probs=115.1

Q ss_pred             eEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCcc
Q psy810           50 SWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPS  129 (227)
Q Consensus        50 ~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~  129 (227)
                      +|..|+..   .+.|.+..+.+ .+.||+||+|||+  .|+.|++||.+.+.+..++++.+++.....+++|+|||+|++
T Consensus        84 ~v~~v~~~---~~~~~v~~~~~-~~~~d~vilAtG~--~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~  157 (321)
T PRK10262         84 HINKVDLQ---NRPFRLTGDSG-EYTCDALIIATGA--SARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNT  157 (321)
T ss_pred             EEEEEEec---CCeEEEEecCC-EEEECEEEECCCC--CCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHH
Confidence            45555542   26677766544 6899999999999  788999999877777778888888777778999999999999


Q ss_pred             HHHHHHHHHhccCeEEEEeecCccccc----------cC-CCceEE--cCCccEEeCC-----ceEEcCC------CEEe
Q psy810          130 GVDIAMDIEKVAKNVFLSHHISVAFKH----------QI-GDSVVQ--KPDIKRLLQD-----SVVFQDD------TSHP  185 (227)
Q Consensus       130 g~e~a~~l~~~~~~Vtli~~~~~~~~~----------~~-~~~i~~--~~~i~~~~~~-----~v~~~~g------~~i~  185 (227)
                      |+|+|..|++.+++||+++|++. +..          .+ ..+|.+  +..+.++.++     ++++.++      ++++
T Consensus       158 g~e~A~~l~~~~~~Vtlv~~~~~-~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~  236 (321)
T PRK10262        158 AVEEALYLSNIASEVHLIHRRDG-FRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD  236 (321)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCc-cCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence            99999999999999999999542 211          11 123443  4567788654     2556543      3689


Q ss_pred             ccEEEEccccccccccccccCCcccccc
Q psy810          186 FDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       186 ~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      +|.||+++| ++||.  .++.. +++++
T Consensus       237 ~D~vv~a~G-~~p~~--~l~~~-~l~~~  260 (321)
T PRK10262        237 VAGLFVAIG-HSPNT--AIFEG-QLELE  260 (321)
T ss_pred             CCEEEEEeC-CccCh--hHhhc-ccccc
Confidence            999999999 99999  77653 45553

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.78  E-value=2.3e-18  Score=151.58  Aligned_cols=164  Identities=18%  Similarity=0.230  Sum_probs=117.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecC-CeeEEE--cCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANE-EITLHY--NLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~-~~~~~~--~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~----  113 (227)
                      .+++++++++|.+++..+   ..+.+... ++..+.  ||+||||||+  .|..|++||.+.-  ..+......+.    
T Consensus        57 ~gv~~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lIiATG~--~p~~~~i~G~~~~--~v~~~~~~~~~~~~~  129 (427)
T TIGR03385        57 RGIDVKTNHEVIEVNDER---QTVVVRNNKTNETYEESYDYLILSPGA--SPIVPNIEGINLD--IVFTLRNLEDTDAIK  129 (427)
T ss_pred             cCCeEEecCEEEEEECCC---CEEEEEECCCCCEEecCCCEEEECCCC--CCCCCCCCCcCCC--CEEEECCHHHHHHHH
Confidence            356777889999887522   34444432 244677  9999999999  8899999996521  12222221111    


Q ss_pred             ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCCc
Q psy810          114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQDS  175 (227)
Q Consensus       114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~~  175 (227)
                         ....+++|+|||+|++|+|+|..|++.+.+|+++.+.+..+...++             .+|  ..+..+.++..++
T Consensus       130 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~  209 (427)
T TIGR03385       130 QYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE  209 (427)
T ss_pred             HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC
Confidence               1235789999999999999999999999999999985543222121             133  3355677886654


Q ss_pred             --eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 --VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 --v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                        +.+.+|+++++|.+|+|+| ++|++  +++++++++++.
T Consensus       210 ~~v~~~~g~~i~~D~vi~a~G-~~p~~--~~l~~~gl~~~~  247 (427)
T TIGR03385       210 RVKVFTSGGVYQADMVILATG-IKPNS--ELAKDSGLKLGE  247 (427)
T ss_pred             CEEEEcCCCEEEeCEEEECCC-ccCCH--HHHHhcCcccCC
Confidence              3678899999999999999 99999  999999998874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.78  E-value=4.1e-18  Score=153.29  Aligned_cols=165  Identities=13%  Similarity=0.136  Sum_probs=123.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .+++++.+++|.++...+   +.+.+.+.++..+.||++|+|||+  .|+.|++||.+.+.+..++++..++.....+++
T Consensus       280 ~gv~i~~~~~V~~I~~~~---~~~~v~~~~g~~i~~d~lIlAtGa--~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~  354 (515)
T TIGR03140       280 YPIDLMENQRAKKIETED---GLIVVTLESGEVLKAKSVIVATGA--RWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKD  354 (515)
T ss_pred             hCCeEEcCCEEEEEEecC---CeEEEEECCCCEEEeCEEEECCCC--CcCCCCCCCHHHcCCCeEEEeeccChhhcCCCE
Confidence            356888899999887522   467787777778999999999999  778889999755555566666566655567899


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccCC--CceE--EcCCccEEeCC-----ceEEcC---C--
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQIG--DSVV--QKPDIKRLLQD-----SVVFQD---D--  181 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~~--~~i~--~~~~i~~~~~~-----~v~~~~---g--  181 (227)
                      |+|||||++|+|+|..|++.+.+||++++.+....     ..+.  .+|.  .+..+.++.++     ++++.+   |  
T Consensus       355 VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~  434 (515)
T TIGR03140       355 VAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEE  434 (515)
T ss_pred             EEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcE
Confidence            99999999999999999999999999988543211     1111  2344  35567777654     256654   2  


Q ss_pred             CEEeccEEEEccccccccccccccCCccccccc
Q psy810          182 TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       182 ~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      ..+++|.||+|+| ..||+  .|+... ++++.
T Consensus       435 ~~i~~D~vi~a~G-~~Pn~--~~l~~~-~~~~~  463 (515)
T TIGR03140       435 KQLDLDGVFVQIG-LVPNT--EWLKDA-VELNR  463 (515)
T ss_pred             EEEEcCEEEEEeC-CcCCc--hHHhhh-cccCC
Confidence            3589999999999 99999  999765 66653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1336|consensus

Probab=99.78  E-value=2.9e-18  Score=147.35  Aligned_cols=199  Identities=16%  Similarity=0.129  Sum_probs=143.0

Q ss_pred             hhhhhcCCCCCCchhhhh-----hcCCcceEe----eecccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEE
Q psy810           10 SVLTTYNSEALQPIRKLR-----ESQPTNFIS----IAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQS   80 (227)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~----~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vi   80 (227)
                      .+++..+.+.+.|+++-|     .....++..    +--+..++.++++.|++++-     ...++.+++|+.+.|++++
T Consensus       100 ~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~-----~~K~l~~~~Ge~~kys~Li  174 (478)
T KOG1336|consen  100 ERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADL-----ASKTLVLGNGETLKYSKLI  174 (478)
T ss_pred             cceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeec-----cccEEEeCCCceeecceEE
Confidence            445566667777776622     222222211    11245778999999999875     5678889999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCcccceeeecC-CCCCCC-----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810           81 LPSSHNSVPNIPSYEGADLFRGLQMHSH-DYRVPD-----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus        81 lAtG~~~~p~~p~~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      ||||+  .|+.|++||.+.   +.+++. +..+..     .-.+.+|+++|+|++|+|+|..|...+.+||++++.+-++
T Consensus       175 lATGs--~~~~l~~pG~~~---~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~  249 (478)
T KOG1336|consen  175 IATGS--SAKTLDIPGVEL---KNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL  249 (478)
T ss_pred             EeecC--ccccCCCCCccc---cceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccch
Confidence            99999  899999999863   223322 222221     1126789999999999999999999999999999965444


Q ss_pred             cccCCC---------------ceEEcCCccEEeCCc------eEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          155 KHQIGD---------------SVVQKPDIKRLLQDS------VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       155 ~~~~~~---------------~i~~~~~i~~~~~~~------v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ...+..               ++.+.+.+.++..+.      |.+.||+++++|.|++++| .+|++  +|++. +.-++
T Consensus       250 ~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG-~~p~t--~~~~~-g~~~~  325 (478)
T KOG1336|consen  250 PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG-IKPNT--SFLEK-GILLD  325 (478)
T ss_pred             hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec-ccccc--ccccc-cceec
Confidence            332221               445566777776532      8889999999999999999 99999  99997 65555


Q ss_pred             cCCCCCCCCCCC
Q psy810          214 MSTPDGPNPTSR  225 (227)
Q Consensus       214 ~~~~~~~~~~~~  225 (227)
                      ..   |++++..
T Consensus       326 ~~---G~i~V~~  334 (478)
T KOG1336|consen  326 SK---GGIKVDE  334 (478)
T ss_pred             cc---CCEeehh
Confidence            44   6666554

>PRK13748 putative mercuric reductase; Provisional

Probab=99.78  E-value=2.7e-18  Score=155.99  Aligned_cols=145  Identities=10%  Similarity=0.121  Sum_probs=100.4

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+.+.++  ..+.||+||||||+  .|.+|++||.+...  .+....... ....+++++|||+|++|+|+|..|.+
T Consensus       217 ~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~  291 (561)
T PRK13748        217 QTLIVRLNDGGERVVAFDRCLIATGA--SPAVPPIPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFAR  291 (561)
T ss_pred             CEEEEEeCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHH
Confidence            4566665443  47999999999999  89999999976421  122111111 12346899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccC------------CCceE--EcCCccEEeC--CceEE-cCCCEEeccEEEEccccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQI------------GDSVV--QKPDIKRLLQ--DSVVF-QDDTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~------------~~~i~--~~~~i~~~~~--~~v~~-~~g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      ++.+|||+++. ..+....            ...|+  .+..+.++..  +.+.+ .++.++++|.||+|+| +.||+  
T Consensus       292 ~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G-~~pn~--  367 (561)
T PRK13748        292 LGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATG-RAPNT--  367 (561)
T ss_pred             cCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccC-CCcCC--
Confidence            99999999983 3332110            11333  3556777753  22322 2334799999999999 99999  


Q ss_pred             cc--cCCcccccccC
Q psy810          203 TF--LATFSISMAMS  215 (227)
Q Consensus       203 ~~--l~~~gl~~~~~  215 (227)
                      .+  |++.|++++..
T Consensus       368 ~~l~l~~~g~~~~~~  382 (561)
T PRK13748        368 RSLALDAAGVTVNAQ  382 (561)
T ss_pred             CCcCchhcCceECCC
Confidence            75  57788888753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.77  E-value=1.8e-18  Score=150.01  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=117.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC-----CCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV-----PDP  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-----~~~  115 (227)
                      .+++++++++|.+++.     ..+.+.++ +..+.||+||||||+  .|..|++||.+.    .+....+.+     ...
T Consensus        71 ~gv~~~~~~~V~~id~-----~~~~v~~~-~~~~~yd~LVlATG~--~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~  138 (377)
T PRK04965         71 FNLRLFPHTWVTDIDA-----EAQVVKSQ-GNQWQYDKLVLATGA--SAFVPPIPGREL----MLTLNSQQEYRAAETQL  138 (377)
T ss_pred             CCCEEECCCEEEEEEC-----CCCEEEEC-CeEEeCCEEEECCCC--CCCCCCCCCCce----EEEECCHHHHHHHHHHh
Confidence            4678888999999875     33456654 457999999999999  889999999653    122111111     111


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCC----ce
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQD----SV  176 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~----~v  176 (227)
                      ..+++++|||+|++|+|+|..|.+.+.+|+++++.+..+...++             .++  .....+.++..+    .+
T Consensus       139 ~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v  218 (377)
T PRK04965        139 RDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRA  218 (377)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEE
Confidence            24689999999999999999999999999999986543322122             123  335667777653    26


Q ss_pred             EEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      .+.+|+++++|.||+|+| ..|++  .+++..|++.+.
T Consensus       219 ~~~~g~~i~~D~vI~a~G-~~p~~--~l~~~~gl~~~~  253 (377)
T PRK04965        219 TLDSGRSIEVDAVIAAAG-LRPNT--ALARRAGLAVNR  253 (377)
T ss_pred             EEcCCcEEECCEEEECcC-CCcch--HHHHHCCCCcCC
Confidence            778999999999999999 99999  888888887653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.77  E-value=2.5e-18  Score=153.46  Aligned_cols=132  Identities=16%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810           72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus        72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+.||+||||||+  +|..|++||.+..   .+.+.+...... .+++++|||+|++|+|+|..|++++.+||++.+ .
T Consensus       140 ~~~~~d~lVIATGs--~p~~p~ipG~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~  212 (484)
T TIGR01438       140 KIYSAERFLIATGE--RPRYPGIPGAKEL---CITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S  212 (484)
T ss_pred             eEEEeCEEEEecCC--CCCCCCCCCccce---eecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c
Confidence            57999999999999  8999999997442   122222222222 357899999999999999999999999999998 4


Q ss_pred             ccccccCC-------------CceE--EcCCccEEeC--Cc--eEEcCCC---EEeccEEEEccccccccccccc--cCC
Q psy810          152 VAFKHQIG-------------DSVV--QKPDIKRLLQ--DS--VVFQDDT---SHPFDSIIYCTGAYKYSYKLTF--LAT  207 (227)
Q Consensus       152 ~~~~~~~~-------------~~i~--~~~~i~~~~~--~~--v~~~~g~---~i~~D~vi~atG~~~~~~~~~~--l~~  207 (227)
                      ..++. ++             .+|.  .+..+.++..  +.  +++.+++   ++++|.||+|+| +.||+  .+  |++
T Consensus       213 ~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G-~~pn~--~~l~l~~  288 (484)
T TIGR01438       213 ILLRG-FDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIG-RDACT--RKLNLEN  288 (484)
T ss_pred             ccccc-cCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEec-CCcCC--CcCCccc
Confidence            33321 21             1333  3444555543  22  5565653   699999999999 99999  86  567


Q ss_pred             ccccccc
Q psy810          208 FSISMAM  214 (227)
Q Consensus       208 ~gl~~~~  214 (227)
                      .|++++.
T Consensus       289 ~gv~~~~  295 (484)
T TIGR01438       289 VGVKINK  295 (484)
T ss_pred             ccceecC
Confidence            7887763

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.77  E-value=1.8e-18  Score=154.29  Aligned_cols=144  Identities=10%  Similarity=0.085  Sum_probs=98.9

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+...++  ..+.||+||||||+  .|..|++||.+...  .+...+.... ...+++++|||+|++|+|+|..+.+
T Consensus       135 ~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~  209 (479)
T PRK14727        135 NTLVVRLHDGGERVLAADRCLIATGS--TPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYAR  209 (479)
T ss_pred             CEEEEEeCCCceEEEEeCEEEEecCC--CCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence            4566665444  47999999999999  89999999975421  1221111111 2246899999999999999999999


Q ss_pred             ccCeEEEEeecCcccccc-----------C-CCceE--EcCCccEEeC--CceEE-cCCCEEeccEEEEccccccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQ-----------I-GDSVV--QKPDIKRLLQ--DSVVF-QDDTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~-----------~-~~~i~--~~~~i~~~~~--~~v~~-~~g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      .|.+||++.+. ..+...           + ...|.  .+..+.++..  +++.+ .++.++++|.||+|+| +.||+  
T Consensus       210 ~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G-~~pn~--  285 (479)
T PRK14727        210 LGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTG-RHANT--  285 (479)
T ss_pred             cCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccC-CCCCc--
Confidence            99999999883 332210           0 11333  3456766652  33332 2334689999999999 99999  


Q ss_pred             cc--cCCccccccc
Q psy810          203 TF--LATFSISMAM  214 (227)
Q Consensus       203 ~~--l~~~gl~~~~  214 (227)
                      .+  ++..|++++.
T Consensus       286 ~~l~l~~~g~~~~~  299 (479)
T PRK14727        286 HDLNLEAVGVTTDT  299 (479)
T ss_pred             cCCCchhhCceecC
Confidence            76  4667787764

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.77  E-value=1.5e-18  Score=155.49  Aligned_cols=133  Identities=20%  Similarity=0.268  Sum_probs=96.1

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +..++||+||||||+  .|..|+ +||.+.+   .+.+.+...... .+++++|||+|++|+|+|..|++++.+||++++
T Consensus       140 ~~~i~~d~lIIATGs--~p~~p~~i~G~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~  213 (499)
T PTZ00052        140 EETITAKYILIATGG--RPSIPEDVPGAKEY---SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVR  213 (499)
T ss_pred             ceEEECCEEEEecCC--CCCCCCCCCCccce---eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence            457999999999999  888884 8886542   122222222222 357999999999999999999999999999987


Q ss_pred             cCccccccCC-------------CceEE--cCCccEEeC--C--ceEEcCCCEEeccEEEEcccccccccccccc--CCc
Q psy810          150 ISVAFKHQIG-------------DSVVQ--KPDIKRLLQ--D--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFL--ATF  208 (227)
Q Consensus       150 ~~~~~~~~~~-------------~~i~~--~~~i~~~~~--~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l--~~~  208 (227)
                       ...+.. ++             ..|.+  +..+.++..  +  .+.+.+|+++++|.||+|+| ++||+  .+|  +..
T Consensus       214 -~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G-~~pn~--~~l~l~~~  288 (499)
T PTZ00052        214 -SIPLRG-FDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATG-RKPDI--KGLNLNAI  288 (499)
T ss_pred             -Cccccc-CCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeC-CCCCc--cccCchhc
Confidence             333321 21             13333  444555643  2  25677888999999999999 99999  876  577


Q ss_pred             cccccc
Q psy810          209 SISMAM  214 (227)
Q Consensus       209 gl~~~~  214 (227)
                      +++++.
T Consensus       289 g~~~~~  294 (499)
T PTZ00052        289 GVHVNK  294 (499)
T ss_pred             CcEECC
Confidence            888764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.77  E-value=1.8e-18  Score=154.09  Aligned_cols=145  Identities=13%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCC-CCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPN-IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ....+...++  ..+.||+||||||+  +|. .|.+++...   ..+.+.+...... .+++++|||+|++|+|+|..|.
T Consensus       121 ~~v~v~~~~g~~~~~~~d~lViATGs--~p~~~p~~~~~~~---~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~  194 (471)
T PRK06467        121 NTLEVTGEDGKTTVIEFDNAIIAAGS--RPIQLPFIPHDDP---RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYH  194 (471)
T ss_pred             CEEEEecCCCceEEEEcCEEEEeCCC--CCCCCCCCCCCCC---cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHH
Confidence            3455555444  57999999999999  776 344554321   1233322222222 3689999999999999999999


Q ss_pred             hccCeEEEEeecCccccc-----------cCCCce--EEcCCccEEeC--Cc--eEEcCC----CEEeccEEEEcccccc
Q psy810          139 KVAKNVFLSHHISVAFKH-----------QIGDSV--VQKPDIKRLLQ--DS--VVFQDD----TSHPFDSIIYCTGAYK  197 (227)
Q Consensus       139 ~~~~~Vtli~~~~~~~~~-----------~~~~~i--~~~~~i~~~~~--~~--v~~~~g----~~i~~D~vi~atG~~~  197 (227)
                      +.|.+|||+++.+..+..           .+..++  ..+..+.+++.  ++  +.+.++    .++++|.||+|+| ++
T Consensus       195 ~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G-~~  273 (471)
T PRK06467        195 RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVG-RV  273 (471)
T ss_pred             HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeec-cc
Confidence            999999999985543321           111123  33456666652  33  334432    3599999999999 99


Q ss_pred             cccccccc--CCcccccccC
Q psy810          198 YSYKLTFL--ATFSISMAMS  215 (227)
Q Consensus       198 ~~~~~~~l--~~~gl~~~~~  215 (227)
                      ||+  .+|  ...+++++..
T Consensus       274 pn~--~~l~~~~~gl~~~~~  291 (471)
T PRK06467        274 PNG--KLLDAEKAGVEVDER  291 (471)
T ss_pred             ccC--CccChhhcCceECCC
Confidence            999  754  6677877643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.76  E-value=5.2e-18  Score=148.02  Aligned_cols=161  Identities=10%  Similarity=0.080  Sum_probs=116.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~  115 (227)
                      .+++++.++.|..++.     ..+.+.+.++..+.||+||||||+  .|+.|++++... . ..+......+..     -
T Consensus        71 ~~i~~~~g~~V~~id~-----~~~~v~~~~g~~~~yd~LViATGs--~~~~~p~~~~~~-~-~v~~~~~~~da~~l~~~~  141 (396)
T PRK09754         71 NNVHLHSGVTIKTLGR-----DTRELVLTNGESWHWDQLFIATGA--AARPLPLLDALG-E-RCFTLRHAGDAARLREVL  141 (396)
T ss_pred             CCCEEEcCCEEEEEEC-----CCCEEEECCCCEEEcCEEEEccCC--CCCCCCCCCcCC-C-CEEecCCHHHHHHHHHHh
Confidence            4678888889988875     445666677778999999999999  777777665322 1 112211111211     1


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc---eE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS---VV  177 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~---v~  177 (227)
                      ..+++++|||+|.+|+|+|..|.+.+.+||++++.+..+...++             .  ++..+..+.++..++   +.
T Consensus       142 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~  221 (396)
T PRK09754        142 QPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELT  221 (396)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEE
Confidence            24789999999999999999999999999999986543322122             1  334456777776432   56


Q ss_pred             EcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          178 FQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       178 ~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      +.+|+++++|.||+|+| ..||+  .++...+++.+
T Consensus       222 l~~g~~i~aD~Vv~a~G-~~pn~--~l~~~~gl~~~  254 (396)
T PRK09754        222 LQSGETLQADVVIYGIG-ISAND--QLAREANLDTA  254 (396)
T ss_pred             ECCCCEEECCEEEECCC-CChhh--HHHHhcCCCcC
Confidence            78899999999999999 99999  88887777654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.76  E-value=1.3e-18  Score=159.20  Aligned_cols=136  Identities=16%  Similarity=0.086  Sum_probs=93.5

Q ss_pred             CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810           70 EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++..+.||+||||||+  .|.+|++++.+..  .++...+.... +..+++++|||+|++|+|+|..+.++|.+||++++
T Consensus       269 ~g~~i~ad~lIIATGS--~P~~P~~~~~~~~--~V~ts~d~~~l-~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~  343 (659)
T PTZ00153        269 SGKEFKVKNIIIATGS--TPNIPDNIEVDQK--SVFTSDTAVKL-EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEY  343 (659)
T ss_pred             CCEEEECCEEEEcCCC--CCCCCCCCCCCCC--cEEehHHhhhh-hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4568999999999999  8888876664331  12322222222 22478999999999999999999999999999998


Q ss_pred             cCccccc-----------cC--CCceEE--cCCccEEeCCc----eEE--cC-------C--------CEEeccEEEEcc
Q psy810          150 ISVAFKH-----------QI--GDSVVQ--KPDIKRLLQDS----VVF--QD-------D--------TSHPFDSIIYCT  193 (227)
Q Consensus       150 ~~~~~~~-----------~~--~~~i~~--~~~i~~~~~~~----v~~--~~-------g--------~~i~~D~vi~at  193 (227)
                      .+..+..           .+  ..+|.+  +..+.++.++.    +.+  .+       +        .++++|.||+|+
T Consensus       344 ~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAt  423 (659)
T PTZ00153        344 SPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVAT  423 (659)
T ss_pred             cCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEE
Confidence            6543321           01  123433  45577775431    332  21       1        268999999999


Q ss_pred             cccccccccccc--CCcccccc
Q psy810          194 GAYKYSYKLTFL--ATFSISMA  213 (227)
Q Consensus       194 G~~~~~~~~~~l--~~~gl~~~  213 (227)
                      | .+||+  .+|  +..+++++
T Consensus       424 G-r~Pnt--~~L~l~~~gi~~~  442 (659)
T PTZ00153        424 G-RKPNT--NNLGLDKLKIQMK  442 (659)
T ss_pred             C-cccCC--ccCCchhcCCccc
Confidence            9 99999  875  56677665

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.76  E-value=2.2e-18  Score=153.10  Aligned_cols=142  Identities=11%  Similarity=0.067  Sum_probs=95.2

Q ss_pred             EEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810           64 LHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        64 ~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~  142 (227)
                      +.+.. ++..+.||+||||||+  .  .|++||.....+. .++....... ...+++++|||+|.+|+|+|..|.+.+.
T Consensus       120 ~~v~v-~~~~~~~d~lIiATGs--~--~p~ipg~~~~~~~~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~  193 (460)
T PRK06292        120 NTVEV-NGERIEAKNIVIATGS--R--VPPIPGVWLILGDRLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGV  193 (460)
T ss_pred             CEEEE-CcEEEEeCEEEEeCCC--C--CCCCCCCcccCCCcEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            33444 4567999999999999  4  5566665322222 2222222212 2357899999999999999999999999


Q ss_pred             eEEEEeecCccccc-----------cCCCceEE--cCCccEEeCC---ceEE--cCC--CEEeccEEEEccccccccccc
Q psy810          143 NVFLSHHISVAFKH-----------QIGDSVVQ--KPDIKRLLQD---SVVF--QDD--TSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       143 ~Vtli~~~~~~~~~-----------~~~~~i~~--~~~i~~~~~~---~v~~--~~g--~~i~~D~vi~atG~~~~~~~~  202 (227)
                      +|+++++.+..+..           .+..+|.+  +..+.++..+   .+++  .++  .++++|.||+|+| .+||+  
T Consensus       194 ~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G-~~p~~--  270 (460)
T PRK06292        194 KVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATG-RRPNT--  270 (460)
T ss_pred             cEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccC-CccCC--
Confidence            99999986533221           11112443  4567777532   3443  344  4689999999999 99999  


Q ss_pred             cc--cCCccccccc
Q psy810          203 TF--LATFSISMAM  214 (227)
Q Consensus       203 ~~--l~~~gl~~~~  214 (227)
                      ++  ++..+++++.
T Consensus       271 ~~l~l~~~g~~~~~  284 (460)
T PRK06292        271 DGLGLENTGIELDE  284 (460)
T ss_pred             CCCCcHhhCCEecC
Confidence            74  5677887764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.76  E-value=5.5e-18  Score=150.59  Aligned_cols=142  Identities=13%  Similarity=0.164  Sum_probs=96.9

Q ss_pred             CcEEEec-CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceee-ecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFAN-EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQM-HSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~-~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~-~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ....+.. +++..+.||+||||||+  .|..|  ||.+. .+..+ ++.+..... ..+++++|||+|++|+|+|..|.+
T Consensus       120 ~~~~v~~~~~~~~~~~d~lViAtGs--~p~~~--pg~~~-~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~  193 (462)
T PRK06416        120 NTVRVMTEDGEQTYTAKNIILATGS--RPREL--PGIEI-DGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYAS  193 (462)
T ss_pred             CEEEEecCCCcEEEEeCEEEEeCCC--CCCCC--CCCCC-CCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHH
Confidence            3455543 23368999999999999  77654  45432 22223 222222222 246899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC--c--eEEcCC---CEEeccEEEEcccccc
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD--S--VVFQDD---TSHPFDSIIYCTGAYK  197 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~--~--v~~~~g---~~i~~D~vi~atG~~~  197 (227)
                      .+.+||++++.+..+.. ++             .  ++..+..+.++..+  +  +.+.+|   +++++|.||+|+| .+
T Consensus       194 ~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G-~~  271 (462)
T PRK06416        194 LGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVG-RR  271 (462)
T ss_pred             cCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeC-Cc
Confidence            99999999986543321 11             1  33445567777643  3  444555   5689999999999 99


Q ss_pred             cccccccc--CCcccccc
Q psy810          198 YSYKLTFL--ATFSISMA  213 (227)
Q Consensus       198 ~~~~~~~l--~~~gl~~~  213 (227)
                      |++  .++  +..+++++
T Consensus       272 p~~--~~l~l~~~gl~~~  287 (462)
T PRK06416        272 PNT--ENLGLEELGVKTD  287 (462)
T ss_pred             cCC--CCCCchhcCCeec
Confidence            999  875  57777765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.76  E-value=3.5e-18  Score=151.75  Aligned_cols=145  Identities=12%  Similarity=0.120  Sum_probs=98.5

Q ss_pred             CcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           62 KCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        62 ~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      ....+..+++ ..+.||+||||||+  .|..|++++.+..  ..++......... .+++++|||+|++|+|+|..+.+.
T Consensus       118 ~~v~v~~~~~~~~~~~d~lviATGs--~p~~~p~~~~~~~--~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~  192 (458)
T PRK06912        118 HRVRVEYGDKEEVVDAEQFIIAAGS--EPTELPFAPFDGK--WIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRL  192 (458)
T ss_pred             CEEEEeeCCCcEEEECCEEEEeCCC--CCCCCCCCCCCCC--eEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHc
Confidence            4445554443 57999999999999  7777777765321  1233322222222 368999999999999999999999


Q ss_pred             cCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCCc--eEEc-CCC--EEeccEEEEcccccccccc
Q psy810          141 AKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQDS--VVFQ-DDT--SHPFDSIIYCTGAYKYSYK  201 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~~--v~~~-~g~--~i~~D~vi~atG~~~~~~~  201 (227)
                      +.+||++++.+..+...           + ..  ++..+..+.+++.+.  +.+. +|+  ++++|.||+|+| .+||+ 
T Consensus       193 g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G-~~p~~-  270 (458)
T PRK06912        193 GTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVG-RKPRV-  270 (458)
T ss_pred             CCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecC-CccCC-
Confidence            99999999865433211           1 01  334455677776432  4443 443  589999999999 99999 


Q ss_pred             ccc--cCCccccccc
Q psy810          202 LTF--LATFSISMAM  214 (227)
Q Consensus       202 ~~~--l~~~gl~~~~  214 (227)
                       .+  ++..|++++.
T Consensus       271 -~~l~l~~~gv~~~~  284 (458)
T PRK06912        271 -QQLNLEKAGVQFSN  284 (458)
T ss_pred             -CCCCchhcCceecC
Confidence             75  4566777654

>KOG0405|consensus

Probab=99.76  E-value=3.4e-18  Score=141.59  Aligned_cols=204  Identities=14%  Similarity=0.163  Sum_probs=134.1

Q ss_pred             CCCCchhhhhhhcCCCCCCchhhhhhcCCcc--eEeee------------ccc---ceeEEeCceEEEEEEeeCCC--Cc
Q psy810            3 LTPSCLPSVLTTYNSEALQPIRKLRESQPTN--FISIA------------FIP---CIEIKFGSSWAEIEKFSVPT--KC   63 (227)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~------------~~~---~~~i~~~~~V~~i~~~~~~~--~~   63 (227)
                      ||.||+|.|+.-|++...+.+.+-.......  ..+++            .|.   ..+..-++.|.-|+.+..-.  ..
T Consensus        60 Vn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~  139 (478)
T KOG0405|consen   60 VNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE  139 (478)
T ss_pred             EeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCc
Confidence            6899999999999988666554433221110  00000            000   01112234455454322111  22


Q ss_pred             EEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           64 LHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        64 ~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      -+|...++  ..+.+++++||||.  +|.+|.+||.+.    .+.+..+.+.++ .+++++|||+|++|+|+|..++.+|
T Consensus       140 v~V~~~d~~~~~Ytak~iLIAtGg--~p~~PnIpG~E~----gidSDgff~Lee-~Pkr~vvvGaGYIavE~Agi~~gLg  212 (478)
T KOG0405|consen  140 VEVEVNDGTKIVYTAKHILIATGG--RPIIPNIPGAEL----GIDSDGFFDLEE-QPKRVVVVGAGYIAVEFAGIFAGLG  212 (478)
T ss_pred             eEEEecCCeeEEEecceEEEEeCC--ccCCCCCCchhh----ccccccccchhh-cCceEEEEccceEEEEhhhHHhhcC
Confidence            34444444  35899999999999  999999999754    355555556655 4789999999999999999999999


Q ss_pred             CeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--Cc---eEEcCCCEEeccEEEEcccccccccc
Q psy810          142 KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--DS---VVFQDDTSHPFDSIIYCTGAYKYSYK  201 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~~---v~~~~g~~i~~D~vi~atG~~~~~~~  201 (227)
                      .++.|+-|.+..++. +++               +++..+.+.++..  ++   +..+.|....+|.++||+| ..||++
T Consensus       213 sethlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiG-R~Pntk  290 (478)
T KOG0405|consen  213 SETHLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIG-RKPNTK  290 (478)
T ss_pred             CeeEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEec-CCCCcc
Confidence            999999996543332 321               3344555665543  22   5556665567999999999 999994


Q ss_pred             ccccCCcccccccC
Q psy810          202 LTFLATFSISMAMS  215 (227)
Q Consensus       202 ~~~l~~~gl~~~~~  215 (227)
                      .--|+..|++++.+
T Consensus       291 ~L~le~vGVk~~~~  304 (478)
T KOG0405|consen  291 GLNLENVGVKTDKN  304 (478)
T ss_pred             cccchhcceeeCCC
Confidence            44567888998876

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.75  E-value=1.5e-17  Score=147.69  Aligned_cols=145  Identities=10%  Similarity=0.070  Sum_probs=100.3

Q ss_pred             CcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCC-CCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYE-GADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+...++ ..+.||+||+|||+  .|+.|++| +.+.  ...++..+.... ...+++++|||+|.+|+|+|..|.+
T Consensus       117 ~~~~v~~~~g~~~~~~d~lVlAtG~--~p~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~  191 (461)
T TIGR01350       117 GTVLVTGENGEETLTAKNIIIATGS--RPRSLPGPFDFDG--EVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFAS  191 (461)
T ss_pred             CEEEEecCCCcEEEEeCEEEEcCCC--CCCCCCCCCCCCC--ceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHH
Confidence            4455655443 57999999999999  88888776 3221  112222222221 2246899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cce--EEcCC--CEEeccEEEEccccccc
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DSV--VFQDD--TSHPFDSIIYCTGAYKY  198 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~v--~~~~g--~~i~~D~vi~atG~~~~  198 (227)
                      .+.+||++.+.+..+.. +.             .  ++.....+.+++.  +++  .+.+|  .++++|.+|+|+| +.|
T Consensus       192 ~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G-~~p  269 (461)
T TIGR01350       192 LGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVG-RKP  269 (461)
T ss_pred             cCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecC-Ccc
Confidence            99999999986543221 11             1  3444566777753  333  34466  4789999999999 999


Q ss_pred             ccccc--ccCCcccccccC
Q psy810          199 SYKLT--FLATFSISMAMS  215 (227)
Q Consensus       199 ~~~~~--~l~~~gl~~~~~  215 (227)
                      ++  .  +++..+++++..
T Consensus       270 ~~--~~l~~~~~gl~~~~~  286 (461)
T TIGR01350       270 NT--EGLGLENLGVELDER  286 (461)
T ss_pred             cC--CCCCcHhhCceECCC
Confidence            99  7  678888887753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.75  E-value=1.1e-17  Score=148.75  Aligned_cols=143  Identities=10%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             cEEEecCC--eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           63 CLHFANEE--ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        63 ~~~v~~~~--~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      ...+...+  ...+.||+||||||+  .|..|  ||.+. ....+.+.+.... ...+++++|||+|++|+|+|..|+++
T Consensus       121 ~v~v~~~~g~~~~~~~d~lViATGs--~p~~~--pg~~~-~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~  194 (466)
T PRK07818        121 TLEVDLNDGGTETVTFDNAIIATGS--STRLL--PGTSL-SENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNY  194 (466)
T ss_pred             EEEEEecCCCeeEEEcCEEEEeCCC--CCCCC--CCCCC-CCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHc
Confidence            34454433  357999999999999  77654  55432 1223333322112 22468999999999999999999999


Q ss_pred             cCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCCc----eEEc--CCC--EEeccEEEEccccccc
Q psy810          141 AKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQDS----VVFQ--DDT--SHPFDSIIYCTGAYKY  198 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~~----v~~~--~g~--~i~~D~vi~atG~~~~  198 (227)
                      +.+|+++++.+..+...           + ..  ++..+..+.++.+++    +.+.  +|+  ++++|.||+|+| ++|
T Consensus       195 G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G-~~p  273 (466)
T PRK07818        195 GVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIG-FAP  273 (466)
T ss_pred             CCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcC-ccc
Confidence            99999999855433211           0 11  344456777776432    3443  664  689999999999 999


Q ss_pred             cccccc--cCCccccccc
Q psy810          199 SYKLTF--LATFSISMAM  214 (227)
Q Consensus       199 ~~~~~~--l~~~gl~~~~  214 (227)
                      |+  .+  |+..|++++.
T Consensus       274 n~--~~l~l~~~g~~~~~  289 (466)
T PRK07818        274 RV--EGYGLEKTGVALTD  289 (466)
T ss_pred             CC--CCCCchhcCcEECC
Confidence            99  75  5788888764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.74  E-value=1.5e-17  Score=147.95  Aligned_cols=143  Identities=10%  Similarity=0.080  Sum_probs=95.0

Q ss_pred             cEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           63 CLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        63 ~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      .+.+.+.++  ..+.||+||||||+  +|.  ++||.+......++........ ..+++++|||+|++|+|+|..+.+.
T Consensus       122 ~v~v~~~~g~~~~~~~d~lVIATGs--~p~--~ipg~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~  196 (466)
T PRK06115        122 KVVVKAEDGSETQLEAKDIVIATGS--EPT--PLPGVTIDNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRL  196 (466)
T ss_pred             EEEEEcCCCceEEEEeCEEEEeCCC--CCC--CCCCCCCCCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHc
Confidence            345554444  47999999999999  664  4566532111123322222222 2479999999999999999999999


Q ss_pred             cCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cce--EEc---CC--CEEeccEEEEccccc
Q psy810          141 AKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DSV--VFQ---DD--TSHPFDSIIYCTGAY  196 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~v--~~~---~g--~~i~~D~vi~atG~~  196 (227)
                      |.+||++++.+..+.. ++             .  ++..+..+.++.+  +++  .+.   +|  ..+++|.||+|+| +
T Consensus       197 G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G-~  274 (466)
T PRK06115        197 GAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIG-R  274 (466)
T ss_pred             CCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccC-C
Confidence            9999999985543322 21             1  3344556777764  233  332   23  4689999999999 9


Q ss_pred             cccccccc--cCCccccccc
Q psy810          197 KYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       197 ~~~~~~~~--l~~~gl~~~~  214 (227)
                      +||+  .+  ++..+++++.
T Consensus       275 ~pn~--~~l~~~~~g~~~~~  292 (466)
T PRK06115        275 RPYT--QGLGLETVGLETDK  292 (466)
T ss_pred             cccc--ccCCcccccceeCC
Confidence            9999  75  4566666653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.74  E-value=8.5e-18  Score=148.25  Aligned_cols=134  Identities=25%  Similarity=0.401  Sum_probs=110.4

Q ss_pred             CCCCCchhhhhhcCCcceEeeecccceeEEeCceEEEEEEeeCCCCcEEEecCCeeE--EEcCEEEEccCCCCCCCCCCC
Q psy810           17 SEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITL--HYNLLQSLPSSHNSVPNIPSY   94 (227)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~--~~~~~vilAtG~~~~p~~p~~   94 (227)
                      .+.+++...++......+..|+.+.  .+.+++.|..++ ++.+...|+|+++++..  +.+|+||+|||.++.|++|++
T Consensus        75 ~~~~~~~~~~~~y~~~~~~~y~~~~--~i~~~~~v~~~~-~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~  151 (443)
T COG2072          75 DEAFAPFAEIKDYIKDYLEKYGLRF--QIRFNTRVEVAD-WDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF  151 (443)
T ss_pred             cccCCCcccHHHHHHHHHHHcCcee--EEEcccceEEEE-ecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC
Confidence            4556655556665555555655544  555666666644 55566799999887755  559999999999999999999


Q ss_pred             CCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810           95 EGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus        95 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +|.+.|.+..+|+.+|.+..+++||+|+|||+|+||+++|..|.+.+++|||+.|++..
T Consensus       152 ~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         152 AGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             CCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            99999999999999999999999999999999999999999999999999999997643

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.74  E-value=1.1e-17  Score=143.98  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=118.1

Q ss_pred             ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC-----------CCCCCCCC
Q psy810           49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD-----------YRVPDPFR  117 (227)
Q Consensus        49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~-----------~~~~~~~~  117 (227)
                      .+|.+|+.     +..+|.+.++..+.||++|+|+|+  .++.+.+||+.++....-...+           +.......
T Consensus        78 ~~V~~ID~-----~~k~V~~~~~~~i~YD~LVvalGs--~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~  150 (405)
T COG1252          78 GEVTDIDR-----DAKKVTLADLGEISYDYLVVALGS--ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEE  150 (405)
T ss_pred             EEEEEEcc-----cCCEEEeCCCccccccEEEEecCC--cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            67788776     667888888778999999999999  8899999997654211000000           01111111


Q ss_pred             ----CCeEEEEccCccHHHHHHHHHhccC-------------eEEEEeecCccccccCCC---------------ceEEc
Q psy810          118 ----DQNVLLVGFGPSGVDIAMDIEKVAK-------------NVFLSHHISVAFKHQIGD---------------SVVQK  165 (227)
Q Consensus       118 ----~~~v~VvGgG~~g~e~a~~l~~~~~-------------~Vtli~~~~~~~~~~~~~---------------~i~~~  165 (227)
                          -.+++|+|||++|+|+|.+|..+..             +|+|+++.+..+ ..++.               ++..+
T Consensus       151 ~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-p~~~~~l~~~a~~~L~~~GV~v~l~  229 (405)
T COG1252         151 DDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-PMFPPKLSKYAERALEKLGVEVLLG  229 (405)
T ss_pred             cccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-cCCCHHHHHHHHHHHHHCCCEEEcC
Confidence                1379999999999999999987632             899999955433 33432               55667


Q ss_pred             CCccEEeCCceEEcCCCE-EeccEEEEccccccccccccccCC-cccccccCCCCCCCCCCC
Q psy810          166 PDIKRLLQDSVVFQDDTS-HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAMSTPDGPNPTSR  225 (227)
Q Consensus       166 ~~i~~~~~~~v~~~~g~~-i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~  225 (227)
                      +.|+++++++|++++|.. |++|.+|||+| .+++   +++.+ .+++.++.   |.+.+.+
T Consensus       230 ~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaG-v~a~---~~~~~l~~~e~dr~---Grl~V~~  284 (405)
T COG1252         230 TPVTEVTPDGVTLKDGEEEIPADTVVWAAG-VRAS---PLLKDLSGLETDRR---GRLVVNP  284 (405)
T ss_pred             CceEEECCCcEEEccCCeeEecCEEEEcCC-CcCC---hhhhhcChhhhccC---CCEEeCC
Confidence            889999999999999995 99999999999 9998   68888 47776753   4444443

>KOG0404|consensus

Probab=99.74  E-value=3.7e-18  Score=133.71  Aligned_cols=156  Identities=16%  Similarity=0.264  Sum_probs=116.5

Q ss_pred             ceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCC-C-cccceeeecCCCCCCCC--CCCCeEEEE
Q psy810           49 SSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGA-D-LFRGLQMHSHDYRVPDP--FRDQNVLLV  124 (227)
Q Consensus        49 ~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~-~-~~~~~~~~~~~~~~~~~--~~~~~v~Vv  124 (227)
                      ..|.+++.   ....|.+.++.+ ...+|.||+|||+  ..++..+||. + .||++.+..|..||...  +++|..+||
T Consensus        90 EtVskv~~---sskpF~l~td~~-~v~~~avI~atGA--sAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVI  163 (322)
T KOG0404|consen   90 ETVSKVDL---SSKPFKLWTDAR-PVTADAVILATGA--SAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVI  163 (322)
T ss_pred             eehhhccc---cCCCeEEEecCC-ceeeeeEEEeccc--ceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEE
Confidence            34444443   337799998775 7999999999999  5566677765 3 48999999999999876  899999999


Q ss_pred             ccCccHHHHHHHHHhccCeEEEEeecCccccc--cCCCceEEcCCccEE--------eCC-----ceEE-----cCCCEE
Q psy810          125 GFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH--QIGDSVVQKPDIKRL--------LQD-----SVVF-----QDDTSH  184 (227)
Q Consensus       125 GgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~--~~~~~i~~~~~i~~~--------~~~-----~v~~-----~~g~~i  184 (227)
                      |||.+++|-|.+|...+++|++++|++ .|+.  .|..+...+++|.-+        .++     ++.+     .+-+.+
T Consensus       164 GGGDsA~EEA~fLtkyaskVyii~Rrd-~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl  242 (322)
T KOG0404|consen  164 GGGDSAMEEALFLTKYASKVYIIHRRD-HFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDL  242 (322)
T ss_pred             cCcHHHHHHHHHHHhhccEEEEEEEhh-hhhHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCccccc
Confidence            999999999999999999999999954 4432  122222222222221        122     2332     233468


Q ss_pred             eccEEEEccccccccccccccCCcccccccC
Q psy810          185 PFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       185 ~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                      +++-+++++| ..|++  .||+. .++++.+
T Consensus       243 ~v~GlFf~IG-H~Pat--~~l~g-qve~d~~  269 (322)
T KOG0404|consen  243 PVSGLFFAIG-HSPAT--KFLKG-QVELDED  269 (322)
T ss_pred             ccceeEEEec-CCchh--hHhcC-ceeeccC
Confidence            9999999999 99999  99997 7888875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.74  E-value=9.5e-18  Score=148.31  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=115.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec-CCeeEEE--cCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC---
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEITLHY--NLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD---  114 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~~~~~--~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~---  114 (227)
                      .+++++++++|.+|+..+   ....+.. .++..+.  ||+||+|||+  +|..|++||.+.-  ..++...+.+..   
T Consensus        69 ~gv~~~~~~~V~~id~~~---~~v~~~~~~~~~~~~~~yd~lviAtG~--~~~~~~i~g~~~~--~v~~~~~~~~~~~l~  141 (444)
T PRK09564         69 SGIDVKTEHEVVKVDAKN---KTITVKNLKTGSIFNDTYDKLMIATGA--RPIIPPIKNINLE--NVYTLKSMEDGLALK  141 (444)
T ss_pred             CCCeEEecCEEEEEECCC---CEEEEEECCCCCEEEecCCEEEECCCC--CCCCCCCCCcCCC--CEEEECCHHHHHHHH
Confidence            356788889999987522   3444433 2244555  9999999999  8899999987531  123332222211   


Q ss_pred             ----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc
Q psy810          115 ----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS  175 (227)
Q Consensus       115 ----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~  175 (227)
                          ...+++|+|+|+|++|+|+|..+.+.+.+|+++.+.+..+...++             .  ++.....+.++.+++
T Consensus       142 ~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~  221 (444)
T PRK09564        142 ELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED  221 (444)
T ss_pred             HHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCC
Confidence                234789999999999999999999999999999885543322121             1  334456677776443


Q ss_pred             ---eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 ---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 ---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                         ....++.++++|.+|+|+| +.|++  +++++.|++++.
T Consensus       222 ~~~~v~~~~~~i~~d~vi~a~G-~~p~~--~~l~~~gl~~~~  260 (444)
T PRK09564        222 KVEGVVTDKGEYEADVVIVATG-VKPNT--EFLEDTGLKTLK  260 (444)
T ss_pred             cEEEEEeCCCEEEcCEEEECcC-CCcCH--HHHHhcCccccC
Confidence               2234566899999999999 99999  999999988764

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.74  E-value=8.1e-18  Score=148.03  Aligned_cols=155  Identities=15%  Similarity=0.162  Sum_probs=110.0

Q ss_pred             eCceEEEEEEeeCCCCcEEEec--------CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC------
Q psy810           47 FGSSWAEIEKFSVPTKCLHFAN--------EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV------  112 (227)
Q Consensus        47 ~~~~V~~i~~~~~~~~~~~v~~--------~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~------  112 (227)
                      ...+|.+|+..+   ....+..        +++..+.||+||||||+  .|..|++||.++.   .+..+.+.+      
T Consensus        80 i~~~V~~Id~~~---~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs--~~~~~~ipG~~e~---~~~~~~~~~a~~~~~  151 (424)
T PTZ00318         80 LRAVVYDVDFEE---KRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA--RPNTFNIPGVEER---AFFLKEVNHARGIRK  151 (424)
T ss_pred             EEEEEEEEEcCC---CEEEEecccccccccCCceEecCCEEEECCCc--ccCCCCCCCHHHc---CCCCCCHHHHHHHHH
Confidence            346788877522   3343311        45668999999999999  8888899997542   111111111      


Q ss_pred             ---------------C-CCCCCCeEEEEccCccHHHHHHHHHhc--------------cCeEEEEeecCccccccCC---
Q psy810          113 ---------------P-DPFRDQNVLLVGFGPSGVDIAMDIEKV--------------AKNVFLSHHISVAFKHQIG---  159 (227)
Q Consensus       113 ---------------~-~~~~~~~v~VvGgG~~g~e~a~~l~~~--------------~~~Vtli~~~~~~~~~~~~---  159 (227)
                                     . ...+.++++|||||.+|+|+|..|...              +.+|||+++.+..+. .++   
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~  230 (424)
T PTZ00318        152 RIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQAL  230 (424)
T ss_pred             HHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHH
Confidence                           0 011235899999999999999999863              578999998654432 222   


Q ss_pred             ----------C--ceEEcCCccEEeCCceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          160 ----------D--SVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       160 ----------~--~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                                .  ++..+..|.++.++.+++++|+++++|.+|+|+| .+|+   ++++.++++++.
T Consensus       231 ~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G-~~~~---~~~~~~~l~~~~  293 (424)
T PTZ00318        231 RKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTG-VGPG---PLTKQLKVDKTS  293 (424)
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccC-CCCc---chhhhcCCcccC
Confidence                      1  3444667889988889999999999999999999 9997   588888887764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.73  E-value=2.4e-17  Score=146.95  Aligned_cols=145  Identities=10%  Similarity=0.079  Sum_probs=95.8

Q ss_pred             CcEEEec--CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFAN--EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~--~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      +.|++..  +++..++||+||||||+  .|..|+..+.   .+..++.+.........+++|+|||+|++|+|+|..+.+
T Consensus       130 ~~~~v~v~~~~~~~~~~d~lViATGs--~p~~~p~~~~---~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~  204 (475)
T PRK06327        130 AGYEIKVTGEDETVITAKHVIIATGS--EPRHLPGVPF---DNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRR  204 (475)
T ss_pred             CCCEEEEecCCCeEEEeCEEEEeCCC--CCCCCCCCCC---CCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHH
Confidence            3566654  33458999999999999  6654432221   222233222111222347899999999999999999999


Q ss_pred             ccCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEeCC--c--eEEcC--C--CEEeccEEEEcccccc
Q psy810          140 VAKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLLQD--S--VVFQD--D--TSHPFDSIIYCTGAYK  197 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~~~--~--v~~~~--g--~~i~~D~vi~atG~~~  197 (227)
                      ++.+||++++.+..+...           + ..  ++..+..|.++..+  +  +.+.+  |  ..+++|.||+|+| ++
T Consensus       205 ~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G-~~  283 (475)
T PRK06327        205 LGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIG-RV  283 (475)
T ss_pred             cCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccC-Cc
Confidence            999999999855332210           1 11  33345567777643  2  44444  3  4689999999999 99


Q ss_pred             ccccccc--cCCccccccc
Q psy810          198 YSYKLTF--LATFSISMAM  214 (227)
Q Consensus       198 ~~~~~~~--l~~~gl~~~~  214 (227)
                      |++  .+  ++..+++++.
T Consensus       284 p~~--~~l~~~~~g~~~~~  300 (475)
T PRK06327        284 PNT--DGLGLEAVGLKLDE  300 (475)
T ss_pred             cCC--CCCCcHhhCceeCC
Confidence            999  84  4567777764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.73  E-value=6.6e-17  Score=144.10  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=90.3

Q ss_pred             cEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           63 CLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        63 ~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      .+.+.+.++  ..+.||+||||||+  .|..|+  +... .+. .++..+...... .+++++|||+|++|+|+|..|++
T Consensus       128 ~~~v~~~~g~~~~~~~d~lViATGs--~p~~~p--~~~~-~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~  201 (472)
T PRK05976        128 TVSVETETGENEMIIPENLLIATGS--RPVELP--GLPF-DGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLAD  201 (472)
T ss_pred             EEEEEeCCCceEEEEcCEEEEeCCC--CCCCCC--CCCC-CCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHH
Confidence            567766554  67999999999999  776443  2211 111 233222222222 36899999999999999999999


Q ss_pred             ccCeEEEEeecCcccccc-----------C-CC--ceEEcCCccEEe---CCce---EEcCCC--EEeccEEEEcccccc
Q psy810          140 VAKNVFLSHHISVAFKHQ-----------I-GD--SVVQKPDIKRLL---QDSV---VFQDDT--SHPFDSIIYCTGAYK  197 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~-----------~-~~--~i~~~~~i~~~~---~~~v---~~~~g~--~i~~D~vi~atG~~~  197 (227)
                      .+.+|||+++.+..+...           + ..  ++..++.+.++.   .+++   .+.+|.  ++++|.+|+|+| .+
T Consensus       202 ~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G-~~  280 (472)
T PRK05976        202 FGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG-RR  280 (472)
T ss_pred             cCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC-Cc
Confidence            999999999855332210           1 11  334455677775   3443   234664  589999999999 99


Q ss_pred             cccccccc
Q psy810          198 YSYKLTFL  205 (227)
Q Consensus       198 ~~~~~~~l  205 (227)
                      |++  .+|
T Consensus       281 p~~--~~l  286 (472)
T PRK05976        281 PNT--EGI  286 (472)
T ss_pred             cCC--CCC
Confidence            999  764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.72  E-value=4.1e-17  Score=129.30  Aligned_cols=107  Identities=29%  Similarity=0.403  Sum_probs=80.9

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      +.+++++++++|.++++.+   +.|.+++.++..+.+|+||+|||..+.|+.|++|| ..+. ..+|+..+.+..++.++
T Consensus        94 ~~~l~i~~~~~V~~v~~~~---~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k  168 (203)
T PF13738_consen   94 RFGLEIRFNTRVESVRRDG---DGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGK  168 (203)
T ss_dssp             HTTGGEETS--EEEEEEET---TTEEEEETTS-EEEEEEEEE---SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTS
T ss_pred             hcCcccccCCEEEEEEEec---cEEEEEEEecceeeeeeEEEeeeccCCCCcccccc-cccc-ceEehhhcCChhhcCCC
Confidence            3455799999999999764   56999999888899999999999988999999999 1122 67899889888889999


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.||+|+|..|.+.+++|+|++|++
T Consensus       169 ~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  169 RVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             EEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             cEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            99999999999999999999999999999964

...

>KOG1335|consensus

Probab=99.71  E-value=8.9e-17  Score=134.70  Aligned_cols=213  Identities=11%  Similarity=0.120  Sum_probs=126.1

Q ss_pred             CCCCchhhhhhhcCCCCCCchhh-hhhcCCcce--Eeee--------------cccceeEEe-CceEEEEEEeeCCCCc-
Q psy810            3 LTPSCLPSVLTTYNSEALQPIRK-LRESQPTNF--ISIA--------------FIPCIEIKF-GSSWAEIEKFSVPTKC-   63 (227)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~~-l~~~~~~~~--~~~~--------------~~~~~~i~~-~~~V~~i~~~~~~~~~-   63 (227)
                      ||.||||||.+++++-.|+...- ..+.--.+.  .+++              +..++.-.| ..+|+-+..+..-.+. 
T Consensus        79 LnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~  158 (506)
T KOG1335|consen   79 LNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN  158 (506)
T ss_pred             eeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc
Confidence            79999999999999988865543 111100000  0100              000111111 1334433332221122 


Q ss_pred             -EEEecC--CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           64 -LHFANE--EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        64 -~~v~~~--~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                       -.+...  ....+.++++|+|||+    ..+++||+.--+.+++.+.--.+... .+++++|+|+|.+|+|++.-+.++
T Consensus       159 ~V~v~k~dg~~~ii~aKnIiiATGS----eV~~~PGI~IDekkIVSStgALsL~~-vPk~~~viG~G~IGLE~gsV~~rL  233 (506)
T KOG1335|consen  159 KVSVKKIDGEDQIIKAKNIIIATGS----EVTPFPGITIDEKKIVSSTGALSLKE-VPKKLTVIGAGYIGLEMGSVWSRL  233 (506)
T ss_pred             eEEEeccCCCceEEeeeeEEEEeCC----ccCCCCCeEecCceEEecCCccchhh-CcceEEEEcCceeeeehhhHHHhc
Confidence             223222  2368999999999999    45577887432334444432333333 579999999999999999999999


Q ss_pred             cCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCCc-----eEEc---CC--CEEeccEEEEcccc
Q psy810          141 AKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQDS-----VVFQ---DD--TSHPFDSIIYCTGA  195 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~~-----v~~~---~g--~~i~~D~vi~atG~  195 (227)
                      |++||+++.-+. +-..++.               ++.+.+.+...+.++     +.+.   +|  .+++||.+++|+| 
T Consensus       234 GseVT~VEf~~~-i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG-  311 (506)
T KOG1335|consen  234 GSEVTVVEFLDQ-IGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIG-  311 (506)
T ss_pred             CCeEEEEEehhh-hccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEcc-
Confidence            999999987433 2222221               445566666665432     3332   23  3489999999999 


Q ss_pred             ccccccccccCCcccccccCCCCCCCCCCC
Q psy810          196 YKYSYKLTFLATFSISMAMSTPDGPNPTSR  225 (227)
Q Consensus       196 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~  225 (227)
                      .+|=++.--|++.|+++|.   .+-+++..
T Consensus       312 RrP~t~GLgle~iGi~~D~---r~rv~v~~  338 (506)
T KOG1335|consen  312 RRPFTEGLGLEKIGIELDK---RGRVIVNT  338 (506)
T ss_pred             CcccccCCChhhccccccc---ccceeccc
Confidence            7776633345677777754   35555444

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.5e-16  Score=130.63  Aligned_cols=167  Identities=13%  Similarity=0.139  Sum_probs=129.4

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      .+++.--.+..++++.....+..++.+.+|-.++++.+|+|||+.+  +-..+||.++|..+.+.||..|+..-+.||+|
T Consensus       280 ~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW--Rn~nvPGE~e~rnKGVayCPHCDGPLF~gK~V  357 (520)
T COG3634         280 DVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW--RNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRV  357 (520)
T ss_pred             CchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch--hcCCCCchHHHhhCCeeeCCCCCCcccCCceE
Confidence            4456666777888876666678899999999999999999999954  44589999999999999999999999999999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCccccc------cC--CCceEEcC--CccEEeCC-----ceEEc---CCC-
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH------QI--GDSVVQKP--DIKRLLQD-----SVVFQ---DDT-  182 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~--~~~i~~~~--~i~~~~~~-----~v~~~---~g~-  182 (227)
                      +|||||+||+|.|..|+....+||+++-. +.+..      .+  -.++.+..  .-+++.++     ++...   +|. 
T Consensus       358 AVIGGGNSGvEAAIDLAGiv~hVtllEF~-~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~  436 (520)
T COG3634         358 AVIGGGNSGVEAAIDLAGIVEHVTLLEFA-PELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE  436 (520)
T ss_pred             EEECCCcchHHHHHhHHhhhheeeeeecc-hhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence            99999999999999999999999999873 33321      11  12444333  33455554     24443   343 


Q ss_pred             -EEeccEEEEccccccccccccccCCcccccccC
Q psy810          183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                       .+.-+-|++-+| ..||+  .||+.. +++++.
T Consensus       437 ~~l~LeGvFVqIG-L~PNT--~WLkg~-vel~~r  466 (520)
T COG3634         437 HHLELEGVFVQIG-LLPNT--EWLKGA-VELNRR  466 (520)
T ss_pred             eEEEeeeeEEEEe-cccCh--hHhhch-hhcCcC
Confidence             367788999999 99999  999987 777754

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.67  E-value=3.2e-16  Score=135.16  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccc--eeee-cCC----CCC-C
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRG--LQMH-SHD----YRV-P  113 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~--~~~~-~~~----~~~-~  113 (227)
                      ++++.. .+|.+|+.     +...|.+++++.+.||+||||||+  .|..|++||..+..-  ..+. ...    ... .
T Consensus        68 gv~~~~-~~v~~id~-----~~~~V~~~~g~~~~yD~LviAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  139 (364)
T TIGR03169        68 GARFVI-AEATGIDP-----DRRKVLLANRPPLSYDVLSLDVGS--TTPLSGVEGAADLAVPVKPIENFLARWEALLESA  139 (364)
T ss_pred             CCEEEE-EEEEEEec-----ccCEEEECCCCcccccEEEEccCC--CCCCCCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence            345544 57788765     345677778878999999999999  888899998533100  0000 000    000 0


Q ss_pred             -CCCCCCeEEEEccCccHHHHHHHHHhc----c--CeEEEEeecCccccccCC-------------Cce--EEcCCccEE
Q psy810          114 -DPFRDQNVLLVGFGPSGVDIAMDIEKV----A--KNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRL  171 (227)
Q Consensus       114 -~~~~~~~v~VvGgG~~g~e~a~~l~~~----~--~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~  171 (227)
                       ....+++++|+|+|.+|+|+|..|.+.    +  .+|+|+ +.+..+.. ++             .+|  ..+..+.++
T Consensus       140 ~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i  217 (364)
T TIGR03169       140 DAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRG  217 (364)
T ss_pred             hcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEE
Confidence             012357999999999999999999853    3  489999 43332221 21             133  345568888


Q ss_pred             eCCceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          172 LQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       172 ~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +++.+.+.+|.++++|.+|+|+| .+|+.   +|...+++++.
T Consensus       218 ~~~~v~~~~g~~i~~D~vi~a~G-~~p~~---~l~~~gl~~~~  256 (364)
T TIGR03169       218 PDGALILADGRTLPADAILWATG-ARAPP---WLAESGLPLDE  256 (364)
T ss_pred             cCCeEEeCCCCEEecCEEEEccC-CChhh---HHHHcCCCcCC
Confidence            77789999999999999999999 99984   66767777654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.67  E-value=1.2e-15  Score=138.51  Aligned_cols=160  Identities=13%  Similarity=0.156  Sum_probs=116.3

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEE
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVL  122 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~  122 (227)
                      +++ ++++|..++..+   +.+.+.+.++ .+.+++||+|||+  .|+.|++||.+.+.+..++++..++...+.+++|+
T Consensus        75 v~~-~~~~V~~i~~~~---~~~~V~~~~g-~~~a~~lVlATGa--~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~Vv  147 (555)
T TIGR03143        75 VKF-LQAEVLDVDFDG---DIKTIKTARG-DYKTLAVLIATGA--SPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVF  147 (555)
T ss_pred             CEE-eccEEEEEEecC---CEEEEEecCC-EEEEeEEEECCCC--ccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEE
Confidence            344 367777776422   4567777665 5899999999999  78899999976666667777767776667799999


Q ss_pred             EEccCccHHHHHHHHHhccCeEEEEeecCccccc-------cC-CCce--EEcCCccEEeCCc----eEE---cCCCEE-
Q psy810          123 LVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-------QI-GDSV--VQKPDIKRLLQDS----VVF---QDDTSH-  184 (227)
Q Consensus       123 VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-------~~-~~~i--~~~~~i~~~~~~~----v~~---~~g~~i-  184 (227)
                      |||||++|+|+|..|.+.+.+||+++|.+. +..       .+ ..+|  ..+..|.++.+++    +.+   .+|+.. 
T Consensus       148 VIGgG~~g~E~A~~L~~~g~~Vtli~~~~~-~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~  226 (555)
T TIGR03143       148 VIGGGFAAAEEAVFLTRYASKVTVIVREPD-FTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITE  226 (555)
T ss_pred             EECCCHHHHHHHHHHHccCCEEEEEEeCCc-cccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEE
Confidence            999999999999999999999999999543 210       01 1233  3456677876543    222   356543 


Q ss_pred             ---eccE----EEEccccccccccccccCCccccccc
Q psy810          185 ---PFDS----IIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       185 ---~~D~----vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                         ++|.    ||+|+| ++||+  .++.. +++++.
T Consensus       227 ~~~~~D~~~~~Vi~a~G-~~Pn~--~l~~~-~l~l~~  259 (555)
T TIGR03143       227 YKAPKDAGTFGVFVFVG-YAPSS--ELFKG-VVELDK  259 (555)
T ss_pred             EeccccccceEEEEEeC-CCCCh--hHHhh-hcccCC
Confidence               3676    999999 99999  88765 566653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.63  E-value=5.8e-16  Score=139.13  Aligned_cols=164  Identities=14%  Similarity=0.181  Sum_probs=127.9

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----  114 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----  114 (227)
                      +.+++.+.+.+|..|.+     +...|.++.+..+.||++|+|||+  .|++||+||.+...  ++-+.++.+.+     
T Consensus        71 ~~~i~L~~~~~v~~idr-----~~k~V~t~~g~~~~YDkLilATGS--~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~  141 (793)
T COG1251          71 ENGITLYTGEKVIQIDR-----ANKVVTTDAGRTVSYDKLIIATGS--YPFILPIPGSDLPG--VFVYRTIDDVEAMLDC  141 (793)
T ss_pred             HcCcEEEcCCeeEEecc-----CcceEEccCCcEeecceeEEecCc--cccccCCCCCCCCC--eeEEecHHHHHHHHHH
Confidence            56788999999999987     678899999999999999999999  99999999987533  23333333221     


Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeC----Cc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ----DS  175 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~----~~  175 (227)
                      .-..++-+|||||--|+|.|..|.+.|-++++++-.+..+..++.               -++..+.+.+++.+    .+
T Consensus       142 ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~  221 (793)
T COG1251         142 ARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEG  221 (793)
T ss_pred             HhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceee
Confidence            113456899999999999999999999999999885554433332               24444544444433    35


Q ss_pred             eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          176 VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       176 v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                      +.|+||..+++|.|++|+| ++||.  .+....|+..++.
T Consensus       222 vr~~DG~~i~ad~VV~a~G-IrPn~--ela~~aGlavnrG  258 (793)
T COG1251         222 VRFADGTEIPADLVVMAVG-IRPND--ELAKEAGLAVNRG  258 (793)
T ss_pred             EeecCCCcccceeEEEecc-ccccc--HhHHhcCcCcCCC
Confidence            8999999999999999999 99999  9999999988873

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.52  E-value=2.1e-14  Score=122.71  Aligned_cols=106  Identities=18%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             eEEeCceEEEEEEeeCCC-CcEEEec----CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC--CC
Q psy810           44 EIKFGSSWAEIEKFSVPT-KCLHFAN----EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--PF  116 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~-~~~~v~~----~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~  116 (227)
                      .++++++|.+|+...... ..|+|.+    +++..+.+++||+|||.  .|.+|++-........++|+.++....  ..
T Consensus       111 ~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~--~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~  188 (341)
T PF13434_consen  111 QVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG--QPRIPEWFQDLPGSPRVFHSSEYLSRIDQSL  188 (341)
T ss_dssp             TEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE------EE---GGGGGGTT-TTEEEGGGHHHHHT---
T ss_pred             ceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC--CCCCCcchhhcCCCCCEEEehHhhhcccccc
Confidence            488999999999765311 3589987    46789999999999998  889887643211124688988766542  45


Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~  151 (227)
                      .+++|+|||||.||+|++..|.+.+.  +|++++|+.
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            67899999999999999999999864  899999964

>KOG4716|consensus

Probab=99.52  E-value=4.9e-14  Score=116.78  Aligned_cols=143  Identities=14%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+.+.+++++||||.  +|+.|++||..++   .+.+.+..+.....| +.+|||+|+.|+|+|.+|..+|-+||+..| 
T Consensus       157 ~~~~ta~~fvIatG~--RPrYp~IpG~~Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVR-  229 (503)
T KOG4716|consen  157 ERFLTAENFVIATGL--RPRYPDIPGAKEY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVR-  229 (503)
T ss_pred             eEEeecceEEEEecC--CCCCCCCCCceee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEE-
Confidence            567999999999999  9999999997764   355555544444344 467899999999999999999999999988 


Q ss_pred             Cccccc---cCC---------CceE--Ec---CCccEEeCCceE--E-----cCCCEEeccEEEEccccccccccccccC
Q psy810          151 SVAFKH---QIG---------DSVV--QK---PDIKRLLQDSVV--F-----QDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       151 ~~~~~~---~~~---------~~i~--~~---~~i~~~~~~~v~--~-----~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .-.++.   .+.         ..|.  ..   .+|+.+++..+.  .     .++.+-.+|.|+||+| ..+.++---|+
T Consensus       230 SI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiG-R~~~~~~l~L~  308 (503)
T KOG4716|consen  230 SILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIG-RKALTDDLNLD  308 (503)
T ss_pred             EeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhc-cccchhhcCCC
Confidence            333322   111         1222  22   234555444421  1     1223457999999999 77776222445


Q ss_pred             CcccccccCCCCCCCCC
Q psy810          207 TFSISMAMSTPDGPNPT  223 (227)
Q Consensus       207 ~~gl~~~~~~~~~~~~~  223 (227)
                      ..|++.+.  .++.+++
T Consensus       309 ~~GVk~n~--ks~KI~v  323 (503)
T KOG4716|consen  309 NAGVKTNE--KSGKIPV  323 (503)
T ss_pred             ccceeecc--cCCcccc
Confidence            66666543  3455544

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.50  E-value=2e-13  Score=121.03  Aligned_cols=135  Identities=14%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC------C--------CCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY------R--------VPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~------~--------~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..||+||||||+. .|..|++||.+. .+ +++..++      .        +.....+++|+|||+|++|+|+|..+.+
T Consensus       217 ~~yd~viiAtGa~-~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~  293 (449)
T TIGR01316       217 SQYDAVFIGTGAG-LPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALR  293 (449)
T ss_pred             hhCCEEEEeCCCC-CCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence            4699999999983 478888998653 11 1111111      0        1123468999999999999999999999


Q ss_pred             ccCeEEEEeecCcc-ccc-------cCCCceEE--cCCccEEeC--Cc----eEEc---------CC-----------CE
Q psy810          140 VAKNVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLLQ--DS----VVFQ---------DD-----------TS  183 (227)
Q Consensus       140 ~~~~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~~--~~----v~~~---------~g-----------~~  183 (227)
                      .|.+||+++|+... +..       ....+|.+  ...+.++.+  ++    +.+.         +|           ..
T Consensus       294 ~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~  373 (449)
T TIGR01316       294 LGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECK  373 (449)
T ss_pred             cCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEE
Confidence            99999999985421 100       00123333  345555532  11    3332         22           25


Q ss_pred             EeccEEEEccccccccccccccCCccccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +++|.||+|+| +.|++  .++++.+++++.
T Consensus       374 i~~D~Vi~AiG-~~p~~--~~l~~~gl~~~~  401 (449)
T TIGR01316       374 LEADAVIVAIG-NGSNP--IMAETTRLKTSE  401 (449)
T ss_pred             EECCEEEECCC-CCCCc--hhhhccCcccCC
Confidence            89999999999 99999  999988888874

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.49  E-value=2.8e-13  Score=116.49  Aligned_cols=166  Identities=13%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             ceeEEeCceEEEEEEe-eCCCCcEEEec--CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeec-------CCC-
Q psy810           42 CIEIKFGSSWAEIEKF-SVPTKCLHFAN--EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS-------HDY-  110 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~-~~~~~~~~v~~--~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~-------~~~-  110 (227)
                      ++++++++.+..+... ....+.+....  .++..+.||+||||||++ .|..|++||.+...  +...       ... 
T Consensus        82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~-~~~~~~ipg~~~~~--v~~~~~~~~~~~~~~  158 (352)
T PRK12770         82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW-KSRKLGIPGEDLPG--VYSALEYLFRIRAAK  158 (352)
T ss_pred             CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC-CCCcCCCCCccccC--ceeHHHHHHHhhhcc
Confidence            5577777777554320 11112222111  112247899999999993 26778888865311  1111       111 


Q ss_pred             ------CCCCCCCCCeEEEEccCccHHHHHHHHHhccCe-EEEEeecCccccccC---------CCceEE--cCCccEEe
Q psy810          111 ------RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVAFKHQI---------GDSVVQ--KPDIKRLL  172 (227)
Q Consensus       111 ------~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~~~~~~---------~~~i~~--~~~i~~~~  172 (227)
                            .....+.+++++|+|+|++|+|+|..|.+.+.+ |+++.++.. .....         ..+|.+  ...+.++.
T Consensus       159 ~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~  237 (352)
T PRK12770        159 LGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI-NEAPAGKYEIERLIARGVEFLELVTPVRII  237 (352)
T ss_pred             ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch-hhCCCCHHHHHHHHHcCCEEeeccCceeee
Confidence                  111234578999999999999999999888876 999988532 11101         123333  33455554


Q ss_pred             CCc----eEEc------------------C--CCEEeccEEEEccccccccccccccCC-ccccccc
Q psy810          173 QDS----VVFQ------------------D--DTSHPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM  214 (227)
Q Consensus       173 ~~~----v~~~------------------~--g~~i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~  214 (227)
                      +++    +.+.                  +  +..+++|.||+|+| ++|+.  .++.+ .|++++.
T Consensus       238 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G-~~p~~--~l~~~~~g~~~~~  301 (352)
T PRK12770        238 GEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG-EIPTP--PFAKECLGIELNR  301 (352)
T ss_pred             cCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc-cCCCc--hhhhcccCceecC
Confidence            321    2221                  2  24689999999999 99998  88776 7777764

>PRK12831 putative oxidoreductase; Provisional

Probab=99.46  E-value=4e-13  Score=119.53  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=90.1

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----------CC---CCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----------YR---VPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----------~~---~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      .+.||+|+||||++ .|+.|++||.+. .+ ++...+          ++   +.....+++|+|||||++|+|+|..+.+
T Consensus       226 ~~~~d~viiAtGa~-~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r  302 (464)
T PRK12831        226 EEGFDAVFIGSGAG-LPKFMGIPGENL-NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR  302 (464)
T ss_pred             ccCCCEEEEeCCCC-CCCCCCCCCcCC-cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHH
Confidence            35699999999983 377888998653 11 111111          11   1223468999999999999999999999


Q ss_pred             ccCeEEEEeecCcc-cccc-------CCCceEE--cCCccEEeC--Cc----eEEc------------------CCC--E
Q psy810          140 VAKNVFLSHHISVA-FKHQ-------IGDSVVQ--KPDIKRLLQ--DS----VVFQ------------------DDT--S  183 (227)
Q Consensus       140 ~~~~Vtli~~~~~~-~~~~-------~~~~i~~--~~~i~~~~~--~~----v~~~------------------~g~--~  183 (227)
                      +|.+||+++|+... +...       ....|++  ...+.++..  ++    +.+.                  +|+  .
T Consensus       303 ~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~  382 (464)
T PRK12831        303 LGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFV  382 (464)
T ss_pred             cCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEE
Confidence            99999999985421 1110       0123332  334445532  21    2221                  233  5


Q ss_pred             EeccEEEEccccccccccccccCC-ccccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM  214 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~  214 (227)
                      +++|.||+|+| +.|++  .++.+ .|++++.
T Consensus       383 i~~D~Vi~AiG-~~p~~--~~~~~~~gl~~~~  411 (464)
T PRK12831        383 LEVDTVIMSLG-TSPNP--LISSTTKGLKINK  411 (464)
T ss_pred             EECCEEEECCC-CCCCh--hhhcccCCceECC
Confidence            89999999999 99999  88876 6888764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.44  E-value=6.7e-13  Score=125.56  Aligned_cols=153  Identities=15%  Similarity=0.130  Sum_probs=95.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC------CCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV------PDP  115 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~------~~~  115 (227)
                      ++++++++.+ .+.            .++.....||+||||||++. |..+++||.+.   .+++...+..      ...
T Consensus       603 GVe~~~gt~V-di~------------le~L~~~gYDaVILATGA~~-~~~l~IpG~~~---gV~saldfL~~~k~~~~~~  665 (1019)
T PRK09853        603 GVKFEFGCSP-DLT------------VEQLKNEGYDYVVVAIGADK-NGGLKLEGGNQ---NVIKALPFLEEYKNKGTAL  665 (1019)
T ss_pred             CCEEEeCcee-EEE------------hhhheeccCCEEEECcCCCC-CCCCCCCCccC---CceehHHHHHHHhhhcccc
Confidence            5577777665 221            12233456999999999942 44557787542   1122211111      112


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhc-c-CeEEEEeecCccccc--------cCCCceEE--cCCccEEeCCc--------
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHISVAFKH--------QIGDSVVQ--KPDIKRLLQDS--------  175 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~~~~~~~--------~~~~~i~~--~~~i~~~~~~~--------  175 (227)
                      ..+++|+|||||++|+|+|..+.+. + .+|++++|+....-.        .+...|++  ...+.++..++        
T Consensus       666 ~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~  745 (1019)
T PRK09853        666 KLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMK  745 (1019)
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEE
Confidence            3589999999999999999998887 4 489999986432110        01123332  22333343111        


Q ss_pred             ------------eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 ------------VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 ------------v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                                  +...++..+++|.||+|+| +.|++  +|+.+.|++++.
T Consensus       746 lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG-~~Pnt--elle~~GL~ld~  793 (1019)
T PRK09853        746 LGEPDESGRRRPVETGETVTLEADTVITAIG-EQVDT--ELLKANGIPLDK  793 (1019)
T ss_pred             eecccCCCceEEeeCCCeEEEEeCEEEECCC-CcCCh--hHHHhcCccccC
Confidence                        1122335689999999999 99999  999988988764

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.42  E-value=8.9e-13  Score=117.19  Aligned_cols=135  Identities=17%  Similarity=0.177  Sum_probs=89.0

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC--------CCCCCCCCeEEEEccCccHHHHHHHHHhccC-eE
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR--------VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NV  144 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~V  144 (227)
                      +.||+||+|||+. .|..+++||.+. .+ +++...+.        ......+++|+|||+|++|+|+|..+.+.+. +|
T Consensus       224 ~~~d~vvlAtGa~-~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~V  300 (457)
T PRK11749        224 AGYDAVFIGTGAG-LPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESV  300 (457)
T ss_pred             hhCCEEEEccCCC-CCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence            7899999999993 256678888653 11 12211111        1112358999999999999999999999876 89


Q ss_pred             EEEeecCcc-cccc-------CCCceE--EcCCccEEeCCc-----eEEc-------------------CCCEEeccEEE
Q psy810          145 FLSHHISVA-FKHQ-------IGDSVV--QKPDIKRLLQDS-----VVFQ-------------------DDTSHPFDSII  190 (227)
Q Consensus       145 tli~~~~~~-~~~~-------~~~~i~--~~~~i~~~~~~~-----v~~~-------------------~g~~i~~D~vi  190 (227)
                      |+++++... +...       ...+|+  ....+.++.+++     |++.                   ++.++++|.||
T Consensus       301 tlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi  380 (457)
T PRK11749        301 TIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVI  380 (457)
T ss_pred             EEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEE
Confidence            999985421 1110       012333  345666665332     5442                   22368999999


Q ss_pred             EccccccccccccccC-Cccccccc
Q psy810          191 YCTGAYKYSYKLTFLA-TFSISMAM  214 (227)
Q Consensus       191 ~atG~~~~~~~~~~l~-~~gl~~~~  214 (227)
                      +|+| ++|+.  .++. ..+++++.
T Consensus       381 ~a~G-~~p~~--~l~~~~~gl~~~~  402 (457)
T PRK11749        381 KAIG-QTPNP--LILSTTPGLELNR  402 (457)
T ss_pred             ECcc-CCCCc--hhhccccCccCCC
Confidence            9999 99998  7765 56676654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.39  E-value=1.7e-12  Score=121.76  Aligned_cols=137  Identities=16%  Similarity=0.144  Sum_probs=88.5

Q ss_pred             eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----------CC---CCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----------YR---VPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----------~~---~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ....||+||||||++ .|+.|++||.+. .+ +++..+          ++   +.....+++|+|||||++|+|+|..+.
T Consensus       514 ~~~~ydavvlAtGa~-~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~  590 (752)
T PRK12778        514 EEEGFKGIFIASGAG-LPNFMNIPGENS-NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAK  590 (752)
T ss_pred             hhcCCCEEEEeCCCC-CCCCCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHH
Confidence            456799999999993 377888998653 11 111111          11   112246899999999999999999999


Q ss_pred             hccCe-EEEEeecCcc-cccc-------CCCceEE--cCCccEEeC--Cc----eEEc---------C---------CC-
Q psy810          139 KVAKN-VFLSHHISVA-FKHQ-------IGDSVVQ--KPDIKRLLQ--DS----VVFQ---------D---------DT-  182 (227)
Q Consensus       139 ~~~~~-Vtli~~~~~~-~~~~-------~~~~i~~--~~~i~~~~~--~~----v~~~---------~---------g~-  182 (227)
                      +.|.+ ||+++++... +...       ....|++  ...+.++..  ++    +.+.         +         |+ 
T Consensus       591 r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~  670 (752)
T PRK12778        591 RLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGST  670 (752)
T ss_pred             HcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCe
Confidence            99886 9999986431 1110       0123333  334444431  11    2321         1         22 


Q ss_pred             -EEeccEEEEccccccccccccccCCc-cccccc
Q psy810          183 -SHPFDSIIYCTGAYKYSYKLTFLATF-SISMAM  214 (227)
Q Consensus       183 -~i~~D~vi~atG~~~~~~~~~~l~~~-gl~~~~  214 (227)
                       .+++|.||+|+| +.|+.  .++... +++++.
T Consensus       671 ~~i~~D~Vi~A~G-~~p~~--~l~~~~~gl~~~~  701 (752)
T PRK12778        671 FTVDVDLVIVSVG-VSPNP--LVPSSIPGLELNR  701 (752)
T ss_pred             EEEECCEEEECcC-CCCCc--cccccccCceECC
Confidence             489999999999 99998  777654 777764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.32  E-value=1.5e-11  Score=113.61  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=87.4

Q ss_pred             EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-----CCCCCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEe
Q psy810           75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-----RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSH  148 (227)
Q Consensus        75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~  148 (227)
                      .||+|++|||++. +..+++||.+. .+ ++....+     .......+++|+|||+|++|+|+|..+.+.|. +||+++
T Consensus       278 ~~DaVilAtGa~~-~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~  354 (652)
T PRK12814        278 EFDAVLLAVGAQK-ASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY  354 (652)
T ss_pred             hcCEEEEEcCCCC-CCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence            5999999999932 34567888653 22 1111111     12233468999999999999999999998875 699999


Q ss_pred             ecCcc-ccc-------cCCCceE--EcCCccEEeC--Cce-----EEc---------------CCC--EEeccEEEEccc
Q psy810          149 HISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DSV-----VFQ---------------DDT--SHPFDSIIYCTG  194 (227)
Q Consensus       149 ~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~v-----~~~---------------~g~--~i~~D~vi~atG  194 (227)
                      |+... +..       .+...|.  ....+.++.+  +++     .+.               +|+  .+++|.||+|+|
T Consensus       355 r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG  434 (652)
T PRK12814        355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG  434 (652)
T ss_pred             ecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC
Confidence            86431 111       0112232  3334444432  111     111               233  489999999999


Q ss_pred             cccccccccccCCccccccc
Q psy810          195 AYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       195 ~~~~~~~~~~l~~~gl~~~~  214 (227)
                       +.|++  .|+...|++++.
T Consensus       435 -~~p~~--~ll~~~gl~~~~  451 (652)
T PRK12814        435 -QQVDP--PIAEAAGIGTSR  451 (652)
T ss_pred             -CcCCc--ccccccCccccC
Confidence             99999  999988888764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.31  E-value=8.9e-12  Score=105.88  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEE--EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCccc-ceeeecCCCCCC-CCCCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLH--FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFR-GLQMHSHDYRVP-DPFRD  118 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~--v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~-~~~~~~~~~~~~-~~~~~  118 (227)
                      -..+|+++|..|...+.+ ....  +.+.++..+.+++||+++|.  .|++|+.  ..... ..++|+.++... .+...
T Consensus       112 ~~~rfg~~V~~i~~~~~d-~~~~~~~~t~~~~~y~ar~lVlg~G~--~P~IP~~--f~~l~~~~vfHss~~~~~~~~~~~  186 (436)
T COG3486         112 PSLRFGEEVTDISSLDGD-AVVRLFVVTANGTVYRARNLVLGVGT--QPYIPPC--FRSLIGERVFHSSEYLERHPELLQ  186 (436)
T ss_pred             CccccCCeeccccccCCc-ceeEEEEEcCCCcEEEeeeEEEccCC--CcCCChH--HhCcCccceeehHHHHHhhHHhhc
Confidence            467889999977443322 2233  45566669999999999999  9999853  11222 357888877643 34444


Q ss_pred             Ce-EEEEccCccHHHHHHHHHhc----cCeEEEEeecC
Q psy810          119 QN-VLLVGFGPSGVDIAMDIEKV----AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~-v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~  151 (227)
                      ++ |.|||+|.||+|+..+|...    ..++.|++|+.
T Consensus       187 ~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~  224 (436)
T COG3486         187 KRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS  224 (436)
T ss_pred             CceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC
Confidence            44 99999999999999998875    23588899964

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.31  E-value=8.8e-12  Score=118.86  Aligned_cols=143  Identities=13%  Similarity=0.203  Sum_probs=89.3

Q ss_pred             EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC---------------CCCCCCCCeEEEEccCccH
Q psy810           66 FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR---------------VPDPFRDQNVLLVGFGPSG  130 (227)
Q Consensus        66 v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~v~VvGgG~~g  130 (227)
                      ++.++.....||+|+||||++ .|+.+++||.+. .+ ++...++.               ......+|+|+|||||++|
T Consensus       383 it~~~l~~~~yDAV~LAtGA~-~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA  459 (944)
T PRK12779        383 ATLEDLKAAGFWKIFVGTGAG-LPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA  459 (944)
T ss_pred             EeHHHhccccCCEEEEeCCCC-CCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence            444554456799999999994 377889998643 21 11111111               0112368999999999999


Q ss_pred             HHHHHHHHhccCeEEEEeecCcc-ccc-------cCCCceEE--cCCccEEeCC--c--e---EE---------------
Q psy810          131 VDIAMDIEKVAKNVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLLQD--S--V---VF---------------  178 (227)
Q Consensus       131 ~e~a~~l~~~~~~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~~~--~--v---~~---------------  178 (227)
                      +|+|..+.+.|.+||+++|+... +..       .....+.+  ...+.++..+  +  +   .+               
T Consensus       460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~  539 (944)
T PRK12779        460 MDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRS  539 (944)
T ss_pred             HHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCcee
Confidence            99999999999999999986421 110       01123332  2344444321  1  1   11               


Q ss_pred             --cCCC--EEeccEEEEccccccccccccccC-Cccccccc
Q psy810          179 --QDDT--SHPFDSIIYCTGAYKYSYKLTFLA-TFSISMAM  214 (227)
Q Consensus       179 --~~g~--~i~~D~vi~atG~~~~~~~~~~l~-~~gl~~~~  214 (227)
                        .+|+  .+++|.||+|+| +.|+.  .+.. ..+++++.
T Consensus       540 ~~~~G~e~~i~aD~VI~AiG-~~p~~--~l~~~~~gle~~~  577 (944)
T PRK12779        540 PKPTGEIERVPVDLVIMALG-NTANP--IMKDAEPGLKTNK  577 (944)
T ss_pred             eecCCceEEEECCEEEEcCC-cCCCh--hhhhcccCceECC
Confidence              1233  489999999999 99987  5432 34666653

>KOG1346|consensus

Probab=99.26  E-value=1.6e-11  Score=104.50  Aligned_cols=164  Identities=10%  Similarity=0.065  Sum_probs=108.1

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCC-CCCC-cccceeeecCCCCCCCCC---
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSY-EGAD-LFRGLQMHSHDYRVPDPF---  116 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~-~g~~-~~~~~~~~~~~~~~~~~~---  116 (227)
                      ++-+..+-+|+.|+.     ....|.+++|..+.||.++||||.  +|+-.++ ..+. +...++..+....+...+   
T Consensus       271 GvAvl~G~kvvkid~-----~d~~V~LnDG~~I~YdkcLIATG~--~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~  343 (659)
T KOG1346|consen  271 GVAVLRGRKVVKIDE-----EDKKVILNDGTTIGYDKCLIATGV--RPKKLQVFEEASEEVKQKITYFRYPADFKRLEKG  343 (659)
T ss_pred             ceEEEeccceEEeec-----ccCeEEecCCcEeehhheeeecCc--CcccchhhhhcCHHhhhheeEEecchHHHHHHHh
Confidence            455566667776664     335678899999999999999999  7774432 2211 122233322211111110   


Q ss_pred             --CCCeEEEEccCccHHHHHHHHHhc----cCeEEEEeecCccccccCCC-------------ceEE--cCCccEEeCC-
Q psy810          117 --RDQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHISVAFKHQIGD-------------SVVQ--KPDIKRLLQD-  174 (227)
Q Consensus       117 --~~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~~~~~~~~~~-------------~i~~--~~~i~~~~~~-  174 (227)
                        ..++|.|||+|+.|.|+|+.|.+.    |.+|+-+-.....+...+|.             .+..  +..|+.+... 
T Consensus       344 ~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~  423 (659)
T KOG1346|consen  344 LAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC  423 (659)
T ss_pred             hhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc
Confidence              137899999999999999999875    55776554433333333442             2222  2234444321 


Q ss_pred             -c--eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          175 -S--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       175 -~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                       .  +.+.||.++..|+|++|+| -.||+  .+.+..||+.|..
T Consensus       424 ~nl~lkL~dG~~l~tD~vVvavG-~ePN~--ela~~sgLeiD~~  464 (659)
T KOG1346|consen  424 KNLVLKLSDGSELRTDLVVVAVG-EEPNS--ELAEASGLEIDEK  464 (659)
T ss_pred             cceEEEecCCCeeeeeeEEEEec-CCCch--hhcccccceeecc
Confidence             2  6788999999999999999 99999  9999999999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.26  E-value=3.4e-11  Score=115.91  Aligned_cols=134  Identities=10%  Similarity=0.006  Sum_probs=93.2

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC---CCCC-CCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEE
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH---DYRV-PDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLS  147 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~---~~~~-~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli  147 (227)
                      .+.||+||||||+  .++.|++||.+. ++. +...   .+.. .....+++|+|+|+|++|+|+|..|.+.| ..|+++
T Consensus       272 ~i~a~~VILATGa--~~r~~pipG~~~-pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv  347 (985)
T TIGR01372       272 RIRAKRVVLATGA--HERPLVFANNDR-PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII  347 (985)
T ss_pred             EEEcCEEEEcCCC--CCcCCCCCCCCC-CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence            6899999999999  778889998654 221 1111   1111 12346899999999999999999999998 467888


Q ss_pred             eecCcccc---ccC-CCceE--EcCCccEEeCC----ceEEc----CCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          148 HHISVAFK---HQI-GDSVV--QKPDIKRLLQD----SVVFQ----DDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       148 ~~~~~~~~---~~~-~~~i~--~~~~i~~~~~~----~v~~~----~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ++++....   ..+ ..+|.  ....+.++.++    +|++.    +++++++|.|++++| +.||+  .++..++.++.
T Consensus       348 ~~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G-~~Pnt--~L~~~lg~~~~  424 (985)
T TIGR01372       348 DARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGG-WTPVV--HLFSQRGGKLA  424 (985)
T ss_pred             ccCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCC-cCchh--HHHHhcCCCee
Confidence            77432211   011 12333  34556677654    35554    445789999999999 99999  99988886654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.24  E-value=2.6e-11  Score=115.30  Aligned_cols=135  Identities=15%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC----CCCC--CCCCCCeEEEEccCccHHHHHHHHHhc-c-CeE
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD----YRVP--DPFRDQNVLLVGFGPSGVDIAMDIEKV-A-KNV  144 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~----~~~~--~~~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~V  144 (227)
                      ...||+|+||||++. +..++++|....   .+....    +.+.  ....+++|+|||||++|+|+|..+.+. | .+|
T Consensus       619 ~~gYDaVIIATGA~~-~~~l~I~G~~~~---v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kV  694 (1012)
T TIGR03315       619 NQGYKYVILAIGAWK-HGPLRLEGGGER---VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKV  694 (1012)
T ss_pred             cccccEEEECCCCCC-CCCCCcCCCCcc---eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceE
Confidence            456999999999942 344567774321   111111    1111  223589999999999999999998876 5 489


Q ss_pred             EEEeecCccc-cc-------cCCCceEE--cCCccEEeCCceE-----------------EcCCC--EEeccEEEEcccc
Q psy810          145 FLSHHISVAF-KH-------QIGDSVVQ--KPDIKRLLQDSVV-----------------FQDDT--SHPFDSIIYCTGA  195 (227)
Q Consensus       145 tli~~~~~~~-~~-------~~~~~i~~--~~~i~~~~~~~v~-----------------~~~g~--~i~~D~vi~atG~  195 (227)
                      ++++|+.... ..       .+...|++  ...+.++.++.++                 ..+|+  .+++|.||+|+| 
T Consensus       695 tLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG-  773 (1012)
T TIGR03315       695 TVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVG-  773 (1012)
T ss_pred             EEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecC-
Confidence            9999864321 10       01123332  2233333322211                 12344  589999999999 


Q ss_pred             ccccccccccCCccccccc
Q psy810          196 YKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       196 ~~~~~~~~~l~~~gl~~~~  214 (227)
                      +.|++  .+++..|++++.
T Consensus       774 ~~Pnt--~lle~~GL~ld~  790 (1012)
T TIGR03315       774 EQVDT--DLLQKNGIPLDE  790 (1012)
T ss_pred             CcCCh--HHHHhcCcccCC
Confidence            99999  999988888765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.24  E-value=1.4e-10  Score=103.58  Aligned_cols=135  Identities=18%  Similarity=0.193  Sum_probs=85.4

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC-C-------------CCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH-D-------------YRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~-~-------------~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..||+|++|||+. .|..+++||.+. .+  +++. +             ........+++|+|||+|++|+|+|..+.+
T Consensus       227 ~~~d~vvlAtGa~-~~~~l~ipG~~~-~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~  302 (471)
T PRK12810        227 AEYDAVFLGTGAY-KPRDLGIPGRDL-DG--VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIR  302 (471)
T ss_pred             hhCCEEEEecCCC-CCCcCCCCCccC-CC--cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHH
Confidence            5799999999993 156678888653 21  1111 0             011123468999999999999999998888


Q ss_pred             cc-CeEEEEeecCcccccc------------------CCCce--EEcCCccEEeC-C-c---eEE-----cCC-------
Q psy810          140 VA-KNVFLSHHISVAFKHQ------------------IGDSV--VQKPDIKRLLQ-D-S---VVF-----QDD-------  181 (227)
Q Consensus       140 ~~-~~Vtli~~~~~~~~~~------------------~~~~i--~~~~~i~~~~~-~-~---v~~-----~~g-------  181 (227)
                      .+ ++||+..+........                  ....+  .....+.++.+ + .   |.+     .+|       
T Consensus       303 ~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g  382 (471)
T PRK12810        303 QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEG  382 (471)
T ss_pred             cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCC
Confidence            76 4799775532111110                  01122  23445666643 2 1   222     222       


Q ss_pred             --CEEeccEEEEccccccccccccccCCccccccc
Q psy810          182 --TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       182 --~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                        .++++|.||+|+| +.|+. ..|++.++++++.
T Consensus       383 ~~~~i~~D~VI~A~G-~~p~~-~~l~~~~gl~~~~  415 (471)
T PRK12810        383 SEFVLPADLVLLAMG-FTGPE-AGLLAQFGVELDE  415 (471)
T ss_pred             ceEEEECCEEEECcC-cCCCc-hhhccccCcccCC
Confidence              3589999999999 99984 0488888888764

>KOG2495|consensus

Probab=99.24  E-value=2.3e-11  Score=103.74  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             eEEEcCEEEEccCCCCCCCCCCCCCCCccc---cee----------eecC---CC---CCCCCCCCCeEEEEccCccHHH
Q psy810           72 TLHYNLLQSLPSSHNSVPNIPSYEGADLFR---GLQ----------MHSH---DY---RVPDPFRDQNVLLVGFGPSGVD  132 (227)
Q Consensus        72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~~~---~~~----------~~~~---~~---~~~~~~~~~~v~VvGgG~~g~e  132 (227)
                      ..+.||++|+|+|+  .++.+.+||..++.   -.+          ++..   ..   .+.+.-+--|++|||||++|+|
T Consensus       155 ~~i~YDyLViA~GA--~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVE  232 (491)
T KOG2495|consen  155 FVIGYDYLVIAVGA--EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVE  232 (491)
T ss_pred             eeecccEEEEeccC--CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCccee
Confidence            68999999999999  88999999876521   000          0000   00   0111112237999999999999


Q ss_pred             HHHHHHhc--------------cCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCceEEcCC--
Q psy810          133 IAMDIEKV--------------AKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDSVVFQDD--  181 (227)
Q Consensus       133 ~a~~l~~~--------------~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~v~~~~g--  181 (227)
                      +|.+|+..              -.+|||+...+ .+.+.+.             .  ++..++.+..+++..++.+++  
T Consensus       233 FAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d-~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g  311 (491)
T KOG2495|consen  233 FAAELADFIPEDLRKIYPELKKDIKVTLIEAAD-HILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDG  311 (491)
T ss_pred             ehHHHHHHHHHHHHHhhhcchhheEEEeeccch-hHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCC
Confidence            99999864              13589998843 2221121             2  444556788888888777654  


Q ss_pred             --CEEeccEEEEcccccccc
Q psy810          182 --TSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       182 --~~i~~D~vi~atG~~~~~  199 (227)
                        ++||+-+++|+|| ..+.
T Consensus       312 ~~~~iPYG~lVWatG-~~~r  330 (491)
T KOG2495|consen  312 EIEEIPYGLLVWATG-NGPR  330 (491)
T ss_pred             ceeeecceEEEecCC-CCCc
Confidence              5699999999999 7665

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.23  E-value=3.2e-11  Score=104.94  Aligned_cols=155  Identities=15%  Similarity=0.081  Sum_probs=109.5

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC---
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF---  116 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~---  116 (227)
                      ..+++++.+++|.++..     ....+.+.++ .+.||++++|||+  .|..++  +.  ............+...+   
T Consensus        65 ~~~i~~~~~~~v~~id~-----~~~~v~~~~g-~~~yd~LvlatGa--~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~  132 (415)
T COG0446          65 ATGIDVRTGTEVTSIDP-----ENKVVLLDDG-EIEYDYLVLATGA--RPRPPP--IS--DWEGVVTLRLREDAEALKGG  132 (415)
T ss_pred             hhCCEEeeCCEEEEecC-----CCCEEEECCC-cccccEEEEcCCC--cccCCC--cc--ccCceEEECCHHHHHHHHHH
Confidence            34668888899999875     5566777777 8999999999999  777766  21  11111222222222111   


Q ss_pred             --CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccC-C------------Cc--eEEcCCccEEeCCc----
Q psy810          117 --RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI-G------------DS--VVQKPDIKRLLQDS----  175 (227)
Q Consensus       117 --~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~-~------------~~--i~~~~~i~~~~~~~----  175 (227)
                        ..++++|+|+|..|+++|..+.+.|.+|++++..+......+ +            ..  +..+..+.+++.+.    
T Consensus       133 ~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~  212 (415)
T COG0446         133 AEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLV  212 (415)
T ss_pred             HhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcce
Confidence              147899999999999999999999999999998654433322 2            12  44566777776542    


Q ss_pred             ---eEEcCCCEEeccEEEEccccccccccccccCCcc
Q psy810          176 ---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFS  209 (227)
Q Consensus       176 ---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~g  209 (227)
                         +...++..+++|.+++++| .+||.  .+..+.+
T Consensus       213 ~~~~~~~~~~~~~~d~~~~~~g-~~p~~--~l~~~~~  246 (415)
T COG0446         213 VERVVGIDGEEIKADLVIIGPG-ERPNV--VLANDAL  246 (415)
T ss_pred             eeEEEEeCCcEEEeeEEEEeec-ccccH--HHHhhCc
Confidence               4777888999999999999 99997  6666554

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.20  E-value=1.7e-10  Score=110.98  Aligned_cols=135  Identities=11%  Similarity=0.066  Sum_probs=86.9

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC--------------CCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH--------------DYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..||+||||||++ .|+.|++||.+. .+ +++..              .+++.....+++|+|||||++|+|+|..+.+
T Consensus       516 ~~yDaViIATGa~-~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~r  592 (1006)
T PRK12775        516 KGFDAVFLGVGAG-APTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKR  592 (1006)
T ss_pred             cCCCEEEEecCCC-CCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHH
Confidence            4699999999993 367889998643 11 22222              1222333468999999999999999999999


Q ss_pred             ccC-eEEEEeecCcc-ccc-------cCCCceEE--cCCccEEe--CCc----eEEc-----------------CCC--E
Q psy810          140 VAK-NVFLSHHISVA-FKH-------QIGDSVVQ--KPDIKRLL--QDS----VVFQ-----------------DDT--S  183 (227)
Q Consensus       140 ~~~-~Vtli~~~~~~-~~~-------~~~~~i~~--~~~i~~~~--~~~----v~~~-----------------~g~--~  183 (227)
                      .|. .|+++.|+... +..       ....+|.+  ...+.++.  +++    +.+.                 +|+  .
T Consensus       593 lGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~  672 (1006)
T PRK12775        593 LGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD  672 (1006)
T ss_pred             cCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence            876 58998875321 110       00123333  33444553  122    2221                 222  4


Q ss_pred             EeccEEEEccccccccccccccCC-ccccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLAT-FSISMAM  214 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~-~gl~~~~  214 (227)
                      +++|.||+|+| +.||.  .++.. .+++++.
T Consensus       673 i~~D~Vi~AiG-~~p~~--~~~~~~~gl~l~~  701 (1006)
T PRK12775        673 LECDTVIYALG-TKANP--IITQSTPGLALNK  701 (1006)
T ss_pred             EEcCEEEECCC-cCCCh--hhhhccCCcccCC
Confidence            89999999999 99998  77654 3677654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.16  E-value=5e-10  Score=99.86  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC-----------CCC---C--CCCCCCCeEEEEccCccHHHHHHHH
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH-----------DYR---V--PDPFRDQNVLLVGFGPSGVDIAMDI  137 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~-----------~~~---~--~~~~~~~~v~VvGgG~~g~e~a~~l  137 (227)
                      ..||+||+|||+.. +..+++||.+. .+ +.+..           ...   .  .....+++++|+|+|++|+++|..+
T Consensus       225 ~~~D~vilAtGa~~-~~~~~i~g~~~-~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a  301 (467)
T TIGR01318       225 EDYDAVFLGVGTYR-SMRGGLPGEDA-PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTA  301 (467)
T ss_pred             hcCCEEEEEeCCCC-CCcCCCCCcCC-CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHH
Confidence            47999999999932 13457888653 11 11100           010   0  1124589999999999999999999


Q ss_pred             Hhcc-CeEEEEeecCcc-ccc-------cCCCceE--EcCCccEEeC--Cc----eEEc---------C---------C-
Q psy810          138 EKVA-KNVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DS----VVFQ---------D---------D-  181 (227)
Q Consensus       138 ~~~~-~~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~----v~~~---------~---------g-  181 (227)
                      .+++ .+||+++|++.. +..       .....|.  ....+.++..  ++    +++.         +         | 
T Consensus       302 ~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~  381 (467)
T TIGR01318       302 IRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGS  381 (467)
T ss_pred             HHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCc
Confidence            8887 579999985432 110       0012333  3445556532  11    2221         1         2 


Q ss_pred             -CEEeccEEEEccccccccccccccCCccccccc
Q psy810          182 -TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       182 -~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       ..+++|.||+|+| +.|+. ..+++..+++++.
T Consensus       382 ~~~i~~D~Vi~a~G-~~p~~-~~~~~~~gl~~~~  413 (467)
T TIGR01318       382 EFVLPADVVIMAFG-FQPHA-MPWLAGHGITLDS  413 (467)
T ss_pred             eEEEECCEEEECCc-CCCCc-cccccccCccCCC
Confidence             2589999999999 99983 0578888887764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.15  E-value=7.2e-10  Score=99.29  Aligned_cols=135  Identities=15%  Similarity=0.131  Sum_probs=85.4

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecC---------CCCC-------CCCCCCCeEEEEccCccHHHHHHH
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSH---------DYRV-------PDPFRDQNVLLVGFGPSGVDIAMD  136 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~---------~~~~-------~~~~~~~~v~VvGgG~~g~e~a~~  136 (227)
                      ...||+|++|||+. .|..|++||.+. .+  +++.         ...+       .....+|+|+|||+|++|+|+|..
T Consensus       226 ~~~~d~VilAtGa~-~~~~l~i~G~~~-~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~  301 (485)
T TIGR01317       226 KEQFDAVVLAGGAT-KPRDLPIPGREL-KG--IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGT  301 (485)
T ss_pred             HhhCCEEEEccCCC-CCCcCCCCCcCC-CC--cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHH
Confidence            35799999999993 267788998653 22  2211         0111       112468999999999999999877


Q ss_pred             HHhcc-CeEEEEeecCccccc-----c-------------CCC-----c---eEEcCCccEEeCC---c---eEE-----
Q psy810          137 IEKVA-KNVFLSHHISVAFKH-----Q-------------IGD-----S---VVQKPDIKRLLQD---S---VVF-----  178 (227)
Q Consensus       137 l~~~~-~~Vtli~~~~~~~~~-----~-------------~~~-----~---i~~~~~i~~~~~~---~---v~~-----  178 (227)
                      +.+.+ .+|+++++.+.....     .             ...     .   +.....+.++.++   .   +.+     
T Consensus       302 a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~  381 (485)
T TIGR01317       302 SLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEW  381 (485)
T ss_pred             HHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEe
Confidence            77764 689999864321100     0             001     0   1123334444321   1   221     


Q ss_pred             ---cCCC-----------EEeccEEEEcccccc-ccccccccCCccccccc
Q psy810          179 ---QDDT-----------SHPFDSIIYCTGAYK-YSYKLTFLATFSISMAM  214 (227)
Q Consensus       179 ---~~g~-----------~i~~D~vi~atG~~~-~~~~~~~l~~~gl~~~~  214 (227)
                         .+|.           ++++|.||+|+| +. |++  .|++..+++++.
T Consensus       382 ~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG-~~~p~~--~~~~~~gl~~~~  429 (485)
T TIGR01317       382 KKSQDGKWQFVEIPGSEEVFEADLVLLAMG-FVGPEQ--ILLDDFGVKKTR  429 (485)
T ss_pred             ccCCCCCccceecCCceEEEECCEEEEccC-cCCCcc--ccccccCcccCC
Confidence               1232           589999999999 86 889  999988888764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.10  E-value=1.8e-09  Score=100.10  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=85.3

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeec--------------CCCCC--CCCCCCCeEEEEccCccHHHHHHHH
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS--------------HDYRV--PDPFRDQNVLLVGFGPSGVDIAMDI  137 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~--------------~~~~~--~~~~~~~~v~VvGgG~~g~e~a~~l  137 (227)
                      ..||+|++|||++. +..+++||.+. .|. +..              ....+  .....+++|+|||||++|+|+|..+
T Consensus       411 ~~~DavilAtGa~~-~~~l~i~g~~~-~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a  487 (654)
T PRK12769        411 EDYDAVFVGVGTYR-SMKAGLPNEDA-PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTA  487 (654)
T ss_pred             hcCCEEEEeCCCCC-CCCCCCCCCCC-CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHH
Confidence            46999999999943 34457777543 221 110              00101  1124689999999999999999988


Q ss_pred             HhccC-eEEEEeecCcc-ccc-------cCCCceE--EcCCccEEe--CCc----eEEc---------C---------CC
Q psy810          138 EKVAK-NVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLL--QDS----VVFQ---------D---------DT  182 (227)
Q Consensus       138 ~~~~~-~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~--~~~----v~~~---------~---------g~  182 (227)
                      .+.+. +||+++++... +..       .....|.  ....+.++.  +++    |.+.         +         |+
T Consensus       488 ~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~  567 (654)
T PRK12769        488 LRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGS  567 (654)
T ss_pred             HHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCc
Confidence            88864 79999985432 110       0012333  334555553  221    2321         1         22


Q ss_pred             --EEeccEEEEccccccccccccccCCccccccc
Q psy810          183 --SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       183 --~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                        .+++|.||+|+| +.|+. ..+++..+++++.
T Consensus       568 ~~~i~~D~Vi~AiG-~~p~~-~~~~~~~gl~~~~  599 (654)
T PRK12769        568 EFVMPADAVIMAFG-FNPHG-MPWLESHGVTVDK  599 (654)
T ss_pred             eEEEECCEEEECcc-CCCCc-cccccccCCcCCC
Confidence              489999999999 99984 1588888888875

>PRK13984 putative oxidoreductase; Provisional

Probab=99.04  E-value=8.5e-10  Score=101.41  Aligned_cols=128  Identities=15%  Similarity=0.180  Sum_probs=77.2

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC---------CC-CCCCCCeEEEEccCccHHHHHHHHHhcc--
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR---------VP-DPFRDQNVLLVGFGPSGVDIAMDIEKVA--  141 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~---------~~-~~~~~~~v~VvGgG~~g~e~a~~l~~~~--  141 (227)
                      ..||+||+|||+. .|+.+++||.+.. + ++...++.         +. ....+++|+|||||++|+|+|..+.+.+  
T Consensus       367 ~~yD~vilAtGa~-~~r~l~i~G~~~~-g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~  443 (604)
T PRK13984        367 EKHDAVFLSTGFT-LGRSTRIPGTDHP-D-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKM  443 (604)
T ss_pred             hcCCEEEEEcCcC-CCccCCCCCcCCc-C-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhcccc
Confidence            5799999999993 2567788886531 1 11111110         11 1224789999999999999999998874  


Q ss_pred             ----CeEEEEeecC--ccccc-------cCCCceEE--cCCccEEeC-C----ceEEc--------CC-----------C
Q psy810          142 ----KNVFLSHHIS--VAFKH-------QIGDSVVQ--KPDIKRLLQ-D----SVVFQ--------DD-----------T  182 (227)
Q Consensus       142 ----~~Vtli~~~~--~~~~~-------~~~~~i~~--~~~i~~~~~-~----~v~~~--------~g-----------~  182 (227)
                          .+|+++....  ..+..       .....|.+  ...+.++.. +    ++.+.        +|           .
T Consensus       444 ~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~  523 (604)
T PRK13984        444 EYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQI  523 (604)
T ss_pred             ccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceE
Confidence                3788875321  11110       01123333  223434421 1    12221        12           3


Q ss_pred             EEeccEEEEccccccccccccccCC
Q psy810          183 SHPFDSIIYCTGAYKYSYKLTFLAT  207 (227)
Q Consensus       183 ~i~~D~vi~atG~~~~~~~~~~l~~  207 (227)
                      ++++|.||+|+| +.||+  .+|..
T Consensus       524 ~i~aD~Vi~aiG-~~p~~--~~l~~  545 (604)
T PRK13984        524 IVEADMVVEAIG-QAPDY--SYLPE  545 (604)
T ss_pred             EEECCEEEEeeC-CCCCh--hhhhh
Confidence            589999999999 99999  88763

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.95  E-value=1.4e-08  Score=93.87  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeec-----------CCCCC-----CCCCCCCeEEEEccCccHHHHHHHH
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHS-----------HDYRV-----PDPFRDQNVLLVGFGPSGVDIAMDI  137 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~-----------~~~~~-----~~~~~~~~v~VvGgG~~g~e~a~~l  137 (227)
                      ..||+|++|||+.. +..+++||.+. .+. +..           .....     .....+++|+|+|+|++|+++|..+
T Consensus       394 ~~~DaV~latGa~~-~~~~~i~g~~~-~gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~  470 (639)
T PRK12809        394 SEYDAVFIGVGTYG-MMRADLPHEDA-PGV-IQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTS  470 (639)
T ss_pred             hcCCEEEEeCCCCC-CCCCCCCCCcc-CCc-EeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHH
Confidence            56999999999943 34567787643 221 110           00111     1234689999999999999999988


Q ss_pred             Hhcc-CeEEEEeecCcc-ccc-------cCCCceE--EcCCccEEeC--Cc----eEE---c------C---------CC
Q psy810          138 EKVA-KNVFLSHHISVA-FKH-------QIGDSVV--QKPDIKRLLQ--DS----VVF---Q------D---------DT  182 (227)
Q Consensus       138 ~~~~-~~Vtli~~~~~~-~~~-------~~~~~i~--~~~~i~~~~~--~~----v~~---~------~---------g~  182 (227)
                      .+.| ++||+++|+... +..       ....+|+  ....+.++..  ++    +.+   .      +         |+
T Consensus       471 ~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~  550 (639)
T PRK12809        471 IRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGS  550 (639)
T ss_pred             HHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCc
Confidence            8887 589999985432 111       0012333  3344555531  21    211   1      1         22


Q ss_pred             --EEeccEEEEcccccccc-ccccccCCccccccc
Q psy810          183 --SHPFDSIIYCTGAYKYS-YKLTFLATFSISMAM  214 (227)
Q Consensus       183 --~i~~D~vi~atG~~~~~-~~~~~l~~~gl~~~~  214 (227)
                        .+++|.||+|+| +.|+ .  .|+++.+++++.
T Consensus       551 ~~~i~aD~Vi~AiG-~~p~~~--~~~~~~gl~~~~  582 (639)
T PRK12809        551 EFELPADVLIMAFG-FQAHAM--PWLQGSGIKLDK  582 (639)
T ss_pred             eEEEECCEEEECcC-CCCCcc--ccccccCcccCC
Confidence              589999999999 9986 4  588888888764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.85  E-value=2e-08  Score=91.72  Aligned_cols=131  Identities=13%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-----CCCCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEe
Q psy810           75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-----RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSH  148 (227)
Q Consensus        75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~  148 (227)
                      .||+|++|||+.. +..+.++|.+. .+. +....+     .......+++|+|+|+|++|++.+..+.+++ ++|++++
T Consensus       222 ~~D~Vi~AtG~~~-~~~~~i~g~~~-~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~  298 (564)
T PRK12771        222 EFDAVFVAIGAQL-GKRLPIPGEDA-AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVY  298 (564)
T ss_pred             hCCEEEEeeCCCC-CCcCCCCCCcc-CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEE
Confidence            5899999999943 23446777542 221 111111     1113445899999999999999999888887 7899998


Q ss_pred             ecCcc-ccc-------cCCCceE--EcCCccEEeCC--c---e---EE------c-------CC--CEEeccEEEEcccc
Q psy810          149 HISVA-FKH-------QIGDSVV--QKPDIKRLLQD--S---V---VF------Q-------DD--TSHPFDSIIYCTGA  195 (227)
Q Consensus       149 ~~~~~-~~~-------~~~~~i~--~~~~i~~~~~~--~---v---~~------~-------~g--~~i~~D~vi~atG~  195 (227)
                      |.+.. +..       .....++  ....+.++..+  +   +   .+      .       +|  ..+++|.||+|+| 
T Consensus       299 r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G-  377 (564)
T PRK12771        299 RRTREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIG-  377 (564)
T ss_pred             ecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcC-
Confidence            85421 110       0112333  34456666432  1   1   11      1       22  2589999999999 


Q ss_pred             ccccccccccCC-cccc
Q psy810          196 YKYSYKLTFLAT-FSIS  211 (227)
Q Consensus       196 ~~~~~~~~~l~~-~gl~  211 (227)
                      +.|+.  +++++ .+++
T Consensus       378 ~~p~~--~~~~~~~gl~  392 (564)
T PRK12771        378 QDIDS--AGLESVPGVE  392 (564)
T ss_pred             CCCch--hhhhhccCcc
Confidence            99999  89885 5665

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.71  E-value=1.5e-07  Score=84.02  Aligned_cols=76  Identities=17%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC----------CCC--CCCCCCeEEEEccCccHHHHHHHHHhc-
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY----------RVP--DPFRDQNVLLVGFGPSGVDIAMDIEKV-  140 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~----------~~~--~~~~~~~v~VvGgG~~g~e~a~~l~~~-  140 (227)
                      ..||+||+|||+.. +..+++||.+. .+ ++...++          +..  ....+++|+|||+|++|+|+|..|.+. 
T Consensus       113 ~~yDaVIlAtGa~~-~~~l~IpG~d~-~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~  189 (491)
T PLN02852        113 DLYHVVVLAYGAES-DRRLGIPGEDL-PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPT  189 (491)
T ss_pred             hhCCEEEEecCCCC-CCCCCCCCCCC-CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCc
Confidence            47999999999931 25678888653 11 1111111          111  112589999999999999999998764 


Q ss_pred             --------------------cCeEEEEeecCc
Q psy810          141 --------------------AKNVFLSHHISV  152 (227)
Q Consensus       141 --------------------~~~Vtli~~~~~  152 (227)
                                          .++|+++.|+..
T Consensus       190 ~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~  221 (491)
T PLN02852        190 DELASTDIAEHALEALRGSSVRKVYLVGRRGP  221 (491)
T ss_pred             cccccccccHHHHHHHhhCCCCEEEEEEcCCh
Confidence                                357999999763

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.66  E-value=8.3e-08  Score=64.71  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=44.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--Cc--eEEcC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--DS--VVFQD  180 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~~--v~~~~  180 (227)
                      +++|||||++|+|+|..|.+.+.+||++++++..+ ..++.               ++..+..+.++..  ++  |+++|
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~   79 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLED   79 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEET
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEec
Confidence            58999999999999999999999999999966544 22321               3344556777753  33  66666


Q ss_pred             C
Q psy810          181 D  181 (227)
Q Consensus       181 g  181 (227)
                      |
T Consensus        80 g   80 (80)
T PF00070_consen   80 G   80 (80)
T ss_dssp             S
T ss_pred             C
Confidence            5

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.61  E-value=2.3e-07  Score=87.87  Aligned_cols=62  Identities=13%  Similarity=0.123  Sum_probs=41.7

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC-------------CCCCCCCeEEEEccCccHHHHHHHH
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV-------------PDPFRDQNVLLVGFGPSGVDIAMDI  137 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~v~VvGgG~~g~e~a~~l  137 (227)
                      ...||+|+||||++ .|..+++||.+. .+ ++...++..             .....+++|+|||||++|+|+|...
T Consensus       495 ~~gyDAV~IATGA~-kpr~L~IPGeda-~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtA  569 (1028)
T PRK06567        495 DLGFDHIAFCIGAG-QPKVLDIENFEA-KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATES  569 (1028)
T ss_pred             hcCCCEEEEeCCCC-CCCCCCCCCccC-CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHH
Confidence            46799999999994 367889999764 11 222211110             0111368999999999999999833

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.34  E-value=2.5e-06  Score=71.15  Aligned_cols=83  Identities=13%  Similarity=0.243  Sum_probs=58.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc--------ccCC--------------------CceEEcCCcc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK--------HQIG--------------------DSVVQKPDIK  169 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~--------~~~~--------------------~~i~~~~~i~  169 (227)
                      +|+|||+|++|+.+|..|.+.+.+|+|+++...  .+.        ..++                    -++.. ..+.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997431  000        0011                    02222 3455


Q ss_pred             EEeCC----ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +++.+    .+.+.+|..+.+|.+|+||| ..|+.  +.++
T Consensus        81 ~v~~~~~~~~v~~~~~~~~~~d~liiAtG-~~~~~--~~i~  118 (300)
T TIGR01292        81 KVDLSDRPFKVKTGDGKEYTAKAVIIATG-ASARK--LGIP  118 (300)
T ss_pred             EEEecCCeeEEEeCCCCEEEeCEEEECCC-CCccc--CCCC
Confidence            55443    25666778899999999999 88876  5554

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.25  E-value=5e-06  Score=72.75  Aligned_cols=82  Identities=18%  Similarity=0.274  Sum_probs=57.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-cc-ccCC----------------------CceEE--cCCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-FK-HQIG----------------------DSVVQ--KPDIK  169 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~~-~~~~----------------------~~i~~--~~~i~  169 (227)
                      .++|+|||||+.|+.+|..|++.+.  +|+|+.+.... +. ..++                      .++..  ...+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            4689999999999999999998864  79999764211 10 0010                      12332  23455


Q ss_pred             EEeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .++.+  .+++.+|..+.+|.+|+||| ..|+.
T Consensus        83 ~id~~~~~v~~~~g~~~~yd~LViATG-s~~~~  114 (396)
T PRK09754         83 TLGRDTRELVLTNGESWHWDQLFIATG-AAARP  114 (396)
T ss_pred             EEECCCCEEEECCCCEEEcCEEEEccC-CCCCC
Confidence            55443  37788899999999999999 88754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.18  E-value=1.1e-05  Score=71.54  Aligned_cols=85  Identities=9%  Similarity=0.287  Sum_probs=57.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-c-----c----ccCC---------------Cce--EEcCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-F-----K----HQIG---------------DSV--VQKPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~-----~----~~~~---------------~~i--~~~~~i~  169 (227)
                      ++|+|||||+.|+.+|..|++.+.  +|+|+++++.. +     .    ...+               .++  .....+.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            479999999999999999998754  89999985431 0     0    0000               122  2344566


Q ss_pred             EEeC--CceEEcC---CCEEe--ccEEEEccccccccccccccC
Q psy810          170 RLLQ--DSVVFQD---DTSHP--FDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~--~~v~~~~---g~~i~--~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +++.  +.+++.+   |..+.  +|.+|+||| .+|+.  +-++
T Consensus        81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG-~~~~~--~~i~  121 (444)
T PRK09564         81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATG-ARPII--PPIK  121 (444)
T ss_pred             EEECCCCEEEEEECCCCCEEEecCCEEEECCC-CCCCC--CCCC
Confidence            6653  3466654   56666  999999999 88876  5443

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.08  E-value=1.4e-05  Score=69.53  Aligned_cols=82  Identities=13%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCccccc-cCC-----------------------CceEE-cCCccE
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFKH-QIG-----------------------DSVVQ-KPDIKR  170 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~~-~~~-----------------------~~i~~-~~~i~~  170 (227)
                      .++|+|+|||+.|+.++..|.+..  .+|||+.++...+-. .+.                       .++.. ...|..
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~   82 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD   82 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence            478999999999999999999874  789999996533210 010                       01222 234666


Q ss_pred             EeC--CceEEcCCCEEeccEEEEccccccccc
Q psy810          171 LLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       171 ~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ++.  ..|++.++..+++|.+++++| +.+++
T Consensus        83 ID~~~k~V~~~~~~~i~YD~LVvalG-s~~~~  113 (405)
T COG1252          83 IDRDAKKVTLADLGEISYDYLVVALG-SETNY  113 (405)
T ss_pred             EcccCCEEEeCCCccccccEEEEecC-CcCCc
Confidence            654  358898988999999999999 98887

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.04  E-value=1.9e-05  Score=69.79  Aligned_cols=83  Identities=13%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc-cccC---------------------C-CceE-EcCCccEEe
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF-KHQI---------------------G-DSVV-QKPDIKRLL  172 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~-~~~~---------------------~-~~i~-~~~~i~~~~  172 (227)
                      ..++|+|||||+.|+.+|..|.+...+|||+.+++... ...+                     . .++. +...|..++
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id   88 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDVD   88 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEEE
Confidence            35789999999999999999876567899998854321 1100                     0 1122 123466665


Q ss_pred             C--CceEE----------cCCCEEeccEEEEccccccccc
Q psy810          173 Q--DSVVF----------QDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       173 ~--~~v~~----------~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .  +.|.+          .+|.++++|.+|+||| ..++.
T Consensus        89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG-s~~~~  127 (424)
T PTZ00318         89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG-ARPNT  127 (424)
T ss_pred             cCCCEEEEecccccccccCCceEecCCEEEECCC-cccCC
Confidence            4  34666          4566899999999999 88776

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.02  E-value=1.7e-05  Score=68.41  Aligned_cols=84  Identities=11%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             eEEEEccCccHHHHHHHHHhc---cCeEEEEeecCcc-ccccCC----------------------CceEE-cCCccEEe
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISVA-FKHQIG----------------------DSVVQ-KPDIKRLL  172 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~~-~~~~~~----------------------~~i~~-~~~i~~~~  172 (227)
                      +|+|||||+.|+.+|..+.+.   ..+|+|+++.... +...++                      .+++. ...+.+++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id   80 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID   80 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence            589999999999999998643   5689999885421 111011                      02222 23455665


Q ss_pred             C--CceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .  +.|.+.+|+++.+|.+|+||| ..++.  +.++
T Consensus        81 ~~~~~V~~~~g~~~~yD~LviAtG-~~~~~--~~i~  113 (364)
T TIGR03169        81 PDRRKVLLANRPPLSYDVLSLDVG-STTPL--SGVE  113 (364)
T ss_pred             cccCEEEECCCCcccccEEEEccC-CCCCC--CCCC
Confidence            3  348888998999999999999 98887  5544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.99  E-value=3.6e-05  Score=68.27  Aligned_cols=81  Identities=14%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-ccc-cCC------------------------Cc--eEEcCCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-FKH-QIG------------------------DS--VVQKPDI  168 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~~~-~~~------------------------~~--i~~~~~i  168 (227)
                      ++|+|||||+.|+.+|..|++.  ..+|+|+.+.+.. +.. .++                        .+  +.....|
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V   81 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV   81 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence            4799999999999999999876  5689999985321 110 000                        12  2234556


Q ss_pred             cEEeCC--ceEEcCC---C--EEeccEEEEccccccccc
Q psy810          169 KRLLQD--SVVFQDD---T--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       169 ~~~~~~--~v~~~~g---~--~i~~D~vi~atG~~~~~~  200 (227)
                      .+++.+  .|.+.++   +  ++.+|.+|+||| .+|+.
T Consensus        82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtG-s~~~~  119 (438)
T PRK13512         82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPG-ASANS  119 (438)
T ss_pred             EEEECCCCEEEEEECCCCcEEeeecCEEEECCC-CCCCC
Confidence            666543  3666543   2  368999999999 88876

>PRK09897 hypothetical protein; Provisional

Probab=97.95  E-value=0.00012  Score=66.28  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCC-eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC--CCCCCCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEE-ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV--PDPFRDQ  119 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~-~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~  119 (227)
                      +.++.+++|++++..+   +.+.+.+++ +..+.+|+||+|||... |..+  ++...     +....|..  .....+.
T Consensus       124 V~v~~~~~V~~I~~~~---~g~~V~t~~gg~~i~aD~VVLAtGh~~-p~~~--~~~~~-----yi~~pw~~~~~~~i~~~  192 (534)
T PRK09897        124 VAVYESCQVTDLQITN---AGVMLATNQDLPSETFDLAVIATGHVW-PDEE--EATRT-----YFPSPWSGLMEAKVDAC  192 (534)
T ss_pred             EEEEECCEEEEEEEeC---CEEEEEECCCCeEEEcCEEEECCCCCC-CCCC--hhhcc-----ccCCCCcchhhcCCCCC
Confidence            4667788999997643   568888754 46899999999999822 2211  11111     11122221  1123468


Q ss_pred             eEEEEccCccHHHHHHHHHhc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      +|+|+|.|-++++++..|...
T Consensus       193 ~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        193 NVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             eEEEECCCHHHHHHHHHHHhc
Confidence            999999999999999888755

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.91  E-value=6.3e-05  Score=65.32  Aligned_cols=85  Identities=13%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-ccc-cCC-----------------------CceE--EcCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-FKH-QIG-----------------------DSVV--QKPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~~~-~~~-----------------------~~i~--~~~~i~  169 (227)
                      ++++|||+|+.|+.+|..|++.  ..+||++.+.+.. ++. .++                       .++.  .+..+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   82 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT   82 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence            4799999999999999999876  3479999874321 110 010                       1222  234566


Q ss_pred             EEeCCc-eEEcCCCEEeccEEEEccccccccccccccC
Q psy810          170 RLLQDS-VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~~~-v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +++.+. ....++..+.+|.+|+||| ..|..  +-++
T Consensus        83 ~id~~~~~v~~~~~~~~yd~LVlATG-~~~~~--p~i~  117 (377)
T PRK04965         83 DIDAEAQVVKSQGNQWQYDKLVLATG-ASAFV--PPIP  117 (377)
T ss_pred             EEECCCCEEEECCeEEeCCEEEECCC-CCCCC--CCCC
Confidence            665432 3334677899999999999 88876  5444

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.90  E-value=6.9e-05  Score=71.52  Aligned_cols=86  Identities=9%  Similarity=0.056  Sum_probs=59.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc----cCeEEEEeecCccc-cc-----cCC-----------------CceEE--cCCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHISVAF-KH-----QIG-----------------DSVVQ--KPDI  168 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~~~~-~~-----~~~-----------------~~i~~--~~~i  168 (227)
                      .++|+|||+|+.|+.+|..|.+.    +.+|||+.+.+... +.     .+.                 .+|..  ...+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            35899999999999999999765    35899998754321 10     000                 12332  3446


Q ss_pred             cEEeCC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          169 KRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       169 ~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..++..  .|++.+|..+++|.+|+||| ..|..  +-++
T Consensus        83 ~~Id~~~~~V~~~~G~~i~yD~LVIATG-s~p~~--p~ip  119 (847)
T PRK14989         83 ITINRQEKVIHSSAGRTVFYDKLIMATG-SYPWI--PPIK  119 (847)
T ss_pred             EEEeCCCcEEEECCCcEEECCEEEECCC-CCcCC--CCCC
Confidence            666543  36778888999999999999 88876  5444

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.85  E-value=8.1e-05  Score=70.70  Aligned_cols=83  Identities=14%  Similarity=0.220  Sum_probs=59.0

Q ss_pred             EEEEccCccHHHHHHHHHhcc---CeEEEEeecCcc-cc-----ccCC------------------CceE--EcCCccEE
Q psy810          121 VLLVGFGPSGVDIAMDIEKVA---KNVFLSHHISVA-FK-----HQIG------------------DSVV--QKPDIKRL  171 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~~~~-~~-----~~~~------------------~~i~--~~~~i~~~  171 (227)
                      |+|||+|..|+.+|..|.+.+   .+|||+.+.+.. ++     ..+.                  .+++  ....+..+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            589999999999999988764   489999885432 11     0010                  1233  34456677


Q ss_pred             eCC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          172 LQD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       172 ~~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +.+  .|++.+|.++.+|.+|+||| ..|..  +-++
T Consensus        81 d~~~k~V~~~~g~~~~yD~LVlATG-s~p~~--p~ip  114 (785)
T TIGR02374        81 DTDQKQVITDAGRTLSYDKLILATG-SYPFI--LPIP  114 (785)
T ss_pred             ECCCCEEEECCCcEeeCCEEEECCC-CCcCC--CCCC
Confidence            643  47888888999999999999 88876  5444

>KOG2755|consensus

Probab=97.82  E-value=3.8e-05  Score=62.43  Aligned_cols=88  Identities=13%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             EEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC-----CCCeEEEEcc
Q psy810           52 AEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF-----RDQNVLLVGF  126 (227)
Q Consensus        52 ~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~v~VvGg  126 (227)
                      .++..|+.  ....+.+++|..+.|++|.++||.  +|.+ ..+|.+.   +++.-.+-.+++.+     ..|.|+|+|.
T Consensus        71 ~~v~~~~s--~ehci~t~~g~~~ky~kKOG~tg~--kPkl-q~E~~n~---~Iv~irDtDsaQllq~kl~kaK~Vlilgn  142 (334)
T KOG2755|consen   71 NDVVTWDS--SEHCIHTQNGEKLKYFKLCLCTGY--KPKL-QVEGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGN  142 (334)
T ss_pred             Hhhhhhcc--ccceEEecCCceeeEEEEEEecCC--Ccce-eecCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEec
Confidence            34444444  667889999999999999999999  8886 4444322   34443333333322     3689999999


Q ss_pred             CccHHHHHHHHHhccCeEEEEee
Q psy810          127 GPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       127 G~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      |-+++|++.++.-+  .|+|...
T Consensus       143 Ggia~El~yElk~~--nv~w~ik  163 (334)
T KOG2755|consen  143 GGIAMELTYELKIL--NVTWKIK  163 (334)
T ss_pred             CchhHHHHHHhhcc--eeEEEec
Confidence            99999999999754  5777655

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.80  E-value=4.4e-05  Score=73.59  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+++|+|||+|++|+-+|..|++.|.+||++.+.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence            4899999999999999999999999999999984

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.74  E-value=0.00012  Score=62.88  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||++|+-+|..+.+.|.+|+|+++.
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~   35 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKG   35 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecC
Confidence            46999999999999999999999999999884

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.69  E-value=0.0002  Score=62.17  Aligned_cols=30  Identities=30%  Similarity=0.586  Sum_probs=25.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||||.+|+|.|..+++.|.+|.|+..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~   30 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITH   30 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEee
Confidence            389999999999999999999999999954

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.69  E-value=8.3e-05  Score=58.52  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=46.3

Q ss_pred             EEEccCccHHHHHHHHHhccCe-EEEEeecCcc---cc-----------c------cCC---------------------
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVA---FK-----------H------QIG---------------------  159 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~---~~-----------~------~~~---------------------  159 (227)
                      +|||+|++|+-+|..|.+.+.+ |+++++.+..   +.           .      .++                     
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999988 9999986321   10           0      000                     


Q ss_pred             ----------------CceEEcCCccEEeCCc----eEEcCCCEEeccEEEEccccc--cccc
Q psy810          160 ----------------DSVVQKPDIKRLLQDS----VVFQDDTSHPFDSIIYCTGAY--KYSY  200 (227)
Q Consensus       160 ----------------~~i~~~~~i~~~~~~~----v~~~~g~~i~~D~vi~atG~~--~~~~  200 (227)
                                      -++...+.|.++..++    |+++++.++.+|.||+||| .  .|+.
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG-~~~~p~~  142 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATG-HYSHPRI  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE----SSCSB--
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeee-ccCCCCc
Confidence                            0334456676665332    7788888899999999999 6  5555

...

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.68  E-value=3.3e-05  Score=60.61  Aligned_cols=85  Identities=15%  Similarity=0.330  Sum_probs=55.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCcc-c--------------------cc----cC-----CCceEE--cCC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA-F--------------------KH----QI-----GDSVVQ--KPD  167 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~-~--------------------~~----~~-----~~~i~~--~~~  167 (227)
                      +|+|||||++|+.+|..|.+.+.+|+++.+.+.. +                    ..    .+     ..+++.  ...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            5899999999999999999999999999763311 0                    00    00     012222  344


Q ss_pred             ccEEeCC-c------eE-----EcCCCEEeccEEEEccccccccccccccCC
Q psy810          168 IKRLLQD-S------VV-----FQDDTSHPFDSIIYCTGAYKYSYKLTFLAT  207 (227)
Q Consensus       168 i~~~~~~-~------v~-----~~~g~~i~~D~vi~atG~~~~~~~~~~l~~  207 (227)
                      +.++... .      +.     ..++.++.+|.+|+||| ..|+.  +.++.
T Consensus        81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG-~~~~~--~~i~g  129 (201)
T PF07992_consen   81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATG-SRPRT--PNIPG  129 (201)
T ss_dssp             EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEEST-EEEEE--ESSTT
T ss_pred             cccccccccccccCcccceeeccCCceEecCCeeeecCc-cccce--eecCC
Confidence            4555322 1      11     12445689999999999 99887  65554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.65  E-value=0.00031  Score=63.65  Aligned_cols=82  Identities=18%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC-cccc------cc--CC-----------------CceE--EcCCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS-VAFK------HQ--IG-----------------DSVV--QKPDIK  169 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~-~~~~------~~--~~-----------------~~i~--~~~~i~  169 (227)
                      ...|+|||||+.|+.+|..+++.|.+|+|+..+. ..+.      ..  .+                 .++.  ....|.
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~  291 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK  291 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence            4679999999999999999999999999996421 0010      00  00                 0222  334566


Q ss_pred             EEeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+..+    .+.+.+|..+.+|.+|+||| ..+..
T Consensus       292 ~I~~~~~~~~v~~~~g~~i~~d~lIlAtG-a~~~~  325 (515)
T TIGR03140       292 KIETEDGLIVVTLESGEVLKAKSVIVATG-ARWRK  325 (515)
T ss_pred             EEEecCCeEEEEECCCCEEEeCEEEECCC-CCcCC
Confidence            66432    25667888899999999999 87765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.62  E-value=0.00014  Score=69.92  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||||++|+.+|..|++.|.+|+++.+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            57899999999999999999999999999998843

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.57  E-value=0.00017  Score=62.07  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=32.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+++|..|.+.+.+|+++.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   51 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP   51 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            47899999999999999999999999999999854

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.56  E-value=0.00036  Score=61.88  Aligned_cols=32  Identities=25%  Similarity=0.553  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|+.|+.+|..+++.|.+|+|+++++
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            59999999999999999999999999999853

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.53  E-value=0.00049  Score=62.42  Aligned_cols=82  Identities=16%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec--Ccc-----cccc--C-------------------CCceEEcCCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI--SVA-----FKHQ--I-------------------GDSVVQKPDIK  169 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~--~~~-----~~~~--~-------------------~~~i~~~~~i~  169 (227)
                      ...|+|||||+.|+.+|..+++.|.+|+++..+  ...     +...  +                   .-.+.....+.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            347999999999999999999999999999652  000     0000  0                   01222234565


Q ss_pred             EEeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+..+    .+.+.+|..+.+|.||+||| ..++.
T Consensus       291 ~I~~~~~~~~V~~~~g~~i~a~~vViAtG-~~~r~  324 (517)
T PRK15317        291 KLEPAAGLIEVELANGAVLKAKTVILATG-ARWRN  324 (517)
T ss_pred             EEEecCCeEEEEECCCCEEEcCEEEECCC-CCcCC
Confidence            66432    25667888899999999999 87765

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.47  E-value=0.00021  Score=63.66  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~  166 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALH  166 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46899999999999999999999999999999843

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06116 glutathione reductase; Validated

Probab=97.45  E-value=0.00049  Score=61.24  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|+.+|..+++.|.+|+|+++.
T Consensus         6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4999999999999999999999999999973

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.45  E-value=0.00044  Score=61.74  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHh--------------------c-cCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEK--------------------V-AKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~--------------------~-~~~Vtli~~~~~  152 (227)
                      ..++++|||.|+.|+++|..|..                    . -.+|+++.|+++
T Consensus       196 ~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp  252 (506)
T PTZ00188        196 NFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGF  252 (506)
T ss_pred             CCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCH
Confidence            35789999999999999997532                    1 357999999853

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.45  E-value=0.00025  Score=63.26  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|||+|++|+.+|..|.+.+.+|+|+.+.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            357899999999999999999999999999998853

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.43  E-value=0.00012  Score=65.57  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCC----CEEeccEEEE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDD----TSHPFDSIIY  191 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g----~~i~~D~vi~  191 (227)
                      +.+++|+|+|+|.+|+++|..|.+.|.+|+++.+++......+         ...+...++.+..|    ....+|.||+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~---------~~~l~~~gv~~~~~~~~~~~~~~D~Vv~   84 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRAL---------AAILEALGATVRLGPGPTLPEDTDLVVT   84 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHH---------HHHHHHcCCEEEECCCccccCCCCEEEE
Confidence            4578999999999999999999999999999986432110000         00111112222111    1246999999


Q ss_pred             cccccccccccccc---CCccccc
Q psy810          192 CTGAYKYSYKLTFL---ATFSISM  212 (227)
Q Consensus       192 atG~~~~~~~~~~l---~~~gl~~  212 (227)
                      ++| ..|+.  +++   ...|+++
T Consensus        85 s~G-i~~~~--~~~~~a~~~gi~v  105 (480)
T PRK01438         85 SPG-WRPDA--PLLAAAADAGIPV  105 (480)
T ss_pred             CCC-cCCCC--HHHHHHHHCCCee
Confidence            999 99998  764   3445444

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.43  E-value=4.1e-05  Score=60.08  Aligned_cols=82  Identities=12%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             cceeEEeCceEEEEEEeeCC--CCcE---EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCc-ccceeeecCC-CCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVP--TKCL---HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADL-FRGLQMHSHD-YRVP  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~--~~~~---~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~-~~~~~~~~~~-~~~~  113 (227)
                      .++.+++++++.+++.....  ....   .....++.++.||+||+|||+  .|..|++||.+. +....+.... +...
T Consensus        71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~  148 (201)
T PF07992_consen   71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS--RPRTPNIPGEEVAYFLRGVDDAQRFLEL  148 (201)
T ss_dssp             HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE--EEEEESSTTTTTECBTTSEEHHHHHHTH
T ss_pred             ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcc--ccceeecCCCcccccccccccccccccc
Confidence            44566777888888753320  0011   224567889999999999998  788889998632 1111222222 1122


Q ss_pred             CCCCCCeEEEEc
Q psy810          114 DPFRDQNVLLVG  125 (227)
Q Consensus       114 ~~~~~~~v~VvG  125 (227)
                      .. ..++|+|||
T Consensus       149 ~~-~~~~v~VvG  159 (201)
T PF07992_consen  149 LE-SPKRVAVVG  159 (201)
T ss_dssp             SS-TTSEEEEES
T ss_pred             cc-ccccccccc
Confidence            22 245999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK10262 thioredoxin reductase; Provisional

Probab=97.43  E-value=0.00051  Score=58.26  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +.++|+|||||++|+.+|..+.+.+.+++++..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~   37 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG   37 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            467899999999999999999999988998864

>PRK06847 hypothetical protein; Provisional

Probab=97.42  E-value=0.00084  Score=57.98  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=30.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4679999999999999999999999999998753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.0011  Score=58.34  Aligned_cols=99  Identities=11%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCC----CCCCCCCCeEE
Q psy810           48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYR----VPDPFRDQNVL  122 (227)
Q Consensus        48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~----~~~~~~~~~v~  122 (227)
                      .++..++.+.+ ....+.+.+.+|.+..||-+|+|||.  .+..++.-.. .+.+. .+....|.    +.-+ .+.+|+
T Consensus       126 ~~~a~~~~~~~-n~~~~~~~~~~g~~~~ad~~Vlatgh--~~~~~~~~~~-~~~~~~~~ia~~~~~~~ld~v~-~~drVl  200 (474)
T COG4529         126 REEATSVRQDT-NAGGYLVTTADGPSEIADIIVLATGH--SAPPADPAAR-DLKGSPRLIADPYPANALDGVD-ADDRVL  200 (474)
T ss_pred             eeeeecceecc-CCceEEEecCCCCeeeeeEEEEeccC--CCCCcchhhh-ccCCCcceeccccCCccccccc-CCCceE
Confidence            35566655542 34678889999999999999999999  3333332111 12211 11111121    1112 245699


Q ss_pred             EEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810          123 LVGFGPSGVDIAMDIEKVAK--NVFLSHHIS  151 (227)
Q Consensus       123 VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~  151 (227)
                      |+|.|.+.++....|.+.|.  +||+++|++
T Consensus       201 i~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         201 IVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             EecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            99999999999999999864  699999975

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.41  E-value=0.00026  Score=67.03  Aligned_cols=34  Identities=26%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~  463 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL  463 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            5789999999999999999999999999999873

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.41  E-value=0.00084  Score=59.73  Aligned_cols=30  Identities=20%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|+.|..+|..+++.|.+|+|+++
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~   33 (446)
T TIGR01424         4 DLFVIGAGSGGVRAARLAANHGAKVAIAEE   33 (446)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence            489999999999999999999999999987

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.40  E-value=0.00082  Score=59.65  Aligned_cols=31  Identities=26%  Similarity=0.511  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||+.|+.+|..+++.+.+|+|+++.
T Consensus         5 DvvVIGgGpaGl~aA~~la~~g~~V~lie~~   35 (441)
T PRK08010          5 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQS   35 (441)
T ss_pred             CEEEECCCHhHHHHHHHHHHCCCeEEEEcCC
Confidence            5999999999999999999999999999984

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.38  E-value=0.00025  Score=62.30  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||||++|+=+|..+++.|.+|+|+++.+
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~   33 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK   33 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc
Confidence            48999999999999999999999999999863

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.37  E-value=0.00029  Score=63.02  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            35789999999999999999999999999999874

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.35  E-value=0.00033  Score=62.91  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHh--ccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEK--VAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~--~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++  .+.+|+|+++.+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            46889999999999999999986  689999999954

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.35  E-value=0.0011  Score=57.53  Aligned_cols=78  Identities=22%  Similarity=0.246  Sum_probs=57.9

Q ss_pred             EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--------cccC--------------------------------
Q psy810          121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--------KHQI--------------------------------  158 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--------~~~~--------------------------------  158 (227)
                      |+|||+|.+|..+|..|.+.  +.+|.++++.+..-        ...+                                
T Consensus         2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~   81 (370)
T TIGR01789         2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT   81 (370)
T ss_pred             EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence            79999999999999999986  88999998853110        0000                                


Q ss_pred             ------------------CCceEEcCCccEEeCCceEEcCCCEEeccEEEEcccccccc
Q psy810          159 ------------------GDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       159 ------------------~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                                        +..+..+..|.+++.+++++++|.++.+|.||.|.| ..+.
T Consensus        82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G-~~s~  139 (370)
T TIGR01789        82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRG-FKPS  139 (370)
T ss_pred             CceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCC-CCCC
Confidence                              012333455666666778888999999999999999 7764

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.34  E-value=0.0003  Score=63.00  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            46899999999999999999999999999999843

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.33  E-value=0.00043  Score=64.53  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4789999999999999999999999999999984

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.30  E-value=0.00045  Score=66.17  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|||+|++|+.+|.+|++.|.+||++.+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999999999999999999999999999873

>PRK07236 hypothetical protein; Provisional

Probab=97.29  E-value=0.0015  Score=56.93  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=31.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||||.+|+-+|..|.+.|.+|+++++.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4689999999999999999999999999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.29  E-value=0.00053  Score=66.27  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||||++|+.+|..|++.|.+|+|+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            36799999999999999999999999999998743

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG3851|consensus

Probab=97.28  E-value=0.00069  Score=56.84  Aligned_cols=93  Identities=17%  Similarity=0.267  Sum_probs=65.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-c-CeEEEEeecCccccc----------------------cCCCc-eEEcCCccEEeC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHISVAFKH----------------------QIGDS-VVQKPDIKRLLQ  173 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~~~~~~~----------------------~~~~~-i~~~~~i~~~~~  173 (227)
                      -+|+|||||.-|+-+|..+.+. + .+|-+++..++.+-+                      ..|.+ -.++..+++++.
T Consensus        40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P  119 (446)
T KOG3851|consen   40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP  119 (446)
T ss_pred             eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence            3699999999999999988876 3 367777765443210                      01111 112345777754


Q ss_pred             --CceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          174 --DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       174 --~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                        +.|.+++|++|.+|.+|+|+| .+-++  .-++.+--.++.
T Consensus       120 ~~N~v~t~gg~eIsYdylviA~G-iql~y--~~IkGl~Eal~t  159 (446)
T KOG3851|consen  120 DKNTVVTRGGEEISYDYLVIAMG-IQLDY--GKIKGLVEALDT  159 (446)
T ss_pred             CcCeEEccCCcEEeeeeEeeeee-ceecc--chhcChHhhccC
Confidence              569999999999999999999 99998  666644444443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.26  E-value=0.00041  Score=62.10  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            47899999999999999999999999999998843

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06370 mercuric reductase; Validated

Probab=97.23  E-value=0.0011  Score=59.19  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus         7 DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   37 (463)
T PRK06370          7 DAIVIGAGQAGPPLAARAAGLGMKVALIERG   37 (463)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5999999999999999999999999999874

>KOG1399|consensus

Probab=97.22  E-value=0.002  Score=57.14  Aligned_cols=34  Identities=21%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|++|+-.|..|.+.|.+|++++|.+
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~   39 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD   39 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence            5789999999999999999999999999999964

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.22  E-value=0.00064  Score=66.20  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~  462 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL  462 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            3689999999999999999999999999999984

>KOG1800|consensus

Probab=97.21  E-value=0.00082  Score=57.54  Aligned_cols=77  Identities=17%  Similarity=0.200  Sum_probs=53.5

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC-------CC----CCCCCCCeEEEEccCccHHHHHHHHHhc-
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY-------RV----PDPFRDQNVLLVGFGPSGVDIAMDIEKV-  140 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~-------~~----~~~~~~~~v~VvGgG~~g~e~a~~l~~~-  140 (227)
                      .-.||+||||.|+.. ++..++||.+. .+ ++....+       ..    ..++.+++|+|||.|+.++++|..|... 
T Consensus       106 ~~~ydavvLaYGa~~-dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~  182 (468)
T KOG1800|consen  106 TDNYDAVVLAYGADG-DRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQ  182 (468)
T ss_pred             hhcccEEEEEecCCC-CcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCc
Confidence            457999999999954 56679999752 11 1111111       11    2345688999999999999999988752 


Q ss_pred             ---------------------cCeEEEEeecCc
Q psy810          141 ---------------------AKNVFLSHHISV  152 (227)
Q Consensus       141 ---------------------~~~Vtli~~~~~  152 (227)
                                           -++|+|+.|+++
T Consensus       183 ~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp  215 (468)
T KOG1800|consen  183 GPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGP  215 (468)
T ss_pred             cccccccCCcHHHHhhhhcCCcceEEEEeccCc
Confidence                                 146899998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.20  E-value=0.0017  Score=57.93  Aligned_cols=31  Identities=19%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus         4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~   34 (450)
T TIGR01421         4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK   34 (450)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence            4999999999999999999999999999973

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06753 hypothetical protein; Provisional

Probab=97.20  E-value=0.0017  Score=56.02  Aligned_cols=32  Identities=16%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||||.+|+=+|..|++.|.+|+++++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            69999999999999999999999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.19  E-value=0.0018  Score=57.81  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|++|+.+|..+++.|.+|+|+++.
T Consensus         7 DvvVIGaGpaG~~aA~~la~~G~~v~liE~~   37 (461)
T PRK05249          7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERY   37 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            5999999999999999999999999999984

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.0024  Score=56.78  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCe-EEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|.+.+.. +.++++.+
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~   42 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD   42 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence            4699999999999999999999887 99998863

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.14  E-value=0.00095  Score=60.68  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|+|||+|.+|+-.|..+.+.|-+++++++.+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence            789999999999999999999999999999864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.14  E-value=0.00061  Score=61.31  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|.+|+.+|..|++.+.+|+++.+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            46899999999999999999999999999998843

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.05  E-value=0.0037  Score=56.00  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|..|..+|..+++.|.+|.++++.
T Consensus         8 dviVIGaG~aG~~aA~~l~~~g~~v~lie~~   38 (468)
T PRK14694          8 HIAVIGSGGSAMAAALKATERGARVTLIERG   38 (468)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence            5999999999999999999999999999974

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.04  E-value=0.00079  Score=62.62  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            47899999999999999999999999999999854

>KOG0399|consensus

Probab=97.03  E-value=0.002  Score=62.07  Aligned_cols=73  Identities=19%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             eEEEcCEEEEccCCCCCCCCCCCCCCCc----ccceeeecCC--CC----C--CCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           72 TLHYNLLQSLPSSHNSVPNIPSYEGADL----FRGLQMHSHD--YR----V--PDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        72 ~~~~~~~vilAtG~~~~p~~p~~~g~~~----~~~~~~~~~~--~~----~--~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..-+.|+||+|+|+. .|+=.++||-+.    |....+|...  ..    +  ....++|+|+|||||.+|-++...-.+
T Consensus      1867 l~~~~daiv~a~gst-~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1867 LKKENDAIVLATGST-TPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVR 1945 (2142)
T ss_pred             HhhccCeEEEEeCCC-CCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchh
Confidence            456789999999994 456567887653    2111122110  00    1  123368999999999999998776666


Q ss_pred             cc-CeEE
Q psy810          140 VA-KNVF  145 (227)
Q Consensus       140 ~~-~~Vt  145 (227)
                      .| +.|-
T Consensus      1946 hg~~sv~ 1952 (2142)
T KOG0399|consen 1946 HGCKSVG 1952 (2142)
T ss_pred             hccceec
Confidence            54 3443

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.03  E-value=0.0012  Score=58.87  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---CceEEc-----CCccEEeCCceEEcCCCE---
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---DSVVQK-----PDIKRLLQDSVVFQDDTS---  183 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---~~i~~~-----~~i~~~~~~~v~~~~g~~---  183 (227)
                      ...+++|+|||+|+.|+..|..|++.|..||++.+.+ ..-..+.   ..+...     ..+..+...++.+..+..   
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~-~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~  198 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA-LDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR  198 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC-CCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC
Confidence            3457999999999999999999999999999998843 2211110   011111     123333334444432211   


Q ss_pred             --------EeccEEEEccccccccc
Q psy810          184 --------HPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       184 --------i~~D~vi~atG~~~~~~  200 (227)
                              -.+|.|++|+|+..|+.
T Consensus       199 ~it~~~L~~e~Dav~l~~G~~~~~~  223 (457)
T COG0493         199 DITLEELLKEYDAVFLATGAGKPRP  223 (457)
T ss_pred             cCCHHHHHHhhCEEEEeccccCCCC
Confidence                    25799999999556654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.03  E-value=0.0024  Score=57.21  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus         6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   36 (471)
T PRK06467          6 QVVVLGAGPAGYSAAFRAADLGLETVCVERY   36 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5999999999999999999999999999974

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.03  E-value=0.0019  Score=57.81  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++++|||+|+.|+.+|..+++.+.+|+|+.+.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~   33 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD   33 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            46999999999999999999999999999974

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.00  E-value=0.0029  Score=56.60  Aligned_cols=30  Identities=23%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|+.|...|..+++.|.+|+|+++
T Consensus         5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~   34 (466)
T PRK06115          5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            599999999999999999999999999996

>PRK07588 hypothetical protein; Provisional

Probab=96.97  E-value=0.0037  Score=54.47  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~   33 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP   33 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence            69999999999999999999999999998753

>PRK05868 hypothetical protein; Validated

Probab=96.95  E-value=0.0042  Score=53.94  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence            479999999999999999999999999999853

>PLN02546 glutathione reductase

Probab=96.94  E-value=0.0037  Score=57.23  Aligned_cols=30  Identities=13%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|..|...|..+++.|.+|.|+++
T Consensus        81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         81 DLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            499999999999999999999999999995

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.93  E-value=0.0053  Score=53.46  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||||.+|+=+|..|.+.|.+|+++++.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence            4679999999999999999999999999999863

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.92  E-value=0.00064  Score=63.38  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+++.+.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            46899999999999999999999999999998843

>PTZ00058 glutathione reductase; Provisional

Probab=96.91  E-value=0.0061  Score=55.84  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|..|.-.|..+++.|.+|.|+++.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999999974

>KOG1336|consensus

Probab=96.87  E-value=0.0071  Score=53.25  Aligned_cols=90  Identities=13%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCcccc---ccCC----------------------CceEEcCCc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFK---HQIG----------------------DSVVQKPDI  168 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~---~~~~----------------------~~i~~~~~i  168 (227)
                      +..++++|+|+|..|.=++..+.+.+  -+++++.+. ..+.   ..++                      -.+..++.+
T Consensus        72 ~~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~-~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v  150 (478)
T KOG1336|consen   72 YAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE-YLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSV  150 (478)
T ss_pred             cccceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc-ccCcccchhcccceeeccccccccChhhHhhcCceEEEccee
Confidence            34689999999999877777887764  367887763 2211   0011                      133345666


Q ss_pred             cEEe--CCceEEcCCCEEeccEEEEccccccccccccccCCcccc
Q psy810          169 KRLL--QDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSIS  211 (227)
Q Consensus       169 ~~~~--~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~  211 (227)
                      .+++  ..++.+.+|..+++|.+++||| ..+.    +++..|.+
T Consensus       151 ~~~D~~~K~l~~~~Ge~~kys~LilATG-s~~~----~l~~pG~~  190 (478)
T KOG1336|consen  151 VKADLASKTLVLGNGETLKYSKLIIATG-SSAK----TLDIPGVE  190 (478)
T ss_pred             EEeeccccEEEeCCCceeecceEEEeec-Cccc----cCCCCCcc
Confidence            6664  3569999999999999999999 7443    44545555

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.87  E-value=0.0064  Score=54.28  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~   32 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA   32 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            6899999999999999999999999999984

>PRK09126 hypothetical protein; Provisional

Probab=96.86  E-value=0.0055  Score=53.29  Aligned_cols=32  Identities=25%  Similarity=0.478  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||.+|+-+|..|++.|.+|+++++..
T Consensus         5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            59999999999999999999999999999854

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.85  E-value=0.0048  Score=56.53  Aligned_cols=31  Identities=13%  Similarity=0.418  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||+.|+.+|..+++.+.+|+|+.+.
T Consensus         6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~~   36 (555)
T TIGR03143         6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD   36 (555)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence            5999999999999999999999999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02463 lycopene beta cyclase

Probab=96.85  E-value=0.0052  Score=54.76  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -.|+|||||.+|.-+|..|++.|.+|.++++.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            369999999999999999999999999998743

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.83  E-value=0.0042  Score=55.33  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=49.7

Q ss_pred             EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC------------C--CCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           73 LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD------------Y--RVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~------------~--~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      .-.||+|++|||+. .|+..++||.+. .+ +....+            +  .......+|+|+|||+|.+++|++....
T Consensus       206 ~~e~Dav~l~~G~~-~~~~l~i~g~d~-~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~  282 (457)
T COG0493         206 LKEYDAVFLATGAG-KPRPLDIPGEDA-KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTAL  282 (457)
T ss_pred             HHhhCEEEEecccc-CCCCCCCCCcCC-Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHh
Confidence            34569999999994 466668888652 11 011111            1  0112224599999999999999998888


Q ss_pred             hccC-eEEEEee
Q psy810          139 KVAK-NVFLSHH  149 (227)
Q Consensus       139 ~~~~-~Vtli~~  149 (227)
                      +.|. +|+.+.+
T Consensus       283 r~Ga~~v~~~~~  294 (457)
T COG0493         283 RLGAKSVTCFYR  294 (457)
T ss_pred             hcCCeEEEEecc
Confidence            8865 7888864

>PLN02507 glutathione reductase

Probab=96.81  E-value=0.007  Score=54.72  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|+.|.-.|..+.+.|.+|.|+++
T Consensus        27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         27 DLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            499999999999999999999999999995

>PRK14727 putative mercuric reductase; Provisional

Probab=96.80  E-value=0.0071  Score=54.33  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.++|||+|..|..+|..+++.|.+|+++++.
T Consensus        17 ~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~   48 (479)
T PRK14727         17 LHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA   48 (479)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            36999999999999999999999999999984

>KOG0399|consensus

Probab=96.78  E-value=0.0011  Score=63.80  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...|++|+|||.|++|+-.|.-|.+.|..|++++|.+
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence            3468999999999999999999999999999999954

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.77  E-value=0.0026  Score=57.01  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||..|+|.|...+++|.++.|++...
T Consensus         6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             ceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            59999999999999999999999999987643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.76  E-value=0.0057  Score=54.83  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|..+|..+++.|.+|.|+++.
T Consensus         6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            5999999999999999999999999999974

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.76  E-value=0.0075  Score=52.54  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+=+|..|++.|.+|+|+++.
T Consensus         7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~   38 (392)
T PRK08773          7 RDAVIVGGGVVGAACALALADAGLSVALVEGR   38 (392)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence            46999999999999999999999999999985

>PRK13984 putative oxidoreductase; Provisional

Probab=96.75  E-value=0.0019  Score=59.65  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=31.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|.+|+.+|..|.+.|.+|+++.+.+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~  316 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS  316 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46889999999999999999999999999998743

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.70  E-value=0.0018  Score=45.64  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.++++|+|||||..|..-+..|.+.|.+||++.+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            346899999999999999999999999999999884

>TIGR02053 MerA mercuric reductase

Probab=96.70  E-value=0.0074  Score=53.89  Aligned_cols=31  Identities=13%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|..+|..+++.|.+|+|+++.
T Consensus         2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~   32 (463)
T TIGR02053         2 DLVIIGSGAAAFAAAIKAAELGASVAMVERG   32 (463)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4899999999999999999999999999973

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.66  E-value=0.009  Score=52.48  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      +|+|||||..|+=+|..|.+.| .+|+++++.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~   34 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP   34 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            6999999999999999999987 4999999863

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.65  E-value=0.0093  Score=52.00  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~  151 (227)
                      .|+|||||.+|+=+|..|++.|  .+|+++++.+
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            4899999999999999999985  8999999853

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.62  E-value=0.0089  Score=52.14  Aligned_cols=32  Identities=28%  Similarity=0.562  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+=+|..|.+.|.+|+|+++.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            46999999999999999999999999999996

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.011  Score=50.00  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCe-EEEEeecCcc--c-----cccCCC---------------------ceEE-cCCcc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVA--F-----KHQIGD---------------------SVVQ-KPDIK  169 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~--~-----~~~~~~---------------------~i~~-~~~i~  169 (227)
                      .|+|||+|+.|+-.|.++.+.+.+ +.++......  +     ...+|.                     .++. ...+.
T Consensus         5 DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~   84 (305)
T COG0492           5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVEDEVE   84 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEEEEE
Confidence            599999999999999999999877 5555442111  0     000110                     1111 13345


Q ss_pred             EEeCCc----eEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQDS----VVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~~----v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      +++..+    |.+.+|. +.++.||+||| ..+..
T Consensus        85 ~v~~~~~~F~v~t~~~~-~~ak~vIiAtG-~~~~~  117 (305)
T COG0492          85 KVELEGGPFKVKTDKGT-YEAKAVIIATG-AGARK  117 (305)
T ss_pred             EEeecCceEEEEECCCe-EEEeEEEECcC-CcccC
Confidence            554432    5556666 99999999999 77665

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.61  E-value=0.0031  Score=40.89  Aligned_cols=29  Identities=24%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             EEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          123 LVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       123 VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |||+|.+|+-+|..|++.+.+|+++++.+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999954

...

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.60  E-value=0.011  Score=51.45  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||..|.=+|..|.+.|.+|+++++.
T Consensus         5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~   35 (384)
T PRK08849          5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGG   35 (384)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            6999999999999999999999999999975

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.57  E-value=0.0046  Score=47.63  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+.+++++|+|+|.+ |.-+|..|.+.+.+|+++.|.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            567899999999986 777999999998899999984

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.57  E-value=0.012  Score=51.62  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+=+|..|.+.|.+|+++++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            46999999999999999999999999999984

>PRK06834 hypothetical protein; Provisional

Probab=96.57  E-value=0.013  Score=52.82  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -.|+|||+|.+|+=+|..|.+.|.+|+++++.+
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~   36 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP   36 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            469999999999999999999999999999853

>KOG2495|consensus

Probab=96.56  E-value=0.0076  Score=52.51  Aligned_cols=35  Identities=11%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..++|+|+|.|+.|+-++..|-.---+|++++.+.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn   88 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN   88 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence            46899999999999999999988888999998864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.55  E-value=0.008  Score=53.66  Aligned_cols=31  Identities=23%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|+..|..+++.|.+|.|+++.
T Consensus         6 DvvVIGaGpaG~~aA~~aa~~G~~V~liE~~   36 (462)
T PRK06416          6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE   36 (462)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            5999999999999999999999999999874

>PRK07045 putative monooxygenase; Reviewed

Probab=96.54  E-value=0.013  Score=50.94  Aligned_cols=33  Identities=24%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAA   38 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence            369999999999999999999999999998754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.50  E-value=0.0076  Score=53.74  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|..|..+|..+++.|.+|.|+++
T Consensus         3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~   32 (461)
T TIGR01350         3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK   32 (461)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            489999999999999999999999999997

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.50  E-value=0.013  Score=51.02  Aligned_cols=78  Identities=18%  Similarity=0.359  Sum_probs=55.4

Q ss_pred             EEEEccCccHHHHHHHH--HhccCeEEEEeecCcc-ccc---------cCC-----------------------------
Q psy810          121 VLLVGFGPSGVDIAMDI--EKVAKNVFLSHHISVA-FKH---------QIG-----------------------------  159 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l--~~~~~~Vtli~~~~~~-~~~---------~~~-----------------------------  159 (227)
                      |+|||+|.+|.-+|..|  .+.+.+|.++++.... +..         .+.                             
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            79999999999999999  7778999999874322 000         000                             


Q ss_pred             -------------------CceEEcCCccEEeCCc----eEEcCCCEEeccEEEEcccccccc
Q psy810          160 -------------------DSVVQKPDIKRLLQDS----VVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       160 -------------------~~i~~~~~i~~~~~~~----v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                                         ..+.....|.++..++    +++.+|.++.++.||-|.| ..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g-~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARG-PSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCC-cccc
Confidence                               0122344566665433    5788999999999999999 7654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG2311|consensus

Probab=96.50  E-value=0.0092  Score=52.79  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||..|+|.|...++.|++-+|++..-
T Consensus        30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             cEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            59999999999999999999999988887753

>PRK06184 hypothetical protein; Provisional

Probab=96.48  E-value=0.014  Score=52.80  Aligned_cols=33  Identities=27%  Similarity=0.581  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999999853

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.48  E-value=0.0025  Score=58.45  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|||+|++|+-+|..|.+.|.+|+++.+.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            35889999999999999999999999999999874

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.46  E-value=0.013  Score=52.54  Aligned_cols=31  Identities=19%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|...|..+++.|.+|+|+++.
T Consensus         6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            5999999999999999999999999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=96.46  E-value=0.02  Score=52.41  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|+.|..+|..+++.|.+|.|+++.
T Consensus        99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            36999999999999999999999999999974

>KOG2755|consensus

Probab=96.38  E-value=0.0042  Score=50.83  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=54.2

Q ss_pred             EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccccc----------------------cCCCceE-EcCCccEEeC--
Q psy810          121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAFKH----------------------QIGDSVV-QKPDIKRLLQ--  173 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~~~----------------------~~~~~i~-~~~~i~~~~~--  173 (227)
                      .+|||||-.|+-+|.-|+..  ..+|.|++.++ .+..                      ++..++. ...++..+..  
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass-~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~e   80 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS-FVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWDSSE   80 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH-HHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhcccc
Confidence            68999999999999999886  56888887743 1110                      0111111 1122444433  


Q ss_pred             CceEEcCCCEEeccEEEEccccccccc
Q psy810          174 DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       174 ~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      +.+++++|..+.++.+.+|+| ++|..
T Consensus        81 hci~t~~g~~~ky~kKOG~tg-~kPkl  106 (334)
T KOG2755|consen   81 HCIHTQNGEKLKYFKLCLCTG-YKPKL  106 (334)
T ss_pred             ceEEecCCceeeEEEEEEecC-CCcce
Confidence            348899999999999999999 99876

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.35  E-value=0.022  Score=51.35  Aligned_cols=30  Identities=20%  Similarity=0.426  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .++|||+|..|...|..+++.|.+|.++.+
T Consensus         4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~   33 (484)
T TIGR01438         4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF   33 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            489999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.31  E-value=0.019  Score=51.89  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|+.|...|..+.+.|.+|.|+.+
T Consensus         7 DviVIG~GpaG~~AA~~aa~~G~~V~lie~   36 (499)
T PTZ00052          7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDY   36 (499)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            499999999999999999999999999995

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.30  E-value=0.022  Score=43.20  Aligned_cols=29  Identities=21%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             EEEccCccHHHHHHHHHhcc-----CeEEEEeec
Q psy810          122 LLVGFGPSGVDIAMDIEKVA-----KNVFLSHHI  150 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~-----~~Vtli~~~  150 (227)
                      +|||+|++|+-++..|.+..     .+|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~   34 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS   34 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            59999999999999998873     479999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.26  E-value=0.0062  Score=46.38  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +..+++|+|||||..|..-+..|...+.+|+++..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            45689999999999999999999999999999954

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.23  E-value=0.028  Score=50.67  Aligned_cols=30  Identities=17%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             eEEEEccCccHHHHHHHHHhc-cCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV-AKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~  149 (227)
                      .|+|||+|..|...|..+++. |.+|.|+++
T Consensus         5 DviVIG~G~~G~~aA~~aa~~~g~~V~lie~   35 (486)
T TIGR01423         5 DLVVIGAGSGGLEAGWNAATLYKKRVAVIDV   35 (486)
T ss_pred             CEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence            499999999999999999997 899999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=96.22  E-value=0.011  Score=51.09  Aligned_cols=47  Identities=15%  Similarity=0.034  Sum_probs=39.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPN   90 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~   90 (227)
                      .++.++++++|.++++.+   ..|.+++.+++.+.||++|+|||..+.|.
T Consensus       124 ~gV~i~~~~~v~~v~~~~---~~f~l~t~~g~~i~~d~lilAtGG~S~P~  170 (408)
T COG2081         124 LGVTIRTRSRVSSVEKDD---SGFRLDTSSGETVKCDSLILATGGKSWPK  170 (408)
T ss_pred             cCcEEEecceEEeEEecC---ceEEEEcCCCCEEEccEEEEecCCcCCCC
Confidence            467999999999998744   68999999998899999999999744553

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.22  E-value=0.018  Score=56.35  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=30.3

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...|+|||+|++|+..|..+.+.+.+|+|+...
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~  195 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ  195 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            457999999999999999999999999999874

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.20  E-value=0.03  Score=51.99  Aligned_cols=82  Identities=11%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc---cCeEEEEeecCc------cccccCC------------------Cce--EEcCCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISV------AFKHQIG------------------DSV--VQKPDI  168 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~------~~~~~~~------------------~~i--~~~~~i  168 (227)
                      .++++|||.|..|.-+...+...   ..+||++...+.      .++..++                  .+|  .....+
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            36799999999999999988885   346888865321      1122121                  133  334567


Q ss_pred             cEEeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          169 KRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       169 ~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ..++.+  .|+.+.|..+.+|.+|+||| +.|..
T Consensus        83 ~~idr~~k~V~t~~g~~~~YDkLilATG-S~pfi  115 (793)
T COG1251          83 IQIDRANKVVTTDAGRTVSYDKLIIATG-SYPFI  115 (793)
T ss_pred             EEeccCcceEEccCCcEeecceeEEecC-ccccc
Confidence            677654  37777888999999999999 55544

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.11  E-value=0.0068  Score=53.43  Aligned_cols=33  Identities=24%  Similarity=0.264  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||||.+|+++|..|++.|.+|+|+++++
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            579999999999999999999999999998643

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.08  E-value=0.0031  Score=47.28  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|+|+|.+|.-+|..|.+.+.+|+++.|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999999955

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.05  E-value=0.0086  Score=47.57  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.+++|+|||||.+|...+..|...|.+|+++.+
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            35689999999999999999999999999999976

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.05  E-value=0.0085  Score=47.71  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +.+++|+|||||.+|..-+..|.+.|.+||++..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp   40 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE   40 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence            5689999999999999999999999999999977

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.03  E-value=0.014  Score=48.82  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.|++++|||.|. .|.-+|..|.+.+..||+++++.
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t  192 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS  192 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence            56799999999988 99999999999999999999853

>PLN02697 lycopene epsilon cyclase

Probab=96.02  E-value=0.028  Score=51.18  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-+|..+++.|.+|.++.+.
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            36999999999999999999999999999764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=95.98  E-value=0.033  Score=51.26  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+++|..+++.+.+|.++.+.
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~   32 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN   32 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence            3899999999999999999999999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07846 mycothione reductase; Reviewed

Probab=95.89  E-value=0.048  Score=48.68  Aligned_cols=29  Identities=10%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++|||+|..|..+|..  ..|.+|.|+++.
T Consensus         3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~   31 (451)
T PRK07846          3 DLIIIGTGSGNSILDER--FADKRIAIVEKG   31 (451)
T ss_pred             CEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence            38999999988876654  459999999974

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=95.87  E-value=0.0091  Score=52.75  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|+|||||.+|+++|..|++.|.+|+|+++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            699999999999999999999999999986443

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.79  E-value=0.014  Score=52.36  Aligned_cols=36  Identities=17%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHH-hccCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIE-KVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~-~~~~~Vtli~~~~~  152 (227)
                      .+++|+|||+|++|+.+|..|. +.+.+|+|+++.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            4689999999999999999765 56899999999653

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=95.71  E-value=0.015  Score=51.28  Aligned_cols=49  Identities=18%  Similarity=0.071  Sum_probs=31.3

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPN   90 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~   90 (227)
                      +.+++++++++|.+|.+.+.  ..|.|.++++..+.+|+||||||..+.|.
T Consensus       121 ~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vILAtGG~S~p~  169 (409)
T PF03486_consen  121 RLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVILATGGKSYPK  169 (409)
T ss_dssp             HHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEEE----SSSGG
T ss_pred             HcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEEEecCCCCccc
Confidence            34679999999999986553  45999996667899999999999854443

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>KOG0404|consensus

Probab=95.69  E-value=0.057  Score=43.41  Aligned_cols=85  Identities=18%  Similarity=0.249  Sum_probs=53.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------------cCCCceE------------------
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------------QIGDSVV------------------  163 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------------~~~~~i~------------------  163 (227)
                      .+|+|||.|+.|.-.|.++++..-+-.|++.-  ..+.                 .+|+.|.                  
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~--~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~   86 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGM--MANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE   86 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeee--eccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence            57999999999999999998876566666541  1111                 1232221                  


Q ss_pred             E-cCCccEEeCCc---eEEcCCCEEeccEEEEccccccccccccccCCc
Q psy810          164 Q-KPDIKRLLQDS---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATF  208 (227)
Q Consensus       164 ~-~~~i~~~~~~~---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~  208 (227)
                      + ...|.+++-.+   ..++|...+.+|.||+||| .....  -+|...
T Consensus        87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atG-AsAkR--l~~pg~  132 (322)
T KOG0404|consen   87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATG-ASAKR--LHLPGE  132 (322)
T ss_pred             eeeeehhhccccCCCeEEEecCCceeeeeEEEecc-cceee--eecCCC
Confidence            1 12233333222   4455777889999999999 55554  455544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.64  E-value=0.023  Score=48.07  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=31.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .+|+|+|+|.+|.=+|..|.+.|.+|+++.|+...
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~   37 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQR   37 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHH
Confidence            46999999999999999999999999999995433

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=95.50  E-value=0.019  Score=48.60  Aligned_cols=32  Identities=25%  Similarity=0.520  Sum_probs=28.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||.+|+=+|..|++.|.+|+++++++
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~   34 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP   34 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence            58999999999999999999999999999964

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.48  E-value=0.069  Score=47.68  Aligned_cols=31  Identities=26%  Similarity=0.438  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++|||+|..|.-.|..+++.|.+|.+++++
T Consensus         6 DvvVIG~GpaG~~aA~raa~~G~kvalvE~~   36 (454)
T COG1249           6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKG   36 (454)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeec
Confidence            4899999999999999999999889999985

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.47  E-value=0.069  Score=47.37  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhc---cCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~  150 (227)
                      .+|+|||+|++|+.+|.+|.+.   ...|+++.++
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~   36 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR   36 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc
Confidence            4799999999999999999986   2239999875

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.44  E-value=0.022  Score=50.97  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..++|+|||+|++|+-+|..|.+.|.+|+++++++
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            35789999999999999999999999999999853

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.44  E-value=0.04  Score=42.04  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.-++..|.+.+..||+.+...
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T   70 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT   70 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence            56799999999885 89999999999999999998843

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.43  E-value=0.033  Score=46.59  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|+|.|. .|-=+|..|.+.+..||+++|+.
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t  193 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT  193 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            356799999999998 88889999998888999999843

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.34  E-value=0.022  Score=49.95  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            379999999999999999999999999999853

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.34  E-value=0.013  Score=52.11  Aligned_cols=79  Identities=20%  Similarity=0.335  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc-cccccCCCceEEcCCccEEeCCceEEcCC---CEEeccEEEE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV-AFKHQIGDSVVQKPDIKRLLQDSVVFQDD---TSHPFDSIIY  191 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~-~~~~~~~~~i~~~~~i~~~~~~~v~~~~g---~~i~~D~vi~  191 (227)
                      +.+++++|+|+|.+|..+|..|++.|.+|+++.+... .+.... ..+. ...+.      +...+.   ..-.+|.||.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~~l~-~~~~~------~~~~~~~~~~~~~~d~vv~   74 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEAL-EELG-ELGIE------LVLGEYPEEFLEGVDLVVV   74 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHHH-hcCCE------EEeCCcchhHhhcCCEEEE
Confidence            3578999999999999999999999999999988431 111000 0000 00111      111111   1125899999


Q ss_pred             cccccccccccccc
Q psy810          192 CTGAYKYSYKLTFL  205 (227)
Q Consensus       192 atG~~~~~~~~~~l  205 (227)
                      ++| ..++.  +.+
T Consensus        75 ~~g-~~~~~--~~~   85 (450)
T PRK14106         75 SPG-VPLDS--PPV   85 (450)
T ss_pred             CCC-CCCCC--HHH
Confidence            999 88877  654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.31  E-value=0.037  Score=46.52  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+|+|||.| .+|.-+|..|.+.|..||+++++.
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t  193 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS  193 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence            35679999999996 999999999999999999998843

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.28  E-value=0.042  Score=45.89  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.|++|+|||.|.+ |.-+|..|.+.+..||+.+++
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~  191 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK  191 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC
Confidence            567999999999998 999999999999999998774

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.25  E-value=0.02  Score=43.52  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|+|+|+.|.-+|..|+..+.+|+|+.|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999999954

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.22  E-value=0.03  Score=45.05  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=31.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ..+++|+|||||..|..=+..|.+.+.+||++..
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap   56 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK   56 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            3578999999999999999999999999999977

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.20  E-value=0.025  Score=47.91  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|.+|++.|.+|+|+++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=95.17  E-value=0.025  Score=50.02  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~  151 (227)
                      ++|+|||||.+|+-+|..|.+.|  .+|+|++.++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~   35 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD   35 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            47999999999999999999977  7899999853

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.16  E-value=0.037  Score=46.43  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +|+|+|+|..|.-+|..|.+.|.+|+++.| ...
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~   34 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKR   34 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHH
Confidence            589999999999999999999999999998 543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.16  E-value=0.02  Score=46.22  Aligned_cols=72  Identities=19%  Similarity=0.380  Sum_probs=46.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCc---eEEcCCCEEeccEEEEccc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDS---VVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~---v~~~~g~~i~~D~vi~atG  194 (227)
                      ++++|+|+|..|..+|..|.+.|.+|+++.+.+..........+    ....+.+++   =.+.+-.-..+|+++.+||
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            46899999999999999999999999999985544332122111    111111111   1122223347999999999

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.14  E-value=0.076  Score=45.00  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|+|+|.+|.-+|..|++.|.+|+++.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            579999999999999999999999999999953

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.13  E-value=0.037  Score=46.90  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC-EEeccEEEEccc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT-SHPFDSIIYCTG  194 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~-~i~~D~vi~atG  194 (227)
                      ++.|+|+|.+|.=++..|.+.+.+|+++.|.+ .........+.+...-...........+.. ..++|.||+++=
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~-~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR-RLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH-HHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            68999999999999999999998999999944 322212223333221111110112222222 237999999887

>KOG0029|consensus

Probab=95.11  E-value=0.031  Score=50.47  Aligned_cols=35  Identities=17%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..++|+|||+|.+|+-+|..|.+.|-+|++++.++
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            35689999999999999999999999999998854

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=95.04  E-value=0.051  Score=41.15  Aligned_cols=35  Identities=9%  Similarity=-0.000  Sum_probs=30.2

Q ss_pred             CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      +.+|+.|+..+   +.|.+.+.++..+.+|+||||||.
T Consensus       121 ~~~V~~i~~~~---~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  121 RAEVVDIRRDD---DGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             eeEEEEEEEcC---CcEEEEECCCCEEEeCEEEECCCC
Confidence            57899888755   668888888899999999999996

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.02  E-value=0.029  Score=48.38  Aligned_cols=31  Identities=16%  Similarity=0.352  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|.+|++.|.+|+|++++
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~   35 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRF   35 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5999999999999999999999999999875

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=95.01  E-value=0.029  Score=50.01  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +||+|+|+|..|+-+|.+|+..|-+|||+++++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~   33 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD   33 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence            589999999999999999999999999999954

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=94.99  E-value=0.03  Score=49.71  Aligned_cols=34  Identities=24%  Similarity=0.514  Sum_probs=31.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++++|||||.+|++.|..|+..|-+|+|+++.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep  157 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP  157 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4789999999999999999999999999999854

>PRK07233 hypothetical protein; Provisional

Probab=94.98  E-value=0.029  Score=49.23  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-.|..|.+.|.+|+|+++.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            58999999999999999999999999999854

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.96  E-value=0.067  Score=39.91  Aligned_cols=68  Identities=12%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             CCCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEc
Q psy810          114 DPFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYC  192 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~a  192 (227)
                      .++.||+++|+|.+.. |--+|..|.+.+..|++.+++...+..                         ..-.+|.|+.|
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~-------------------------~v~~ADIVvsA   78 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS-------------------------KVHDADVVVVG   78 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH-------------------------HHhhCCEEEEe
Confidence            3667999999997765 456888888889999999873321100                         11358888888


Q ss_pred             cccccccccccccCC
Q psy810          193 TGAYKYSYKLTFLAT  207 (227)
Q Consensus       193 tG~~~~~~~~~~l~~  207 (227)
                      +| ..+-.+..|++.
T Consensus        79 tg-~~~~i~~~~ikp   92 (140)
T cd05212          79 SP-KPEKVPTEWIKP   92 (140)
T ss_pred             cC-CCCccCHHHcCC
Confidence            88 554334456653

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=94.95  E-value=0.033  Score=46.02  Aligned_cols=32  Identities=31%  Similarity=0.513  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS   33 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999999863

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06996 hypothetical protein; Provisional

Probab=94.94  E-value=0.12  Score=45.17  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=28.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc----CeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA----KNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~----~~Vtli~~~  150 (227)
                      ..|+|||||.+|.-+|..|++.|    .+|+|+++.
T Consensus        12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~   47 (398)
T PRK06996         12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR   47 (398)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence            46999999999999999999876    479999885

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.94  E-value=0.016  Score=44.19  Aligned_cols=37  Identities=19%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.||+++|+|=|..|--+|..|+.+|.+|++....+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            3468999999999999999999999999999998843

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.78  E-value=0.075  Score=46.29  Aligned_cols=46  Identities=11%  Similarity=0.042  Sum_probs=34.4

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecC-CeeEEEcCEEEEccCCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANE-EITLHYNLLQSLPSSHNSVPN   90 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~-~~~~~~~~~vilAtG~~~~p~   90 (227)
                      +.++.++++++|.+|++     +.|.+.+. ++..+++|+||+|||+.+.|.
T Consensus        98 ~~gV~i~~~~~V~~i~~-----~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~  144 (376)
T TIGR03862        98 EQGVQFHTRHRWIGWQG-----GTLRFETPDGQSTIEADAVVLALGGASWSQ  144 (376)
T ss_pred             HCCCEEEeCCEEEEEeC-----CcEEEEECCCceEEecCEEEEcCCCccccc
Confidence            35789999999999832     45888764 334699999999999854333

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=94.75  E-value=0.035  Score=47.92  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999874

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=94.74  E-value=0.042  Score=44.04  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=33.5

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..++....|+|||+|++|+-.|.+|++.+-+|.+++|+
T Consensus        25 l~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~   62 (262)
T COG1635          25 LLDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK   62 (262)
T ss_pred             HHhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEee
Confidence            34455667999999999999999999999999999986

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.70  E-value=0.038  Score=48.31  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||||..|+=+|..|++.|.+|+++++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            679999999999999999999999999999854

>PLN02268 probable polyamine oxidase

Probab=94.68  E-value=0.041  Score=48.63  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~   33 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD   33 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            369999999999999999999999999998854

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.60  E-value=0.064  Score=44.78  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+|+|||+| ..|.-+|..|.+.+..||+.+...
T Consensus       153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t  191 (285)
T PRK14191        153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT  191 (285)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc
Confidence            35679999999999 789999999999999999987643

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.55  E-value=0.082  Score=46.95  Aligned_cols=77  Identities=21%  Similarity=0.342  Sum_probs=53.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCE-----EeccEEE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTS-----HPFDSII  190 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~-----i~~D~vi  190 (227)
                      +.+++|+|+|-|-+|.-+|..|.+.|.+|+++..+....+  ..        .......++.+..|+.     ..+|.|+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~--~~--------~~~~~~~~i~~~~g~~~~~~~~~~d~vV   74 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEG--LA--------AQPLLLEGIEVELGSHDDEDLAEFDLVV   74 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccc--hh--------hhhhhccCceeecCccchhccccCCEEE
Confidence            4489999999999999999999999999999976332210  00        1111122333434431     3589999


Q ss_pred             Ecccccccccccccc
Q psy810          191 YCTGAYKYSYKLTFL  205 (227)
Q Consensus       191 ~atG~~~~~~~~~~l  205 (227)
                      ...| ..++.  +.+
T Consensus        75 ~SPG-i~~~~--p~v   86 (448)
T COG0771          75 KSPG-IPPTH--PLV   86 (448)
T ss_pred             ECCC-CCCCC--HHH
Confidence            9999 99998  755

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.47  E-value=0.059  Score=43.06  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.+++|+|||||..|..=|..+.+.|.+|+++...
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~   44 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE   44 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence            456899999999999999999999999999999874

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.47  E-value=0.046  Score=47.90  Aligned_cols=33  Identities=21%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||||.+|+=+|..|++.|.+|+|+++++
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            469999999999999999999999999999854

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.40  E-value=0.066  Score=39.55  Aligned_cols=38  Identities=13%  Similarity=0.343  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~  152 (227)
                      .+.+++++|+|+|-+|--++..|...|. +|+++.|...
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~   47 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE   47 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            4568999999999999999999999875 5999999543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.39  E-value=0.052  Score=45.47  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|.|+|+|.+|.-+|..|.+.|.+|+++.|...
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~   34 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGA   34 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChH
Confidence            589999999999999999998999999998443

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=94.34  E-value=0.053  Score=47.02  Aligned_cols=32  Identities=25%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus         7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~   38 (388)
T PRK07608          7 DVVVVGGGLVGASLALALAQSGLRVALLAPRA   38 (388)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            59999999999999999999999999998753

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.34  E-value=0.09  Score=44.21  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.||+|+||| ++.+|.-+|..|.+.+..|+++++
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~  190 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHS  190 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECC
Confidence            56799999999 999999999999999999999964

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=94.33  E-value=0.075  Score=46.52  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCCeEEEEccCccHHHHHHHHHhc-c-CeEEEEeec
Q psy810          109 DYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV-A-KNVFLSHHI  150 (227)
Q Consensus       109 ~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~-~-~~Vtli~~~  150 (227)
                      .||.......-.|+|||||.+|+-+|.+|++. | .+|+|++++
T Consensus        21 ~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        21 AWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             ccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            46665544455799999999999999999986 7 589999885

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>KOG1276|consensus

Probab=94.32  E-value=0.054  Score=47.38  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCe--EEEEeecCccccccCCCceEEcCCccE-EeCCceEEcCCC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKN--VFLSHHISVAFKHQIGDSVVQKPDIKR-LLQDSVVFQDDT  182 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~--Vtli~~~~~~~~~~~~~~i~~~~~i~~-~~~~~v~~~~g~  182 (227)
                      .+++|+|+|||-+|+-+|.+|+++..+  |+|++.++ +    ....      |.. ..++++.++.|-
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~-R----vGGw------irS~r~~ng~ifE~GP   67 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP-R----VGGW------IRSDRMQNGFIFEEGP   67 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC-c----ccce------eeeccCCCceeeccCC
Confidence            478999999999999999999999655  55677743 3    2222      222 345667776663

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.27  E-value=0.05  Score=47.73  Aligned_cols=70  Identities=20%  Similarity=0.334  Sum_probs=46.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC--EEeccEEEEc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT--SHPFDSIIYC  192 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~--~i~~D~vi~a  192 (227)
                      +.+++++|||+|.+|.-+|.+|.+.| .+|++..|.-.+-. .+..         ++...-+.+.+-.  --++|.||.|
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~---------~~~~~~~~l~el~~~l~~~DvViss  245 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAK---------KLGAEAVALEELLEALAEADVVISS  245 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHH---------HhCCeeecHHHHHHhhhhCCEEEEe
Confidence            45789999999999999999999987 68888888432211 0111         1111223333322  1379999999


Q ss_pred             ccc
Q psy810          193 TGA  195 (227)
Q Consensus       193 tG~  195 (227)
                      ||+
T Consensus       246 Tsa  248 (414)
T COG0373         246 TSA  248 (414)
T ss_pred             cCC
Confidence            994

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.25  E-value=0.055  Score=47.38  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||||.+|+-+|.+|++.+.+|+|+++.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~   32 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ   32 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999985

>TIGR02028 ChlP geranylgeranyl reductase

Probab=94.25  E-value=0.056  Score=47.39  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|++|.-+|..+++.|.+|.|+++..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            59999999999999999999999999999853

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=94.21  E-value=0.056  Score=46.64  Aligned_cols=32  Identities=19%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|.=+|..|++.|.+|+++++..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~   32 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATP   32 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            38999999999999999999999999999864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07208 hypothetical protein; Provisional

Probab=94.15  E-value=0.059  Score=48.24  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4579999999999999999999999999999843

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=94.14  E-value=0.066  Score=46.27  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+|+|||||.+|+-+|.+|++.|.+|+++.+.
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~   36 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG   36 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence            357999999999999999999999999999875

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.12  E-value=0.13  Score=43.05  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.|++++|+|.|. .|.=+|..|.+.+..||+.++..
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T  193 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT  193 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC
Confidence            56799999999998 89999999999999999998843

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=94.10  E-value=0.06  Score=48.82  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..++++|.+|.|+++.
T Consensus         8 DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          8 DLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            5999999999999999999999999999985

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.09  E-value=0.07  Score=41.53  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|.|||+|.+|..+|..++..|.+|+|+.+.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            58999999999999999999999999998854

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.08  E-value=0.06  Score=46.73  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            369999999999999999999999999999853

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=94.08  E-value=0.058  Score=49.79  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+++|..+++.|.+|.|+++.
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            4999999999999999999999999999885

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.07  E-value=0.13  Score=43.03  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.|++++|||.|. .|.=+|..|.+.+..||+.+..
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~  197 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF  197 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc
Confidence            56799999999998 8999999999999999999874

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=94.06  E-value=0.066  Score=42.86  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=27.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .-.|+|||+|++|+-+|..|++.+.+|.+++++
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~   49 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK   49 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecC
Confidence            346999999999999999999999999999985

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=94.03  E-value=0.061  Score=46.92  Aligned_cols=31  Identities=16%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..|++.  +.+|+|+++.
T Consensus         4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~   36 (393)
T PRK11728          4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE   36 (393)
T ss_pred             cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            599999999999999999998  9999999885

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=93.97  E-value=0.065  Score=46.10  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~   32 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS   32 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4899999999999999999999999999874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08244 hypothetical protein; Provisional

Probab=93.95  E-value=0.066  Score=48.24  Aligned_cols=32  Identities=19%  Similarity=0.449  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|.+.|.+|+|+++.+
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~   35 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGVKTCVIERLK   35 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999999853

>PRK08013 oxidoreductase; Provisional

Probab=93.94  E-value=0.068  Score=46.76  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|.=+|..|++.|.+|+++++.+
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~   36 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV   36 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence            369999999999999999999999999999854

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=93.94  E-value=0.071  Score=47.43  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhc----cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|+-+|..|.+.    |.+|+|+++++
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~   39 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD   39 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence            4799999999999999999998    89999999854

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=93.94  E-value=0.067  Score=46.24  Aligned_cols=30  Identities=23%  Similarity=0.448  Sum_probs=28.6

Q ss_pred             EEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      |+|||+|.+|+-+|..|++.| .+|+++++.
T Consensus         2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~   32 (382)
T TIGR01984         2 VIIVGGGLVGLSLALALSRLGKIKIALIEAN   32 (382)
T ss_pred             EEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence            899999999999999999999 999999885

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=93.87  E-value=0.071  Score=48.79  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|.+|++.|.+|+|+++.
T Consensus         8 DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          8 DVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            5999999999999999999999999999985

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=93.83  E-value=0.082  Score=43.57  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .-.|+|||+|++|+-+|..+++.|.+|.++++..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            4569999999999999999999999999999753

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=93.81  E-value=0.082  Score=46.18  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|..|+=+|..|++.|.+|+|+++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS   35 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999999865

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.76  E-value=0.089  Score=46.52  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus       210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp  245 (425)
T PRK05476        210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP  245 (425)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            478999999999999999999999999999988743

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.73  E-value=0.29  Score=42.37  Aligned_cols=78  Identities=15%  Similarity=0.291  Sum_probs=51.8

Q ss_pred             EEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--cccC-----------------CC-----ceE--EcCCccEEe
Q psy810          121 VLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--KHQI-----------------GD-----SVV--QKPDIKRLL  172 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--~~~~-----------------~~-----~i~--~~~~i~~~~  172 (227)
                      ++|+|+|..|...|..+.+.  ..+|+++.+....-  ...+                 +.     ++.  ..+.+..++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id   80 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID   80 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence            47999999999999988875  56788776642110  0000                 01     122  223455555


Q ss_pred             C--CceEEcCCCEEeccEEEEccccccccc
Q psy810          173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .  ..+.+.+| .+.+|.+++||| ..+..
T Consensus        81 ~~~~~v~~~~g-~~~yd~LvlatG-a~~~~  108 (415)
T COG0446          81 PENKVVLLDDG-EIEYDYLVLATG-ARPRP  108 (415)
T ss_pred             CCCCEEEECCC-cccccEEEEcCC-CcccC
Confidence            3  34777788 889999999999 88876

>PRK06126 hypothetical protein; Provisional

Probab=93.73  E-value=0.074  Score=48.56  Aligned_cols=33  Identities=30%  Similarity=0.548  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||||.+|+=+|..|++.|.+|+|+++..
T Consensus         8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999999863

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=93.73  E-value=0.08  Score=46.16  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            469999999999999999999999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=93.70  E-value=0.088  Score=43.34  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=30.7

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .-.|+|||+|.+|+-+|..+++.+.+|.++++..
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~   54 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL   54 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3469999999999999999999999999999853

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.68  E-value=0.14  Score=42.84  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEee
Q psy810          114 DPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       114 ~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .++.||+++|||. |.+|.=+|..|.+.+..||+++.
T Consensus       154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s  190 (284)
T PRK14179        154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHS  190 (284)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECC
Confidence            3567999999998 99999999999999999999865

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=93.65  E-value=0.08  Score=46.01  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||||.+|.-+|..|++.|.+|+++++.
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~   37 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHA   37 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence            36999999999999999999999999999875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=93.65  E-value=0.074  Score=46.50  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||.+|+=+|..|.+.|.+|+++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            59999999999999999999999999999853

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.61  E-value=0.074  Score=46.10  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+=+|..|++.|.+|+++++.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            5999999999999999999999999999974

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=93.60  E-value=0.085  Score=44.80  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=31.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|+|+|..|.-+|..+.+.+.+|+++.|++.
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~   35 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEE   35 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHH
Confidence            4799999999999999999999999999999543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.59  E-value=0.079  Score=49.63  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~  292 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD  292 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence            47999999999999999999999999999885

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.59  E-value=0.084  Score=47.77  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..|+++|.+|.|+++.
T Consensus         8 DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          8 DLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5999999999999999999999999999985

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=93.58  E-value=0.083  Score=46.02  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|++|.-+|..|++.|.+|.++++.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4899999999999999999999999999985

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.57  E-value=0.15  Score=42.48  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.||+++|||.| ..|.=+|..|.+.+..||+.+..
T Consensus       154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~  190 (281)
T PRK14183        154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF  190 (281)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence            5679999999988 68889999999889999988763

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=93.55  E-value=0.1  Score=47.03  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||+|..|+-+|..|++.|.+|++++++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~   34 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA   34 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            579999999999999999999999999999853

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06185 hypothetical protein; Provisional

Probab=93.53  E-value=0.087  Score=46.03  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+=+|..|++.|.+|+|+++.
T Consensus         7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~   38 (407)
T PRK06185          7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH   38 (407)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            46999999999999999999999999999985

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=93.52  E-value=0.17  Score=41.98  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +..|++++|||.|++ |-=+|..|.+.+..||+.|++.
T Consensus       153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T  190 (283)
T COG0190         153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT  190 (283)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC
Confidence            567999999998886 4568999988899999998854

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=93.52  E-value=0.096  Score=45.67  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+++.++
T Consensus         3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~   33 (377)
T TIGR00031         3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKR   33 (377)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4899999999999999999889999999984

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.45  E-value=0.15  Score=43.90  Aligned_cols=37  Identities=14%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus       228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T  265 (364)
T PLN02616        228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT  265 (364)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC
Confidence            56799999999766 56779999998899999998743

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=93.42  E-value=0.2  Score=44.72  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -.|+|||||++|.-+|..|++.|.+|.|+++..
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            369999999999999999999999999999863

>TIGR02731 phytoene_desat phytoene desaturase

Probab=93.40  E-value=0.092  Score=46.69  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~   32 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD   32 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            48999999999999999999999999999853

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=93.40  E-value=0.097  Score=46.68  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=28.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc------CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|+-+|..|.+.+      .+|+|++.++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~   40 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE   40 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence            47999999999999999998852      6899999853

>PRK07538 hypothetical protein; Provisional

Probab=93.39  E-value=0.097  Score=46.00  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||||..|+=+|..|.+.|.+|+++++.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            59999999999999999999999999999853

>PLN02576 protoporphyrinogen oxidase

Probab=93.35  E-value=0.11  Score=46.84  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      .+|+|||||.+|+-+|..|.+. |.+|++++.++
T Consensus        13 ~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~   46 (496)
T PLN02576         13 KDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD   46 (496)
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            4699999999999999999998 89999999853

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.32  E-value=0.13  Score=46.31  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=30.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+|+|||+|..|+=+|..|++.|.+|+++++.
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~   35 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKN   35 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEec
Confidence            357999999999999999999999999999973

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.32  E-value=0.2  Score=33.76  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~  149 (227)
                      .+.+++++|+|.|.+|.-++..+.+. +.+|+++.|
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35678999999999999999999988 678888766

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.31  E-value=0.19  Score=38.95  Aligned_cols=41  Identities=17%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ......+++|.|+|-|.+|-++|..+..+|-+|+.+.|...
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            34566799999999999999999999999999999988543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=93.26  E-value=0.095  Score=45.49  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=29.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhc---cCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~  150 (227)
                      -+|+|||+|.+|+-+|..|++.   |.+|+++++.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            3699999999999999999998   9999999983

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.23  E-value=0.17  Score=43.28  Aligned_cols=37  Identities=14%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus       211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T  248 (345)
T PLN02897        211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT  248 (345)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC
Confidence            56799999999776 57789999988889999998743

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=93.22  E-value=0.11  Score=45.19  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=28.2

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|.-+|..|.+.|.+|+|+++.
T Consensus         2 viIiGaG~AGl~~A~~la~~g~~v~liE~~   31 (388)
T TIGR01790         2 LAVIGGGPAGLAIALELARPGLRVQLIEPH   31 (388)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEccC
Confidence            899999999999999999989999999975

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.21  E-value=0.18  Score=42.54  Aligned_cols=43  Identities=14%  Similarity=0.034  Sum_probs=33.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEE-EecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLH-FANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~-v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .++.++.+++|.++...+   +.+. |.+.+++ +.+|+||+|+|.+.
T Consensus       160 ~Gv~i~~~~~V~~i~~~~---~~v~gv~~~~g~-i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  160 AGVEIRTGTEVTSIDVDG---GRVTGVRTSDGE-IRADRVVLAAGAWS  203 (358)
T ss_dssp             TT-EEEESEEEEEEEEET---TEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred             hhhhccccccccchhhcc---cccccccccccc-cccceeEecccccc
Confidence            367899999999998644   5677 9999997 99999999999854

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=93.19  E-value=0.086  Score=47.55  Aligned_cols=31  Identities=16%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|||+|..|+-+|..|++.|.+|+|+++..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~   31 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD   31 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            6899999999999999999999999999853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=93.19  E-value=0.11  Score=48.46  Aligned_cols=31  Identities=32%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..+++.|.+|.|+++.
T Consensus        73 DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         73 DVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            5999999999999999999999999999885

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=93.16  E-value=0.11  Score=45.92  Aligned_cols=31  Identities=19%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|.-+|..|++.|.+|.++++.
T Consensus         7 DViIVGaGpAG~~aA~~La~~G~~V~llEr~   37 (428)
T PRK10157          7 DAIIVGAGLAGSVAALVLAREGAQVLVIERG   37 (428)
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCeEEEEEcC
Confidence            5999999999999999999999999999885

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=93.10  E-value=0.13  Score=45.10  Aligned_cols=32  Identities=31%  Similarity=0.515  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|.-+|..|++.|-+|.+++++.
T Consensus         5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~   36 (396)
T COG0644           5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGS   36 (396)
T ss_pred             eEEEECCchHHHHHHHHHHHcCCeEEEEecCC
Confidence            59999999999999999999999999999864

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.94  E-value=0.17  Score=44.94  Aligned_cols=78  Identities=18%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---E--EeccEEE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---S--HPFDSII  190 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~--i~~D~vi  190 (227)
                      +.+++++|+|.|-+|+..|..|.+.|.+|+++...... .  ..      ..+.+. ..++.+..|.   .  -.+|.||
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~-~--~~------~~l~~~-~~gi~~~~g~~~~~~~~~~d~vv   72 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP-E--RV------AQIGKM-FDGLVFYTGRLKDALDNGFDILA   72 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc-h--hH------HHHhhc-cCCcEEEeCCCCHHHHhCCCEEE
Confidence            34789999999999999999999999999988763221 0  00      001110 0133322221   1  2589999


Q ss_pred             EccccccccccccccC
Q psy810          191 YCTGAYKYSYKLTFLA  206 (227)
Q Consensus       191 ~atG~~~~~~~~~~l~  206 (227)
                      ...| ..|+.  +.+.
T Consensus        73 ~spg-i~~~~--p~~~   85 (445)
T PRK04308         73 LSPG-ISERQ--PDIE   85 (445)
T ss_pred             ECCC-CCCCC--HHHH
Confidence            9999 99888  7664

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=92.92  E-value=0.11  Score=45.94  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=25.3

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|||||.+|+-.|..+++.|.+|.|+++.+
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~   32 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG   32 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence            8999999999999999999999999999864

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=92.91  E-value=0.28  Score=42.59  Aligned_cols=44  Identities=7%  Similarity=0.105  Sum_probs=36.1

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV   88 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~   88 (227)
                      ++.+++++.|.+++..+   +.+.+.+.++..+.+|+||+|+|.|..
T Consensus       148 G~~i~~~~~V~~i~~~~---~~~~v~t~~g~~~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       148 RLTLHFNTEITSLERDG---EGWQLLDANGEVIAASVVVLANGAQAG  191 (381)
T ss_pred             CcEEEeCCEEEEEEEcC---CeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence            56889999999987533   568888888877999999999998653

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=92.91  E-value=0.12  Score=46.24  Aligned_cols=31  Identities=29%  Similarity=0.314  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|.+|++.  |.+|+|+++.
T Consensus        26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            599999999999999999997  8899999874

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=92.80  E-value=0.12  Score=47.15  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|.+.|.+|+++++..
T Consensus        24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            469999999999999999999999999998864

>PRK10015 oxidoreductase; Provisional

Probab=92.79  E-value=0.14  Score=45.48  Aligned_cols=32  Identities=19%  Similarity=0.345  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|.=+|..|++.|.+|.++++..
T Consensus         7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~   38 (429)
T PRK10015          7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGD   38 (429)
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            59999999999999999999999999998853

>PRK07190 hypothetical protein; Provisional

Probab=92.68  E-value=0.14  Score=46.20  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|+=+|..|.+.|.+|+++++.+
T Consensus         7 dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~   38 (487)
T PRK07190          7 DVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD   38 (487)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            69999999999999999999999999998864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.67  E-value=0.089  Score=46.91  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|+|.|.+|+.+|..|.+.|.+|+++.+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~   32 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN   32 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            5899999999999999999999999999874

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=92.66  E-value=0.15  Score=47.76  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+|+|||||..|+=+|..|.+.|.+|++++|.
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~  113 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD  113 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence            3568999999999999999999999999999985

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.65  E-value=0.18  Score=44.57  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=31.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      ++|.|||.|.+|.-+|..|++.|.+|+.+.+.....
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v   39 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAV   39 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHH
Confidence            579999999999999999999999999998855433

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=92.62  E-value=0.14  Score=46.72  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+=+|..|.+.|.+|+++++..
T Consensus        11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~   43 (538)
T PRK06183         11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP   43 (538)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            469999999999999999999999999999864

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=92.59  E-value=0.16  Score=45.22  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~  150 (227)
                      ++++|||||.+|+-.|..|.+.+  .+|+|++.+
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~   34 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD   34 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            47999999999999999999998  789999984

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.57  E-value=0.24  Score=39.22  Aligned_cols=38  Identities=16%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..++.+++++|+|.|.+|..+|..|.+.|.+|+++.+.
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            34567899999999999999999999999999987764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02529 lysine-specific histone demethylase 1

Probab=92.56  E-value=0.16  Score=48.14  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=31.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..++|+|||+|.+|+.+|..|.+.|.+|++++.++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            35789999999999999999999999999998854

>PRK10637 cysG siroheme synthase; Provisional

Probab=92.52  E-value=0.16  Score=45.42  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.+++|+|||||..|..=+..|.+.+.+||++..
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp   43 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL   43 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            45689999999999999999999999999999976

>KOG2614|consensus

Probab=92.48  E-value=0.2  Score=43.72  Aligned_cols=33  Identities=21%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||||-.|+-.|..|.+.|-+|.+++.+.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e   35 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE   35 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence            579999999999999999999999999998754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.47  E-value=0.18  Score=42.23  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..++..|.+|+++.+.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999988543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=92.44  E-value=0.19  Score=41.60  Aligned_cols=31  Identities=19%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|..|+-.|..|+..|.+||+++++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg   33 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG   33 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence            5899999999999999999999999999885

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=92.43  E-value=0.27  Score=43.44  Aligned_cols=43  Identities=16%  Similarity=0.018  Sum_probs=36.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHN   86 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~   86 (227)
                      +++++|+++|..+...+.  ..+.+.+.+|..+.+|+||+|.|..
T Consensus       187 G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         187 GGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             CcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcc
Confidence            579999999999886332  3577888999999999999999973

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=92.42  E-value=0.16  Score=45.72  Aligned_cols=32  Identities=25%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-.|..|.+.|.+|+++++.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~   32 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS   32 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            48999999999999999999999999999843

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.35  E-value=0.22  Score=41.79  Aligned_cols=38  Identities=29%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +..+++++|+|.|.+|..+|..|...|.+|+++.|...
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            55689999999999999999999999999999988543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.34  E-value=0.18  Score=37.05  Aligned_cols=32  Identities=22%  Similarity=0.511  Sum_probs=28.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH  149 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~  149 (227)
                      .++|+|+|.|..|.++|..|.+.|. +++++..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence            4789999999999999999999875 7999977

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02985 squalene monooxygenase

Probab=92.34  E-value=0.16  Score=46.14  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+=+|..|++.|.+|+++++.
T Consensus        44 ~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~   75 (514)
T PLN02985         44 TDVIIVGAGVGGSALAYALAKDGRRVHVIERD   75 (514)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence            47999999999999999999999999999985

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.28  E-value=0.2  Score=42.73  Aligned_cols=33  Identities=12%  Similarity=0.054  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|..+|..++..|.+|+++.+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            689999999999999999999999999998853

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.24  E-value=0.15  Score=42.69  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            5799999999999999999999999999988543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=92.23  E-value=0.15  Score=45.20  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             eEEEEccCccHHHHHHHHHh----ccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEK----VAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~----~~~~Vtli~~  149 (227)
                      .|+|||||.+|+=+|..|++    .|.+|+++++
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~   35 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA   35 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence            48999999999999999998    6899999998

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=92.16  E-value=0.19  Score=44.94  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             eEEEEccCccHHHHHHHHHhcc---CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~  150 (227)
                      +|+|||||.+|.-+|..|++.+   .+|+|+++.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~   34 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP   34 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            5899999999999999999987   789999885

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.05  E-value=0.34  Score=40.46  Aligned_cols=38  Identities=13%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|||.+. .|.=+|+.|.+.+..||+.+.+.
T Consensus       153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T  191 (284)
T PRK14170        153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT  191 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            356799999999776 56779999998899999998843

>PLN02487 zeta-carotene desaturase

Probab=92.04  E-value=0.21  Score=45.98  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|+-+|..|.+.|.+|+++++.+
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~  108 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP  108 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence            489999999999999999999999999999843

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.04  E-value=0.46  Score=42.14  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=50.6

Q ss_pred             EEEEccCccHHHHH-HHHH----hccCeEEEEeecCccccc---------cC---CCceEEcCCccEEeC--Cce---EE
Q psy810          121 VLLVGFGPSGVDIA-MDIE----KVAKNVFLSHHISVAFKH---------QI---GDSVVQKPDIKRLLQ--DSV---VF  178 (227)
Q Consensus       121 v~VvGgG~~g~e~a-~~l~----~~~~~Vtli~~~~~~~~~---------~~---~~~i~~~~~i~~~~~--~~v---~~  178 (227)
                      =+|++.|.+|+|.+ ..+.    +.|.+|+++.+.++.+..         .+   .-.+..+..+.++..  +++   ..
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~  297 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWT  297 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence            36789999999998 6664    359999999775443211         11   124444556666642  222   23


Q ss_pred             cCCC--EEeccEEEEccccccccc
Q psy810          179 QDDT--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       179 ~~g~--~i~~D~vi~atG~~~~~~  200 (227)
                      .+|.  .+.+|.+|+|+| ..++.
T Consensus       298 ~~g~~~~i~AD~VVLAtG-rf~s~  320 (422)
T PRK05329        298 RNHGDIPLRARHFVLATG-SFFSG  320 (422)
T ss_pred             eCCceEEEECCEEEEeCC-CcccC
Confidence            4454  478999999999 65544

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=91.98  E-value=0.18  Score=45.45  Aligned_cols=31  Identities=16%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||||-+|+-+|..|++.  +.+|+|+++.
T Consensus         2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~   34 (483)
T TIGR01320         2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL   34 (483)
T ss_pred             cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            489999999999999999997  8899999883

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.98  E-value=0.4  Score=40.03  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|-=+|+.|.+.+..||+.++..
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T  192 (282)
T PRK14180        155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT  192 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC
Confidence            56799999999766 67789999988899999998843

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=91.91  E-value=0.19  Score=44.78  Aligned_cols=30  Identities=33%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|+.|..+|..+.+.+.+|.|+++
T Consensus         5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            499999999999999999999999999987

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.90  E-value=0.37  Score=40.21  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus       153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T  190 (282)
T PRK14169        153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT  190 (282)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC
Confidence            56799999999766 57789999998899999998743

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=91.88  E-value=0.18  Score=47.05  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      -.|+|||+|++|+-+|..|++. |.+|+++++++
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~   66 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP   66 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence            4699999999999999999995 99999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.87  E-value=0.23  Score=41.51  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|+|+|+|.+|..+|..+++.|.+|+++.+...
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5799999999999999999999999999988543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.81  E-value=0.4  Score=41.62  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-------CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-------KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-------~~Vtli~~~~  151 (227)
                      ..+|.|+|+|..|.-+|..|.+.+       .+|+|+.|+.
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~   51 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE   51 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence            458999999999999999999876       6899998854

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=91.81  E-value=0.22  Score=45.12  Aligned_cols=33  Identities=27%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -.|+|||||.+|+.+|..++.+|-+|.|+++++
T Consensus        13 ~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D   45 (532)
T COG0578          13 FDVIVIGGGITGAGIARDAAGRGLKVALVEKGD   45 (532)
T ss_pred             CCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence            469999999999999999999999999998853

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.78  E-value=0.31  Score=38.13  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.+++++|+|+ |.+|..++..+.+.+.+|+++.|..
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~   62 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL   62 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            456789999997 9999999999999888999998853

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09897 hypothetical protein; Provisional

Probab=91.77  E-value=0.22  Score=45.46  Aligned_cols=32  Identities=16%  Similarity=0.401  Sum_probs=27.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~  150 (227)
                      ++|+|||+|++|+-+|..|.+.+.  +|+|++++
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~   35 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA   35 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence            479999999999999999987643  79999874

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.73  E-value=0.4  Score=40.12  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T  189 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT  189 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999766 67789999998899999998843

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=91.70  E-value=0.22  Score=43.64  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=27.2

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|||+|.+|+-.|..+++.|.+|.|++...
T Consensus         2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~   32 (417)
T PF00890_consen    2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP   32 (417)
T ss_dssp             EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence            8999999999999999999999999998854

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=91.64  E-value=0.28  Score=41.60  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|||+|.+|+=+|..+++.|++|-++.+++
T Consensus         3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~   34 (374)
T COG0562           3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN   34 (374)
T ss_pred             cEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence            47899999999999998888899999999953

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.56  E-value=0.42  Score=40.10  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|||.+. .|.=+|+.|.+.+..||+.|...
T Consensus       156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T  194 (294)
T PRK14187        156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT  194 (294)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC
Confidence            356799999999766 56779999998899999998843

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.56  E-value=0.42  Score=39.99  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus       156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T  193 (288)
T PRK14171        156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT  193 (288)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999766 56779999988899999998743

>PRK11445 putative oxidoreductase; Provisional

Probab=91.54  E-value=0.22  Score=42.76  Aligned_cols=31  Identities=23%  Similarity=0.415  Sum_probs=28.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|.-+|..|++. .+|+++++.+
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~   33 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH   33 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence            589999999999999999998 8999999854

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.53  E-value=0.23  Score=44.39  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC----E-EeccEEEE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT----S-HPFDSIIY  191 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~----~-i~~D~vi~  191 (227)
                      .+++|+|+|.|-+|.-+|..|.+.|.+|+++.+.....   .+..      ...+...++.+..|.    . -.+|.||.
T Consensus        13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~~~------~~~l~~~gi~~~~~~~~~~~~~~~dlVV~   83 (458)
T PRK01710         13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LGEV------SNELKELGVKLVLGENYLDKLDGFDVIFK   83 (458)
T ss_pred             cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---chHH------HHHHHhCCCEEEeCCCChHHhccCCEEEE
Confidence            46899999999999999999999999999988643111   0000      001111222221111    1 25899999


Q ss_pred             cccccccccccccc
Q psy810          192 CTGAYKYSYKLTFL  205 (227)
Q Consensus       192 atG~~~~~~~~~~l  205 (227)
                      ..| ..++.  +.+
T Consensus        84 Spg-i~~~~--p~~   94 (458)
T PRK01710         84 TPS-MRIDS--PEL   94 (458)
T ss_pred             CCC-CCCCc--hHH
Confidence            999 88877  655

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.48  E-value=0.43  Score=39.85  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|-=+|+.|.+.+..||+.|++.
T Consensus       154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T  191 (282)
T PRK14166        154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  191 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999776 56779999988899999998843

>PLN02612 phytoene desaturase

Probab=91.45  E-value=0.33  Score=44.75  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|||+|.+|+-.|..|.+.|.+|+++++++
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~  126 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD  126 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            346789999999999999999999999999999843

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=91.41  E-value=0.4  Score=43.41  Aligned_cols=42  Identities=12%  Similarity=0.045  Sum_probs=35.1

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +.++++++|.+|...++  +.|.|.++++ .+.+|+||+|+|.|.
T Consensus       232 v~i~~~t~V~~I~~~~~--~~~~V~T~~G-~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        232 ISINLNTEVLNIERSND--SLYKIHTNRG-EIRARFVVVSACGYS  273 (497)
T ss_pred             EEEEeCCEEEEEEecCC--CeEEEEECCC-EEEeCEEEECcChhH
Confidence            67899999999986433  5688988887 699999999999865

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.39  E-value=0.24  Score=44.69  Aligned_cols=72  Identities=13%  Similarity=0.219  Sum_probs=48.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC----EE-eccEEEE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT----SH-PFDSIIY  191 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~----~i-~~D~vi~  191 (227)
                      .+++|+|+|.|.+|.-++..|.+.|.+|++..++...... +             ...++.+..+.    .+ .+|.||.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~-l-------------~~~g~~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP-H-------------AERGVATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-H-------------HhCCCEEEcCcchHhHhhcCCEEEE
Confidence            5789999999999999999999999999998753221110 0             00111121111    12 4799999


Q ss_pred             cccccccccccccc
Q psy810          192 CTGAYKYSYKLTFL  205 (227)
Q Consensus       192 atG~~~~~~~~~~l  205 (227)
                      +.| ..++.  +.+
T Consensus        77 SpG-i~~~~--p~~   87 (488)
T PRK03369         77 SPG-FRPTA--PVL   87 (488)
T ss_pred             CCC-CCCCC--HHH
Confidence            999 98887  655

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.38  E-value=0.28  Score=41.09  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            6799999999999999999999999999988543

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.35  E-value=0.47  Score=39.93  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus       155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T  192 (297)
T PRK14186        155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT  192 (297)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999766 67789999998899999998743

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.34  E-value=0.26  Score=41.67  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            469999999999999999999999999999854

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=91.30  E-value=0.26  Score=44.06  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus         6 DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~   36 (466)
T PRK08274          6 DVLVIGGGNAALCAALAAREAGASVLLLEAA   36 (466)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999999999999874

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.26  E-value=0.3  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~  152 (227)
                      ++|+|+|.|.+|.-+|..|...+  .++.|+.+...
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            47999999999999999998876  58999988443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.22  E-value=0.24  Score=41.50  Aligned_cols=35  Identities=20%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+.+..
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~   38 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI   38 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence            67999999999999999999999999999885443

>PTZ00367 squalene epoxidase; Provisional

Probab=91.22  E-value=0.24  Score=45.63  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .-.|+|||||..|+-+|..|.+.|.+|++++|..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3469999999999999999999999999999853

>KOG1346|consensus

Probab=91.12  E-value=0.44  Score=41.92  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             CceEEcCCCEEeccEEEEccccccccccccccCCcc
Q psy810          174 DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFS  209 (227)
Q Consensus       174 ~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~g  209 (227)
                      +-|++.||.+|.+|..++||| .+|.. ++.|+..+
T Consensus       288 ~~V~LnDG~~I~YdkcLIATG-~~Pk~-l~~~~~A~  321 (659)
T KOG1346|consen  288 KKVILNDGTTIGYDKCLIATG-VRPKK-LQVFEEAS  321 (659)
T ss_pred             CeEEecCCcEeehhheeeecC-cCccc-chhhhhcC
Confidence            348999999999999999999 88864 35555443

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=91.10  E-value=0.27  Score=43.50  Aligned_cols=30  Identities=33%  Similarity=0.538  Sum_probs=28.1

Q ss_pred             EEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      |+|||+|.+|+-.|..+++.| .+|+|+++.
T Consensus         2 VvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~   32 (439)
T TIGR01813         2 VVVVGSGFAGLSAALSAKKAGAANVVLLEKM   32 (439)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCccEEEEecC
Confidence            899999999999999999999 899999874

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.03  E-value=0.54  Score=39.24  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T  191 (282)
T PRK14182        154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT  191 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999776 56779999988888999998743

>PLN02568 polyamine oxidase

Probab=91.01  E-value=0.35  Score=44.23  Aligned_cols=34  Identities=12%  Similarity=0.223  Sum_probs=29.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-----CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-----KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-----~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.|     .+|++++++.
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~   43 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGD   43 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCC
Confidence            357999999999999999999876     7899999854

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.98  E-value=0.32  Score=40.34  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      .+...+|+|+|.|-.|.++|..|++.| .+++|+...
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456789999999999999999999997 689999873

>PLN02676 polyamine oxidase

Probab=90.94  E-value=0.3  Score=44.15  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=30.6

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      +..+|+|||+|.+|+-+|..|.+.|. +|+++++++
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~   60 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD   60 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            34579999999999999999999986 699998854

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=90.93  E-value=0.3  Score=46.68  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+-.|..|.+.|.+|++++.+.
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~  271 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA  271 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            4689999999999999999999999999998853

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=90.91  E-value=0.43  Score=43.79  Aligned_cols=34  Identities=12%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc----cCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV----AKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~----~~~Vtli~~~  150 (227)
                      ..++++|||+|.+|+-.|..|.+.    |.+|+|+++.
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~   58 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEEL   58 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCC
Confidence            357899999999999999999985    5799999875

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=90.91  E-value=0.25  Score=41.61  Aligned_cols=79  Identities=14%  Similarity=0.062  Sum_probs=54.8

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcc--------------cceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHH
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLF--------------RGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMD  136 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~--------------~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~  136 (227)
                      -..+.|..|-.+-|.  .|.+-++..+...              .|+.+...-+.   -..+.+|+|+|||..|.+.|..
T Consensus       112 vtaIayETV~~~~g~--lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvp---GV~~~kv~iiGGGvvgtnaAki  186 (371)
T COG0686         112 VTAIAYETVQLPDGN--LPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVP---GVLPAKVVVLGGGVVGTNAAKI  186 (371)
T ss_pred             cceEEEEEEEcCCCC--CcccchHHHHhhhHHHHHHHHHHHhccCCceeEecCCC---CCCCccEEEECCccccchHHHH
Confidence            367889999999988  7777666432110              12222222111   1235689999999999999999


Q ss_pred             HHhccCeEEEEeecCccc
Q psy810          137 IEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       137 l~~~~~~Vtli~~~~~~~  154 (227)
                      ...+|.+||++.+..+++
T Consensus       187 A~glgA~Vtild~n~~rl  204 (371)
T COG0686         187 AIGLGADVTILDLNIDRL  204 (371)
T ss_pred             HhccCCeeEEEecCHHHH
Confidence            999999999998865544

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.89  E-value=0.54  Score=39.31  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|||.+. .|-=+|+.|.+.+..||+.+++.
T Consensus       155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T  193 (284)
T PRK14177        155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT  193 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC
Confidence            356799999999766 66779999998899999998743

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.88  E-value=0.56  Score=39.11  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.+..||+.+++.
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T  192 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT  192 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence            56799999999665 67789999988899999998743

>KOG1298|consensus

Probab=90.85  E-value=0.33  Score=42.23  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|-.|.-+|..|.+.|.+|++++|.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            4999999999999999999999999999994

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=90.78  E-value=0.59  Score=39.37  Aligned_cols=38  Identities=18%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|||.+. .|.=+|+.|.+.+..||+.|.+.
T Consensus       163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T  201 (299)
T PLN02516        163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT  201 (299)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC
Confidence            356799999999776 57779999998899999998843

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.76  E-value=0.49  Score=39.45  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.|++|+|+|.+ ..|.-+|+.|.+.+..||+.+++.
T Consensus       149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t  186 (279)
T PRK14178        149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT  186 (279)
T ss_pred             CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh
Confidence            5679999999998 788889999999999999998854

>PRK04148 hypothetical protein; Provisional

Probab=90.75  E-value=0.44  Score=35.22  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .++++++||.| .|.++|..|.+.|.+|+.+...+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            35789999999 999999999999999999987443

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.68  E-value=0.57  Score=39.21  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.    +..||+.|++.
T Consensus       150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T  191 (287)
T PRK14181        150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS  191 (287)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC
Confidence            56799999999776 577799999887    78999988743

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.61  E-value=0.47  Score=39.99  Aligned_cols=37  Identities=30%  Similarity=0.558  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+++++|+|.|.+|..++..|.+.|.+|+++.|+.
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3458999999999999999999999999999998854

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=90.60  E-value=0.39  Score=41.16  Aligned_cols=36  Identities=8%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      ++.+++++|||+|.+|--+|.+|...| .+|++..|.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt  207 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ  207 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            456899999999999999999999987 679999884

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.51  E-value=0.43  Score=40.33  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.+|.|+|.|..|.-+|..|.+.|.+|+++.|.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~   36 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRR   36 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3568999999999999999999999999999884

>PLN03000 amine oxidase

Probab=90.45  E-value=0.36  Score=46.47  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+.+|..|.+.+.+|++++.++
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~  217 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK  217 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            4789999999999999999999999999999854

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.44  E-value=0.63  Score=38.94  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.||+++|||.+. .|-=+|+.|.+.+..||+.+.+
T Consensus       155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~  191 (284)
T PRK14190        155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK  191 (284)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC
Confidence            56799999999766 6777999998889999998774

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.42  E-value=0.43  Score=36.51  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=30.1

Q ss_pred             EEEEcc-CccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          121 VLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       121 v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      |+|+|+ |.+|-.++..|.+.+.+|+.+.|++...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~   35 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKA   35 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhc
Confidence            688996 9999999999999999999999965543

...

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=90.38  E-value=0.56  Score=40.36  Aligned_cols=45  Identities=9%  Similarity=-0.050  Sum_probs=35.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .+++++.+++|.++...+   +.+.+.++++ .+.+|+||+|+|.+...
T Consensus       162 ~gv~i~~~~~v~~i~~~~---~~~~v~~~~g-~~~a~~vV~A~G~~~~~  206 (376)
T PRK11259        162 AGAELLFNEPVTAIEADG---DGVTVTTADG-TYEAKKLVVSAGAWVKD  206 (376)
T ss_pred             CCCEEECCCEEEEEEeeC---CeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence            467888899999987633   4677888777 69999999999996543

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=90.35  E-value=0.5  Score=40.29  Aligned_cols=41  Identities=15%  Similarity=0.284  Sum_probs=35.6

Q ss_pred             CCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          110 YRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       110 ~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -++...+.+++|.|||-|.+|..+|..|...|-+|++..+.
T Consensus         8 d~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~   48 (335)
T PRK13403          8 DANVELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP   48 (335)
T ss_pred             cCChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc
Confidence            34556778999999999999999999999999999988663

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=90.30  E-value=0.57  Score=39.46  Aligned_cols=45  Identities=13%  Similarity=-0.144  Sum_probs=33.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV   88 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~   88 (227)
                      .+..++.+++|..+...+.  ..+.+.++++ .+.+|+||+|+|.+..
T Consensus       150 ~g~~~~~~~~v~~i~~~~~--~~~~v~~~~g-~~~a~~vV~a~G~~~~  194 (337)
T TIGR02352       150 LGVEIIEHTEVQHIEIRGE--KVTAIVTPSG-DVQADQVVLAAGAWAG  194 (337)
T ss_pred             cCCEEEccceEEEEEeeCC--EEEEEEcCCC-EEECCEEEEcCChhhh
Confidence            3568889999999885331  2345677777 7999999999999653

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=90.27  E-value=0.34  Score=43.90  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=28.5

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~  149 (227)
                      .|+|||||-+|+-+|..|++.  +.+|+|++|
T Consensus         8 DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            599999999999999999998  789999999

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.25  E-value=0.41  Score=40.12  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=30.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..++..|.+|+++.+...
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6799999999999999999999999999988543

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.20  E-value=0.74  Score=38.37  Aligned_cols=37  Identities=14%  Similarity=0.149  Sum_probs=31.4

Q ss_pred             CCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+.+++++|.| +|.+|..+|..|.+.|.+|+++.|.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            355678999998 4789999999999999999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=90.19  E-value=0.82  Score=40.13  Aligned_cols=45  Identities=18%  Similarity=-0.041  Sum_probs=34.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .++.++++++|.++...+   +.+.+.++ +..+.+|+||+|+|..+.|
T Consensus       118 ~gv~i~~~~~V~~i~~~~---~~~~v~~~-~~~i~ad~VIlAtG~~s~p  162 (400)
T TIGR00275       118 LGVEILTNSKVKSIKKDD---NGFGVETS-GGEYEADKVILATGGLSYP  162 (400)
T ss_pred             CCCEEEeCCEEEEEEecC---CeEEEEEC-CcEEEcCEEEECCCCcccC
Confidence            367899999999986532   56777765 4479999999999985543

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=90.18  E-value=0.33  Score=43.90  Aligned_cols=31  Identities=13%  Similarity=0.290  Sum_probs=28.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|.+|.+.  +.+|+|+++.
T Consensus         7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~   39 (494)
T PRK05257          7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERL   39 (494)
T ss_pred             eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            599999999999999999985  6799999985

>PLN02661 Putative thiazole synthesis

Probab=90.14  E-value=0.33  Score=41.85  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCCCCCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeec
Q psy810          112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHI  150 (227)
Q Consensus       112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~  150 (227)
                      +..++..-.|+|||+|.+|+-+|..+++. +.+|+++++.
T Consensus        86 ~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~  125 (357)
T PLN02661         86 DMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS  125 (357)
T ss_pred             hhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence            33444456799999999999999999875 7899999885

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.12  E-value=0.4  Score=37.97  Aligned_cols=36  Identities=17%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      .+..++|+|+|.|..|.++|..|++.|. +++++.+.
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3456899999999999999999999987 69999874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.11  E-value=0.48  Score=41.80  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|++|+|+|.|.+|.-+|..+...|.+|+++.+.+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            468999999999999999999999999999887643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=90.11  E-value=0.35  Score=43.81  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=28.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~  150 (227)
                      -.|+|||||.+|+-+|..|++.+  .+|+|+++.
T Consensus        46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~   79 (497)
T PTZ00383         46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR   79 (497)
T ss_pred             ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence            46999999999999999999863  589999885

>TIGR02730 carot_isom carotene isomerase

Probab=90.07  E-value=0.37  Score=43.45  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus         2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~   33 (493)
T TIGR02730         2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYL   33 (493)
T ss_pred             cEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence            38999999999999999999999999999853

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG0685|consensus

Probab=90.00  E-value=0.52  Score=41.92  Aligned_cols=35  Identities=14%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      ...+|+|||+|.+|+-.|..|.+. ..+|++++.++
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d   55 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD   55 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence            345899999999999999999965 56888888743

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=89.93  E-value=0.52  Score=36.08  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.+|+|+|+|.+|...+..+..+|.+|+.+....
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            456899999999999999999999999999997743

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.92  E-value=0.54  Score=42.11  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+.|++|+|+|.|.+|..+|..+..+|.+|+++++.
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d  286 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEID  286 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567999999999999999999999999999988764

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=89.91  E-value=0.38  Score=40.07  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             EEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      ++|||+|..|.=+|..|++.+ .+|.|+++++.
T Consensus         3 ~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    3 YIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence            789999999999999999986 58999999653

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=89.85  E-value=0.39  Score=43.14  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .++|||+|+.|...|..+++.|.+|.++.+
T Consensus         6 DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          6 DVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            599999999999999999999999999997

>PRK07121 hypothetical protein; Validated

Probab=89.79  E-value=0.42  Score=43.12  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=29.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus        21 ~DVvVVGaG~AGl~AA~~aae~G~~VillEK~   52 (492)
T PRK07121         21 ADVVVVGFGAAGACAAIEAAAAGARVLVLERA   52 (492)
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35999999999999999999999999999864

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=89.73  E-value=0.57  Score=39.02  Aligned_cols=38  Identities=8%  Similarity=0.308  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      ...+++++|+|+|-+|--++..|...+ .+|+++.|...
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~  158 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVE  158 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            456789999999999999999999888 89999999543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=89.66  E-value=0.65  Score=34.60  Aligned_cols=36  Identities=14%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ..+++++|+|+|.+|..++..+.+.+ .+|+++.|..
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            45789999999999999999999884 7899998743

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.58  E-value=0.53  Score=40.99  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEE-cCCccEEe----CC-ceEEcCCCE---EeccEEE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQ-KPDIKRLL----QD-SVVFQDDTS---HPFDSII  190 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~-~~~i~~~~----~~-~v~~~~g~~---i~~D~vi  190 (227)
                      ++.|+|.|+.|+-.+..|++.|.+|+.+.-...++...-.....+ .+.++++-    .+ .+.++....   -.+|.++
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f   81 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF   81 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence            689999999999999999999999999977443322111111111 12233331    12 266654432   3799999


Q ss_pred             Ecccccccc
Q psy810          191 YCTGAYKYS  199 (227)
Q Consensus       191 ~atG~~~~~  199 (227)
                      +|+| .-++
T Consensus        82 Iavg-TP~~   89 (414)
T COG1004          82 IAVG-TPPD   89 (414)
T ss_pred             EEcC-CCCC
Confidence            9999 6555

>PRK13243 glyoxylate reductase; Reviewed

Probab=89.56  E-value=0.6  Score=40.04  Aligned_cols=37  Identities=14%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..|++|.|||-|.+|-.+|..+..+|-+|..+.|.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  182 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRT  182 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4567999999999999999999999999999888763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.43  E-value=0.49  Score=40.22  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.|+|+|.+|.-+|..|.+.+.+|+++.|..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            58999999999999999999999999999843

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.41  E-value=0.87  Score=39.21  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec---------------------CccccccCCC-----ceEEc--CCccEE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI---------------------SVAFKHQIGD-----SVVQK--PDIKRL  171 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~---------------------~~~~~~~~~~-----~i~~~--~~i~~~  171 (227)
                      .|+|||||+.|.-.|.+.++.|.+-=++..+                     .+.+...+..     .|.+.  -+..++
T Consensus       213 DVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l  292 (520)
T COG3634         213 DVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKL  292 (520)
T ss_pred             eEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcc
Confidence            5999999999999999999877554333211                     0011001111     11110  012222


Q ss_pred             eC----C---ceEEcCCCEEeccEEEEcccc
Q psy810          172 LQ----D---SVVFQDDTSHPFDSIIYCTGA  195 (227)
Q Consensus       172 ~~----~---~v~~~~g~~i~~D~vi~atG~  195 (227)
                      ..    +   .|++.+|..+.+-.+|++||+
T Consensus       293 ~~a~~~~~l~ev~l~nGavLkaktvIlstGA  323 (520)
T COG3634         293 EPAAVEGGLIEVELANGAVLKARTVILATGA  323 (520)
T ss_pred             eecCCCCccEEEEecCCceeccceEEEecCc
Confidence            22    2   388999999999999999993

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=89.40  E-value=0.65  Score=39.75  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ....+++|.|||.|.+|..+|..|...|.+|+.+.+.
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~  178 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY  178 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            3567899999999999999999999999999999874

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.39  E-value=0.43  Score=42.69  Aligned_cols=75  Identities=20%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             CCCCeEEEEccCccHHH-HHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---EE-eccEEE
Q psy810          116 FRDQNVLLVGFGPSGVD-IAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---SH-PFDSII  190 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e-~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~i-~~D~vi  190 (227)
                      .+++++.|+|.|-+|+- +|..|.+.|.+|++........             ...+...++.+..|.   .+ .+|.||
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~-------------~~~l~~~gi~~~~~~~~~~~~~~d~vv   71 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAV-------------TQRLLELGAIIFIGHDAENIKDADVVV   71 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChH-------------HHHHHHCCCEEeCCCCHHHCCCCCEEE
Confidence            35678999999999999 7999999999999887632210             001111122221111   12 489999


Q ss_pred             EccccccccccccccC
Q psy810          191 YCTGAYKYSYKLTFLA  206 (227)
Q Consensus       191 ~atG~~~~~~~~~~l~  206 (227)
                      ...| ..++.  +++.
T Consensus        72 ~spg-i~~~~--~~~~   84 (461)
T PRK00421         72 YSSA-IPDDN--PELV   84 (461)
T ss_pred             ECCC-CCCCC--HHHH
Confidence            9999 98887  6553

>TIGR00275 flavoprotein, HI0933 family

Probab=89.39  E-value=0.3  Score=42.87  Aligned_cols=30  Identities=20%  Similarity=0.362  Sum_probs=27.4

Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|||+|++|+-+|..+++.+.+|+|+++.+
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~   30 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK   30 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence            589999999999999999999999998753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=89.38  E-value=0.55  Score=41.51  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+|+|+|+|.+|+-.|.+|.+.|.+|++++.++
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~   40 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD   40 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccC
Confidence            35689999999999999999999999999998754

>PRK08401 L-aspartate oxidase; Provisional

Probab=89.36  E-value=0.47  Score=42.57  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-.|..+++.|.+|.|++..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~   33 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG   33 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36999999999999999999999999999774

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.30  E-value=0.6  Score=41.12  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            568999999999999999999999999999987643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=89.27  E-value=0.4  Score=43.51  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      -++|.|||+|.+|..+|..+++.|.+|+++.+....
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            467999999999999999999999999999886443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=89.26  E-value=0.73  Score=31.39  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=27.7

Q ss_pred             eEEEEccCccHHHHHHHHHhcc---CeEEEE-eecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLS-HHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli-~~~~  151 (227)
                      ++.|||+|.+|.-++..|.+.+   .+|+++ .|++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            5889999999999999999988   899977 5543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=89.23  E-value=0.48  Score=45.29  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      +|+|||||.+|+=+|..|.+.  |.+|+|+++..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~   35 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR   35 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            699999999999999999988  78999999854

>PRK06847 hypothetical protein; Provisional

Probab=89.22  E-value=0.93  Score=39.01  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=35.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.+++..+   +.+.+.+.+++.+.+|.||.|+|.++
T Consensus       120 ~gv~v~~~~~v~~i~~~~---~~~~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        120 AGADVRLGTTVTAIEQDD---DGVTVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             hCCEEEeCCEEEEEEEcC---CEEEEEEcCCCEEEcCEEEECcCCCc
Confidence            356899999999987533   55777777778899999999999954

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=89.13  E-value=0.81  Score=38.53  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~  150 (227)
                      .++.||+++|||.+. .|.=+|+.|.+.    +..||+.+++
T Consensus       157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~  198 (297)
T PRK14168        157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR  198 (297)
T ss_pred             CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC
Confidence            356799999999766 567788888877    6889999874

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=88.99  E-value=0.61  Score=41.26  Aligned_cols=37  Identities=16%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      ..+++++|+|+|.+|..++..|...| .+|+++.|...
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~  215 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE  215 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            56789999999999999999999887 78999988543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.96  E-value=0.58  Score=39.48  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|.|||.|.+|..+|..+++.|.+|+++.+..
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            679999999999999999999899999998744

>PRK09620 hypothetical protein; Provisional

Probab=88.96  E-value=0.74  Score=37.30  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             CCCeEEEEcc-----------------CccHHHHHHHHHhccCeEEEEee
Q psy810          117 RDQNVLLVGF-----------------GPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       117 ~~~~v~VvGg-----------------G~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|++|+|-+|                 |.+|..+|..|...|.+|+++++
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g   51 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG   51 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            4677777765                 89999999999999999999986

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.94  E-value=0.91  Score=38.23  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.    +..||+.|++.
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T  195 (297)
T PRK14167        154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT  195 (297)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC
Confidence            56799999999766 577788888876    67899987743

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.92  E-value=0.91  Score=37.97  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHh--ccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEK--VAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~--~~~~Vtli~~~  150 (227)
                      ++.||+++|||.+. .|.=+|..|.+  .+..||+.+++
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~  193 (284)
T PRK14193        155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG  193 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC
Confidence            56799999999765 67778988887  67889999874

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=88.87  E-value=0.8  Score=39.19  Aligned_cols=41  Identities=15%  Similarity=0.307  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          110 YRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       110 ~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -++...+.+++|.|||.|.+|.-+|..|...|.+|.+..+.
T Consensus         9 d~~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~   49 (330)
T PRK05479          9 DADLSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLRE   49 (330)
T ss_pred             CCChhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECC
Confidence            34445667899999999999999999999989888877663

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=88.81  E-value=0.83  Score=39.30  Aligned_cols=42  Identities=7%  Similarity=-0.132  Sum_probs=28.8

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecC-----CeeEEEcCEEEEccCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANE-----EITLHYNLLQSLPSSH   85 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~-----~~~~~~~~~vilAtG~   85 (227)
                      .+.++.+++|.+++..++  +.+.+...     ....+.+|+||+|||-
T Consensus       293 ~~~l~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  293 RLRLLPNTEVTSAEQDGD--GGVRLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             -SEEETTEEEEEEEEES---SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred             CeEEeCCCEEEEEEECCC--CEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence            467888999999987653  47777543     3578999999999995

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=88.71  E-value=0.52  Score=42.74  Aligned_cols=32  Identities=19%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+=.|..+++.|.+|.|+++.
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~   93 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKM   93 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            35999999999999999999999999999874

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=88.49  E-value=1.2  Score=41.77  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ++.++++++|.++...+   +.|.+.++++..+.+|.||+|+|.+.
T Consensus       421 Gv~i~~~~~V~~i~~~~---~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        421 QLTIHFGHEVARLERED---DGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             CcEEEeCCEeeEEEEeC---CEEEEEECCCcEEECCEEEECCCCCc
Confidence            46888899999987533   56888888887788999999999965

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=88.49  E-value=0.83  Score=39.32  Aligned_cols=40  Identities=13%  Similarity=-0.012  Sum_probs=33.2

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+|+++++|.+|+..+   ++..+...+++.+.||+||+|+..
T Consensus       224 ~~i~l~~~V~~I~~~~---~~v~v~~~~g~~~~ad~VI~a~p~  263 (450)
T PF01593_consen  224 GEIRLNTPVTRIERED---GGVTVTTEDGETIEADAVISAVPP  263 (450)
T ss_dssp             GGEESSEEEEEEEEES---SEEEEEETTSSEEEESEEEE-S-H
T ss_pred             ceeecCCcceeccccc---cccccccccceEEecceeeecCch
Confidence            4799999999999755   677888888889999999999987

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.48  E-value=0.66  Score=36.72  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      ..+..++|+|+|.|..|.++|..|.+.|. +++++.+.
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            34567899999999999999999999975 89999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=88.47  E-value=0.59  Score=33.29  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      |+|+|+|.|.++++++..+.++|.++.++...++.
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~   37 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT   37 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence            68999999999999999999999988888774443

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=88.47  E-value=1  Score=37.82  Aligned_cols=37  Identities=16%  Similarity=0.158  Sum_probs=29.6

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhc----cCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKV----AKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~----~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+.    +..||+.|.+.
T Consensus       154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T  195 (293)
T PRK14185        154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS  195 (293)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC
Confidence            56799999999766 567788888876    57899998743

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=88.42  E-value=0.74  Score=35.00  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=28.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.+||-|.+|..+|..|.+.|.+|+++.|...
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            4799999999999999999999999999988543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.33  E-value=0.51  Score=39.26  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||.|.+|..+|..+++.|.+|+++.+.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            5799999999999999999999999999987443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.19  E-value=0.93  Score=36.35  Aligned_cols=37  Identities=14%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +.+++++|.|+ |.+|.+++..|.+.|.+|+++.|...
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45788999985 88999999999999999999998543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.18  E-value=0.66  Score=39.86  Aligned_cols=36  Identities=22%  Similarity=0.376  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      .+..++|+|||.|..|.++|..|++.|. +++++.+.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4557899999999999999999999985 89999883

>PLN02928 oxidoreductase family protein

Probab=88.12  E-value=0.86  Score=39.33  Aligned_cols=37  Identities=16%  Similarity=0.489  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ....|+++.|+|-|.+|-++|..+..+|-+|+.+.|.
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            3567899999999999999999999999999988763

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.11  E-value=0.81  Score=39.83  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|+|+|.+|..++..+..+|.+|+++.++.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            356789999999999999999999999999998854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=88.11  E-value=1.2  Score=39.69  Aligned_cols=35  Identities=14%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ...+++|+|.|.|++|..+|..|.+.|.+|.-+..
T Consensus       229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            45689999999999999999999999988887743

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=87.97  E-value=0.96  Score=36.70  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=33.8

Q ss_pred             CCCCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          112 VPDPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       112 ~~~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +.+..+.++++|.|+ |.+|..++..|.+.+.+|+.+.|...
T Consensus        11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~   52 (251)
T PLN00141         11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD   52 (251)
T ss_pred             ccccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            444556789999995 99999999999999999998888543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=87.89  E-value=0.73  Score=38.93  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|.|+|.|.+|.-+|..|.+.+.+|+++.|..
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999998853

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=87.85  E-value=0.66  Score=41.11  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~  150 (227)
                      .|+|||||-+|+-+|..|+++.  .+|+|+++.
T Consensus         5 DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~   37 (429)
T COG0579           5 DVVIIGGGIMGAATAYELSEYEPDLSVALLEKE   37 (429)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc
Confidence            5999999999999999999997  899999885

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=87.82  E-value=0.58  Score=43.00  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=27.7

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus         2 VlVVG~G~AGl~AA~~aae~G~~V~lleK~   31 (566)
T TIGR01812         2 VVIVGAGLAGLRAAVEAAKAGLNTAVISKV   31 (566)
T ss_pred             EEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            899999999999999999999999999763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=87.82  E-value=1.3  Score=40.10  Aligned_cols=44  Identities=7%  Similarity=0.053  Sum_probs=33.6

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEe---cCCe--eEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFA---NEEI--TLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~---~~~~--~~~~~~~vilAtG~~~   87 (227)
                      ++.++++++|.+++..++  +.|.+.   +..+  ..+.+|+||+|.|+|.
T Consensus       199 Gv~i~~~~~V~~I~~~~d--~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        199 NAQVKYNHEVVDLERLSD--GGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             CcEEEeCCEEEEEEECCC--CCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            578899999999876422  568775   3444  2689999999999966

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=87.74  E-value=0.72  Score=39.35  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|.|||.|.+|.-+|..|.+.|.+|+++.|.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            36999999999999999999999999999984

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=87.74  E-value=1.3  Score=39.64  Aligned_cols=43  Identities=9%  Similarity=-0.089  Sum_probs=34.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSV   88 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~   88 (227)
                      .++.++.++.|..++. .   +.+.+.+.++ .+.+|+||+|||++..
T Consensus       196 ~Gv~i~~~t~V~~i~~-~---~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       196 LGVEIHENTPMTGLEE-G---QPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             cCCEEECCCeEEEEee-C---CceEEEeCCc-EEECCEEEEccccccc
Confidence            3678888999998874 1   4577888877 5999999999998653

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=87.54  E-value=0.71  Score=41.96  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+| +|+-.|..+++.|.+|.|+++.
T Consensus         9 DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~   38 (513)
T PRK12837          9 DVLVAGSG-GGVAGAYTAAREGLSVALVEAT   38 (513)
T ss_pred             CEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence            59999999 9999999999999999999864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=87.53  E-value=1  Score=42.18  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      -.|+|||+|.+|+-.|..+++.|.+|.|++.
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK   66 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY   66 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence            3699999999999999999998999999974

>PRK07774 short chain dehydrogenase; Provisional

Probab=87.51  E-value=1.2  Score=35.86  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+++++|.|+ |.+|..++..|.+.|.+|.++.|..
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35688999987 9999999999999999999998843

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.44  E-value=1  Score=39.44  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=32.9

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .....+++|.|||.|.+|-.+|..+..+|-+|..+.+
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp  147 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP  147 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            3456789999999999999999999999999988865

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.38  E-value=0.9  Score=36.70  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC---eEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK---NVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~---~Vtli~~~  150 (227)
                      .+.+++++|+|+|.+|.-+|..|.+.|.   +|+++.|.
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            4567899999999999999999988864   69999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.37  E-value=0.8  Score=39.00  Aligned_cols=34  Identities=21%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|+|.|.+|.-+|..|.+.|.+|+++.|...
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3699999999999999999999999999999543

>PRK14031 glutamate dehydrogenase; Provisional

Probab=87.34  E-value=1  Score=40.13  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.+++|+|.|.|+.|...|..|.+.|.+|+.++.
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            56789999999999999999999999999988655

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=87.33  E-value=0.78  Score=41.69  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999988544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=87.31  E-value=0.86  Score=38.63  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=30.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      ..+++|+|+|+|.+|..++..+... +.+|+++.|..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4578999999999999999999875 46899998854

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG4716|consensus

Probab=87.27  E-value=4.7  Score=34.76  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .++|||||.-|+-+|.+.+.+|++|.++.-
T Consensus        21 DLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   21 DLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            489999999999999999999999988854

>KOG0405|consensus

Probab=87.26  E-value=5.4  Score=34.53  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ..+|||||.=|+-.|...+..|.+|-|++.
T Consensus        22 DylvIGgGSGGvasARrAa~~GAkv~l~E~   51 (478)
T KOG0405|consen   22 DYLVIGGGSGGVASARRAASHGAKVALCEL   51 (478)
T ss_pred             ceEEEcCCcchhHHhHHHHhcCceEEEEec
Confidence            488999999999999999999999988876

>PLN02494 adenosylhomocysteinase

Probab=87.22  E-value=1  Score=40.35  Aligned_cols=36  Identities=14%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|++|+|+|.|.+|..+|..+..+|.+|+++.+.+
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999999999999999999999987743

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=87.21  E-value=0.89  Score=33.61  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=27.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      +|+|+|.|..|.++|..|.+.|. +++++...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999975 79999763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=87.15  E-value=1.1  Score=38.15  Aligned_cols=36  Identities=14%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+++|.|+|-|.+|-++|..+..+|-+|+.+.+.
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~  168 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRS  168 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999999999999999999999988763

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=86.94  E-value=1.6  Score=38.11  Aligned_cols=43  Identities=9%  Similarity=-0.053  Sum_probs=33.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .++.++++++|.++...+   +.+.+.+.++ .+.+|.||+|+|.+.
T Consensus       162 ~Gv~i~~~~~V~~i~~~~---~~~~V~~~~g-~i~ad~vV~A~G~~s  204 (393)
T PRK11728        162 RGGEIRLGAEVTALDEHA---NGVVVRTTQG-EYEARTLINCAGLMS  204 (393)
T ss_pred             CCCEEEcCCEEEEEEecC---CeEEEEECCC-EEEeCEEEECCCcch
Confidence            356888899999987533   4577777776 699999999999854

>PRK06436 glycerate dehydrogenase; Provisional

Probab=86.93  E-value=1.1  Score=37.96  Aligned_cols=37  Identities=14%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ....+|++.|+|-|.+|.++|..+..+|-+|..+.|.
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~  154 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS  154 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4567999999999999999999988889999988774

>PLN02976 amine oxidase

Probab=86.91  E-value=1.1  Score=45.67  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++|+|||+|.+|+-+|..|.+.|.+|+++.++
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~  725 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR  725 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeec
Confidence            478999999999999999999999999999984

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=86.87  E-value=1.2  Score=38.08  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++++|.|+ |.+|..++..|.+.|.+|+.+.|..
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~   38 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDP   38 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence            4688999986 9999999999999999999888743

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=86.84  E-value=1.2  Score=39.39  Aligned_cols=44  Identities=9%  Similarity=-0.207  Sum_probs=30.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHN   86 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~   86 (227)
                      .+..+..+.+|.++...+.  ....+.+.++  ..+.+|++|||+|+|
T Consensus       276 ~Gg~il~g~~V~~i~~~~~--~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       276 LGGVMLPGDRVLRAEFEGN--RVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             CCCEEEECcEEEEEEeeCC--eEEEEEecCCccceEECCEEEEccCCC
Confidence            3456777889988775432  2233444443  479999999999997

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK09126 hypothetical protein; Provisional

Probab=86.80  E-value=1.6  Score=37.82  Aligned_cols=44  Identities=14%  Similarity=-0.030  Sum_probs=35.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.+++..+   +.+.+..++++.+.+|.||.|.|..+
T Consensus       124 ~g~~i~~~~~v~~~~~~~---~~~~v~~~~g~~~~a~~vI~AdG~~S  167 (392)
T PRK09126        124 DGIELLTGTRVTAVRTDD---DGAQVTLANGRRLTARLLVAADSRFS  167 (392)
T ss_pred             CCcEEEcCCeEEEEEEcC---CeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence            367899999999987533   45777777777899999999999843

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.79  E-value=0.72  Score=43.03  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=28.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus        10 DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803         10 DVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5999999999999999999999999999774

>KOG1800|consensus

Probab=86.72  E-value=1  Score=39.15  Aligned_cols=35  Identities=31%  Similarity=0.459  Sum_probs=30.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF  154 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~  154 (227)
                      +|.|||+|++|.-.|..|.+.  +.+|+++++.+..+
T Consensus        22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            899999999999999999885  57899999865443

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.71  E-value=0.75  Score=42.60  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=28.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-.|..+++.|.+|+|++..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            35999999999999999999889999999874

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=86.68  E-value=0.86  Score=41.77  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-.|..+++.|.+|.|+++.+
T Consensus         6 DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          6 DVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            59999999999999999999999999998743

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=86.66  E-value=0.83  Score=42.14  Aligned_cols=32  Identities=25%  Similarity=0.448  Sum_probs=29.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus        10 ~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~   41 (574)
T PRK12842         10 CDVLVIGSGAGGLSAAITARKLGLDVVVLEKE   41 (574)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCeEEEEecC
Confidence            35999999999999999999999999999874

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=86.60  E-value=1.1  Score=31.52  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      |+|+|.|..|.+++..|.+.+.+|+++.+...
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999997668999998443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=86.58  E-value=1.5  Score=38.93  Aligned_cols=45  Identities=11%  Similarity=0.011  Sum_probs=36.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeE-EEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITL-HYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~-~~~~~vilAtG~~~   87 (227)
                      .+..+++|++|..|++.++  +.+.+.+.+++. ++++.||.|.|...
T Consensus       166 ~g~~i~ln~eV~~i~~~~d--g~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         166 NGVELRLNTEVTGIEKQSD--GVFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             cCCEEEecCeeeEEEEeCC--ceEEEEecCCcEEEEeeEEEECCchhH
Confidence            4779999999999998664  367777777755 99999999999743

>PRK07804 L-aspartate oxidase; Provisional

Probab=86.52  E-value=0.81  Score=41.90  Aligned_cols=32  Identities=22%  Similarity=0.482  Sum_probs=28.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~   48 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKA   48 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEcc
Confidence            35999999999999999999989999999774

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=86.48  E-value=0.65  Score=43.14  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=27.5

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~   30 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYV   30 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEec
Confidence            689999999999999999999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=86.47  E-value=0.98  Score=38.84  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      .+...+|+|||.|..|.++|..|++.|. +++++.+.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4456899999999999999999999976 89999873

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.47  E-value=1.6  Score=38.05  Aligned_cols=43  Identities=9%  Similarity=-0.036  Sum_probs=35.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ++++++++++.+++..+   +.+.+...++..+.+|.||.|.|.++
T Consensus       126 gv~v~~~~~v~~i~~~~---~~v~v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        126 DIGLLANARLEQMRRSG---DDWLLTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             CCEEEcCCEEEEEEEcC---CeEEEEECCCCEEEeCEEEEecCCCc
Confidence            56788899999987533   56778777777899999999999955

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=86.47  E-value=1.3  Score=35.81  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             CCCCCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecC
Q psy810          111 RVPDPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       111 ~~~~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..++.+++++|.| +|.+|..+|..|.+.|.+|+++.|..
T Consensus         5 ~~~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213          5 LELFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             hhhhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            334445688999998 48899999999999999999998854

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=86.39  E-value=0.95  Score=40.98  Aligned_cols=34  Identities=15%  Similarity=0.005  Sum_probs=30.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5799999999999999999999999999988543

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=86.38  E-value=1.5  Score=37.30  Aligned_cols=36  Identities=17%  Similarity=0.080  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|.|+ |++|.+++..|.+.|.+|+++.|..
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~   40 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS   40 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence            45688999986 9999999999999999999987743

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=86.36  E-value=1.2  Score=36.54  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcc-----------CeEEEEee
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVA-----------KNVFLSHH  149 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~-----------~~Vtli~~  149 (227)
                      +..+|+|||.|..|.+++..|++.|           .+++++..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~   53 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDD   53 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECC
Confidence            4678999999999999999999863           28899876

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=86.33  E-value=1.2  Score=38.70  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+++|+|.|+ |++|..++..|.+.|.+|+.+.|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            4678999997 999999999999999999999874

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=86.24  E-value=1.4  Score=37.88  Aligned_cols=40  Identities=5%  Similarity=-0.076  Sum_probs=30.7

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      ++.++.+++|.+++.     +  .+.+.++ .+.+|+||+|+|.+...
T Consensus       160 Gv~i~~~t~V~~i~~-----~--~v~t~~g-~i~a~~VV~A~G~~s~~  199 (365)
T TIGR03364       160 GVEFHWNTAVTSVET-----G--TVRTSRG-DVHADQVFVCPGADFET  199 (365)
T ss_pred             CCEEEeCCeEEEEec-----C--eEEeCCC-cEEeCEEEECCCCChhh
Confidence            677888899998863     2  5666666 47899999999996543

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG2852|consensus

Probab=86.20  E-value=0.44  Score=39.89  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc------CeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~  150 (227)
                      -++++|||||-+|+-.|.+|.+..      ..||+++.+
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~   48 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK   48 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence            489999999999999999999875      579999875

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=86.19  E-value=1.7  Score=37.72  Aligned_cols=43  Identities=7%  Similarity=0.013  Sum_probs=34.7

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +++++++++|.++...+   +.+.+.+.++..+.+|.||.|+|.++
T Consensus       127 gv~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        127 GVQLHCPARVVALEQDA---DRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             CCEEEcCCeEEEEEecC---CeEEEEECCCCEEEeCEEEEecCCCc
Confidence            57888999999987533   56777777777899999999999954

>KOG2820|consensus

Probab=86.16  E-value=1  Score=38.52  Aligned_cols=53  Identities=6%  Similarity=-0.079  Sum_probs=42.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPS   93 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~   93 (227)
                      .+..++.+..|..+...+.......|.|.++..+.++++|+++|+|-...+|.
T Consensus       166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~  218 (399)
T KOG2820|consen  166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPT  218 (399)
T ss_pred             cCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCc
Confidence            45677888888888766655667788888888899999999999977666664

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.09  E-value=1.3  Score=37.01  Aligned_cols=36  Identities=8%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ..+++++|+|+|-+|--++..|...| .+|+++.|..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            45789999999999999999999886 5799999854

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=86.09  E-value=0.88  Score=42.31  Aligned_cols=31  Identities=19%  Similarity=0.424  Sum_probs=28.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.  |.+|.|+++.
T Consensus        13 DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         13 DILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             CEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            599999999999999999987  8899999864

>PRK06057 short chain dehydrogenase; Provisional

Probab=86.09  E-value=1.4  Score=35.71  Aligned_cols=37  Identities=11%  Similarity=0.106  Sum_probs=31.9

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +.+++++|+|+ |.+|..++..|.+.|.+|.++.|...
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            45789999987 89999999999999999999988543

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=86.09  E-value=1.6  Score=36.51  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHh----ccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEK----VAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~----~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|+.|.+    .+..||+.+.+.
T Consensus       154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t  195 (286)
T PRK14184        154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT  195 (286)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc
Confidence            56799999999776 56779998988    778899988743

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=85.95  E-value=1.2  Score=38.08  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..++|+|.|| |++|..++..|.+.+.+|+.+.|.
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45689999996 999999999999999999998774

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=85.95  E-value=1.7  Score=37.36  Aligned_cols=43  Identities=9%  Similarity=-0.053  Sum_probs=33.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .++.++.+++|.++...+   +.+.+.+.++ .+.+|+||+|+|.+.
T Consensus       158 ~g~~~~~~~~V~~i~~~~---~~~~v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       158 HGATVRDGTKVVEIEPTE---LLVTVKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             cCCEEECCCeEEEEEecC---CeEEEEeCCC-EEEeCEEEEecCcch
Confidence            356788889999987532   5577777666 699999999999854

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=85.88  E-value=1.5  Score=38.98  Aligned_cols=40  Identities=5%  Similarity=-0.015  Sum_probs=33.2

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+|+++++|.+|+..+   +.|.+++++++.+.||+||+|+-.
T Consensus       238 ~~i~~~~~V~~I~~~~---~~~~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRG---SNYTLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             CeEEcCCeEEEEEecC---CcEEEEECCCcEEEcCEEEECCCH
Confidence            4699999999998633   568888877778999999999986

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=85.87  E-value=1.1  Score=36.19  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~  149 (227)
                      .+..++|+|+|.|..|.++|..|++.|. +++++..
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~   53 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD   53 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4457899999999999999999999865 7888866

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
2xvi_A	464	Crystal Structure Of The Mutant Bacterial Flavin Co		4e-13
2vq7_A	461	Bacterial Flavin-Containing Monooxygenase In Comple		6e-13
2xlp_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		6e-13
2xve_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		6e-13
2xls_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		6e-13
2xlr_A	461	Joint-Functions Of Protein Residues And Nadp(H) In		6e-13
2xvf_A	464	Crystal Structure Of Bacterial Flavin-Containing Mo		9e-13
4a9w_A	357	Flavin-Containing Monooxygenase From Stenotrophomon		8e-08
1vqw_A	457	Crystal Structure Of A Protein With Similarity To F		1e-04
2gv8_A	447	Crystal Structure Of Flavin-Containing Monooxygenas		1e-04

>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing Monooxygenase (Y207s) Length = 464

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273

>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With Nadp: Native Data Length = 461

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278

>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen- Activation By Flavin-Containing Monooxygenase: Asn78ser Mutant Length = 461

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278

>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273

>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78lys Mutant Length = 461

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278

>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-Activation By Flavin-Containing Monooxygenase: Asn78asp Mutant Length = 461

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 167 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 226
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 227 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 278

>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing Monooxygenase Length = 464

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221
Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG
Sbjct: 222 KKLISCYRTAPXGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG 273

>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas Maltophilia Length = 357

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 43/146 (29%)
Query: 92  PSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH-- 149
           P Y+G + F G+Q+HS  Y  P PF    V ++G G SG  I  ++  VA+  +++ H  
Sbjct: 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196
Query: 150 ---------------ISVAFKHQ------------IGDSVVQKPDI-------------- 168
                           +  +K Q             GD V+  P +              
Sbjct: 197 AFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPP 256
Query: 169 KRLLQDSVVFQDDTSHPFDSIIYCTG 194
            R     + + D T   FD++I+CTG
Sbjct: 257 ARFSPTGMQWADGTERAFDAVIWCTG 282

>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin- Containing Monooxygenases And To Mammalian Dimethylalanine Monooxygenases Length = 457

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 80  SLPSSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAM 135
           S+ + H  VP IP+ +G D +     G  +HS  +R P+ F  ++VL+VG   S  D+  
Sbjct: 172 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 231
Query: 136 DIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRL--------LQDSVVFQDDTSHPFD 187
            +  VAK+      +         +S+ Q P+I +         L+   V  +      D
Sbjct: 232 HLTPVAKHPIYQSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSN-----ID 284
Query: 188 SIIYCTGAYKYSYKLTFLATFSISMAMSTPDG 219
            +IYCTG Y YS     LA           DG
Sbjct: 285 RVIYCTG-YLYSVPFPSLAKLKSPETKLIDDG 315

>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo) From S.Pombe And Nadph Cofactor Complex Length = 447

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 80  SLPSSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAM 135
           S+ + H  VP IP+ +G D +     G  +HS  +R P+ F  ++VL+VG   S  D+  
Sbjct: 170 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 229
Query: 136 DIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRL--------LQDSVVFQDDTSHPFD 187
            +  VAK+      +         +S+ Q P+I +         L+   V  +      D
Sbjct: 230 HLTPVAKHPIYQSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSN-----ID 282
Query: 188 SIIYCTGAYKYSYKLTFLATFSISMAMSTPDG 219
            +IYCTG Y YS     LA           DG
Sbjct: 283 RVIYCTG-YLYSVPFPSLAKLKSPETKLIDDG 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	2e-30
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	1e-29
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	4e-29
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	7e-12
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	2e-08
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-08
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	3e-06
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	4e-06
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	5e-04

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score =  115 bits (290), Expect = 2e-30
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 12/130 (9%)

Query: 83  SSHNSVPNIPSYEGADLFR----GLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE 138
           + H  VP IP+ +G D +     G  +HS  +R P+ F  ++VL+VG   S  D+   + 
Sbjct: 173 NGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232

Query: 139 KVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQD-SVVFQDDTSHP--FDSIIYCTGA 195
            VAK+      +         +S+ Q P+I +       ++          D +IYCTG 
Sbjct: 233 PVAKHPIYQSLLGGGDIQ--NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTG- 289

Query: 196 YKYSYKLTFL 205
             Y Y + F 
Sbjct: 290 --YLYSVPFP 297

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score =  113 bits (284), Expect = 1e-29
 Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 83  SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           + H S P +P +EG + F G  +H+HD+R    F+D+ VLLVG   S  DI     K   
Sbjct: 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGA 221

Query: 143 NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKL 202
              +S + +    ++  ++  ++P++ R+  ++  F D +S   D+II CTG   Y +  
Sbjct: 222 KKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG---YIHHF 278

Query: 203 TFL 205
            FL
Sbjct: 279 PFL 281

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score =  110 bits (278), Expect = 4e-29
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 46/165 (27%)

Query: 85  HNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV 144
                  P Y+G + F G+Q+HS  Y  P PF    V ++G G SG  I  ++  VA+  
Sbjct: 130 TWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETT 189

Query: 145 FLS----HHI-----------------------------SVAFKHQIGDS---------- 161
           +++      +                                F   +             
Sbjct: 190 WITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV 249

Query: 162 VVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA 206
           +   P   R     + + D T   FD++I+CTG   +   L+ L 
Sbjct: 250 LAAVPPPARFSPTGMQWADGTERAFDAVIWCTG---FRPALSHLK 291

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 35/135 (25%)

Query: 87  SVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
           + P  P   G        +H  +    D F     +++G   SG D A  + K   ++ L
Sbjct: 143 NFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIAL 194

Query: 147 SHHISVAFKHQIGDSVVQKPDIKRLLQD--------------------------SVVFQD 180
               +         SV   P  ++ L +                           + F  
Sbjct: 195 YTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDS 254

Query: 181 DTSH-PFDSIIYCTG 194
             S       I  TG
Sbjct: 255 GQSVHTPHEPILATG 269

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
            P     E A+ + G  +H   Y V D   F  + V ++G G S VD A+ +E +AK V 
Sbjct: 125 KPRKLELENAEQYEGKNLH---YFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVS 181

Query: 146 LSH 148
           + H
Sbjct: 182 IIH 184

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVF 145
            P      G   F G  ++   Y V     F+ + VL+VG G S VD A+++   A+ + 
Sbjct: 123 EPRRIGAPGEREFEGRGVY---YAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRIT 179

Query: 146 LSH 148
           L H
Sbjct: 180 LIH 182

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 91  IPSYEGADLFRGLQMHSHDYRVPDP--FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH 148
           +P     D   G  ++   Y V     F+ + V++VG G S +D  + + K A +V L H
Sbjct: 137 LPQLGNIDHLTGSSVY---YAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVH 193

Query: 149 H 149
            
Sbjct: 194 R 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 42/270 (15%), Positives = 72/270 (26%), Gaps = 97/270 (35%)

Query: 9   PSVLTTYNSEALQPIRKLRES----QPTNFISI-----------AFIPCIEIK------F 47
             V   YN   LQP  KLR++    +P   + I           A   C+  K      F
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 48  GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIP--SYEGADLFRGLQM 105
              W  ++  + P   L        L Y +  +  S  +   NI    +      R L +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-L 238

Query: 106 HSHDY-------------RVPDPF----------RDQNVLLVGFGPSGVDIAMDIEKV-- 140
            S  Y             +  + F          R + V       +   I++D   +  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 141 ----AKNVF----------LSH--------HISV---------------------AFKHQ 157
                K++           L           +S+                          
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 158 IGDSV-VQKP-DIKRLLQDSVVFQDDTSHP 185
           I  S+ V +P + +++     VF      P
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 87  SVPNIPSYEGADLFRGLQMHSHDY------RVPDPFRDQNVLLVGFGPSGVDIAMDI 137
             P IP    A    G   H   Y      +     +   + ++G G S  +  +D+
Sbjct: 190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDL 246

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 45.6 bits (109), Expect = 4e-06
 Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 8/79 (10%)

Query: 116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS------VAFKHQIGDSVVQKPDIK 169
                + ++   P  +  A+ +    +  F ++ I        A     G  V     I+
Sbjct: 139 LDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTR-IR 197

Query: 170 RLL-QDSVVFQDDTSHPFD 187
            +     VV  D  S    
Sbjct: 198 EIAGHADVVLADGRSIALA 216

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 87  SVPNIPSYEGADLFRGLQMHS----HDYRVPDP---FRDQNVLLVGFGPSGVDIAMDIEK 139
           S   +P  +G D F+G   HS     D         F  + V ++G G +GV I     +
Sbjct: 147 SASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAE 206

Query: 140 VAKN--VF 145
            AK   VF
Sbjct: 207 TAKELYVF 214

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 87  SVPNIPSYEGADLFRGLQMHS----HDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK 142
           S  N P+  G D F G  +H+               + V ++G G +G  +   +    +
Sbjct: 147 SAINFPNLPGLDTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTGQQVITSLAPEVE 202

Query: 143 N--VF 145
           +  VF
Sbjct: 203 HLTVF 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.93
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.89
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.89
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.89
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.88
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.86
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.84
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.82
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.82
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.82
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.81
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.81
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.81
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.81
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.81
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.81
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.8
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.8
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.8
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.8
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.8
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.8
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.8
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.8
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.79
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.79
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.79
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.79
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.79
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.78
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.78
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.78
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.77
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.77
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.77
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.77
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.77
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.77
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.77
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.77
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.77
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.77
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.77
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.76
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.76
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.76
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.76
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.76
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.76
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.76
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.76
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.75
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.75
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.75
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.75
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.75
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.75
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.74
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.74
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.74
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.74
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.74
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.73
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.73
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.73
4dna_A	463	Probable glutathione reductase; structural genomic	99.73
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.73
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.73
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.72
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.72
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.72
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.72
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.72
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.71
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.7
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.55
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.52
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.51
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.49
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.42
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.41
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.38
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.38
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.34
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.28
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.25
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.21
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.13
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.12
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.11
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.8
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.5
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.45
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.4
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.31
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.31
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.3
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.29
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.26
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.22
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.22
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.2
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.15
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.01
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.99
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.99
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.96
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.96
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.93
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.91
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.9
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.9
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.9
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.85
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.84
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.83
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.83
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.83
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.82
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.81
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.8
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.75
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.75
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.74
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.73
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.72
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.71
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.71
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.69
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.67
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.66
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.64
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.64
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.61
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.61
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.6
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.6
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.6
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.56
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.52
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.52
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.52
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.51
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.5
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.49
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.47
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.46
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.44
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.42
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.38
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.38
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.37
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.36
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.36
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.35
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.35
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.33
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.32
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.32
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.31
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.31
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.29
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.26
4dna_A	463	Probable glutathione reductase; structural genomic	97.25
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.23
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.23
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.22
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.22
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.22
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.2
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.2
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.2
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.18
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.17
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.14
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.13
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.12
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.12
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.11
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.11
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.07
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.06
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.04
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.03
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.02
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.99
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.98
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.93
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	96.92
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.89
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.89
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	96.84
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.71
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.69
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.66
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.65
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.51
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	96.19
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.18
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	96.17
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.15
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	96.14
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.05
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.79
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.79
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.77
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.75
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.74
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.66
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.64
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.59
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	95.56
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.53
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.53
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	95.46
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	95.4
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.29
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	95.28
3dme_A	369	Conserved exported protein; structural genomics, P	95.21
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.17
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	95.09
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	95.09
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.08
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	95.08
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	95.07
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	95.03
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	95.02
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	95.01
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.0
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	94.95
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	94.88
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.88
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	94.84
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.83
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	94.82
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	94.81
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.79
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.78
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	94.74
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	94.69
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	94.68
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	94.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.64
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	94.56
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.51
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	94.47
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	94.45
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	94.44
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	94.41
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.37
3atr_A	453	Conserved archaeal protein; saturating double bond	94.36
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	94.33
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	94.28
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	94.27
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	94.25
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	94.24
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	94.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.17
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	94.15
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.11
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.1
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	94.1
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	94.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.08
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	94.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.99
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	93.99
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	93.97
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	93.95
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.88
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.83
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	93.82
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	93.82
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.82
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.78
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.78
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.77
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	93.74
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	93.72
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	93.72
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	93.72
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	93.7
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	93.7
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	93.7
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.69
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	93.65
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.64
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	93.6
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.59
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.57
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	93.53
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	93.43
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.41
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	93.32
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	93.3
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	93.3
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	93.29
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.19
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	93.19
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	93.19
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.19
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	93.16
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	93.1
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	93.09
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.09
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	93.06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	93.06
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.99
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	92.69
3dme_A	369	Conserved exported protein; structural genomics, P	92.61
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	92.5
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	92.45
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.42
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	92.32
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	92.21
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	92.18
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	92.08
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.01
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.94
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.93
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	91.91
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.89
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	91.8
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.75
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	91.75
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	91.64
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.63
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.61
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	91.6
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	91.55
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.54
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	91.53
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	91.41
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.4
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.35
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.34
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	91.31
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	91.29
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	91.27
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	91.24
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.2
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	91.18
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.12
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.06
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.05
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.99
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.99
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.9
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	90.84
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.8
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.77
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	90.72
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.7
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.67
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.65
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.63
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	90.62
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.61
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	90.48
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.46
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.46
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	90.46
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	90.45
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	90.45
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	90.45
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	90.41
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	90.35
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	90.33
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	90.3
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.17
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	90.16
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	90.14
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	90.13
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.1
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	90.05
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.04
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	90.02
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	90.01
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	89.96
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	89.91
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	89.89
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.83
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	89.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.81
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.8
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	89.76
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	89.71
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.69
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	89.64
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	89.62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.61
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	89.52
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	89.44
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	89.42
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	89.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.34
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	89.34
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	89.33
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.33
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	89.26
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	89.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.15
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	89.15
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	89.14
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	89.11
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.07
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	88.99
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.9
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.86
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.83
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	88.81
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	88.76
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	88.74
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	88.72
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.64
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.63
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	88.62
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.53
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	88.51
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	88.44
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	88.38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	88.38
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	88.33
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.29
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.29
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.27
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	88.15
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	88.12
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.11
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	88.07
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	88.06
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	88.01
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	88.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.96
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	87.95
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	87.89
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.86
2bry_A	497	NEDD9 interacting protein with calponin homology a	87.85
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.83
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	87.79
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	87.7
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	87.63
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	87.61
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	87.61
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.58
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	87.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	87.51
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	87.48
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.43
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	87.43
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	87.38
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.37
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	87.34
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	87.33
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	87.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.19
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	87.17
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	87.14
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	87.13
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	87.11
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.11
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	87.04
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	86.99
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	86.95
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	86.93
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	86.93
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	86.84
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	86.82
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	86.81
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	86.8
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.79
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	86.78
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	86.57
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	86.54
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	86.46
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	86.45
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	86.41
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	86.38
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	86.34
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	86.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	86.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	86.21
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	86.08
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	86.08
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	86.07
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.07
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	85.99
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	85.96
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	85.9

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.93  E-value=2.3e-25  Score=196.65  Aligned_cols=167  Identities=25%  Similarity=0.381  Sum_probs=144.9

Q ss_pred             EEeCceEEEEEEeeCCCCcEEEecCC---e--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           45 IKFGSSWAEIEKFSVPTKCLHFANEE---I--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        45 i~~~~~V~~i~~~~~~~~~~~v~~~~---~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      ++++++|.+++..+. .+.|.|.+.+   +  ..+.||+||+|||.++.|+.|++||.+.+.+..+|++.+++...+.++
T Consensus       120 i~~~~~V~~v~~~~~-~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k  198 (464)
T 2xve_A          120 IRFNTAVRHVEFNED-SQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDK  198 (464)
T ss_dssp             EECSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTS
T ss_pred             EEeCCEEEEEEEcCC-CCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCC
Confidence            889999999986432 2378887643   2  679999999999976699999999998888888999999888778899


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEcccccccc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                      +|+|||+|++|+|+|..|++.+++|+++++++..+...++.+|.+.+.|.++.+++|++.||+++++|.||+||| ++|+
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~~~~V~~~~~V~~i~~~~V~~~dG~~i~~D~Vi~atG-~~p~  277 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTG-YIHH  277 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCCCTTEEECSCEEEECSSEEEETTSCEEECSEEEECCC-BCCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCCCCceEEcCCeEEEeCCEEEECCCCEEeCCEEEECCC-CCCC
Confidence            999999999999999999999999999999766555556788988899999988899999999999999999999 9999


Q ss_pred             ccccccCC-cccccccC
Q psy810          200 YKLTFLAT-FSISMAMS  215 (227)
Q Consensus       200 ~~~~~l~~-~gl~~~~~  215 (227)
                      +  +||.+ .+++++.+
T Consensus       278 ~--~~l~~~~gl~~~~~  292 (464)
T 2xve_A          278 F--PFLNDDLRLVTNNR  292 (464)
T ss_dssp             C--TTBCTTTCCCCCSS
T ss_pred             C--CCcCcccccccCCC
Confidence            9  99986 67777654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.89  E-value=7.3e-23  Score=183.70  Aligned_cols=108  Identities=14%  Similarity=0.183  Sum_probs=97.2

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEE
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLL  123 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~V  123 (227)
                      +++++++|.+++. +.+...|.|.+.+++.+.||+||+|||.++.|..|++||.+.|.+..+|...+.+..+..+|+|+|
T Consensus       105 ~i~~~~~V~~i~~-~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~V  183 (540)
T 3gwf_A          105 HFKFGTEVTSALY-LDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGV  183 (540)
T ss_dssp             GEEESCCEEEEEE-ETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEE
T ss_pred             eeEeccEEEEEEE-eCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEE
Confidence            7889999999874 333458999998888899999999999777999999999998989999999998888888999999


Q ss_pred             EccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          124 VGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       124 vGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ||+|.+|+|+|..|++.+.+||++.|++.
T Consensus       184 IG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          184 IGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             ECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            99999999999999999999999999654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=1.8e-22  Score=170.53  Aligned_cols=163  Identities=22%  Similarity=0.382  Sum_probs=136.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEE-EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLH-FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~-v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .+++++++++|.+++..+   +.|. +.++++ .+.||+||+|||.+..|.+|++||.+.+.+..+|++.+.+...+.++
T Consensus        89 ~~~~~~~~~~v~~i~~~~---~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  164 (357)
T 4a9w_A           89 YALPVLRPIRVQRVSHFG---ERLRVVARDGR-QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGM  164 (357)
T ss_dssp             TTCCEECSCCEEEEEEET---TEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCSGGGTTS
T ss_pred             cCCEEEcCCEEEEEEECC---CcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCChhhcCCC
Confidence            356789999999998644   6788 988887 89999999999987688899999998888888999889888888899


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccC-----------------------------------------
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI-----------------------------------------  158 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~-----------------------------------------  158 (227)
                      +|+|||+|.+|+|+|..|.+.+ +|++++++.+.+....                                         
T Consensus       165 ~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
T 4a9w_A          165 RVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLD  243 (357)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBCCCHHHHH
T ss_pred             EEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHH
Confidence            9999999999999999999998 6999998643331100                                         


Q ss_pred             ---CCceEEcCCccEEeCCceEEcCCCEEeccEEEEccccccccccccccCCcccc
Q psy810          159 ---GDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSIS  211 (227)
Q Consensus       159 ---~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~  211 (227)
                         ...+.....+.++..+++.+.+|+++++|.||+|+| ++|++  +||+..+++
T Consensus       244 ~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G-~~p~~--~~l~~~gl~  296 (357)
T 4a9w_A          244 ARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTG-FRPAL--SHLKGLDLV  296 (357)
T ss_dssp             HHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCC-BCCCC--GGGTTTTCB
T ss_pred             HHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCC-cCCCC--cccCccccc
Confidence               011333456777888889999999999999999999 99999  999999888

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.89  E-value=6.6e-23  Score=179.91  Aligned_cols=158  Identities=28%  Similarity=0.395  Sum_probs=133.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCC---ee---EEEcCEEEEccCCCCCCCCCCCCCCCcc----cceeeecCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEE---IT---LHYNLLQSLPSSHNSVPNIPSYEGADLF----RGLQMHSHDYR  111 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~---~~---~~~~~~vilAtG~~~~p~~p~~~g~~~~----~~~~~~~~~~~  111 (227)
                      ...++++++|.++++.+   +.|.|.+.+   +.   .+.||+||+|||+++.|++|++||.+.+    .+.++|+..++
T Consensus       129 ~~~i~~~t~V~~v~~~~---~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~  205 (447)
T 2gv8_A          129 LPFIKLATDVLDIEKKD---GSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFR  205 (447)
T ss_dssp             GGGEECSEEEEEEEEET---TEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCC
T ss_pred             hCeEEeCCEEEEEEeCC---CeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccC
Confidence            34688999999998643   568887643   44   7999999999999888999999998654    45688888888


Q ss_pred             CCCCCCCCeEEEEccCccHHHHHHHHHhccCe-EEEEeecCccccccCCCceEEcCCccEEe--CCceEEcCCCE-Eecc
Q psy810          112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHISVAFKHQIGDSVVQKPDIKRLL--QDSVVFQDDTS-HPFD  187 (227)
Q Consensus       112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~~~~~~~~~~~i~~~~~i~~~~--~~~v~~~~g~~-i~~D  187 (227)
                      +...+.+++|+|||+|++|+|+|..|++.+++ ||+++|++..+   ...+|...+.|.++.  +++|++.||+. +++|
T Consensus       206 ~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~l---~~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D  282 (447)
T 2gv8_A          206 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI---QNESLQQVPEITKFDPTTREIYLKGGKVLSNID  282 (447)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC---BCSSEEEECCEEEEETTTTEEEETTTEEECCCS
T ss_pred             ChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCcC---CCCCeEEecCeEEEecCCCEEEECCCCEeccCC
Confidence            88888899999999999999999999999999 99999965432   345788888899995  45699999987 7999


Q ss_pred             EEEEccccccccccccc-----cCCc
Q psy810          188 SIIYCTGAYKYSYKLTF-----LATF  208 (227)
Q Consensus       188 ~vi~atG~~~~~~~~~~-----l~~~  208 (227)
                      .||+||| ++|++  +|     |++.
T Consensus       283 ~vi~atG-~~~~~--~~l~~~~l~~~  305 (447)
T 2gv8_A          283 RVIYCTG-YLYSV--PFPSLAKLKSP  305 (447)
T ss_dssp             EEEECCC-BCCCC--CCHHHHSCCST
T ss_pred             EEEECCC-CCcCC--CCCcccccccc
Confidence            9999999 99999  99     8865

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.88  E-value=4.4e-22  Score=178.97  Aligned_cols=107  Identities=18%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC-CCCCCCCCeEE
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR-VPDPFRDQNVL  122 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~  122 (227)
                      +++++++|.+++. +.+...|.|.+.+++.+.||+||+|||.++.|..|++||.+.+.+..+|...|. +..++.+|+|+
T Consensus       117 ~i~~~~~V~~i~~-~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~  195 (549)
T 4ap3_A          117 DIRFDTRVTSAVL-DEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVG  195 (549)
T ss_dssp             GEECSCCEEEEEE-ETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEE
T ss_pred             cEEECCEEEEEEE-cCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEE
Confidence            6889999999874 444468999999998899999999999555899999999998989999999888 57788899999


Q ss_pred             EEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          123 LVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       123 VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |||+|.+|+|+|..|++.+.+||++.|++
T Consensus       196 VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          196 VIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             EECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             EECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            99999999999999999999999999865

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.86  E-value=1.9e-22  Score=176.75  Aligned_cols=166  Identities=15%  Similarity=0.120  Sum_probs=124.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe---cCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC--CC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA---NEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP--DP  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~---~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~--~~  115 (227)
                      .+++++.+++|..|+...   ....+.   +.++..+.||+||||||+  +|+.|++||...+..+.+..+..++.  ..
T Consensus        70 ~~i~~~~~~~V~~id~~~---~~~~~~~~~~~~~~~~~yd~lVIATGs--~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~  144 (437)
T 4eqs_A           70 KQITVKTYHEVIAINDER---QTVSVLNRKTNEQFEESYDKLILSPGA--SANSLGFESDITFTLRNLEDTDAIDQFIKA  144 (437)
T ss_dssp             HCCEEEETEEEEEEETTT---TEEEEEETTTTEEEEEECSEEEECCCE--EECCCCCCCTTEECCSSHHHHHHHHHHHHH
T ss_pred             cCCEEEeCCeEEEEEccC---cEEEEEeccCCceEEEEcCEEEECCCC--ccccccccCceEEeeccHHHHHHHHHhhhc
Confidence            356778888998887422   333332   345678999999999999  88999999865433222221111110  11


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeCCceEEcC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQDSVVFQD  180 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~~~v~~~~  180 (227)
                      ..+++++|||||++|+|+|..+.+++.+||++++.+..+. .++               -++..+..+.+++++.+.+++
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~-~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~v~~~~  223 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKS  223 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST-TSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTEEEETT
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc-cccchhHHHHHHHhhccceEEEeccEEEEecCCeeeecC
Confidence            2368999999999999999999999999999999654332 222               155567789999999999999


Q ss_pred             CCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          181 DTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       181 g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                      |+++++|.||+|+| .+||+  .+++..|++++..
T Consensus       224 g~~~~~D~vl~a~G-~~Pn~--~~~~~~gl~~~~~  255 (437)
T 4eqs_A          224 GKVEHYDMIIEGVG-THPNS--KFIESSNIKLDRK  255 (437)
T ss_dssp             SCEEECSEEEECCC-EEESC--GGGTTSSCCCCTT
T ss_pred             CeEEeeeeEEEEec-eecCc--HHHHhhhhhhccC
Confidence            99999999999999 99999  9999999998864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.86  E-value=3.6e-21  Score=172.85  Aligned_cols=107  Identities=17%  Similarity=0.260  Sum_probs=92.2

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC-------CCC
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP-------DPF  116 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~-------~~~  116 (227)
                      +++++++|.+++. +.+...|.|.+.+++.+.||+||+|||.++.|+.|++||.+.|.+..+|...+...       .++
T Consensus       105 ~i~~~~~V~~~~~-~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~  183 (545)
T 3uox_A          105 HYRFNTRVTAARY-VENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDF  183 (545)
T ss_dssp             GEECSCCEEEEEE-EGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCC
T ss_pred             cEEECCEEEEEEE-eCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEccccccccccccccccc
Confidence            6889999999874 33446799999988899999999999966699999999999898999999888776       677


Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|+|||+|.+|+|+|..|++.+.+||++.|++
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            89999999999999999999999999999999865

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.84  E-value=4.4e-21  Score=158.33  Aligned_cols=158  Identities=9%  Similarity=0.048  Sum_probs=128.6

Q ss_pred             CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccC
Q psy810           48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFG  127 (227)
Q Consensus        48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG  127 (227)
                      +.+|..++..+   +.|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..++++.+++...+.+++++|+|+|
T Consensus        76 ~~~v~~i~~~~---~~~~v~~~~g~~~~~d~vviAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G  150 (297)
T 3fbs_A           76 EGRVTDAKGSF---GEFIVEIDGGRRETAGRLILAMGV--TDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAAS  150 (297)
T ss_dssp             ESCEEEEEEET---TEEEEEETTSCEEEEEEEEECCCC--EEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCS
T ss_pred             EeEEEEEEEcC---CeEEEEECCCCEEEcCEEEECCCC--CCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecC
Confidence            46888887643   568999888888999999999999  7889999998877666677766666666778999999999


Q ss_pred             ccHHHHHHHHHhccCeEEEEeecCccccccC-----CCceEE-cCCccEEeCC-ceEEcCCCEEeccEEEEccccccccc
Q psy810          128 PSGVDIAMDIEKVAKNVFLSHHISVAFKHQI-----GDSVVQ-KPDIKRLLQD-SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       128 ~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~-----~~~i~~-~~~i~~~~~~-~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+|+|+|..|.+.+ +|+++.++...+...+     ..+|.+ ...+.++..+ .+.+.+|+++++|.||+|+| +.|+.
T Consensus       151 ~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G-~~p~~  228 (297)
T 3fbs_A          151 PMAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPK-LRITV  228 (297)
T ss_dssp             TTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHTTCEEECSCEEEEETTEEEEETTSCEEEESEEEECCE-EECCC
T ss_pred             ccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHCCcEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccC-cccCc
Confidence            99999999999998 9999998654332211     123333 3578888776 79999999999999999999 99999


Q ss_pred             cccccCCccccccc
Q psy810          201 KLTFLATFSISMAM  214 (227)
Q Consensus       201 ~~~~l~~~gl~~~~  214 (227)
                        +|++.++++++.
T Consensus       229 --~~~~~~g~~~~~  240 (297)
T 3fbs_A          229 --DWIEKLGCAVEE  240 (297)
T ss_dssp             --SCHHHHTCCEEE
T ss_pred             --hhHHhcCCcccc
Confidence              999998888764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.82  E-value=9.2e-20  Score=152.68  Aligned_cols=164  Identities=20%  Similarity=0.280  Sum_probs=131.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC-CCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS-VPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~-~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      +++++++++|.+++....  +.|.+.+.+++ +.||+||+|||+.. .|..|++||.+.+.+..+|+ .+++...+++++
T Consensus        81 ~~~~~~~~~v~~i~~~~~--~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~  156 (332)
T 3lzw_A           81 DQTICLEQAVESVEKQAD--GVFKLVTNEET-HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRR  156 (332)
T ss_dssp             CCEEECSCCEEEEEECTT--SCEEEEESSEE-EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCE
T ss_pred             CCcEEccCEEEEEEECCC--CcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCE
Confidence            568889999999986432  47999998886 99999999999943 68888999988777677777 677777778999


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCcccccc-------CCCceEE--cCCccEEeCCc----eEEcC-----CC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQ-------IGDSVVQ--KPDIKRLLQDS----VVFQD-----DT  182 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~-------~~~~i~~--~~~i~~~~~~~----v~~~~-----g~  182 (227)
                      ++|||+|.+|+|+|..|.+.+.+|+++++.+. +...       ...+|.+  ...+.++..++    +++.+     +.
T Consensus       157 v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  235 (332)
T 3lzw_A          157 VAILGGGDSAVDWALMLEPIAKEVSIIHRRDK-FRAHEHSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKE  235 (332)
T ss_dssp             EEEECSSHHHHHHHHHHTTTBSEEEEECSSSS-CSSCHHHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEE
T ss_pred             EEEECCCHhHHHHHHHHHhhCCeEEEEEecCc-CCccHHHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceE
Confidence            99999999999999999999999999999543 2110       0124444  34677776643    77766     34


Q ss_pred             EEeccEEEEccccccccccccccCCcccccc
Q psy810          183 SHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       183 ~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ++++|.||+|+| +.|++  ++++.++++++
T Consensus       236 ~~~~D~vv~a~G-~~p~~--~~~~~~~~~~~  263 (332)
T 3lzw_A          236 ILEIDDLIVNYG-FVSSL--GPIKNWGLDIE  263 (332)
T ss_dssp             EEECSEEEECCC-EECCC--GGGGGSSCCEE
T ss_pred             EEECCEEEEeec-cCCCc--hHHhhcCcccc
Confidence            689999999999 99999  99999998874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.82  E-value=3.8e-19  Score=159.67  Aligned_cols=109  Identities=22%  Similarity=0.309  Sum_probs=95.1

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC-CCCCCCCCe
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR-VPDPFRDQN  120 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~  120 (227)
                      ..+++++++|.+++..+ +.+.|.|.+.+++.+.||+||+|||.++.|.+|++||.+.+.+..+|...+. +..++.+|+
T Consensus       110 ~~~i~~~~~V~~~~~~~-~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~  188 (542)
T 1w4x_A          110 RSGITFHTTVTAAAFDE-ATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQR  188 (542)
T ss_dssp             GGGEECSCCEEEEEEET-TTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCE
T ss_pred             CceEEcCcEEEEEEEcC-CCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCE
Confidence            45788999999987433 3357999988888899999999999877899999999988888899998887 456778999


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|||+|.+|+|+|..+++.+.+|+++.|++
T Consensus       189 V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          189 VGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             EEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             EEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            9999999999999999999999999998854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.82  E-value=4.6e-20  Score=153.79  Aligned_cols=172  Identities=14%  Similarity=0.105  Sum_probs=132.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .++++++ ++|.+++..+   +.|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..++++.+.+...+.+++
T Consensus        83 ~~v~~~~-~~v~~i~~~~---~~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  156 (323)
T 3f8d_A           83 YEVPVLL-DIVEKIENRG---DEFVVKTKRKGEFKADSVILGIGV--KRRKLGVPGEQEFAGRGISYCSVADAPLFKNRV  156 (323)
T ss_dssp             TTCCEEE-SCEEEEEEC-----CEEEEESSSCEEEEEEEEECCCC--EECCCCCTTTTTTBTTTEESCHHHHGGGGTTCE
T ss_pred             cCCEEEE-EEEEEEEecC---CEEEEEECCCCEEEcCEEEECcCC--CCccCCCCchhhhcCCceEEeccCCHhHcCCCE
Confidence            3557777 8888887532   578898888789999999999999  789999999887766667766666666667899


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCccccc------cCCC-ceEE--cCCccEEeCC----ceEEcC---CC--
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH------QIGD-SVVQ--KPDIKRLLQD----SVVFQD---DT--  182 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~~~-~i~~--~~~i~~~~~~----~v~~~~---g~--  182 (227)
                      ++|+|+|.+|+|+|..|.+.+.+|+++++++.....      .+.. +|.+  ...+.++..+    ++++.+   |+  
T Consensus       157 v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~  236 (323)
T 3f8d_A          157 VAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIK  236 (323)
T ss_dssp             EEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEE
T ss_pred             EEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceE
Confidence            999999999999999999999999999996533211      1122 5544  3457777654    377766   76  


Q ss_pred             EEeccEEEEccccccccccccccCCcccccccCCCCCCCCCC
Q psy810          183 SHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       183 ~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  224 (227)
                      .+++|.||+|+| +.|++  ++++..+++++..   |.+.+.
T Consensus       237 ~~~~D~vv~a~G-~~p~~--~~~~~~g~~~~~~---g~i~vd  272 (323)
T 3f8d_A          237 ELNVNGVFIEIG-FDPPT--DFAKSNGIETDTN---GYIKVD  272 (323)
T ss_dssp             EEECSEEEECCC-EECCH--HHHHHTTCCBCTT---SSBCCC
T ss_pred             EEEcCEEEEEEC-CCCCh--hHHhhcCeeecCC---CcEecC
Confidence            689999999999 99999  9999999988753   554443

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.81  E-value=8.6e-20  Score=151.94  Aligned_cols=168  Identities=13%  Similarity=0.111  Sum_probs=124.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .+++++++++|..++....+.+.|.+.++++..+.||+||+|||+  .|..|++||.+.+.+..++++..++...+.+++
T Consensus        69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  146 (310)
T 1fl2_A           69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA--KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKR  146 (310)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEESCHHHHGGGGBTCE
T ss_pred             cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhcccceeEEeccCcHhhcCCCE
Confidence            356888888999987533222468888888878999999999999  778889999876655556655433334456899


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccC-C-CceEE--cCCccEEeCC-----ceEEcC---CC-
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQI-G-DSVVQ--KPDIKRLLQD-----SVVFQD---DT-  182 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~-~-~~i~~--~~~i~~~~~~-----~v~~~~---g~-  182 (227)
                      |+|||+|.+|+|+|..|.+.+.+|+++++.+....     ..+ . .+|.+  ...+.++..+     ++.+.+   |+ 
T Consensus       147 v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~  226 (310)
T 1fl2_A          147 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI  226 (310)
T ss_dssp             EEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCE
T ss_pred             EEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcE
Confidence            99999999999999999999999999998543210     011 1 34554  3457777543     366654   54 


Q ss_pred             -EEeccEEEEccccccccccccccCCccccccc
Q psy810          183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       ++++|.||+|+| +.||+  ++|.+. ++++.
T Consensus       227 ~~i~~D~vi~a~G-~~p~~--~~l~~~-l~~~~  255 (310)
T 1fl2_A          227 HNIELAGIFVQIG-LLPNT--NWLEGA-VERNR  255 (310)
T ss_dssp             EEEECSEEEECSC-EEESC--GGGTTT-SCBCT
T ss_pred             EEEEcCEEEEeeC-CccCc--hHHhcc-ccccC
Confidence             589999999999 99999  899863 66654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.81  E-value=1.4e-19  Score=152.27  Aligned_cols=165  Identities=17%  Similarity=0.221  Sum_probs=125.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC-CCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS-VPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~-~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      +++++++++|..++..+   +.|.+.+.++..+.||+||+|||+.. .|..|+++|.+.+.+..+++. +.+...+.+++
T Consensus        79 ~~~~~~~~~v~~i~~~~---~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~  154 (335)
T 2zbw_A           79 NPVYSLGERAETLEREG---DLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKR  154 (335)
T ss_dssp             CCEEEESCCEEEEEEET---TEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCE
T ss_pred             CCEEEeCCEEEEEEECC---CEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCE
Confidence            45788899999988643   46888888777899999999999943 477888898876655445543 44555567899


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cC-----CCceEE--cCCccEEeCC----ceEEc---CC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QI-----GDSVVQ--KPDIKRLLQD----SVVFQ---DD  181 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~-----~~~i~~--~~~i~~~~~~----~v~~~---~g  181 (227)
                      |+|||+|.+|+|+|..|.+.+.+|++++|++.....     .+     ..+|.+  ...+.++..+    ++.+.   +|
T Consensus       155 v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g  234 (335)
T 2zbw_A          155 VLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQ  234 (335)
T ss_dssp             EEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTC
T ss_pred             EEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCC
Confidence            999999999999999999999999999996432110     00     114444  3457777654    47776   77


Q ss_pred             --CEEeccEEEEccccccccccccccCCcccccc
Q psy810          182 --TSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       182 --~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                        .++++|.||+|+| ++|++  ++++.++++++
T Consensus       235 ~~~~i~~D~vi~a~G-~~p~~--~~l~~~~~~~~  265 (335)
T 2zbw_A          235 EELALEVDAVLILAG-YITKL--GPLANWGLALE  265 (335)
T ss_dssp             CEEEEECSEEEECCC-EEEEC--GGGGGSCCCEE
T ss_pred             ceEEEecCEEEEeec-CCCCc--hHhhhcceecc
Confidence              4689999999999 99999  99999888876

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.81  E-value=4.6e-19  Score=155.66  Aligned_cols=202  Identities=12%  Similarity=0.107  Sum_probs=126.6

Q ss_pred             CCCchhhhhhhcCCCCCCchhhhhhcCCcceEeeecccceeEEeCceEEEEEEeeCCCCcEEEe-cCCeeEEEcCEEEEc
Q psy810            4 TPSCLPSVLTTYNSEALQPIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFA-NEEITLHYNLLQSLP   82 (227)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~-~~~~~~~~~~~vilA   82 (227)
                      ++||.|+.+..+....+....++.......+    ...+++++++++|.+++.   ....+.+. ..++..+.||++|+|
T Consensus        38 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gi~~~~~~~V~~id~---~~~~v~v~~~~~~~~~~~d~lviA  110 (452)
T 3oc4_A           38 TVGYLSGGLSAYFNHTINELHEARYITEEEL----RRQKIQLLLNREVVAMDV---ENQLIAWTRKEEQQWYSYDKLILA  110 (452)
T ss_dssp             CCSSCCC----------------CCCCHHHH----HHTTEEEECSCEEEEEET---TTTEEEEEETTEEEEEECSEEEEC
T ss_pred             CCcccCccchhhhcCCCCCHHHhhcCCHHHH----HHCCCEEEECCEEEEEEC---CCCEEEEEecCceEEEEcCEEEEC
Confidence            3566666665555443333333221111111    134567888999998874   22445553 345678999999999


Q ss_pred             cCCCCCCCCCCCCCCCcccceeeecCCCCCCCC-----CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccccc
Q psy810           83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDP-----FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQ  157 (227)
Q Consensus        83 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~  157 (227)
                      ||+  .|..|++||.+..  ..++...+.+...     ..+++++|||+|.+|+|+|..+.+.+.+||++++.+..+...
T Consensus       111 tG~--~p~~p~i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~  186 (452)
T 3oc4_A          111 TGA--SQFSTQIRGSQTE--KLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY  186 (452)
T ss_dssp             CCC--CBCCCCCBTTTCT--TEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CCc--ccCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccccc
Confidence            999  8999999997642  2344443443322     247899999999999999999999999999999965443321


Q ss_pred             CC-------------C--ceEEcCCccEEe--CCc--eEEcCCCEEeccEEEEccccccccccccccCCcccccccCCCC
Q psy810          158 IG-------------D--SVVQKPDIKRLL--QDS--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPD  218 (227)
Q Consensus       158 ~~-------------~--~i~~~~~i~~~~--~~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~~~~  218 (227)
                      ++             .  ++..+..+.++.  +++  +.+.+| ++++|.||+|+| ++||+  .+++.. ++++..   
T Consensus       187 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G-~~p~~--~~l~~~-~~~~~~---  258 (452)
T 3oc4_A          187 FDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALN-LHPQL--AYLDKK-IQRNLD---  258 (452)
T ss_dssp             CCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSC-CBCCC--SSCCTT-SCBCTT---
T ss_pred             CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcC-CCCCh--HHHHhh-hccCCC---
Confidence            22             2  344456788886  233  556555 899999999999 99999  888764 666543   


Q ss_pred             CCCCCC
Q psy810          219 GPNPTS  224 (227)
Q Consensus       219 ~~~~~~  224 (227)
                      |.+.+.
T Consensus       259 g~i~vd  264 (452)
T 3oc4_A          259 QTIAVD  264 (452)
T ss_dssp             SCBCCC
T ss_pred             CCEEEC
Confidence            444443

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.81  E-value=7.5e-20  Score=152.36  Aligned_cols=164  Identities=12%  Similarity=0.144  Sum_probs=123.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++++ ++|.+++..+   +.|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..+|++.+.+.....+++|
T Consensus        73 ~v~~~~-~~v~~i~~~~---~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  146 (311)
T 2q0l_A           73 GLKHEM-TAVQRVSKKD---SHFVILAEDGKTFEAKSVIIATGG--SPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEV  146 (311)
T ss_dssp             SCEEEC-SCEEEEEEET---TEEEEEETTSCEEEEEEEEECCCE--EECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEE
T ss_pred             CCEEEE-EEEEEEEEcC---CEEEEEEcCCCEEECCEEEECCCC--CCCCCCCCChhhccCCcEEEeecCChhhcCCCEE
Confidence            456666 7888887533   567887777778999999999999  7888999997665545566554444444567999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccC--CCceEE--cCCccEEeCC-----ceEEc---CCC--
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQI--GDSVVQ--KPDIKRLLQD-----SVVFQ---DDT--  182 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~--~~~i~~--~~~i~~~~~~-----~v~~~---~g~--  182 (227)
                      +|||+|.+|+|+|..|.+.+.+|+++++++....     ..+  ..+|++  ...+.++..+     ++.+.   +|+  
T Consensus       147 ~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~  226 (311)
T 2q0l_A          147 AVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKR  226 (311)
T ss_dssp             EEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceE
Confidence            9999999999999999999999999998543210     011  135554  3457777543     36776   676  


Q ss_pred             EEeccEEEEccccccccccccccCCcc----ccccc
Q psy810          183 SHPFDSIIYCTGAYKYSYKLTFLATFS----ISMAM  214 (227)
Q Consensus       183 ~i~~D~vi~atG~~~~~~~~~~l~~~g----l~~~~  214 (227)
                      ++++|.||+|+| +.|++  +++...+    ++++.
T Consensus       227 ~i~~D~vi~a~G-~~p~~--~~l~~~g~~~~l~~~~  259 (311)
T 2q0l_A          227 ELVVPGFFIFVG-YDVNN--AVLKQEDNSMLCKCDE  259 (311)
T ss_dssp             EEECSEEEECSC-EEECC--GGGBCTTSCBSSCBCT
T ss_pred             EEecCEEEEEec-CccCh--hhhhcccccceeEecc
Confidence            689999999999 99999  9998875    77764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.81  E-value=5.1e-20  Score=159.85  Aligned_cols=161  Identities=13%  Similarity=0.108  Sum_probs=123.5

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCC-CCCCcccceeeecCCCCCC-----
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSY-EGADLFRGLQMHSHDYRVP-----  113 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~-~g~~~~~~~~~~~~~~~~~-----  113 (227)
                      ..+++++++++|..++.     +.+.+.+.++..+.||+||+|||+  .|..|++ ||.+  .+ +++.....+.     
T Consensus        71 ~~~v~~~~~~~v~~i~~-----~~~~v~~~~g~~~~~d~lviAtG~--~~~~~~i~~G~~--~~-v~~~~~~~~~~~l~~  140 (408)
T 2gqw_A           71 APEVEWLLGVTAQSFDP-----QAHTVALSDGRTLPYGTLVLATGA--APRALPTLQGAT--MP-VHTLRTLEDARRIQA  140 (408)
T ss_dssp             SCSCEEEETCCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECCCGGGTTCS--SC-EEECCSHHHHHHHHT
T ss_pred             HCCCEEEcCCEEEEEEC-----CCCEEEECCCCEEECCEEEECCCC--CCCCCCccCCCC--Cc-EEEECCHHHHHHHHH
Confidence            34678889999998874     446777777778999999999999  8899999 9875  22 2222222111     


Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCceEE
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDSVVF  178 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~v~~  178 (227)
                      .-..+++|+|||+|.+|+|+|..|.+.+.+||++++.+..+...++             .  ++..+..+.++.++.+++
T Consensus       141 ~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~v~~  220 (408)
T 2gqw_A          141 GLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLL  220 (408)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEETTEEEE
T ss_pred             HhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEECCEEEE
Confidence            1124799999999999999999999999999999996544332222             1  344566788887447889


Q ss_pred             cCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          179 QDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       179 ~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      .+|+++++|.||+|+| ++||+  ++++..|++++
T Consensus       221 ~~g~~i~~D~vi~a~G-~~p~~--~l~~~~gl~~~  252 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIG-VLAND--ALARAAGLACD  252 (408)
T ss_dssp             TTSCEEECSEEEECSC-EEECC--HHHHHHTCCBS
T ss_pred             CCCCEEEcCEEEECcC-CCccH--HHHHhCCCCCC
Confidence            9999999999999999 99999  89988888875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.81  E-value=1e-20  Score=158.09  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEE
Q psy810           66 FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVF  145 (227)
Q Consensus        66 v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vt  145 (227)
                      ....++..+.||+||||||+  .|..|++||.+.+.+..++++..++...+++|+|+|||||++|+|+|..|++++.+||
T Consensus        95 ~~~~~~~~~~~d~liiAtGs--~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vt  172 (312)
T 4gcm_A           95 VINFGNKELTAKAVIIATGA--EYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVT  172 (312)
T ss_dssp             EEECSSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEE
T ss_pred             eeccCCeEEEeceeEEcccC--ccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEE
Confidence            34445568999999999999  8999999999887777777777777777789999999999999999999999999999


Q ss_pred             EEeecCccccccC-------CCceEEcC--CccEEe--CC---c--e-EEc--CCCEEeccEEEEccccccccccccccC
Q psy810          146 LSHHISVAFKHQI-------GDSVVQKP--DIKRLL--QD---S--V-VFQ--DDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       146 li~~~~~~~~~~~-------~~~i~~~~--~i~~~~--~~---~--v-~~~--~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +++|++..+....       ...+....  .+....  ..   .  . ...  ++..+++|.|++++| ..|+.  .++.
T Consensus       173 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g-~~~~~--~~~~  249 (312)
T 4gcm_A          173 IVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIG-MKPLT--APFK  249 (312)
T ss_dssp             EECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSC-EEESC--GGGG
T ss_pred             EEecccccCcchhHHHHHHHhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecC-CCcCc--hhHH
Confidence            9999654321110       11222111  111111  10   0  1 112  234589999999999 99999  9999


Q ss_pred             Cccccccc
Q psy810          207 TFSISMAM  214 (227)
Q Consensus       207 ~~gl~~~~  214 (227)
                      ..++..+.
T Consensus       250 ~~g~~~~~  257 (312)
T 4gcm_A          250 DLGITNDV  257 (312)
T ss_dssp             GGTCBCTT
T ss_pred             hcceecCC
Confidence            88876554

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.80  E-value=6.7e-20  Score=161.64  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=115.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeE--EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCC---CCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITL--HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDY---RVPDPF  116 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~--~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~---~~~~~~  116 (227)
                      ++++..+ ++..++.     +.+.+.+.+++.  +.||+||+|||+  .|..|++||.+.    .++..++   ......
T Consensus       103 ~v~~~~g-~v~~id~-----~~~~V~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~----~~t~~~~~~~~~~l~~  170 (466)
T 3l8k_A          103 TLTFYKG-YVKIKDP-----THVIVKTDEGKEIEAETRYMIIASGA--ETAKLRLPGVEY----CLTSDDIFGYKTSFRK  170 (466)
T ss_dssp             TEEEESE-EEEEEET-----TEEEEEETTSCEEEEEEEEEEECCCE--EECCCCCTTGGG----SBCHHHHHSTTCSCCS
T ss_pred             CCEEEEe-EEEEecC-----CeEEEEcCCCcEEEEecCEEEECCCC--CccCCCCCCccc----eEeHHHHHHHHHHHhh
Confidence            4455444 5555542     567888777777  999999999999  889999999762    2222222   212222


Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC------------CceEEcCCccEEeC---Cc--eEEc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG------------DSVVQKPDIKRLLQ---DS--VVFQ  179 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~------------~~i~~~~~i~~~~~---~~--v~~~  179 (227)
                      .+++++|||+|++|+|+|..|.+.+.+||++++.+..+...++            -++..+..+.++..   ++  +.+.
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~  250 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYS  250 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEECSCCEEEEEEEETTEEEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEEECCEEEEEEEcCCCcEEEEEE
Confidence            4789999999999999999999999999999996544332102            13344567777765   33  5666


Q ss_pred             --CCC--EEeccEEEEccccccccccccc-cCCcccccccC
Q psy810          180 --DDT--SHPFDSIIYCTGAYKYSYKLTF-LATFSISMAMS  215 (227)
Q Consensus       180 --~g~--~i~~D~vi~atG~~~~~~~~~~-l~~~gl~~~~~  215 (227)
                        +|+  ++++|.||+|+| ++|++  .+ |+..|++++..
T Consensus       251 ~~~G~~~~i~~D~vi~a~G-~~p~~--~l~l~~~gl~~~~~  288 (466)
T 3l8k_A          251 TKDGSKKSIFTNSVVLAAG-RRPVI--PEGAREIGLSISKT  288 (466)
T ss_dssp             CTTSCCEEEEESCEEECCC-EEECC--CTTTGGGTCCBCSS
T ss_pred             ecCCceEEEEcCEEEECcC-CCccc--ccchhhcCceeCCC
Confidence              676  789999999999 99999  74 78889988753

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=99.80  E-value=2.8e-19  Score=158.60  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=117.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe-cCCeeEEEcCEEEEccCCCCCCCCCCCCCCC------ccc---ceeeecCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA-NEEITLHYNLLQSLPSSHNSVPNIPSYEGAD------LFR---GLQMHSHDY  110 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~-~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~------~~~---~~~~~~~~~  110 (227)
                      .+++++++++|..++.   +...+.+. .+++..+.||+||+|||+  .|..|++||.+      .|.   ..+++...+
T Consensus       105 ~gv~v~~~~~v~~i~~---~~~~v~v~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~  179 (490)
T 2bc0_A          105 LGAKVYMESPVQSIDY---DAKTVTALVDGKNHVETYDKLIFATGS--QPILPPIKGAEIKEGSLEFEATLENLQFVKLY  179 (490)
T ss_dssp             TTCEEETTCCEEEEET---TTTEEEEEETTEEEEEECSEEEECCCE--EECCCSCBTCCBCTTCTTCCBSSTTEEECSSH
T ss_pred             CCCEEEeCCEEEEEEC---CCCEEEEEeCCcEEEEECCEEEECCCC--CcCCCCCCCccccccccccccccCCEEEeCCH
Confidence            3567888999988864   22445554 334568999999999999  88999999976      221   112332222


Q ss_pred             CCC-------CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCc
Q psy810          111 RVP-------DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDI  168 (227)
Q Consensus       111 ~~~-------~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i  168 (227)
                      .+.       ....+++|+|||+|++|+|+|..|++.+.+||++++.+..+...++             .  ++..+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v  259 (490)
T 2bc0_A          180 QNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETV  259 (490)
T ss_dssp             HHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCE
T ss_pred             HHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEE
Confidence            111       1145899999999999999999999999999999996544331222             2  34445678


Q ss_pred             cEEeCCc----eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          169 KRLLQDS----VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       169 ~~~~~~~----v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      .++..++    +.+ +|+++++|.||+|+| ++||+  ++++.. ++++.
T Consensus       260 ~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G-~~p~~--~ll~~~-l~~~~  304 (490)
T 2bc0_A          260 KEVAGNGKVEKIIT-DKNEYDVDMVILAVG-FRPNT--TLGNGK-IDLFR  304 (490)
T ss_dssp             EEEECSSSCCEEEE-SSCEEECSEEEECCC-EEECC--GGGTTC-SCBCT
T ss_pred             EEEEcCCcEEEEEE-CCcEEECCEEEECCC-CCcCh--HHHHhh-hccCC
Confidence            8886543    444 788999999999999 99999  888877 77653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.80  E-value=3.8e-20  Score=160.74  Aligned_cols=161  Identities=15%  Similarity=0.155  Sum_probs=124.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC-----CC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP-----DP  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~-----~~  115 (227)
                      .+++++++++|..++.     ..+.+.+.+++.+.||+||+|||+  .|..|++||.+. .+ .++.....+.     ..
T Consensus        70 ~~i~~~~~~~v~~id~-----~~~~v~~~~g~~~~~d~lvlAtG~--~p~~~~ipG~~~-~~-v~~~~~~~d~~~l~~~~  140 (410)
T 3ef6_A           70 ARIDMLTGPEVTALDV-----QTRTISLDDGTTLSADAIVIATGS--RARTMALPGSQL-PG-VVTLRTYGDVQVLRDSW  140 (410)
T ss_dssp             TTCEEEESCCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECCCCCTTTTS-TT-EECCCSHHHHHHHHHHC
T ss_pred             CCCEEEeCCEEEEEEC-----CCCEEEECCCCEEECCEEEEccCC--cccCCCCCCccc-cc-eEEeccHHHHHHHHHHh
Confidence            4678899999999875     456777777888999999999999  889999999653 11 2222122111     11


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC----ce
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD----SV  176 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~----~v  176 (227)
                      ..+++++|||+|++|+|+|..+.+.+.+||++++.+..+...++             .  ++..+..+.++..+    ++
T Consensus       141 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v  220 (410)
T 3ef6_A          141 TSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQV  220 (410)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEE
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEE
Confidence            24789999999999999999999999999999996543322121             1  33445678888765    48


Q ss_pred             EEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ++.||+++++|.||+|+| +.|++  ++++..|++++
T Consensus       221 ~~~dg~~i~aD~Vv~a~G-~~p~~--~l~~~~gl~~~  254 (410)
T 3ef6_A          221 MASDGRSFVADSALICVG-AEPAD--QLARQAGLACD  254 (410)
T ss_dssp             EETTSCEEECSEEEECSC-EEECC--HHHHHTTCCBS
T ss_pred             EECCCCEEEcCEEEEeeC-CeecH--HHHHhCCCccC
Confidence            899999999999999999 99999  99999988876

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.80  E-value=2e-19  Score=150.85  Aligned_cols=166  Identities=12%  Similarity=0.100  Sum_probs=121.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++++ .+|.+++........|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..+|++.+++.....+++|
T Consensus        79 gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v  155 (325)
T 2q7v_A           79 GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA--DPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKV  155 (325)
T ss_dssp             TCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE--EECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEE
T ss_pred             CCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC--CcCCCCCCChhhccCceEEEeccCCHHHcCCCEE
Confidence            456665 5788887531011127777666778999999999999  7888999998766555566554444444568999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCcccc-----ccC-C-CceEE--cCCccEEeCC----ceEEc---CCC--E
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-----HQI-G-DSVVQ--KPDIKRLLQD----SVVFQ---DDT--S  183 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-----~~~-~-~~i~~--~~~i~~~~~~----~v~~~---~g~--~  183 (227)
                      +|||+|.+|+|+|..|.+.+.+|+++++++....     ..+ . .+|++  +..+.++..+    ++.+.   +|+  +
T Consensus       156 ~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~  235 (325)
T 2q7v_A          156 VVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSE  235 (325)
T ss_dssp             EEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEE
T ss_pred             EEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEE
Confidence            9999999999999999999999999998543210     011 1 25554  4467777644    46775   676  6


Q ss_pred             EeccEEEEccccccccccccccCCccccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +++|.||+|+| ++||+  ++++.. ++++.
T Consensus       236 i~~D~vi~a~G-~~p~~--~~l~~~-~~~~~  262 (325)
T 2q7v_A          236 LATDGVFIFIG-HVPNT--AFVKDT-VSLRD  262 (325)
T ss_dssp             EECSEEEECSC-EEESC--GGGTTT-SCBCT
T ss_pred             EEcCEEEEccC-CCCCh--HHHhhh-cccCC
Confidence            89999999999 99999  999876 66653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.80  E-value=1.4e-20  Score=162.29  Aligned_cols=159  Identities=12%  Similarity=0.055  Sum_probs=113.5

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCC--
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFR--  117 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~--  117 (227)
                      ..+++++++++|.+|+.     +...+.+.+++.+.||+||+|||+  .|+.|++||.+    .+++...+.+...++  
T Consensus        74 ~~~i~~~~~~~V~~id~-----~~~~v~~~~g~~~~yd~lvlAtG~--~p~~p~i~G~~----~v~~~~~~~d~~~l~~~  142 (385)
T 3klj_A           74 KNNIKVITSEFATSIDP-----NNKLVTLKSGEKIKYEKLIIASGS--IANKIKVPHAD----EIFSLYSYDDALKIKDE  142 (385)
T ss_dssp             HTTCEEECSCCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECCCCCTTCS----CEECCSSHHHHHHHHHH
T ss_pred             HCCCEEEeCCEEEEEEC-----CCCEEEECCCCEEECCEEEEecCC--CcCCCCCCCCC----CeEEeCCHHHHHHHHHH
Confidence            34678899999999875     445777888889999999999999  89999999976    123322222222222  


Q ss_pred             ---CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCc-cEEeCCceEEcC-------CCEEec
Q psy810          118 ---DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDI-KRLLQDSVVFQD-------DTSHPF  186 (227)
Q Consensus       118 ---~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i-~~~~~~~v~~~~-------g~~i~~  186 (227)
                         +++|+|||+|++|+|+|..|.+.+.+||++++.+..+...++..+..  .+ ..+...+|.+..       |+++++
T Consensus       143 l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~--~~~~~l~~~gV~~~~~~~v~~ig~~~~~  220 (385)
T 3klj_A          143 CKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGL--FLKDKLDRLGIKIYTNSNFEEMGDLIRS  220 (385)
T ss_dssp             HHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHH--HHHHHHHTTTCEEECSCCGGGCHHHHHH
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHH--HHHHHHHhCCCEEEeCCEEEEcCeEEec
Confidence               68999999999999999999999999999999654433223211100  00 001111222211       567899


Q ss_pred             cEEEEccccccccccccccCCccccccc
Q psy810          187 DSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       187 D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      |.||+|+| ++||+  .|++..|++.+.
T Consensus       221 D~vv~a~G-~~p~~--~~~~~~gl~~~~  245 (385)
T 3klj_A          221 SCVITAVG-VKPNL--DFIKDTEIASKR  245 (385)
T ss_dssp             SEEEECCC-EEECC--GGGTTSCCCBSS
T ss_pred             CeEEECcC-cccCh--hhhhhcCCCcCC
Confidence            99999999 99999  999999988763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.80  E-value=2.2e-19  Score=159.30  Aligned_cols=156  Identities=16%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEec---CCe---eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFAN---EEI---TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDP  115 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~---~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~  115 (227)
                      +++++.+. +..++.     ....+.+   .++   ..+.||+||||||+  .|..|++||.+.    .++..++.....
T Consensus       118 gv~~~~g~-~~~i~~-----~~v~v~~~~~~~g~~~~~~~~d~lviAtGs--~p~~p~i~g~~~----~~~~~~~~~~~~  185 (490)
T 1fec_A          118 GLTFHQGF-GALQDN-----HTVLVRESADPNSAVLETLDTEYILLATGS--WPQHLGIEGDDL----CITSNEAFYLDE  185 (490)
T ss_dssp             TEEEEESE-EEEEET-----TEEEEESSSSTTSCEEEEEEEEEEEECCCE--EECCCCSBTGGG----CBCHHHHTTCSS
T ss_pred             CcEEEEeE-EEEeeC-----CEEEEEeeccCCCCceEEEEcCEEEEeCCC--CCCCCCCCCccc----eecHHHHhhhhh
Confidence            55666554 444432     3455543   244   68999999999999  889999998642    222222222222


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhc---cCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC---
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD---  174 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~---  174 (227)
                       .+++++|||+|++|+|+|..|.++   +.+||++++.+..+. .++             .  ++..+..+.++..+   
T Consensus       186 -~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~  263 (490)
T 1fec_A          186 -APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRTHENPAKVTKNADG  263 (490)
T ss_dssp             -CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS
T ss_pred             -cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC
Confidence             478999999999999999999999   999999999654332 122             1  34446678888632   


Q ss_pred             --ceEEcCCCEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          175 --SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       175 --~v~~~~g~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                        .+.+.+|+++++|.||+|+| ++||+  .+  ++..|++++.
T Consensus       264 ~~~v~~~~G~~i~~D~vv~a~G-~~p~~--~~L~l~~~gl~~~~  304 (490)
T 1fec_A          264 TRHVVFESGAEADYDVVMLAIG-RVPRS--QTLQLEKAGVEVAK  304 (490)
T ss_dssp             CEEEEETTSCEEEESEEEECSC-EEESC--TTSCGGGGTCCBCT
T ss_pred             EEEEEECCCcEEEcCEEEEccC-CCcCc--cccCchhcCccCCC
Confidence              36778888999999999999 99999  84  5788888874

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.80  E-value=2.7e-20  Score=159.57  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=118.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF----  116 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~----  116 (227)
                      .+++++++++|..++.     ..+.|. .++..+.||+||||||+  .|..|++||.+    ..++...+.+...+    
T Consensus        73 ~~v~~~~g~~v~~id~-----~~~~V~-~~g~~~~~d~lViATGs--~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~  140 (367)
T 1xhc_A           73 RGIEIRLAEEAKLIDR-----GRKVVI-TEKGEVPYDTLVLATGA--RAREPQIKGKE----YLLTLRTIFDADRIKESI  140 (367)
T ss_dssp             HTEEEECSCCEEEEET-----TTTEEE-ESSCEEECSEEEECCCE--EECCCCSBTGG----GEECCCSHHHHHHHHHHH
T ss_pred             CCcEEEECCEEEEEEC-----CCCEEE-ECCcEEECCEEEECCCC--CCCCCCCCCcC----CEEEEcCHHHHHHHHHHh
Confidence            4678888888988874     446666 45568999999999999  88999999832    12332222222221    


Q ss_pred             -CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------CceE--EcCCccEEeCCceEEcC
Q psy810          117 -RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQDSVVFQD  180 (227)
Q Consensus       117 -~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~~v~~~~  180 (227)
                       .+++++|||+|++|+|+|..|.+.+.+||++++.+..+.  ++             .+|+  .+..+.++..+++++++
T Consensus       141 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~  218 (367)
T 1xhc_A          141 ENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNS  218 (367)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETT
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECC
Confidence             358999999999999999999999999999999654332  22             2343  35578888777899998


Q ss_pred             CCEEeccEEEEccccccccccccccCCcccccc
Q psy810          181 DTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       181 g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      |+ +++|.||+|+| ++||+  ++++..|++++
T Consensus       219 g~-i~~D~vi~a~G-~~p~~--~ll~~~gl~~~  247 (367)
T 1xhc_A          219 GF-IEGKVKICAIG-IVPNV--DLARRSGIHTG  247 (367)
T ss_dssp             EE-EECSCEEEECC-EEECC--HHHHHTTCCBS
T ss_pred             CE-EEcCEEEECcC-CCcCH--HHHHhCCCCCC
Confidence            88 99999999999 99999  88988888775

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.80  E-value=1.1e-19  Score=161.40  Aligned_cols=133  Identities=14%  Similarity=0.157  Sum_probs=102.9

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc---cCeEEEE
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV---AKNVFLS  147 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli  147 (227)
                      ++.+.||+||||||+  .|..|++||.+.    .++..++..... .+++++|||+|.+|+|+|..|.+.   +.+||++
T Consensus       151 ~~~~~~d~lViATGs--~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  223 (495)
T 2wpf_A          151 KERLQADHILLATGS--WPQMPAIPGIEH----CISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLC  223 (495)
T ss_dssp             EEEEEEEEEEECCCE--EECCCCCTTGGG----CEEHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CeEEEcCEEEEeCCC--CcCCCCCCCccc----cccHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEE
Confidence            678999999999999  889999998742    233333333333 478999999999999999999999   9999999


Q ss_pred             eecCccccccCC-------------C--ceEEcCCccEEeCC-----ceEEcCCCEEeccEEEEccccccccccccc--c
Q psy810          148 HHISVAFKHQIG-------------D--SVVQKPDIKRLLQD-----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF--L  205 (227)
Q Consensus       148 ~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~-----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~--l  205 (227)
                      ++.+..+.. ++             .  ++..+..|.++..+     .+++.+|+++++|.||+|+| ++||+  .+  +
T Consensus       224 ~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G-~~p~~--~~L~l  299 (495)
T 2wpf_A          224 YRNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIG-RIPRT--NDLQL  299 (495)
T ss_dssp             ESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC-EEECC--GGGTG
T ss_pred             EcCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCC-Ccccc--cccch
Confidence            996543321 21             1  44456678888632     37788998999999999999 99999  85  5


Q ss_pred             CCccccccc
Q psy810          206 ATFSISMAM  214 (227)
Q Consensus       206 ~~~gl~~~~  214 (227)
                      +..|++++.
T Consensus       300 ~~~gl~~~~  308 (495)
T 2wpf_A          300 GNVGVKLTP  308 (495)
T ss_dssp             GGTTCCBCT
T ss_pred             hhcCccCCC
Confidence            788888874

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.79  E-value=6e-20  Score=161.42  Aligned_cols=158  Identities=13%  Similarity=0.120  Sum_probs=113.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .+++++.++.+. ++   .  +.+.+.+.++ ..+.||+||+|||+  .|..|+++|.+.   ..+++.+...... .++
T Consensus       104 ~gv~~~~g~~~~-id---~--~~v~V~~~~G~~~i~~d~lViATGs--~p~~~~~~g~~~---~v~~~~~~~~~~~-~~~  171 (455)
T 1ebd_A          104 NKVEIVKGEAYF-VD---A--NTVRVVNGDSAQTYTFKNAIIATGS--RPIELPNFKFSN---RILDSTGALNLGE-VPK  171 (455)
T ss_dssp             TTCEEEESEEEE-EE---T--TEEEEEETTEEEEEECSEEEECCCE--EECCBTTBCCCS---SEECHHHHHTCSS-CCS
T ss_pred             CCCEEEEEEEEE-cc---C--CeEEEEeCCCcEEEEeCEEEEecCC--CCCCCCCCCccc---eEecHHHHhcccc-CCC
Confidence            356677666543 32   1  5677877766 78999999999999  888888888653   1344333322222 468


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cc--eEEc-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DS--VVFQ-  179 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~--v~~~-  179 (227)
                      +++|||+|.+|+|+|..|.+.|.+||++++.+..+. .++             .  ++..+..+.++..  ++  +.+. 
T Consensus       172 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  250 (455)
T 1ebd_A          172 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEA  250 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEe
Confidence            999999999999999999999999999999654322 121             1  3344556777753  22  3443 


Q ss_pred             --CCCEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 --DDTSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 --~g~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                        ++.++++|.||+|+| ++||+  ++  ++..|++++.
T Consensus       251 ~g~~~~~~~D~vv~a~G-~~p~~--~~l~~~~~g~~~~~  286 (455)
T 1ebd_A          251 NGETKTIDADYVLVTVG-RRPNT--DELGLEQIGIKMTN  286 (455)
T ss_dssp             TTEEEEEEESEEEECSC-EEESC--SSSSTTTTTCCBCT
T ss_pred             CCceeEEEcCEEEECcC-CCccc--CcCChhhcCCccCC
Confidence              456799999999999 99999  88  6788888864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.79  E-value=5.1e-19  Score=150.50  Aligned_cols=166  Identities=15%  Similarity=0.203  Sum_probs=125.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC-CCCCCCCCC-CCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS-VPNIPSYEG-ADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~-~p~~p~~~g-~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      ++.++++++|..++..+.  ..|.+.+.++..+.||+||+|||+.. .|..|++|| .+.+.+..++++ +++..++.++
T Consensus        88 ~~~~~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~  164 (360)
T 3ab1_A           88 NPDVVLNETVTKYTKLDD--GTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGK  164 (360)
T ss_dssp             CCEEECSCCEEEEEECTT--SCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTC
T ss_pred             CCEEEcCCEEEEEEECCC--ceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCC
Confidence            467888999999886432  36889888887899999999999943 577778888 666655445544 4555556789


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cCC-----CceEE--cCCccEEeCC-----ceEEc--C
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QIG-----DSVVQ--KPDIKRLLQD-----SVVFQ--D  180 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~~-----~~i~~--~~~i~~~~~~-----~v~~~--~  180 (227)
                      +|+|||+|.+|+|+|..|.+.+.+|+++++++.....     .+.     .+|++  ...+.++..+     +|.+.  +
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~  244 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSD  244 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETT
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecC
Confidence            9999999999999999999999999999995432110     010     12444  3357777542     46665  7


Q ss_pred             C--CEEeccEEEEccccccccccccccCCcccccc
Q psy810          181 D--TSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       181 g--~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      |  ..+++|.||+|+| +.|++  ++++..+++++
T Consensus       245 g~~~~i~~D~vi~a~G-~~p~~--~~l~~~~~~~~  276 (360)
T 3ab1_A          245 GSKWTVEADRLLILIG-FKSNL--GPLARWDLELY  276 (360)
T ss_dssp             CCEEEEECSEEEECCC-BCCSC--GGGGGSSCCEE
T ss_pred             CCeEEEeCCEEEECCC-CCCCH--HHHHhhccccc
Confidence            7  4689999999999 99999  99998888876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.3e-20  Score=162.85  Aligned_cols=142  Identities=14%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             CcEEEecCCee--EEEcCEEEEccCCCCCCCCC-CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           62 KCLHFANEEIT--LHYNLLQSLPSSHNSVPNIP-SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        62 ~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ..+.+.+.+++  .+.||+||+|||+  .|..| ++||.+.    .++...+..... .+++++|||+|.+|+|+|..|.
T Consensus       133 ~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~~i~g~~~----~~~~~~~~~l~~-~~~~vvViGgG~ig~E~A~~l~  205 (479)
T 2hqm_A          133 GNVEVQKRDNTTEVYSANHILVATGG--KAIFPENIPGFEL----GTDSDGFFRLEE-QPKKVVVVGAGYIGIELAGVFH  205 (479)
T ss_dssp             SCEEEEESSSCCEEEEEEEEEECCCE--EECCCTTSTTGGG----SBCHHHHHHCSS-CCSEEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCccc----ccchHHHhcccc-cCCeEEEECCCHHHHHHHHHHH
Confidence            45667665554  7999999999999  88898 8998642    122222212222 4789999999999999999999


Q ss_pred             hccCeEEEEeecCccccccCC---------------CceEEcCCccEEeC--C----ceEEcCC-CEEeccEEEEccccc
Q psy810          139 KVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ--D----SVVFQDD-TSHPFDSIIYCTGAY  196 (227)
Q Consensus       139 ~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~--~----~v~~~~g-~~i~~D~vi~atG~~  196 (227)
                      +.+.+||++++.+..+. .++               -++..+..+.++..  +    .+.+.+| +++++|.||+|+| +
T Consensus       206 ~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G-~  283 (479)
T 2hqm_A          206 GLGSETHLVIRGETVLR-KFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIG-R  283 (479)
T ss_dssp             HTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSC-E
T ss_pred             HcCCceEEEEeCCcccc-ccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCC-C
Confidence            99999999999654332 122               13344567888753  2    3677888 7899999999999 9


Q ss_pred             cccccccc-cCCccccccc
Q psy810          197 KYSYKLTF-LATFSISMAM  214 (227)
Q Consensus       197 ~~~~~~~~-l~~~gl~~~~  214 (227)
                      +||+  .+ ++..|++++.
T Consensus       284 ~p~~--~l~l~~~gl~~~~  300 (479)
T 2hqm_A          284 KSHL--GMGSENVGIKLNS  300 (479)
T ss_dssp             EECC--CSSGGGGTCCBCT
T ss_pred             CCcc--ccChhhcCceECC
Confidence            9998  87 8888998874

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.79  E-value=1e-18  Score=156.14  Aligned_cols=168  Identities=13%  Similarity=0.115  Sum_probs=128.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .+++++++++|..+.....+.+.|.+.+.++..+.||+||+|||+  .|..|++||.+.+.+..++++..++...+.+++
T Consensus       280 ~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~--~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~  357 (521)
T 1hyu_A          280 YDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA--KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKR  357 (521)
T ss_dssp             SCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE--EECCCCCTTTTTTTTTTEECCTTCCGGGGBTSE
T ss_pred             cCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC--CcCCCCCCChhhhcCceEEEeecCchhhcCCCe
Confidence            456888899999987432223478898888888999999999999  778889999877766667777666655567899


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cCC--CceEE--cCCccEEeCC-----ceEEcC---CC-
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QIG--DSVVQ--KPDIKRLLQD-----SVVFQD---DT-  182 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~~--~~i~~--~~~i~~~~~~-----~v~~~~---g~-  182 (227)
                      |+|||+|++|+|+|..|++.+.+||++++.+.....     .+.  .+|.+  +..+.++.++     ++.+.+   |+ 
T Consensus       358 V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~  437 (521)
T 1hyu_A          358 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI  437 (521)
T ss_dssp             EEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCE
T ss_pred             EEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCce
Confidence            999999999999999999999999999985432211     111  24544  4457777643     356654   54 


Q ss_pred             -EEeccEEEEccccccccccccccCCccccccc
Q psy810          183 -SHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       183 -~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       .+++|.||+|+| +.||+  +||.+ +++++.
T Consensus       438 ~~i~~D~vi~a~G-~~pn~--~~l~~-~l~~~~  466 (521)
T 1hyu_A          438 HSVALAGIFVQIG-LLPNT--HWLEG-ALERNR  466 (521)
T ss_dssp             EEEECSEEEECCC-EEESC--GGGTT-TSCBCT
T ss_pred             EEEEcCEEEECcC-CCCCc--hHHhh-hhccCC
Confidence             589999999999 99999  99986 466654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.79  E-value=8.7e-20  Score=163.51  Aligned_cols=135  Identities=17%  Similarity=0.199  Sum_probs=98.6

Q ss_pred             CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810           70 EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +++.+.++++|||||+  +|.+|+.++.+.  ...+.+.+..+... .+++++|||||++|+|+|..++++|.+||++.+
T Consensus       180 ~~~~i~a~~iiIATGs--~P~~P~~~~~~~--~~~~ts~~~l~l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~  254 (542)
T 4b1b_A          180 KEETVTGKYILIATGC--RPHIPDDVEGAK--ELSITSDDIFSLKK-DPGKTLVVGASYVALECSGFLNSLGYDVTVAVR  254 (542)
T ss_dssp             CEEEEEEEEEEECCCE--EECCCSSSBTHH--HHCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES
T ss_pred             ceEEEeeeeEEeccCC--CCCCCCcccCCC--ccccCchhhhcccc-CCceEEEECCCHHHHHHHHHHHhcCCeEEEecc
Confidence            5578999999999999  899887654322  11233334444444 378999999999999999999999999999987


Q ss_pred             cCccccccCC-------------C--ceEEcCCccEEeCC--c--eEEcCCCEEeccEEEEcccccccccccccc--CCc
Q psy810          150 ISVAFKHQIG-------------D--SVVQKPDIKRLLQD--S--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFL--ATF  208 (227)
Q Consensus       150 ~~~~~~~~~~-------------~--~i~~~~~i~~~~~~--~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l--~~~  208 (227)
                       ++.+.. ++             .  .+.....+.++...  .  +.+.++..+.+|.||+|+| .+||+  ..|  +..
T Consensus       255 -~~~L~~-~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG-R~Pnt--~~L~le~~  329 (542)
T 4b1b_A          255 -SIVLRG-FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG-RKGDI--DGLNLESL  329 (542)
T ss_dssp             -SCSSTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC-EEESC--GGGCGGGT
T ss_pred             -cccccc-cchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc-ccCCc--cccCcccc
Confidence             444432 22             1  33445566666532  2  6678888999999999999 99999  765  455


Q ss_pred             cccccc
Q psy810          209 SISMAM  214 (227)
Q Consensus       209 gl~~~~  214 (227)
                      |++++.
T Consensus       330 gv~~~~  335 (542)
T 4b1b_A          330 NMNVNK  335 (542)
T ss_dssp             TCCEET
T ss_pred             eeeecc
Confidence            666654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.78  E-value=9.1e-20  Score=161.05  Aligned_cols=159  Identities=9%  Similarity=0.007  Sum_probs=113.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCC-e-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEE-I-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~-~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      +++++.++.+ .++   .  +.+.+.+.+ + ..+.||+||+|||+  .|..|+++|.+..  ..+++.+...... .++
T Consensus       111 gv~~~~g~~~-~~~---~--~~~~v~~~~gg~~~~~~d~lViAtGs--~p~~p~i~g~~~~--~v~t~~~~~~~~~-~~~  179 (474)
T 1zmd_A          111 KVVHVNGYGK-ITG---K--NQVTATKADGGTQVIDTKNILIATGS--EVTPFPGITIDED--TIVSSTGALSLKK-VPE  179 (474)
T ss_dssp             TCEEEESEEE-EEE---T--TEEEEECTTSCEEEEEEEEEEECCCE--EECCCTTCCCCSS--SEECHHHHTTCSS-CCS
T ss_pred             CCEEEEEEEE-Eec---C--CEEEEEecCCCcEEEEeCEEEECCCC--CCCCCCCCCCCcC--cEEcHHHHhhccc-cCc
Confidence            4566666532 232   1  567777765 3 67999999999999  8899999987532  2344444333333 368


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------CceE--EcCCccEEeCC--c-eEE---
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQD--S-VVF---  178 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~--~-v~~---  178 (227)
                      +++|||+|++|+|+|..|.+.|.+||++++.+..+...++             .+|+  .+..+.++..+  + +.+   
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~  259 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIE  259 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEE
Confidence            9999999999999999999999999999996543331222             1333  34567777532  2 443   


Q ss_pred             ----cCCCEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          179 ----QDDTSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       179 ----~~g~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                          .++.++++|.||+|+| ++||+  .+  +++.|++++.
T Consensus       260 ~~~~~~~~~i~~D~vv~a~G-~~p~~--~~l~l~~~g~~~~~  298 (474)
T 1zmd_A          260 AASGGKAEVITCDVLLVCIG-RRPFT--KNLGLEELGIELDP  298 (474)
T ss_dssp             ETTSCCCEEEEESEEEECSC-EEECC--TTSSHHHHTCCCCT
T ss_pred             ecCCCCceEEEcCEEEECcC-CCcCC--CcCCchhcCCccCC
Confidence                3456799999999999 99999  87  6677888764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.78  E-value=1.1e-18  Score=146.04  Aligned_cols=163  Identities=13%  Similarity=0.133  Sum_probs=119.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++++ .+|..++...   +.|.+.+++ ..+.||+||+|||+  .|..|++||.+.+.+..++++...+.....++++
T Consensus        86 ~v~~~~-~~v~~i~~~~---~~~~v~~~~-~~~~~~~li~AtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v  158 (319)
T 3cty_A           86 AKIREG-VEVRSIKKTQ---GGFDIETND-DTYHAKYVIITTGT--THKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRV  158 (319)
T ss_dssp             SEEEET-CCEEEEEEET---TEEEEEESS-SEEEEEEEEECCCE--EECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEE
T ss_pred             CCEEEE-eeEEEEEEeC---CEEEEEECC-CEEEeCEEEECCCC--CcccCCCCChHHhCCceEEEEEecchhhcCCCeE
Confidence            456666 6888887533   457777644 57999999999999  7888999997665444455443333334567999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cC-CC--ceEEcCCccEEeCC-----ceEEc---CCC--E
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QI-GD--SVVQKPDIKRLLQD-----SVVFQ---DDT--S  183 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~-~~--~i~~~~~i~~~~~~-----~v~~~---~g~--~  183 (227)
                      +|||+|.+|+|+|..|.+.+.+|+++++.+.....     .+ ..  ++.....+.++..+     ++.+.   +|+  .
T Consensus       159 ~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~  238 (319)
T 3cty_A          159 VTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKL  238 (319)
T ss_dssp             EEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEE
T ss_pred             EEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEE
Confidence            99999999999999999999999999985432100     00 12  33344567777543     36665   676  5


Q ss_pred             EeccEEEEccccccccccccccCCccccccc
Q psy810          184 HPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       184 i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +++|.||+|+| +.||+  ++++..|++++.
T Consensus       239 i~~D~vi~a~G-~~p~~--~~l~~~gl~~~~  266 (319)
T 3cty_A          239 IETDGVFIYVG-LIPQT--SFLKDSGVKLDE  266 (319)
T ss_dssp             ECCSEEEECCC-EEECC--GGGTTSCCCBCT
T ss_pred             EecCEEEEeeC-CccCh--HHHhhccccccC
Confidence            89999999999 99999  999998888764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.78  E-value=9.6e-19  Score=145.40  Aligned_cols=170  Identities=12%  Similarity=0.194  Sum_probs=126.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEE--EecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLH--FANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~--v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      +++++++ +|.++ ... ..+.|.  +.+++  .+.||+||+|||+  .|..|++||.+.+.+..++.+.+.+...+.++
T Consensus        76 ~v~~~~~-~v~~i-~~~-~~~~~~v~~~~~~--~~~~d~lvlAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  148 (315)
T 3r9u_A           76 GLKHEMV-GVEQI-LKN-SDGSFTIKLEGGK--TELAKAVIVCTGS--APKKAGFKGEDEFFGKGVSTCATCDGFFYKNK  148 (315)
T ss_dssp             CCEEECC-CEEEE-EEC-TTSCEEEEETTSC--EEEEEEEEECCCE--EECCCCCBTTTTTBTTTEESCHHHHGGGGTTS
T ss_pred             CcEEEEE-EEEEE-ecC-CCCcEEEEEecCC--EEEeCEEEEeeCC--CCCCCCCCChhhcCCCeEEeeecccccccCcC
Confidence            4567776 88887 322 124577  54444  8999999999999  88999999988776667777666555566789


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-------cC-CCceEE--cCCccEEeCCc-----eEEc--CCC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-------QI-GDSVVQ--KPDIKRLLQDS-----VVFQ--DDT  182 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-------~~-~~~i~~--~~~i~~~~~~~-----v~~~--~g~  182 (227)
                      +++|+|+|.+|+|+|..|.+.+.+|+++++++. +..       .+ ..+|.+  +..+.++..++     +++.  +|+
T Consensus       149 ~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~  227 (315)
T 3r9u_A          149 EVAVLGGGDTALEEALYLANICSKIYLIHRRDE-FRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGS  227 (315)
T ss_dssp             EEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS-CBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSC
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC-CCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCC
Confidence            999999999999999999999999999998543 211       01 234443  45677775443     6666  786


Q ss_pred             --EEeccEEEEccccccccccccccCC---cc-cccccCCCCCCCCCCC
Q psy810          183 --SHPFDSIIYCTGAYKYSYKLTFLAT---FS-ISMAMSTPDGPNPTSR  225 (227)
Q Consensus       183 --~i~~D~vi~atG~~~~~~~~~~l~~---~g-l~~~~~~~~~~~~~~~  225 (227)
                        ++++|.||+|+| +.|+.  .++..   .| ++++..   |.+.+.+
T Consensus       228 ~~~~~~D~vv~a~G-~~p~~--~~~~~~~~~g~l~~~~~---g~i~vd~  270 (315)
T 3r9u_A          228 IRDLNVPGIFTFVG-LNVRN--EILKQDDSKFLCNMEEG---GQVSVDL  270 (315)
T ss_dssp             EEEECCSCEEECSC-EEECC--GGGBCTTSCBSSCBCTT---SCBCCCT
T ss_pred             eEEeecCeEEEEEc-CCCCc--hhhhcccccceeeecCC---CcEEeCC
Confidence              689999999999 99999  88876   55 777653   5555443

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.77  E-value=2.3e-19  Score=158.21  Aligned_cols=158  Identities=9%  Similarity=0.015  Sum_probs=114.9

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      ++++++++.+. ++   .  +.+.+.+.++  ..+.||+||+|||+  .|..|+++|.+..  ..++..+...... .++
T Consensus       110 gv~~~~g~~~~-~~---~--~~~~v~~~~G~~~~i~~d~lIiAtGs--~p~~p~~~g~~~~--~v~~~~~~~~~~~-~~~  178 (470)
T 1dxl_A          110 KVTYVKGYGKF-VS---P--SEISVDTIEGENTVVKGKHIIIATGS--DVKSLPGVTIDEK--KIVSSTGALALSE-IPK  178 (470)
T ss_dssp             TCEEEESCEEE-EE---T--TEEEECCSSSCCEEEECSEEEECCCE--EECCBTTBCCCSS--SEECHHHHTTCSS-CCS
T ss_pred             CCEEEEeEEEE-ec---C--CEEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCCCcc--cEEeHHHhhhhhh-cCC
Confidence            56777776543 32   1  5677776666  78999999999999  8888888886531  2344443333333 478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc----eEEc-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS----VVFQ-  179 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~----v~~~-  179 (227)
                      +++|||+|.+|+|+|..|.+.+.+||++++.+..+. .++             .  ++..+..+.++..++    +.+. 
T Consensus       179 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  257 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEP  257 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEe
Confidence            999999999999999999999999999999654332 121             1  344455677886532    4444 


Q ss_pred             --CC--CEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 --DD--TSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 --~g--~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                        +|  .++++|.||+|+| ++||+  .+  ++..|++++.
T Consensus       258 ~~~g~~~~~~~D~vv~a~G-~~p~~--~~l~~~~~gl~~~~  295 (470)
T 1dxl_A          258 SAGGEQTIIEADVVLVSAG-RTPFT--SGLNLDKIGVETDK  295 (470)
T ss_dssp             SSSCCCEEEEESEEECCCC-EEECC--TTSCCTTTTCCBCS
T ss_pred             cCCCcceEEECCEEEECCC-CCcCC--CCCCchhcCCccCC
Confidence              55  5789999999999 99999  88  7888888874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.77  E-value=9.6e-20  Score=160.03  Aligned_cols=138  Identities=14%  Similarity=0.186  Sum_probs=102.3

Q ss_pred             EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeE
Q psy810           65 HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV  144 (227)
Q Consensus        65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~V  144 (227)
                      .+.. ++..+.||+||+|||+  .|..|++||.+.    .++..++..... .+++++|||+|.+|+|+|..|.+.+.+|
T Consensus       122 ~v~~-~g~~~~~d~lviAtGs--~p~~p~i~g~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~V  193 (450)
T 1ges_A          122 TLEV-NGETITADHILIATGG--RPSHPDIPGVEY----GIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKT  193 (450)
T ss_dssp             EEEE-TTEEEEEEEEEECCCE--EECCCCSTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             EEEE-CCEEEEeCEEEECCCC--CCCCCCCCCccc----eecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEE
Confidence            3444 4568999999999999  889999998642    122222222222 3689999999999999999999999999


Q ss_pred             EEEeecCccccccCC---------------CceEEcCCccEEeCC-----ceEEcCCCEEeccEEEEccccccccccccc
Q psy810          145 FLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQD-----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF  204 (227)
Q Consensus       145 tli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~~-----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~  204 (227)
                      +++++.+..+. .++               -++..+..+.++..+     .+++.+|+++++|.||+|+| ++||+  .+
T Consensus       194 tlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G-~~p~~--~~  269 (450)
T 1ges_A          194 HLFEMFDAPLP-SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG-REPAN--DN  269 (450)
T ss_dssp             EEECSSSSSST-TSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC-EEESC--TT
T ss_pred             EEEEeCCchhh-hhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCC-CCcCC--CC
Confidence            99999654332 122               133445677777642     37788998999999999999 99999  85


Q ss_pred             --cCCccccccc
Q psy810          205 --LATFSISMAM  214 (227)
Q Consensus       205 --l~~~gl~~~~  214 (227)
                        ++..|++++.
T Consensus       270 l~~~~~gl~~~~  281 (450)
T 1ges_A          270 INLEAAGVKTNE  281 (450)
T ss_dssp             SCHHHHTCCBCT
T ss_pred             CCchhcCceECC
Confidence              4677888764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.77  E-value=8.3e-19  Score=153.89  Aligned_cols=164  Identities=14%  Similarity=0.200  Sum_probs=122.2

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCC------
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRV------  112 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~------  112 (227)
                      ..+++++++++|..++.     +.+.+.+.++ ..+.||+||+|||+  .|..|++||.+.. + .+......+      
T Consensus        71 ~~gi~v~~~~~v~~i~~-----~~~~v~~~~g~~~~~~d~lviAtG~--~p~~p~i~G~~~~-~-v~~~~~~~~~~~~~~  141 (449)
T 3kd9_A           71 KRGIDLHLNAEVIEVDT-----GYVRVRENGGEKSYEWDYLVFANGA--SPQVPAIEGVNLK-G-VFTADLPPDALAIRE  141 (449)
T ss_dssp             HTTCEEETTCEEEEECS-----SEEEEECSSSEEEEECSEEEECCCE--EECCCSCBTTTST-T-EECSCSTHHHHHHHH
T ss_pred             hcCcEEEecCEEEEEec-----CCCEEEECCceEEEEcCEEEECCCC--CCCCCCCCCCCCC-C-EEEeCCHHHHHHHHH
Confidence            34678899999998864     5577777766 58999999999999  8899999997541 1 111111111      


Q ss_pred             -CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC------------C--ceEEcCCccEEeCCc--
Q psy810          113 -PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG------------D--SVVQKPDIKRLLQDS--  175 (227)
Q Consensus       113 -~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~------------~--~i~~~~~i~~~~~~~--  175 (227)
                       ...+.+++++|||+|++|+|+|..+.+.+.+||++++.+..+...++            .  ++.....+.++..++  
T Consensus       142 ~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~~~~~v  221 (449)
T 3kd9_A          142 YMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERV  221 (449)
T ss_dssp             HHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEECSSSC
T ss_pred             HHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEeccCcE
Confidence             12236789999999999999999999999999999996543322121            1  233456777886543  


Q ss_pred             -eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          176 -VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       176 -v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                       ..+.+|+++++|.||+|+| +.|++  ++++..|++++..
T Consensus       222 ~~v~~~g~~i~~D~Vv~a~G-~~p~~--~l~~~~gl~~~~~  259 (449)
T 3kd9_A          222 EKVVTDAGEYKAELVILATG-IKPNI--ELAKQLGVRIGET  259 (449)
T ss_dssp             CEEEETTEEEECSEEEECSC-EEECC--HHHHHTTCCBCTT
T ss_pred             EEEEeCCCEEECCEEEEeeC-CccCH--HHHHhCCccCCCC
Confidence             3566888899999999999 99999  8999999988753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.77  E-value=2.7e-19  Score=159.18  Aligned_cols=130  Identities=15%  Similarity=0.283  Sum_probs=98.0

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..+.||+||+|||+  .|..|++||.+.    .++..++.....  +++++|||+|++|+|+|..|.+.+.+||++++.
T Consensus       137 ~~~~~~d~lViAtGs--~p~~p~i~G~~~----~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  208 (500)
T 1onf_A          137 EEILEGRNILIAVGN--KPVFPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG  208 (500)
T ss_dssp             ----CBSSEEECCCC--CBCCCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             ceEEEeCEEEECCCC--CCCCCCCCCCCc----ccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecC
Confidence            567999999999999  889999999742    344444433333  789999999999999999999999999999996


Q ss_pred             CccccccCC-------------C--ceEEcCCccEEeCC-----ceEEcCCCE-EeccEEEEccccccccccccc--cCC
Q psy810          151 SVAFKHQIG-------------D--SVVQKPDIKRLLQD-----SVVFQDDTS-HPFDSIIYCTGAYKYSYKLTF--LAT  207 (227)
Q Consensus       151 ~~~~~~~~~-------------~--~i~~~~~i~~~~~~-----~v~~~~g~~-i~~D~vi~atG~~~~~~~~~~--l~~  207 (227)
                      +..+. .++             .  ++..+..+.++..+     .+.+.+|++ +++|.||+|+| ++||+  ++  ++.
T Consensus       209 ~~~l~-~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G-~~p~~--~~l~~~~  284 (500)
T 1onf_A          209 NRILR-KFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVG-RSPDT--ENLKLEK  284 (500)
T ss_dssp             SSSCT-TSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCC-BCCTT--TTSSCTT
T ss_pred             CccCc-ccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCC-CCcCC--CCCCchh
Confidence            54332 122             1  33445678888642     367788988 99999999999 99998  75  578


Q ss_pred             ccccc
Q psy810          208 FSISM  212 (227)
Q Consensus       208 ~gl~~  212 (227)
                      .|+++
T Consensus       285 ~g~~~  289 (500)
T 1onf_A          285 LNVET  289 (500)
T ss_dssp             TTCCB
T ss_pred             cCccc
Confidence            88887

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.77  E-value=6.6e-19  Score=148.49  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=120.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEE-ecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHF-ANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v-~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .++++++++ |.+++.    .+.|.+ .+.++..+.||+||+|||+  .|..|++||.+.+.+..+|.+...+.....++
T Consensus        84 ~~v~~~~~~-v~~i~~----~~~~~v~~~~~g~~~~~d~lviAtG~--~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  156 (335)
T 2a87_A           84 FGADLRMED-VESVSL----HGPLKSVVTADGQTHRARAVILAMGA--AARYLQVPGEQELLGRGVSSCATCDGFFFRDQ  156 (335)
T ss_dssp             TTCEEECCC-EEEEEC----SSSSEEEEETTSCEEEEEEEEECCCE--EECCCCCTHHHHTBTTTEESCHHHHGGGGTTC
T ss_pred             cCCEEEEee-EEEEEe----CCcEEEEEeCCCCEEEeCEEEECCCC--CccCCCCCchHhccCCceEEeeccchhhcCCC
Confidence            356777776 777764    256777 7777778999999999999  78888999876555455665433333334689


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCcccc-c----c-C-CCceEE--cCCccEEeCCc----eEEc---CC--
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK-H----Q-I-GDSVVQ--KPDIKRLLQDS----VVFQ---DD--  181 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~-~----~-~-~~~i~~--~~~i~~~~~~~----v~~~---~g--  181 (227)
                      +|+|||+|.+|+|+|..|.+.+.+|++++|++.... .    . + ..+|++  +..+.++..++    +.+.   +|  
T Consensus       157 ~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~  236 (335)
T 2a87_A          157 DIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAE  236 (335)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCce
Confidence            999999999999999999999999999998643211 0    1 1 234544  44677776543    7775   45  


Q ss_pred             CEEeccEEEEccccccccccccccCCccccccc
Q psy810          182 TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       182 ~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      .++++|.||+|+| ++|++  ++++ .+++++.
T Consensus       237 ~~i~~D~vi~a~G-~~p~~--~~~~-~~l~~~~  265 (335)
T 2a87_A          237 TTLPVTGVFVAIG-HEPRS--GLVR-EAIDVDP  265 (335)
T ss_dssp             EEECCSCEEECSC-EEECC--TTTB-TTBCBCT
T ss_pred             EEeecCEEEEccC-CccCh--hHhh-cccccCC
Confidence            4689999999999 99999  8887 4677653

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.77  E-value=2.5e-19  Score=149.29  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=122.8

Q ss_pred             CchhhhhhhcCCCCCC---chhhhhhcCCcceEeeecccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEc
Q psy810            6 SCLPSVLTTYNSEALQ---PIRKLRESQPTNFISIAFIPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLP   82 (227)
Q Consensus         6 ~~~p~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilA   82 (227)
                      ||+|++...++-..+.   ...++.......+..    ....+. ..++..+..   ..+.+.+.+.++..+.||+||||
T Consensus        45 G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~----~~~~~~-~~~v~~~~~---~~~~~~~~~~~~~~~~~~~liiA  116 (314)
T 4a5l_A           45 GQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEK----YGTTII-TETIDHVDF---STQPFKLFTEEGKEVLTKSVIIA  116 (314)
T ss_dssp             CGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHH----TTCEEE-CCCEEEEEC---SSSSEEEEETTCCEEEEEEEEEC
T ss_pred             CCcCChHHhhhccCCcccCCHHHHHHHHHHHHhh----cCcEEE-EeEEEEeec---CCCceEEEECCCeEEEEeEEEEc
Confidence            8999887766532221   112332221111111    222333 334444332   23567777788889999999999


Q ss_pred             cCCCCCCCCCCCCCCCcccceeeecCCCCCCC--CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc----
Q psy810           83 SSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH----  156 (227)
Q Consensus        83 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~----  156 (227)
                      ||+  .|+.|++||.+.+.+..++++.+++..  .+++++++|||+|++|+|+|..|+++|.+||+++|.......    
T Consensus       117 TG~--~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~  194 (314)
T 4a5l_A          117 TGA--TAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQ  194 (314)
T ss_dssp             CCE--EECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHH
T ss_pred             ccc--cccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhh
Confidence            999  889999999876655556655444332  246899999999999999999999999999999985432110    


Q ss_pred             ---cCCCceEE--cCCccEEeC-----CceEE-----cCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          157 ---QIGDSVVQ--KPDIKRLLQ-----DSVVF-----QDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       157 ---~~~~~i~~--~~~i~~~~~-----~~v~~-----~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                         .....+..  ...+.++..     +++.+     .+++.+++|.|++|+| .+||+  .+|.. +++++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G-~~pn~--~~l~~-~~~~~~  263 (314)
T 4a5l_A          195 ERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIG-HSPNS--KFLGG-QVKTAD  263 (314)
T ss_dssp             HHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC-EEESC--GGGTT-SSCBCT
T ss_pred             hhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecc-cccCh--hHhcc-cceEcC
Confidence               00112221  122223321     12333     2445789999999999 99999  88864 355543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.77  E-value=2.2e-19  Score=158.13  Aligned_cols=157  Identities=8%  Similarity=0.082  Sum_probs=111.9

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      ++++++++.+. +     +.+.+.+.+.++  ..+.||+||+|||+  .|..|+++|.+.   ..+++.+...... .++
T Consensus       105 gv~~~~g~~~~-i-----d~~~v~V~~~~G~~~~~~~d~lViAtG~--~~~~~~~~g~~~---~~~~~~~~~~~~~-~~~  172 (464)
T 2a8x_A          105 KITEIHGYGTF-A-----DANTLLVDLNDGGTESVTFDNAIIATGS--STRLVPGTSLSA---NVVTYEEQILSRE-LPK  172 (464)
T ss_dssp             TCEEECEEEEE-S-----SSSEEEEEETTSCCEEEEEEEEEECCCE--EECCCTTCCCBT---TEECHHHHHTCSS-CCS
T ss_pred             CCEEEEeEEEE-e-----cCCeEEEEeCCCceEEEEcCEEEECCCC--CCCCCCCCCCCc---eEEecHHHhhccc-cCC
Confidence            45666555432 1     225677776666  68999999999999  788888888653   1344333322222 478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC--c--eEEc-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD--S--VVFQ-  179 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~--~--v~~~-  179 (227)
                      +++|||+|.+|+|+|..|.+.+.+||++++.+..+. .++             .  ++..+..+.++..+  .  +.+. 
T Consensus       173 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  251 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTK  251 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEES
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEc
Confidence            999999999999999999999999999999654332 122             1  33445567777643  2  4444 


Q ss_pred             CC--CEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 DD--TSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 ~g--~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                      +|  .++++|.||+|+| ++||+  .+  ++..|++++.
T Consensus       252 ~g~~~~~~~D~vv~a~G-~~p~~--~~l~~~~~gl~~~~  287 (464)
T 2a8x_A          252 DGVAQELKAEKVLQAIG-FAPNV--EGYGLDKAGVALTD  287 (464)
T ss_dssp             SSCEEEEEESEEEECSC-EEECC--SSSCHHHHTCCBCT
T ss_pred             CCceEEEEcCEEEECCC-CCccC--CCCCchhcCCccCC
Confidence            66  5689999999999 99999  88  6777888764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.77  E-value=4e-19  Score=156.67  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=107.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .+++++.++.+. ++       .+.+... +..+.||+||+|||+  .|..|+ +++. .   ..+++.+........++
T Consensus       106 ~gv~~~~g~~~~-~~-------~~~v~v~-g~~~~~d~lViATGs--~p~~p~gi~~~-~---~v~~~~~~~~l~~~~~~  170 (464)
T 2eq6_A          106 NGVELLRGFARL-VG-------PKEVEVG-GERYGAKSLILATGS--EPLELKGFPFG-E---DVWDSTRALKVEEGLPK  170 (464)
T ss_dssp             TTCEEEESCEEE-EE-------TTEEEET-TEEEEEEEEEECCCE--EECCBTTBCCS-S---SEECHHHHTCGGGCCCS
T ss_pred             CCCEEEeeeEEE-cc-------CCEEEEc-cEEEEeCEEEEcCCC--CCCCCCCCCCC-C---cEEcHHHHHhhhhhcCC
Confidence            356666665432 22       1234444 467999999999999  788776 6662 1   23444444333333478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------CceE--EcCCccEEeCC--c--eEEc-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQD--S--VVFQ-  179 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~--~--v~~~-  179 (227)
                      +++|||+|.+|+|+|..|++.|.+||++++.+..+. .++             .+|.  .+..+.++..+  .  +.+. 
T Consensus       171 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  249 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEP  249 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEee
Confidence            999999999999999999999999999999654332 121             1333  34567777542  2  5565 


Q ss_pred             C--CC--EEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 D--DT--SHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 ~--g~--~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                      +  |+  ++++|.||+|+| ++|++  .+  ++..|++++.
T Consensus       250 ~~~g~~~~i~~D~vv~a~G-~~p~~--~~l~l~~~g~~~~~  287 (464)
T 2eq6_A          250 AEGGEGEEVVVDKVLVAVG-RKPRT--EGLGLEKAGVKVDE  287 (464)
T ss_dssp             TTCCSCEEEEESEEEECSC-EEESC--TTSSHHHHTCCBCT
T ss_pred             cCCCceeEEEcCEEEECCC-cccCC--CCCChhhcCceecC
Confidence            6  77  799999999999 99999  76  4677887753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.77  E-value=1.2e-18  Score=152.94  Aligned_cols=163  Identities=14%  Similarity=0.193  Sum_probs=117.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCC--
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDP--  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~--  115 (227)
                      .+++++++++|..++...   ..+.+..   +++..+.||+||+|||+  .|..|++||.+. . ..++...+.+..+  
T Consensus        71 ~gv~~~~~~~v~~i~~~~---~~v~v~~~~~g~~~~~~~d~lviAtGs--~p~~p~i~g~~~-~-~v~~~~~~~~~~~~~  143 (452)
T 2cdu_A           71 LGANVQMRHQVTNVDPET---KTIKVKDLITNEEKTEAYDKLIMTTGS--KPTVPPIPGIDS-S-RVYLCKNYNDAKKLF  143 (452)
T ss_dssp             TTCEEEESEEEEEEEGGG---TEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTS-T-TEEECSSHHHHHHHH
T ss_pred             cCCEEEeCCEEEEEEcCC---CEEEEEecCCCceEEEECCEEEEccCC--CcCCCCCCCCCC-C-CEEEeCcHHHHHHHH
Confidence            456788888888876422   3444443   22578999999999999  889999999753 2 1333322222111  


Q ss_pred             ---CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeC-Cc-
Q psy810          116 ---FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ-DS-  175 (227)
Q Consensus       116 ---~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~-~~-  175 (227)
                         ..+++++|||+|.+|+|+|..|.+.+.+||++++.+..+...++               -++..+..+.++.. ++ 
T Consensus       144 ~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~  223 (452)
T 2cdu_A          144 EEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDE  223 (452)
T ss_dssp             HHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTE
T ss_pred             HHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCe
Confidence               24789999999999999999999999999999996544332222               14445667888864 32 


Q ss_pred             e--EEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 V--VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 v--~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +  ...+|+++++|.||+|+| ++||+  .+++.. ++++.
T Consensus       224 v~~v~~~g~~i~~D~vv~a~G-~~p~~--~ll~~~-l~~~~  260 (452)
T 2cdu_A          224 IITKTLDGKEIKSDIAILCIG-FRPNT--ELLKGK-VAMLD  260 (452)
T ss_dssp             EEEEETTSCEEEESEEEECCC-EEECC--GGGTTT-SCBCT
T ss_pred             EEEEEeCCCEEECCEEEECcC-CCCCH--HHHHHh-hhcCC
Confidence            3  334788999999999999 99999  888877 77754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.77  E-value=6.8e-19  Score=152.92  Aligned_cols=162  Identities=19%  Similarity=0.148  Sum_probs=123.3

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----  114 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----  114 (227)
                      ..+++++++++|..++.     ..+.+.+.++..+.||+||+|||+  .|..|++||.+.. + ........+..     
T Consensus        77 ~~~i~~~~~~~v~~id~-----~~~~v~~~~g~~~~~d~lvlAtG~--~~~~~~i~g~~~~-~-v~~~~~~~d~~~l~~~  147 (415)
T 3lxd_A           77 DKAVEMKLGAEVVSLDP-----AAHTVKLGDGSAIEYGKLIWATGG--DPRRLSCVGADLA-G-VHAVRTKEDADRLMAE  147 (415)
T ss_dssp             HTTEEEEETCCEEEEET-----TTTEEEETTSCEEEEEEEEECCCE--ECCCCBTTSSCCB-T-EECCCSHHHHHHHHHH
T ss_pred             HCCcEEEeCCEEEEEEC-----CCCEEEECCCCEEEeeEEEEccCC--ccCCCCCCCcccc-C-EEEEcCHHHHHHHHHH
Confidence            34678888999998875     456777778889999999999999  8899999997531 1 11111111111     


Q ss_pred             CCC-CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeCC----
Q psy810          115 PFR-DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQD----  174 (227)
Q Consensus       115 ~~~-~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~~----  174 (227)
                      ... +++++|||+|++|+|+|..+.+.+.+||++++.+..+...++               -++..+..+.++..+    
T Consensus       148 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v  227 (415)
T 3lxd_A          148 LDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV  227 (415)
T ss_dssp             HHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBE
T ss_pred             hhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcE
Confidence            112 789999999999999999999999999999996544332222               144456778888643    


Q ss_pred             -ceEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          175 -SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       175 -~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                       +|.+.+|+++++|.||+|+| +.|++  .+++..|++++
T Consensus       228 ~~v~l~dG~~i~aD~Vv~a~G-~~p~~--~l~~~~gl~~~  264 (415)
T 3lxd_A          228 TGVRMQDGSVIPADIVIVGIG-IVPCV--GALISAGASGG  264 (415)
T ss_dssp             EEEEESSSCEEECSEEEECSC-CEESC--HHHHHTTCCCS
T ss_pred             EEEEeCCCCEEEcCEEEECCC-CccCh--HHHHhCCCCcC
Confidence             47889999999999999999 99999  99998888876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.77  E-value=8.3e-19  Score=147.18  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=123.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC--C
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--P  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~  115 (227)
                      .++++++++ |.+++..   .+.|.+.+   +++..+.||+||+|||+  .|..|++||.+.+.+..++++.+++..  .
T Consensus        97 ~gv~i~~~~-v~~i~~~---~~~~~v~~~~~~~~~~~~~d~vvlAtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  170 (338)
T 3itj_A           97 FGTEIITET-VSKVDLS---SKPFKLWTEFNEDAEPVTTDAIILATGA--SAKRMHLPGEETYWQKGISACAVCDGAVPI  170 (338)
T ss_dssp             TTCEEECSC-EEEEECS---SSSEEEEETTCSSSCCEEEEEEEECCCE--EECCCCCTTHHHHBTTTEESCHHHHTTSGG
T ss_pred             cCCEEEEeE-EEEEEEc---CCEEEEEEEecCCCcEEEeCEEEECcCC--CcCCCCCCCchhccCccEEEchhcccchhh
Confidence            356778877 8887752   36677766   35678999999999999  788999999876655556655444433  4


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cC-C-CceEE--cCCccEEeCCc-----eEEcC-
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QI-G-DSVVQ--KPDIKRLLQDS-----VVFQD-  180 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~-~-~~i~~--~~~i~~~~~~~-----v~~~~-  180 (227)
                      +.+++++|||+|.+|+|+|..|.+.+.+|+++++.+.....     .+ . .+|++  ...+.++..++     +++.+ 
T Consensus       171 ~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~  250 (338)
T 3itj_A          171 FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNT  250 (338)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEET
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEEC
Confidence            56899999999999999999999999999999996532210     11 1 24554  44677776543     77766 


Q ss_pred             ----CCEEeccEEEEccccccccccccccCCccccccc
Q psy810          181 ----DTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       181 ----g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                          +.++++|.||+|+| +.|+.  .++.. +++++.
T Consensus       251 ~~g~~~~i~~D~vi~a~G-~~p~~--~~~~~-~l~~~~  284 (338)
T 3itj_A          251 KKNEETDLPVSGLFYAIG-HTPAT--KIVAG-QVDTDE  284 (338)
T ss_dssp             TTTEEEEEECSEEEECSC-EEECC--GGGBT-TBCBCT
T ss_pred             CCCceEEEEeCEEEEEeC-CCCCh--hHhhC-ceEecC
Confidence                35689999999999 99999  88887 888774

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.76  E-value=9.1e-19  Score=157.62  Aligned_cols=164  Identities=10%  Similarity=0.097  Sum_probs=120.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~----  113 (227)
                      .+++++++++|.+++.   ....+.+..   ++...+.||+||+|||+  .|..|++||.+...  .++.....+.    
T Consensus        71 ~~i~~~~~~~V~~id~---~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~ipG~~~~~--v~~~~~~~~~~~l~  143 (565)
T 3ntd_A           71 FNVEVRVKHEVVAIDR---AAKLVTVRRLLDGSEYQESYDTLLLSPGA--APIVPPIPGVDNPL--THSLRNIPDMDRIL  143 (565)
T ss_dssp             HCCEEETTEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTCCSTT--EECCSSHHHHHHHH
T ss_pred             cCcEEEECCEEEEEEC---CCCEEEEEecCCCCeEEEECCEEEECCCC--CCCCCCCCCCCCCC--EEEeCCHHHHHHHH
Confidence            4567888999999875   224455543   34458999999999999  88999999975422  1222211111    


Q ss_pred             ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--
Q psy810          114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--  173 (227)
Q Consensus       114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--  173 (227)
                         ....+++|+|||+|++|+|+|..|.+.+.+||++++.+..+. .++             .  ++.....+.++..  
T Consensus       144 ~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~  222 (565)
T 3ntd_A          144 QTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV  222 (565)
T ss_dssp             HHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEEC
T ss_pred             HHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccc
Confidence               113478999999999999999999999999999999654332 121             1  3344566777754  


Q ss_pred             ------------------C---ceEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          174 ------------------D---SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       174 ------------------~---~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                                        +   .+.+.+|+++++|.||+|+| +.|++  .+++..|++++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G-~~p~~--~l~~~~g~~~~~~  282 (565)
T 3ntd_A          223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIG-VRPET--QLARDAGLAIGEL  282 (565)
T ss_dssp             CCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSC-EEECC--HHHHHHTCCBCTT
T ss_pred             cccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcC-Cccch--HHHHhCCcccCCC
Confidence                              2   26678899999999999999 99999  8888888888753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.76  E-value=2.8e-19  Score=157.59  Aligned_cols=138  Identities=19%  Similarity=0.224  Sum_probs=102.1

Q ss_pred             EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeE
Q psy810           65 HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNV  144 (227)
Q Consensus        65 ~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~V  144 (227)
                      .+.. ++..+.||+||+|||+  .|..|++||.+.    .++..++..... .+++++|||+|.+|+|+|..|.+.|.+|
T Consensus       121 ~v~~-~g~~~~~d~lviAtGs--~p~~p~i~G~~~----~~~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~V  192 (463)
T 2r9z_A          121 TIEV-EGQRLSADHIVIATGG--RPIVPRLPGAEL----GITSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEV  192 (463)
T ss_dssp             EEEE-TTEEEEEEEEEECCCE--EECCCSCTTGGG----SBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred             EEEE-CCEEEEcCEEEECCCC--CCCCCCCCCccc----eecHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEE
Confidence            4554 4467999999999999  889999998642    222222222222 3689999999999999999999999999


Q ss_pred             EEEeecCccccccCC-------------Cce--EEcCCccEEeCC----ceEEcCCC-EEeccEEEEccccccccccccc
Q psy810          145 FLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQD----SVVFQDDT-SHPFDSIIYCTGAYKYSYKLTF  204 (227)
Q Consensus       145 tli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~----~v~~~~g~-~i~~D~vi~atG~~~~~~~~~~  204 (227)
                      |++++.+..+.. ++             ..|  ..+..+.++..+    .+++.+|+ ++++|.||+|+| ++|++  ++
T Consensus       193 tlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G-~~p~~--~~  268 (463)
T 2r9z_A          193 TVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVG-RAPNT--RD  268 (463)
T ss_dssp             EEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSC-EEESC--TT
T ss_pred             EEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCC-CCcCC--CC
Confidence            999996543321 21             133  345567777642    37788998 899999999999 99999  85


Q ss_pred             c--CCccccccc
Q psy810          205 L--ATFSISMAM  214 (227)
Q Consensus       205 l--~~~gl~~~~  214 (227)
                      |  +..|++++.
T Consensus       269 l~~~~~g~~~~~  280 (463)
T 2r9z_A          269 LGLEAAGIEVQS  280 (463)
T ss_dssp             SCHHHHTCCCCT
T ss_pred             CCchhcCCccCC
Confidence            4  667888764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.76  E-value=4.6e-19  Score=158.48  Aligned_cols=158  Identities=9%  Similarity=0.058  Sum_probs=115.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC-CCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR-VPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~  119 (227)
                      .+++++++.++..++.       +.+... +..+.||+||+|||+  .|..|++||.+.. + +++..++. ......++
T Consensus       148 ~gv~~~~~~~v~~i~~-------~~v~~~-g~~~~~d~lViATGs--~p~~p~i~G~~~~-~-v~~~~~~~~~l~~~~g~  215 (523)
T 1mo9_A          148 LNLEYILNCPAKVIDN-------HTVEAA-GKVFKAKNLILAVGA--GPGTLDVPGVNAK-G-VFDHATLVEELDYEPGS  215 (523)
T ss_dssp             SCCCEEESSCCEEEET-------TEEEET-TEEEEBSCEEECCCE--ECCCCCSTTTTSB-T-EEEHHHHHHHCCSCCCS
T ss_pred             CCcEEEEeeEEEEeeC-------CEEEEC-CEEEEeCEEEECCCC--CCCCCCCCCcccC-c-EeeHHHHHHHHHhcCCC
Confidence            3456665677776652       234444 467999999999999  8899999997541 1 33433333 33333459


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--Cc------e
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--DS------V  176 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~~------v  176 (227)
                      +++|||+|.+|+|+|..+.+.+.+||++++.+..+.. ++             .  ++..+..|.++..  ++      +
T Consensus       216 ~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v  294 (523)
T 1mo9_A          216 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA  294 (523)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEE
Confidence            9999999999999999999999999999996543321 21             1  3334556777753  33      5


Q ss_pred             EEcCCC-EEeccEEEEcccccccccccc-ccCCccccccc
Q psy810          177 VFQDDT-SHPFDSIIYCTGAYKYSYKLT-FLATFSISMAM  214 (227)
Q Consensus       177 ~~~~g~-~i~~D~vi~atG~~~~~~~~~-~l~~~gl~~~~  214 (227)
                      ++.+|+ ++++|.||+|+| +.||+  . +|+..|++++.
T Consensus       295 ~~~~G~~~i~aD~Vv~A~G-~~p~~--~~~l~~~gl~~~~  331 (523)
T 1mo9_A          295 MTPNGEMRIETDFVFLGLG-EQPRS--AELAKILGLDLGP  331 (523)
T ss_dssp             EETTEEEEEECSCEEECCC-CEECC--HHHHHHHTCCBCT
T ss_pred             EECCCcEEEEcCEEEECcC-CccCC--ccCHHHcCCccCC
Confidence            667887 899999999999 99999  7 89999998864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.76  E-value=2.7e-18  Score=144.21  Aligned_cols=163  Identities=12%  Similarity=0.139  Sum_probs=118.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCc----ccceeeecCCCCCCCC-
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADL----FRGLQMHSHDYRVPDP-  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~----~~~~~~~~~~~~~~~~-  115 (227)
                      .++++++++ |..++..   .+.|.+.+ ++..+.||+||+|||+  .|..|++||.+.    +.+..+|.+...+... 
T Consensus        83 ~gv~~~~~~-v~~i~~~---~~~~~v~~-~~~~~~~~~vv~A~G~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (333)
T 1vdc_A           83 FGTTIFTET-VTKVDFS---SKPFKLFT-DSKAILADAVILAIGA--VAKRLSFVGSGEVLGGFWNRGISACAVCDGAAP  155 (333)
T ss_dssp             TTCEEECCC-CCEEECS---SSSEEEEC-SSEEEEEEEEEECCCE--EECCCCCBTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred             CCCEEEEeE-EEEEEEc---CCEEEEEE-CCcEEEcCEEEECCCC--CcCCCCCCCccccccccccCcEEEeccCccchh
Confidence            356777765 7777642   25688888 5678999999999999  678889998765    4444555443333322 


Q ss_pred             -CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccc------ccC-CCceEE--cCCccEEeCCc-------eEE
Q psy810          116 -FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK------HQI-GDSVVQ--KPDIKRLLQDS-------VVF  178 (227)
Q Consensus       116 -~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~------~~~-~~~i~~--~~~i~~~~~~~-------v~~  178 (227)
                       ..+++|+|||+|.+|+|+|..|.+.+.+|+++++++....      ..+ ..+|++  ...+.++..++       +.+
T Consensus       156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~  235 (333)
T 1vdc_A          156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKV  235 (333)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEE
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEE
Confidence             5689999999999999999999999999999999643210      111 234554  44677775432       777


Q ss_pred             c---CC--CEEeccEEEEccccccccccccccCCccccccc
Q psy810          179 Q---DD--TSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       179 ~---~g--~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      .   +|  .++++|.||+|+| ++|++  .+++ .+++++.
T Consensus       236 ~~~~~g~~~~i~~D~vi~a~G-~~p~~--~~~~-~~l~~~~  272 (333)
T 1vdc_A          236 KNVVTGDVSDLKVSGLFFAIG-HEPAT--KFLD-GGVELDS  272 (333)
T ss_dssp             EETTTCCEEEEECSEEEECSC-EEESC--GGGT-TSSCBCT
T ss_pred             EecCCCceEEEecCEEEEEeC-Cccch--HHhh-ccccccC
Confidence            5   45  4689999999999 99999  8887 4676653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.76  E-value=3.1e-18  Score=152.20  Aligned_cols=163  Identities=10%  Similarity=0.079  Sum_probs=115.3

Q ss_pred             ceeEEeCceEEEEEEee-CCCCcEEEecCCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFS-VPTKCLHFANEEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRD  118 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~-~~~~~~~v~~~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~  118 (227)
                      +++++.++ +..++... ...+.+.+.+.++.  .+.||++|+|||+  .|..|+++|.+..  ..++..+..+... .+
T Consensus       109 gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs--~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~  182 (499)
T 1xdi_A          109 GVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA--SPRILPSAQPDGE--RILTWRQLYDLDA-LP  182 (499)
T ss_dssp             TCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE--EECCCGGGCCCSS--SEEEGGGGGGCSS-CC
T ss_pred             CCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC--CCCCCCCCCCCcC--cEEehhHhhhhhc-cC
Confidence            45666664 44433100 00134566665554  7999999999999  8899999987542  1344443333333 46


Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc----eEEc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS----VVFQ  179 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~----v~~~  179 (227)
                      ++++|||+|.+|+|+|..+.+.+.+||++++.+..+.. ++             .  ++..+..|.++..++    +.+.
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~  261 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMT  261 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEET
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEC
Confidence            89999999999999999999999999999996543321 21             1  334456788886432    4556


Q ss_pred             CCCEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 DDTSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 ~g~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                      +|+++++|.||+|+| +.||+  .+  |+..|++++.
T Consensus       262 ~g~~i~aD~Vv~a~G-~~p~~--~~l~l~~~gl~~~~  295 (499)
T 1xdi_A          262 DGRTVEGSHALMTIG-SVPNT--SGLGLERVGIQLGR  295 (499)
T ss_dssp             TSCEEEESEEEECCC-EEECC--SSSCTTTTTCCCBT
T ss_pred             CCcEEEcCEEEECCC-CCcCC--CcCCchhcCceECC
Confidence            888999999999999 99999  88  7888888875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.76  E-value=5.3e-19  Score=156.50  Aligned_cols=139  Identities=8%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             eEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810           72 TLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus        72 ~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+.||+||+|||+  .|..|+ ++. +.   ..+++.+...... .+++++|||||.+|+|+|..|.+.|.+||++++.
T Consensus       145 ~~i~ad~lViAtGs--~p~~~~~i~~-~~---~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~  217 (482)
T 1ojt_A          145 KIVAFKNCIIAAGS--RVTKLPFIPE-DP---RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM  217 (482)
T ss_dssp             EEEEEEEEEECCCE--EECCCSSCCC-CT---TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             eEEEcCEEEECCCC--CCCCCCCCCc-cC---cEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEEC
Confidence            67999999999999  677776 552 22   2344443333333 3789999999999999999999999999999996


Q ss_pred             CccccccCC-------------CceE--EcCCccEEeCC----ceEEcC----CCEEeccEEEEccccccccccccc--c
Q psy810          151 SVAFKHQIG-------------DSVV--QKPDIKRLLQD----SVVFQD----DTSHPFDSIIYCTGAYKYSYKLTF--L  205 (227)
Q Consensus       151 ~~~~~~~~~-------------~~i~--~~~~i~~~~~~----~v~~~~----g~~i~~D~vi~atG~~~~~~~~~~--l  205 (227)
                      +..+. .++             ..|.  .+..+.++..+    .+++.+    |+++++|.||+|+| ++||+  .+  +
T Consensus       218 ~~~l~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G-~~p~~--~~l~~  293 (482)
T 1ojt_A          218 DGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG-RAPNG--KLISA  293 (482)
T ss_dssp             SSSST-TSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC-EEECG--GGTTG
T ss_pred             Ccccc-ccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcC-CCcCC--CCCCh
Confidence            54332 122             1333  34567777542    266766    77899999999999 99999  87  5


Q ss_pred             CCcccccccCCCCCCCCCC
Q psy810          206 ATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       206 ~~~gl~~~~~~~~~~~~~~  224 (227)
                      +..|++++..   |.+.+.
T Consensus       294 ~~~gl~~~~~---G~i~vd  309 (482)
T 1ojt_A          294 EKAGVAVTDR---GFIEVD  309 (482)
T ss_dssp             GGTTCCCCTT---SCCCCC
T ss_pred             hhcCceeCCC---CCEeeC
Confidence            8888888753   545443

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.76  E-value=3.7e-19  Score=157.26  Aligned_cols=158  Identities=7%  Similarity=0.045  Sum_probs=109.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCe--eE------EEcCEEEEccCCCCCCCCCCCCCCCcccc-eeeecCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TL------HYNLLQSLPSSHNSVPNIPSYEGADLFRG-LQMHSHDYR  111 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~------~~~~~vilAtG~~~~p~~p~~~g~~~~~~-~~~~~~~~~  111 (227)
                      .++++++++.+..      +.+.+.+.+.++  ..      +.||+||+|||+  .|.  .+||.+. .+ ..++..+..
T Consensus       109 ~gv~~~~g~~~~~------~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs--~p~--~~~g~~~-~~~~v~~~~~~~  177 (478)
T 1v59_A          109 NKVTYYKGNGSFE------DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGS--EVT--PFPGIEI-DEEKIVSSTGAL  177 (478)
T ss_dssp             TTCEEEESEEEES------SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCE--EEC--CCTTCCC-CSSSEECHHHHT
T ss_pred             CCCEEEEEEEEEc------cCCeEEEEecCCCcccccccceEEeCEEEECcCC--CCC--CCCCCCC-CCceEEcHHHHH
Confidence            3566776665431      225677776554  45      999999999999  553  4455432 22 234433333


Q ss_pred             CCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------CceE--EcCCccEEeC--C
Q psy810          112 VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQ--D  174 (227)
Q Consensus       112 ~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~--~  174 (227)
                      .... .+++++|||+|.+|+|+|..|++.|.+||++++.+..+. .++             .+|+  .+..+.++..  +
T Consensus       178 ~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~  255 (478)
T 1v59_A          178 SLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDD  255 (478)
T ss_dssp             TCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETT
T ss_pred             hhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecC
Confidence            3333 479999999999999999999999999999999654332 222             1333  3456777764  2


Q ss_pred             ----ceEEc-----CCCEEeccEEEEcccccccccccc--ccCCccccccc
Q psy810          175 ----SVVFQ-----DDTSHPFDSIIYCTGAYKYSYKLT--FLATFSISMAM  214 (227)
Q Consensus       175 ----~v~~~-----~g~~i~~D~vi~atG~~~~~~~~~--~l~~~gl~~~~  214 (227)
                          .+.+.     ++.++++|.||+|+| ++||+  .  +|++.|++++.
T Consensus       256 ~~~~~v~~~~~~~g~~~~~~~D~vv~a~G-~~p~~--~~l~l~~~g~~~~~  303 (478)
T 1v59_A          256 KNVVEIVVEDTKTNKQENLEAEVLLVAVG-RRPYI--AGLGAEKIGLEVDK  303 (478)
T ss_dssp             TTEEEEEEEETTTTEEEEEEESEEEECSC-EEECC--TTSCTTTTTCCBCT
T ss_pred             CCeEEEEEEEcCCCCceEEECCEEEECCC-CCcCC--CCCCchhcCceeCC
Confidence                25555     346799999999999 99999  8  88999998874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.76  E-value=3e-19  Score=156.98  Aligned_cols=143  Identities=10%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      ..+.+.+ ++..+.||+||+|||+  .|..|+++|.+..  ..++..+...... .+++++|||+|.+|+|+|..|.+.+
T Consensus       117 ~~~~v~~-~g~~~~~d~lviAtG~--~p~~~~~~g~~~~--~v~~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g  190 (455)
T 2yqu_A          117 RKVLVEE-TGEELEARYILIATGS--APLIPPWAQVDYE--RVVTSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLG  190 (455)
T ss_dssp             SEEEETT-TCCEEEEEEEEECCCE--EECCCTTBCCCSS--SEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CeEEEee-CCEEEEecEEEECCCC--CCCCCCCCCCCcC--cEechHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcC
Confidence            4566665 5578999999999999  8888888886431  2344443333333 4689999999999999999999999


Q ss_pred             CeEEEEeecCccccccCC---------------CceEEcCCccEEeC--Cc--eEEcCCCEEeccEEEEccccccccccc
Q psy810          142 KNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      .+|+++++.+..+.. ++               -++..+..+.++..  ++  +.+.+|+++++|.||+|+| ++|++  
T Consensus       191 ~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G-~~p~~--  266 (455)
T 2yqu_A          191 AEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVG-RRPYT--  266 (455)
T ss_dssp             CEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSC-EEECC--
T ss_pred             CEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcC-CCcCC--
Confidence            999999986543221 11               13444567877764  23  4556888999999999999 99999  


Q ss_pred             cc--cCCccccccc
Q psy810          203 TF--LATFSISMAM  214 (227)
Q Consensus       203 ~~--l~~~gl~~~~  214 (227)
                      ++  ++..|++++.
T Consensus       267 ~~l~~~~~g~~~~~  280 (455)
T 2yqu_A          267 EGLSLENAGLSTDE  280 (455)
T ss_dssp             TTCCGGGGTCCCCT
T ss_pred             CCCChhhcCCccCC
Confidence            87  6777888764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.76  E-value=3.8e-20  Score=164.34  Aligned_cols=151  Identities=13%  Similarity=0.164  Sum_probs=107.3

Q ss_pred             cEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810           63 CLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        63 ~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~  142 (227)
                      .+++.+.++..+.||+||||||+  .|..|++++...  ...++......... .+++++|||+|++|+|+|..|.+.+.
T Consensus       124 ~~~v~~~~~~~~~~d~lViATGs--~p~~p~~~~~~~--~~v~t~~~~~~~~~-~~k~vvViGgG~ig~E~A~~l~~~g~  198 (492)
T 3ic9_A          124 EHTLQVDDHSQVIAKRIVIATGS--RPNYPEFLAAAG--SRLLTNDNLFELND-LPKSVAVFGPGVIGLELGQALSRLGV  198 (492)
T ss_dssp             TTEEEETTTEEEEEEEEEECCCE--ECCCCHHHHTTG--GGEECHHHHTTCSS-CCSEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEcCCcEEEeCEEEEccCC--CCcCCCCCCccC--CcEEcHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCC
Confidence            35666666778999999999999  888888765331  12333333333332 47999999999999999999999999


Q ss_pred             eEEEEeecCccccc-----------cCCCceEE--cCCccEEeC--Cc--eEEc--CC--CEEeccEEEEcccccccccc
Q psy810          143 NVFLSHHISVAFKH-----------QIGDSVVQ--KPDIKRLLQ--DS--VVFQ--DD--TSHPFDSIIYCTGAYKYSYK  201 (227)
Q Consensus       143 ~Vtli~~~~~~~~~-----------~~~~~i~~--~~~i~~~~~--~~--v~~~--~g--~~i~~D~vi~atG~~~~~~~  201 (227)
                      +||++++.+..+..           .+..+|.+  +..+.++..  ++  +.+.  +|  .++++|.||+|+| ++||+ 
T Consensus       199 ~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G-~~p~~-  276 (492)
T 3ic9_A          199 IVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATG-RKANV-  276 (492)
T ss_dssp             EEEEECCTTCCTTCCCHHHHHHHHHHHHTTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSC-CEESC-
T ss_pred             eEEEEEECCcccccCCHHHHHHHHHHHhhCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeC-CccCC-
Confidence            99999996543221           01112444  456777754  23  4454  67  5689999999999 99999 


Q ss_pred             ccc--cCCcccccccCCCCCCCCCC
Q psy810          202 LTF--LATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       202 ~~~--l~~~gl~~~~~~~~~~~~~~  224 (227)
                       .+  ++..|++++..   |.+.+.
T Consensus       277 -~~l~l~~~gl~~~~~---G~i~vd  297 (492)
T 3ic9_A          277 -DKLGLENTSIELDKK---NSPLFD  297 (492)
T ss_dssp             -SSSCGGGSCCCBCTT---CCBCCC
T ss_pred             -CCCChhhcCCEECCC---CCEeEC
Confidence             88  78888888754   444443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.76  E-value=4.3e-18  Score=149.22  Aligned_cols=163  Identities=14%  Similarity=0.153  Sum_probs=114.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec-CCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~----  113 (227)
                      .+++++++++|..++..   .....+.. .++  ..+.||+||+|||+  .|..|++||.+. .+ +++...+.+.    
T Consensus        69 ~gv~~~~~~~v~~i~~~---~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~  141 (447)
T 1nhp_A           69 RGVNVFSNTEITAIQPK---EHQVTVKDLVSGEERVENYDKLIISPGA--VPFELDIPGKDL-DN-IYLMRGRQWAIKLK  141 (447)
T ss_dssp             TTCEEEETEEEEEEETT---TTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCSTTTTS-BS-EECCCHHHHHHHHH
T ss_pred             CCCEEEECCEEEEEeCC---CCEEEEEecCCCceEEEeCCEEEEcCCC--CcCCCCCCCCCC-CC-eEEECCHHHHHHHH
Confidence            35678888998887641   23444443 223  35899999999999  889999999753 22 3332222211    


Q ss_pred             ---CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCCc
Q psy810          114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQDS  175 (227)
Q Consensus       114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~~  175 (227)
                         ....+++++|||+|++|+|+|..+.+.+.+|+++++.+..+...++             .++  ..+..+.++..++
T Consensus       142 ~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~  221 (447)
T 1nhp_A          142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG  221 (447)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS
T ss_pred             HHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccC
Confidence               1125789999999999999999999999999999996543321121             233  4456788886543


Q ss_pred             -e--EEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 -V--VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 -v--~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       +  ...+|.++++|.||+|+| ++|++  ++++.. ++++.
T Consensus       222 ~v~~v~~~~~~i~~d~vi~a~G-~~p~~--~~~~~~-~~~~~  259 (447)
T 1nhp_A          222 RVQKVVTDKNAYDADLVVVAVG-VRPNT--AWLKGT-LELHP  259 (447)
T ss_dssp             BCCEEEESSCEEECSEEEECSC-EEESC--GGGTTT-SCBCT
T ss_pred             cEEEEEECCCEEECCEEEECcC-CCCCh--HHHHhh-hhhcC
Confidence             2  233677899999999999 99999  888877 77653

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.75  E-value=1.4e-18  Score=153.36  Aligned_cols=165  Identities=15%  Similarity=0.157  Sum_probs=119.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~----  113 (227)
                      .+++++++++|.+++.   ....+.+..   +....+.||+||+|||+  .|..|++||.+. .+ .++.....+.    
T Consensus        79 ~gi~~~~~~~V~~id~---~~~~v~~~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~  151 (472)
T 3iwa_A           79 KDVEALVETRAHAIDR---AAHTVEIENLRTGERRTLKYDKLVLALGS--KANRPPVEGMDL-AG-VTPVTNLDEAEFVQ  151 (472)
T ss_dssp             --CEEECSEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCSCTTTTS-BT-EEECCSHHHHHHHH
T ss_pred             cCcEEEECCEEEEEEC---CCCEEEEeecCCCCEEEEECCEEEEeCCC--CcCCCCCCCCCC-CC-EEEeCCHHHHHHHH
Confidence            4567888999998874   224555554   33448999999999999  889999999752 22 2222222111    


Q ss_pred             ---CCCCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeC-
Q psy810          114 ---DPFRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ-  173 (227)
Q Consensus       114 ---~~~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~-  173 (227)
                         ....+++++|||+|.+|+|+|..+.+. +.+||++++.+..+...++             .+|  ..+..|.++.. 
T Consensus       152 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  231 (472)
T 3iwa_A          152 HAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE  231 (472)
T ss_dssp             HHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEES
T ss_pred             HHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc
Confidence               112478999999999999999999999 9999999996543331222             133  34557888865 


Q ss_pred             Cc---eEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          174 DS---VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       174 ~~---v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                      ++   +.+.+|+++++|.||+|+| +.|++  .+++..|++++..
T Consensus       232 ~~~v~v~~~~g~~i~aD~Vv~a~G-~~p~~--~l~~~~gl~~~~~  273 (472)
T 3iwa_A          232 NGKVARVITDKRTLDADLVILAAG-VSPNT--QLARDAGLELDPR  273 (472)
T ss_dssp             SSBEEEEEESSCEEECSEEEECSC-EEECC--HHHHHHTCCBCTT
T ss_pred             CCeEEEEEeCCCEEEcCEEEECCC-CCcCH--HHHHhCCccCCCC
Confidence            33   6778999999999999999 99999  8888888888753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.75  E-value=7e-19  Score=151.37  Aligned_cols=160  Identities=14%  Similarity=0.059  Sum_probs=118.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-----C
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-----P  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-----~  115 (227)
                      .+++++++++|..++.     +.+.+.++++ .+.||+||+|||+  .|..|++||.+.  ...++...+.+..     .
T Consensus        73 ~~v~~~~~~~v~~i~~-----~~~~v~~~~~-~~~~d~lviAtG~--~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~  142 (384)
T 2v3a_A           73 LNARILTHTRVTGIDP-----GHQRIWIGEE-EVRYRDLVLAWGA--EPIRVPVEGDAQ--DALYPINDLEDYARFRQAA  142 (384)
T ss_dssp             TTCEEECSCCCCEEEG-----GGTEEEETTE-EEECSEEEECCCE--EECCCCCBSTTT--TCEEECSSHHHHHHHHHHH
T ss_pred             CCcEEEeCCEEEEEEC-----CCCEEEECCc-EEECCEEEEeCCC--CcCCCCCCCcCc--CCEEEECCHHHHHHHHHhh
Confidence            4567788888888764     3456666654 6999999999999  889999998642  1233333222211     1


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC--C--ce
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ--D--SV  176 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~--~--~v  176 (227)
                      ..+++++|||+|.+|+|+|..+.+.+.+|+++++.+..+...++             .  ++.....+.++..  +  .+
T Consensus       143 ~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v  222 (384)
T 2v3a_A          143 AGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEA  222 (384)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEE
T ss_pred             ccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEE
Confidence            23789999999999999999999999999999986543322112             1  3444567777753  2  37


Q ss_pred             EEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          177 VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       177 ~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ++.+|+++++|.||+|+| ..|++  .+++..|++++
T Consensus       223 ~~~~g~~i~~d~vv~a~G-~~p~~--~l~~~~g~~~~  256 (384)
T 2v3a_A          223 HLSDGEVIPCDLVVSAVG-LRPRT--ELAFAAGLAVN  256 (384)
T ss_dssp             EETTSCEEEESEEEECSC-EEECC--HHHHHTTCCBS
T ss_pred             EECCCCEEECCEEEECcC-CCcCH--HHHHHCCCCCC
Confidence            788999999999999999 99999  88888888875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.75  E-value=4.4e-19  Score=156.40  Aligned_cols=159  Identities=7%  Similarity=0.058  Sum_probs=110.6

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      +++++.++.+ .++.     ..+.+.+.++  ..+.||+||+|||+  .|..|+++|.+..  ..++..+...... .++
T Consensus       107 ~v~~~~g~~~-~i~~-----~~~~v~~~~G~~~~~~~d~lviAtG~--~p~~p~~~g~~~~--~v~t~~~~~~~~~-~~~  175 (468)
T 2qae_A          107 KVTYYKGEGS-FETA-----HSIRVNGLDGKQEMLETKKTIIATGS--EPTELPFLPFDEK--VVLSSTGALALPR-VPK  175 (468)
T ss_dssp             TCEEEEEEEE-EEET-----TEEEEEETTSCEEEEEEEEEEECCCE--EECCBTTBCCCSS--SEECHHHHHTCSS-CCS
T ss_pred             CCEEEEEEEE-EeeC-----CEEEEEecCCceEEEEcCEEEECCCC--CcCCCCCCCCCcC--ceechHHHhhccc-CCc
Confidence            4556655533 2331     5577776665  78999999999999  8888888886531  2334333333323 478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------cC--CCce--EEcCCccEEeCC--c--eEEc-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------QI--GDSV--VQKPDIKRLLQD--S--VVFQ-  179 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------~~--~~~i--~~~~~i~~~~~~--~--v~~~-  179 (227)
                      +++|||+|++|+|+|..|.+.+.+||++++.+..+..           .+  ..+|  ..+..+.++..+  +  +.+. 
T Consensus       176 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~  255 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEG  255 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEc
Confidence            9999999999999999999999999999996543321           11  1233  334567777643  2  4454 


Q ss_pred             -CC--CEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          180 -DD--TSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       180 -~g--~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                       +|  .++++|.||+|+| ++||+  .+  ++..|++++.
T Consensus       256 ~~g~~~~i~~D~vv~a~G-~~p~~--~~l~l~~~gl~~~~  292 (468)
T 2qae_A          256 KNGKRETVTCEALLVSVG-RRPFT--GGLGLDKINVAKNE  292 (468)
T ss_dssp             C---EEEEEESEEEECSC-EEECC--TTSCHHHHTCCBCT
T ss_pred             CCCceEEEECCEEEECCC-cccCC--CCCCchhcCCccCC
Confidence             67  5789999999999 99999  88  6777888764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.75  E-value=9.1e-19  Score=151.66  Aligned_cols=161  Identities=13%  Similarity=0.099  Sum_probs=120.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC-----CC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP-----DP  115 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~-----~~  115 (227)
                      .+++++. ++|..++.     ....+.+.++..+.||+||+|||+  .|..|++||.+. .+ .+......+.     ..
T Consensus        70 ~~i~~~~-~~v~~id~-----~~~~v~~~~g~~~~~d~lvlAtG~--~p~~~~i~g~~~-~~-v~~~~~~~d~~~l~~~~  139 (404)
T 3fg2_P           70 QAIELIS-DRMVSIDR-----EGRKLLLASGTAIEYGHLVLATGA--RNRMLDVPNASL-PD-VLYLRTLDESEVLRQRM  139 (404)
T ss_dssp             TTEEEEC-CCEEEEET-----TTTEEEESSSCEEECSEEEECCCE--EECCCCSTTTTS-TT-EECCSSHHHHHHHHHHG
T ss_pred             CCCEEEE-EEEEEEEC-----CCCEEEECCCCEEECCEEEEeeCC--CccCCCCCCCCC-Cc-EEEECCHHHHHHHHHHh
Confidence            4567777 88888774     445677777788999999999999  889999998653 11 1211111111     11


Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC-----c
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD-----S  175 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~-----~  175 (227)
                      ..+++++|||+|.+|+|+|..+.+.+.+||++++.+..+...++             .  ++.....|.++..+     +
T Consensus       140 ~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~  219 (404)
T 3fg2_P          140 PDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTG  219 (404)
T ss_dssp             GGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEE
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEE
Confidence            24789999999999999999999999999999996544332222             1  33445678888643     4


Q ss_pred             eEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      |++.+|+++++|.||+|+| +.|++  .+++..|++++.
T Consensus       220 V~~~dG~~i~aD~Vv~a~G-~~p~~--~l~~~~gl~~~~  255 (404)
T 3fg2_P          220 VVLSDGNTLPCDLVVVGVG-VIPNV--EIAAAAGLPTAA  255 (404)
T ss_dssp             EEETTSCEEECSEEEECCC-EEECC--HHHHHTTCCBSS
T ss_pred             EEeCCCCEEEcCEEEECcC-CccCH--HHHHhCCCCCCC
Confidence            8889999999999999999 99999  999988888763

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.75  E-value=2.8e-18  Score=155.30  Aligned_cols=166  Identities=15%  Similarity=0.177  Sum_probs=122.9

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEec-CCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC--
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD--  114 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--  114 (227)
                      +.+++++++++|.+++.   ....+.+.. .++  ..+.||+||+|||+  .|..|++||.+...+ .++.....+..  
T Consensus       105 ~~gi~v~~~~~V~~id~---~~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~~~~-v~~~~~~~~~~~~  178 (588)
T 3ics_A          105 RFNLDIRVLSEVVKINK---EEKTITIKNVTTNETYNEAYDVLILSPGA--KPIVPSIPGIEEAKA-LFTLRNVPDTDRI  178 (588)
T ss_dssp             HTTCEEECSEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCTTTTTCTT-EEECSSHHHHHHH
T ss_pred             hcCcEEEECCEEEEEEC---CCCEEEEeecCCCCEEEEeCCEEEECCCC--CCCCCCCCCcccCCC-eEEeCCHHHHHHH
Confidence            34567888999999874   224555543 233  47899999999999  889999999733222 23222222211  


Q ss_pred             -----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeC-
Q psy810          115 -----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQ-  173 (227)
Q Consensus       115 -----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~-  173 (227)
                           ...+++++|||+|.+|+|+|..+.+.+.+|+++.+.+..+.. ++             .  ++..+..|.++.. 
T Consensus       179 ~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~  257 (588)
T 3ics_A          179 KAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEEN  257 (588)
T ss_dssp             HHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGG
T ss_pred             HHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecC
Confidence                 135789999999999999999999999999999986543322 21             1  3344567888875 


Q ss_pred             -CceEEcCCCEEeccEEEEccccccccccccccCCcccccccC
Q psy810          174 -DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       174 -~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~  215 (227)
                       +++.+.+|+++++|.||+|+| +.|++  ++++..|++++..
T Consensus       258 ~~~v~~~~g~~i~~D~Vi~a~G-~~p~~--~~l~~~g~~~~~~  297 (588)
T 3ics_A          258 GAVVRLKSGSVIQTDMLILAIG-VQPES--SLAKGAGLALGVR  297 (588)
T ss_dssp             GTEEEETTSCEEECSEEEECSC-EEECC--HHHHHTTCCBCGG
T ss_pred             CCEEEECCCCEEEcCEEEEccC-CCCCh--HHHHhcCceEcCC
Confidence             569999999999999999999 99999  8999999988753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.75  E-value=1.2e-18  Score=154.29  Aligned_cols=142  Identities=15%  Similarity=0.163  Sum_probs=104.5

Q ss_pred             CcEEEecCCe-eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           62 KCLHFANEEI-TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        62 ~~~~v~~~~~-~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      ..+.+.+.++ ..+.||+||||||+  .|..|++||.+.+   .++......... .+++++|||+|++|+|+|..|.+.
T Consensus       136 ~~v~v~~~~g~~~~~~d~lviATGs--~p~~p~i~G~~~~---~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~  209 (483)
T 3dgh_A          136 HTLLAKLKSGERTITAQTFVIAVGG--RPRYPDIPGAVEY---GITSDDLFSLDR-EPGKTLVVGAGYIGLECAGFLKGL  209 (483)
T ss_dssp             TEEEEECTTCCEEEEEEEEEECCCE--EECCCSSTTHHHH---CBCHHHHTTCSS-CCCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCeEEEEcCEEEEeCCC--CcCCCCCCCcccc---cCcHHHHhhhhh-cCCcEEEECCCHHHHHHHHHHHHc
Confidence            4566666555 47999999999999  8899999997542   233333333322 468999999999999999999999


Q ss_pred             cCeEEEEeecCccccccCC---------------CceEEcCCccEEeC--Cc---eEEcCCC-----EEeccEEEEcccc
Q psy810          141 AKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ--DS---VVFQDDT-----SHPFDSIIYCTGA  195 (227)
Q Consensus       141 ~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~--~~---v~~~~g~-----~i~~D~vi~atG~  195 (227)
                      +.+||++++ ...+.. ++               -++..+..+.++..  ++   +++.++.     ++++|.||+|+| 
T Consensus       210 g~~Vtlv~~-~~~l~~-~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G-  286 (483)
T 3dgh_A          210 GYEPTVMVR-SIVLRG-FDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIG-  286 (483)
T ss_dssp             TCEEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSC-
T ss_pred             CCEEEEEeC-CCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcc-
Confidence            999999988 433321 11               14444556777753  32   6666654     689999999999 


Q ss_pred             cccccccccc--CCccccccc
Q psy810          196 YKYSYKLTFL--ATFSISMAM  214 (227)
Q Consensus       196 ~~~~~~~~~l--~~~gl~~~~  214 (227)
                      ++|++  .+|  +..|++++.
T Consensus       287 ~~p~~--~~l~l~~~gl~~~~  305 (483)
T 3dgh_A          287 RKGLV--DDLNLPNAGVTVQK  305 (483)
T ss_dssp             EEECC--GGGTGGGTTCCCBT
T ss_pred             cccCc--CcCCchhcCccccC
Confidence            99999  876  778888764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.74  E-value=1.8e-18  Score=144.46  Aligned_cols=161  Identities=14%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++++++ |..++.   ..+.|.+ +.++..+.||+||+|||+  .|..|++||.+.+.+..++.+...+.....+++|
T Consensus        76 ~~~~~~~~-v~~i~~---~~~~~~v-~~~~~~~~~~~lv~AtG~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  148 (320)
T 1trb_A           76 ETEIIFDH-INKVDL---QNRPFRL-NGDNGEYTCDALIIATGA--SARYLGLPSEEAFKGRGVSACATSDGFFYRNQKV  148 (320)
T ss_dssp             TCEEECCC-EEEEEC---SSSSEEE-EESSCEEEEEEEEECCCE--EECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEE
T ss_pred             CCEEEEee-eeEEEe---cCCEEEE-EeCCCEEEcCEEEECCCC--CcCCCCCCChHHhCCceeEecccCCccccCCCeE
Confidence            45677765 777764   2356777 445568999999999999  7888899987655444555543333333468999


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cC-----CCceEE--cCCccEEeCCc-----eEEcC----
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QI-----GDSVVQ--KPDIKRLLQDS-----VVFQD----  180 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~-----~~~i~~--~~~i~~~~~~~-----v~~~~----  180 (227)
                      +|||+|.+|+|+|..|.+.+.+|+++++.+.....     .+     ..+|++  ...+.++..++     +.+.+    
T Consensus       149 ~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~  228 (320)
T 1trb_A          149 AVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNS  228 (320)
T ss_dssp             EEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTC
T ss_pred             EEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCC
Confidence            99999999999999999999999999985432110     01     134444  45677776443     77765    


Q ss_pred             C--CEEeccEEEEccccccccccccccCCcccccc
Q psy810          181 D--TSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       181 g--~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      |  .++++|.||+|+| ++|++  .+++ .+++++
T Consensus       229 g~~~~i~~D~vv~a~G-~~p~~--~~~~-~~l~~~  259 (320)
T 1trb_A          229 DNIESLDVAGLFVAIG-HSPNT--AIFE-GQLELE  259 (320)
T ss_dssp             CCCEEEECSEEEECSC-EEESC--GGGT-TTSCEE
T ss_pred             CceEEEEcCEEEEEeC-CCCCh--HHhc-cccccc
Confidence            5  4689999999999 99999  8887 456654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.74  E-value=4.5e-18  Score=141.68  Aligned_cols=167  Identities=11%  Similarity=0.140  Sum_probs=124.2

Q ss_pred             EeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEc
Q psy810           46 KFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVG  125 (227)
Q Consensus        46 ~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  125 (227)
                      ++..++..+...+.  +.|++.+.+++.+.||+||||||+  .|+.|++||.+.+.+..++++..++...+++++++|||
T Consensus        78 ~~~~~~~~~~~~~~--~~~~v~~~~g~~~~a~~liiATGs--~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIg  153 (304)
T 4fk1_A           78 YYEKTVVMITKQST--GLFEIVTKDHTKYLAERVLLATGM--QEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIIS  153 (304)
T ss_dssp             EEECCEEEEEECTT--SCEEEEETTCCEEEEEEEEECCCC--EEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEEC
T ss_pred             EEeeEEEEeeecCC--CcEEEEECCCCEEEeCEEEEccCC--ccccccccCccccccceeeeccccchhHhcCCceeeec
Confidence            34455666554433  678898888889999999999999  89999999987776666777666666667788899998


Q ss_pred             cCcc-HHHHHHHHHhccCeEEEEeecCccccccC-----CCceEE-cCCccEEeCC-----ceEEcCCCEEeccEEEEcc
Q psy810          126 FGPS-GVDIAMDIEKVAKNVFLSHHISVAFKHQI-----GDSVVQ-KPDIKRLLQD-----SVVFQDDTSHPFDSIIYCT  193 (227)
Q Consensus       126 gG~~-g~e~a~~l~~~~~~Vtli~~~~~~~~~~~-----~~~i~~-~~~i~~~~~~-----~v~~~~g~~i~~D~vi~at  193 (227)
                      ||.. +.|+|..+.+.+.+|+++.++. .+...+     ..++.+ ...+..+..+     .+.+.+|+++++|.+++++
T Consensus       154 gG~~~~~e~a~~~~~~~~~v~i~~~~~-~~~~~~~~~l~~~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~  232 (304)
T 4fk1_A          154 ENEDHTLHMTKLVYNWSTDLVIATNGN-ELSQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVP  232 (304)
T ss_dssp             CSHHHHHHHHHHHTTTCSCEEEECSSC-CCCHHHHHHHHTTTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECC
T ss_pred             CCCchhhhHHHHHHhCCceEEEEeccc-cchhhhhhhhhccceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeee
Confidence            8875 5788888888899999998854 332111     112222 2235555442     3788999999999999999


Q ss_pred             ccccccccccccCCcccccccCCCCCCCCC
Q psy810          194 GAYKYSYKLTFLATFSISMAMSTPDGPNPT  223 (227)
Q Consensus       194 G~~~~~~~~~~l~~~gl~~~~~~~~~~~~~  223 (227)
                      | ..++.  .++.++|++++..   |.+.+
T Consensus       233 g-~~~~~--~~~~~~g~~~~~~---G~I~v  256 (304)
T 4fk1_A          233 T-FFRPN--QFIEQLGCELQSN---GTFVI  256 (304)
T ss_dssp             E-EECSS--CHHHHTTCCCCTT---SSSCS
T ss_pred             c-cccCC--hhhhhcCeEECCC---CCEEE
Confidence            9 88888  8999999999864   44444

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.74  E-value=1.4e-17  Score=141.73  Aligned_cols=156  Identities=13%  Similarity=0.094  Sum_probs=114.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .+++++++++|.+++..+   +.|.+.+.++ .+.||+||+|||++..   |.+|+     +..+|+..+.+...+.+++
T Consensus       101 ~gv~i~~~~~v~~i~~~~---~~~~v~~~~g-~~~~d~vVlAtG~~~~---p~ip~-----~~~~~~~~~~~~~~~~~~~  168 (369)
T 3d1c_A          101 YELNIFENTVVTNISADD---AYYTIATTTE-TYHADYIFVATGDYNF---PKKPF-----KYGIHYSEIEDFDNFNKGQ  168 (369)
T ss_dssp             TTCEEECSCCEEEEEECS---SSEEEEESSC-CEEEEEEEECCCSTTS---BCCCS-----SSCEEGGGCSCGGGSCSSE
T ss_pred             cCCeEEeCCEEEEEEECC---CeEEEEeCCC-EEEeCEEEECCCCCCc---cCCCC-----CceechhhcCChhhcCCCE
Confidence            356788999999988632   4688887776 5999999999999543   34554     2357777777766677889


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCccccc------cCC-------------C-ceEE--cCCccEE--eCCc-
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH------QIG-------------D-SVVQ--KPDIKRL--LQDS-  175 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~~-------------~-~i~~--~~~i~~~--~~~~-  175 (227)
                      |+|||+|.+|+|+|..|.+.+.+||++++++..+..      .++             . +|.+  +..|.++  .++. 
T Consensus       169 vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~  248 (369)
T 3d1c_A          169 YVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQY  248 (369)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEE
T ss_pred             EEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCce
Confidence            999999999999999999999999999986543210      011             1 2554  3467777  3443 


Q ss_pred             -eEEcCCCEEe-ccEEEEccccccccccccccCCcccc
Q psy810          176 -VVFQDDTSHP-FDSIIYCTGAYKYSYKLTFLATFSIS  211 (227)
Q Consensus       176 -v~~~~g~~i~-~D~vi~atG~~~~~~~~~~l~~~gl~  211 (227)
                       +++.+|+.+. +|.||+|+| ++|++  ++|.+.+++
T Consensus       249 ~v~~~~g~~~~~~d~vi~a~G-~~~~~--~~~~~~~~~  283 (369)
T 3d1c_A          249 HISFDSGQSVHTPHEPILATG-FDATK--NPIVQQLFV  283 (369)
T ss_dssp             EEEESSSCCEEESSCCEECCC-BCGGG--SHHHHHHSC
T ss_pred             EEEecCCeEeccCCceEEeec-cCCcc--chhhhhhcc
Confidence             6788998775 699999999 99998  888765554

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.74  E-value=1.6e-18  Score=153.80  Aligned_cols=146  Identities=13%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCc-ccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADL-FRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~-~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ..+.+.+.++  ..+.||+||||||+  .|  |++||.+. +.+..++...........+++++|||+|++|+|+|..|.
T Consensus       143 ~~~~v~~~~g~~~~~~~d~lViATGs--~p--~~ipg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~  218 (491)
T 3urh_A          143 GKVSVTNEKGEEQVLEAKNVVIATGS--DV--AGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWA  218 (491)
T ss_dssp             SEEEEECTTSCEEEEECSEEEECCCE--EC--CCBTTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCceEEEEeCEEEEccCC--CC--CCCCCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHH
Confidence            5567766655  68999999999999  55  46677642 233334433322333345799999999999999999999


Q ss_pred             hccCeEEEEeecCccccccCC-------------CceEE--cCCccEEeCC--c--eEEcC---C--CEEeccEEEEccc
Q psy810          139 KVAKNVFLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLLQD--S--VVFQD---D--TSHPFDSIIYCTG  194 (227)
Q Consensus       139 ~~~~~Vtli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~~~--~--v~~~~---g--~~i~~D~vi~atG  194 (227)
                      +.+.+||++++.+..+.. ++             .+|.+  ...+.++..+  +  +.+.+   |  .++++|.||+|+|
T Consensus       219 ~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G  297 (491)
T 3urh_A          219 RLGAKVTVVEFLDTILGG-MDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG  297 (491)
T ss_dssp             HHTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCC
T ss_pred             HcCCEEEEEecccccccc-CCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeC
Confidence            999999999986543321 22             13333  4457777532  2  55553   5  4689999999999


Q ss_pred             cccccccccc--cCCcccccccC
Q psy810          195 AYKYSYKLTF--LATFSISMAMS  215 (227)
Q Consensus       195 ~~~~~~~~~~--l~~~gl~~~~~  215 (227)
                       ++|++  .+  ++..|++++..
T Consensus       298 -~~p~~--~~l~l~~~g~~~~~~  317 (491)
T 3urh_A          298 -RKPST--DGLGLAKAGVVLDSR  317 (491)
T ss_dssp             -CEECC--TTSCHHHHTCCBCTT
T ss_pred             -CccCC--CccCchhcCceECCC
Confidence             99999  87  56778887743

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.74  E-value=2.4e-18  Score=150.35  Aligned_cols=162  Identities=12%  Similarity=0.111  Sum_probs=120.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccc-eeeec-CCCCCC-----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRG-LQMHS-HDYRVP-----  113 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~-~~~~~-~~~~~~-----  113 (227)
                      .+++++++++|..++.     ..+.+.+.+++.+.||+||+|||+  .|..|++||.+. .+ ..+++ ....+.     
T Consensus        73 ~gv~~~~~~~v~~i~~-----~~~~v~~~~g~~~~~d~lviAtG~--~p~~~~i~G~~~-~~~~~v~~~~~~~d~~~l~~  144 (431)
T 1q1r_A           73 QNIQLLGGTQVTAINR-----DRQQVILSDGRALDYDRLVLATGG--RPRPLPVASGAV-GKANNFRYLRTLEDAECIRR  144 (431)
T ss_dssp             TTEEEECSCCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECCCGGGTTHH-HHSTTEEESSSHHHHHHHHH
T ss_pred             CCCEEEeCCEEEEEEC-----CCCEEEECCCCEEECCEEEEcCCC--CccCCCCCCccc-CCCceEEEECCHHHHHHHHH
Confidence            4678888999998874     334677777778999999999999  889999998652 22 11222 111111     


Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------------CceEEcCCccEEeC---C-
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------------DSVVQKPDIKRLLQ---D-  174 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------------~~i~~~~~i~~~~~---~-  174 (227)
                      .-..+++|+|||+|.+|+|+|..|.+.|.+||++++.+..+...++               -++.....+.++..   + 
T Consensus       145 ~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~  224 (431)
T 1q1r_A          145 QLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQ  224 (431)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTC
T ss_pred             HhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCC
Confidence            1124789999999999999999999999999999986544332122               13344567888764   2 


Q ss_pred             ---ceEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          175 ---SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       175 ---~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                         .+.+.+|+.+++|.||+|+| ++|++  .+++..|++++
T Consensus       225 ~v~~v~~~~G~~i~~D~Vv~a~G-~~p~~--~l~~~~gl~~~  263 (431)
T 1q1r_A          225 KVTAVLCEDGTRLPADLVIAGIG-LIPNC--ELASAAGLQVD  263 (431)
T ss_dssp             CEEEEEETTSCEEECSEEEECCC-EEECC--HHHHHTTCCBS
T ss_pred             cEEEEEeCCCCEEEcCEEEECCC-CCcCc--chhhccCCCCC
Confidence               37788999999999999999 99999  89998888875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.73  E-value=9.1e-19  Score=155.23  Aligned_cols=141  Identities=14%  Similarity=0.170  Sum_probs=101.0

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ..+.+.+.++  ..+.||+||||||+  .|..|+ +||.+..   .++...+..... .+++++|||+|.+|+|+|..|.
T Consensus       132 ~~v~v~~~~g~~~~~~~d~lViATGs--~p~~p~~i~G~~~~---~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~  205 (488)
T 3dgz_A          132 HTVRGVDKGGKATLLSAEHIVIATGG--RPRYPTQVKGALEY---GITSDDIFWLKE-SPGKTLVVGASYVALECAGFLT  205 (488)
T ss_dssp             SEEEEECTTSCEEEEEEEEEEECCCE--EECCCSSCBTHHHH---CBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHH
T ss_pred             CeEEEEeCCCceEEEECCEEEEcCCC--CCCCCCCCCCcccc---cCcHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHH
Confidence            4566665554  68999999999999  889998 9997432   233333333333 4678999999999999999999


Q ss_pred             hccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeC---Cc--eEEcC---CC--EEeccEEEEcc
Q psy810          139 KVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ---DS--VVFQD---DT--SHPFDSIIYCT  193 (227)
Q Consensus       139 ~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~---~~--v~~~~---g~--~i~~D~vi~at  193 (227)
                      +.+.+||++++. ..+.. ++             ..|  .....+.++..   +.  +.+.+   |+  ++++|.||+|+
T Consensus       206 ~~g~~Vtlv~~~-~~l~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~  283 (488)
T 3dgz_A          206 GIGLDTTVMMRS-IPLRG-FDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAI  283 (488)
T ss_dssp             HTTCCEEEEESS-CSSTT-SCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECS
T ss_pred             HcCCceEEEEcC-ccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcc
Confidence            999999999984 33221 21             133  33445666642   22  55544   44  37899999999


Q ss_pred             ccccccccccc--cCCcccccc
Q psy810          194 GAYKYSYKLTF--LATFSISMA  213 (227)
Q Consensus       194 G~~~~~~~~~~--l~~~gl~~~  213 (227)
                      | ++|++  .+  |+..|++++
T Consensus       284 G-~~p~~--~~l~l~~~g~~~~  302 (488)
T 3dgz_A          284 G-RVPET--RTLNLEKAGISTN  302 (488)
T ss_dssp             C-EEESC--GGGTGGGGTCCBC
T ss_pred             c-CCccc--CcCCccccCcEec
Confidence            9 99999  87  678888887

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.73  E-value=8.7e-18  Score=147.62  Aligned_cols=162  Identities=13%  Similarity=0.215  Sum_probs=112.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcE--EEecCCee----EEEcCEEEEccCCCCCCCCCCCCCCCcccc--eeeecCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCL--HFANEEIT----LHYNLLQSLPSSHNSVPNIPSYEGADLFRG--LQMHSHDYRVP  113 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~--~v~~~~~~----~~~~~~vilAtG~~~~p~~p~~~g~~~~~~--~~~~~~~~~~~  113 (227)
                      ++.++++++|.+++..++....|  .+.+.++.    .+.||+||+|||+  .|.+|+.  .+.+.+  ..+|+..+++.
T Consensus       141 ~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~--~p~~p~~--~~~~~~~~~~~~~~~~~~~  216 (463)
T 3s5w_A          141 QEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG--TPRIPQV--FRALKGDGRVFHHSQYLEH  216 (463)
T ss_dssp             TTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC--EECCCGG--GGGGTTCTTEEEGGGHHHH
T ss_pred             CCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC--CCCCcch--hhhcCCCCcEEECHHHHhh
Confidence            46889999999998653222443  66554443    8999999999999  7787763  223333  56777766542


Q ss_pred             -CCC-----CCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCccccc-----------------------------
Q psy810          114 -DPF-----RDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAFKH-----------------------------  156 (227)
Q Consensus       114 -~~~-----~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~~~-----------------------------  156 (227)
                       ..+     .+++|+|||+|.+|+|+|..|.+.  +.+||+++|++..+..                             
T Consensus       217 ~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  296 (463)
T 3s5w_A          217 MAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERL  296 (463)
T ss_dssp             HCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHH
T ss_pred             HHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHH
Confidence             333     589999999999999999999999  8999999996532100                             


Q ss_pred             --cC-C--------------------------CceEE--cCCccEEeCC--c--eEEc---CCCE--EeccEEEEccccc
Q psy810          157 --QI-G--------------------------DSVVQ--KPDIKRLLQD--S--VVFQ---DDTS--HPFDSIIYCTGAY  196 (227)
Q Consensus       157 --~~-~--------------------------~~i~~--~~~i~~~~~~--~--v~~~---~g~~--i~~D~vi~atG~~  196 (227)
                        .+ .                          .++.+  ...|.++..+  +  +.+.   +|+.  +++|.||+||| +
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG-~  375 (463)
T 3s5w_A          297 LREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATG-Y  375 (463)
T ss_dssp             HHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCC-E
T ss_pred             HHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeC-C
Confidence              00 0                          13333  3456666542  2  5565   6764  89999999999 9


Q ss_pred             ccc--ccccccCCccc
Q psy810          197 KYS--YKLTFLATFSI  210 (227)
Q Consensus       197 ~~~--~~~~~l~~~gl  210 (227)
                      +|+  .  +||+++..
T Consensus       376 ~p~~~~--~~l~~l~~  389 (463)
T 3s5w_A          376 ERQLHR--QLLEPLAE  389 (463)
T ss_dssp             ECCC-C--TTTGGGGG
T ss_pred             CCCCcc--chhHHHHH
Confidence            999  6  88886653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.73  E-value=1.4e-18  Score=153.52  Aligned_cols=148  Identities=14%  Similarity=0.106  Sum_probs=105.2

Q ss_pred             CcEEEecCCeeEEEcCEEEEccCCCCCCCCC---CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHH
Q psy810           62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIP---SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIE  138 (227)
Q Consensus        62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p---~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~  138 (227)
                      ..+.+..+ +..+.||+||+|||+  .|..|   ++||.+.    .++...+..... .+++++|||+|++|+|+|..|.
T Consensus       136 ~~~~v~~~-g~~~~~d~lviAtG~--~p~~p~~~~i~G~~~----~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~  207 (478)
T 3dk9_A          136 PKPTIEVS-GKKYTAPHILIATGG--MPSTPHESQIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILS  207 (478)
T ss_dssp             SSCEEEET-TEEEECSCEEECCCE--EECCCCTTTSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHH
T ss_pred             CeEEEEEC-CEEEEeeEEEEccCC--CCCCCCcCCCCCCce----eEchHHhhchhh-cCccEEEECCCHHHHHHHHHHH
Confidence            34566644 457999999999999  88888   8999652    223333333333 3789999999999999999999


Q ss_pred             hccCeEEEEeecCccccccCC-------------CceEE--cCCccEEeC--Cc----eEEcC---C----CEEeccEEE
Q psy810          139 KVAKNVFLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLLQ--DS----VVFQD---D----TSHPFDSII  190 (227)
Q Consensus       139 ~~~~~Vtli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~~--~~----v~~~~---g----~~i~~D~vi  190 (227)
                      +.+.+||++++.+..+.. ++             ..|.+  +..+.++..  ++    +.+.+   |    ..+++|.||
T Consensus       208 ~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi  286 (478)
T 3dk9_A          208 ALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL  286 (478)
T ss_dssp             HTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred             HcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEE
Confidence            999999999996543321 22             23443  445777753  23    55554   2    568999999


Q ss_pred             Eccccccccccccc--cCCcccccccCCCCCCCCCC
Q psy810          191 YCTGAYKYSYKLTF--LATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       191 ~atG~~~~~~~~~~--l~~~gl~~~~~~~~~~~~~~  224 (227)
                      +|+| ++|++  .+  ++..|++++..   |.+.+.
T Consensus       287 ~a~G-~~p~~--~~l~l~~~g~~~~~~---G~i~vd  316 (478)
T 3dk9_A          287 WAIG-RVPNT--KDLSLNKLGIQTDDK---GHIIVD  316 (478)
T ss_dssp             ECSC-EEESC--TTSCGGGGTCCBCTT---CCBCCC
T ss_pred             Eeec-cccCC--CCCCchhcCCeeCCC---CCEeeC
Confidence            9999 99999  74  67888888743   555443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.73  E-value=1.7e-18  Score=152.48  Aligned_cols=146  Identities=11%  Similarity=0.035  Sum_probs=107.0

Q ss_pred             EEEec-CCeeEEEcCEEEEccCCCCCCC-CCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           64 LHFAN-EEITLHYNLLQSLPSSHNSVPN-IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        64 ~~v~~-~~~~~~~~~~vilAtG~~~~p~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      +.+.. .++..+.||++|+|||+  .|. .|++||.+.    .++...+..... .+++++|||+|.+|+|+|..+.+.+
T Consensus       121 ~~v~~~~~~~~~~~d~lviAtG~--~p~~~p~i~G~~~----~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g  193 (463)
T 4dna_A          121 NTVKLLASGKTVTAERIVIAVGG--HPSPHDALPGHEL----CITSNEAFDLPA-LPESILIAGGGYIAVEFANIFHGLG  193 (463)
T ss_dssp             SEEEETTTTEEEEEEEEEECCCE--EECCCTTSTTGGG----CBCHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CEEEEecCCeEEEeCEEEEecCC--CcccCCCCCCccc----cccHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcC
Confidence            34544 45578999999999999  888 999999753    222222222222 4789999999999999999999999


Q ss_pred             CeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC-----ceE-EcCCCEEeccEEEEccccccccc
Q psy810          142 KNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD-----SVV-FQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~-----~v~-~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+|+++++.+..+.. ++             .  ++..+..+.++..+     .|. +.+|+ +++|.||+|+| +.|++
T Consensus       194 ~~Vt~v~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G-~~p~~  270 (463)
T 4dna_A          194 VKTTLIYRGKEILSR-FDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALG-RMPNT  270 (463)
T ss_dssp             CEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSC-EEESC
T ss_pred             CeEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeC-cccCC
Confidence            999999996543321 21             1  34445678887643     366 67787 99999999999 99999


Q ss_pred             cccc--cCCcccccccCCCCCCCCCC
Q psy810          201 KLTF--LATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       201 ~~~~--l~~~gl~~~~~~~~~~~~~~  224 (227)
                        .+  ++..|++++..   |.+.+.
T Consensus       271 --~~l~l~~~g~~~~~~---G~i~vd  291 (463)
T 4dna_A          271 --NGLGLEAAGVRTNEL---GAIIVD  291 (463)
T ss_dssp             --TTSSTGGGTCCBCTT---SCBCCC
T ss_pred             --CCCCccccCceECCC---CCEeEC
Confidence              87  67888888753   544443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.73  E-value=3.2e-18  Score=150.65  Aligned_cols=154  Identities=10%  Similarity=0.059  Sum_probs=107.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCC-CCCCCcccceeeecCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPS-YEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      .+++++.++.+. ++       .+++..++ ..+.||+||||||+  .|..|+ +|. +.   ..+++.+...... .++
T Consensus       109 ~gv~~~~g~~~~-~~-------~~~v~v~~-~~~~~d~lviATGs--~p~~~~~~~~-~~---~v~~~~~~~~~~~-~~~  172 (458)
T 1lvl_A          109 HGVKVVHGWAKV-LD-------GKQVEVDG-QRIQCEHLLLATGS--SSVELPMLPL-GG---PVISSTEALAPKA-LPQ  172 (458)
T ss_dssp             TTCEEECSCEEE-EE-------TTEEEETT-EEEECSEEEECCCE--EECCBTTBCC-BT---TEECHHHHTCCSS-CCS
T ss_pred             CCcEEEEEEEEE-cc-------CCEEEEee-EEEEeCEEEEeCCC--CCCCCCCCCc-cC---cEecHHHHhhhhc-cCC
Confidence            356666665543 22       23455555 67999999999999  777665 552 21   2445444433333 478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCCceEEc--CC-
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQDSVVFQ--DD-  181 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~~v~~~--~g-  181 (227)
                      +++|||+|.+|+|+|..|++.+.+||++++.+..+. .++             .+|  ..+..+.++..+.+.+.  +| 
T Consensus       173 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~  251 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGG  251 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSC
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCc
Confidence            999999999999999999999999999999654332 122             133  33456777775335554  56 


Q ss_pred             -CEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          182 -TSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       182 -~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                       .++++|.||+|+| ++||+  ++  ++..|++++.
T Consensus       252 ~~~i~~D~vv~a~G-~~p~~--~~l~~~~~g~~~~~  284 (458)
T 1lvl_A          252 QLRLEADRVLVAVG-RRPRT--KGFNLECLDLKMNG  284 (458)
T ss_dssp             CCEECCSCEEECCC-EEECC--SSSSGGGSCCCEET
T ss_pred             eEEEECCEEEECcC-CCcCC--CCCCcHhcCCcccC
Confidence             5799999999999 99999  76  5777887764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.73  E-value=4.6e-17  Score=144.80  Aligned_cols=105  Identities=18%  Similarity=0.173  Sum_probs=84.0

Q ss_pred             ceeEEeCceEEEEEEeeCCC-----CcEEEecC-----CeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPT-----KCLHFANE-----EITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR  111 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~-----~~~~v~~~-----~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~  111 (227)
                      ...++|+++|++++..+.+.     +.|+|++.     ....+.+++||+|||.  .|.+|..++   +.+.++|+..|.
T Consensus       159 ~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~--~P~iP~~~~---~~g~v~Hss~y~  233 (501)
T 4b63_A          159 SDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG--TAKMPSGLP---QDPRIIHSSKYC  233 (501)
T ss_dssp             GGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC--EECCCTTSC---CCTTEEEGGGHH
T ss_pred             CCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC--CCCCCCCCC---CCcceeeccccc
Confidence            35799999999998655432     35888653     3468999999999998  777766543   467789998876


Q ss_pred             C------CCCCCCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          112 V------PDPFRDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       112 ~------~~~~~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      +      ...+.||+|+|||+|+||+|++..|++.  +.+|+++.|+.
T Consensus       234 ~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          234 TTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             HHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4      5668899999999999999999999875  67999999964

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.72  E-value=3.8e-18  Score=152.40  Aligned_cols=141  Identities=11%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ....+.+.++  ..+.||+||||||+  .|..|++||.+.+   .++..++..... .+++++|||+|++|+|+|..|.+
T Consensus       158 ~~v~v~~~~g~~~~i~~d~lViATGs--~p~~p~i~G~~~~---~~t~~~~~~l~~-~~~~vvVIGgG~ig~E~A~~l~~  231 (519)
T 3qfa_A          158 HRIKATNNKGKEKIYSAERFLIATGE--RPRYLGIPGDKEY---CISSDDLFSLPY-CPGKTLVVGASYVALECAGFLAG  231 (519)
T ss_dssp             TEEEEECTTCCCCEEEEEEEEECCCE--EECCCCCTTHHHH---CBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCEEEEECCEEEEECCC--CcCCCCCCCccCc---eEcHHHHhhhhh-cCCeEEEECCcHHHHHHHHHHHH
Confidence            4566666554  37999999999999  8999999996532   233333333333 35789999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------CceEE--cCC---ccEEeC---Cc--eE--EcCCC---EEeccEEEE
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------DSVVQ--KPD---IKRLLQ---DS--VV--FQDDT---SHPFDSIIY  191 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~~i~~--~~~---i~~~~~---~~--v~--~~~g~---~i~~D~vi~  191 (227)
                      .+.+||++++ ...+.. ++             ..|.+  ...   +..+..   +.  +.  ..+|.   .+++|.||+
T Consensus       232 ~G~~Vtlv~~-~~~l~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~  309 (519)
T 3qfa_A          232 IGLDVTVMVR-SILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML  309 (519)
T ss_dssp             TTCCEEEEES-SCSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEE
T ss_pred             cCCeEEEEec-cccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEE
Confidence            9999999998 333221 21             23333  333   333332   22  22  24553   468999999


Q ss_pred             ccccccccccccc--cCCcccccc
Q psy810          192 CTGAYKYSYKLTF--LATFSISMA  213 (227)
Q Consensus       192 atG~~~~~~~~~~--l~~~gl~~~  213 (227)
                      |+| ++||+  .+  |+..|++++
T Consensus       310 a~G-~~p~~--~~l~l~~~gl~~~  330 (519)
T 3qfa_A          310 AIG-RDACT--RKIGLETVGVKIN  330 (519)
T ss_dssp             CSC-EEESC--SSSCSTTTTCCCC
T ss_pred             ecC-CcccC--CCCChhhcCcEEc
Confidence            999 99999  87  678888886

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.72  E-value=1.6e-17  Score=146.97  Aligned_cols=162  Identities=17%  Similarity=0.200  Sum_probs=115.8

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEec-CCee--EEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC----
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFAN-EEIT--LHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD----  114 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~~--~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~----  114 (227)
                      +++++++++|..++..   ...+.+.. .+++  .+.||+||+|||+  .|..|++||.+. .+ +++...+.+..    
T Consensus       107 gv~~~~~~~v~~i~~~---~~~v~v~~~~~g~~~~~~~d~lviAtG~--~p~~p~i~G~~~-~~-v~~~~~~~~~~~l~~  179 (480)
T 3cgb_A          107 GIDAKVRHEVTKVDTE---KKIVYAEHTKTKDVFEFSYDRLLIATGV--RPVMPEWEGRDL-QG-VHLLKTIPDAERILK  179 (480)
T ss_dssp             CCEEESSEEEEEEETT---TTEEEEEETTTCCEEEEECSEEEECCCE--EECCCCCBTTTS-BT-EECCSSHHHHHHHHH
T ss_pred             CCEEEeCCEEEEEECC---CCEEEEEEcCCCceEEEEcCEEEECCCC--cccCCCCCCccC-CC-EEEeCCHHHHHHHHH
Confidence            5678888898887642   24455554 2343  7999999999999  889999999753 21 23222222111    


Q ss_pred             ---CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCCc-
Q psy810          115 ---PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQDS-  175 (227)
Q Consensus       115 ---~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~~-  175 (227)
                         ...+++|+|||+|++|+|+|..+.+.+.+|+++++.+..+. .++             .  ++.....+.++..++ 
T Consensus       180 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~  258 (480)
T 3cgb_A          180 TLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFKGNER  258 (480)
T ss_dssp             HHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSB
T ss_pred             HhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCc
Confidence               12579999999999999999999999999999998544322 121             1  333456777776543 


Q ss_pred             e--EEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          176 V--VFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       176 v--~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +  ...++.++++|.||+|+| +.|++  ++|+..|++++.
T Consensus       259 v~~v~~~~~~i~~D~vi~a~G-~~p~~--~~l~~~g~~~~~  296 (480)
T 3cgb_A          259 VEAVETDKGTYKADLVLVSVG-VKPNT--DFLEGTNIRTNH  296 (480)
T ss_dssp             EEEEEETTEEEECSEEEECSC-EEESC--GGGTTSCCCBCT
T ss_pred             EEEEEECCCEEEcCEEEECcC-CCcCh--HHHHhCCcccCC
Confidence            2  233556899999999999 99999  999999998874

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.72  E-value=8.4e-18  Score=148.47  Aligned_cols=151  Identities=14%  Similarity=0.096  Sum_probs=107.0

Q ss_pred             CcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHh
Q psy810           62 KCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEK  139 (227)
Q Consensus        62 ~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~  139 (227)
                      ..+.+.+.++  ..+.||+||+|||+  .|..|+.++.+.  ...++........ ..+++++|||+|++|+|+|..|.+
T Consensus       127 ~~~~v~~~~g~~~~~~~d~lvlAtG~--~p~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~v~ViGgG~~g~e~A~~l~~  201 (476)
T 3lad_A          127 KKVEVTAADGSSQVLDTENVILASGS--KPVEIPPAPVDQ--DVIVDSTGALDFQ-NVPGKLGVIGAGVIGLELGSVWAR  201 (476)
T ss_dssp             TCEEEECTTSCEEEECCSCEEECCCE--EECCCTTSCCCS--SSEEEHHHHTSCS-SCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCceEEEEcCEEEEcCCC--CCCCCCCCCCCc--ccEEechhhhccc-cCCCeEEEECCCHHHHHHHHHHHH
Confidence            5677776665  68999999999999  777666555322  1234443333333 357899999999999999999999


Q ss_pred             ccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeCC--c--eEEcCC---CEEeccEEEEcccccc
Q psy810          140 VAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQD--S--VVFQDD---TSHPFDSIIYCTGAYK  197 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~~--~--v~~~~g---~~i~~D~vi~atG~~~  197 (227)
                      .+.+||++++.+..+. .++             .+|  ..+..+.++..+  .  +.+.++   .++++|.||+|+| ++
T Consensus       202 ~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G-~~  279 (476)
T 3lad_A          202 LGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG-RR  279 (476)
T ss_dssp             TTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC-EE
T ss_pred             cCCcEEEEecCCCcCc-ccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeC-Cc
Confidence            9999999999654332 122             133  445667777632  2  666655   5689999999999 99


Q ss_pred             ccccccc--cCCcccccccCCCCCCCCCC
Q psy810          198 YSYKLTF--LATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       198 ~~~~~~~--l~~~gl~~~~~~~~~~~~~~  224 (227)
                      |++  .+  ++..|++++..   |.+.+.
T Consensus       280 p~~--~~l~~~~~g~~~~~~---G~i~vd  303 (476)
T 3lad_A          280 PVT--TDLLAADSGVTLDER---GFIYVD  303 (476)
T ss_dssp             ECC--TTCCSSCCSCCBCTT---SCBCCC
T ss_pred             ccC--CCCCccccCccccCC---CCEeeC
Confidence            999  75  67888888753   444443

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.72  E-value=4.4e-18  Score=150.66  Aligned_cols=135  Identities=15%  Similarity=0.137  Sum_probs=100.5

Q ss_pred             CeeEEEcCEEEEccCCCCCCC-CCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEe
Q psy810           70 EITLHYNLLQSLPSSHNSVPN-IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSH  148 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~-~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~  148 (227)
                      ++..+.||++|+|||+  .|. .|++||.+.    .++...+..... .+++++|||+|.+|+|+|..+.+.+.+|+++.
T Consensus       149 ~~~~~~~d~lviAtG~--~p~~~p~i~G~~~----~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~  221 (484)
T 3o0h_A          149 TGERISAEKILIATGA--KIVSNSAIKGSDL----CLTSNEIFDLEK-LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLH  221 (484)
T ss_dssp             TCCEEEEEEEEECCCE--EECCC--CBTGGG----SBCTTTGGGCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCeEEEeCEEEEccCC--CcccCCCCCCccc----cccHHHHHhHHh-cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEE
Confidence            5668999999999999  788 889998653    122222222222 47899999999999999999999999999999


Q ss_pred             ecCccccccCC---------------CceEEcCCccEEeCC----ceEEcCCCEEeccEEEEccccccccccccc--cCC
Q psy810          149 HISVAFKHQIG---------------DSVVQKPDIKRLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTF--LAT  207 (227)
Q Consensus       149 ~~~~~~~~~~~---------------~~i~~~~~i~~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~--l~~  207 (227)
                      +.+..+.. ++               -++..+..|.++..+    .+++.+|+++++|.||+|+| ++|++  .+  ++.
T Consensus       222 ~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G-~~p~~--~~l~l~~  297 (484)
T 3o0h_A          222 RGDLILRN-FDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATG-RVPNT--TGLGLER  297 (484)
T ss_dssp             SSSSSSTT-SCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCC-EEECC--TTCCHHH
T ss_pred             CCCccccc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeC-CCcCC--CCCChhh
Confidence            96543321 21               133445678888653    37788999999999999999 99999  87  567


Q ss_pred             cccccccC
Q psy810          208 FSISMAMS  215 (227)
Q Consensus       208 ~gl~~~~~  215 (227)
                      .|++++..
T Consensus       298 ~g~~~~~~  305 (484)
T 3o0h_A          298 AGVKVNEF  305 (484)
T ss_dssp             HTCCBCTT
T ss_pred             cCceECCC
Confidence            78888753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.72  E-value=2.4e-18  Score=152.76  Aligned_cols=164  Identities=9%  Similarity=0.037  Sum_probs=117.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCc--ccceeeecCCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADL--FRGLQMHSHDYRVPD----  114 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~--~~~~~~~~~~~~~~~----  114 (227)
                      .+++++++++|.+|+.     ..++|.+.+++.+.||+||||||+  .|..|++++...  +...........+..    
T Consensus       103 ~gv~~~~g~~v~~id~-----~~~~V~~~~g~~i~yd~lviATGs--~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~  175 (493)
T 1m6i_A          103 GGVAVLTGKKVVQLDV-----RDNMVKLNDGSQITYEKCLIATGG--TPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEK  175 (493)
T ss_dssp             CEEEEEETCCEEEEEG-----GGTEEEETTSCEEEEEEEEECCCE--EECCCHHHHTSCHHHHHTEEECCSHHHHHHHHH
T ss_pred             CCeEEEcCCEEEEEEC-----CCCEEEECCCCEEECCEEEECCCC--CCCCCCCcccccccccCceEEEcCHHHHHHHHH
Confidence            4678888999999875     446787777888999999999999  788777655311  111112111111111    


Q ss_pred             -CCCCCeEEEEccCccHHHHHHHHHh----ccCeEEEEeecCccccccCC-------------Cce--EEcCCccEEeC-
Q psy810          115 -PFRDQNVLLVGFGPSGVDIAMDIEK----VAKNVFLSHHISVAFKHQIG-------------DSV--VQKPDIKRLLQ-  173 (227)
Q Consensus       115 -~~~~~~v~VvGgG~~g~e~a~~l~~----~~~~Vtli~~~~~~~~~~~~-------------~~i--~~~~~i~~~~~-  173 (227)
                       ...+++|+|||+|++|+|+|..|.+    .+.+|+++++.+..+...++             ..|  ..+..|.++.. 
T Consensus       176 ~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~  255 (493)
T 1m6i_A          176 ISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS  255 (493)
T ss_dssp             HHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEE
T ss_pred             HhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEec
Confidence             1137899999999999999999987    46789999885432222222             233  34557778753 


Q ss_pred             -C--ceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          174 -D--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       174 -~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                       +  .+++.+|+++++|.||+|+| +.||+  .+++..|++++.
T Consensus       256 ~~~~~v~l~dG~~i~aD~Vv~a~G-~~pn~--~l~~~~gl~~~~  296 (493)
T 1m6i_A          256 SGKLLIKLKDGRKVETDHIVAAVG-LEPNV--ELAKTGGLEIDS  296 (493)
T ss_dssp             TTEEEEEETTSCEEEESEEEECCC-EEECC--TTHHHHTCCBCT
T ss_pred             CCeEEEEECCCCEEECCEEEECCC-CCccH--HHHHHcCCcccc
Confidence             2  37788999999999999999 99999  999988988874

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.71  E-value=1.2e-17  Score=151.50  Aligned_cols=140  Identities=13%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             EEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhcc
Q psy810           64 LHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA  141 (227)
Q Consensus        64 ~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~  141 (227)
                      ..+.+.++  ..+.||+||||||+  .|..|++||.+.+   .++..+.... ...+++|+|||||++|+|+|..|++.|
T Consensus       236 v~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g  309 (598)
T 2x8g_A          236 VQITDKNQKVSTITGNKIILATGE--RPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLG  309 (598)
T ss_dssp             EEEECTTCCEEEEEEEEEEECCCE--EECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCeEEEEeCEEEEeCCC--CCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcC
Confidence            34444444  57999999999999  8899999996542   2333222222 234678999999999999999999999


Q ss_pred             CeEEEEeecCccccccCC-------------CceEE--cCCccEEe--------C---CceE----EcCCCEEe--ccEE
Q psy810          142 KNVFLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLL--------Q---DSVV----FQDDTSHP--FDSI  189 (227)
Q Consensus       142 ~~Vtli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~--------~---~~v~----~~~g~~i~--~D~v  189 (227)
                      .+||+++|. ..+. .++             .+|.+  ...+.++.        .   +.+.    +.+|+.++  +|.|
T Consensus       310 ~~Vtlv~~~-~~l~-~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~v  387 (598)
T 2x8g_A          310 GDVTVMVRS-ILLR-GFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETV  387 (598)
T ss_dssp             CCEEEEESS-CSST-TSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEE
T ss_pred             CEEEEEECC-cCcC-cCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEE
Confidence            999999985 3222 121             23333  33334442        1   2232    35777654  9999


Q ss_pred             EEccccccccccccc--cCCccccccc
Q psy810          190 IYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       190 i~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                      |+|+| ++||+  .+  ++..|++++.
T Consensus       388 i~a~G-~~p~~--~~l~~~~~gl~~~~  411 (598)
T 2x8g_A          388 IFAVG-REPQL--SKVLCETVGVKLDK  411 (598)
T ss_dssp             EECSC-EEECG--GGTBCGGGCCCBCT
T ss_pred             EEEeC-Ccccc--CccCchhcCceECC
Confidence            99999 99999  87  4677888864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.70  E-value=7.9e-17  Score=141.93  Aligned_cols=156  Identities=11%  Similarity=0.132  Sum_probs=110.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQ  119 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~  119 (227)
                      ++++..+ ++..++.     ..+.+.+.++  ..+.||+||+|||+  .|..|++||.+...  .++..+..+... .++
T Consensus       109 ~v~~~~g-~~~~~~~-----~~~~v~~~~g~~~~~~~d~lviAtGs--~p~~p~i~G~~~~~--~~~~~~~~~~~~-~~~  177 (467)
T 1zk7_A          109 AITVVHG-EARFKDD-----QSLTVRLNEGGERVVMFDRCLVATGA--SPAVPPIPGLKESP--YWTSTEALASDT-IPE  177 (467)
T ss_dssp             TEEEEEE-EEEEEET-----TEEEEEETTSSEEEEECSEEEECCCE--EECCCCCTTTTTSC--CBCHHHHHHCSS-CCS
T ss_pred             CeEEEEE-EEEEccC-----CEEEEEeCCCceEEEEeCEEEEeCCC--CCCCCCCCCCCcCc--eecHHHHhcccc-cCC
Confidence            4555544 3444432     5677776666  78999999999999  88999999975421  223222222222 478


Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------CceE--EcCCccEEeCC--c--eEEcC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------DSVV--QKPDIKRLLQD--S--VVFQD  180 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~~i~--~~~~i~~~~~~--~--v~~~~  180 (227)
                      +++|||+|++|+|+|..+.+.+.+||++++.+..+.  ++             .+++  .+..|.++..+  .  +.+. 
T Consensus       178 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-  254 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-  254 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-
Confidence            999999999999999999999999999999654332  22             1333  34567777532  2  4444 


Q ss_pred             CCEEeccEEEEccccccccccccc--cCCccccccc
Q psy810          181 DTSHPFDSIIYCTGAYKYSYKLTF--LATFSISMAM  214 (227)
Q Consensus       181 g~~i~~D~vi~atG~~~~~~~~~~--l~~~gl~~~~  214 (227)
                      +.++++|.||+|+| +.|++  .+  ++..+++++.
T Consensus       255 ~~~i~aD~Vv~a~G-~~p~~--~~l~l~~~gl~~~~  287 (467)
T 1zk7_A          255 HGELRADKLLVATG-RTPNT--RSLALDAAGVTVNA  287 (467)
T ss_dssp             TEEEEESEEEECSC-EEESC--TTSCGGGGTCCBCT
T ss_pred             CcEEEcCEEEECCC-CCcCC--CcCCchhcCCcCCC
Confidence            56899999999999 99998  75  5677888764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.55  E-value=5e-15  Score=129.42  Aligned_cols=170  Identities=9%  Similarity=0.080  Sum_probs=110.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCC----
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPF----  116 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~----  116 (227)
                      .++++. ..+|..++.     +...+.+++++.+.||+||+|||+  .|..|++||.+...+...+.+.+.+....    
T Consensus        72 ~gv~~~-~~~v~~id~-----~~~~V~~~~g~~i~~d~lviAtG~--~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~  143 (437)
T 3sx6_A           72 KGIHFI-AQSAEQIDA-----EAQNITLADGNTVHYDYLMIATGP--KLAFENVPGSDPHEGPVQSICTVDHAERAFAEY  143 (437)
T ss_dssp             TTCEEE-CSCEEEEET-----TTTEEEETTSCEEECSEEEECCCC--EECGGGSTTCSTTTSSEECCSSHHHHHHHHHHH
T ss_pred             CCCEEE-EeEEEEEEc-----CCCEEEECCCCEEECCEEEECCCC--CcCcccCCCCCcccCcceecccccHHHHHHHHH
Confidence            345554 568888764     334677777778999999999999  88889999987543333444433332111    


Q ss_pred             ----CCCeEEEEccCccH------HHHHHHH----HhccCe-----EEEEeecCcccc---ccCC------------Cce
Q psy810          117 ----RDQNVLLVGFGPSG------VDIAMDI----EKVAKN-----VFLSHHISVAFK---HQIG------------DSV  162 (227)
Q Consensus       117 ----~~~~v~VvGgG~~g------~e~a~~l----~~~~~~-----Vtli~~~~~~~~---~~~~------------~~i  162 (227)
                          .+++++|||+|++|      +|+|..+    .+.+.+     ||++++.+....   ..++            .+|
T Consensus       144 ~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI  223 (437)
T 3sx6_A          144 QALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGI  223 (437)
T ss_dssp             HHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTC
T ss_pred             HHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCC
Confidence                14567889986554      8888544    444543     999998543211   0111            134


Q ss_pred             E--EcCCccEEeCCceEEcC---------CCEEeccEEEEccccccccccccccCCcccccccCCCCCCCCCCC
Q psy810          163 V--QKPDIKRLLQDSVVFQD---------DTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTSR  225 (227)
Q Consensus       163 ~--~~~~i~~~~~~~v~~~~---------g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~  225 (227)
                      +  .+..+.+++++++++.+         +.++++|.+++|+| +.++.  ++.+..++ .+   ..|.+++.+
T Consensus       224 ~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g-~~~~~--~~~~~~gl-~~---~~G~i~Vd~  290 (437)
T 3sx6_A          224 EAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPA-FKGVP--AVAGVEGL-CN---PGGFVLVDE  290 (437)
T ss_dssp             EEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECC-EECCH--HHHTSTTT-BC---TTSCBCBCT
T ss_pred             EEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCC-CcCch--hhhccccc-cC---CCCcEEeCh
Confidence            4  35578888888877764         56789999999999 98886  54444555 22   345555544

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.52  E-value=1.6e-15  Score=134.86  Aligned_cols=124  Identities=17%  Similarity=0.269  Sum_probs=87.2

Q ss_pred             CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCC--------------------C--CCCCCeEEEEcc
Q psy810           69 EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVP--------------------D--PFRDQNVLLVGF  126 (227)
Q Consensus        69 ~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~--------------------~--~~~~~~v~VvGg  126 (227)
                      .++..+.||+||||||+  .|+.|++||++++.   +......++                    .  .....+++||||
T Consensus       151 ~~~~~i~YD~LViAtGs--~~~~~~ipG~~e~a---~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGg  225 (502)
T 4g6h_A          151 AEPAEIKYDYLISAVGA--EPNTFGIPGVTDYG---HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGG  225 (502)
T ss_dssp             TCCEEEECSEEEECCCC--EECCTTCTTHHHHC---EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECC
T ss_pred             CCceEEeCCEEEEcCCc--ccccCCccCccccc---CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECC
Confidence            45678999999999999  88999999975421   111111110                    0  011247999999


Q ss_pred             CccHHHHHHHHHhcc--------------CeEEEEeecCccccccCCC---------------ceEEcCCccEEeCCceE
Q psy810          127 GPSGVDIAMDIEKVA--------------KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQDSVV  177 (227)
Q Consensus       127 G~~g~e~a~~l~~~~--------------~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~~v~  177 (227)
                      |++|+|+|..|..++              .+|+|+++.+..+. .++.               ++..+..|.+++++++.
T Consensus       226 G~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~-~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~  304 (502)
T 4g6h_A          226 GPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLN-MFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLL  304 (502)
T ss_dssp             SHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSEEE
T ss_pred             CcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccccc-CCCHHHHHHHHHHHHhcceeeecCceEEEEeCCceE
Confidence            999999999987643              57999999654332 3332               33445678888888755


Q ss_pred             E----cCCC----EEeccEEEEcccccccc
Q psy810          178 F----QDDT----SHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       178 ~----~~g~----~i~~D~vi~atG~~~~~  199 (227)
                      +    .||+    ++++|+||||+| .+||
T Consensus       305 ~~~~~~dg~~~~~~i~ad~viwa~G-v~~~  333 (502)
T 4g6h_A          305 AKTKHEDGKITEETIPYGTLIWATG-NKAR  333 (502)
T ss_dssp             EEEECTTSCEEEEEEECSEEEECCC-EECC
T ss_pred             EEEEecCcccceeeeccCEEEEccC-CcCC
Confidence            4    4554    589999999999 9998

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.51  E-value=1.2e-14  Score=125.84  Aligned_cols=166  Identities=13%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCC--eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCC--
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEE--ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFR--  117 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~--~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~--  117 (227)
                      +++++.+ +|..++.   +.....+...+  ...+.||+||+|||+  .|..|++||.+.   ...+.+.+.+.....  
T Consensus        70 gv~~~~~-~v~~i~~---~~~~V~~~~g~~~~~~~~~d~lViAtG~--~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~  140 (409)
T 3h8l_A           70 GIQFQEG-TVEKIDA---KSSMVYYTKPDGSMAEEEYDYVIVGIGA--HLATELVKGWDK---YGYSVCEPEFATKLREK  140 (409)
T ss_dssp             TCEEEEC-EEEEEET---TTTEEEEECTTSCEEEEECSEEEECCCC--EECGGGSBTHHH---HCEESSSTTHHHHHHHH
T ss_pred             CeEEEEe-eEEEEeC---CCCEEEEccCCcccceeeCCEEEECCCC--CcCccCCCChhh---cCcCcCCHHHHHHHHHH
Confidence            4566655 7777764   11223333222  245999999999999  888888999754   123444443332211  


Q ss_pred             ----CCeEEEEccC-------------------c------cHHHHHHH----HHhcc----CeEEEEeecCccccccCC-
Q psy810          118 ----DQNVLLVGFG-------------------P------SGVDIAMD----IEKVA----KNVFLSHHISVAFKHQIG-  159 (227)
Q Consensus       118 ----~~~v~VvGgG-------------------~------~g~e~a~~----l~~~~----~~Vtli~~~~~~~~~~~~-  159 (227)
                          .++++|||+|                   .      .++|+|..    +.+.+    .+|+++++.+ .+. .++ 
T Consensus       141 l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~  218 (409)
T 3h8l_A          141 LESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSP  218 (409)
T ss_dssp             HHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCH
T ss_pred             HHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCH
Confidence                1567799999                   1      36777754    44556    3899999854 322 121 


Q ss_pred             ------------CceEE--cCCccEEeCCceEEcCCCEEeccEEEEccccccccccccccCCcccccccCCCCCCCCCC
Q psy810          160 ------------DSVVQ--KPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAMSTPDGPNPTS  224 (227)
Q Consensus       160 ------------~~i~~--~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~  224 (227)
                                  .+|++  +..|.+++++++++++|+++++|.||+|+| +.|+   +++.+.++.+.+  ..|.+++.
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G-~~~~---~~l~~~~~~l~~--~~G~i~vd  291 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPP-YTGN---PALKNSTPDLVD--DGGFIPTD  291 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECC-EECC---HHHHTSCGGGSC--TTSCBCBB
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCC-CCcc---HHHHhccccCcC--CCCCEEeC
Confidence                        13443  567999998899999999999999999999 9998   577776444321  33545443

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.49  E-value=2.4e-14  Score=131.53  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=93.7

Q ss_pred             EcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccC------------
Q psy810           75 YNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK------------  142 (227)
Q Consensus        75 ~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~------------  142 (227)
                      .||+||+|||+  .|..|++||.+..  .+++++++.+.....+++|+|||||++|+|+|..|.+.|.            
T Consensus       455 ~~d~lviAtG~--~p~~~~i~G~~~~--~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~  530 (671)
T 1ps9_A          455 AFDETILASGI--VPRTPPIDGIDHP--KVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNE  530 (671)
T ss_dssp             CSSEEEECCCE--EECCCCCBTTTST--TEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHH
T ss_pred             cCCEEEEccCC--CcCCCCCCCCCCC--cEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhh
Confidence            89999999999  8899999997642  3455555555555568999999999999999999997763            


Q ss_pred             -------------------------eEEEEeecCccccccCC-------------CceEE--cCCccEEeCCceEE-cCC
Q psy810          143 -------------------------NVFLSHHISVAFKHQIG-------------DSVVQ--KPDIKRLLQDSVVF-QDD  181 (227)
Q Consensus       143 -------------------------~Vtli~~~~~~~~~~~~-------------~~i~~--~~~i~~~~~~~v~~-~~g  181 (227)
                                               +|+++++....+...++             .+|++  +..+.++.++++.+ .+|
T Consensus       531 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G  610 (671)
T 1ps9_A          531 WGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVING  610 (671)
T ss_dssp             TTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETT
T ss_pred             hcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCC
Confidence                                     56677664332222121             23433  45677888878777 677


Q ss_pred             --CEEeccEEEEccccccccccccccCC
Q psy810          182 --TSHPFDSIIYCTGAYKYSYKLTFLAT  207 (227)
Q Consensus       182 --~~i~~D~vi~atG~~~~~~~~~~l~~  207 (227)
                        .++++|.||+|+| ++||+  .+++.
T Consensus       611 ~~~~i~~D~Vi~a~G-~~p~~--~l~~~  635 (671)
T 1ps9_A          611 ETQVLAVDNVVICAG-QEPNR--ALAQP  635 (671)
T ss_dssp             EEEEECCSEEEECCC-EEECC--TTHHH
T ss_pred             eEEEEeCCEEEECCC-ccccH--HHHHH
Confidence              4689999999999 99999  87753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.42  E-value=2.6e-13  Score=119.25  Aligned_cols=136  Identities=10%  Similarity=0.028  Sum_probs=89.6

Q ss_pred             EEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC---------CCC--------CCCCCCCeEEEEccCccHHHHHHH
Q psy810           74 HYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD---------YRV--------PDPFRDQNVLLVGFGPSGVDIAMD  136 (227)
Q Consensus        74 ~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~---------~~~--------~~~~~~~~v~VvGgG~~g~e~a~~  136 (227)
                      +.||+|++|||++ .|+.|++||.+. .+ +++..+         +.+        .....+++|+|||||++|+|+|..
T Consensus       206 ~~~d~vvlAtG~~-~~~~~~ipG~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~  282 (456)
T 2vdc_G          206 RKHVAVLVATGVY-KARDIKAPGSGL-GN-IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRT  282 (456)
T ss_dssp             SSCSEEEECCCCC-EECCTTCSCCTT-TT-EEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHH
T ss_pred             hhCCEEEEecCCC-CCCCCCCCCCcC-CC-cEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHH
Confidence            5699999999993 266778888653 22 121100         111        122568999999999999999999


Q ss_pred             HHhccC-eEEEEeecCcc-cccc-------CCCceE--EcCCccEEeCCc----eEEc------------------CC--
Q psy810          137 IEKVAK-NVFLSHHISVA-FKHQ-------IGDSVV--QKPDIKRLLQDS----VVFQ------------------DD--  181 (227)
Q Consensus       137 l~~~~~-~Vtli~~~~~~-~~~~-------~~~~i~--~~~~i~~~~~~~----v~~~------------------~g--  181 (227)
                      +.+.|. +||+++|++.. +...       ....|+  ....+.++.+++    +++.                  +|  
T Consensus       283 ~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~  362 (456)
T 2vdc_G          283 AIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSE  362 (456)
T ss_dssp             HHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEE
T ss_pred             HHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcE
Confidence            999876 69999996532 2110       012333  234455553322    2321                  23  


Q ss_pred             CEEeccEEEEcccccccccccc--ccCCcccccccC
Q psy810          182 TSHPFDSIIYCTGAYKYSYKLT--FLATFSISMAMS  215 (227)
Q Consensus       182 ~~i~~D~vi~atG~~~~~~~~~--~l~~~gl~~~~~  215 (227)
                      .++++|.||+|+| +.|+.  .  |++..+++++..
T Consensus       363 ~~i~aD~Vi~A~G-~~p~~--~~~~l~~~gl~~~~~  395 (456)
T 2vdc_G          363 FTVQADLVIKALG-FEPED--LPNAFDEPELKVTRW  395 (456)
T ss_dssp             EEEECSEEEECSC-EECCC--HHHHHHSTTSCBCTT
T ss_pred             EEEECCEEEECCC-CCCCc--chhhcccCCeeECCC
Confidence            3589999999999 99987  5  888889888753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.41  E-value=1.2e-13  Score=128.04  Aligned_cols=138  Identities=12%  Similarity=0.043  Sum_probs=98.4

Q ss_pred             cCCeeEEEcCEEEEccCCCCC------CCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEc--cCccHHHHHHHHHh
Q psy810           68 NEEITLHYNLLQSLPSSHNSV------PNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVG--FGPSGVDIAMDIEK  139 (227)
Q Consensus        68 ~~~~~~~~~~~vilAtG~~~~------p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG--gG~~g~e~a~~l~~  139 (227)
                      .+++..+.||+||+|||+...      |..|++||.+.+...+++..++.+.....+++|+|||  ||++|+|+|..|.+
T Consensus       472 ~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~  551 (729)
T 1o94_A          472 ADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT  551 (729)
T ss_dssp             HHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHH
T ss_pred             hhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHH
Confidence            334456889999999999321      5778899987443345555555555555689999999  99999999999999


Q ss_pred             ccCeEEEEeecCccccc-cCC------------CceEE--cCCccEEeCCceEEc----CC-CE----------------
Q psy810          140 VAKNVFLSHHISVAFKH-QIG------------DSVVQ--KPDIKRLLQDSVVFQ----DD-TS----------------  183 (227)
Q Consensus       140 ~~~~Vtli~~~~~~~~~-~~~------------~~i~~--~~~i~~~~~~~v~~~----~g-~~----------------  183 (227)
                      .|.+||++++++ .... .++            .+|++  ...+.++.++++.+.    ++ ..                
T Consensus       552 ~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (729)
T 1o94_A          552 AGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSH  630 (729)
T ss_dssp             TTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCC
T ss_pred             cCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcc
Confidence            999999999955 2210 111            23443  446778877665542    33 22                


Q ss_pred             --EeccEEEEccccccccccccccCCcc
Q psy810          184 --HPFDSIIYCTGAYKYSYKLTFLATFS  209 (227)
Q Consensus       184 --i~~D~vi~atG~~~~~~~~~~l~~~g  209 (227)
                        +++|.||+|+| ++|++  .++++++
T Consensus       631 ~~i~aD~Vv~a~G-~~p~~--~l~~~l~  655 (729)
T 1o94_A          631 RWIEFDSLVLVTG-RHSEC--TLWNELK  655 (729)
T ss_dssp             EEEECSEEEEESC-EEECC--HHHHHHH
T ss_pred             eeeeCCEEEECCC-CCCCh--HHHHHHh
Confidence              89999999999 99999  8776543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.38  E-value=4.4e-13  Score=123.48  Aligned_cols=134  Identities=8%  Similarity=-0.088  Sum_probs=99.3

Q ss_pred             eeEEEcCEEEEccCCCCC------CCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEc--cCccHHHHHHHHHhccC
Q psy810           71 ITLHYNLLQSLPSSHNSV------PNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVG--FGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~------p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG--gG~~g~e~a~~l~~~~~  142 (227)
                      +..+.||+||+|||+...      |..|++||.+.  ...+++.++.+.....+++|+|||  +|.+|+|+|..|.+.+.
T Consensus       472 ~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~  549 (690)
T 3k30_A          472 IVEFGFEHVITATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGY  549 (690)
T ss_dssp             HHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTC
T ss_pred             HhhcCCCEEEEcCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCC
Confidence            345789999999999322      56788888753  245565555555555688999999  99999999999999999


Q ss_pred             eEEEEeecCccccccC-------------CC--ceEEcCCccEEeCCceEEc-----CCCEEeccEEEEccccccccccc
Q psy810          143 NVFLSHHISVAFKHQI-------------GD--SVVQKPDIKRLLQDSVVFQ-----DDTSHPFDSIIYCTGAYKYSYKL  202 (227)
Q Consensus       143 ~Vtli~~~~~~~~~~~-------------~~--~i~~~~~i~~~~~~~v~~~-----~g~~i~~D~vi~atG~~~~~~~~  202 (227)
                      +|+++++.+.......             ..  ++..++.|.++..+++.+.     ++.++++|.||+|+| ++|++  
T Consensus       550 ~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G-~~p~~--  626 (690)
T 3k30_A          550 EVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTA-RLPRE--  626 (690)
T ss_dssp             EEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESC-EEECC--
T ss_pred             eeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCC-CCCCh--
Confidence            9999998553322111             01  3444567888888775553     445789999999999 99999  


Q ss_pred             cccCCcc
Q psy810          203 TFLATFS  209 (227)
Q Consensus       203 ~~l~~~g  209 (227)
                      .++..++
T Consensus       627 ~l~~~l~  633 (690)
T 3k30_A          627 ELYLDLV  633 (690)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.38  E-value=5.5e-13  Score=126.89  Aligned_cols=161  Identities=11%  Similarity=0.001  Sum_probs=107.6

Q ss_pred             ceeEEeCceEEEEEEee------CCCCcEEEec------CCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCC
Q psy810           42 CIEIKFGSSWAEIEKFS------VPTKCLHFAN------EEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHD  109 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~------~~~~~~~v~~------~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~  109 (227)
                      +++++.+++|..+....      ...+.+.+.+      +++..+.||+||||||+  .|..|++||.+. .+ ++++..
T Consensus       196 ~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs--~p~~~~ipG~~~-~g-v~~~~~  271 (965)
T 2gag_A          196 ETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA--HERPIVFENNDR-PG-IMLAGA  271 (965)
T ss_dssp             TEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE--EECCCCCBTCCS-TT-EEEHHH
T ss_pred             CcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC--ccCCCCCCCCCC-CC-EEEhHH
Confidence            55677777777664210      0001222222      22357999999999999  788889998754 22 233211


Q ss_pred             ---CCC-CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----cCCCceEEcCCccEEeC--C----
Q psy810          110 ---YRV-PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----QIGDSVVQKPDIKRLLQ--D----  174 (227)
Q Consensus       110 ---~~~-~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----~~~~~i~~~~~i~~~~~--~----  174 (227)
                         +.. .....+++|+|||+|++|+|+|..|.+.|.+|+++++++.....     ...-++.....+.++.+  +    
T Consensus       272 ~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~~~v~  351 (965)
T 2gag_A          272 VRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAAAAQAVADGVQVISGSVVVDTEADENGELS  351 (965)
T ss_dssp             HHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHHHHHHHTTCCEEETEEEEEEEECTTSCEE
T ss_pred             HHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchhHHHHHhCCeEEEeCCEeEEEeccCCCCEE
Confidence               111 22335789999999999999999999999999999986532210     11224455566777764  2    


Q ss_pred             ceEEcC-------C--CEEeccEEEEccccccccccccccCCcc
Q psy810          175 SVVFQD-------D--TSHPFDSIIYCTGAYKYSYKLTFLATFS  209 (227)
Q Consensus       175 ~v~~~~-------g--~~i~~D~vi~atG~~~~~~~~~~l~~~g  209 (227)
                      +|++.+       |  .++++|.||+|+| ++||+  .++...+
T Consensus       352 ~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G-~~P~~--~l~~~~~  392 (965)
T 2gag_A          352 AIVVAELDEARELGGTQRFEADVLAVAGG-FNPVV--HLHSQRQ  392 (965)
T ss_dssp             EEEEEEECTTCCEEEEEEEECSEEEEECC-EEECC--HHHHHTT
T ss_pred             EEEEEeccccCCCCceEEEEcCEEEECCC-cCcCh--HHHHhCC
Confidence            466664       5  5689999999999 99999  8886554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.34  E-value=6.3e-12  Score=110.48  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=57.2

Q ss_pred             EEEcCEEEEccCCCCC-CCCCCCCCCCcccceeeecCCC-----------CCCCCCCCCeEEEEccCccHHHHHHHHHhc
Q psy810           73 LHYNLLQSLPSSHNSV-PNIPSYEGADLFRGLQMHSHDY-----------RVPDPFRDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~-p~~p~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      .+.||+||+|||+  . |..|++||.+ +.+ +++..++           ++...+.+++|+|||+|++|+|+|..|.+.
T Consensus        94 ~~~~d~lViAtG~--~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~  169 (456)
T 1lqt_A           94 SERYDAVIYAVGA--QSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTD  169 (456)
T ss_dssp             HHHSSEEEECCCC--CEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSC
T ss_pred             eEeCCEEEEeeCC--CCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhh
Confidence            4789999999999  5 5777899975 333 2332221           333345689999999999999999999874


Q ss_pred             --------------------c-CeEEEEeecCc
Q psy810          141 --------------------A-KNVFLSHHISV  152 (227)
Q Consensus       141 --------------------~-~~Vtli~~~~~  152 (227)
                                          + .+|+++.|++.
T Consensus       170 ~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          170 PDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             HHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             hhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence                                3 59999999654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.25  E-value=1.8e-11  Score=107.68  Aligned_cols=76  Identities=13%  Similarity=0.160  Sum_probs=55.3

Q ss_pred             EEEcCEEEEccCCCCCC-CCCCCCCCCcccceeeecCCC----------CCCC-CCCCCeEEEEccCccHHHHHHHHH--
Q psy810           73 LHYNLLQSLPSSHNSVP-NIPSYEGADLFRGLQMHSHDY----------RVPD-PFRDQNVLLVGFGPSGVDIAMDIE--  138 (227)
Q Consensus        73 ~~~~~~vilAtG~~~~p-~~p~~~g~~~~~~~~~~~~~~----------~~~~-~~~~~~v~VvGgG~~g~e~a~~l~--  138 (227)
                      .+.||+||+|||+  .| +.|++||.+. .+ ++++.++          .... .+.+++|+|||+|++|+|+|..|.  
T Consensus        92 ~~~~d~lVlAtGs--~~~~~~~ipG~~~-~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~  167 (460)
T 1cjc_A           92 QDAYHAVVLSYGA--EDHQALDIPGEEL-PG-VFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTP  167 (460)
T ss_dssp             HHHSSEEEECCCC--CEECCCCCTTTTS-TT-EEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             eEEcCEEEEecCc--CCCCCCCCCCCCC-Cc-EEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhc
Confidence            4689999999999  54 7788999752 22 2232221          1111 336899999999999999999998  


Q ss_pred             ------------------hccC-eEEEEeecCc
Q psy810          139 ------------------KVAK-NVFLSHHISV  152 (227)
Q Consensus       139 ------------------~~~~-~Vtli~~~~~  152 (227)
                                        +.+. +|+++.|++.
T Consensus       168 ~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          168 PDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             GGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             hhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence                              4554 7999998654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.21  E-value=1.6e-11  Score=108.89  Aligned_cols=144  Identities=13%  Similarity=0.108  Sum_probs=96.6

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEec-CCe--eEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCC---C-
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFAN-EEI--TLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYR---V-  112 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~-~~~--~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~---~-  112 (227)
                      ..+++++++++|.++....   ..+.+.. +++  ..+.||+||+|||+  .|..|++||.+. .+ ++...+..   . 
T Consensus       172 ~~~v~~~~~~~v~~i~~~~---~~~~~~~~~~~~~~~~~~d~lvlAtGa--~~~~~~~~g~~~-~g-v~~~~~~~~~~~~  244 (493)
T 1y56_A          172 NENTKIYLETSALGVFDKG---EYFLVPVVRGDKLIEILAKRVVLATGA--IDSTMLFENNDM-PG-VFRRDFALEVMNV  244 (493)
T ss_dssp             CTTEEEETTEEECCCEECS---SSEEEEEEETTEEEEEEESCEEECCCE--EECCCCCTTTTS-TT-EEEHHHHHHHHHT
T ss_pred             hcCCEEEcCCEEEEEEcCC---cEEEEEEecCCeEEEEECCEEEECCCC--CccCCCCCCCCC-CC-EEEcHHHHHHHHh
Confidence            3466788888888776522   3444432 222  47999999999999  788888998753 22 22211111   1 


Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCC----ceEEcCCCEEeccE
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQD----SVVFQDDTSHPFDS  188 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~----~v~~~~g~~i~~D~  188 (227)
                      .....+++++|+|+|++|+|  ..+.+.|.++.  ..                ..+.++..+    .+.+.+|.++++|.
T Consensus       245 ~~~~~~~~vvViGgG~~gle--~~l~~~GV~v~--~~----------------~~v~~i~~~~~v~~v~~~~g~~i~aD~  304 (493)
T 1y56_A          245 WEVAPGRKVAVTGSKADEVI--QELERWGIDYV--HI----------------PNVKRVEGNEKVERVIDMNNHEYKVDA  304 (493)
T ss_dssp             SCBCSCSEEEEESTTHHHHH--HHHHHHTCEEE--EC----------------SSEEEEECSSSCCEEEETTCCEEECSE
T ss_pred             cccCCCCEEEEECCCHHHHH--HHHHhCCcEEE--eC----------------CeeEEEecCCceEEEEeCCCeEEEeCE
Confidence            12235689999999999999  44555554433  22                122233221    25677889999999


Q ss_pred             EEEccccccccccccccCCcccccc
Q psy810          189 IIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       189 vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ||+|+| +.|+.  .++...|+++.
T Consensus       305 Vv~a~G-~~p~~--~l~~~~g~~~~  326 (493)
T 1y56_A          305 LIFADG-RRPDI--NPITQAGGKLR  326 (493)
T ss_dssp             EEECCC-EEECC--HHHHHTTCCEE
T ss_pred             EEECCC-cCcCc--hHHHhcCCCcc
Confidence            999999 99999  89998888764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.13  E-value=8.7e-11  Score=102.33  Aligned_cols=155  Identities=11%  Similarity=0.082  Sum_probs=93.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCC-------
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPD-------  114 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~-------  114 (227)
                      ++++. ..+|++|+.     +..+|.+++++++.||+||||||+  .+. +++||.++..   ...+...+..       
T Consensus        70 gv~~i-~~~v~~Id~-----~~~~V~~~~g~~i~YD~LViAtG~--~~~-~~i~G~~e~~---~~~~~~~~a~~~~~~l~  137 (430)
T 3hyw_A           70 NIEFI-NEKAESIDP-----DANTVTTQSGKKIEYDYLVIATGP--KLV-FGAEGQEENS---TSICTAEHALETQKKLQ  137 (430)
T ss_dssp             TEEEE-CSCEEEEET-----TTTEEEETTCCEEECSEEEECCCC--EEE-CCSBTHHHHS---CCCSSHHHHHHHHHHHH
T ss_pred             CcEEE-EeEEEEEEC-----CCCEEEECCCCEEECCEEEEeCCC--Ccc-CCccCcccCc---CCcccHHHHHHHHHHHH
Confidence            44544 457888775     556788888889999999999999  544 4688865321   1111111110       


Q ss_pred             C-CCCCeEEEEccCc------cHHHHHHHH----Hhc----cCeEEEEeecCccccc---cCC-------------C--c
Q psy810          115 P-FRDQNVLLVGFGP------SGVDIAMDI----EKV----AKNVFLSHHISVAFKH---QIG-------------D--S  161 (227)
Q Consensus       115 ~-~~~~~v~VvGgG~------~g~e~a~~l----~~~----~~~Vtli~~~~~~~~~---~~~-------------~--~  161 (227)
                      + ..++.++|+|++.      .+.|++..+    .+.    ..+|++++..+ .+..   ...             .  +
T Consensus       138 ~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~l~~~GV~  216 (430)
T 3hyw_A          138 ELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEP-YLGHFGVGGIGASKRLVEDLFAERNID  216 (430)
T ss_dssp             HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSS-STTCTTTTCSTTHHHHHHHHHHHTTCE
T ss_pred             hhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccc-hhhhccchhhHHHHHHHHHHHHhCCeE
Confidence            0 1234455666542      223444333    333    34688887743 2211   011             1  3


Q ss_pred             eEEcCCccEEeCCceEEcC--C--CEEeccEEEEccccccccccccccCCcccccc
Q psy810          162 VVQKPDIKRLLQDSVVFQD--D--TSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       162 i~~~~~i~~~~~~~v~~~~--g--~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      +..+..|.+++.+++.+++  |  .++++|.+++++| .+++   +++...++.+.
T Consensus       217 ~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G-~~~~---~~~~~~~~~l~  268 (430)
T 3hyw_A          217 WIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPS-FQGP---EVVASAGDKVA  268 (430)
T ss_dssp             EECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECE-EECC---HHHHTTCTTTB
T ss_pred             EEeCceEEEEeCCceEEEeeCCCceEeecceEEEecc-CCCc---hHHHhcccccc
Confidence            3445678889888877764  3  3689999999999 9987   46666665544

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.12  E-value=1.1e-10  Score=100.46  Aligned_cols=153  Identities=10%  Similarity=-0.029  Sum_probs=96.5

Q ss_pred             CceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccce-eeecCCCCC-C-------CCCCC
Q psy810           48 GSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGL-QMHSHDYRV-P-------DPFRD  118 (227)
Q Consensus        48 ~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~-~-------~~~~~  118 (227)
                      ..+|..|+.     +...+.+.++.++.||+||+|||+  .+..|++||.++..+. ..|.....+ .       .....
T Consensus        74 ~~~v~~id~-----~~~~v~~~~g~~i~yd~LviAtG~--~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (401)
T 3vrd_B           74 HDSALGIDP-----DKKLVKTAGGAEFAYDRCVVAPGI--DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDD  146 (401)
T ss_dssp             CSCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCT
T ss_pred             EeEEEEEEc-----cCcEEEecccceeecceeeeccCC--ccccCCccCchhhcccCccceeccHHHHHHHHHHHHhccc
Confidence            457787765     456777888889999999999999  8889999997653322 222211111 0       11223


Q ss_pred             CeEEEEccCc-----------cHHHHHHHHHhc--cCeEEEEeecCcccc-------------ccC-CCce--EEcCCcc
Q psy810          119 QNVLLVGFGP-----------SGVDIAMDIEKV--AKNVFLSHHISVAFK-------------HQI-GDSV--VQKPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~-----------~g~e~a~~l~~~--~~~Vtli~~~~~~~~-------------~~~-~~~i--~~~~~i~  169 (227)
                      ...+|+++|.           .+.+++..+.+.  ..+|+++++.+....             ..+ ...+  ..+..+.
T Consensus       147 ~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~  226 (401)
T 3vrd_B          147 GGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAA  226 (401)
T ss_dssp             TCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTC
T ss_pred             CCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEE
Confidence            3344444433           234566666555  468999988543211             011 1233  3355666


Q ss_pred             EEeC----CceEEcCCCEEeccEEEEccccccccccccccCCcccc
Q psy810          170 RLLQ----DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSIS  211 (227)
Q Consensus       170 ~~~~----~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~  211 (227)
                      .++.    ..+.+.+|+++++|++++++| .+|+   .++.+.+|.
T Consensus       227 ~v~~~~~~~~v~~~~g~~i~~D~vi~~~g-~~~~---~~~~~~gl~  268 (401)
T 3vrd_B          227 VVKTDTEAMTVETSFGETFKAAVINLIPP-QRAG---KIAQSASLT  268 (401)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCC-EEEC---HHHHHTTCC
T ss_pred             EEEecccceEEEcCCCcEEEeeEEEEecC-cCCc---hhHhhcccc
Confidence            6643    248889999999999999999 9887   577777774

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.11  E-value=2.3e-10  Score=109.60  Aligned_cols=140  Identities=14%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             CeeEEEcCEEEEccCCCCCCCCCCC-CCCCcccceeeecCCC--------------CCC-CCCCCCeEEEEccCccHHHH
Q psy810           70 EITLHYNLLQSLPSSHNSVPNIPSY-EGADLFRGLQMHSHDY--------------RVP-DPFRDQNVLLVGFGPSGVDI  133 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~~p~~-~g~~~~~~~~~~~~~~--------------~~~-~~~~~~~v~VvGgG~~g~e~  133 (227)
                      ++..+.||+||||||+. .|+.+++ +|.+...+ +++..++              ++. ....+++|+|||||++|+|+
T Consensus       270 ~~~~~~~d~vvlAtGa~-~p~~l~~~~G~~~~~g-v~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~  347 (1025)
T 1gte_A          270 TLKEEGYKAAFIGIGLP-EPKTDDIFQGLTQDQG-FYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDC  347 (1025)
T ss_dssp             HHHHTTCCEEEECCCCC-EECCCGGGTTCCTTTT-EEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHH
T ss_pred             hcCccCCCEEEEecCCC-CCCCCCCCCCCCCCCC-EEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHH
Confidence            33457899999999982 2555544 45432222 2221111              111 12236799999999999999


Q ss_pred             HHHHHhccC-eEEEEeecCccccccCC--------CceEE--cCCccEEeC--Cc---eEEc------CC---------C
Q psy810          134 AMDIEKVAK-NVFLSHHISVAFKHQIG--------DSVVQ--KPDIKRLLQ--DS---VVFQ------DD---------T  182 (227)
Q Consensus       134 a~~l~~~~~-~Vtli~~~~~~~~~~~~--------~~i~~--~~~i~~~~~--~~---v~~~------~g---------~  182 (227)
                      |..+.+.|. +||+++|++..+...++        ..|++  ...+.++..  +.   +++.      +|         .
T Consensus       348 A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~  427 (1025)
T 1gte_A          348 ATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIV  427 (1025)
T ss_dssp             HHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             HHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceE
Confidence            999999985 89999996532211111        23333  233444432  21   3332      22         2


Q ss_pred             EEeccEEEEccccccc-cccccccCC-ccccccc
Q psy810          183 SHPFDSIIYCTGAYKY-SYKLTFLAT-FSISMAM  214 (227)
Q Consensus       183 ~i~~D~vi~atG~~~~-~~~~~~l~~-~gl~~~~  214 (227)
                      ++++|.||+|+| +.| +.  .++.+ .|++++.
T Consensus       428 ~i~aD~Vi~A~G-~~~~~~--~l~~~~~gl~~~~  458 (1025)
T 1gte_A          428 HLKADVVISAFG-SVLRDP--KVKEALSPIKFNR  458 (1025)
T ss_dssp             EEECSEEEECSC-EECCCH--HHHHHTTTSCBCT
T ss_pred             EEECCEEEECCC-CCCCch--hhhhcccCceECC
Confidence            589999999999 986 45  56665 4788764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.80  E-value=1.2e-08  Score=77.89  Aligned_cols=87  Identities=17%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc--------cCC--------------------CceEEcCCccEE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH--------QIG--------------------DSVVQKPDIKRL  171 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~--------~~~--------------------~~i~~~~~i~~~  171 (227)
                      +|+|||||.+|+++|..|.+.+.+|+++++.+..+..        .++                    -++... .+.++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            6999999999999999999999999999986533311        110                    133445 67777


Q ss_pred             eC--Cc--eEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          172 LQ--DS--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       172 ~~--~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ..  ++  +.+.+| ++++|.||+|+| ..|+.    ++.+|++++
T Consensus        82 ~~~~~~~~v~~~~g-~i~ad~vI~A~G-~~~~~----~~~~g~~~~  121 (180)
T 2ywl_A           82 RDMGGVFEVETEEG-VEKAERLLLCTH-KDPTL----PSLLGLTRR  121 (180)
T ss_dssp             EECSSSEEEECSSC-EEEEEEEEECCT-TCCHH----HHHHTCCEE
T ss_pred             EEcCCEEEEEECCC-EEEECEEEECCC-CCCCc----cccCCCCcc
Confidence            54  22  666677 899999999999 87753    344455554

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.50  E-value=5e-07  Score=77.41  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCccccc---------c-------------CCCceEE-cCCccEEe
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFKH---------Q-------------IGDSVVQ-KPDIKRLL  172 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~~---------~-------------~~~~i~~-~~~i~~~~  172 (227)
                      ||+|+|||+|+.|+.+|..|++.+  .+|||+++++.....         .             .+.+++. ...+..++
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~~v~~id   81 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHDSALGID   81 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence            799999999999999999998875  489999885421110         0             0123332 34567776


Q ss_pred             CC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          173 QD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       173 ~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+  .+++.+|.++.+|.+++||| .+++.
T Consensus        82 ~~~~~v~~~~g~~i~yd~LviAtG-~~~~~  110 (401)
T 3vrd_B           82 PDKKLVKTAGGAEFAYDRCVVAPG-IDLLY  110 (401)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCC-EEECG
T ss_pred             ccCcEEEecccceeecceeeeccC-Ccccc
Confidence            43  48889999999999999999 98876

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.45  E-value=7.2e-07  Score=77.46  Aligned_cols=81  Identities=15%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCccc-c---------------------ccCC-CceEE-cCCccEEe
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAF-K---------------------HQIG-DSVVQ-KPDIKRLL  172 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~-~---------------------~~~~-~~i~~-~~~i~~~~  172 (227)
                      |+|+|||||+.|+.+|..|++.+  .+|||+++++... .                     ..++ .+++. ...+.+++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id   82 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID   82 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence            68999999999999999999875  5899999854211 0                     0011 13433 34577776


Q ss_pred             C--CceEEcCCCEEeccEEEEccccccccc
Q psy810          173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .  +.|++++|+++++|.+|+||| .++..
T Consensus        83 ~~~~~V~~~~g~~i~YD~LViAtG-~~~~~  111 (430)
T 3hyw_A           83 PDANTVTTQSGKKIEYDYLVIATG-PKLVF  111 (430)
T ss_dssp             TTTTEEEETTCCEEECSEEEECCC-CEEEC
T ss_pred             CCCCEEEECCCCEEECCEEEEeCC-CCccC
Confidence            4  358999999999999999999 77654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.40  E-value=9.9e-07  Score=75.62  Aligned_cols=85  Identities=11%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc-cc-ccC--------C--------------Cce--EEcCCccEEe
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA-FK-HQI--------G--------------DSV--VQKPDIKRLL  172 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~-~~-~~~--------~--------------~~i--~~~~~i~~~~  172 (227)
                      -+|+|||||.+|+.+|..|...+.+|+|+.+.+.. +. ..+        +              .++  ...+.+.+++
T Consensus        10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id   89 (385)
T 3klj_A           10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID   89 (385)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred             CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence            46999999999999999997778899999885421 10 000        0              123  3355677776


Q ss_pred             CC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          173 QD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       173 ~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .+  .|++++|+++.+|.+|+||| .+|..  +-++
T Consensus        90 ~~~~~v~~~~g~~~~yd~lvlAtG-~~p~~--p~i~  122 (385)
T 3klj_A           90 PNNKLVTLKSGEKIKYEKLIIASG-SIANK--IKVP  122 (385)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCC-EEECC--CCCT
T ss_pred             CCCCEEEECCCCEEECCEEEEecC-CCcCC--CCCC
Confidence            43  48889999999999999999 88877  5444

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.31  E-value=3e-06  Score=73.61  Aligned_cols=85  Identities=14%  Similarity=0.255  Sum_probs=63.0

Q ss_pred             CeEEEEccCccHHHHHHHHHh---ccCeEEEEeecCccc-cc--------cC--------------CCceEE-cCCccEE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHISVAF-KH--------QI--------------GDSVVQ-KPDIKRL  171 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~~~~~-~~--------~~--------------~~~i~~-~~~i~~~  171 (227)
                      ++|+|||||.+|+.+|..|++   .+.+|+|+++.+... ..        ..              ..++.. ...+..+
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~i   84 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI   84 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEEE
Confidence            689999999999999999999   688999999854321 00        00              013332 3456677


Q ss_pred             eCC--ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          172 LQD--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       172 ~~~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +.+  .|++++|.++.+|.+|+||| .+++.  +-++
T Consensus        85 d~~~~~V~~~~g~~i~~d~lviAtG-~~~~~--~~ip  118 (437)
T 3sx6_A           85 DAEAQNITLADGNTVHYDYLMIATG-PKLAF--ENVP  118 (437)
T ss_dssp             ETTTTEEEETTSCEEECSEEEECCC-CEECG--GGST
T ss_pred             EcCCCEEEECCCCEEECCEEEECCC-CCcCc--ccCC
Confidence            653  48888998999999999999 88887  5444

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.31  E-value=2.8e-06  Score=73.03  Aligned_cols=81  Identities=12%  Similarity=0.297  Sum_probs=59.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc------ccc-cC-----C-------------CceEE-cCCccE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA------FKH-QI-----G-------------DSVVQ-KPDIKR  170 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~------~~~-~~-----~-------------~~i~~-~~~i~~  170 (227)
                      ++|+|||+|.+|+.+|..|++.+.  +|+|+.+.+..      +.. .+     +             .++.. ...+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~   81 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVS   81 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEE
Confidence            689999999999999999999987  89999885411      110 00     0             12222 145666


Q ss_pred             EeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          171 LLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       171 ~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ++.+  .+.+.+|..+.+|.+|+||| ..|..
T Consensus        82 id~~~~~v~~~~g~~~~~d~lvlAtG-~~p~~  112 (404)
T 3fg2_P           82 IDREGRKLLLASGTAIEYGHLVLATG-ARNRM  112 (404)
T ss_dssp             EETTTTEEEESSSCEEECSEEEECCC-EEECC
T ss_pred             EECCCCEEEECCCCEEECCEEEEeeC-CCccC
Confidence            6543  48888999999999999999 88776

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.30  E-value=2.7e-06  Score=69.24  Aligned_cols=85  Identities=15%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc--cc---ccCC---------------------CceEE-cCCccEE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA--FK---HQIG---------------------DSVVQ-KPDIKRL  171 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~--~~---~~~~---------------------~~i~~-~~~i~~~  171 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+|+++....  +.   ..++                     ..+.. ...+..+
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i   82 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDA   82 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEE
Confidence            46999999999999999999999999999974211  00   0011                     12333 3456666


Q ss_pred             eCC----ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          172 LQD----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       172 ~~~----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      +.+    .+.+.+|.++.+|.+|+||| ..|..  +-++
T Consensus        83 ~~~~~~~~v~~~~g~~~~~d~vviAtG-~~~~~--~~~~  118 (297)
T 3fbs_A           83 KGSFGEFIVEIDGGRRETAGRLILAMG-VTDEL--PEIA  118 (297)
T ss_dssp             EEETTEEEEEETTSCEEEEEEEEECCC-CEEEC--CCCB
T ss_pred             EEcCCeEEEEECCCCEEEcCEEEECCC-CCCCC--CCCC
Confidence            432    37778888999999999999 88876  5443

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.29  E-value=2.2e-06  Score=73.63  Aligned_cols=81  Identities=12%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             CeEEEEccCccHHHHHHHHHh---ccCeEEEEeecCccccc-cC---------CC-------------ceEE-cCCccEE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHISVAFKH-QI---------GD-------------SVVQ-KPDIKRL  171 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~~~~~~~-~~---------~~-------------~i~~-~~~i~~~  171 (227)
                      ++|+|||||.+|+.+|..|++   .+.+|+|+++.+..... .+         +.             ++.. ...+..+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i   81 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI   81 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence            579999999999999999999   78999999985432100 00         01             1221 1245556


Q ss_pred             eCC--ceEEcCCCE----EeccEEEEccccccccc
Q psy810          172 LQD--SVVFQDDTS----HPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       172 ~~~--~v~~~~g~~----i~~D~vi~atG~~~~~~  200 (227)
                      +.+  .|++.+|+.    +.+|.||+||| ..|+.
T Consensus        82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG-~~~~~  115 (409)
T 3h8l_A           82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIG-AHLAT  115 (409)
T ss_dssp             ETTTTEEEEECTTSCEEEEECSEEEECCC-CEECG
T ss_pred             eCCCCEEEEccCCcccceeeCCEEEECCC-CCcCc
Confidence            543  577777764    89999999999 88876

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.26  E-value=5.2e-06  Score=71.54  Aligned_cols=81  Identities=17%  Similarity=0.273  Sum_probs=60.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCe--EEEEeecCcc------ccc-----cC-C--------------CceEEcCCccE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKN--VFLSHHISVA------FKH-----QI-G--------------DSVVQKPDIKR  170 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~--Vtli~~~~~~------~~~-----~~-~--------------~~i~~~~~i~~  170 (227)
                      ++|+|||+|.+|+.+|..|++.+.+  |+++.+.+..      +..     .. +              -++...+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~   82 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA   82 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence            4799999999999999999999876  9999885421      110     00 0              02233446667


Q ss_pred             EeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          171 LLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       171 ~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ++.+  .+.+.+|.++.+|.+|+||| ..|..
T Consensus        83 id~~~~~v~~~~g~~~~~d~lvlAtG-~~p~~  113 (410)
T 3ef6_A           83 LDVQTRTISLDDGTTLSADAIVIATG-SRART  113 (410)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCC-EEECC
T ss_pred             EECCCCEEEECCCCEEECCEEEEccC-CcccC
Confidence            7643  48888999999999999999 88876

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.22  E-value=5.1e-06  Score=71.59  Aligned_cols=82  Identities=17%  Similarity=0.298  Sum_probs=60.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCe--EEEEeecCcc------cccc-CC------------------Cce--EEcCCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKN--VFLSHHISVA------FKHQ-IG------------------DSV--VQKPDI  168 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~--Vtli~~~~~~------~~~~-~~------------------~~i--~~~~~i  168 (227)
                      .++|+|||+|.+|+.+|..|++.+.+  |+++.+.+..      +... +.                  .++  .....+
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v   88 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV   88 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence            35799999999999999999998876  9999885321      1100 10                  122  234466


Q ss_pred             cEEeCC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          169 KRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       169 ~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ..++.+  .+.+.+|..+.+|.+|+||| ..|..
T Consensus        89 ~~id~~~~~v~~~~g~~~~~d~lvlAtG-~~~~~  121 (415)
T 3lxd_A           89 VSLDPAAHTVKLGDGSAIEYGKLIWATG-GDPRR  121 (415)
T ss_dssp             EEEETTTTEEEETTSCEEEEEEEEECCC-EECCC
T ss_pred             EEEECCCCEEEECCCCEEEeeEEEEccC-CccCC
Confidence            677654  48888999999999999999 88876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.22  E-value=1.3e-06  Score=69.40  Aligned_cols=80  Identities=20%  Similarity=0.190  Sum_probs=56.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc-------------------------------ccc----ccCC--Cc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV-------------------------------AFK----HQIG--DS  161 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~-------------------------------~~~----~~~~--~~  161 (227)
                      -.|+|||||.+|+++|..|++.+.+|+++++...                               .+.    ..+.  .+
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            3699999999999999999999999999998511                               000    0011  13


Q ss_pred             eEE-cCCccEEeC--C---ceEEcCCCEEeccEEEEcccccccc
Q psy810          162 VVQ-KPDIKRLLQ--D---SVVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       162 i~~-~~~i~~~~~--~---~v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                      +.+ ...+.++..  +   ++.+.+|.++.+|.||+|+| ...+
T Consensus        84 v~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G-~~s~  126 (232)
T 2cul_A           84 LHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVG-SFLG  126 (232)
T ss_dssp             EEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCT-TCSS
T ss_pred             cEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCC-CChh
Confidence            332 345666642  2   36677888899999999999 7443

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=5.7e-06  Score=70.32  Aligned_cols=85  Identities=18%  Similarity=0.364  Sum_probs=59.6

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc-cc---------cc-----C-C--------CceEE--cCCccE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA-FK---------HQ-----I-G--------DSVVQ--KPDIKR  170 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~-~~---------~~-----~-~--------~~i~~--~~~i~~  170 (227)
                      .+.+|+|||+|+.|+.+|..|++.+ +|+|+++.+.. +.         ..     + .        .++..  ...+..
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            3678999999999999999999999 99999985421 00         00     0 0        02332  334666


Q ss_pred             EeCCc--eEEcCCCEEeccEEEEccccccccccccccC
Q psy810          171 LLQDS--VVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       171 ~~~~~--v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ++.+.  |. .+|.++.+|.+|+||| .+|+.  +-++
T Consensus        86 id~~~~~V~-~~g~~~~~d~lViATG-s~p~~--p~i~  119 (367)
T 1xhc_A           86 IDRGRKVVI-TEKGEVPYDTLVLATG-ARARE--PQIK  119 (367)
T ss_dssp             EETTTTEEE-ESSCEEECSEEEECCC-EEECC--CCSB
T ss_pred             EECCCCEEE-ECCcEEECCEEEECCC-CCCCC--CCCC
Confidence            66443  55 6788899999999999 98887  5444

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.11  E-value=1.1e-05  Score=69.89  Aligned_cols=85  Identities=20%  Similarity=0.330  Sum_probs=61.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-c-----cccCC-------------------CceEE--cCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-F-----KHQIG-------------------DSVVQ--KPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~-----~~~~~-------------------~~i~~--~~~i~  169 (227)
                      .+|+|||+|..|+.+|..|++.+.  +|+|+++.+.. +     ...+.                   .++.+  ...+.
T Consensus         5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   84 (431)
T 1q1r_A            5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVT   84 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCEE
T ss_pred             CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEEE
Confidence            579999999999999999999886  79999874321 1     11000                   12332  34566


Q ss_pred             EEeC--CceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          170 RLLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .++.  ..|.+.+|.++.+|.+|+||| ..|+.  +-++
T Consensus        85 ~i~~~~~~v~~~~g~~~~~d~lviAtG-~~p~~--~~i~  120 (431)
T 1q1r_A           85 AINRDRQQVILSDGRALDYDRLVLATG-GRPRP--LPVA  120 (431)
T ss_dssp             EEETTTTEEEETTSCEEECSEEEECCC-EEECC--CGGG
T ss_pred             EEECCCCEEEECCCCEEECCEEEEcCC-CCccC--CCCC
Confidence            6654  347888888999999999999 88877  5444

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.10  E-value=1.3e-05  Score=65.91  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec--Ccccc-------ccC-------------------CCceEEcCCccE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI--SVAFK-------HQI-------------------GDSVVQKPDIKR  170 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~--~~~~~-------~~~-------------------~~~i~~~~~i~~  170 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+|+++.  .....       ..+                   .-++.. ..+..
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            57999999999999999999999999999984  11000       000                   113333 55666


Q ss_pred             EeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810          171 LLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       171 ~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      +..+    .+.+.+|..+.+|.+|+||| ..|..
T Consensus        95 i~~~~~~~~v~~~~g~~~~~d~lvlAtG-~~~~~  127 (323)
T 3f8d_A           95 IENRGDEFVVKTKRKGEFKADSVILGIG-VKRRK  127 (323)
T ss_dssp             EEEC--CEEEEESSSCEEEEEEEEECCC-CEECC
T ss_pred             EEecCCEEEEEECCCCEEEcCEEEECcC-CCCcc
Confidence            6533    26677888999999999999 88776

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.01  E-value=1.3e-05  Score=69.81  Aligned_cols=86  Identities=13%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--cccCC-----------------------CceE--EcCCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--KHQIG-----------------------DSVV--QKPDI  168 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--~~~~~-----------------------~~i~--~~~~i  168 (227)
                      .++|+|||+|.+|+.+|..|++.  +.+|+++++.+...  ...++                       .++.  ....+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            36899999999999999999998  77999999854210  00000                       1122  22345


Q ss_pred             cEEeCCc--eEEcCC-CEEeccEEEEccccccccccccccC
Q psy810          169 KRLLQDS--VVFQDD-TSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       169 ~~~~~~~--v~~~~g-~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..++.+.  +.+.+| ..+.+|.+|+||| ..|..  +-++
T Consensus        83 ~~i~~~~~~v~~~~g~~~~~~d~lviAtG-~~p~~--p~i~  120 (449)
T 3kd9_A           83 IEVDTGYVRVRENGGEKSYEWDYLVFANG-ASPQV--PAIE  120 (449)
T ss_dssp             EEECSSEEEEECSSSEEEEECSEEEECCC-EEECC--CSCB
T ss_pred             EEEecCCCEEEECCceEEEEcCEEEECCC-CCCCC--CCCC
Confidence            5554433  444455 3689999999999 88876  5444

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.00  E-value=2.2e-05  Score=65.21  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=56.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---c---------cc---------------------cCCCceEEc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---F---------KH---------------------QIGDSVVQK  165 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~---------~~---------------------~~~~~i~~~  165 (227)
                      .+|+|||+|.+|+.+|..|.+.+.+|+|+++.+..   +         ..                     .+...+..+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            47999999999999999999999999999985321   0         00                     001133345


Q ss_pred             CCccEEeCC--c--eEEcCCCEEeccEEEEcccccc
Q psy810          166 PDIKRLLQD--S--VVFQDDTSHPFDSIIYCTGAYK  197 (227)
Q Consensus       166 ~~i~~~~~~--~--v~~~~g~~i~~D~vi~atG~~~  197 (227)
                      ..+..+..+  .  +.+.+|.++.+|.||+||| ..
T Consensus        86 ~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG-~~  120 (335)
T 2zbw_A           86 ERAETLEREGDLFKVTTSQGNAYTAKAVIIAAG-VG  120 (335)
T ss_dssp             CCEEEEEEETTEEEEEETTSCEEEEEEEEECCT-TS
T ss_pred             CEEEEEEECCCEEEEEECCCCEEEeCEEEECCC-CC
Confidence            567666532  2  6666788899999999999 73

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.00  E-value=2.8e-05  Score=63.95  Aligned_cols=84  Identities=15%  Similarity=0.297  Sum_probs=56.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCcc--c-cc--cCC---------------------CceEE-cCCccEEe
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA--F-KH--QIG---------------------DSVVQ-KPDIKRLL  172 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~--~-~~--~~~---------------------~~i~~-~~~i~~~~  172 (227)
                      .|+|||+|+.|+.+|..+++.+.+|+|+++....  + ..  .++                     ..+.. ...+..+.
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT   87 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence            3999999999999999999999999999874210  0 00  000                     01111 11222221


Q ss_pred             --CC---ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          173 --QD---SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       173 --~~---~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                        .+   .+.+.+|+++.+|.||+||| .+|..  +-++
T Consensus        88 ~~~~~~~~v~~~~g~~~~a~~liiATG-s~p~~--p~i~  123 (304)
T 4fk1_A           88 KQSTGLFEIVTKDHTKYLAERVLLATG-MQEEF--PSIP  123 (304)
T ss_dssp             ECTTSCEEEEETTCCEEEEEEEEECCC-CEEEC--CSCT
T ss_pred             ecCCCcEEEEECCCCEEEeCEEEEccC-Ccccc--cccc
Confidence              11   26778899999999999999 88877  5444

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.99  E-value=1.7e-05  Score=70.33  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||||+.|+.+|..|.+.+.+|||+++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            3589999999999999999988888999999854

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.99  E-value=1.5e-05  Score=65.78  Aligned_cols=80  Identities=16%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---ccc------------------------------cCCCceEEc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---FKH------------------------------QIGDSVVQK  165 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~~~------------------------------~~~~~i~~~  165 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+|+++.+..   +..                              .+.-.+...
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            47999999999999999999999999999985310   100                              001123335


Q ss_pred             CCccEEeC--C---ceEEcCCCEEeccEEEEccccc---cccc
Q psy810          166 PDIKRLLQ--D---SVVFQDDTSHPFDSIIYCTGAY---KYSY  200 (227)
Q Consensus       166 ~~i~~~~~--~---~v~~~~g~~i~~D~vi~atG~~---~~~~  200 (227)
                      ..+..+..  +   .+.+.+|+ +.+|.||+||| .   .|..
T Consensus        88 ~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG-~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADGVFKLVTNEET-HYSKTVIITAG-NGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTSCEEEEESSEE-EEEEEEEECCT-TSCCEECC
T ss_pred             CEEEEEEECCCCcEEEEECCCE-EEeCEEEECCC-CCcCCCCC
Confidence            66766643  2   35666665 99999999999 8   6665

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.96  E-value=4.1e-05  Score=63.06  Aligned_cols=84  Identities=12%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc---cccc----cCCC----------------------ceEEcCCccE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV---AFKH----QIGD----------------------SVVQKPDIKR  170 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~---~~~~----~~~~----------------------~i~~~~~i~~  170 (227)
                      .|+|||+|+.|+.+|..+++.+.+|+|+++...   .++.    .+|.                      .+........
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            499999999999999999999999999987421   1110    0110                      1111111211


Q ss_pred             EeC--CceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          171 LLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       171 ~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ...  ..+...++.++.+|.+|+||| .+|..  +-++
T Consensus        88 ~~~~~~~~~~~~~~~~~~d~liiAtG-s~~~~--~~ip  122 (312)
T 4gcm_A           88 EDKGEYKVINFGNKELTAKAVIIATG-AEYKK--IGVP  122 (312)
T ss_dssp             EECSSCEEEECSSCEEEEEEEEECCC-EEECC--CCCT
T ss_pred             eeeecceeeccCCeEEEeceeEEccc-CccCc--CCCC
Confidence            211  235566788999999999999 88876  5444

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.96  E-value=1.8e-05  Score=65.87  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+++++.+
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~   36 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA   36 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            369999999999999999999999999999853

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.93  E-value=1.6e-05  Score=65.77  Aligned_cols=85  Identities=16%  Similarity=0.291  Sum_probs=58.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC----c---cccc--------cCCC--------------------ce
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS----V---AFKH--------QIGD--------------------SV  162 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~----~---~~~~--------~~~~--------------------~i  162 (227)
                      .++|+|||+|.+|+.+|..|++.+.+|+|+++.+    .   .+..        .++.                    .+
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            4689999999999999999999999999999832    0   0000        1111                    22


Q ss_pred             EEcCCccEEeCC--ceEE-----cCCCEEeccEEEEccccccccccccccC
Q psy810          163 VQKPDIKRLLQD--SVVF-----QDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       163 ~~~~~i~~~~~~--~v~~-----~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ...+ +..++.+  .+.+     .++..+.+|.+|+|+| ..+..  +-++
T Consensus       102 ~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG-~~~~~--~~~~  148 (338)
T 3itj_A          102 ITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATG-ASAKR--MHLP  148 (338)
T ss_dssp             ECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCC-EEECC--CCCT
T ss_pred             EEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcC-CCcCC--CCCC
Confidence            2233 5566543  3433     3667899999999999 88776  5443

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.91  E-value=4e-05  Score=62.90  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc---ccccc------------CCCce------------------EE-c
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV---AFKHQ------------IGDSV------------------VQ-K  165 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~---~~~~~------------~~~~i------------------~~-~  165 (227)
                      .|+|||+|+.|+.+|..+++.+.+|+++++...   .+...            ++..+                  .. .
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            499999999999999999999999999987421   01110            11111                  11 1


Q ss_pred             CCccEEeCC----ceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          166 PDIKRLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       166 ~~i~~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..+......    .+.+.++.++.+|.+|+||| ..|..  +-++
T Consensus        86 ~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG-~~~~~--~~ip  127 (314)
T 4a5l_A           86 ETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATG-ATAKR--MHVP  127 (314)
T ss_dssp             CCEEEEECSSSSEEEEETTCCEEEEEEEEECCC-EEECC--CCCT
T ss_pred             eEEEEeecCCCceEEEECCCeEEEEeEEEEccc-ccccc--cCCC
Confidence            122222221    25567788899999999999 88876  5555

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.90  E-value=5.4e-05  Score=62.04  Aligned_cols=80  Identities=21%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC-ccccc-----cC--------------------CCce--EEcCCccEE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS-VAFKH-----QI--------------------GDSV--VQKPDIKRL  171 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~-~~~~~-----~~--------------------~~~i--~~~~~i~~~  171 (227)
                      +|+|||+|++|+.+|..|++.+.+|+++.++. ..+..     .+                    ..++  .....+..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            58999999999999999999999999996531 00100     00                    0122  233466666


Q ss_pred             eCC-------ceEEcCCCEEeccEEEEccccccccc
Q psy810          172 LQD-------SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       172 ~~~-------~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ..+       .+.+.+|.++.+|.+|+|+| ..|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG-~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATG-AKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCC-EEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcC-CCcCC
Confidence            432       26677888899999999999 87765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.90  E-value=6e-05  Score=64.84  Aligned_cols=82  Identities=12%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC--eEEEEeecCcc-c-----ccc--------------C-CCce--EEcCCccEEe
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHISVA-F-----KHQ--------------I-GDSV--VQKPDIKRLL  172 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~~~-~-----~~~--------------~-~~~i--~~~~~i~~~~  172 (227)
                      ..+|+|||+|..|+.+|..|++.+.  +|+++++.+.. +     ...              + ..++  .....+..++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~   86 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD   86 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence            3579999999999999999999876  59999885321 1     100              0 0122  2234466665


Q ss_pred             C--CceEEcCCCEEeccEEEEccccccccc
Q psy810          173 Q--DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       173 ~--~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .  ..|.+.+|.++.+|.+|+||| ..|..
T Consensus        87 ~~~~~v~~~~g~~~~~d~lviAtG-~~~~~  115 (408)
T 2gqw_A           87 PQAHTVALSDGRTLPYGTLVLATG-AAPRA  115 (408)
T ss_dssp             TTTTEEEETTSCEEECSEEEECCC-EEECC
T ss_pred             CCCCEEEECCCCEEECCEEEECCC-CCCCC
Confidence            4  347788888999999999999 88876

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.90  E-value=3.5e-05  Score=67.50  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=54.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc------cc----c------cC-------C---------CceE
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA------FK----H------QI-------G---------DSVV  163 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~------~~----~------~~-------~---------~~i~  163 (227)
                      .++|+|||+|.+|+.+|..|++.  +.+|+|+++.+..      +.    .      .+       .         .++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  8899999985431      00    0      00       0         0111


Q ss_pred             --EcCCccEEeCC--ceEEcC---CC--EEeccEEEEccccccccc
Q psy810          164 --QKPDIKRLLQD--SVVFQD---DT--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       164 --~~~~i~~~~~~--~v~~~~---g~--~i~~D~vi~atG~~~~~~  200 (227)
                        ....+..++.+  .+.+.+   |.  .+.+|.+|+||| .+|..
T Consensus        83 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG-~~p~~  127 (472)
T 3iwa_A           83 ALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALG-SKANR  127 (472)
T ss_dssp             EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC-EEECC
T ss_pred             EEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCC-CCcCC
Confidence              22345555432  355544   66  689999999999 88876

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.89  E-value=3.2e-05  Score=69.20  Aligned_cols=85  Identities=13%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-cc---------ccCC----------------CceE--EcCCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-FK---------HQIG----------------DSVV--QKPDI  168 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~~---------~~~~----------------~~i~--~~~~i  168 (227)
                      ++|+|||||.+|+.+|..|++.  +.+|+|+.+.+.. +.         ....                .++.  ....+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V   81 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV   81 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence            5799999999999999999998  7899999985431 00         0000                0222  24456


Q ss_pred             cEEeCC--ceEEcC---CC--EEeccEEEEccccccccccccccC
Q psy810          169 KRLLQD--SVVFQD---DT--SHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       169 ~~~~~~--~v~~~~---g~--~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..++.+  .+.+.+   |.  ++.+|.+|+||| .+|..  +-++
T Consensus        82 ~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG-~~p~~--p~ip  123 (565)
T 3ntd_A           82 VAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPG-AAPIV--PPIP  123 (565)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCC-EEECC--CCCT
T ss_pred             EEEECCCCEEEEEecCCCCeEEEECCEEEECCC-CCCCC--CCCC
Confidence            666543  355543   55  689999999999 88876  5443

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.85  E-value=4.9e-05  Score=66.22  Aligned_cols=81  Identities=12%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCccc--cc--------cCC---------------Cce--EEcCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVAF--KH--------QIG---------------DSV--VQKPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~~--~~--------~~~---------------~~i--~~~~~i~  169 (227)
                      ++|+|||||.+|+.+|..|++.  +.+|+|+++.+..-  ..        ...               .++  .....+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5799999999999999999998  88999998854210  00        000               022  2234555


Q ss_pred             EEeCC--ceEEc---CCCEEeccEEEEccccccccc
Q psy810          170 RLLQD--SVVFQ---DDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~--~v~~~---~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .++.+  .+.+.   ++..+.+|.+|+||| .+|..
T Consensus        83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG-~~p~~  117 (452)
T 3oc4_A           83 AMDVENQLIAWTRKEEQQWYSYDKLILATG-ASQFS  117 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEECSEEEECCC-CCBCC
T ss_pred             EEECCCCEEEEEecCceEEEEcCEEEECCC-cccCC
Confidence            66543  34442   455789999999999 88876

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.84  E-value=2.6e-05  Score=67.98  Aligned_cols=32  Identities=28%  Similarity=0.585  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-----CeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-----KNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-----~~Vtli~~~~  151 (227)
                      .|+|||+|++|+-+|..|++.+     .+|+++++.+
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            6999999999999999999998     8999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.83  E-value=4.7e-05  Score=67.18  Aligned_cols=82  Identities=16%  Similarity=0.231  Sum_probs=57.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-c-----cccC-------------------------------
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-F-----KHQI-------------------------------  158 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~-----~~~~-------------------------------  158 (227)
                      ..+|+|||+|..|+.+|..|++.  +.+|+|+.+.+.. +     +..+                               
T Consensus        11 ~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (493)
T 1m6i_A           11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF   90 (493)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred             cCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchHh
Confidence            35799999999999999999877  7899999885321 0     0000                               


Q ss_pred             -----------CCceE--EcCCccEEeC--CceEEcCCCEEeccEEEEccccccccc
Q psy810          159 -----------GDSVV--QKPDIKRLLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       159 -----------~~~i~--~~~~i~~~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                                 ..++.  ....+..++.  ..|.+.+|+++.+|.+|+||| .+|..
T Consensus        91 ~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATG-s~p~~  146 (493)
T 1m6i_A           91 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATG-GTPRS  146 (493)
T ss_dssp             SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCC-EEECC
T ss_pred             hcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCC-CCCCC
Confidence                       01122  2234555542  347888899999999999999 88865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.83  E-value=6.6e-05  Score=62.06  Aligned_cols=81  Identities=14%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc------c--cCCC------------------ceEE-cCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK------H--QIGD------------------SVVQ-KPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~------~--~~~~------------------~i~~-~~~i~  169 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+|+++...  .+.      .  .++.                  ++.. ...+.
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v~   88 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEMDEVQ   88 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEeeeEE
Confidence            4799999999999999999999999999998521  000      0  0110                  1111 13455


Q ss_pred             EEeCC-------ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQD-------SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~-------~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .++.+       .+.+.+|..+.+|.+|+||| ..|..
T Consensus        89 ~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG-~~~~~  125 (325)
T 2q7v_A           89 GVQHDATSHPYPFTVRGYNGEYRAKAVILATG-ADPRK  125 (325)
T ss_dssp             EEEECTTSSSCCEEEEESSCEEEEEEEEECCC-EEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEeCEEEECcC-CCcCC
Confidence            55322       35667888899999999999 87766

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.83  E-value=4.3e-05  Score=66.45  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC--eEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~  150 (227)
                      .++|+|||+|.+|+.+|..|++.+.  +|+++++.
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~   40 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   40 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC
Confidence            4689999999999999999999998  99999985

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.82  E-value=7.4e-05  Score=67.24  Aligned_cols=83  Identities=10%  Similarity=0.266  Sum_probs=58.4

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc----------cccc-------C-----------CCceEEcC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA----------FKHQ-------I-----------GDSVVQKP  166 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~----------~~~~-------~-----------~~~i~~~~  166 (227)
                      ..++|+|||||.+|+.+|..|++.  +.+|+|+++.+..          +...       +           .-.+....
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~  114 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS  114 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence            357899999999999999999998  7899999986431          0000       0           01222344


Q ss_pred             CccEEeCC--ceEEc---CCC--EEeccEEEEccccccccc
Q psy810          167 DIKRLLQD--SVVFQ---DDT--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       167 ~i~~~~~~--~v~~~---~g~--~i~~D~vi~atG~~~~~~  200 (227)
                      .+..++.+  .+.+.   +|.  .+.+|.+|+||| ..|..
T Consensus       115 ~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG-~~p~~  154 (588)
T 3ics_A          115 EVVKINKEEKTITIKNVTTNETYNEAYDVLILSPG-AKPIV  154 (588)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCC-EEECC
T ss_pred             EEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCC-CCCCC
Confidence            56666543  35553   566  679999999999 88876

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.81  E-value=6e-05  Score=63.31  Aligned_cols=78  Identities=12%  Similarity=0.211  Sum_probs=56.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---c----c-----c--cC-------------------CCceEEc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---F----K-----H--QI-------------------GDSVVQK  165 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~----~-----~--~~-------------------~~~i~~~  165 (227)
                      .+|+|||+|.+|+.+|..|.+.+.+|+|+++.+..   +    .     .  .+                   ...+...
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   94 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVLN   94 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEcC
Confidence            57999999999999999999999999999985321   0    0     0  00                   1123334


Q ss_pred             CCccEEeC--C---ceEEcCCCEEeccEEEEcccccc
Q psy810          166 PDIKRLLQ--D---SVVFQDDTSHPFDSIIYCTGAYK  197 (227)
Q Consensus       166 ~~i~~~~~--~---~v~~~~g~~i~~D~vi~atG~~~  197 (227)
                      ..|..+..  +   .|.+.+|.++.+|.+|+|+| ..
T Consensus        95 ~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG-~~  130 (360)
T 3ab1_A           95 ETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAG-LG  130 (360)
T ss_dssp             CCEEEEEECTTSCEEEEETTSCEEEEEEEEECCT-TC
T ss_pred             CEEEEEEECCCceEEEEECCCcEEEeeEEEEccC-CC
Confidence            56766653  2   26677888899999999999 73

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.80  E-value=5.8e-05  Score=67.51  Aligned_cols=77  Identities=13%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc----------------------------------ccccCC-----
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA----------------------------------FKHQIG-----  159 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~----------------------------------~~~~~~-----  159 (227)
                      .+|+|||+|.+|+.+|..|.+.+.+|+|+++.+..                                  +...++     
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            47999999999999999999999999999985321                                  000000     


Q ss_pred             --------------CceEEcCCccEEe--CC----ceEEcCCCEEeccEEEEccccc
Q psy810          160 --------------DSVVQKPDIKRLL--QD----SVVFQDDTSHPFDSIIYCTGAY  196 (227)
Q Consensus       160 --------------~~i~~~~~i~~~~--~~----~v~~~~g~~i~~D~vi~atG~~  196 (227)
                                    ..+.....|.++.  ++    .|++.+|+++.+|.||+|+| .
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG-~  145 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATG-P  145 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCC-S
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcC-C
Confidence                          1445566676664  22    47788888999999999999 5

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.75  E-value=0.00013  Score=65.36  Aligned_cols=77  Identities=12%  Similarity=0.144  Sum_probs=57.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---c--c-----------------------------ccCC-----
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---F--K-----------------------------HQIG-----  159 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~--~-----------------------------~~~~-----  159 (227)
                      .+|+|||+|.+|+.+|..|.+.+.+|+|+++.+..   +  +                             ..++     
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            47999999999999999999999999999984311   0  0                             0000     


Q ss_pred             --------------CceEEcCCccEEe--CC----ceEEcCCCEEeccEEEEccccc
Q psy810          160 --------------DSVVQKPDIKRLL--QD----SVVFQDDTSHPFDSIIYCTGAY  196 (227)
Q Consensus       160 --------------~~i~~~~~i~~~~--~~----~v~~~~g~~i~~D~vi~atG~~  196 (227)
                                    ..+..+..|.++.  ++    .|++.+|+++.+|.||+||| .
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG-~  157 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAG-P  157 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC-S
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcC-C
Confidence                          1445566676663  33    47788999999999999999 5

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.75  E-value=0.0001  Score=65.90  Aligned_cols=77  Identities=9%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CeEEEEccCccHHHHHHHHH-hccCeEEEEeecCcc---c--c---c---------------------------------
Q psy810          119 QNVLLVGFGPSGVDIAMDIE-KVAKNVFLSHHISVA---F--K---H---------------------------------  156 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~-~~~~~Vtli~~~~~~---~--~---~---------------------------------  156 (227)
                      .+|+|||+|.+|+.+|..|+ +.|.+|+|+++.+..   +  +   .                                 
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            46999999999999999999 889999999984311   0  0   0                                 


Q ss_pred             ----------cC--CCceEEcCCccEEe--CC----ceEEcCCCEEeccEEEEccccc
Q psy810          157 ----------QI--GDSVVQKPDIKRLL--QD----SVVFQDDTSHPFDSIIYCTGAY  196 (227)
Q Consensus       157 ----------~~--~~~i~~~~~i~~~~--~~----~v~~~~g~~i~~D~vi~atG~~  196 (227)
                                .+  ...+..++.|.++.  ++    .|++.+|+++.+|.||+|+| .
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG-~  145 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVG-L  145 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCC-S
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCc-c
Confidence                      00  01455566776664  33    37788899999999999999 5

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.74  E-value=8e-05  Score=61.04  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccC-eEEEEeecCc--ccc--------ccCC------------------CceEE-cCCcc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISV--AFK--------HQIG------------------DSVVQ-KPDIK  169 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~--~~~--------~~~~------------------~~i~~-~~~i~  169 (227)
                      +|+|||+|.+|+.+|..|.+.+. +|+++++...  .+.        ..++                  .++.. ...+.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v~   82 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAVQ   82 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEECSCEE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence            69999999999999999999999 9999987421  000        0011                  01221 13455


Q ss_pred             EEe--CC--ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLL--QD--SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~--~~--~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+.  .+  .+.+.+|..+.+|.+|+|+| ..|..
T Consensus        83 ~i~~~~~~~~v~~~~g~~~~~~~vv~AtG-~~~~~  116 (311)
T 2q0l_A           83 RVSKKDSHFVILAEDGKTFEAKSVIIATG-GSPKR  116 (311)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEEEEECCC-EEECC
T ss_pred             EEEEcCCEEEEEEcCCCEEECCEEEECCC-CCCCC
Confidence            553  23  36677888899999999999 88776

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.73  E-value=0.0001  Score=64.02  Aligned_cols=84  Identities=13%  Similarity=0.233  Sum_probs=55.2

Q ss_pred             eEEEEccCccHHHHHHHHHhcc--CeEEEEeecCcc-cc---------ccCC----------------Cc--eEEcCCcc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVA-FK---------HQIG----------------DS--VVQKPDIK  169 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~-~~---------~~~~----------------~~--i~~~~~i~  169 (227)
                      +|+|||+|+.|+.+|..|++.+  .+|+|+++.+.. +.         ....                .+  +.....+.
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~   81 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI   81 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence            5999999999999999999887  469999885321 10         0000                02  22334566


Q ss_pred             EEeCCc--eEEcC-----CCEEeccEEEEccccccccccccccC
Q psy810          170 RLLQDS--VVFQD-----DTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~~~--v~~~~-----g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .++...  +.+.+     +..+.+|.+|+||| .+|+.  +-++
T Consensus        82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATG-s~p~~--p~i~  122 (437)
T 4eqs_A           82 AINDERQTVSVLNRKTNEQFEESYDKLILSPG-ASANS--LGFE  122 (437)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECSEEEECCC-EEECC--CCCC
T ss_pred             EEEccCcEEEEEeccCCceEEEEcCEEEECCC-Ccccc--cccc
Confidence            665432  33322     23578999999999 99887  6444

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.72  E-value=5.9e-05  Score=63.34  Aligned_cols=32  Identities=19%  Similarity=0.484  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      .+|+|||+|.+|+.+|..|++.+. +|+|+++.
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~   37 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKG   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecC
Confidence            469999999999999999999998 99999885

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.71  E-value=8.4e-05  Score=64.66  Aligned_cols=84  Identities=14%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc----------ccccC----CC-------------ce--EEcCCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA----------FKHQI----GD-------------SV--VQKPDI  168 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~----------~~~~~----~~-------------~i--~~~~~i  168 (227)
                      +|+|||+|..|+.+|..|++.  +.+|+|+++.+..          +....    +.             ++  .....+
T Consensus         2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   81 (452)
T 2cdu_A            2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV   81 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence            699999999999999999998  8999999985421          00000    11             12  223345


Q ss_pred             cEEe--CCceEEcC-----CCEEeccEEEEccccccccccccccC
Q psy810          169 KRLL--QDSVVFQD-----DTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       169 ~~~~--~~~v~~~~-----g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..++  .+.+.+.+     +.++.+|.+|+||| .+|..  +-++
T Consensus        82 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG-s~p~~--p~i~  123 (452)
T 2cdu_A           82 TNVDPETKTIKVKDLITNEEKTEAYDKLIMTTG-SKPTV--PPIP  123 (452)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEECSEEEECCC-EEECC--CCCT
T ss_pred             EEEEcCCCEEEEEecCCCceEEEECCEEEEccC-CCcCC--CCCC
Confidence            5554  23466543     45689999999999 88877  5443

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.71  E-value=0.00015  Score=62.91  Aligned_cols=85  Identities=13%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-c---------cccCC--C-------------ceE--EcCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-F---------KHQIG--D-------------SVV--QKPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~---------~~~~~--~-------------~i~--~~~~i~  169 (227)
                      ++|+|||+|..|+.+|..|++.  +.+|+|+++.+.. +         .....  .             ++.  ....+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~   80 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT   80 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            3699999999999999999998  8899999985421 0         00000  0             122  233444


Q ss_pred             EEeC--CceEEcC---CCE--EeccEEEEccccccccccccccC
Q psy810          170 RLLQ--DSVVFQD---DTS--HPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~--~~v~~~~---g~~--i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .+..  +.+.+.+   |+.  +.+|.+|+||| ..|..  +-++
T Consensus        81 ~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG-~~p~~--p~i~  121 (447)
T 1nhp_A           81 AIQPKEHQVTVKDLVSGEERVENYDKLIISPG-AVPFE--LDIP  121 (447)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECSEEEECCC-EEECC--CCST
T ss_pred             EEeCCCCEEEEEecCCCceEEEeCCEEEEcCC-CCcCC--CCCC
Confidence            4532  3466643   653  89999999999 88877  5443

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.69  E-value=0.00013  Score=64.92  Aligned_cols=34  Identities=9%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|..|+.+|..|++.+.+|+|+++..
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3579999999999999999999999999999854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.67  E-value=0.00018  Score=58.81  Aligned_cols=85  Identities=12%  Similarity=0.190  Sum_probs=55.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEE-EeecCc--ccc--c------cCC------------------CceEE-cCCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFL-SHHISV--AFK--H------QIG------------------DSVVQ-KPDI  168 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtl-i~~~~~--~~~--~------~~~------------------~~i~~-~~~i  168 (227)
                      .+|+|||+|++|+.+|..|++.+.+|++ +++...  .+.  .      .++                  .++.. ...+
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v   84 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGV   84 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECCCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEEEE
Confidence            5799999999999999999999999999 886210  000  0      011                  02222 1244


Q ss_pred             cEE-eC--CceE--EcCCCEEeccEEEEccccccccccccccC
Q psy810          169 KRL-LQ--DSVV--FQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       169 ~~~-~~--~~v~--~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      ..+ ++  +.+.  +.++.++.+|.+|+||| ..|+.  +-++
T Consensus        85 ~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG-~~~~~--~~~~  124 (315)
T 3r9u_A           85 EQILKNSDGSFTIKLEGGKTELAKAVIVCTG-SAPKK--AGFK  124 (315)
T ss_dssp             EEEEECTTSCEEEEETTSCEEEEEEEEECCC-EEECC--CCCB
T ss_pred             EEEecCCCCcEEEEEecCCEEEeCEEEEeeC-CCCCC--CCCC
Confidence            455 33  3344  44333889999999999 88876  5443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.66  E-value=0.00017  Score=61.11  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|.+|+=+|..|++.|.+|+|+++.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~   33 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERN   33 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecC
Confidence            7999999999999999999999999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.64  E-value=0.00014  Score=63.65  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|..|+.+|..|++.|.+|+|+++++
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~   37 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG   37 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            69999999999999999999999999999543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.64  E-value=9.7e-05  Score=61.16  Aligned_cols=80  Identities=13%  Similarity=0.143  Sum_probs=54.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee----cCc---ccc--------ccCCC------------------ceEE-
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH----ISV---AFK--------HQIGD------------------SVVQ-  164 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~----~~~---~~~--------~~~~~------------------~i~~-  164 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+++++    ...   .+.        ..++.                  .+.+ 
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            4799999999999999999999999999987    111   000        00110                  1222 


Q ss_pred             cCCccEEeCC----ceEEcCCCEEeccEEEEccccccccc
Q psy810          165 KPDIKRLLQD----SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       165 ~~~i~~~~~~----~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ...+..++.+    .+.+ +|..+.+|.+|+|+| ..+..
T Consensus        89 ~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G-~~~~~  126 (333)
T 1vdc_A           89 TETVTKVDFSSKPFKLFT-DSKAILADAVILAIG-AVAKR  126 (333)
T ss_dssp             CCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCC-EEECC
T ss_pred             EeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCC-CCcCC
Confidence            1125666532    2444 677899999999999 88766

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.61  E-value=0.0001  Score=66.00  Aligned_cols=33  Identities=18%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~  139 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERG  139 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEcc
Confidence            467999999999999999999999999999985

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.61  E-value=0.00022  Score=60.37  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+.+|..|++.|.+|+|+++..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4589999999999999999999999999999853

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.60  E-value=0.00023  Score=63.20  Aligned_cols=82  Identities=21%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC-ccccc-----cC--------------------CCceE--EcCCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS-VAFKH-----QI--------------------GDSVV--QKPDIK  169 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~-~~~~~-----~~--------------------~~~i~--~~~~i~  169 (227)
                      ...|+|||||++|+.+|..+++.|.+|+++.++. ..+..     .+                    ..++.  ....+.
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~  291 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS  291 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence            3479999999999999999999999999997531 01100     00                    01222  244677


Q ss_pred             EEeCC-------ceEEcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQD-------SVVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~~-------~v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .+..+       .|.+.+|..+.+|.+|+||| ..+..
T Consensus       292 ~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG-~~~~~  328 (521)
T 1hyu_A          292 KLVPAATEGGLHQIETASGAVLKARSIIIATG-AKWRN  328 (521)
T ss_dssp             EEECCSSTTSCEEEEETTSCEEEEEEEEECCC-EEECC
T ss_pred             EEEeccCCCceEEEEECCCCEEEcCEEEECCC-CCcCC
Confidence            77421       26778888999999999999 87765

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.60  E-value=4.9e-05  Score=67.22  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+|+|||||.+|+.+|..|++.|.+|+|+++.+
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            35689999999999999999999999999999853

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.56  E-value=0.00022  Score=62.13  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||||..|+.+|..+++.+.+|+|+++.
T Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            5 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            46999999999999999999999999999984

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.52  E-value=0.00027  Score=62.01  Aligned_cols=81  Identities=16%  Similarity=0.265  Sum_probs=55.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc------cc----ccCC----------------CceEE--cCCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA------FK----HQIG----------------DSVVQ--KPDI  168 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~------~~----~~~~----------------~~i~~--~~~i  168 (227)
                      .+|+|||+|..|+.+|..|++.  +.+|+|+++.+..      +.    ....                .++.+  ...+
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v  116 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV  116 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence            5799999999999999999986  8899999885421      00    0000                02222  2344


Q ss_pred             cEEeC--CceEEc---CCC--EEeccEEEEccccccccc
Q psy810          169 KRLLQ--DSVVFQ---DDT--SHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       169 ~~~~~--~~v~~~---~g~--~i~~D~vi~atG~~~~~~  200 (227)
                      ..++.  +.+.+.   +|+  ++.+|.+|+||| ..|..
T Consensus       117 ~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG-~~p~~  154 (480)
T 3cgb_A          117 TKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATG-VRPVM  154 (480)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEECSEEEECCC-EEECC
T ss_pred             EEEECCCCEEEEEEcCCCceEEEEcCEEEECCC-CcccC
Confidence            45542  345554   376  689999999999 88876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.52  E-value=0.00028  Score=57.95  Aligned_cols=81  Identities=17%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc--------ccCCC------------------ceEE-cCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK--------HQIGD------------------SVVQ-KPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~--------~~~~~------------------~i~~-~~~i~  169 (227)
                      .+|+|||+|.+|+.+|..|.+.+.+|+++++...  .+.        ..++.                  ++.+ ...+.
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   85 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHIN   85 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCCEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEeeee
Confidence            4799999999999999999999999999986310  000        00110                  1222 11255


Q ss_pred             EEeC--CceE-EcCCCEEeccEEEEccccccccc
Q psy810          170 RLLQ--DSVV-FQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       170 ~~~~--~~v~-~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      .++.  +.+. +.+|..+.+|.+|+|+| ..|..
T Consensus        86 ~i~~~~~~~~v~~~~~~~~~~~lv~AtG-~~~~~  118 (320)
T 1trb_A           86 KVDLQNRPFRLNGDNGEYTCDALIIATG-ASARY  118 (320)
T ss_dssp             EEECSSSSEEEEESSCEEEEEEEEECCC-EEECC
T ss_pred             EEEecCCEEEEEeCCCEEEcCEEEECCC-CCcCC
Confidence            5543  2233 56788899999999999 88776

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.52  E-value=0.00041  Score=59.13  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            3579999999999999999999999999998854

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.51  E-value=0.00036  Score=60.93  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+|+|||+|..|+.+|..|++.+.+|+|+++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.50  E-value=0.0002  Score=62.63  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|..|+.+|..+++.+.+|+|+++.
T Consensus         7 ~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~   38 (464)
T 2eq6_A            7 YDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG   38 (464)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999985

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.49  E-value=0.00033  Score=58.13  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=56.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc--------ccCC------------------CceEEc-CCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK--------HQIG------------------DSVVQK-PDI  168 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~--------~~~~------------------~~i~~~-~~i  168 (227)
                      ..+|+|||+|.+|+.+|..|.+.+.+|+++++...  .+.        ..++                  .++.+. ..+
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~v   93 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDV   93 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEeeE
Confidence            35799999999999999999999999999986310  000        0011                  012221 124


Q ss_pred             cEEeC-C--ce-EEcCCCEEeccEEEEccccccccc
Q psy810          169 KRLLQ-D--SV-VFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       169 ~~~~~-~--~v-~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ..++. +  .+ .+.+|.++.+|.+|+|+| ..|..
T Consensus        94 ~~i~~~~~~~v~~~~~g~~~~~d~lviAtG-~~~~~  128 (335)
T 2a87_A           94 ESVSLHGPLKSVVTADGQTHRARAVILAMG-AAARY  128 (335)
T ss_dssp             EEEECSSSSEEEEETTSCEEEEEEEEECCC-EEECC
T ss_pred             EEEEeCCcEEEEEeCCCCEEEeCEEEECCC-CCccC
Confidence            45543 2  25 667888999999999999 88776

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.47  E-value=0.00042  Score=61.77  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=56.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc--------c--------------c------------ccCC-----
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA--------F--------------K------------HQIG-----  159 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~--------~--------------~------------~~~~-----  159 (227)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+..        .              .            ..++     
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            46999999999999999999999999999885321        0              0            0000     


Q ss_pred             --------------CceEEcCCccEEe--CC----ceEEcCCCEEeccEEEEcccccc
Q psy810          160 --------------DSVVQKPDIKRLL--QD----SVVFQDDTSHPFDSIIYCTGAYK  197 (227)
Q Consensus       160 --------------~~i~~~~~i~~~~--~~----~v~~~~g~~i~~D~vi~atG~~~  197 (227)
                                    ..+..++.|.++.  ++    .|++.+|.++.+|.||+|+| ..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG-~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG-QL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC-SC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcC-CC
Confidence                          1344455666663  22    37778888999999999999 63

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.46  E-value=0.00034  Score=61.13  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|..|+.+|..+++.+.+|+|+++.
T Consensus         5 ~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            5 FDLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            46999999999999999999999999999984

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.44  E-value=0.0004  Score=58.99  Aligned_cols=84  Identities=7%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCcc------ccccCC-------------------CceEE--cCCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVA------FKHQIG-------------------DSVVQ--KPDIK  169 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~------~~~~~~-------------------~~i~~--~~~i~  169 (227)
                      .+|+|||+|.+|+.+|..|++.+  .+|+++++....      +...++                   .++..  ...+.
T Consensus         5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~   84 (384)
T 2v3a_A            5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVT   84 (384)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCCCC
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCEEE
Confidence            56999999999999999999987  468999774211      111111                   12222  33455


Q ss_pred             EEeC--CceEEcCCCEEeccEEEEccccccccccccccC
Q psy810          170 RLLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLA  206 (227)
Q Consensus       170 ~~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~  206 (227)
                      .++.  ..+.+. +..+.+|.+|+||| ..|..  +-++
T Consensus        85 ~i~~~~~~v~~~-~~~~~~d~lviAtG-~~p~~--p~i~  119 (384)
T 2v3a_A           85 GIDPGHQRIWIG-EEEVRYRDLVLAWG-AEPIR--VPVE  119 (384)
T ss_dssp             EEEGGGTEEEET-TEEEECSEEEECCC-EEECC--CCCB
T ss_pred             EEECCCCEEEEC-CcEEECCEEEEeCC-CCcCC--CCCC
Confidence            5543  346654 45799999999999 88876  5443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.42  E-value=0.00026  Score=61.84  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|..|+.+|..|++.+.+|+|+++.+
T Consensus         3 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   35 (468)
T 2qae_A            3 YDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG   35 (468)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            369999999999999999999999999999853

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.38  E-value=0.00064  Score=58.03  Aligned_cols=34  Identities=12%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .-+|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4579999999999999999999999999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.38  E-value=0.00053  Score=60.19  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      -.|+|||+|..|+-+|..|++.|.+|+|+++
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk   57 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEE   57 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeC
Confidence            3799999999999999999999999999998

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.37  E-value=0.0011  Score=56.56  Aligned_cols=34  Identities=26%  Similarity=0.428  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4589999999999999999999999999999853

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.36  E-value=0.0004  Score=60.44  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|..|+.+|..+++.+.+|+|+++.
T Consensus         4 ~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            35999999999999999999999999999984

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.36  E-value=0.0006  Score=59.60  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHh---ccCe---EEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK---VAKN---VFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~---~~~~---Vtli~~~~  151 (227)
                      ++|+|||+|.+|+.+|..|++   .|.+   |+++++++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~   41 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQA   41 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Confidence            579999999999999999999   8888   99999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.35  E-value=0.00035  Score=60.78  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|+.|+.+|..+++.+.+|+|+++.
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   33 (455)
T 2yqu_A            3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKE   33 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCChhHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999999999999985

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.33  E-value=0.00076  Score=55.44  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc--ccc-----ccCC--------------------CceEE-cCCccE
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV--AFK-----HQIG--------------------DSVVQ-KPDIKR  170 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~--~~~-----~~~~--------------------~~i~~-~~~i~~  170 (227)
                      .+|+|||+|.+|+.+|..|++.+.+|+|+++...  .+.     ..++                    ..+.. ...+..
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~   96 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVEVRS   96 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEeeEEE
Confidence            4799999999999999999999999999987321  000     0011                    02221 124444


Q ss_pred             Ee--CCc--eEEcCCCEEeccEEEEccccccccc
Q psy810          171 LL--QDS--VVFQDDTSHPFDSIIYCTGAYKYSY  200 (227)
Q Consensus       171 ~~--~~~--v~~~~g~~i~~D~vi~atG~~~~~~  200 (227)
                      ++  .+.  +.+ ++.++.+|.+|+|+| ..|..
T Consensus        97 i~~~~~~~~v~~-~~~~~~~~~li~AtG-~~~~~  128 (319)
T 3cty_A           97 IKKTQGGFDIET-NDDTYHAKYVIITTG-TTHKH  128 (319)
T ss_dssp             EEEETTEEEEEE-SSSEEEEEEEEECCC-EEECC
T ss_pred             EEEeCCEEEEEE-CCCEEEeCEEEECCC-CCccc
Confidence            43  232  444 667899999999999 87766

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.32  E-value=0.00053  Score=59.97  Aligned_cols=33  Identities=18%  Similarity=0.308  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|..|+.+|..+++.+.+|+|+++.+
T Consensus         7 ~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   39 (474)
T 1zmd_A            7 ADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE   39 (474)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            469999999999999999999999999999853

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.32  E-value=0.00057  Score=59.60  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|..|+.+|..|++.+.+|+|+++.+
T Consensus         7 ~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~   39 (470)
T 1dxl_A            7 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   39 (470)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999853

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.00033  Score=60.51  Aligned_cols=33  Identities=27%  Similarity=0.545  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..+++.|.+|+|+++.+
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~   60 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHAR   60 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999998854

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.31  E-value=0.00043  Score=56.46  Aligned_cols=33  Identities=27%  Similarity=0.433  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+.+|..|++. +.+|+|+++..
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3699999999999999999997 99999999854

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.29  E-value=0.00047  Score=60.09  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=29.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .+|+|||+|+.|+.+|..+++.+.+|+|+++
T Consensus         6 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~   36 (458)
T 1lvl_A            6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG   36 (458)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEcc
Confidence            4699999999999999999999999999988

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.26  E-value=6e-05  Score=69.27  Aligned_cols=80  Identities=23%  Similarity=0.332  Sum_probs=51.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc------cCCCceEE------------c-CCccEEeCCceEE
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH------QIGDSVVQ------------K-PDIKRLLQDSVVF  178 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~------~~~~~i~~------------~-~~i~~~~~~~v~~  178 (227)
                      .++|+|||||.+|+.+|..|++.|.+|+|+++.+. +..      .++.....            . ..|.-..+..+..
T Consensus       391 ~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~-~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  469 (690)
T 3k30_A          391 DARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD-LGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMTG  469 (690)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS-SCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCCH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-CCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeecH
Confidence            46899999999999999999999999999998532 210      12211000            0 1222112222333


Q ss_pred             cCCCEEeccEEEEcccccccc
Q psy810          179 QDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       179 ~~g~~i~~D~vi~atG~~~~~  199 (227)
                      .++..+.+|.+|+||| ..+.
T Consensus       470 ~~~~~~~~d~lvlAtG-~~~~  489 (690)
T 3k30_A          470 DDIVEFGFEHVITATG-ATWR  489 (690)
T ss_dssp             HHHHHTTCCEEEECCC-EEEC
T ss_pred             HHHhhcCCCEEEEcCC-Cccc
Confidence            4445578999999999 8854

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.00052  Score=59.85  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|..|+-+|..|++.|.+|+|+++
T Consensus         7 DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            7 DLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            699999999999999999999999999998

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.23  E-value=0.00015  Score=63.34  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|++|+.+|..|++.|.+|+|+++.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46789999999999999999999999999999853

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.23  E-value=0.00048  Score=60.67  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhc---cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~  150 (227)
                      +|+|||+|..|+.+|..|++.   |.+|+|+++.
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~   37 (499)
T 1xdi_A            4 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   37 (499)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCC
Confidence            699999999999999999999   9999999985

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.22  E-value=0.00039  Score=61.31  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|+.|+.+|..+++.+.+|+|+++.
T Consensus         4 dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   34 (500)
T 1onf_A            4 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   34 (500)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5999999999999999999999999999985

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.22  E-value=0.001  Score=56.59  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~   38 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQA   38 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            36999999999999999999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0011  Score=58.13  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||||..|+.+|..+++.+.+|+|+++.
T Consensus        12 ~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~   43 (479)
T 2hqm_A           12 YDYLVIGGGSGGVASARRAASYGAKTLLVEAK   43 (479)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSCCEEEEESS
T ss_pred             CCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            47999999999999999999999999999984

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.20  E-value=0.00026  Score=61.91  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHh-c------cCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK-V------AKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~-~------~~~Vtli~~~~  151 (227)
                      .++|+|||+|++|+.+|..|.+ .      +.+|+|+.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~   43 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   43 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCC
Confidence            4689999999999999999998 7      88999999854

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.20  E-value=0.00058  Score=56.89  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHh---ccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~  150 (227)
                      +|+|||+|.+|+-+|..|.+   .|.+|+++++.
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~   36 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA   36 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECC
Confidence            69999999999999999999   88899999874

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.20  E-value=0.00075  Score=57.64  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~   37 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQ   37 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            36999999999999999999999999999985

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.18  E-value=0.00016  Score=62.13  Aligned_cols=48  Identities=10%  Similarity=0.014  Sum_probs=36.4

Q ss_pred             cceeEEeCceEEEEEEeeC-CCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSV-PTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~-~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .+++++++++|.++...++ ..+.+.+.++++ .+.+|+||+|||.++.|
T Consensus       122 ~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p  170 (401)
T 2gqf_A          122 YGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMP  170 (401)
T ss_dssp             HTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCG
T ss_pred             CCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccCC
Confidence            3678999999999875310 024588888877 79999999999995543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.17  E-value=8.3e-05  Score=68.79  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=52.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---c--cccCCC-------------ceEE----cCCccEEeC-C
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---F--KHQIGD-------------SVVQ----KPDIKRLLQ-D  174 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~--~~~~~~-------------~i~~----~~~i~~~~~-~  174 (227)
                      .++|+|||||.+|+.+|..|++.|.+|+|+++.+..   +  ...+|.             .+..    ......+.. .
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~  468 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQK  468 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEeCe
Confidence            468999999999999999999999999999985421   1  011121             0000    001122222 2


Q ss_pred             ceEEcCCCEEeccEEEEcccccccc
Q psy810          175 SVVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       175 ~v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                      .+.++++..+.+|.||+||| ..++
T Consensus       469 ~v~~~~~~~~~~d~vviAtG-~~~~  492 (729)
T 1o94_A          469 PMTADDVLQYGADKVIIATG-ARWN  492 (729)
T ss_dssp             CCCHHHHHTSCCSEEEECCC-EEEC
T ss_pred             EEehhhccccCCCEEEEcCC-CCcc
Confidence            24444555678999999999 8753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.14  E-value=0.0011  Score=58.42  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|+.+|..+++.|.+|+|+++.
T Consensus        10 DvvVIGgG~aGl~aA~~la~~G~~V~liE~~   40 (492)
T 3ic9_A           10 DVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG   40 (492)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCSCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            6999999999999999999999999999984

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.13  E-value=0.0013  Score=56.52  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+.+|..+++.|.+|+|+++.+
T Consensus         6 dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~   37 (401)
T 2gqf_A            6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (401)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            59999999999999999999999999999854

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.12  E-value=0.001  Score=60.77  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=31.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||||+.|+.+|..|++.+.+|+|+++.+
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~  406 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS  406 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3689999999999999999999999999999853

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.12  E-value=0.0014  Score=57.58  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             CeEEEEccCccHHHHHHHHHh-ccCeEEEEe
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK-VAKNVFLSH  148 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~-~~~~Vtli~  148 (227)
                      ..|+|||||..|+.+|..+++ .|.+|+|++
T Consensus         4 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             ccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            369999999999999999999 899999999

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.11  E-value=0.00091  Score=58.94  Aligned_cols=30  Identities=17%  Similarity=0.405  Sum_probs=28.6

Q ss_pred             CeEEEEccCccHHHHHHHHHh-ccCeEEEEe
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK-VAKNVFLSH  148 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~-~~~~Vtli~  148 (227)
                      .+|+|||+|..|+.+|..+++ .|.+|+|++
T Consensus         8 ~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            469999999999999999999 899999999

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.11  E-value=0.00042  Score=60.58  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~  151 (227)
                      .++|+|||+|++|+.+|..|.+.+  .+|+|+.+.+
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~   41 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   41 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence            468999999999999999999988  8999999854

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.07  E-value=0.00073  Score=58.90  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus         5 dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            6999999999999999999999999999985

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.06  E-value=0.00083  Score=59.00  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|..|+.+|..|++.|.+|+|++++
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~   57 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR   57 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999999999999999999999999974

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.04  E-value=0.00013  Score=69.89  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      +++|+|||+|+.|+.+|..|++.|. +|+|+++.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~  220 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ  220 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            5789999999999999999999998 79999984

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.03  E-value=0.00087  Score=60.94  Aligned_cols=83  Identities=10%  Similarity=0.051  Sum_probs=54.5

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++ ++++|..+...+  ...+.|.+.+|..+.+|.||+|||.  .+..+.++|...+.                +.+ 
T Consensus       139 GV~I-~~~~V~~L~~e~--g~V~GV~t~dG~~I~Ad~VVLATGt--~s~~~~i~G~~~~~----------------~gr-  196 (651)
T 3ces_A          139 NLMI-FQQAVEDLIVEN--DRVVGAVTQMGLKFRAKAVVLTVGT--FLDGKIHIGLDNYS----------------GGR-  196 (651)
T ss_dssp             TEEE-EECCEEEEEESS--SBEEEEEETTSEEEEEEEEEECCST--TTCCEEECC-------------------------
T ss_pred             CCEE-EEEEEEEEEecC--CEEEEEEECCCCEEECCEEEEcCCC--CccCccccCcccCC----------------CCC-
Confidence            5677 567888886422  1345677777788999999999999  45655677754311                122 


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                        +| |.+|.++|..|.+.|.+|+.+..
T Consensus       197 --iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          197 --AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             --------CCHHHHHHHTTTCCEEEECC
T ss_pred             --cc-chhhhHHHHHHHhcCCeEEEecC
Confidence              56 78999999999999999998854

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.02  E-value=0.001  Score=58.16  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|..|+.+|..|++.|.+|+|+++.
T Consensus        21 ~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           21 YDYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            46999999999999999999999999999974

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.99  E-value=0.0017  Score=56.77  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|..|+-+|..+++.|.+|+|+++..
T Consensus         5 DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            59999999999999999999999999999853

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.98  E-value=0.0016  Score=57.09  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      -.|+|||+|..|+-+|..+++.|.+|+|+++
T Consensus        10 ~DvvVIGgG~aGl~aA~~la~~G~~V~liEk   40 (483)
T 3dgh_A           10 YDLIVIGGGSAGLACAKEAVLNGARVACLDF   40 (483)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCEEEEEEe
Confidence            3699999999999999999999999999973

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.93  E-value=0.0012  Score=57.77  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|..|+.+|..+++.+.+|+|+++.
T Consensus         7 ~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~   38 (482)
T 1ojt_A            7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERY   38 (482)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36999999999999999999999999999984

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=96.92  E-value=0.0019  Score=58.78  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||||.+|+++|..+++.|.+|+|+++.
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   60 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN   60 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence            36999999999999999999999999999874

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.89  E-value=0.0018  Score=56.63  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus         6 ~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~   37 (478)
T 1v59_A            6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (478)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            36999999999999999999999999999984

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.001  Score=58.60  Aligned_cols=32  Identities=25%  Similarity=0.499  Sum_probs=29.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+.+|..|++. .+|+|+++.+
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~  140 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERG  140 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCC
Confidence            3699999999999999999999 9999998853

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.89  E-value=0.0037  Score=55.35  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=29.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      -.|+|||+|+.|+.+|..+++.|.+|+|+++
T Consensus        33 ~DVvVIGgGpaGl~aA~~la~~G~~V~liEk   63 (519)
T 3qfa_A           33 YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF   63 (519)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            4699999999999999999999999999997

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=96.84  E-value=0.005  Score=55.54  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~   55 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS   55 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCC
Confidence            468999999999999999999999999999985

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.71  E-value=0.0041  Score=56.36  Aligned_cols=31  Identities=16%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+++|..+++.|.+|.|+++.
T Consensus        29 DVIVIGgG~AGl~AAlalAr~G~kVlLIEk~   59 (637)
T 2zxi_A           29 DVVVIGGGHAGIEAALAAARMGAKTAMFVLN   59 (637)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence            6999999999999999999999999999885

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.69  E-value=0.0012  Score=51.42  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|+-+|..|++.|.+|+|+++.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999853

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.66  E-value=0.0039  Score=54.68  Aligned_cols=30  Identities=23%  Similarity=0.463  Sum_probs=28.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .|+|||+|..|+.+|..+++.|.+|+|+++
T Consensus         8 DvvVIG~G~aGl~aA~~la~~G~~V~liEk   37 (488)
T 3dgz_A            8 DLLVIGGGSGGLACAKEAAQLGKKVAVADY   37 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEEe
Confidence            599999999999999999999999999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.65  E-value=0.0054  Score=55.17  Aligned_cols=32  Identities=16%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ..+|+|||+|+.|+.+|..+++.|.+|+++++
T Consensus       107 ~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A          107 DYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             cccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            35799999999999999999999999999986

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.51  E-value=0.0049  Score=58.76  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|+.|+.+|..+.+.+.+|+|+.+.
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~  160 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDER  160 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            46999999999999999999999999999884

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=96.19  E-value=0.0085  Score=53.75  Aligned_cols=32  Identities=22%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~   81 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKL   81 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCC
Confidence            36999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.18  E-value=0.007  Score=44.47  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      .....+++|+|+|+|.+|..+|..|.+.|.+|+++.+.....
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~   55 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAF   55 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            344457899999999999999999999999999998854443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=96.17  E-value=0.0027  Score=55.50  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|+|||+|.+|+-+|..|++.|.+|+|++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~   33 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQR   33 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccC
Confidence            68999999999999999999999999999875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.15  E-value=0.0039  Score=51.67  Aligned_cols=38  Identities=18%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+...+|+|+|+|.+|.-+|..|.+.|.+|+++ +++.
T Consensus        15 ~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~   52 (318)
T 3hwr_A           15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ   52 (318)
T ss_dssp             -----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH
T ss_pred             hhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh
Confidence            3445689999999999999999999999999999 6443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=96.14  E-value=0.0051  Score=55.76  Aligned_cols=83  Identities=8%  Similarity=-0.006  Sum_probs=59.0

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      ++++ ++++|..+...+  ...+.|.+.++..+.++.||+|||.  .+..+.++|...+.               .++  
T Consensus       138 GVeI-~~~~Vt~L~~e~--g~V~GV~t~dG~~i~AdaVVLATG~--~s~~~~~~G~~~~~---------------~Gr--  195 (637)
T 2zxi_A          138 NLYI-KQEEVVDIIVKN--NQVVGVRTNLGVEYKTKAVVVTTGT--FLNGVIYIGDKMIP---------------GGR--  195 (637)
T ss_dssp             TEEE-EESCEEEEEESS--SBEEEEEETTSCEEECSEEEECCTT--CBTCEEEETTEEEE---------------CSB--
T ss_pred             CCEE-EEeEEEEEEecC--CEEEEEEECCCcEEEeCEEEEccCC--CccCceeccceecC---------------CCC--
Confidence            5677 567888876422  1334577777788999999999999  55666677754321               122  


Q ss_pred             EEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          122 LLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       122 ~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                        +| +.++.+++..|.+.|.+++.+.+
T Consensus       196 --~G-~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          196 --LG-EPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             --TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             --CC-chhHHHHHHHHHhcCCceEEecC
Confidence              23 67889999999999998887755

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.05  E-value=0.0062  Score=48.00  Aligned_cols=36  Identities=14%  Similarity=0.168  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.+++|+|||||.+|...+..|.+.|.+|+++.+.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            456899999999999999999999999999999873

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.79  E-value=0.013  Score=48.02  Aligned_cols=36  Identities=17%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..+++++|||+|. .|.-+|..|.+.+..||+.++.
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            56799999999996 6999999999999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.79  E-value=0.01  Score=48.18  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.+++|+|||||.+|...+..|.+.|.+|+++...
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            346899999999999999999999999999999873

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.77  E-value=0.026  Score=50.27  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      -|+|||+|..|.-.|..+++.|.+|.|+++
T Consensus        44 DviVIG~GpaG~~aA~~aa~~G~kValIE~   73 (542)
T 4b1b_A           44 DYVVIGGGPGGMASAKEAAAHGARVLLFDY   73 (542)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            399999999999999999999999999985

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.75  E-value=0.013  Score=47.64  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEccCcc-HHHHHHHHHhc--cCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPS-GVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~-g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      .++.+++++|||.|.+ |.-+|..|.+.  +..||+.+++.
T Consensus       154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t  194 (281)
T 2c2x_A          154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT  194 (281)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            3567999999999975 99999999999  89999998754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.74  E-value=0.0073  Score=50.53  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=29.2

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~   37 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRP   37 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999853

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.66  E-value=0.013  Score=47.88  Aligned_cols=38  Identities=13%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++++|||+|. .|.-+|..|.+.+..||+.+++.
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t  193 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT  193 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            356799999999997 59999999999999999998743

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.59  E-value=0.0083  Score=52.20  Aligned_cols=78  Identities=21%  Similarity=0.318  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---EE--e-ccE
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---SH--P-FDS  188 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~i--~-~D~  188 (227)
                      ++.+++|+|+|.|.+|+-+|..|.+.|.+|+++.++....    +      +....+...++.+..|.   .+  . +|.
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~------~~~~~L~~~gi~~~~g~~~~~~~~~~~d~   75 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----N------PTAQSLLEEGIKVVCGSHPLELLDEDFCY   75 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----C------HHHHHHHHTTCEEEESCCCGGGGGSCEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----C------hHHHHHHhCCCEEEECCChHHhhcCCCCE
Confidence            4568999999999999999999999999999998743210    0      00111111222222221   11  3 899


Q ss_pred             EEEcccccccccccccc
Q psy810          189 IIYCTGAYKYSYKLTFL  205 (227)
Q Consensus       189 vi~atG~~~~~~~~~~l  205 (227)
                      ||++.| ..++.  +.+
T Consensus        76 vv~spg-i~~~~--p~~   89 (451)
T 3lk7_A           76 MIKNPG-IPYNN--PMV   89 (451)
T ss_dssp             EEECTT-SCTTS--HHH
T ss_pred             EEECCc-CCCCC--hhH
Confidence            999999 98877  655

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=95.56  E-value=0.0089  Score=51.51  Aligned_cols=33  Identities=15%  Similarity=0.315  Sum_probs=30.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||||.+|+-+|..|++.|.+|+|++++.
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            689999999999999999999999999999854

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.53  E-value=0.02  Score=46.69  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..|++++|+|.|. .|.-+|..|.+.+..||+.+++.
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t  194 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT  194 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            356799999999876 79999999999999999998843

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.53  E-value=0.019  Score=46.70  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..|++++|||.|. .|.-+|..|.+.+..||+.+++
T Consensus       157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  194 (285)
T 3l07_A          157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF  194 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            356799999999776 7999999999999999999874

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=95.46  E-value=0.012  Score=51.46  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+.+|..|.+.|.+|+++++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~   66 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   66 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5689999999999999999999999999999854

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=95.40  E-value=0.014  Score=49.92  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~   32 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKS   32 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            36999999999999999999999999999985

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.29  E-value=0.014  Score=49.64  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            69999999999999999999999999999853

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=95.28  E-value=0.015  Score=49.12  Aligned_cols=33  Identities=18%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      ++|+|||||.+|+-+|..|++.  |.+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~   35 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKND   35 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence            3699999999999999999999  99999999853

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=95.21  E-value=0.015  Score=48.19  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~   36 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAA   36 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36999999999999999999999999999985

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.17  E-value=0.014  Score=48.96  Aligned_cols=32  Identities=28%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~   49 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESG   49 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            47999999999999999999999999999885

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=95.09  E-value=0.017  Score=49.53  Aligned_cols=33  Identities=24%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.|+|||||..|+++|..+++.|.+|+|++++.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999998754

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=95.09  E-value=0.014  Score=48.76  Aligned_cols=31  Identities=16%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~   34 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAH   34 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            6999999999999999999999999999875

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.08  E-value=0.025  Score=46.07  Aligned_cols=37  Identities=16%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..|++++|+|.|. .|.-+|..|.+.+..||+.+++
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~  194 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF  194 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence            356799999999766 8999999999999999999874

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=95.08  E-value=0.017  Score=48.46  Aligned_cols=31  Identities=23%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         5 dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~   35 (389)
T 2gf3_A            5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (389)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            6999999999999999999999999999874

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=95.07  E-value=0.017  Score=49.97  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~  151 (227)
                      ++|+|||||.+|+-+|..|++.|.  +|+|+++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            579999999999999999999998  999999843

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=95.03  E-value=0.019  Score=48.49  Aligned_cols=31  Identities=26%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~   36 (397)
T 2oln_A            6 DVVVVGGGPVGLATAWQVAERGHRVLVLERH   36 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6999999999999999999999999999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=95.02  E-value=0.016  Score=48.89  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            59999999999999999999999999999854

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.00  E-value=0.025  Score=45.80  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|++++|||.|. .|.-+|..|.+.+..||+.+++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence            6799999999875 8999999999999999999874

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=94.95  E-value=0.021  Score=48.61  Aligned_cols=34  Identities=21%  Similarity=0.506  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.| .+|+++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~   40 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTD   40 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            467999999999999999999999 8999999843

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.88  E-value=0.018  Score=48.31  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~   37 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR   37 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46999999999999999999999999999885

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.88  E-value=0.03  Score=45.94  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..|++++|||.|. .|.-+|..|.+.+..||+.+++.
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T  199 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT  199 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC
Confidence            356799999999776 79999999999999999999843

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=94.84  E-value=0.02  Score=48.86  Aligned_cols=31  Identities=32%  Similarity=0.432  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~   33 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGG   33 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence            5999999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.83  E-value=0.018  Score=49.82  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC----EE-eccEEE
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT----SH-PFDSII  190 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~----~i-~~D~vi  190 (227)
                      +.+++|+|||.|.+|+..|..|.+.|.+|+.+..+...     +..       ..+. .++.+..|.    .+ .+|.||
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~-----~~~-------~~l~-~G~~~~~g~~~~~~~~~~d~vV   69 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP-----PGL-------DKLP-EAVERHTGSLNDEWLMAADLIV   69 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC-----TTG-------GGSC-TTSCEEESSCCHHHHHTCSEEE
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc-----chh-------HHhh-CCCEEEECCCcHHHhccCCEEE
Confidence            46789999999999999999999999999999874321     100       1111 122222111    12 489999


Q ss_pred             EccccccccccccccC
Q psy810          191 YCTGAYKYSYKLTFLA  206 (227)
Q Consensus       191 ~atG~~~~~~~~~~l~  206 (227)
                      ++.| ..++.  +.+.
T Consensus        70 ~s~g-i~~~~--p~~~   82 (439)
T 2x5o_A           70 ASPG-IALAH--PSLS   82 (439)
T ss_dssp             ECTT-SCTTC--HHHH
T ss_pred             eCCC-CCCCC--HHHH
Confidence            9999 88776  6554

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=94.82  E-value=0.023  Score=48.40  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCe-EEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..|++.|.+ |+|+++.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4799999999999999999999999 99999853

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=94.81  E-value=0.043  Score=47.16  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=37.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .+++++++++|.++...+   +.+.+.+.++ .+.+|+||+|||.++.|
T Consensus       145 ~Gv~i~~~~~V~~i~~~~---~~~~V~~~~g-~i~ad~VIlAtG~~S~p  189 (417)
T 3v76_A          145 AGVQLRLETSIGEVERTA---SGFRVTTSAG-TVDAASLVVASGGKSIP  189 (417)
T ss_dssp             HTCEEECSCCEEEEEEET---TEEEEEETTE-EEEESEEEECCCCSSCG
T ss_pred             CCCEEEECCEEEEEEEeC---CEEEEEECCc-EEEeeEEEECCCCccCC
Confidence            367899999999997643   5688988888 89999999999996543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.79  E-value=0.032  Score=40.66  Aligned_cols=33  Identities=9%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++++|+|+|..|..++..|.+.+.+|+++.+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            568999999999999999999999999999984

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.78  E-value=0.027  Score=47.00  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            47999999999999999999999999999874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=94.74  E-value=0.023  Score=47.91  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHh-cc-CeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK-VA-KNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~-~~-~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++ .| .+|+|+++.
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~   55 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG   55 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            479999999999999999999 89 899999885

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=94.69  E-value=0.03  Score=47.59  Aligned_cols=34  Identities=18%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+|+|||+|.+|+-+|..|.+.|.+|++++++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            3578999999999999999999999999999985

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=94.68  E-value=0.016  Score=49.80  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc------CeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~  150 (227)
                      ++|+|||||.+|+-+|..|.+.|      .+|+|++++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~   43 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS   43 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC
Confidence            57999999999999999999999      899999985

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=94.67  E-value=0.031  Score=48.66  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~   44 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEART   44 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            4689999999999999999999999999999853

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.64  E-value=0.012  Score=44.04  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=37.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGA   97 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~   97 (227)
                      .+++++++ +|.+++..+   +.+.+.++++ .+.+|.||+|+|.  .|+++...|.
T Consensus        69 ~gv~v~~~-~v~~i~~~~---~~~~v~~~~g-~i~ad~vI~A~G~--~~~~~~~~g~  118 (180)
T 2ywl_A           69 YGAEVRPG-VVKGVRDMG---GVFEVETEEG-VEKAERLLLCTHK--DPTLPSLLGL  118 (180)
T ss_dssp             TTCEEEEC-CCCEEEECS---SSEEEECSSC-EEEEEEEEECCTT--CCHHHHHHTC
T ss_pred             cCCEEEeC-EEEEEEEcC---CEEEEEECCC-EEEECEEEECCCC--CCCccccCCC
Confidence            35688888 999887533   4588888887 8999999999999  6654333343

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=94.56  E-value=0.029  Score=46.55  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhcc------CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA------KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~------~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|      .+|+|+++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~   38 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR   38 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC
Confidence            6999999999999999999997      899999985

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.51  E-value=0.041  Score=38.92  Aligned_cols=34  Identities=15%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+++|+|+|.+|..+|..|.+.+.+|+++.+..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3589999999999999999999999999998843

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=94.47  E-value=0.026  Score=46.99  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++|+|||+|.+|+-+|..|+ .|.+|+|+++.
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~   40 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLERE   40 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECC
Confidence            467999999999999999999 59999999985

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=94.45  E-value=0.029  Score=48.96  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|++. |.+|+|+++++
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            599999999999999999875 89999998853

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=94.44  E-value=0.028  Score=48.69  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~   49 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   49 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            4679999999999999999999999999999854

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=94.41  E-value=0.028  Score=49.44  Aligned_cols=33  Identities=27%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus         5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~   37 (520)
T 1s3e_A            5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   37 (520)
T ss_dssp             CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            469999999999999999999999999999854

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.37  E-value=0.024  Score=46.64  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|+|+|.+|.-+|..|. .+.+|+++.|+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 889999999854

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=94.36  E-value=0.025  Score=48.95  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         8 dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~   39 (453)
T 3atr_A            8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP   39 (453)
T ss_dssp             SEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            69999999999999999999999999999854

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.35  E-value=0.04  Score=37.70  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|...
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            468999999999999999999998 78999988543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=94.33  E-value=0.033  Score=47.66  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|. +|+|+++.
T Consensus         7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~   39 (438)
T 3dje_A            7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY   39 (438)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            469999999999999999999998 99999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=94.28  E-value=0.037  Score=48.99  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHh---ccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~  150 (227)
                      ..+|+|||||.+|+-+|..|++   .|.+|+|+++.
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   40 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESA   40 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            3579999999999999999999   89999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=94.27  E-value=0.04  Score=49.00  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHh---ccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~  150 (227)
                      ..+|+|||||.+|+-+|..|++   .|.+|+|+++.
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            4579999999999999999999   88999999874

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=94.25  E-value=0.031  Score=49.15  Aligned_cols=34  Identities=15%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.| .+|+|+++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~   42 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD   42 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            357999999999999999999999 9999999854

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=94.24  E-value=0.042  Score=46.61  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            479999999999999999999999999999853

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=94.21  E-value=0.011  Score=51.66  Aligned_cols=104  Identities=9%  Similarity=-0.093  Sum_probs=56.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCC-CCCcccceeeecC-----CCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYE-GADLFRGLQMHSH-----DYRVPD  114 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~-g~~~~~~~~~~~~-----~~~~~~  114 (227)
                      .+++++.+++| ++...+.......+.+.++ .+.+|.||+|||.  .+..++++ +.....+..+...     ...+.+
T Consensus       132 ~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg--~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e  207 (472)
T 2e5v_A          132 EGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGG--YSYLYEYSSTQSTNIGDGMAIAFKAGTILADME  207 (472)
T ss_dssp             TTCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCC--CGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTT
T ss_pred             CCCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCC--CcccCccccCCCCCchHHHHHHHHcCCCEeCCc
Confidence            46789999999 8864321000123333444 5789999999999  44444432 1111122211111     122222


Q ss_pred             CCCCC-eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQ-NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~-~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.. +++++|+|  +.+++..+...|..+ +..++.
T Consensus       208 ~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~  242 (472)
T 2e5v_A          208 FVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGE  242 (472)
T ss_dssp             CEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCC
T ss_pred             ceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCC
Confidence            22222 34455766  888888888888776 665533

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.17  E-value=0.035  Score=47.22  Aligned_cols=32  Identities=16%  Similarity=0.399  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.  |.+|+|+++.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3699999999999999999999  9999999874

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=94.15  E-value=0.035  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            369999999999999999999999999998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.11  E-value=0.04  Score=39.17  Aligned_cols=36  Identities=14%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..++++|+|+|.+|..++..|.+.+.+|+++.+...
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~   40 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   40 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999999999999999999999999988443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.10  E-value=0.051  Score=38.86  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .++++|+|+|..|..+|..|.+.|.+|+++.+.+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999988543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=94.10  E-value=0.032  Score=48.00  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=29.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc-CeEEEEee
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHH  149 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~  149 (227)
                      ..|+|||+|.+|+-+|..|++.| .+|+|+++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 89999998

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=94.09  E-value=0.038  Score=48.66  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            469999999999999999999999999999853

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.08  E-value=0.051  Score=49.58  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            68999999999999999999999999999974

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=94.00  E-value=0.045  Score=49.71  Aligned_cols=83  Identities=10%  Similarity=-0.042  Sum_probs=53.6

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcE-EEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCL-HFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~-~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      ++++ ++.+|..+...+   +.. .|.+.++..+.+|.||+|||.+  +..+.++|...+.      .         ++ 
T Consensus       132 GV~I-~~~~V~~L~~d~---g~V~GV~t~~G~~i~Ad~VVLATG~~--s~~~i~~G~~~~~------~---------g~-  189 (641)
T 3cp8_A          132 NIDL-LQDTVIGVSANS---GKFSSVTVRSGRAIQAKAAILACGTF--LNGLIHIGMDHFP------G---------GR-  189 (641)
T ss_dssp             TEEE-EECCEEEEEEET---TEEEEEEETTSCEEEEEEEEECCTTC--BTCEEEETTEEEE------C---------SS-
T ss_pred             CCEE-EeeEEEEEEecC---CEEEEEEECCCcEEEeCEEEECcCCC--CCccceeeeeeec------c---------cc-
Confidence            5666 456788776432   333 3666777789999999999993  3433344432210      0         11 


Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +  + |+.++.+++..|.+.|.+|+.+..
T Consensus       190 ~--v-G~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          190 S--T-AEPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             S--T-TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             c--c-CCchhhhhHHHHHhCCceEEeecC
Confidence            1  1 467889999999999999877644

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.99  E-value=0.036  Score=48.60  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             CeEEEEccCccHHHHHHHHHh---ccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK---VAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~---~~~~Vtli~~~  150 (227)
                      .+|+|||||.+|+-+|..|++   .|.+|+|+++.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~   37 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG   37 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence            479999999999999999999   89999999874

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=93.99  E-value=0.043  Score=47.14  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   38 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARD   38 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            479999999999999999999999999999853

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=93.97  E-value=0.041  Score=48.59  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~   38 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP   38 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            469999999999999999999999999999853

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=93.95  E-value=0.04  Score=48.38  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus         5 DVvIIGgGi~G~~~A~~La~~G~~V~llE~~   35 (501)
T 2qcu_A            5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAQ   35 (501)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEECC
Confidence            5999999999999999999999999999874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.88  E-value=0.058  Score=44.86  Aligned_cols=47  Identities=4%  Similarity=-0.125  Sum_probs=36.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNI   91 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~   91 (227)
                      .++.++++++|.++...+   +.+.+.+.++. +.+|.||+|+|.+.....
T Consensus       162 ~G~~i~~~~~V~~i~~~~---~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~  208 (372)
T 2uzz_A          162 AGCAQLFNCPVTAIRHDD---DGVTIETADGE-YQAKKAIVCAGTWVKDLL  208 (372)
T ss_dssp             TTCEEECSCCEEEEEECS---SSEEEEESSCE-EEEEEEEECCGGGGGGTS
T ss_pred             CCCEEEcCCEEEEEEEcC---CEEEEEECCCe-EEcCEEEEcCCccHHhhc
Confidence            367889999999998633   45788887774 999999999999654333

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.83  E-value=0.061  Score=41.56  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +....+|.|||.|.+|.-+|..|.+.+.+|+++.|..
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3456789999999999999999999999999998743

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=93.82  E-value=0.056  Score=47.11  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~   46 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   46 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence            4689999999999999999999999999999854

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=93.82  E-value=0.05  Score=47.85  Aligned_cols=32  Identities=25%  Similarity=0.515  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus        13 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~   44 (499)
T 2qa2_A           13 ASVIVVGAGPAGLMLAGELRLGGVDVMVLEQL   44 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            47999999999999999999999999999985

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.82  E-value=0.033  Score=45.16  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++|.|||.|.+|.-+|..|.+.|.+|+++.|....
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            57999999999999999999999999999885443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.78  E-value=0.067  Score=40.09  Aligned_cols=37  Identities=16%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhc-cCeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~~  152 (227)
                      ..+++++|+|.|.+|..+|..|.+. |.+|+++.+...
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            3467899999999999999999998 999999988543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.78  E-value=0.094  Score=37.61  Aligned_cols=36  Identities=17%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .++++|+|.|..|..+|..|.+.|.+|+++.+....
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~   42 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTR   42 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            468999999999999999999999999999985443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.77  E-value=0.046  Score=47.33  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~   44 (453)
T 2bcg_G           12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   44 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            469999999999999999999999999999853

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=93.74  E-value=0.047  Score=48.20  Aligned_cols=33  Identities=21%  Similarity=0.159  Sum_probs=30.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHh------------ccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK------------VAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~------------~~~~Vtli~~~  150 (227)
                      ..+|+|||||.+|+-+|..|++            .|.+|+|+++.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~   51 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESP   51 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCC
Confidence            3589999999999999999999            78999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=93.72  E-value=0.047  Score=49.97  Aligned_cols=32  Identities=16%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            57999999999999999999999999999984

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=93.72  E-value=0.047  Score=44.41  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||+|.+|.-+|..|.+.|.+|+++.|...
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   37 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPA   37 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            3799999999999999999999999999988543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=93.72  E-value=0.048  Score=49.52  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||||.+|+++|..+++.|.+|+|+++.
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~   53 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSD   53 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEec
Confidence            36999999999999999999999999999885

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=93.70  E-value=0.05  Score=47.85  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++..
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   44 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV   44 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            469999999999999999999999999999753

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=93.70  E-value=0.049  Score=44.86  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=29.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHh--ccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK--VAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~--~~~~Vtli~~~~  151 (227)
                      +..|+|||+|++|+-.|..|++  .|.+|+++++..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            3469999999999999999974  488999999853

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=93.70  E-value=0.049  Score=48.42  Aligned_cols=33  Identities=24%  Similarity=0.522  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+|+++..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            369999999999999999999999999999853

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.69  E-value=0.058  Score=46.97  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.+++|+|||+|.+|...+..|.+.|.+|+++...
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            46899999999999999999999999999999873

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=93.65  E-value=0.053  Score=46.88  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|  .+|+++++++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            57999999999999999999999  8999999843

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.64  E-value=0.076  Score=45.38  Aligned_cols=45  Identities=4%  Similarity=-0.108  Sum_probs=36.8

Q ss_pred             cceeEEeCc---eEEEEEEeeCCCCcEE-EecCCeeEEEcCEEEEccCCCCC
Q psy810           41 PCIEIKFGS---SWAEIEKFSVPTKCLH-FANEEITLHYNLLQSLPSSHNSV   88 (227)
Q Consensus        41 ~~~~i~~~~---~V~~i~~~~~~~~~~~-v~~~~~~~~~~~~vilAtG~~~~   88 (227)
                      .++.+++++   +|.+|...+   +.+. |.+.++..+.+|.||+|+|.+..
T Consensus       174 ~Gv~i~~~t~~~~V~~i~~~~---~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          174 MGVKFVTGTPQGRVVTLIFEN---NDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             TTCEEEESTTTTCEEEEEEET---TEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             cCCEEEeCCcCceEEEEEecC---CeEEEEEECCCCEEECCEEEECCCCChh
Confidence            467899999   999998633   5566 88888878999999999999653

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=93.60  E-value=0.05  Score=48.73  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            36999999999999999999999999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.57  E-value=0.055  Score=44.69  Aligned_cols=35  Identities=11%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            46899999999999999999999999999988543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=93.53  E-value=0.052  Score=48.48  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..|+|||+|.+|+.+|..+++.|.+|+|+++.+
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998753

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=93.43  E-value=0.063  Score=45.89  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            479999999999999999999999999999843

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.41  E-value=0.051  Score=45.07  Aligned_cols=73  Identities=10%  Similarity=0.024  Sum_probs=48.6

Q ss_pred             CCeEEEEccCccHHH-HHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCC---CEE---eccEEE
Q psy810          118 DQNVLLVGFGPSGVD-IAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDD---TSH---PFDSII  190 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e-~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g---~~i---~~D~vi  190 (227)
                      .++|.+||.|-+|+. +|..|.++|.+|+++.++....   .         ...+...++.+..|   ..+   .+|.||
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~---~---------~~~L~~~gi~v~~g~~~~~l~~~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPP---M---------STQLEALGIDVYEGFDAAQLDEFKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTT---H---------HHHHHHTTCEEEESCCGGGGGSCCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcH---H---------HHHHHhCCCEEECCCCHHHcCCCCCCEEE
Confidence            478999999999996 8889999999999998743210   0         00111112222111   112   489999


Q ss_pred             Ecccccccccccccc
Q psy810          191 YCTGAYKYSYKLTFL  205 (227)
Q Consensus       191 ~atG~~~~~~~~~~l  205 (227)
                      ...| ..++.  +.+
T Consensus        72 ~Spg-i~~~~--p~~   83 (326)
T 3eag_A           72 IGNV-AKRGM--DVV   83 (326)
T ss_dssp             ECTT-CCTTC--HHH
T ss_pred             ECCC-cCCCC--HHH
Confidence            9999 98887  655

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=93.32  E-value=0.061  Score=45.80  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|++. |.+|+|+++++
T Consensus         8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~   41 (399)
T 1v0j_A            8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP   41 (399)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4699999999999999999998 99999999853

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=93.30  E-value=0.073  Score=48.49  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~  140 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  140 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46799999999999999999999999999999853

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=93.30  E-value=0.07  Score=44.88  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   34 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            58999999999999999999999999999843

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=93.29  E-value=0.064  Score=47.91  Aligned_cols=31  Identities=26%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus        20 DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~   50 (561)
T 3da1_A           20 DLLVIGGGITGAGIALDAQVRGIQTGLVEMN   50 (561)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            6999999999999999999999999999885

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.19  E-value=0.099  Score=40.67  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             CCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          114 DPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       114 ~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ..+.+++|+|.|+ |.+|..++..|.+.|.+|+++.|....
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~   57 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ   57 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH
Confidence            3456899999997 999999999999999999999996543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=93.19  E-value=0.065  Score=47.81  Aligned_cols=32  Identities=31%  Similarity=0.553  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..+++.|.+|+|+++.+
T Consensus       123 DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            69999999999999999999999999998753

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=93.19  E-value=0.066  Score=46.58  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~   72 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARD   72 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            579999999999999999999999999999853

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.19  E-value=0.08  Score=44.00  Aligned_cols=43  Identities=5%  Similarity=-0.136  Sum_probs=36.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+   +.+.|.+.++ .+.+|+||+|+|.+.
T Consensus       167 ~Gv~i~~~~~V~~i~~~~---~~~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          167 NQGQVLCNHEALEIRRVD---GAWEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             TTCEEESSCCCCEEEEET---TEEEEECSSE-EEEESEEEECCGGGH
T ss_pred             CCCEEEcCCEEEEEEEeC---CeEEEEeCCC-EEEcCEEEECCChhH
Confidence            367899999999998644   4588988888 799999999999854

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=93.16  E-value=0.071  Score=44.67  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      -.|+|||+|.+|+-+|..|++.  +.+|+|+++..
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3699999999999999999997  89999999853

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=93.10  E-value=0.15  Score=41.81  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++.||+++|||.+. .|.=+|+.|.+.+..||+.|++.
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T  213 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT  213 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC
Confidence            356799999999766 57789999999999999998854

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=93.09  E-value=0.069  Score=44.41  Aligned_cols=31  Identities=32%  Similarity=0.441  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.  +.+|+++++.
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~   99 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS   99 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecC
Confidence            699999999999999999998  8999999984

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.09  E-value=0.17  Score=41.38  Aligned_cols=36  Identities=14%  Similarity=0.247  Sum_probs=27.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      ++|.+||-|.+|.-+|..|.+.|.+|+++.|.....
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~   41 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKA   41 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence            579999999999999999999999999998855443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=93.06  E-value=0.12  Score=44.70  Aligned_cols=45  Identities=9%  Similarity=-0.078  Sum_probs=35.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+.  ..+.|.+.++..+.+|.||+|||.++
T Consensus       147 ~GV~i~~~~~V~~i~~~~~--~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          147 LGVKIRTNTPVETIEYENG--QTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             TTCEEECSCCEEEEEEETT--EEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CCCEEEeCcEEEEEEecCC--cEEEEEECCCCEEECCEEEECCCCCc
Confidence            4678999999999985321  23778887777799999999999955

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=93.06  E-value=0.088  Score=49.46  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|||+|.+|+-+|..|.+.|.+|+|+++++
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~  311 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  311 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            35789999999999999999999999999999843

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.99  E-value=0.081  Score=46.35  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhc-cC-eEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV-AK-NVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~-~~-~Vtli~~~~~  152 (227)
                      .+|.|||.|.+|.-+|..|++. |. +|+++.+...
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            5899999999999999999999 99 9999998655

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=92.69  E-value=0.078  Score=48.10  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=30.1

Q ss_pred             CeEEEEccCccHHHHHHHHHh-ccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEK-VAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~-~~~~Vtli~~~~  151 (227)
                      -.|+|||+|.+|+-+|..|++ .|.+|+|+++.+
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            369999999999999999999 899999998753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.61  E-value=0.12  Score=42.69  Aligned_cols=45  Identities=2%  Similarity=-0.158  Sum_probs=35.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCe--eEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEI--TLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~--~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+.  +.+.+.+.++  ..+.+|.||+|+|.+.
T Consensus       163 ~Gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          163 DGAQLVFHTPLIAGRVRPE--GGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             TTCEEECSCCEEEEEECTT--SSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             CCCEEECCCEEEEEEEcCC--ceEEEEECCCceeEEEeCEEEECCCcch
Confidence            3678999999999986432  3477877766  5899999999999854

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=92.50  E-value=0.087  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.559  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhc------cCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV------AKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~------~~~Vtli~~~  150 (227)
                      -.|+|||+|.+|+-+|..|++.      |.+|+|+++.
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~   73 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA   73 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence            3699999999999999999998      8999999885

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=92.45  E-value=0.095  Score=46.08  Aligned_cols=31  Identities=19%  Similarity=0.550  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus        43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~   73 (510)
T 4at0_A           43 DVVVAGYGIAGVAASIEAARAGADVLVLERT   73 (510)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            5999999999999999999999999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.42  E-value=0.14  Score=40.51  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ....++|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            44578999999999999999999999999999988543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=92.32  E-value=0.094  Score=49.02  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=30.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      ..|+|||||.+|+-+|..|++.|. +|+|+++..
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            469999999999999999999997 899998853

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=92.21  E-value=0.12  Score=45.21  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|.+.| .+|+++++++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~   43 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND   43 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            357999999999999999999998 7999999853

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.11  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.179  Sum_probs=29.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC--------eEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK--------NVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~--------~Vtli~~~~  151 (227)
                      +.+|.|+|+|..|.=+|..|++.+.        +|+|+.|+.
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~   75 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEE   75 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcch
Confidence            5589999999999999999998753        599998854

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=92.08  E-value=0.13  Score=47.74  Aligned_cols=33  Identities=21%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.+|+|||+|.+|+-.|..|.+.|.+|++++++
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~  368 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK  368 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            468999999999999999999999999999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.05  E-value=0.12  Score=44.68  Aligned_cols=80  Identities=11%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceE-EcCCccEE-----eCCceEEcCCCEEeccEEE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVV-QKPDIKRL-----LQDSVVFQDDTSHPFDSII  190 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~-~~~~i~~~-----~~~~v~~~~g~~i~~D~vi  190 (227)
                      .|.++.|||.|.+|.=+|..|++.|.+|+++.+........-..... ..+.+.++     ....+.+++. .-.+|.+|
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd-~~~aDvvi   88 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT-PEASDVFI   88 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS-CCCCSEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc-hhhCCEEE
Confidence            37789999999999999999999999999998855433211111111 11122111     1233444332 12689999


Q ss_pred             Eccccccc
Q psy810          191 YCTGAYKY  198 (227)
Q Consensus       191 ~atG~~~~  198 (227)
                      +|.+ ...
T Consensus        89 i~Vp-Tp~   95 (431)
T 3ojo_A           89 IAVP-TPN   95 (431)
T ss_dssp             ECCC-CCB
T ss_pred             EEeC-CCc
Confidence            9988 544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.01  E-value=0.068  Score=38.50  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +++|+|+|+|.+|..++..|...+.+|+++.|..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            7899999999999999999988888899988854

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.94  E-value=0.14  Score=41.32  Aligned_cols=34  Identities=24%  Similarity=0.150  Sum_probs=30.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6899999999999999999999999999988543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.93  E-value=0.19  Score=40.41  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.+++++|+|+|.+|.-+|..|.+.|.+|+++.|..
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3468899999999999999999999999999998854

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=91.91  E-value=0.2  Score=40.89  Aligned_cols=38  Identities=24%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..++++.|+|.|.+|..+|..+...|.+|+++.|..
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45678999999999999999999999999999998853

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.89  E-value=0.16  Score=43.07  Aligned_cols=36  Identities=11%  Similarity=0.200  Sum_probs=32.6

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+++|+|+|+|.+|..+|..+..+|.+|+++.++..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999999999999999999999999988654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=91.80  E-value=0.2  Score=40.78  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|+|.|.+|..+|..+...|.+|+++.|..
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            45678999999999999999999999999999998853

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.75  E-value=0.2  Score=45.84  Aligned_cols=44  Identities=5%  Similarity=0.083  Sum_probs=35.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCee-EEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEIT-LHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~-~~~~~~vilAtG~~~   87 (227)
                      .++.++++++|.++...+   +.+.+.+.++. .+.+|.||+|+|.+.
T Consensus       425 ~Gv~i~~~t~V~~l~~~~---~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          425 NGMTCHYQHELQRLKRID---SQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             TTCEEEESCCEEEEEECS---SSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             CCCEEEeCCeEeEEEEeC---CeEEEEeCCCcEEEECCEEEECCCcch
Confidence            467899999999998644   45888887776 799999999999964

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=91.75  E-value=0.38  Score=42.19  Aligned_cols=21  Identities=38%  Similarity=0.842  Sum_probs=18.7

Q ss_pred             eEEEEccCccHHHHHHHHHhc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      .|+|||+|++|+-+|..|.+.
T Consensus        41 Dvi~IGaGp~gLa~A~~L~~~   61 (501)
T 4b63_A           41 DLLCVGFGPASLAIAIALHDA   61 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH
T ss_pred             cEEEEcccHHHHHHHHHHHhc
Confidence            499999999999999988764

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=91.64  E-value=0.14  Score=46.78  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHh-----ccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEK-----VAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~-----~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|++     .|.+|+|+++.+
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~   46 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   46 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence            59999999999999999999     899999999753

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.63  E-value=0.23  Score=41.11  Aligned_cols=36  Identities=8%  Similarity=0.108  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEccCcc-HHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPS-GVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~-g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..+++++|||+|.+ |.-+|..|.+.+..||+..|.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            567999999999975 999999999999999999774

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.61  E-value=0.4  Score=35.88  Aligned_cols=35  Identities=14%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++++|.|+ |.+|..++..|.+.+.+|+++.|....
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~   39 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR   39 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence            68999997 999999999999999999999985543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=91.60  E-value=0.13  Score=44.91  Aligned_cols=30  Identities=20%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus         2 VvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            2 IYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            899999999999999999999999999874

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=91.55  E-value=0.2  Score=41.23  Aligned_cols=41  Identities=12%  Similarity=-0.024  Sum_probs=35.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      +.+|+++++|.+|+..+   +.|.+.+.++..+.+|+||+|+..
T Consensus       123 g~~i~~~~~V~~i~~~~---~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          123 GAEVYFRHRVTQINLRD---DKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             TCEEESSCCEEEEEECS---SSEEEEESSSCCEEESEEEECSCH
T ss_pred             CCEEEeCCEEEEEEEcC---CEEEEEECCCCEEEcCEEEECCCH
Confidence            57899999999998633   679998888877899999999985

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.54  E-value=0.21  Score=45.51  Aligned_cols=44  Identities=9%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .++.++++++|.++...+   +.+.+.+.++..+.+|.||+|+|.+.
T Consensus       430 ~Gv~i~~~t~V~~l~~~~---~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          430 QGLQIYYQYQLQNFSRKD---DCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             TTCEEEESCCEEEEEEET---TEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             CCCEEEeCCeeeEEEEeC---CeEEEEECCCCEEECCEEEECCCcch
Confidence            367899999999998644   56888887766899999999999954

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=91.53  E-value=0.11  Score=44.13  Aligned_cols=39  Identities=8%  Similarity=0.071  Sum_probs=32.8

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      +|+++++|.+|+..+   +...|.+.++..+.+|+||+|+|.
T Consensus       219 ~i~~~~~V~~i~~~~---~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          219 EIRLQTVVTGIDQSG---DVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             CEESSCCEEEEECSS---SSEEEEETTSCCEEEEEEEECSCG
T ss_pred             ceEeCCEEEEEEEcC---CeEEEEECCCCEEEeCEEEEecCc
Confidence            789999999997533   567888888878999999999993

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=91.41  E-value=0.24  Score=41.76  Aligned_cols=43  Identities=7%  Similarity=-0.147  Sum_probs=36.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +++++++++|.++...+   +.+.+.+.+++.+.+|.||.|+|.++
T Consensus       111 ~~~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~ad~vV~AdG~~S  153 (397)
T 2vou_A          111 PERYHTSKCLVGLSQDS---ETVQMRFSDGTKAEANWVIGADGGAS  153 (397)
T ss_dssp             STTEETTCCEEEEEECS---SCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CcEEEcCCEEEEEEecC---CEEEEEECCCCEEECCEEEECCCcch
Confidence            56899999999998633   56888888888899999999999954

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.40  E-value=0.19  Score=41.30  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|+|+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999843

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.35  E-value=0.18  Score=41.07  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||+|.+|.-+|..+++.|.+|+++.+...
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999988543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.34  E-value=0.19  Score=40.21  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|.|||+|.+|.-+|..|.+.|.+|+++.|...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            689999999999999999999999999988543

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=91.31  E-value=0.17  Score=45.85  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus        48 dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~   78 (623)
T 3pl8_A           48 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG   78 (623)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCcEEEEecc
Confidence            6999999999999999999999999999874

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=91.29  E-value=0.23  Score=44.22  Aligned_cols=45  Identities=11%  Similarity=-0.028  Sum_probs=36.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+.  ..+.+.+.+++.+.+|.||+|+|.+.
T Consensus       233 ~Gv~I~~~t~V~~I~~~~~--~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          233 LGGEIRFSTRVDDLHMEDG--QITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             TTCEEESSCCEEEEEESSS--BEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             cCCEEEeCCEEEEEEEeCC--EEEEEEECCCCEEECCEEEECCCCCh
Confidence            4679999999999975332  34667888888899999999999954

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=91.27  E-value=0.17  Score=45.46  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus         9 DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~   39 (588)
T 2wdq_A            9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            5999999999999999999999999999874

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=91.24  E-value=0.28  Score=38.52  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcc-----------------CccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGF-----------------GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGg-----------------G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.+++|+|-||                 |-+|..+|..+.+.|.+|+++++.
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~   57 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGP   57 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            56899999998                 679999999999999999999873

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.20  E-value=0.19  Score=41.13  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+|+|+|+|.+|.-+|..|.+.|.+|+++.|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999843

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=91.18  E-value=0.15  Score=45.60  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...|+|||+|.+|+.+|..+.+.|.+|+++++.+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~  159 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP  159 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3479999999999999999999999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.12  E-value=0.28  Score=40.19  Aligned_cols=35  Identities=20%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      -.+|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999988544

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.06  E-value=0.3  Score=40.59  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.|..
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            45678999999999999999999999999999988744

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.05  E-value=0.37  Score=40.17  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      |+|+|+|||..|.+++..+.+.|-+|.++...+.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999977443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.99  E-value=0.19  Score=41.61  Aligned_cols=34  Identities=29%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|-+|..+|..+++.|.+|+|+...+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999998743

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.99  E-value=0.25  Score=39.83  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +++++|+|+|-+|--++..|.+.|.+|+++.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            78999999999999999999999999999999644

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.90  E-value=0.25  Score=39.45  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .++|+|.|+|.+|..++..|.+.|.+|+.+.|...
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999998543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=90.84  E-value=0.27  Score=41.33  Aligned_cols=43  Identities=7%  Similarity=0.027  Sum_probs=35.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcE--EEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCL--HFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~--~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +++++++++|.++...+   +.+  .+.+.+++.+.+|.||.|+|.++
T Consensus       122 gv~i~~~~~v~~i~~~~---~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          122 TVEMLFETRIEAVQRDE---RHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             TEEEECSCCEEEEEECT---TSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             CcEEEcCCEEEEEEEcC---CceEEEEEECCCCEEECCEEEECCCCCh
Confidence            57899999999998633   456  78777777899999999999854

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.80  E-value=0.21  Score=40.22  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+++++|+|+|.+|.-++..|.+.|.+|+++.|..
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3467899999999999999999999999999999854

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.77  E-value=0.28  Score=41.36  Aligned_cols=35  Identities=9%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.+++|+|+|.|++|..+|..|.+.|.+|+++.+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            57799999999999999999999999999997665

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=90.72  E-value=0.25  Score=42.26  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .+.+|+|+|+|.+|..+|..+..+|.+|+++.++...
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~  225 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAA  225 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4689999999999999999999999999999886543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.70  E-value=0.33  Score=40.37  Aligned_cols=38  Identities=16%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46778999999999999999999999999999888744

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.67  E-value=0.32  Score=40.31  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45678999999999999999999999999999988743

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.63  E-value=0.2  Score=43.07  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         7 ~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~   38 (433)
T 1d5t_A            7 YDVIVLGTGLTECILSGIMSVNGKKVLHMDRN   38 (433)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46999999999999999999999999999884

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=90.62  E-value=0.46  Score=38.74  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|..+|..+...|-+|+.+.|..
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  155 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS  155 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSC
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccc
Confidence            35678999999999999999999999999999998743

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.61  E-value=0.33  Score=37.77  Aligned_cols=43  Identities=5%  Similarity=-0.198  Sum_probs=31.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +++++ +++|.++...+.  ..+.+.+.++..+.+|.||+|+|.+.
T Consensus        83 gv~i~-~~~v~~i~~~~~--~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           83 PLHLF-QATATGLLLEGN--RVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             TEEEE-ECCEEEEEEETT--EEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             CcEEE-EeEEEEEEEeCC--EEEEEEECCCCEEECCEEEECCCCCh
Confidence            45666 578888875332  23457777777899999999999954

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=90.48  E-value=0.3  Score=42.36  Aligned_cols=40  Identities=5%  Similarity=-0.064  Sum_probs=34.3

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      ++|+++++|.+|...+   +.+.|.+.++..+.+|+||+|+|.
T Consensus       271 ~~i~~~~~V~~i~~~~---~~v~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          271 LGYVFGCPVRSVVNER---DAARVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             EEEESSCCEEEEEECS---SSEEEEETTCCEEEEEEEEECCCG
T ss_pred             eEEEeCCEEEEEEEcC---CEEEEEECCCCEEEcCEEEECCCH
Confidence            6799999999998633   568888888878999999999997

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.46  E-value=0.29  Score=41.83  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+++|+|+|+|.+|..++..+..+|.+|+++.++..
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4578999999999999999999999999999988544

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.46  E-value=0.31  Score=38.82  Aligned_cols=34  Identities=9%  Similarity=0.067  Sum_probs=31.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|+|.|+|.+|..++..|.+.|.+|+.+.|+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            6899999999999999999999999999999544

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=90.46  E-value=0.39  Score=39.79  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=34.4

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+..+++|.|||-|.+|-.+|..+...|-+|+.+.|..
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  170 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG  170 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            345678999999999999999999999999999988743

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=90.45  E-value=0.34  Score=40.81  Aligned_cols=42  Identities=14%  Similarity=-0.020  Sum_probs=35.0

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ..++++++|.+++..+   +.+.+.+.++..+.+|.||.|+|.++
T Consensus       141 ~~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          141 DTVIWDRKLVMLEPGK---KKWTLTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             TSEEESCCEEEEEECS---SSEEEEETTSCCEEESEEEECSCTTC
T ss_pred             CEEEECCEEEEEEECC---CEEEEEECCCcEEecCEEEECCCcch
Confidence            4688999999998633   56888888887899999999999954

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=90.45  E-value=0.22  Score=43.57  Aligned_cols=32  Identities=13%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|++.|.+|.++++.+
T Consensus        22 dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~   53 (475)
T 3p1w_A           22 DVIILGTGLKECILSGLLSHYGKKILVLDRNP   53 (475)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeccC
Confidence            69999999999999999999999999999853

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=90.45  E-value=0.27  Score=39.61  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4699999999999999999999999999988544

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=90.41  E-value=0.33  Score=40.42  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..++++.|||.|.+|..+|..+...|.+|+.+.|..
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            46678999999999999999999999999999888743

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=90.35  E-value=0.2  Score=45.33  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus        20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~   50 (621)
T 2h88_A           20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKL   50 (621)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            5999999999999999999999999999874

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=90.33  E-value=0.39  Score=39.54  Aligned_cols=38  Identities=16%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45678999999999999999999999999999888744

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=90.30  E-value=0.19  Score=44.66  Aligned_cols=30  Identities=23%  Similarity=0.537  Sum_probs=28.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++ |.+|+|+++.
T Consensus        10 DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~   39 (540)
T 1chu_A           10 DVLIIGSGAAGLSLALRLAD-QHQVIVLSKG   39 (540)
T ss_dssp             SEEEECCSHHHHHHHHHHTT-TSCEEEECSS
T ss_pred             CEEEECccHHHHHHHHHHhc-CCcEEEEECC
Confidence            59999999999999999999 9999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=90.16  E-value=0.37  Score=39.62  Aligned_cols=38  Identities=18%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.|..
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35678999999999999999999999999999887743

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=90.14  E-value=0.23  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      .+|+|||+|.+|+-+|..|.+.+. +|+++++++
T Consensus         5 ~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            479999999999999999999987 899999843

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=90.13  E-value=0.31  Score=40.87  Aligned_cols=42  Identities=7%  Similarity=-0.037  Sum_probs=34.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHN   86 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~   86 (227)
                      .++.++++++|.++...+   +.+.+.++++ .+.+|.||+|+|.+
T Consensus       166 ~Gv~i~~~~~V~~i~~~~---~~v~v~t~~g-~i~a~~VV~A~G~~  207 (397)
T 2oln_A          166 AGATLRAGETVTELVPDA---DGVSVTTDRG-TYRAGKVVLACGPY  207 (397)
T ss_dssp             TTCEEEESCCEEEEEEET---TEEEEEESSC-EEEEEEEEECCGGG
T ss_pred             cCCEEECCCEEEEEEEcC---CeEEEEECCC-EEEcCEEEEcCCcC
Confidence            357899999999998633   4577877766 69999999999985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.10  E-value=0.35  Score=39.47  Aligned_cols=37  Identities=14%  Similarity=0.299  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      .+.+++++|+|+|.+|.-++..|.+.|. +|+++.|..
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3568899999999999999999999986 999999854

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=90.05  E-value=0.83  Score=32.74  Aligned_cols=35  Identities=20%  Similarity=0.089  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcc----CccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGF----GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGg----G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..++|+|||.    |..|-.++..|.+.|-+|+-+.++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~   50 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN   50 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCC
Confidence            35789999999    999999999999888888777664

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.04  E-value=0.4  Score=39.33  Aligned_cols=38  Identities=18%  Similarity=0.349  Sum_probs=33.8

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45678999999999999999999999999999888744

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=90.02  E-value=0.3  Score=39.53  Aligned_cols=36  Identities=19%  Similarity=0.480  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.+++++|+|+|-+|..+|..|.+.| +|+++.|..
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence            346789999999999999999999999 999998853

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=90.01  E-value=0.51  Score=38.94  Aligned_cols=38  Identities=13%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|-.+|..+...|-+|+.+.|..
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~  172 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR  172 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            45678999999999999999999999999999998744

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=89.96  E-value=0.21  Score=45.56  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=28.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus         7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~   37 (660)
T 2bs2_A            7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (660)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECchHHHHHHHHHHHHCCCcEEEEecc
Confidence            5999999999999999999999999999874

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=89.91  E-value=0.42  Score=40.85  Aligned_cols=40  Identities=8%  Similarity=0.086  Sum_probs=34.6

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+|+++++|.+|+..+   +.+.|.+.+|+.+.+|+||+|+..
T Consensus       248 ~~i~~~~~V~~i~~~~---~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSG---SCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECS---SSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcC---CeEEEEECCCCEEECCEEEECCCH
Confidence            4799999999998643   568999988878999999999986

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=89.89  E-value=0.18  Score=46.38  Aligned_cols=34  Identities=18%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc--------CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA--------KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~--------~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+-+|..|.+.|        .+|+|+++++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            368999999999999999999988        8999999854

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.83  E-value=0.29  Score=40.00  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      -|+|.|||.|.+|..+|..++ .|.+|+++.+.+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            589999999999999999999 9999999988543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=89.82  E-value=0.44  Score=39.59  Aligned_cols=43  Identities=0%  Similarity=-0.234  Sum_probs=34.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEE-EecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLH-FANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~-v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+   +.+. +.+.++ .+.+|.||+|+|.+.
T Consensus       162 ~Gv~i~~~~~v~~i~~~~---~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          162 YGAKLLEYTEVKGFLIEN---NEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             TTCEEECSCCEEEEEESS---SBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             CCCEEECCceEEEEEEEC---CEEEEEEECCc-EEECCEEEECcchhH
Confidence            367899999999988532   4566 777777 799999999999853

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.81  E-value=0.34  Score=40.75  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ...+++|+|+|+|.+|..+|..+...|.+|+++.+...
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            35679999999999999999999999999999988543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.80  E-value=0.22  Score=38.43  Aligned_cols=33  Identities=12%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|+|+|+|..|..+|..|.+.+.+|+++.+...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            589999999999999999999999999998543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=89.76  E-value=0.36  Score=40.85  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ...+++|+|+|.|.+|..++..+..+|.+|+++.++..
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            34689999999999999999999999989999987543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=89.71  E-value=0.23  Score=40.35  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|+|+|+|.+|.-+|..|.+.|.+|+++.|+..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~   36 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAK   36 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccC
Confidence            4799999999999999999998999999999543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.69  E-value=0.37  Score=40.73  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ...+++|+|+|+|.+|..+|..+...|.+|+++.+...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            45689999999999999999999999999999988543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=89.64  E-value=0.24  Score=44.60  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++.|  .+|+|+++.
T Consensus         7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~   39 (602)
T 1kf6_A            7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKV   39 (602)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            5999999999999999999998  899999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=89.62  E-value=0.49  Score=38.66  Aligned_cols=39  Identities=10%  Similarity=0.138  Sum_probs=33.4

Q ss_pred             CCCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          113 PDPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       113 ~~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+.+++|+|.|+ |.+|..++..|.+.|.+|+++.|..
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            34556789999987 9999999999999999999998843

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.61  E-value=0.48  Score=41.23  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -++|.|||+|.+|..+|..+++.|.+|+++.+..
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            3789999999999999999999999999998854

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=89.52  E-value=0.51  Score=39.74  Aligned_cols=42  Identities=12%  Similarity=0.015  Sum_probs=35.9

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ..++++++|.+++..+   +.+.+.+.+++.+.+|.||.|.|.++
T Consensus       140 ~~i~~~~~v~~i~~~~---~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          140 DSVQFGKRVTRCEEDA---DGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             GGEEESCCEEEEEEET---TEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CEEEECCEEEEEEecC---CcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            5789999999998644   56888888888999999999999954

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=89.44  E-value=0.63  Score=38.54  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..++++.|||-|.+|-.+|..+...|-+|+.+.|..
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            45678999999999999999999999999999988743

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=89.42  E-value=0.44  Score=41.10  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+.|++|+|+|.|.+|..+|..+...|.+|+++.+.
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~  243 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVD  243 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4567899999999999999999999999999998874

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=89.35  E-value=0.51  Score=39.36  Aligned_cols=38  Identities=16%  Similarity=0.228  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..++++.|||.|.+|-.+|..+...|-+|+.+.|..
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  204 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRST  204 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            46779999999999999999999999999999887743

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.34  E-value=0.35  Score=38.40  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      +.+++|+|+|.|..|.++|..|.+.|. +++++.+.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            346899999999999999999999985 89999884

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=89.34  E-value=0.54  Score=38.14  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEcc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCT  193 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~at  193 (227)
                      +..+++++|+|+|-+|--++..|.+.|. +|+++.|...+.. .+...+..    ..+.+    +.+   +.+|.||-||
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~-~La~~~~~----~~~~~----l~~---l~~DivInaT  186 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS-EIYGEFKV----ISYDE----LSN---LKGDVIINCT  186 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH-HHCTTSEE----EEHHH----HTT---CCCSEEEECS
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHhcCc----ccHHH----HHh---ccCCEEEECC
Confidence            4568999999999999999999999886 8999998543321 12222210    00000    111   2789999999


Q ss_pred             --cccccc
Q psy810          194 --GAYKYS  199 (227)
Q Consensus       194 --G~~~~~  199 (227)
                        | +.|+
T Consensus       187 p~G-m~~~  193 (282)
T 3fbt_A          187 PKG-MYPK  193 (282)
T ss_dssp             STT-STTS
T ss_pred             ccC-ccCC
Confidence              5 5665

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=89.33  E-value=0.45  Score=41.21  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=32.8

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ....|++|+|+|.|.+|..+|..+..+|.+|++..+
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~  278 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEV  278 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeC
Confidence            356799999999999999999999999999998876

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.33  E-value=0.38  Score=38.71  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             eEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|.|| |++|-.++..|.+.|.+|+.+.|++
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            6899987 9999999999999999999999853

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=89.26  E-value=0.51  Score=38.64  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +..++++.|||.|.+|..+|..+...|.+|+.+.|.
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            567899999999999999999999999999888774

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=89.21  E-value=0.31  Score=40.28  Aligned_cols=32  Identities=13%  Similarity=0.193  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|||+|.+|.-+|..|.+.|.+|+++.|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999984

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.15  E-value=0.47  Score=38.44  Aligned_cols=37  Identities=11%  Similarity=0.251  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      +..+++++|+|+|-+|--++..|.+.| .+|+++.|..
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            456899999999999999999999998 5999999854

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=89.15  E-value=0.46  Score=37.41  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             CCCeEEEEcc-----------------CccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGF-----------------GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGg-----------------G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|++|+|-||                 |-+|..+|..+.+.|.+|+++++.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~   52 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTK   52 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4788998887                 479999999999999999999994

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=89.14  E-value=0.45  Score=39.56  Aligned_cols=43  Identities=0%  Similarity=-0.167  Sum_probs=34.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .++.++++++|.++...+   +.+.+.++++ .+.+|.||+|+|.+.
T Consensus       163 ~Gv~i~~~~~v~~i~~~~---~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          163 RGAKVLTHTRVEDFDISP---DSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             TTCEEECSCCEEEEEECS---SCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             CCCEEEcCcEEEEEEecC---CeEEEEeCCC-EEEeCEEEEecCccH
Confidence            357899999999998633   4577888777 699999999999853

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=89.11  E-value=0.34  Score=39.73  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=29.5

Q ss_pred             CCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ....+++|+|.|+ |.+|..++..|.+.|.+|+.+.|..
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   53 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRP   53 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3445789999997 9999999999999999999998854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.07  E-value=0.61  Score=36.85  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEcc-Cc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          114 DPFRDQNVLLVGF-GP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       114 ~~~~~~~v~VvGg-G~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+.+|+++|.|+ |. +|.++|..|.+.|.+|.++.|...
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            3457899999999 64 999999999999999999988543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=88.99  E-value=0.46  Score=38.33  Aligned_cols=37  Identities=19%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ...+++++|+|+|-+|--++..|.+.| .+|+++.|..
T Consensus       117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            456899999999999999999999998 5999999854

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.90  E-value=0.51  Score=40.67  Aligned_cols=36  Identities=17%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...|++|+|+|.|.+|..+|..+..+|.+|+++.+.
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~d  252 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEID  252 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999999999999999999999988873

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.86  E-value=0.45  Score=41.69  Aligned_cols=36  Identities=14%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+.|++++|+|+|.+|..+|..|+..|.+|.+..+.
T Consensus       262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999999999999998774

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.83  E-value=0.26  Score=39.93  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~~  153 (227)
                      ...+++++|+|+|-+|--++..|.+.|. +|+++.|....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~  153 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSR  153 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            3468899999999999999999999986 89999985443

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.81  E-value=0.54  Score=36.93  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             CCCCCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          111 RVPDPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       111 ~~~~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .....+.+|+++|.|+ |.+|.++|..|.+.|.+|.++.|..
T Consensus        12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3445667899999975 7889999999999999999998843

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=88.76  E-value=0.41  Score=39.76  Aligned_cols=38  Identities=21%  Similarity=0.200  Sum_probs=33.3

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE  179 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            34568999999999999999999999999999887743

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=88.74  E-value=0.48  Score=41.42  Aligned_cols=37  Identities=16%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+++|+|+|.|.+|..+|..+..+|.+|+++.+..
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~  290 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP  290 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCCh
Confidence            5679999999999999999999999999999998843

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=88.72  E-value=0.45  Score=41.76  Aligned_cols=38  Identities=13%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ....+++|+|+|.|.+|..+|..+..+|.+|+++.+..
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            35679999999999999999999999999999998843

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.64  E-value=0.41  Score=38.83  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999988544

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=88.63  E-value=0.32  Score=44.09  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             eEEEEccCccHHHHHHHHH---h-ccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIE---K-VAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~---~-~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..++   + .|.+|+|+++.
T Consensus        24 DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~   58 (643)
T 1jnr_A           24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   58 (643)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCc
Confidence            5999999999999999999   5 78899999874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=88.62  E-value=0.52  Score=38.88  Aligned_cols=38  Identities=13%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee-cC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH-IS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~-~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+ ..
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA  180 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            356789999999999999999999999999998877 44

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.53  E-value=0.55  Score=38.72  Aligned_cols=37  Identities=8%  Similarity=0.148  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      ....+++++|+|+|-+|--++..|.+.|. +|+++.|.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            34568999999999888899999999986 89999995

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=88.51  E-value=0.28  Score=40.80  Aligned_cols=43  Identities=14%  Similarity=-0.065  Sum_probs=34.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+   +.+.+.+.++ .+.+|.||+|+|.+.
T Consensus       177 ~g~~i~~~~~v~~i~~~~---~~~~v~~~~g-~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          177 LGAEIFEHTPVLHVERDG---EALFIKTPSG-DVWANHVVVASGVWS  219 (382)
T ss_dssp             TTCEEETTCCCCEEECSS---SSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             CCCEEEcCCcEEEEEEEC---CEEEEEcCCc-eEEcCEEEECCChhH
Confidence            357889999999987532   4567888777 799999999999854

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=88.44  E-value=0.44  Score=39.59  Aligned_cols=38  Identities=16%  Similarity=0.118  Sum_probs=33.6

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|..+|..+...|-+|+.+.+..
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  178 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP  178 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45678999999999999999999999999999887743

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=88.38  E-value=0.49  Score=38.55  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+++|+|.|+ |.+|..++..|.+.|.+|+++.|...
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            3678999987 99999999999999999999988543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=88.38  E-value=0.62  Score=38.92  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=33.9

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHH-hccCeEEEEeecC
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIE-KVAKNVFLSHHIS  151 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~-~~~~~Vtli~~~~  151 (227)
                      ..+..+++|.|||.|.+|..+|..+. ..|.+|+.+.+..
T Consensus       158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~  197 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP  197 (348)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred             CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCC
Confidence            34677899999999999999999999 8899999887743

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=88.33  E-value=0.27  Score=43.12  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=48.9

Q ss_pred             CCeEEEEccCccHHH-HHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---E-EeccEEEEc
Q psy810          118 DQNVLLVGFGPSGVD-IAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---S-HPFDSIIYC  192 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e-~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~-i~~D~vi~a  192 (227)
                      .++|.|||-|-+|+- +|..|.+.|.+|+....+.....             ..+...++.+..|.   . ..+|.||+.
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~-------------~~l~~~gi~~~~g~~~~~~~~~d~vV~S   88 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVT-------------QHLTALGAQIYFHHRPENVLDASVVVVS   88 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHH-------------HHHHHTTCEEESSCCGGGGTTCSEEEEC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHH-------------HHHHHCCCEEECCCCHHHcCCCCEEEEC
Confidence            579999999999996 89999999999999876432111             11111222222221   1 248999999


Q ss_pred             ccccccccccccc
Q psy810          193 TGAYKYSYKLTFL  205 (227)
Q Consensus       193 tG~~~~~~~~~~l  205 (227)
                      .| ..++.  |.+
T Consensus        89 pg-i~~~~--p~~   98 (494)
T 4hv4_A           89 TA-ISADN--PEI   98 (494)
T ss_dssp             TT-SCTTC--HHH
T ss_pred             CC-CCCCC--HHH
Confidence            99 88877  655

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.29  E-value=0.43  Score=39.48  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||+|.+|.-+|..|.+.|.+|+++.|...
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~   38 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   38 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999998999999988543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.29  E-value=0.41  Score=36.52  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             eEEEEcc-CccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          120 NVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       120 ~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +|+|.|+ |.+|..++..|.+.|.+|+++.|....
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~   36 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK   36 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc
Confidence            5899987 999999999999999999999996443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.27  E-value=0.45  Score=36.70  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=30.3

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..++.|+|.|.+|..+|..|.+.+.+|+++.|...
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999998889999988543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=88.15  E-value=0.65  Score=38.62  Aligned_cols=38  Identities=13%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|..+|..+...|.+|+.+.+..
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  198 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII  198 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45678999999999999999999999999999887743

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=88.12  E-value=0.33  Score=44.28  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhc------cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV------AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~------~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..+++.      |.+|+|+++.
T Consensus        24 DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           24 DLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            499999999999999999987      8899999873

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.11  E-value=0.55  Score=39.82  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      ...+.+|+|+|+|.+|..+|..+...|. +|+++.|.
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4567899999999999999999999876 89999885

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=88.07  E-value=0.48  Score=39.07  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.++.|||.|.+|.-+|..|.+.|.+|+++.|..
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4579999999999999999999999999998853

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=88.06  E-value=0.44  Score=39.07  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +|.|||.|.+|.-+|..|.+.|.+|+++.|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            689999999999999999999999999988

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=88.01  E-value=0.71  Score=38.67  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|||-|.+|..+|..+..+|-+|+.+.|.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~  196 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL  196 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSS
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCC
Confidence            4567999999999999999999999999999988874

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=88.00  E-value=0.69  Score=38.77  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|||-|.+|..+|..+...|-+|+.+.+.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  192 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRE  192 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSH
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCC
Confidence            4567899999999999999999999999999998874

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.96  E-value=0.39  Score=38.63  Aligned_cols=37  Identities=19%  Similarity=0.397  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+++++|+|.|.+|.-+|..|.+.+.+|+++.|..
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            3457899999999999999999999888999998853

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=87.95  E-value=0.52  Score=39.11  Aligned_cols=38  Identities=13%  Similarity=0.242  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|-.+|..+...|-+|+.+.|..
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45678999999999999999999999999999888743

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=87.89  E-value=0.92  Score=38.10  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=31.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|+|+|..|..++..+.++|.+|.++.+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~   44 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPS   44 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999999999999999999999999998763

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.86  E-value=0.62  Score=39.23  Aligned_cols=35  Identities=11%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|+|+|.+|..++..+.++|-+|.++...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~   46 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPT   46 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            46889999999999999999999999999998763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=87.85  E-value=0.31  Score=42.67  Aligned_cols=47  Identities=6%  Similarity=-0.069  Sum_probs=34.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec--C-Ce--eEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN--E-EI--TLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~--~-~~--~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+.+.+.+.+.+  . ++  ..+.+|+||+|+|..+
T Consensus       179 ~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          179 LGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             TTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             CCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            3678999999999875322234577765  3 45  5799999999999944

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.83  E-value=0.56  Score=37.09  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          114 DPFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       114 ~~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+.++.++|.|+ |.+|..+|..|++.|.+|.++.|...
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   64 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVE   64 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4456788888875 77899999999999999999988543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=87.79  E-value=0.62  Score=37.76  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~  152 (227)
                      ...+++++|+|+|-+|.-++..|.+.|. +|+++.|...
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~  162 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS  162 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            4568999999999999999999999886 7999988543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=87.70  E-value=0.64  Score=39.02  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.+|+|+|+|.|++|..+|..+...|.+|.++..
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~  206 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT  206 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999999999999999999999999986544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=87.63  E-value=0.59  Score=39.16  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+++|+|+|+|.+|.-++..+...|.+|+++.|+..
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            4568999999999999999999999889999988543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=87.61  E-value=0.63  Score=37.85  Aligned_cols=35  Identities=14%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+++|+|.|+ |.+|..++..|.+.|.+|+++.|.
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999997 999999999999999999999884

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=87.61  E-value=0.64  Score=38.75  Aligned_cols=40  Identities=10%  Similarity=-0.051  Sum_probs=32.9

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      +++++++++|.+++.     +. .+.+.++..+.+|.||.|+|.++
T Consensus       121 gv~i~~~~~v~~i~~-----~~-~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          121 GVDISVNSEAVAADP-----VG-RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             TCEEESSCCEEEEET-----TT-EEEETTSCEEECSEEEECCCTTC
T ss_pred             CCEEEeCCEEEEEEe-----CC-EEEECCCCEEEcCEEEECCCccH
Confidence            578999999999875     23 67777777899999999999944

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.58  E-value=0.66  Score=35.14  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=30.0

Q ss_pred             eEEEEcc-CccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          120 NVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       120 ~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +|+|.|+ |.+|..++..|.+.|.+|+++.|....
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~   36 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK   36 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence            6899995 999999999999999999999996543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=87.57  E-value=0.64  Score=38.87  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|||-|.+|-.+|..+..+|-+|..+.|.
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~  205 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRT  205 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCC
Confidence            4567899999999999999999999999999988874

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=87.51  E-value=0.49  Score=41.17  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -++|.|||+|.+|.-+|..+++.|.+|+++.+..
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999998854

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=87.48  E-value=0.52  Score=39.16  Aligned_cols=38  Identities=26%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+|+.+.+..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR  179 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            35568999999999999999999999999999888744

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.43  E-value=0.62  Score=39.72  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=32.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      ..+++|+|+|.|.+|.-++..+...|. +|+++.|..
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            468999999999999999999998886 899998854

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=87.43  E-value=0.45  Score=39.93  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=87.38  E-value=0.73  Score=37.93  Aligned_cols=37  Identities=16%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~  150 (227)
                      ....+++++|+|+|-+|--++..|.+.|. +|+++.|.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34568999999999999999999999886 89999995

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.37  E-value=0.59  Score=35.60  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             eEEEEc-cCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +++|+| .|.+|..++..|.+.+.+|+++.|..
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689999 99999999999999999999998853

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=87.34  E-value=0.45  Score=42.08  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|||+|..|+=+|..|++.+.+|.+++++.
T Consensus         9 D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            9 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            59999999999999999999999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=87.33  E-value=0.6  Score=37.59  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..++|+|.|+ |.+|..++..|.+.|.+|+.+.|..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   41 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLR   41 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence            3678999998 9999999999999999999998854

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=87.28  E-value=0.78  Score=36.65  Aligned_cols=39  Identities=10%  Similarity=0.150  Sum_probs=31.8

Q ss_pred             CCCCCCCeEEEEcc-Cc--cHHHHHHHHHhccCeEEEEeecC
Q psy810          113 PDPFRDQNVLLVGF-GP--SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       113 ~~~~~~~~v~VvGg-G~--~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+.+|.++|.|+ |.  +|.++|..|++.|.+|.++.|..
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            34566889999986 45  89999999999999999998854

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.19  E-value=0.24  Score=43.11  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=0.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---ccccCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEccc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---FKHQIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG  194 (227)
                      ++|+|+|||.+|..+|..|.+. .+|+++.+...+   +...++..+.++.+....+-    +.+..--.+|.++.+|+
T Consensus       236 ~~v~I~GgG~ig~~lA~~L~~~-~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~----L~ee~i~~~D~~ia~T~  309 (461)
T 4g65_A          236 RRIMIVGGGNIGASLAKRLEQT-YSVKLIERNLQRAEKLSEELENTIVFCGDAADQEL----LTEENIDQVDVFIALTN  309 (461)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHH----HHHTTGGGCSEEEECCS
T ss_pred             cEEEEEcchHHHHHHHHHhhhc-CceEEEecCHHHHHHHHHHCCCceEEeccccchhh----HhhcCchhhcEEEEccc

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=87.17  E-value=0.57  Score=38.08  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||.|.+|.-+|..|.+.|.+|+++.|...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5799999999999999999999999999988543

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=87.14  E-value=0.66  Score=40.02  Aligned_cols=40  Identities=10%  Similarity=0.023  Sum_probs=34.2

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      ..|+++++|.+|...+   +.+.|.+.+++.+.+|+||+|++.
T Consensus       229 ~~i~~~~~V~~i~~~~---~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          229 PRLQLNKVVREIKYSP---GGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             TTEESSCCEEEEEECS---SCEEEEETTSCEEEESEEEECSCH
T ss_pred             cEEEcCCEEEEEEEcC---CcEEEEECCCCEEEcCEEEEecCH
Confidence            4799999999998643   568888888888999999999987

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=87.11  E-value=0.56  Score=37.50  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|.|||.|.+|..+|..|.+ +.+|+++.|...
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            69999999999999999999 999999988543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.11  E-value=0.62  Score=40.91  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...|++|+|+|.|.+|..+|..+...|.+|+++.+.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4568999999999999999999999999999988744

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=87.04  E-value=0.54  Score=39.26  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=33.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+..+++|.|||-|.+|..+|..+..+|-+|+.+.+..
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~  181 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY  181 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCCh
Confidence            34568999999999999999999999999999998854

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=86.99  E-value=0.48  Score=41.95  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .++|||+|.+|+=+|..|++ +.+|.|+++++.
T Consensus        28 D~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           28 DYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            49999999999999999999 999999998643

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=86.95  E-value=0.41  Score=42.34  Aligned_cols=76  Identities=13%  Similarity=0.115  Sum_probs=48.6

Q ss_pred             CCCCCeEEEEccCccHHH-HHHHHHhccCeEEEEeecCccccccCCCceEEcCCccEEeCCceEEcCCC---EE--eccE
Q psy810          115 PFRDQNVLLVGFGPSGVD-IAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKPDIKRLLQDSVVFQDDT---SH--PFDS  188 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e-~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~~i~~~~~~~v~~~~g~---~i--~~D~  188 (227)
                      -+..++|.+||-|-+|+- +|..|.+.|.+|+....+...      .      ....+...++.+..|.   .+  .+|.
T Consensus        16 ~~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~------~------~~~~L~~~gi~~~~G~~~~~~~~~~d~   83 (524)
T 3hn7_A           16 YFQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYP------P------MSTQLEQAGVTIEEGYLIAHLQPAPDL   83 (524)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCT------T------HHHHHHHTTCEEEESCCGGGGCSCCSE
T ss_pred             eecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCc------H------HHHHHHHCCCEEECCCCHHHcCCCCCE
Confidence            346799999999999997 688888899999998774211      0      0011111222222221   12  4899


Q ss_pred             EEEcccccccccccccc
Q psy810          189 IIYCTGAYKYSYKLTFL  205 (227)
Q Consensus       189 vi~atG~~~~~~~~~~l  205 (227)
                      ||...| ..++.  |.+
T Consensus        84 vV~Spg-i~~~~--p~l   97 (524)
T 3hn7_A           84 VVVGNA-MKRGM--DVI   97 (524)
T ss_dssp             EEECTT-CCTTS--HHH
T ss_pred             EEECCC-cCCCC--HHH
Confidence            999999 88877  665

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=86.93  E-value=0.54  Score=35.95  Aligned_cols=35  Identities=14%  Similarity=0.141  Sum_probs=30.8

Q ss_pred             CeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          119 QNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       119 ~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++|+|.|+ |.+|..++..|.+.|.+|+++.|....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            68999984 999999999999999999999996543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=86.93  E-value=0.8  Score=36.90  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.+++++|+| +|.+|..++..|.+.|.+|+++.|..
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            34688999999 89999999999999998999998853

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=86.84  E-value=0.53  Score=39.36  Aligned_cols=44  Identities=11%  Similarity=-0.107  Sum_probs=34.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+.  ..+.+.+.++ .+.+|.||+|+|.+.
T Consensus       187 ~g~~i~~~~~v~~i~~~~~--~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          187 MGVDIIQNCEVTGFIKDGE--KVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             TTCEEECSCCEEEEEESSS--BEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             CCCEEEcCCeEEEEEEeCC--EEEEEEeCCc-eEECCEEEECCchhH
Confidence            3678999999999885321  3467777777 699999999999843

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=86.82  E-value=0.75  Score=38.46  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|||.|.+|-.+|..+...|-+|+.+.+.
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~  200 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY  200 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCC
Confidence            3567899999999999999999999999999888763

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=86.81  E-value=0.85  Score=35.28  Aligned_cols=36  Identities=17%  Similarity=0.215  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+++++|.|+ |.+|..++..|.+.|.+|+++.|..
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45788999986 8999999999999999999998854

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=86.80  E-value=0.96  Score=35.98  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcc---CccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF---GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg---G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+|+++|.|+   |.+|.++|..|.+.|.+|.++.|..
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999997   5899999999999999999998854

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=86.79  E-value=0.86  Score=35.89  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCCCCeEEEEcc---CccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGF---GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGg---G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+.+|+++|.|+   |.+|..+|..|++.|.+|.++.|.
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~   49 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG   49 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecc
Confidence            34556899999996   489999999999999999999884

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=86.78  E-value=0.6  Score=38.06  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+|.|||.|.+|.-+|..|.+.+.+|+++.|...
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999998889999988543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=86.57  E-value=0.89  Score=35.21  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=31.4

Q ss_pred             CCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+++++|.|+ |.+|..++..|.+.|.+|+++.|..
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45788999986 7999999999999999999998854

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=86.54  E-value=0.95  Score=35.69  Aligned_cols=35  Identities=11%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             CCCCeEEEEcc-Cc--cHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGF-GP--SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGg-G~--~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.+|+++|.|+ |.  +|..+|..|++.|.+|.++.|.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            46889999987 45  8999999999999999999874

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=86.46  E-value=0.78  Score=39.25  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=31.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +.+++|+|+|+|..|..++..+.++|.+|.++..
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~   66 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDP   66 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            4689999999999999999999999999988865

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=86.45  E-value=0.57  Score=40.29  Aligned_cols=39  Identities=15%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+|+++++|.+|+..+   +.+.|.+.+| .+.+|+||+|++.
T Consensus       249 ~~i~~~~~V~~i~~~~---~~~~v~~~~g-~~~ad~vV~a~p~  287 (475)
T 3lov_A          249 SEIRLETPLLAISRED---GRYRLKTDHG-PEYADYVLLTIPH  287 (475)
T ss_dssp             CEEESSCCCCEEEEET---TEEEEECTTC-CEEESEEEECSCH
T ss_pred             CEEEcCCeeeEEEEeC---CEEEEEECCC-eEECCEEEECCCH
Confidence            4799999999998644   5689998888 7999999999997

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=86.41  E-value=1.3  Score=35.71  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEccC---ccHHHHHHHHHhccCeEEEEeecC
Q psy810          114 DPFRDQNVLLVGFG---PSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       114 ~~~~~~~v~VvGgG---~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+.+|.++|.|++   -+|..+|..|++.|.+|.+..|..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34578999999986   789999999999999999998853

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=86.38  E-value=0.62  Score=36.75  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      +|.|||.|.+|.-+|..|.+.+ .+|+++.|...
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~   35 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHH
Confidence            6899999999999999999888 89999988543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=86.34  E-value=0.77  Score=38.68  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..|++|.|||-|.+|-.+|..+..+|-+|+.+.+.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~  208 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPW  208 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSS
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCC
Confidence            4567899999999999999999999999999988774

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=86.27  E-value=0.9  Score=38.19  Aligned_cols=37  Identities=8%  Similarity=0.139  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCe-EEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKN-VFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~-Vtli~~~  150 (227)
                      .+..+++|.|||.|.+|..+|..+...|.+ |+.+.+.
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~  197 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ  197 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSS
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence            466799999999999999999999999987 9888764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=86.25  E-value=0.87  Score=37.31  Aligned_cols=35  Identities=20%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+++|+|.|+ |.+|..++..|.+.|.+|+.+.|..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999985 9999999999999999999998854

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=86.21  E-value=0.39  Score=37.19  Aligned_cols=33  Identities=12%  Similarity=0.206  Sum_probs=29.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEE-EeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFL-SHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtl-i~~~~  151 (227)
                      .+|.|||.|.+|.-+|..|.+.+.+|++ +.|..
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            5799999999999999999999989999 66643

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=86.08  E-value=0.78  Score=37.62  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~  152 (227)
                      ..+|+|||+|.+|.-+|..|++.+. +|+++.+...
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            3589999999999999999998887 8999988543

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=86.08  E-value=2.1  Score=35.50  Aligned_cols=30  Identities=23%  Similarity=0.197  Sum_probs=22.9

Q ss_pred             eEEEEccCccHHHHHHHHHhcc---CeEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~  149 (227)
                      +|.|+|.|.+|.++...|.+..   -+|.-+..
T Consensus         2 kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            6999999999999999887652   35554443

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=86.07  E-value=1.1  Score=35.33  Aligned_cols=38  Identities=5%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEccC---ccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFG---PSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG---~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++.+|.++|-|++   =+|..+|..|++.|.+|.+..|+..
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578999999964   4788999999999999999988543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.07  E-value=0.68  Score=37.23  Aligned_cols=33  Identities=18%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|.|||.|.+|.-+|..|.+.+.+|+++.|...
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            589999999999999999998889999988544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=85.99  E-value=0.67  Score=37.82  Aligned_cols=33  Identities=15%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~~  151 (227)
                      .+|+|+|+|.+|.-+|..|...+.  +|+++.+..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            579999999999999999998877  999998843

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=85.96  E-value=0.92  Score=38.73  Aligned_cols=37  Identities=16%  Similarity=0.310  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..|+++.|||-|.+|..+|..+..+|-+|+.+.+.
T Consensus       141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~  177 (404)
T 1sc6_A          141 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE  177 (404)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4678999999999999999999999999999988773

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=85.90  E-value=0.59  Score=40.90  Aligned_cols=35  Identities=26%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      -++|.|||+|.+|..+|..+++.|.+|+++.+...
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            35799999999999999999999999999988543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	1e-22
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	3e-13
d1w4xa2	235	c.3.1.5 (A:155-389) Phenylacetone monooxygenase {T	0.003

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 86.6 bits (214), Expect = 1e-22
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 88  VPNIPSYEG-ADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
           +PNI   +  A    G  +HS  +R P+ F  ++VL+VG   S  D+   +  VAK+   
Sbjct: 1   IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY 60

Query: 147 SHHISVAFKHQIGDSVVQKPDIKRLLQD--SVVFQDDTS-HPFDSIIYC 192
              +         +S+ Q P+I +       +  +        D +IYC
Sbjct: 61  QSLLGGGDIQN--ESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYC 107

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 64.4 bits (155), Expect = 3e-13
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 88  VPNIPSYEGADLFRGLQMHSHDY-RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL 146
           VP +P++ G   F G   H+ ++   P  F  Q V ++G G SG+ ++  I K A  +F+
Sbjct: 1   VPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV 60

Query: 147 SHH 149
              
Sbjct: 61  FQR 63

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 158 IGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG 194
           +         I+ +    V    +  +  DS++  TG
Sbjct: 199 VHLVDTLSAPIETITPRGVRT-SEREYELDSLVLATG 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.69
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	99.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.62
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.53
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.51
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.49
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.49
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.39
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.38
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.33
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.31
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.3
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.29
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.29
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.28
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.27
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.24
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.23
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.21
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.18
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.1
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.06
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.04
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.03
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.94
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.82
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.73
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.63
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.44
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.4
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.35
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.32
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.3
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.23
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.22
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.19
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.13
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.07
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.02
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.98
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.92
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.92
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.83
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.76
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.73
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.72
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	97.68
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.6
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.59
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.49
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.49
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.46
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.42
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.36
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.31
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.31
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.28
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.28
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	97.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.21
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	97.19
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.08
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.0
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.93
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.9
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.85
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.84
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.78
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.73
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	96.65
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.62
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.61
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.6
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.56
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.52
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.5
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.49
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	96.43
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.41
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	96.33
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	96.25
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.16
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.12
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.09
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.07
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.71
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.48
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.47
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.46
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.44
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	95.15
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.14
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.06
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.99
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.8
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	94.69
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.67
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	94.65
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	94.63
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.61
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.6
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.6
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.59
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	94.51
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	94.48
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	94.34
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.26
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.23
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	94.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.22
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.21
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.19
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	93.94
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.88
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.86
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.76
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.48
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.38
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.33
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.25
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	93.06
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.93
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.85
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.77
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	92.76
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.61
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.38
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.35
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.15
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	91.99
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.82
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	91.67
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.65
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.62
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.6
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.53
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.45
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.44
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.34
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.32
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.99
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	90.9
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.67
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.62
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	90.44
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	90.43
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	90.24
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.2
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.12
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.06
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.95
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	89.87
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.77
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	89.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.57
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.54
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.3
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.28
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	89.18
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.09
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.0
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.99
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	88.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.68
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	88.64
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.44
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	88.24
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	88.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.1
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.86
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	87.86
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.78
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	87.72
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.53
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	87.51
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.24
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.2
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.18
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.13
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.07
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.97
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	86.94
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.6
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.31
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.08
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.01
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	85.94
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.93
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	85.84
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	85.67
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	85.59
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.35
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.29
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.18
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.89
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.87
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.82
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	84.45
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	84.42
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.23
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	84.22
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.16
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	84.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.98
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.85
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.85
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.79
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	83.23
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.08
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	82.98
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	82.78
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	82.59
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	82.46
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	82.1
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	81.86
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.85
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	81.81
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	81.79
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.77
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	81.66
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	81.57
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.44
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	81.4
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	81.12
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	81.12
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	80.92
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	80.92
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.75
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	80.59
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	80.51
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	80.38
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	80.38
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	80.3
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	80.27
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	80.22
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	80.02

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=2.5e-17  Score=115.17  Aligned_cols=100  Identities=27%  Similarity=0.466  Sum_probs=85.2

Q ss_pred             CCCCCCCCcc----cceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCCceEEcC
Q psy810           91 IPSYEGADLF----RGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGDSVVQKP  166 (227)
Q Consensus        91 ~p~~~g~~~~----~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~~i~~~~  166 (227)
                      +|.+||++.|    .|..+|+..|.+..++++|+|+|||+|+||+|+|..|++.+++|++++|+....  ..+.++...+
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~--~~~~~~~~~~   78 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD--IQNESLQQVP   78 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS--CBCSSEEEEC
T ss_pred             CcCCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccc--cccccceecC
Confidence            4788997665    489999999999999999999999999999999999999999988888754322  3566788888


Q ss_pred             CccEEeCCc--eEEcCCCEEe-ccEEEEc
Q psy810          167 DIKRLLQDS--VVFQDDTSHP-FDSIIYC  192 (227)
Q Consensus       167 ~i~~~~~~~--v~~~~g~~i~-~D~vi~a  192 (227)
                      .+.++...+  +.|.||+.+. +|.||+|
T Consensus        79 ~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          79 EITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             CEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             CeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            898887654  9999999975 8999998

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.63  E-value=1e-15  Score=120.28  Aligned_cols=63  Identities=29%  Similarity=0.565  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCcccceeeecCCCC-CCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810           89 PNIPSYEGADLFRGLQMHSHDYR-VPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus        89 p~~p~~~g~~~~~~~~~~~~~~~-~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |++|++||.+.|.|.++|+.+|. +..+++||+|+|||+|.||+|+|..++..+++++++.|+.
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            89999999999999999999995 5678999999999999999999999999999998887753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.62  E-value=2e-16  Score=112.90  Aligned_cols=100  Identities=17%  Similarity=0.262  Sum_probs=77.1

Q ss_pred             CCCCCCCCcccceeeecC-CCCCCC-----CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC----
Q psy810           91 IPSYEGADLFRGLQMHSH-DYRVPD-----PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD----  160 (227)
Q Consensus        91 ~p~~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~----  160 (227)
                      +|++||.+. .   +|+. ...+..     -..+++++|||||++|+|+|..|++++.+||++++.+..+...++.    
T Consensus         1 iP~ipG~~~-~---v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~   76 (121)
T d1d7ya2           1 LPTLQGATM-P---VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD   76 (121)
T ss_dssp             CGGGTTCSS-C---EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHH
T ss_pred             CccCCCCCC-C---EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHH
Confidence            588999864 2   3322 222221     1236899999999999999999999999999999976555443432    


Q ss_pred             -----------ceEEcCCccEEeCCceEEcCCCEEeccEEEEccc
Q psy810          161 -----------SVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       161 -----------~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG  194 (227)
                                 ++..+..++++..+.++++||+++++|.||+|+|
T Consensus        77 ~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          77 FVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence                       4455778889988899999999999999999998

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=4.6e-15  Score=106.43  Aligned_cols=104  Identities=19%  Similarity=0.246  Sum_probs=82.6

Q ss_pred             CCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccccc--------CCCc
Q psy810           90 NIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQ--------IGDS  161 (227)
Q Consensus        90 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~--------~~~~  161 (227)
                      +.+++||.++|.++.++||..||+..+++|+|+|||||++|+|.|..|++.+++|||++|++. +...        -.++
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~-~~~~~~~~~~~~~~~~   80 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-MKADQVLQDKLRSLKN   80 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS-CCSCHHHHHHHHTCTT
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc-cccccccccccccccc
Confidence            346899999999999999999999999999999999999999999999999999999999653 3210        1135


Q ss_pred             eEE--cCCccEEeCC--c---eEEcC---CC--EEeccEEEEccc
Q psy810          162 VVQ--KPDIKRLLQD--S---VVFQD---DT--SHPFDSIIYCTG  194 (227)
Q Consensus       162 i~~--~~~i~~~~~~--~---v~~~~---g~--~i~~D~vi~atG  194 (227)
                      |++  +..+.++.++  .   +++.+   |+  ++++|.+++++|
T Consensus        81 I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          81 VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             eeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            554  4457777653  2   55543   44  489999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.51  E-value=2.9e-14  Score=100.86  Aligned_cols=96  Identities=18%  Similarity=0.391  Sum_probs=71.2

Q ss_pred             CCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC----------
Q psy810           91 IPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD----------  160 (227)
Q Consensus        91 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~----------  160 (227)
                      +|++||++.    .+.+.+..+..+  +++|+|||||++|+|+|..|+++|.+|||++|++..++ .++.          
T Consensus         1 ~P~IpG~e~----~~ts~~~~~l~~--p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l   73 (117)
T d1onfa2           1 FPPVKGIEN----TISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDM   73 (117)
T ss_dssp             CCSCTTGGG----CEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHH
T ss_pred             CcccCCHhH----cCchhHHhccCC--CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHH
Confidence            588999754    234433434333  68999999999999999999999999999999665443 2331          


Q ss_pred             -----ceEEcCCccEEeC--Cc---eEEcCCCEE-eccEEEEcc
Q psy810          161 -----SVVQKPDIKRLLQ--DS---VVFQDDTSH-PFDSIIYCT  193 (227)
Q Consensus       161 -----~i~~~~~i~~~~~--~~---v~~~~g~~i-~~D~vi~at  193 (227)
                           ++..+..+++++.  ++   +++++|+.+ ++|.||+|+
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence                 4455677888853  32   778999987 579999985

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.49  E-value=3e-15  Score=106.84  Aligned_cols=100  Identities=13%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCCcccceeeecCCCCCCCCC-----CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC--
Q psy810           88 VPNIPSYEGADLFRGLQMHSHDYRVPDPF-----RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD--  160 (227)
Q Consensus        88 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~--  160 (227)
                      +|+.|++||.+.    .+....+.+...+     .+++++|||||++|+|+|..|++.|.+|||+++.+..+ . ++.  
T Consensus         1 R~r~p~ipG~e~----~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~-~-~d~~~   74 (122)
T d1xhca2           1 RAREPQIKGKEY----LLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-G-LDEEL   74 (122)
T ss_dssp             EECCCCSBTGGG----EECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-T-CCHHH
T ss_pred             CCCCcCCCCccc----eEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEecccccc-C-CCHHH
Confidence            467899999753    2222222222111     25799999999999999999999999999999955432 2 331  


Q ss_pred             -------------ceEEcCCccEEeCCceEEcCCCEEeccEEEEccc
Q psy810          161 -------------SVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       161 -------------~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG  194 (227)
                                   ++..+..+.++.++++ +.+++.+++|.||+|+|
T Consensus        75 ~~~~~~~l~~~GV~~~~~~~v~~~~~~~v-~~~~~~i~~D~vi~a~G  120 (122)
T d1xhca2          75 SNMIKDMLEETGVKFFLNSELLEANEEGV-LTNSGFIEGKVKICAIG  120 (122)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEECSSEE-EETTEEEECSCEEEECC
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEeCCEE-EeCCCEEECCEEEEEEE
Confidence                         3344667888887776 55788999999999999

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.7e-14  Score=102.00  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=61.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCC-----ce
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQD-----SV  176 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~-----~v  176 (227)
                      .+++++|||||++|+|+|..|+++|.+||+++|++..+.. +..               ++..++.++++..+     .+
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v   98 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTL   98 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEE
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEE
Confidence            3689999999999999999999999999999996544322 221               44556678787543     27


Q ss_pred             EEcCCCEEeccEEEEccc
Q psy810          177 VFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       177 ~~~~g~~i~~D~vi~atG  194 (227)
                      .+++|+++++|.||+|||
T Consensus        99 ~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          99 ELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EETTSCEEEESEEEECSC
T ss_pred             EECCCCEEEcCEEEEecC
Confidence            788999999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.9e-15  Score=105.86  Aligned_cols=101  Identities=19%  Similarity=0.339  Sum_probs=80.0

Q ss_pred             CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccccc------C-----CCc
Q psy810           93 SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQ------I-----GDS  161 (227)
Q Consensus        93 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~------~-----~~~  161 (227)
                      .+||.+.|.++.+|||..||+..+++|+|+|||||++|+|.|..|++.+++||+++|++. ++..      +     ..+
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~-~~~~~~~~~~~~~~~~~~~   80 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-FRAEKILIKRLMDKVENGN   80 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS-CCCCHHHHHHHHHHHHTSS
T ss_pred             cCCCHHHhcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc-ccchhHHHHHHHHhhcccc
Confidence            678888899999999999999999999999999999999999999999999999999653 3210      0     134


Q ss_pred             eEE--cCCccEEeCCc-----eEEcCC------CEEeccEEEEccc
Q psy810          162 VVQ--KPDIKRLLQDS-----VVFQDD------TSHPFDSIIYCTG  194 (227)
Q Consensus       162 i~~--~~~i~~~~~~~-----v~~~~g------~~i~~D~vi~atG  194 (227)
                      +.+  +..+.++.++.     +++.|.      +++++|.+++++|
T Consensus        81 i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          81 IILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             eeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            444  44577776532     556542      3489999999988

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.39  E-value=3e-13  Score=96.63  Aligned_cols=100  Identities=11%  Similarity=0.215  Sum_probs=70.1

Q ss_pred             CCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC---------
Q psy810           89 PNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG---------  159 (227)
Q Consensus        89 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~---------  159 (227)
                      |++|.+|+.+    +++.+.+..+... .+++++|||||++|+|+|..++++|.+||++++++..+.. ++         
T Consensus         2 ~~lP~ip~~~----~i~ts~~~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~   75 (125)
T d1ojta2           2 TKLPFIPEDP----RIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQK   75 (125)
T ss_dssp             CCCSSCCCCT----TEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHH
T ss_pred             CCCCCCCCCC----cEEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHH
Confidence            5666666532    2455555555444 4689999999999999999999999999999996654432 22         


Q ss_pred             ----C--ceEEcCCccEEeC--Cc--eEEcC--C--CEEeccEEEEccc
Q psy810          160 ----D--SVVQKPDIKRLLQ--DS--VVFQD--D--TSHPFDSIIYCTG  194 (227)
Q Consensus       160 ----~--~i~~~~~i~~~~~--~~--v~~~~--g--~~i~~D~vi~atG  194 (227)
                          .  ++..++.+.+++.  ++  +.+.+  |  +.+++|.||+|+|
T Consensus        76 ~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          76 QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence                1  3344566777753  33  44433  3  3689999999999

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.38  E-value=1.7e-13  Score=101.46  Aligned_cols=128  Identities=9%  Similarity=-0.075  Sum_probs=91.9

Q ss_pred             ccCCCCCCCCC-CCCCCCcccceeeecCCCCCCCCCCCCeEEEE--ccCccHHHHHHHHHhccCeEEEEeecCccccccC
Q psy810           82 PSSHNSVPNIP-SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLV--GFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQI  158 (227)
Q Consensus        82 AtG~~~~p~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~Vv--GgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~  158 (227)
                      |||+  .|..| ++||++.-...++.+.+........++.++|+  |||++|+|+|..|+++|.+||++++.+..+....
T Consensus         4 atG~--~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDGT--NCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSCC--CTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred             CCCC--CCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence            8999  77776 89998653223444445555555557777776  9999999999999999999999999543322111


Q ss_pred             C------------C--ceEEcCCccEEeCCceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          159 G------------D--SVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       159 ~------------~--~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      +            .  ++..+..+.++.++++.+.+......+.++.++| ..|+.  ...++.+++.|.
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~g-~~~~~--~~~~~~~le~D~  148 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPG-VSPRD--ANTSHRWIEFDS  148 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCTT-SCSSC--CCCCCEEEECSE
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCcceEEEeeeccccceeeeeeE-EEecc--cCCccCcEecce
Confidence            1            1  4455667888888888887666666777777788 77777  777777777653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=1.6e-13  Score=98.54  Aligned_cols=101  Identities=15%  Similarity=0.245  Sum_probs=75.7

Q ss_pred             CCCCCCCc----ccceeeecCCCCCCC--CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccccc--------
Q psy810           92 PSYEGADL----FRGLQMHSHDYRVPD--PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQ--------  157 (227)
Q Consensus        92 p~~~g~~~----~~~~~~~~~~~~~~~--~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~--------  157 (227)
                      +.+||.++    |.++.++||..||..  -|++|.|+|||||++|+|.|.+|++.+++|||++|++ .+...        
T Consensus         2 l~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~-~~ra~~~~~~~l~   80 (130)
T d1vdca2           2 LSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD-AFRASKIMQQRAL   80 (130)
T ss_dssp             CCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS-SCCSCHHHHHHHH
T ss_pred             CCCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc-ccccchhhhhccc
Confidence            36777665    788999999999964  7899999999999999999999999999999999964 33321        


Q ss_pred             CCCceEE--cCCccEEeCCc-------eEEc---CCC--EEeccEEEEcc
Q psy810          158 IGDSVVQ--KPDIKRLLQDS-------VVFQ---DDT--SHPFDSIIYCT  193 (227)
Q Consensus       158 ~~~~i~~--~~~i~~~~~~~-------v~~~---~g~--~i~~D~vi~at  193 (227)
                      -..+|.+  ++.+.++.+++       +.+.   +|+  ++++|.|++++
T Consensus        81 ~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          81 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             cCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            1234544  44577775431       3443   343  58999999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=1.2e-12  Score=94.53  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCC-------
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQD-------  174 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~-------  174 (227)
                      .+++++|||||++|+|+|..|++.|.+||++++.+..+...++.               ++..+..+.+++..       
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~  113 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVT  113 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEE
Confidence            47899999999999999999999999999999976655443432               34456678877532       


Q ss_pred             ceEEcCCCEEeccEEEEccc
Q psy810          175 SVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       175 ~v~~~~g~~i~~D~vi~atG  194 (227)
                      .+.++||+++++|.||+|+|
T Consensus       114 ~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         114 AVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EEEETTSCEEECSEEEECCC
T ss_pred             EEECCCCCEEECCEEEEeeC
Confidence            27789999999999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.33  E-value=2.1e-12  Score=91.00  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=61.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc---cCeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--C--
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV---AKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--D--  174 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~---~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~--  174 (227)
                      .+++++|||||++|+|+|..+.++   +.+||++.+.+..++. ++.               ++..++.++++..  +  
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            368999999999999999887765   7899999996554432 321               5556778888863  2  


Q ss_pred             -ceEEcCCCEEeccEEEEccc
Q psy810          175 -SVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       175 -~v~~~~g~~i~~D~vi~atG  194 (227)
                       .+.+++|+++++|.||+|+|
T Consensus        96 ~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          96 RHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             EEEEETTSCEEEESEEEECSC
T ss_pred             EEEEECCCCEEEcCEEEEecC
Confidence             27889999999999999999

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.31  E-value=5.3e-12  Score=89.74  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCCc---eEE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQDS---VVF  178 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~~---v~~  178 (227)
                      .+++++|||||++|+|+|..|+++|.+||++++.+..+...++.               ++..++.+.++.+++   ..+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~  108 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVV  108 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEE
Confidence            46899999999999999999999999999999966554433331               445577889997653   557


Q ss_pred             cCCCEEeccEEEEcc
Q psy810          179 QDDTSHPFDSIIYCT  193 (227)
Q Consensus       179 ~~g~~i~~D~vi~at  193 (227)
                      .||++++||.||+|+
T Consensus       109 ~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2         109 TDKNAYDADLVVVAV  123 (123)
T ss_dssp             ESSCEEECSEEEECS
T ss_pred             eCCCEEECCEEEEEC
Confidence            899999999999985

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.8e-12  Score=92.90  Aligned_cols=77  Identities=13%  Similarity=0.211  Sum_probs=62.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHh----ccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeCC----
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK----VAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQD----  174 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~----~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~~----  174 (227)
                      +++++|||||++|+|+|..|.+    .+.+||++++.+..+...++.               ++..++.|.+++.+    
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~  116 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKL  116 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEE
Confidence            6899999999999999999964    588999999966555444442               44456778888653    


Q ss_pred             ceEEcCCCEEeccEEEEccc
Q psy810          175 SVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       175 ~v~~~~g~~i~~D~vi~atG  194 (227)
                      .+++++|+++++|.||+|+|
T Consensus       117 ~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2         117 LIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             EEEETTSCEEEESEEEECCC
T ss_pred             EEEECCCCEEECCEEEEeec
Confidence            38889999999999999999

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=2.1e-12  Score=90.77  Aligned_cols=89  Identities=12%  Similarity=0.201  Sum_probs=64.2

Q ss_pred             eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCc
Q psy810          104 QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDI  168 (227)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i  168 (227)
                      .+.+.+..+... .+++++|||||++|+|+|..|+++|.+||++++.+..+.. ++.               ++..++.|
T Consensus         8 ~~~s~~~l~~~~-~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V   85 (115)
T d1lvla2           8 VISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSV   85 (115)
T ss_dssp             EECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred             EECChHHhCccc-CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEE
Confidence            344444444444 3689999999999999999999999999999996654432 321               33445678


Q ss_pred             cEEeCCceEEc--CC--CEEeccEEEEccc
Q psy810          169 KRLLQDSVVFQ--DD--TSHPFDSIIYCTG  194 (227)
Q Consensus       169 ~~~~~~~v~~~--~g--~~i~~D~vi~atG  194 (227)
                      ++++++.....  +|  .++++|.||+|+|
T Consensus        86 ~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          86 EGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            88877654432  22  4699999999998

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3e-12  Score=95.07  Aligned_cols=53  Identities=23%  Similarity=0.328  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCe
Q psy810           89 PNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKN  143 (227)
Q Consensus        89 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~  143 (227)
                      |+.|++||.+.  ..++++.++.......+++|+|||||++|+|+|..+.+.|.+
T Consensus         2 Pr~p~IpG~d~--~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2           2 PRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             ECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCCCCCC--CCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            78899999875  235676677666667799999999999999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.28  E-value=5.9e-12  Score=88.67  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=59.6

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcc---CeEEEEeecCccccccCCC---------------ceEEcCCccEEeC--Cc-
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVA---KNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ--DS-  175 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~--~~-  175 (227)
                      .+++++|||||++|+|+|..+.+++   .+||++++++..++ .++.               ++..+..+++++.  ++ 
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~   97 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILTKENPAKVELNADGS   97 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence            4689999999999999998888764   57999999665443 2331               4556778888863  22 


Q ss_pred             --eEEcCCCEEeccEEEEcc
Q psy810          176 --VVFQDDTSHPFDSIIYCT  193 (227)
Q Consensus       176 --v~~~~g~~i~~D~vi~at  193 (227)
                        +++++|++++||.||+|+
T Consensus        98 ~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          98 KSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             EEEEETTSCEEEESEEEECS
T ss_pred             EEEEECCCcEEEeCEEEEeC
Confidence              888999999999999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.27  E-value=4.5e-12  Score=89.58  Aligned_cols=89  Identities=15%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCc
Q psy810          104 QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDI  168 (227)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i  168 (227)
                      ++.+.+...... .+++++|||||++|+|+|..++++|.+||++.+.+..+. .++             .  ++..+..+
T Consensus         9 v~~s~~~l~l~~-~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-~~d~ei~~~l~~~l~~~Gv~i~~~~~v   86 (119)
T d3lada2           9 IVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARV   86 (119)
T ss_dssp             EEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred             EEchhHhhCccc-CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-cccchhHHHHHHHHHhcCceeecCcEE
Confidence            455555444444 468999999999999999999999999999999655433 232             1  44556778


Q ss_pred             cEEeCC--c--eEEcCC---CEEeccEEEEccc
Q psy810          169 KRLLQD--S--VVFQDD---TSHPFDSIIYCTG  194 (227)
Q Consensus       169 ~~~~~~--~--v~~~~g---~~i~~D~vi~atG  194 (227)
                      ++++.+  +  +++.++   .++.+|.||+|+|
T Consensus        87 ~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          87 TGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            888643  3  555554   3689999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.24  E-value=4.9e-12  Score=89.05  Aligned_cols=95  Identities=13%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             CCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC-----------
Q psy810           92 PSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD-----------  160 (227)
Q Consensus        92 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~-----------  160 (227)
                      |.+|+.+    +++.+.+...... .+++++|||||++|+|+|..+.++|.+||+++|++..+.. ++.           
T Consensus         1 P~~~~~~----~i~~s~~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~   74 (117)
T d1ebda2           1 PNFKFSN----RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLK   74 (117)
T ss_dssp             TTBCCCS----SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             CcCCCCC----CEEChhHhhChhh-cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHH
Confidence            4566543    3455554445544 3689999999999999999999999999999996654432 321           


Q ss_pred             ----ceEEcCCccEEeC--Cc--eEEc-CC--CEEeccEEEEc
Q psy810          161 ----SVVQKPDIKRLLQ--DS--VVFQ-DD--TSHPFDSIIYC  192 (227)
Q Consensus       161 ----~i~~~~~i~~~~~--~~--v~~~-~g--~~i~~D~vi~a  192 (227)
                          ++..+..+.+++.  ++  +.+. +|  +++++|.||+.
T Consensus        75 ~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          75 KKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence                4555677888854  33  4443 44  35899999973

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.23  E-value=4.4e-12  Score=89.73  Aligned_cols=79  Identities=13%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCC-------------C--ceEEcCCccEEeCC--c--
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIG-------------D--SVVQKPDIKRLLQD--S--  175 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~-------------~--~i~~~~~i~~~~~~--~--  175 (227)
                      ..++++++|||||++|+|+|..|++++.+|+++++++..+. .++             .  ++..++.+.+++.+  +  
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~   97 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRV   97 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBE
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceE
Confidence            34579999999999999999999999999999999654432 232             1  44445677777543  2  


Q ss_pred             --eE---EcCCCEEeccEEEEccc
Q psy810          176 --VV---FQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       176 --v~---~~~g~~i~~D~vi~atG  194 (227)
                        +.   ..+++++++|.||+|+|
T Consensus        98 ~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          98 QAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEEETTEEEEEECSCEEECCC
T ss_pred             EEEEEEeCCCCEEEEcCEEEEEEC
Confidence              21   12445799999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.7e-12  Score=88.59  Aligned_cols=96  Identities=15%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC------------
Q psy810           93 SYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD------------  160 (227)
Q Consensus        93 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~------------  160 (227)
                      .+||.+.    .+.+.+..+... .+|+++|||||++|+|+|..++++|.+||+++|++..++. ++.            
T Consensus         2 ~IPG~e~----~~ts~~~~~l~~-~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~   75 (125)
T d3grsa2           2 QIPGASL----GITSDGFFQLEE-LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELEN   75 (125)
T ss_dssp             TSTTGGG----SBCHHHHTTCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHH
T ss_pred             CCCCccc----cCCHHHHhChhh-cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHH
Confidence            4677543    233333333333 3689999999999999999999999999999996654432 321            


Q ss_pred             ---ceEEcCCccEEeC--CceE-----EcCCC------EEeccEEEEccc
Q psy810          161 ---SVVQKPDIKRLLQ--DSVV-----FQDDT------SHPFDSIIYCTG  194 (227)
Q Consensus       161 ---~i~~~~~i~~~~~--~~v~-----~~~g~------~i~~D~vi~atG  194 (227)
                         ++..++.++++..  +++.     ..+|.      .+++|.||+|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          76 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence               3344566777743  3322     12332      357999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.18  E-value=2e-11  Score=86.72  Aligned_cols=88  Identities=9%  Similarity=0.116  Sum_probs=61.9

Q ss_pred             eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCc
Q psy810          104 QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDI  168 (227)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i  168 (227)
                      ++.+.+..+... .+++++|||||++|+|+|..+.++|.+||+++|++..+.. +..               ++..++.+
T Consensus        12 v~ts~~~l~l~~-~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v   89 (123)
T d1dxla2          12 IVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKV   89 (123)
T ss_dssp             EECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred             EEeHHHhhCccc-cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCce
Confidence            344444444444 4789999999999999999999999999999996654432 221               45556778


Q ss_pred             cEEeCC--c--eEE--c-CCC--EEeccEEEEcc
Q psy810          169 KRLLQD--S--VVF--Q-DDT--SHPFDSIIYCT  193 (227)
Q Consensus       169 ~~~~~~--~--v~~--~-~g~--~i~~D~vi~at  193 (227)
                      .+++.+  +  +.+  . +|+  .+++|.|++|.
T Consensus        90 ~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          90 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             EEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            888653  3  333  2 333  48999999873

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=2.6e-11  Score=85.92  Aligned_cols=87  Identities=9%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             eeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCc
Q psy810          104 QMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDI  168 (227)
Q Consensus       104 ~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i  168 (227)
                      .+.+.+..+... .+++++|||+|++|+|+|..|+++|.+||++.+++..++. ++.               ++..++.+
T Consensus        10 v~ts~~~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v   87 (122)
T d1v59a2          10 IVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKV   87 (122)
T ss_dssp             EECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred             EEehHHhhCccc-CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEE
Confidence            344444444444 3689999999999999999999999999999996654432 321               44456667


Q ss_pred             cEEeC--Cc----eEEcCC-----CEEeccEEEEc
Q psy810          169 KRLLQ--DS----VVFQDD-----TSHPFDSIIYC  192 (227)
Q Consensus       169 ~~~~~--~~----v~~~~g-----~~i~~D~vi~a  192 (227)
                      .+++.  ++    +++.++     .++++|.||+|
T Consensus        88 ~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          88 ISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            77753  22    344443     25899999986

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.10  E-value=7.4e-11  Score=88.93  Aligned_cols=84  Identities=13%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcccc--------cc---------------CCCce--EEcCCccEEeC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK--------HQ---------------IGDSV--VQKPDIKRLLQ  173 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~--------~~---------------~~~~i--~~~~~i~~~~~  173 (227)
                      .+|+|||||++|+|+|..|++.+.+++++.+.+....        ..               ...++  ..+..+.++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            4699999999999999999999877766654322110        00               01122  33456777755


Q ss_pred             C--ceEEcCCCEEeccEEEEcccccccccccccc
Q psy810          174 D--SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFL  205 (227)
Q Consensus       174 ~--~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l  205 (227)
                      +  .+++.+|+++++|.+|+|+| ..|++  .++
T Consensus        84 ~~~~~~~~~g~~~~~D~vi~a~G-~~p~~--~~~  114 (183)
T d1d7ya1          84 QAHTVALSDGRTLPYGTLVLATG-AAPRA--VLA  114 (183)
T ss_dssp             TTTEEEETTSCEEECSEEEECCC-EEECC--EEE
T ss_pred             ccceeEecCCcEeeeeeEEEEEE-EEccc--ccc
Confidence            4  48889999999999999999 99987  544

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.06  E-value=1e-10  Score=87.20  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCccccccC----------------------CCceEEc-CCccEE
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVAFKHQI----------------------GDSVVQK-PDIKRL  171 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~~~~~~----------------------~~~i~~~-~~i~~~  171 (227)
                      .||+|+|||||++|+|+|..|++.+  .+||++++.+..+...+                      ...+... ......
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   80 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSATGI   80 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEEEC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeEee
Confidence            3799999999999999999999986  48999988543221100                      0111111 112222


Q ss_pred             eC--CceEEcCCCEEeccEEEEccccccccccccccCCccc
Q psy810          172 LQ--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSI  210 (227)
Q Consensus       172 ~~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl  210 (227)
                      ..  ..+.+.+++.+++|.+|+||| .++++  +++.....
T Consensus        81 ~~~~~~~~~~~~~~i~~D~li~atG-~~~~~--~~i~~~~~  118 (186)
T d1fcda1          81 DPDKKLVKTAGGAEFGYDRCVVAPG-IELIY--DKIEQRAG  118 (186)
T ss_dssp             CTTTTEEEETTSCEEECSEEEECCC-EEECC--TTSTEEEC
T ss_pred             eeccceeecccceeeccceEEEEec-cccch--hhhhhhhh
Confidence            21  236778899999999999999 99998  87765433

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=2.7e-10  Score=84.26  Aligned_cols=90  Identities=20%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCcccc----------ccCCC----------------ceEEcCCccEEeC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFK----------HQIGD----------------SVVQKPDIKRLLQ  173 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~----------~~~~~----------------~i~~~~~i~~~~~  173 (227)
                      +|+|||||++|+|+|..|++ +.+||++++.+....          ..++.                +++....+..++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            79999999999999999976 569999988532110          00110                2333456777765


Q ss_pred             C-ceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          174 D-SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       174 ~-~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                      + .+.+.++.++++|.+|+|+| ..| .  +++...|++.+.
T Consensus        81 ~~~~~~~~~~~i~~D~li~a~G-~~~-~--~~~~~~gl~~~~  118 (167)
T d1xhca1          81 GRKVVITEKGEVPYDTLVLATG-APN-V--DLARRSGIHTGR  118 (167)
T ss_dssp             TTTEEEESSCEEECSEEEECCC-EEC-C--HHHHHTTCCBSS
T ss_pred             ccccccccccccccceeEEEEE-ecC-C--chhhhcCceeCC
Confidence            4 47788899999999999999 765 4  678888887764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=1.4e-10  Score=82.14  Aligned_cols=76  Identities=13%  Similarity=0.219  Sum_probs=54.4

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccccCCC---------------ceEEcCCccEEeC---C----
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKHQIGD---------------SVVQKPDIKRLLQ---D----  174 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~~~~~---------------~i~~~~~i~~~~~---~----  174 (227)
                      .+++++|||||++|+|+|..++++|.+||++.| ++.++. ++.               ++..+..+.++..   +    
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~-~~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEe-chhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            468999999999999999999999999999987 444432 321               3444556666642   1    


Q ss_pred             -ceEEcCC---C--EEeccEEEEccc
Q psy810          175 -SVVFQDD---T--SHPFDSIIYCTG  194 (227)
Q Consensus       175 -~v~~~~g---~--~i~~D~vi~atG  194 (227)
                       .+++.++   +  .+++|.||+|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence             1444332   2  357999999998

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.94  E-value=1.1e-09  Score=81.89  Aligned_cols=97  Identities=14%  Similarity=0.255  Sum_probs=64.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccccc--------cCC-------------------Cce--EEcCC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH--------QIG-------------------DSV--VQKPD  167 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~--------~~~-------------------~~i--~~~~~  167 (227)
                      .+++|+|||||++|+|+|..|++++.+|+++.+.+.....        .+.                   ...  .....
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ   81 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence            3578999999999999999999999888877664322110        000                   011  11223


Q ss_pred             ccEEeCC--ceEEcCCCEEeccEEEEccccccccc-cccccCCccccccc
Q psy810          168 IKRLLQD--SVVFQDDTSHPFDSIIYCTGAYKYSY-KLTFLATFSISMAM  214 (227)
Q Consensus       168 i~~~~~~--~v~~~~g~~i~~D~vi~atG~~~~~~-~~~~l~~~gl~~~~  214 (227)
                      +..+..+  .+.+.++.++++|.+++++| .+|++ +..+++..++..+.
T Consensus        82 ~~~~~~~~~~v~~~~~~~i~~d~~i~~~G-~~~~~~~~~~~~~~~~~~~~  130 (185)
T d1q1ra1          82 VTAINRDRQQVILSDGRALDYDRLVLATG-GRPLIPNCELASAAGLQVDN  130 (185)
T ss_dssp             EEEEETTTTEEEETTSCEEECSEEEECCC-EEEEEECCHHHHHTTCCBSS
T ss_pred             eeeecccccEEEeeceeEEEeeeeeeeee-cccCCCCchhHHhCCccccC
Confidence            3344333  37788899999999999999 88765 22455666665543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.82  E-value=1.4e-08  Score=77.02  Aligned_cols=79  Identities=13%  Similarity=0.241  Sum_probs=54.4

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecCcc-c---------cccCC---------------C--ceEEcCCccE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISVA-F---------KHQIG---------------D--SVVQKPDIKR  170 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~~-~---------~~~~~---------------~--~i~~~~~i~~  170 (227)
                      +|+|||||++|+|+|..|++.  ..+|++++|.+.. +         ...+.               .  ++..+..|.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            699999999999999999988  4579999885321 0         00010               1  2344567888


Q ss_pred             EeCC--ceEE---cCCC--EEeccEEEEcccccccc
Q psy810          171 LLQD--SVVF---QDDT--SHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       171 ~~~~--~v~~---~~g~--~i~~D~vi~atG~~~~~  199 (227)
                      ++.+  ++++   .+|+  .+++|.+|+|+| ..++
T Consensus        82 i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G-~~~~  116 (198)
T d1nhpa1          82 IQPKEHQVTVKDLVSGEERVENYDKLIISPG-AVPF  116 (198)
T ss_dssp             EETTTTEEEEEETTTCCEEEEECSEEEECCC-EEEC
T ss_pred             EeeccccceeeecccccccccccceeeEeec-ceee
Confidence            8754  3554   3454  378999999998 7653

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-08  Score=78.24  Aligned_cols=94  Identities=15%  Similarity=0.206  Sum_probs=65.7

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecCcc------cccc--------------------------C------
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHISVA------FKHQ--------------------------I------  158 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~~~------~~~~--------------------------~------  158 (227)
                      .+++|||+|++|+++|..|++.+  .+|+++.+.+..      ++..                          +      
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            46899999999999999998874  469999763210      1000                          0      


Q ss_pred             ----------CC--ceEEcCCccEEeC--CceEEcCCCEEeccEEEEccccccccccccccCCccccccc
Q psy810          159 ----------GD--SVVQKPDIKRLLQ--DSVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMAM  214 (227)
Q Consensus       159 ----------~~--~i~~~~~i~~~~~--~~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~~  214 (227)
                                ..  ++...+.|.+++.  ..|+++||+++++|.+|+|+| ..|+. ..+....|++++.
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG-~~~~~-~~l~~~~gl~~~~  152 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATG-GTEPN-VELAKTGGLEIDS  152 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCC-EEEEC-CTTHHHHTCCBCT
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeee-eecch-hhhhhccchhhhh
Confidence                      01  2233567878854  459999999999999999999 76554 1455667777643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.63  E-value=5.6e-08  Score=70.97  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             CCCCCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          110 YRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       110 ~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      .+......+++|+|||||++|+|+|..+.+.| ++|++++|++
T Consensus        37 ~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          37 CHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             ccCccccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            33444455789999999999999999999885 6799999864

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.44  E-value=1.1e-06  Score=69.13  Aligned_cols=32  Identities=9%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|||+|+.|+++|..++++|.+|+++.+.+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999999999998843

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=3e-07  Score=68.71  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|+|||+|++|+++|..|+++|.+|+|+++.+
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            357999999999999999999999999999999954

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.35  E-value=5.3e-10  Score=87.50  Aligned_cols=80  Identities=8%  Similarity=-0.137  Sum_probs=54.5

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+.||+||+|||+  .+..|.+++.+.......+...........+++++|+|+|++|+|+|..|.+.+.+|||++|+
T Consensus       135 ~~~~~~d~vviAtG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~  212 (233)
T d1djqa3         135 VLQYGADKVIIATGA--SECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKR  212 (233)
T ss_dssp             HHTSCCSEEEECCCE--ECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCC
T ss_pred             hhhhccceeeeccCC--CcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEec
Confidence            345789999999999  555554444322111111111111122235789999999999999999999999999999996


Q ss_pred             Cc
Q psy810          151 SV  152 (227)
Q Consensus       151 ~~  152 (227)
                      +.
T Consensus       213 ~~  214 (233)
T d1djqa3         213 ET  214 (233)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.4e-08  Score=77.94  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=52.2

Q ss_pred             CeeEEEcCEEEEccCCCCCCCCCCCCCCCccc--ceeeec--CCC---CCCCCCCCCeEEEEccCccHHHHHHHHHhccC
Q psy810           70 EITLHYNLLQSLPSSHNSVPNIPSYEGADLFR--GLQMHS--HDY---RVPDPFRDQNVLLVGFGPSGVDIAMDIEKVAK  142 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~--~~~~~~--~~~---~~~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~  142 (227)
                      ++..+.++++++|||+  .|.+|++|+.+...  ...+..  ..+   ........++|+++|+|.+|+|+|..+.+.|.
T Consensus       124 ~~~~~~~~~~iiatG~--~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~  201 (217)
T d1gesa1         124 NGETITADHILIATGG--RPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGR  201 (217)
T ss_dssp             TTEEEEEEEEEECCCE--EECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHH
T ss_pred             CCceeeeeeeeeecCc--cccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHH
Confidence            3468999999999999  88999888765321  111111  111   11122235689999999999999999999998


Q ss_pred             eEE
Q psy810          143 NVF  145 (227)
Q Consensus       143 ~Vt  145 (227)
                      +|+
T Consensus       202 ~v~  204 (217)
T d1gesa1         202 RLS  204 (217)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=3.3e-10  Score=90.08  Aligned_cols=117  Identities=10%  Similarity=0.053  Sum_probs=45.3

Q ss_pred             CeeEEEcCEEEEccCCCCCCC--CCCCCCC--CcccceeeecCCCCCCCCCCCCeEEEEccCccH--HHHHHHHHhccCe
Q psy810           70 EITLHYNLLQSLPSSHNSVPN--IPSYEGA--DLFRGLQMHSHDYRVPDPFRDQNVLLVGFGPSG--VDIAMDIEKVAKN  143 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~--~p~~~g~--~~~~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g--~e~a~~l~~~~~~  143 (227)
                      +.+.+++|+|+||||+  +|.  .+..|+.  +..  .++.+..+...... + +..|+|+|++|  +..+......+..
T Consensus       135 ~~~~i~a~~iiIATGs--~P~~~~~~~~~~~l~~~--~i~ts~~~~~~d~~-~-~t~Vig~gaiGdv~~~~~~~~~~~~~  208 (259)
T d1onfa1         135 NEEILEGRNILIAVGN--KPVGRSPDTENLKLEKL--NVETNNNYIVVDEN-Q-RTSVNNIYAVGDCCMVKKSKEIEDLN  208 (259)
T ss_dssp             -----CBSSEEECCCC--CBCCBCCTTTTSSCTTT--TCCBSSSCEEECTT-C-BCSSSSEEECSTTEEEC---------
T ss_pred             ceEEEeeeeEEEecCC--CCccccccccccccccc--eeeecccccccccC-C-ceeEeeEEEEEEeeehhhhhhhcchh
Confidence            3467999999999999  662  3334443  221  11222222222232 3 44678888877  2222222222233


Q ss_pred             EEEEeecCccccc--cCCCceEEcCCccEEeCCceEEcCCCEEeccEEEEcccccccc
Q psy810          144 VFLSHHISVAFKH--QIGDSVVQKPDIKRLLQDSVVFQDDTSHPFDSIIYCTGAYKYS  199 (227)
Q Consensus       144 Vtli~~~~~~~~~--~~~~~i~~~~~i~~~~~~~v~~~~g~~i~~D~vi~atG~~~~~  199 (227)
                      +..+.+.......  ..+..+..+..+..     |....| ++.+|.|++||| .+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~G-~~~ad~vlvatG-R~PN  259 (259)
T d1onfa1         209 LLKLYNEERYLNKKENVTEDIFYNVQLTP-----VAINAG-RLLADRLFLKKT-RKTN  259 (259)
T ss_dssp             ---------------------CBCCCCHH-----HHHHHH-HHHHHHHHSCTT-CCCC
T ss_pred             hHhhhcCCccccccCCcceEEecCcEEEE-----EEcccc-eeEeceeEeCCC-cCCC
Confidence            3333321111100  01111111112211     222222 356899999999 9987

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.23  E-value=1.3e-06  Score=66.62  Aligned_cols=32  Identities=19%  Similarity=0.319  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -|+|||+|++|+.+|..+++.|.+|+++.+++
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            39999999999999999999999999998753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=4.8e-06  Score=62.30  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=60.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc---cc------------cCCC------------------ceEE
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF---KH------------QIGD------------------SVVQ  164 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~---~~------------~~~~------------------~i~~  164 (227)
                      .++|+|||||++|++.|.++++.+.+|.++.+.....   ..            .++.                  .+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            3689999999999999999999999999998643210   00            0010                  1111


Q ss_pred             -cCCccEEeCCc---eEEcCCCEEeccEEEEccccc-----cccccccccCCcccccccC
Q psy810          165 -KPDIKRLLQDS---VVFQDDTSHPFDSIIYCTGAY-----KYSYKLTFLATFSISMAMS  215 (227)
Q Consensus       165 -~~~i~~~~~~~---v~~~~g~~i~~D~vi~atG~~-----~~~~~~~~l~~~gl~~~~~  215 (227)
                       ...|..++..+   ....+.....+|.+++++| .     .|++  .|+. .+++++.+
T Consensus        85 ~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g-~~~~g~~p~~--~~~~-~~veld~~  140 (192)
T d1vdca1          85 FTETVTKVDFSSKPFKLFTDSKAILADAVILAIG-AVAKGHEPAT--KFLD-GGVELDSD  140 (192)
T ss_dssp             ECCCCCEEECSSSSEEEECSSEEEEEEEEEECCC-EEECCEEESC--GGGT-TSSCBCTT
T ss_pred             eeeeEEecccccCcEEecccceeeeeeeEEEEee-eeecccCchH--HHhc-CceeecCC
Confidence             22344444322   2334455678999999998 5     4676  6665 46888865

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.19  E-value=3.1e-06  Score=65.86  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=31.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999853

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1.6e-06  Score=64.78  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.|+|||||++|++.|..+++.+.+|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            467999999999999999999999999999874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.13  E-value=1.7e-06  Score=70.36  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=29.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc--CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~~  151 (227)
                      |+|+|||+|.+|+-+|..|++.+  .+|+++++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999998765  5899999964

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=6.9e-06  Score=62.85  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHH--------------------hc-cCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIE--------------------KV-AKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~--------------------~~-~~~Vtli~~~~~  152 (227)
                      ...+++|+|||+|++|+++|..+.                    +. .++|+++.|+..
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            456899999999999999998776                    23 568999999753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.02  E-value=7.3e-06  Score=65.82  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=59.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc---c--cc-----------------------------c-------
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA---F--KH-----------------------------Q-------  157 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~---~--~~-----------------------------~-------  157 (227)
                      -.|+|||+|.+|+-+|..|.+.|.+|+++++.+..   +  +.                             .       
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            46999999999999999999999999999885321   0  00                             0       


Q ss_pred             ------------CCCceEEcCCccEEe--CC----ceEEcCCCEEeccEEEEccccc
Q psy810          158 ------------IGDSVVQKPDIKRLL--QD----SVVFQDDTSHPFDSIIYCTGAY  196 (227)
Q Consensus       158 ------------~~~~i~~~~~i~~~~--~~----~v~~~~g~~i~~D~vi~atG~~  196 (227)
                                  +..+|+.++.|.++.  ++    .|.+.++.++.+|.+|+||| +
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG-~  143 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG-Q  143 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC-S
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeec-c
Confidence                        012577788888774  32    28888999999999999999 6

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.98  E-value=1.4e-05  Score=61.65  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecCccccc-----------------cC----C----------------CceE
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAFKH-----------------QI----G----------------DSVV  163 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~~~-----------------~~----~----------------~~i~  163 (227)
                      |+|||||.+|+|.|...++.+.++.|++...+.+..                 ..    +                .++.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL~   84 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPLH   84 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTEE
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCHH
Confidence            899999999999999999999999999763222100                 00    0                1222


Q ss_pred             E-cCCccEE--eCC---ceEEcCCCEEeccEEEEccc
Q psy810          164 Q-KPDIKRL--LQD---SVVFQDDTSHPFDSIIYCTG  194 (227)
Q Consensus       164 ~-~~~i~~~--~~~---~v~~~~g~~i~~D~vi~atG  194 (227)
                      + ...|..+  +++   +|++.+|..+.+..||++||
T Consensus        85 i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTG  121 (230)
T d2cula1          85 LFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVG  121 (230)
T ss_dssp             EEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCT
T ss_pred             HHhccceeeEecccceeeEEeccccEEEEeEEEEccC
Confidence            2 1223333  222   37889999999999999999

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.95  E-value=4.9e-06  Score=64.41  Aligned_cols=31  Identities=32%  Similarity=0.505  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3899999999999999999999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.92  E-value=1.2e-06  Score=67.84  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+++|+|||+|++|+.+|..|++.|.+|+++++.+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            357999999999999999999999999999999854

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.92  E-value=2.5e-05  Score=59.00  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|+.|+.+|..+++.|.+|+++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            4899999999999999999999999999874

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=9.5e-05  Score=54.10  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=56.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc-cccc-----cCCC--------------------ceE--EcCCccEE
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV-AFKH-----QIGD--------------------SVV--QKPDIKRL  171 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~-~~~~-----~~~~--------------------~i~--~~~~i~~~  171 (227)
                      .|+|||||++|+++|..+.+.|.+|++++++.. .+..     .++.                    ...  .......+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            389999999999999999999999999987421 1100     0110                    011  11122222


Q ss_pred             eCC-------ceEEcCCCEEeccEEEEccccccccccccccCCcccccc
Q psy810          172 LQD-------SVVFQDDTSHPFDSIIYCTGAYKYSYKLTFLATFSISMA  213 (227)
Q Consensus       172 ~~~-------~v~~~~g~~i~~D~vi~atG~~~~~~~~~~l~~~gl~~~  213 (227)
                      ...       .....++..+.++.++.++| ..++.  ..+...++...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~--~~~~~~~~~~~  128 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATG-AKLPN--TNWLEGAVERN  128 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCC-EEEES--CGGGTTTSCBC
T ss_pred             cccccccceeeeeeecceeeeccccccccc-ccccc--ccccccccccc
Confidence            211       13345667889999999999 76665  55555554444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.76  E-value=8.4e-06  Score=60.57  Aligned_cols=35  Identities=14%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      .+|+|+|||+|++|+++|..|++.|. +|+|+++++
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            47899999999999999999999986 699999954

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.73  E-value=9.7e-06  Score=65.08  Aligned_cols=55  Identities=13%  Similarity=0.020  Sum_probs=48.1

Q ss_pred             eEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCc
Q psy810           44 EIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADL   99 (227)
Q Consensus        44 ~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~   99 (227)
                      +|+++++|+++. +++..+.|+|.+.++..+++|.||+|||....|.+|.+++.+.
T Consensus       103 ~I~f~t~V~~~~-~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i  157 (298)
T d1w4xa1         103 GITFHTTVTAAA-FDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDI  157 (298)
T ss_dssp             GEECSCCEEEEE-EETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEE
T ss_pred             cccCCcEEEEEE-EecCCCceeeccccccccccceEEEeecccccccCCccccccc
Confidence            689999999987 4445578999999999999999999999988999998888764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.72  E-value=4.3e-05  Score=57.91  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -.++|||+|+.|+++|..++++|.+|+|+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35999999999999999999999999999874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=2.2e-05  Score=61.00  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|+-+|..+++.|.+|+|+++.+
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999853

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=6.6e-05  Score=56.63  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=28.6

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|++|+.+|..+++.|.+|+|+++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            899999999999999999999999999874

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.64  E-value=3.6e-05  Score=61.13  Aligned_cols=31  Identities=16%  Similarity=0.366  Sum_probs=28.4

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      +|+|||+|.+|+-+|.+|++.| ++|+|++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            5999999999999999999998 579999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=3.6e-05  Score=50.65  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=53.3

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc-ccccCCCceEEcCCccEEeCCceEEcCCCE---EeccEEE
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA-FKHQIGDSVVQKPDIKRLLQDSVVFQDDTS---HPFDSII  190 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~-~~~~~~~~i~~~~~i~~~~~~~v~~~~g~~---i~~D~vi  190 (227)
                      ++++|+|+|+|.|-+|.-+|..|.+.|.+|+++..+... ....+..      .+      .+.+..-..   -.+|.||
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE------AV------ERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT------TS------CEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh------cc------ceeecccchhhhccCCEEE
Confidence            578999999999999999999999999999999874321 1111111      11      122221111   2689999


Q ss_pred             EccccccccccccccC
Q psy810          191 YCTGAYKYSYKLTFLA  206 (227)
Q Consensus       191 ~atG~~~~~~~~~~l~  206 (227)
                      +..| ..++.  +++.
T Consensus        70 ~SPG-i~~~~--~~~~   82 (93)
T d2jfga1          70 ASPG-IALAH--PSLS   82 (93)
T ss_dssp             ECTT-SCTTS--HHHH
T ss_pred             ECCC-CCCCC--HHHH
Confidence            9999 98887  6654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.59  E-value=4.4e-05  Score=59.57  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-+|.+|++.|.+|+|+++.
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3999999999999999999999999999874

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.58  E-value=0.00027  Score=53.10  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=28.5

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|++|+..|..+++.|.+|.++++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            899999999999999999999999999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.49  E-value=0.0001  Score=57.61  Aligned_cols=30  Identities=23%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-+|.+|++.|.+|+|+++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            999999999999999999999999999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00031  Score=52.82  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|+.|+++|..+++.|.+|.|+++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            899999999999999999999999999873

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.46  E-value=1.2e-05  Score=65.10  Aligned_cols=106  Identities=16%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecC------CeeEEEcCEEEEccCCCCCCCCCCCCCC-----Ccccce---eee
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANE------EITLHYNLLQSLPSSHNSVPNIPSYEGA-----DLFRGL---QMH  106 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~------~~~~~~~~~vilAtG~~~~p~~p~~~g~-----~~~~~~---~~~  106 (227)
                      ...+|+++++|++|+..+   ++|.|++.      +.....||+||+|||..+.|+.|.+++.     +.|.+.   .++
T Consensus       126 ~~~~I~~~t~V~~v~~~~---~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~  202 (335)
T d2gv8a1         126 LLPFIKLATDVLDIEKKD---GSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLID  202 (335)
T ss_dssp             GGGGEECSEEEEEEEEET---TEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCS
T ss_pred             hhhcccCceEEEEEEecC---CEEEEEEEecCCCCeEEEEEeeEEEEcccccccceecccccCCCCcchhcccCccceec
Confidence            345799999999998644   78988642      2245679999999999888888765332     222211   111


Q ss_pred             cC-----CCCCCC-------CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          107 SH-----DYRVPD-------PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       107 ~~-----~~~~~~-------~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ..     .|.+..       .+.|+.+.+++-+.++++.+..+.-...++.|-.+
T Consensus       203 ~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~~~~~e~Qa~~~a~~~~g~~~Lps~  257 (335)
T d2gv8a1         203 DGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSK  257 (335)
T ss_dssp             SSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCH
T ss_pred             cccceeeeecccccCCCCceEEeeeEEEEecCCchHHHHHHHHHHHcCCccCCCc
Confidence            00     011111       12355555566666777766666555555666554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.42  E-value=5.6e-05  Score=58.80  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5899999999999999999999999999998753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.36  E-value=0.00022  Score=55.37  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++|||+|+.|..+|..+++.|.+|.|+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            899999999999999999999999999874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.00091  Score=50.89  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             eEEEEccCccHHHHHHHHHhcc---CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA---KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~---~~Vtli~~~  150 (227)
                      +|+|||+|+.|+..|...++.+   .+|+++++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            6999999999999999887764   579999873

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.00029  Score=53.27  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=29.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|++|+.+|..+++.|.+|.|+.+++
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00014  Score=52.02  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      +..+|+|+|||||..|.+-|..|.+.|.+||++..
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            45799999999999999999999999999999976

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.28  E-value=0.00012  Score=53.63  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      |+++|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999999999999999999999999543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.0014  Score=49.52  Aligned_cols=31  Identities=23%  Similarity=0.504  Sum_probs=28.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|+.|+.+|..+++.|.+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3899999999999999999999999999853

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.21  E-value=0.00012  Score=57.81  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4689999999999999999999999999999874

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.19  E-value=0.00024  Score=54.33  Aligned_cols=38  Identities=16%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHh---------------------ccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEK---------------------VAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~---------------------~~~~Vtli~~~~~  152 (227)
                      +..+++|+|||+|++|+++|..+.+                     ..++|+++.|++.
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3468999999999999999999987                     2478999999753

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.08  E-value=0.00063  Score=52.41  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      -+|+|||+|.+|+=+|..|++.| .+|+|+++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            36999999999999999999999 5999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.00  E-value=0.00027  Score=53.86  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .++|+|||+|.+|+-+|..|++.|.+|+|++|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            468999999999999999999999999999984

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.93  E-value=0.00027  Score=53.39  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-+|..|++.| ++|+|+++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            5999999999999999999999 5799998853

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=8.8e-06  Score=60.45  Aligned_cols=66  Identities=14%  Similarity=0.063  Sum_probs=47.0

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCe
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQN  120 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  120 (227)
                      .++++++|+.|..               +  ....||.||+|||+  .|+.+++||.+                  .+++
T Consensus       108 ~gV~i~l~~~Vt~---------------~--~~~~~d~vilAtG~--~~~~~~~pg~~------------------~g~~  150 (179)
T d1ps9a3         108 TGVTLKLNHTVTA---------------D--QLQAFDETILASGI--PNRALAQPLID------------------SGKT  150 (179)
T ss_dssp             HTCEEEESCCCCS---------------S--SSCCSSEEEECCCE--ECCTTHHHHHT------------------TTCC
T ss_pred             CCeEEEeCCEEcc---------------c--ccccceeEEEeecC--CCcccccchhc------------------cCCE
Confidence            4668888887642               1  13578999999999  77777766643                  3788


Q ss_pred             EEEEccCccHHHH-HHHHHhccCe
Q psy810          121 VLLVGFGPSGVDI-AMDIEKVAKN  143 (227)
Q Consensus       121 v~VvGgG~~g~e~-a~~l~~~~~~  143 (227)
                      ++|+|+|++++++ +......|.+
T Consensus       151 v~vigggd~a~~~~~~~Av~~G~~  174 (179)
T d1ps9a3         151 VHLIGGCDVAMELDARRAIAQGTR  174 (179)
T ss_dssp             EEECGGGTCCSSCCHHHHHHHHHH
T ss_pred             EEEECCcHhhhhccchhhhhccCE
Confidence            9999999999886 4444444443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.90  E-value=0.00047  Score=46.65  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.++|+|+|||+|.+|..-|..|...|.+|+++...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            456899999999999999999999999999999763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.85  E-value=0.0005  Score=55.07  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            4789999999999999999999999999999854

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00046  Score=54.08  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4579999999999999999999999999999844

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.78  E-value=0.0004  Score=53.63  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|||+|.+|+-+|..|++.|.+|+|++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5999999999999999999999999999885

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00024  Score=53.72  Aligned_cols=50  Identities=2%  Similarity=-0.144  Sum_probs=39.8

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEG   96 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g   96 (227)
                      ..+++++++++|.+|+.     +..+|.+++|+++.||.||+|||+  .|..+++++
T Consensus        95 ~~gI~~~~g~~V~~id~-----~~~~V~l~dG~~i~~d~lViAtG~--~~~~~~l~~  144 (213)
T d1m6ia1          95 NGGVAVLTGKKVVQLDV-----RDNMVKLNDGSQITYEKCLIATGG--TEPNVELAK  144 (213)
T ss_dssp             TCEEEEEETCCEEEEEG-----GGTEEEETTSCEEEEEEEEECCCE--EEECCTTHH
T ss_pred             HCCeEEEeCCEEEEeec-----cCceeeeccceeeccceEEEeeee--ecchhhhhh
Confidence            34689999999999975     334788889999999999999998  555555544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00064  Score=50.85  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=29.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|+|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            38999999999999999999999999999953

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.62  E-value=0.0018  Score=43.85  Aligned_cols=42  Identities=14%  Similarity=-0.042  Sum_probs=35.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      .+++++++++|.+|++.++  +...+.++++..+.||.|++|+|
T Consensus        75 ~GI~v~~~~~v~~i~~~~~--g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          75 NGINVRTHENPAKVTKNAD--GTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TTEEEEETCCEEEEEECTT--SCEEEEETTSCEEEESEEEECSC
T ss_pred             CcEEEEcCCEEEEEEECCC--CEEEEEECCCCEEEcCEEEEecC
Confidence            4679999999999986443  55678888889999999999999

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.60  E-value=0.0006  Score=51.53  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc-------CeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA-------KNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~-------~~Vtli~~~~  151 (227)
                      +.+|+|||+|++|+.+|..|.+.|       .+||++++.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            468999999999999999999986       4799999854

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.0018  Score=43.79  Aligned_cols=42  Identities=7%  Similarity=-0.165  Sum_probs=35.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      .+++++++++|..+.+.++  ....+.+++++.+.+|.|++|||
T Consensus        75 ~GV~~~~~~~v~~i~~~~~--~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          75 EGPQLHTNAIPKAVVKNTD--GSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HSCEEECSCCEEEEEECTT--SCEEEEETTSCEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCC--cEEEEEECCCCEEEcCEEEEecC
Confidence            4679999999999986443  55778888888999999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.002  Score=44.89  Aligned_cols=42  Identities=5%  Similarity=-0.213  Sum_probs=36.3

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      ..+++++++++|.+++..+   +...+.+++|+.+.+|.||+|+|
T Consensus        95 ~~GV~~~~~~~V~~i~~~~---~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          95 REGVKVMPNAIVQSVGVSS---GKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             TTTCEEECSCCEEEEEEET---TEEEEEETTSCEEEESEEEECCC
T ss_pred             hCCcEEEeCCEEEEEEecC---CEEEEEECCCCEEECCEEEEeec
Confidence            3567999999999998643   67788999999999999999999

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.50  E-value=0.0014  Score=47.14  Aligned_cols=35  Identities=14%  Similarity=0.085  Sum_probs=32.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .|+|+|+|+|.+|.-+|..|.+.|.+|+++.|...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            58999999999999999999999999999999543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.49  E-value=0.00053  Score=50.90  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|+|+|..|.-+|..|++.+.+|+|+.|..
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999999854

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.47  E-value=0.0011  Score=50.02  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      +|+|||+|++|+.+|..|++.  +.+||++++.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            799999999999999999876  66999998854

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.0015  Score=50.21  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCC-cEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTK-CLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~-~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .+++++++++|.++.+.++... .+.+.++. ..+++|+||+|||..+.|
T Consensus       122 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~-~~~~a~~VIiAtGG~S~p  170 (253)
T d2gqfa1         122 YGAKILLRSEVSQVERIQNDEKVRFVLQVNS-TQWQCKNLIVATGGLSMP  170 (253)
T ss_dssp             HTCEEECSCCEEEEEECCSCSSCCEEEEETT-EEEEESEEEECCCCSSCG
T ss_pred             cCCCeecCceEEEEEeecCCceeEEEEecCC-EEEEeCEEEEcCCccccc
Confidence            3679999999999987654322 35555555 579999999999995433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.41  E-value=0.0016  Score=49.57  Aligned_cols=47  Identities=13%  Similarity=0.003  Sum_probs=36.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVP   89 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p   89 (227)
                      .+++++++++|.+|...+.  ..+.+.+++++.+++|+||+|||..+.|
T Consensus       123 ~gv~i~~~~~v~~i~~~~~--~~~~v~~~~g~~i~a~~vI~AtGg~S~p  169 (251)
T d2i0za1         123 LGVKIRTNTPVETIEYENG--QTKAVILQTGEVLETNHVVIAVGGKSVP  169 (251)
T ss_dssp             TTCEEECSCCEEEEEEETT--EEEEEEETTCCEEECSCEEECCCCSSSG
T ss_pred             cCCcccCCcEEEEEEEECC--EEEEEEeCCCCeEecCeEEEccCCcccc
Confidence            4678999999999986442  3445777888899999999999995533

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.33  E-value=0.0044  Score=46.87  Aligned_cols=31  Identities=16%  Similarity=0.387  Sum_probs=26.9

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~  150 (227)
                      -|+|||+|+.|..+|..+++.+ +.|.++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            3899999999999999999986 569898763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0016  Score=51.45  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|||+|.+|+-+|..|++.|.+|+|+++++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            48999999999999999999999999999853

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.16  E-value=0.0037  Score=43.31  Aligned_cols=45  Identities=16%  Similarity=-0.015  Sum_probs=36.1

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      ..+++++++++|..++...+......+.+++|+.+.+|.||+|+|
T Consensus        89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            346799999999999875543333457788888999999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0019  Score=51.04  Aligned_cols=30  Identities=30%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-+|..|++.|.+|+|++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            899999999999999999999999999874

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.09  E-value=0.0023  Score=48.25  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -|+|||+|+.|+.+|..+++.|.+|+|+++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38999999999999999999999999998743

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.07  E-value=0.002  Score=50.19  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=30.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0049  Score=43.76  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=30.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|+|+|+|.+|.-+|..|++.|.+|+++.|...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999999543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0061  Score=44.99  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      =|+|+|||+|.+|..+|..+++.|.+|+++.+..
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            3799999999999999999999999999998854

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.47  E-value=0.01  Score=40.05  Aligned_cols=42  Identities=12%  Similarity=-0.018  Sum_probs=31.4

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEe--c-CCeeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFA--N-EEITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~--~-~~~~~~~~~~vilAtG   84 (227)
                      ..+++++++++|++++..+   +...++  . ++++++.+|.|++|+|
T Consensus        75 ~~Gv~i~~~~~v~~i~~~~---~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          75 KQGLKILLGARVTGTEVKN---KQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HTTEEEEETCEEEEEEECS---SCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             hcCceeecCcEEEEEEEeC---CEEEEEEEECCCCEEEECCEEEEeeC
Confidence            3467899999999998644   334443  2 3346899999999998

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.46  E-value=0.0053  Score=47.61  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             CCeEEEEccCccHHHHHHHHHh-ccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEK-VAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~-~~~~Vtli~~~~  151 (227)
                      +..|+|||+|.+|+.+|..|++ .|.+|+++++++
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4569999999999999999987 499999999854

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.44  E-value=0.012  Score=39.61  Aligned_cols=41  Identities=15%  Similarity=-0.130  Sum_probs=34.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEcc
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPS   83 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAt   83 (227)
                      .++++++++++.++++..+  +...+.+++|+++.+|.|++|.
T Consensus        77 ~GV~v~~~~~v~~ie~~~~--~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          77 NGIQILTKENPAKVELNAD--GSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TTCEEEESCCEEEEEECTT--SCEEEEETTSCEEEESEEEECS
T ss_pred             cCcEEEcCCEEEEEEEcCC--CeEEEEECCCcEEEeCEEEEeC
Confidence            4689999999999986443  5678889999999999999984

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.40  E-value=0.0076  Score=46.43  Aligned_cols=43  Identities=0%  Similarity=-0.167  Sum_probs=36.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      .+++++++++|.++...+   +++.|.++++ .+.+|+||+|+|.|.
T Consensus       163 ~Gv~i~~~~~V~~i~~~~---~~v~V~t~~g-~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         163 RGAKVLTHTRVEDFDISP---DSVKIETANG-SYTADKLIVSMGAWN  205 (281)
T ss_dssp             TTCEEECSCCEEEEEECS---SCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             ccccccCCcEEEEEEEEC---CEEEEEECCc-EEEcCEEEECCCCcc
Confidence            467899999999998644   6789999998 599999999999864

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.15  E-value=0.0073  Score=47.28  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|.+|+-+|..+++.|.+|+|+++.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4999999999999999999999999999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0056  Score=43.95  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+.||+++|+|-|..|-.+|..++.+|.+|+++...
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            356999999999999999999999999999999883

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.06  E-value=0.0063  Score=44.61  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|+|||+|.+|..+|..+++.|.+|+++.+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999998854

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.99  E-value=0.0066  Score=46.53  Aligned_cols=44  Identities=14%  Similarity=-0.056  Sum_probs=36.6

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ..+++++.+++|..|++.   .+.+.|.++++ ++.||+||+|+|.|.
T Consensus       163 ~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         163 MLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVASGVWS  206 (276)
T ss_dssp             HTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred             HcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEECCCccH
Confidence            346789999999998853   36789999988 699999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.88  E-value=0.015  Score=45.18  Aligned_cols=45  Identities=4%  Similarity=-0.113  Sum_probs=36.3

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ..+++++.+++|+++...+.  ..+.|.++++ .++||+||+|+|.|.
T Consensus       160 ~~gv~i~~~~~V~~i~~~~~--~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIEQSGG--RVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HTTCEEECSCCEEEEEEETT--EEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             cccccccCCceEEEEEEeCC--EEEEEeccce-eEECCEEEEecchhH
Confidence            34788999999999987553  3455888888 699999999999864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.029  Score=40.20  Aligned_cols=37  Identities=14%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.-+|..|.+.+..||+.+...
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            56799999999887 88899999999999999998744

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=94.69  E-value=0.012  Score=47.14  Aligned_cols=31  Identities=10%  Similarity=0.164  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|..|.-+|..|++.|.+|.|++++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            3899999999999999999999999999985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.67  E-value=0.0086  Score=41.05  Aligned_cols=36  Identities=14%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      |+++|+|.|..|..+|..|.+.|.+|+++......+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~   36 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKV   36 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHH
Confidence            679999999999999999999999999998854443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=94.65  E-value=0.012  Score=46.47  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|.+|+-+|..+++.|.+|.|+++.
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4999999999999999999999999999874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=94.63  E-value=0.012  Score=47.29  Aligned_cols=31  Identities=16%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|..|+-+|..|++.|.+|+|++++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3999999999999999999999999999985

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.61  E-value=0.014  Score=42.27  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=29.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|+|+|+|+.|.-+|..|++.+.+|+|+.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            6899999999999999999999999999874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.045  Score=39.29  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++.||+++|||.+. .|.=+|..|.+.+..|++++...
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            56899999999877 78899999999999999998854

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.60  E-value=0.012  Score=42.05  Aligned_cols=35  Identities=17%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.||+++|+|=|+.|--+|..++.+|.+|++.+..
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence            46999999999999999999999999999999883

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.59  E-value=0.0061  Score=44.09  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+++|+|+|+|-+|--++..|.+.+.+|+++.|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4568999999999999888888888888999999954

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=94.51  E-value=0.013  Score=46.25  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=28.4

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      |+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            999999999999999999999999999874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.48  E-value=0.00071  Score=51.53  Aligned_cols=23  Identities=13%  Similarity=0.086  Sum_probs=18.1

Q ss_pred             CeeEEEcCEEEEccCCCCCCCCCCC
Q psy810           70 EITLHYNLLQSLPSSHNSVPNIPSY   94 (227)
Q Consensus        70 ~~~~~~~~~vilAtG~~~~p~~p~~   94 (227)
                      +...+++|.+++|||.  .|..++.
T Consensus       138 ~~~~i~ad~viiAtG~--~p~~~~~  160 (233)
T d1xdia1         138 STSEHEADVVLVATGA--SPRILPS  160 (233)
T ss_dssp             CEEEEEESEEEECCCE--EECCCGG
T ss_pred             ceeeeecceeeeecCc--ccccccc
Confidence            3467999999999999  7765543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=94.34  E-value=0.016  Score=46.08  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|..|+=+|..|++.|.+|.|++++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            4899999999999999999999999999985

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.27  E-value=0.012  Score=42.56  Aligned_cols=39  Identities=8%  Similarity=0.095  Sum_probs=33.3

Q ss_pred             CCCCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeec
Q psy810          112 VPDPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       112 ~~~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ...+..||+++|||.+. .|.=+|..|.+.+..||+.+..
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            45578899999999776 5899999999999999988763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.26  E-value=0.017  Score=39.53  Aligned_cols=35  Identities=14%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      +|+|+|+|..|..+|..|.+.|.+|+++...++.+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~   36 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDIC   36 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhh
Confidence            68999999999999999999999999998854433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.013  Score=46.10  Aligned_cols=34  Identities=29%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      +..|+|||+|++|+.+|..|++.  +.+|+++++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            45799999999999999999965  88999999853

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.23  E-value=0.016  Score=45.64  Aligned_cols=31  Identities=32%  Similarity=0.566  Sum_probs=29.1

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.|.+|.|+++.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4999999999999999999999999999874

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.22  E-value=0.0058  Score=44.83  Aligned_cols=42  Identities=5%  Similarity=-0.042  Sum_probs=30.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe---cCCeeEEEcCEEEEccCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA---NEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~---~~~~~~~~~~~vilAtG~   85 (227)
                      .+++++++++|.+++..+   +..++.   +++...+.+|.+|+|+|+
T Consensus        69 ~gi~v~~~~~V~~i~~~~---~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          69 RGVNVFSNTEITAIQPKE---HQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             TTCEEEETEEEEEEETTT---TEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             CCcEEEEeeceeeEeecc---ccceeeecccccccccccceeeEeecc
Confidence            467899999999987522   333332   334567899999999998

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.21  E-value=0.016  Score=41.62  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=36.2

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNI   91 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~   91 (227)
                      ..+++++.+.++..+..     ....+.+.+++++.||.|++|+|.  .|+.
T Consensus        67 ~~~i~~~~~~~v~~i~~-----~~~~~~~~~g~~~~~D~vi~a~G~--~p~~  111 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDP-----QAHTVALSDGRTLPYGTLVLATGA--APRA  111 (183)
T ss_dssp             STTCEEEETCCEEEEET-----TTTEEEETTSCEEECSEEEECCCE--EECC
T ss_pred             cCCeEEEEecccccccc-----ccceeEecCCcEeeeeeEEEEEEE--Eccc
Confidence            44678889999998774     445677788889999999999998  6654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.19  E-value=0.017  Score=45.58  Aligned_cols=32  Identities=34%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             eEEEEccCccHHHHHHHHH-----hccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIE-----KVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~-----~~~~~Vtli~~~~  151 (227)
                      -|+|||||.+|+=+|..|+     +.|.+|+|+++++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4999999999999999996     3588999999854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.00  E-value=0.045  Score=36.88  Aligned_cols=37  Identities=8%  Similarity=-0.036  Sum_probs=29.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      .+++++++++|..+..     +  .+.+.+++.+.+|.||+|+|
T Consensus        85 ~GV~i~~~~~v~~~~~-----~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          85 QGVDLRFERSVTGSVD-----G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TTCEEEESCCEEEEET-----T--EEEETTSCEEECSEEEECSC
T ss_pred             CCcEEEeCCEEEEEeC-----C--EEEECCCCEEECCEEEEeeC
Confidence            4678999999987652     2  35667788999999999998

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.94  E-value=0.02  Score=46.58  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHh------ccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEK------VAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~------~~~~Vtli~~~~  151 (227)
                      -|+|||||++|.-+|..|++      .|-+|.|++++.
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999997      588999999853

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.048  Score=39.89  Aligned_cols=37  Identities=14%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             CCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          118 DQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       118 ~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      -|+|+|.| .|.+|-.++..|.+.|.+|+++.|....+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            47899999 59999999999999999999999965544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.88  E-value=0.026  Score=40.43  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=33.4

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .++.+|+|+|+|..|.+.+....++|.+|+++..+...
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~   67 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVER   67 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHH
Confidence            35679999999999999999999999999999886443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.88  E-value=0.0046  Score=46.30  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccC------eEEEEee
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAK------NVFLSHH  149 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~------~Vtli~~  149 (227)
                      +|+|||+|.+|+-+|..|++.|.      +++++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            69999999999999999999875      4666654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.86  E-value=0.035  Score=39.38  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~  151 (227)
                      .+.+++++|||.|.+|..++..|...+. +++++.|..
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            4568999999999999999999999875 799998853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.76  E-value=0.046  Score=36.50  Aligned_cols=45  Identities=16%  Similarity=-0.034  Sum_probs=32.0

Q ss_pred             ccceeEEeCceEEEEEEeeCCCC--cEEEecCCeeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTK--CLHFANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~--~~~v~~~~~~~~~~~~vilAtG   84 (227)
                      ..++++++++++..+++.+....  ......++++.+++|.|++|+|
T Consensus        75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            34679999999999986432111  1222456678899999999998

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.48  E-value=0.042  Score=39.92  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++.+|+|+|+|..|.+.+....++|..|+++..+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~   64 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT   64 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH
Confidence            4678999999999999999999999999999875443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.38  E-value=0.028  Score=40.17  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             eEEEE-ccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLV-GFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~Vv-GgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|+|+ |.|.+|..+|..|++.|.+|+++.|.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58899 5699999999999999999999998643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.049  Score=38.89  Aligned_cols=37  Identities=14%  Similarity=0.213  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ...+|+|+|+|+|-+|--++..|.+.+.+|+++.|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4468999999999999999999999988999998854

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.25  E-value=0.0087  Score=42.36  Aligned_cols=91  Identities=13%  Similarity=0.044  Sum_probs=49.9

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCC-CCCCCCcccceeeecCCCCCCC---C
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIP-SYEGADLFRGLQMHSHDYRVPD---P  115 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p-~~~g~~~~~~~~~~~~~~~~~~---~  115 (227)
                      ...++++++++|..+++     +...+..+ +..+.||.+++|+|.  .|..+ .-.|++.-.+  +....+..-.   -
T Consensus        64 ~~~v~~~~~~~v~~i~~-----~~~~~~~~-~~~i~~D~li~a~G~--~~~~~~~~~gl~~~~~--i~v~~~~~t~~~~i  133 (167)
T d1xhca1          64 KRGIEIRLAEEAKLIDR-----GRKVVITE-KGEVPYDTLVLATGA--PNVDLARRSGIHTGRG--ILIDDNFRTSAKDV  133 (167)
T ss_dssp             HHTEEEECSCCEEEEET-----TTTEEEES-SCEEECSEEEECCCE--ECCHHHHHTTCCBSSS--EECCTTSBCSSTTE
T ss_pred             hccceeeeecccccccc-----cccccccc-ccccccceeEEEEEe--cCCchhhhcCceeCCc--eeeccccEecCCCe
Confidence            34678888999988763     33333334 447999999999998  44311 1123322111  2211111100   0


Q ss_pred             C-----CCCeEEEEccCccHHHHHHHHHhc
Q psy810          116 F-----RDQNVLLVGFGPSGVDIAMDIEKV  140 (227)
Q Consensus       116 ~-----~~~~v~VvGgG~~g~e~a~~l~~~  140 (227)
                      |     ...+..++|++..|++.|..+++.
T Consensus       134 ~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~  163 (167)
T d1xhca1         134 YAIGDCAEYSGIIAGTAKAAMEQARVLADI  163 (167)
T ss_dssp             EECGGGEEBTTBCCCSHHHHHHHHHHHHHH
T ss_pred             EEeeecccCCCeEEChHHHHHHHHHHHHHH
Confidence            0     011233567888899988877653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.023  Score=45.05  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|.+|+-.|..+++.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3999999999999999999999999999874

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.93  E-value=0.022  Score=37.99  Aligned_cols=39  Identities=15%  Similarity=0.041  Sum_probs=28.1

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe--cCCeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA--NEEITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~--~~~~~~~~~~~vilAtG   84 (227)
                      .+++++++++|.+++.     +.....  .+++..+.+|.|++|+|
T Consensus        75 ~gV~i~~~~~V~~i~~-----~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          75 LGIALHLGHSVEGYEN-----GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HTCEEETTCEEEEEET-----TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hcceEEcCcEEEEEcC-----CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            4579999999998863     222222  23346799999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.85  E-value=0.083  Score=35.20  Aligned_cols=41  Identities=20%  Similarity=-0.077  Sum_probs=32.9

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEE-EcCEEEEcc
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLH-YNLLQSLPS   83 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~-~~~~vilAt   83 (227)
                      .+++++++++|.++++.++  +...+.+.+|+.+ .||.|++|.
T Consensus        76 ~gV~i~~~~~v~~i~~~~~--~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          76 NNINIVTFADVVEIKKVSD--KNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TTCEEECSCCEEEEEESST--TCEEEEETTSCEEEEESEEEECC
T ss_pred             CCCEEEECCEEEEEEEcCC--CeEEEEECCCCEEEeCCEEEEeC
Confidence            4679999999999987554  5677888888776 479999984

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.77  E-value=0.036  Score=38.80  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.1

Q ss_pred             eEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      ++.+||+|.+|.-++..|.+.+ .+|+++.|...
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            5899999999999999888776 78999888543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=92.76  E-value=0.041  Score=44.14  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             EEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          121 VLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ++|||+|..|+=+|..|++.+.+|.|+++++
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            7999999999999999999999999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.61  E-value=0.08  Score=38.38  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=35.2

Q ss_pred             CCCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          113 PDPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       113 ~~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ..++.+|+++|.| +|-+|.++|..|.+.|.+|+++.|....
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            3467899999998 6889999999999999999999995443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.38  E-value=0.12  Score=37.21  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+.+++|.|+|.|.+|-++|..+..+|.+|+.+.+.
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccc
Confidence            467899999999999999999999999999999774

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.35  E-value=0.061  Score=37.94  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|.|||.|.+|.-+|..|.+.|.+|+.+.|..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58999999999999999999999999998853

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.15  E-value=0.059  Score=37.47  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -++|+||| .|.+|.-+|..|.+.|.+|+++.+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            36899999 69999999999999999999998854

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=91.99  E-value=0.065  Score=43.44  Aligned_cols=40  Identities=15%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             CCCCCCCCe--EEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          112 VPDPFRDQN--VLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       112 ~~~~~~~~~--v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ++.+..+++  ++|||+|.+|+=+|..|++.+ .+|.|++++.
T Consensus        16 ~p~~~~~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          16 DPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             CGGGTTTCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CcccccCCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            455555663  999999999999999999887 5899999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.82  E-value=0.015  Score=43.12  Aligned_cols=20  Identities=5%  Similarity=-0.373  Sum_probs=16.4

Q ss_pred             eeEEEcCEEEEccCCCCCCCCC
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIP   92 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p   92 (227)
                      +..+.+|++++|||+  +|..|
T Consensus       130 ~~~i~a~~viiAtG~--~p~~l  149 (220)
T d1lvla1         130 GQRIQCEHLLLATGS--SSVEL  149 (220)
T ss_dssp             TEEEECSEEEECCCE--EECCB
T ss_pred             ceeEeeceeeEcCCC--Ccccc
Confidence            458999999999999  66643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.67  E-value=0.1  Score=36.79  Aligned_cols=34  Identities=15%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++|.+||-|.+|..+|..|.+.|.+|+++.|...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            4799999999999999999999999999988543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.65  E-value=0.071  Score=39.17  Aligned_cols=37  Identities=27%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|||-|.+|-++|..+..+|-+|..+.+.
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~   75 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF   75 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence            4567899999999999999999999999999888653

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.62  E-value=0.072  Score=39.31  Aligned_cols=29  Identities=21%  Similarity=0.415  Sum_probs=25.7

Q ss_pred             EEEEccCccHHHHHHHHHhcc-CeEEEEee
Q psy810          121 VLLVGFGPSGVDIAMDIEKVA-KNVFLSHH  149 (227)
Q Consensus       121 v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~  149 (227)
                      |+|||+|+.|+.+|..+++.+ +.|.++..
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            899999999999999999986 56888875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.60  E-value=0.099  Score=35.30  Aligned_cols=42  Identities=5%  Similarity=-0.097  Sum_probs=30.5

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEe--cCC--eeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFA--NEE--ITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~--~~~--~~~~~~~~vilAtG   84 (227)
                      ..++.+++++++.+++..+   ++..+.  ..+  .+.+++|.|++|+|
T Consensus        79 ~~gv~~~~~~~v~~v~~~~---~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          79 YRFDNIMVNTKTVAVEPKE---DGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             GGEEEEECSCEEEEEEEET---TEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HcCcccccCcEEEEEEEcC---CcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            3467899999999998655   333343  332  24799999999999

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.53  E-value=0.12  Score=37.74  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=34.0

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+..|++|.|||-|.+|-++|..+..+|-+|..+.+.
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   81 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY   81 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCc
Confidence            45678999999999999999999999999999988763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.45  E-value=0.094  Score=37.52  Aligned_cols=36  Identities=19%  Similarity=0.480  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +..+|+|+|+|+|-+|--++..|.+.+ +|+++.|..
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~   50 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV   50 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhh
Confidence            357899999999999988888887666 899998853

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.44  E-value=0.1  Score=39.88  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             CCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|.|| |++|..++..|.+.|.+|+.+.|..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            457999996 9999999999999999999999853

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.34  E-value=0.088  Score=38.65  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..++.+++|.|+|-|.+|-++|..+..+|-+|..+.+.
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~   77 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY   77 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cccccceeeeeeecccccccccccccccceeeeccCCc
Confidence            34567899999999999999999999999999988773

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.32  E-value=0.11  Score=38.92  Aligned_cols=41  Identities=5%  Similarity=-0.125  Sum_probs=29.7

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEccCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLPSSH   85 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilAtG~   85 (227)
                      +.+|+++++|++|+..+   +.+++..   ++...+.||+||+|+|.
T Consensus       233 g~~i~~~~~V~~I~~~~---~~~~v~~~~~~~~~~~~ad~VV~a~p~  276 (347)
T d2ivda1         233 GDAAHVGARVEGLARED---GGWRLIIEEHGRRAELSVAQVVLAAPA  276 (347)
T ss_dssp             GGGEESSEEEEEEECC-----CCEEEEEETTEEEEEECSEEEECSCH
T ss_pred             hcccccCCEEEEEEEeC---CeEEEEEEcCCeEEEEECCEEEECCCH
Confidence            45899999999998644   4444432   23367999999999997

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.99  E-value=0.12  Score=36.64  Aligned_cols=35  Identities=9%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      .+++|+|+|+|-+|--++..|.+.+ ++|+++.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            4688999999999999999999887 5899998853

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.90  E-value=0.14  Score=36.10  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ..+++|+|+|+|.+|.-.+..+...|.+|+.+.+.+.+
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k   63 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRK   63 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTT
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhH
Confidence            35889999999999988888887789999998875544

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.71  E-value=0.12  Score=32.00  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      |+|.|+|||.-|.-++..-.++|-++.++...+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            589999999999999999999999999998743

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.67  E-value=0.12  Score=39.06  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             CCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .++|+|.|+ |++|-.++..|.+.|.+|+.+.|..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            478999986 9999999999999999999999854

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.64  E-value=0.11  Score=40.85  Aligned_cols=37  Identities=14%  Similarity=0.167  Sum_probs=32.6

Q ss_pred             CCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +++|+|+|.| +|++|..++..|.+.|.+|+.+.|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999998 689999999999999999999988543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.62  E-value=0.18  Score=33.21  Aligned_cols=34  Identities=21%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      ..+|.|+|||.-|..+|....++|.++.++.+.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4579999999999999999999999999998744

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.44  E-value=0.1  Score=41.09  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             eEEEEccCccHHHHHHHHHh----ccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEK----VAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~----~~~~Vtli~~~  150 (227)
                      -|+|||+|.+|+-.|..+++    .|.+|.|+++.
T Consensus        23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            49999999999988888765    47899999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.43  E-value=0.37  Score=32.00  Aligned_cols=45  Identities=18%  Similarity=-0.035  Sum_probs=30.8

Q ss_pred             ccceeEEeCceEEEEEEeeCCC-CcEEEe--c---CCeeEEEcCEEEEccC
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPT-KCLHFA--N---EEITLHYNLLQSLPSS   84 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~-~~~~v~--~---~~~~~~~~~~vilAtG   84 (227)
                      +.+++++++++|.++++.++.. ....++  .   .+.....+|.|++|+|
T Consensus        72 ~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          72 EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            3468999999999998765432 223332  2   2234678999999998

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.096  Score=40.58  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=26.5

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      -|+|||+|.+|+-.|..+++.+ +|.|++..
T Consensus         9 DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~   38 (305)
T d1chua2           9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKG   38 (305)
T ss_dssp             SEEEECCSHHHHHHHHHHTTTS-CEEEECSS
T ss_pred             CEEEECccHHHHHHHHHhhcCC-CEEEEECC
Confidence            4999999999999999988777 89999874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.20  E-value=0.2  Score=36.13  Aligned_cols=38  Identities=11%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ..+..++++.|+|.|.+|.++|..+..++.+|..+.+.
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeec
Confidence            44567899999999999999999999999999998873

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=0.14  Score=36.19  Aligned_cols=43  Identities=5%  Similarity=-0.066  Sum_probs=30.5

Q ss_pred             eeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           43 IEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        43 ~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+......+..+.+.......+.....+...+.++.+++++|.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  113 (184)
T d1fl2a1          71 VDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA  113 (184)
T ss_dssp             EEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred             ceeeccceeeeecccccccceeeeeeecceeeecccccccccc
Confidence            3455556666766655544556666666678999999999997

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.21  Score=35.71  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~  152 (227)
                      +..+++|+|+|+|-+|--++..|...+ ++++++.|...
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            457899999999999988888888875 57999998543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.95  E-value=0.17  Score=35.45  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=29.9

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +|.|||-|.+|..+|..|.+.|.+|+++.|...
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            589999999999999999999999999988543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=89.87  E-value=0.12  Score=36.95  Aligned_cols=34  Identities=12%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..|.+||-|.+|.-+|..|.+.|.+|+++.|...
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4699999999999999999999999999988654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=89.73  E-value=0.13  Score=41.31  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=32.0

Q ss_pred             CCCCCCCC--eEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          112 VPDPFRDQ--NVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       112 ~~~~~~~~--~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ++++..++  -++|||+|.+|+=+|..|++.+ .+|.|+++++
T Consensus         9 ~p~~~~~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1           9 DPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CGGGTTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CcccccCCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            34444455  4899999999999999999875 5899999863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.57  E-value=0.16  Score=35.78  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .+++|+|+|+|.+|.-.++.+...|.+|+.+.+.+.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            5789999999999999998888889999999875443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.54  E-value=0.21  Score=36.66  Aligned_cols=35  Identities=17%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .+.|++|+|-|-|..|..+|..|.+.|.+|++...
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            56899999999999999999999999999987755

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.28  Score=32.79  Aligned_cols=41  Identities=12%  Similarity=-0.112  Sum_probs=29.7

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEec---C------CeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFAN---E------EITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~------~~~~~~~~~vilAtG   84 (227)
                      .++++++++++.++++.+   +.+.+..   .      ......+|.|++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~---~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          76 AGVEVLKFSQVKEVKKTL---SGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTCEEETTEEEEEEEEET---TEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcC---CeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            467999999999998754   4454421   1      124678999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.28  E-value=0.18  Score=34.92  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=28.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhcc--CeEEEEeec
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVA--KNVFLSHHI  150 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~--~~Vtli~~~  150 (227)
                      .++|+|||+|..|.-+|..|...+  .++.|+.+.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            468999999999999999888864  689999874

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=89.18  E-value=0.14  Score=40.72  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=27.7

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      -++|||+|.+|+-+|..|++. .+|.|+++++
T Consensus        28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             cEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            589999999999999999875 7899999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.09  E-value=0.27  Score=37.16  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +.+|.|+|.||+. +|.++|..|++.|.+|.++.|+.+
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5689999988764 888999999999999999988544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.2  Score=38.59  Aligned_cols=42  Identities=5%  Similarity=-0.129  Sum_probs=35.4

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .+..|+++++|.+|...   .+.+.+.+.+++.+.+|+||+|++.
T Consensus       220 ~g~~i~~~~~v~~I~~~---~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         220 LGDRVKLERPVIYIDQT---RENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HGGGEEESCCEEEEECS---SSSEEEEETTSCEEEESEEEECSCG
T ss_pred             cCCeEEecCcceEEEec---CCeEEEEECCCCEEECCEEEECCCH
Confidence            35689999999998753   3678899999999999999999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.99  E-value=0.089  Score=36.81  Aligned_cols=34  Identities=3%  Similarity=-0.339  Sum_probs=27.1

Q ss_pred             CcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCC
Q psy810           62 KCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGA   97 (227)
Q Consensus        62 ~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~   97 (227)
                      ....+.+.+++.+.||+||+|||.  .|+.+.+++.
T Consensus        83 ~~~~~~~~~~~~i~~D~li~atG~--~~~~~~i~~~  116 (186)
T d1fcda1          83 DKKLVKTAGGAEFGYDRCVVAPGI--ELIYDKIEQR  116 (186)
T ss_dssp             TTTEEEETTSCEEECSEEEECCCE--EECCTTSTEE
T ss_pred             ccceeecccceeeccceEEEEecc--ccchhhhhhh
Confidence            445667777889999999999999  7777777654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.71  E-value=0.29  Score=33.88  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      .+++|.|||+|.+|.-+|..|...  ..++.|+...+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            467999999999999999888876  56899998743

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.68  E-value=0.2  Score=35.08  Aligned_cols=38  Identities=16%  Similarity=0.002  Sum_probs=31.5

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ..+++|+|+|+|.+|.=.+..+...|.+|..+.+.+.+
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            35789999999999988888888889999998875433

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.27  Score=37.04  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=33.0

Q ss_pred             CCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCcc
Q psy810          114 DPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ..+.||.++|.|++. +|-++|..|++.|.+|.+..|..+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            346789888888655 8899999999999999999986543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.3  Score=36.36  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             CCCCCeEEEEcc-----------------CccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGF-----------------GPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGg-----------------G~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ++.|++|+|-+|                 |-+|..+|..+.++|.+||+++.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhc
Confidence            455677776655                 44899999999999999999987

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.18  Score=39.31  Aligned_cols=31  Identities=19%  Similarity=0.417  Sum_probs=27.2

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      .|+|||+|.+|+-.|..+++.  +.+|.|++..
T Consensus         7 DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~   39 (311)
T d1kf6a2           7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKV   39 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            499999999999999999886  5689999864

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.33  Score=34.98  Aligned_cols=37  Identities=16%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..+++|.|+|-|.+|-++|..+..++.+|..+.+.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE   76 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeecccc
Confidence            3567899999999999999999999999999998773

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.27  Score=33.93  Aligned_cols=33  Identities=9%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             CeEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .|++|+|.|..|..++..|...+.+|+++...+
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            489999999999999999999999999998743

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.10  E-value=0.2  Score=34.69  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|.|||.|.+|.-+|..|.+.|.+|+++.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            68999999999999999999999999887643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.86  E-value=0.27  Score=35.72  Aligned_cols=31  Identities=16%  Similarity=0.130  Sum_probs=28.6

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +|.|||.|..|.=+|..|+..|.+|+.+...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            5899999999999999999999999999763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=87.86  E-value=0.19  Score=35.81  Aligned_cols=37  Identities=19%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCcc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~~  153 (227)
                      .|++|+|+|+|.+|.-++..+..+|. +|+++.+.+.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            58999999999999888888888875 78988875433

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.78  E-value=0.24  Score=38.87  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      +.|+|+|+|+ |.+|..++..|.+.|.+|+.+.|.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            3578999985 999999999999999999999984

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=87.72  E-value=0.21  Score=35.39  Aligned_cols=32  Identities=25%  Similarity=0.401  Sum_probs=29.3

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecC
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +|.|||-|.+|..+|..|.+.|.+|+++.|..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            58999999999999999999999999998843

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.56  E-value=0.26  Score=37.30  Aligned_cols=39  Identities=13%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++.+|.++|.|++- +|..+|..|++.|.+|.+..|....
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            35688888888654 7889999999999999999986543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.26  Score=34.71  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCcc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~~  153 (227)
                      .+++|+|+|+|.+|.-+++.+..+|. +|+++.+.+.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~r   63 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR   63 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHH
Confidence            47899999999999998888888876 78888775433

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=87.51  E-value=0.28  Score=33.93  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=27.2

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      |+|.|||+|..|.-+|..|...  ..++.|+...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            7899999999999999888776  4689988763

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.24  E-value=0.48  Score=31.41  Aligned_cols=41  Identities=2%  Similarity=-0.001  Sum_probs=29.2

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe-----cCCeeEEEcCEEEEc
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA-----NEEITLHYNLLQSLP   82 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~-----~~~~~~~~~~~vilA   82 (227)
                      .+++++++++|.++++.++. ....+.     ++++..+++|.|++|
T Consensus        77 ~GV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          77 QGLDFKLSTKVISAKRNDDK-NVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TTCEEECSEEEEEEEEETTT-TEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ccceEEeCCEEEEEEEeCCC-cEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            46799999999999876532 222332     234568999999987

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.20  E-value=0.39  Score=33.63  Aligned_cols=38  Identities=16%  Similarity=0.017  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ...|++|+|+|+|.+|.-.++.+...|.++..+.+...
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            34589999999999998888888888888887776443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.18  E-value=0.38  Score=34.53  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=32.7

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEeec
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+..++++.|+|.|.+|-++|..+..++.+|..+.+.
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~   76 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY   76 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCC
Confidence            3557899999999999999999999999999888763

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.13  E-value=0.41  Score=36.58  Aligned_cols=36  Identities=11%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccC---ccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFG---PSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG---~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.||+++|.|++   =+|..+|..|++.|.+|.+..|.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4679999999976   38889999999999999988773

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.07  E-value=0.3  Score=36.59  Aligned_cols=38  Identities=8%  Similarity=0.084  Sum_probs=32.1

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +.||.++|.|++- +|..+|..|++.|.+|.+..|+.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5689999988765 8899999999999999999986543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.97  E-value=0.47  Score=35.59  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEccC---ccHHHHHHHHHhccCeEEEEeec
Q psy810          115 PFRDQNVLLVGFG---PSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       115 ~~~~~~v~VvGgG---~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++.||.++|.|++   -+|..+|..|++.|.+|.+..|.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4578999999974   38899999999999999887774

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=86.94  E-value=0.42  Score=36.28  Aligned_cols=42  Identities=7%  Similarity=0.008  Sum_probs=31.8

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEe----cCCeeEEEcCEEEEccCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFA----NEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~----~~~~~~~~~~~vilAtG~   85 (227)
                      .+..++++++|.+|...+   ++.++.    ..+++.+.||+||+|++.
T Consensus       248 ~g~~i~~~~~V~~I~~~~---~~v~v~~~~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         248 IQDKVHFNAQVIKIQQND---QKVTVVYETLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             TGGGEESSCEEEEEEECS---SCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             cCCccccCceEEEEEEeC---CeEEEEEEecCCCeEEEEeeEEEecCCH
Confidence            356899999999998643   444443    345578999999999975

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.60  E-value=0.36  Score=33.15  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             CeEEEEccCccHHHHHHHHHhc--cCeEEEEeecCc
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISV  152 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~  152 (227)
                      ++|.|||+|..|..+|..+...  ..++.|+.....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            4799999999999999888776  568999987443

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=0.76  Score=30.87  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             CCCeEEEEccCc-----------cHHHHHHHHHhccCeEEEEeecCccc
Q psy810          117 RDQNVLLVGFGP-----------SGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       117 ~~~~v~VvGgG~-----------~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      ..|+|+|+|+|+           ++.+++..|++.|.++.++...+..+
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            358999999987           67888899999999999998755444

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.08  E-value=0.59  Score=31.13  Aligned_cols=37  Identities=11%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCeEEEEccCc-----------cHHHHHHHHHhccCeEEEEeecCccc
Q psy810          118 DQNVLLVGFGP-----------SGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       118 ~~~v~VvGgG~-----------~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      .++|+|+|+|+           ++.+++..|++.|.++.|+...+..+
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            47899999986           77888999999999999998755443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.45  Score=35.57  Aligned_cols=36  Identities=11%  Similarity=0.255  Sum_probs=30.2

Q ss_pred             CCCCeEEEEccCc---cHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGP---SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~---~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+|.++|.|++-   +|..+|..|++.|.+|.+..|.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4689999998764   67889999999999999988853

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=85.94  E-value=0.16  Score=38.45  Aligned_cols=26  Identities=8%  Similarity=-0.147  Sum_probs=22.9

Q ss_pred             eeEEEcCEEEEccCCCCCCCCCCCCCCC
Q psy810           71 ITLHYNLLQSLPSSHNSVPNIPSYEGAD   98 (227)
Q Consensus        71 ~~~~~~~~vilAtG~~~~p~~p~~~g~~   98 (227)
                      ++.+++|.|++|||.  +|+.|++++.+
T Consensus       169 g~~i~ad~viiAtG~--~P~~~~i~~~~  194 (261)
T d1mo9a1         169 GKVFKAKNLILAVGA--GPGTLDVPEQP  194 (261)
T ss_dssp             TEEEEBSCEEECCCE--ECCCCCSTCEE
T ss_pred             cceEeeeeeeeccCC--CCCcCcccccc
Confidence            468999999999999  99999998753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.93  E-value=0.38  Score=33.42  Aligned_cols=36  Identities=17%  Similarity=0.061  Sum_probs=30.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+++|+|.|+|.+|.=++..+...+.+|+.+.+.+.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            578999999999999888888888889988876443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=85.84  E-value=0.45  Score=35.73  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             CCCCeEEEEcc-Cc--cHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGF-GP--SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGg-G~--~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.+|+++|.|+ |.  +|..+|..|++.|.+|.+..|..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            46899999995 44  78889999999999999988744

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.35  Score=36.15  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=30.2

Q ss_pred             CCCCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810          116 FRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH  149 (227)
Q Consensus       116 ~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~  149 (227)
                      ++.++|+|+|.|-.|.++|..|++.|. +++|+..
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            456899999999999999999999975 7899876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.67  E-value=0.36  Score=33.41  Aligned_cols=33  Identities=12%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             eEEEEccCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++.+||.|.+|.-++..|.+.+.+|+++.|...
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~   34 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHH
Confidence            589999999999999999988999999988543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=0.63  Score=32.04  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=27.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEE-ecCCeeEEEcCEEEEccC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHF-ANEEITLHYNLLQSLPSS   84 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v-~~~~~~~~~~~~vilAtG   84 (227)
                      .++.+..++++..++.     +...+ ..++...+.||.||+|+|
T Consensus       121 ~gv~~~~~~~v~~i~~-----~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         121 RGVKMIPGVSYQKIDD-----DGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             TTCEEECSCEEEEEET-----TEEEEEETTEEEEECCSEEEECCC
T ss_pred             CCeEEEeeeEEEEEcC-----CCCEEecCCeEEEEECCEEEECCC
Confidence            3567788888888763     33333 334446799999999999

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.35  E-value=0.55  Score=33.87  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .+..++++.|||-|.+|-.+|..+..++-+|..+.+
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~   78 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDT   78 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECS
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccccccccc
Confidence            355689999999999999999999999999988866

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.29  E-value=0.32  Score=35.14  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             CCeEEEEcc-CccHHHHHHHHHhccC--eEEEEee
Q psy810          118 DQNVLLVGF-GPSGVDIAMDIEKVAK--NVFLSHH  149 (227)
Q Consensus       118 ~~~v~VvGg-G~~g~e~a~~l~~~~~--~Vtli~~  149 (227)
                      +|+|+|.|| |++|-+++..|.+.+.  +|+...|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r   36 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR   36 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeC
Confidence            589999997 9999999999998876  5665555

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.29  Score=37.20  Aligned_cols=38  Identities=16%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +.||+++|.|++- +|..+|..|++.|.+|.+..|....
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5789998888654 7788999999999999999996543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.96  E-value=0.64  Score=35.03  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++.||.++|.|++ -+|..+|..|++.|.+|.+..|....
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4678999999865 37788999999999999999885443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.89  E-value=0.46  Score=33.15  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=27.1

Q ss_pred             CeEEEEccCccHHHHHHHHHhccC--eEEEEeec
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVAK--NVFLSHHI  150 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~~--~Vtli~~~  150 (227)
                      |+|.|||.|.+|.-+|..|.+.+.  +|+.+.+.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            479999999999999999998764  67777764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.87  E-value=0.63  Score=35.07  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+.||.++|.|++- +|..+|..|++.|.+|.+..|...
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46789888888643 778899999999999999988543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.82  E-value=0.67  Score=30.22  Aligned_cols=40  Identities=8%  Similarity=-0.113  Sum_probs=29.2

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEec---CCeeEEEcCEEEEc
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFAN---EEITLHYNLLQSLP   82 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~---~~~~~~~~~~vilA   82 (227)
                      ..+++++++++|.+++..+   +...+..   ++++.+.+|.|++.
T Consensus        75 ~~GI~i~~~~~v~~i~~~~---~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          75 KKGVEVVTNALAKGAEERE---DGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HTTCEEEESEEEEEEEEET---TEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hcCCEEEcCCEEEEEEEcC---CEEEEEEEeCCCEEEEEeEEEEEC
Confidence            3468999999999998654   3455543   23467999999974

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.70  E-value=0.42  Score=35.72  Aligned_cols=81  Identities=9%  Similarity=-0.079  Sum_probs=48.2

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCCCCCCCCCCCCCcccceeeecCCCCCCCCCCCCeE
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNSVPNIPSYEGADLFRGLQMHSHDYRVPDPFRDQNV  121 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  121 (227)
                      +++++ ..+|.++...+.  ....|.+.++..+.++.||||||...       .|       .+|.-          +..
T Consensus        82 nL~i~-q~~V~dli~e~~--~v~gV~t~~G~~~~AkaVILtTGTFL-------~G-------~ihiG----------~~~  134 (230)
T d2cula1          82 PLHLF-QATATGLLLEGN--RVVGVRTWEGPPARGEKVVLAVGSFL-------GA-------RLFLG----------GVV  134 (230)
T ss_dssp             TEEEE-ECCEEEEEEETT--EEEEEEETTSCCEECSEEEECCTTCS-------SC-------EEEET----------TEE
T ss_pred             CHHHH-hccceeeEeccc--ceeeEEeccccEEEEeEEEEccCcce-------ee-------EEEEE----------eee
Confidence            44554 345565543332  44567888888999999999999922       22       23322          111


Q ss_pred             EEEc--cCccHHHHHHHHHhccCeEE-EEee
Q psy810          122 LLVG--FGPSGVDIAMDIEKVAKNVF-LSHH  149 (227)
Q Consensus       122 ~VvG--gG~~g~e~a~~l~~~~~~Vt-li~~  149 (227)
                      .--|  |...+..++..|..+|-++- +=+.
T Consensus       135 ~~~GR~ge~~s~~Ls~~L~~lGf~~~rlkTg  165 (230)
T d2cula1         135 EEAGRLSEASYPDLLEDLSRLGFRFVEREGE  165 (230)
T ss_dssp             ESEEETTEECCSHHHHHHHHTTCCEEEEEEE
T ss_pred             eeccccCCchhhhHHHHHHhcCCceeeecCC
Confidence            1111  23455689999999887654 4443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.45  E-value=0.55  Score=31.02  Aligned_cols=37  Identities=5%  Similarity=-0.049  Sum_probs=27.6

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCC
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSH   85 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~   85 (227)
                      .++++++++++..++.     + . +.++ +..+.+|.||+|+|.
T Consensus        85 ~GV~~~~~~~v~~~~~-----~-~-v~~~-~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          85 TGVKFFLNSELLEANE-----E-G-VLTN-SGFIEGKVKICAIGI  121 (122)
T ss_dssp             TTEEEECSCCEEEECS-----S-E-EEET-TEEEECSCEEEECCE
T ss_pred             CCcEEEeCCEEEEEeC-----C-E-EEeC-CCEEECCEEEEEEEe
Confidence            4679999999988753     2 2 2333 457999999999994

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=84.42  E-value=0.62  Score=32.33  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      +.++|+|||+|..|.-+|..+...+ .++.|+....
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3578999999999998887776654 4788886543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.23  E-value=0.66  Score=30.70  Aligned_cols=40  Identities=8%  Similarity=0.077  Sum_probs=28.3

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEE--ec---CCeeEEEcCEEEEcc
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHF--AN---EEITLHYNLLQSLPS   83 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v--~~---~~~~~~~~~~vilAt   83 (227)
                      .++++++++++.+++..+   +...+  ..   ++...+.+|.|++|.
T Consensus        79 ~GI~i~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          79 QGMKFKLKTKVVGVDTSG---DGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SSCCEECSEEEEEEECSS---SSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ccceEEcCCceEEEEEcc---CeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            467999999999998643   34433  22   233579999999983

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=84.22  E-value=0.58  Score=32.11  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=27.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhc--cCeEEEEeecC
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHIS  151 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~  151 (227)
                      +.+|+|||+|..|.-+|..+...  ..++.|+....
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            35799999999999999877765  56899987643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.78  Score=34.01  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=30.4

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++||.++|.|++- +|..+|..|++.|.+|.+..|+..
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            5688888887654 778899999999999999998654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=84.02  E-value=0.65  Score=34.97  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             CCCCeEEEEccC---ccHHHHHHHHHhccCeEEEEeec
Q psy810          116 FRDQNVLLVGFG---PSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       116 ~~~~~v~VvGgG---~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      ++||+++|.|++   -+|..+|..|++.|.+|.+..|.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~   40 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN   40 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999963   38889999999999999999984

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.98  E-value=0.72  Score=34.39  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +.||+++|.|++ -+|..+|..|++.|.+|.+..|....
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            578999888864 47788999999999999999985443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.85  E-value=0.81  Score=33.98  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+.+|+++|.|++- +|..+|..|++.|.+|.+..|...
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            45788888888654 888999999999999999998543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.85  E-value=0.55  Score=35.05  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=31.0

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +.+|.++|.|++ -+|..+|..|++.|.+|.+..|....
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            467888888864 48889999999999999999985443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.79  E-value=0.88  Score=32.10  Aligned_cols=42  Identities=12%  Similarity=0.194  Sum_probs=33.8

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhcc-CeEEEEeecCccc
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHISVAF  154 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~~~~  154 (227)
                      .....+++|+|+|.|..|.-.+..+...| .+|..+.+.+.++
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH
Confidence            33445889999999999999999998887 6899998755543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=83.23  E-value=0.77  Score=34.20  Aligned_cols=36  Identities=11%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             CCCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          114 DPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       114 ~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      ..+.+++|+|-|-|+.|..+|..|.+.|.+|....-
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~   70 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV   70 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecc
Confidence            456799999999999999999999999999886644

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.08  E-value=0.62  Score=35.13  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++.||.++|.|++ -+|..+|..|++.|.+|.+..|..+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4568988888865 37788999999999999999885443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=82.98  E-value=0.7  Score=34.71  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.||.++|.|++- +|.++|..|++.|.+|.+..++.
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            45789888887644 78899999999999999876644

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=82.78  E-value=0.97  Score=33.72  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecC
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      .+.+|.++|.|++ -+|..+|..|++.|.+|.+..|..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4678888888764 477889999999999999998844

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.59  E-value=0.92  Score=33.95  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ++.+|.++|.|++ -+|..+|..|++.|.+|.+..|...
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578888888864 3778899999999999999988543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=82.46  E-value=1.1  Score=34.17  Aligned_cols=39  Identities=8%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             CCCCCCeEEEEc-cCccHHHHHHHHHhccCeEEEEeecCc
Q psy810          114 DPFRDQNVLLVG-FGPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       114 ~~~~~~~v~VvG-gG~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+.||.++|.| ++-+|..+|..|++.|.+|.+..|...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            467899999887 456778899999999999999998543

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.10  E-value=0.78  Score=34.50  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             CCCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCc
Q psy810          114 DPFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       114 ~~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +.+++|.++|.|++ -+|.++|..|++.|.+|.+..|...
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34678888888754 4777899999999999999988543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.86  E-value=0.71  Score=30.52  Aligned_cols=40  Identities=13%  Similarity=0.008  Sum_probs=28.7

Q ss_pred             ccceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEcc
Q psy810           40 IPCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPS   83 (227)
Q Consensus        40 ~~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAt   83 (227)
                      ..++++++++++.++++.+   ....+. .+++.+.+|.||+|.
T Consensus        84 ~~gv~~~~~~~v~~i~~~~---~~~~v~-~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          84 ANNITIATGETVERYEGDG---RVQKVV-TDKNAYDADLVVVAV  123 (123)
T ss_dssp             TTTEEEEESCCEEEEECSS---BCCEEE-ESSCEEECSEEEECS
T ss_pred             cCCeEEEeCceEEEEEcCC---CEEEEE-eCCCEEECCEEEEEC
Confidence            3468999999999987521   333343 455689999999983

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.85  E-value=1.2  Score=30.94  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=28.5

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      ...+|.|||.|..|.-+|..|...  ..++.|+...
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            345799999999999999988877  5689999764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=81.81  E-value=1.2  Score=31.15  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             CCCeEEEEccCccHHHHHHHHHhc--cCeEEEEeec
Q psy810          117 RDQNVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~  150 (227)
                      ..++|.|||.|..|.-+|..|...  ..++.|+...
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            356899999999999999988876  4689999763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=81.79  E-value=0.8  Score=31.22  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             CeEEEEccCccHHHHHHHHHhcc-CeEEEEeecC
Q psy810          119 QNVLLVGFGPSGVDIAMDIEKVA-KNVFLSHHIS  151 (227)
Q Consensus       119 ~~v~VvGgG~~g~e~a~~l~~~~-~~Vtli~~~~  151 (227)
                      ++|.|||+|..|.-+|..|...+ .++.++....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999998887763 4788886533

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.77  E-value=0.96  Score=33.99  Aligned_cols=38  Identities=13%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             CCCCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      +++||.++|.|+ +-+|.++|..|++.|.+|.+..|...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            457899999985 44788999999999999999998543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=81.66  E-value=0.8  Score=31.15  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             eEEEEccCccHHHHHHHHHhc--cCeEEEEeecCc
Q psy810          120 NVLLVGFGPSGVDIAMDIEKV--AKNVFLSHHISV  152 (227)
Q Consensus       120 ~v~VvGgG~~g~e~a~~l~~~--~~~Vtli~~~~~  152 (227)
                      +|+|||+|..|.-+|..+...  ..++.|+...+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            689999999999999888876  468999986443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.57  E-value=0.96  Score=33.39  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCccc
Q psy810          116 FRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVAF  154 (227)
Q Consensus       116 ~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~~  154 (227)
                      +++|+++|.|++ -+|..+|..|++.|.+|.+..|..+.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l   41 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL   41 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            358889999864 478889999999999999999854433

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.44  E-value=1  Score=33.90  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      .+.+|.++|.|++ -+|..+|..|++.|.+|.+..|...
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4578888888754 3778899999999999999988543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.40  E-value=1.2  Score=34.31  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=32.7

Q ss_pred             CCCCCCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCc
Q psy810          111 RVPDPFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISV  152 (227)
Q Consensus       111 ~~~~~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~  152 (227)
                      ..+-.+.||.++|.|++- +|..+|..|++.|.+|.+..|...
T Consensus         5 ~~~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           5 LAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            334456789888887543 778899999999999999988543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=81.12  E-value=1.1  Score=32.96  Aligned_cols=43  Identities=7%  Similarity=-0.147  Sum_probs=36.3

Q ss_pred             ceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEccCCCC
Q psy810           42 CIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLPSSHNS   87 (227)
Q Consensus        42 ~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilAtG~~~   87 (227)
                      ...+++++++..+....   +.++++.++|..+.+|.+|.|.|.++
T Consensus       110 ~~~~~~~~~v~~~~~~~---~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1         110 PERYHTSKCLVGLSQDS---ETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             STTEETTCCEEEEEECS---SCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             cceeecCcEEEEEEeeC---CceEEEECCCCEEEEEEEeccccccc
Confidence            46788999999988644   67889999999999999999999844

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.12  E-value=0.67  Score=37.82  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=28.8

Q ss_pred             CCeEEEEccCccHHHHHHHHHhccC-eEEEEee
Q psy810          118 DQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHH  149 (227)
Q Consensus       118 ~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~  149 (227)
                      ..+|+|||.|..|.|+|..|+..|. +++|+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            4689999999999999999999865 7999977

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.92  E-value=0.68  Score=33.15  Aligned_cols=41  Identities=7%  Similarity=-0.176  Sum_probs=28.5

Q ss_pred             cceeEEeCceEEEEEEeeCCCCcEEEecCCeeEEEcCEEEEc
Q psy810           41 PCIEIKFGSSWAEIEKFSVPTKCLHFANEEITLHYNLLQSLP   82 (227)
Q Consensus        41 ~~~~i~~~~~V~~i~~~~~~~~~~~v~~~~~~~~~~~~vilA   82 (227)
                      .+.+|++|++|.+|...++ .......+.+++.+.||+||..
T Consensus       249 ~G~~i~~~~~V~~I~~~~~-~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         249 YGGTYMLDTPIDEVLYKKD-TGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             TTCEEECSCCCCEEEEETT-TTEEEEEEETTEEEECSCEEEC
T ss_pred             cCCEEEeCCEeeEEEEECC-CCEEEEEEcCCEEEECCEEEEC
Confidence            3568999999999975443 2334433455678999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.92  E-value=0.83  Score=34.13  Aligned_cols=38  Identities=11%  Similarity=0.114  Sum_probs=30.7

Q ss_pred             CCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          116 FRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       116 ~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      +.||.++|.|++ -+|..+|..|++.|.+|.+..|....
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            468888888764 47789999999999999999885443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.75  E-value=1.1  Score=33.01  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=28.9

Q ss_pred             CCCeEEEEcc-CccHHHHHHHHHhccCeEEEEeec
Q psy810          117 RDQNVLLVGF-GPSGVDIAMDIEKVAKNVFLSHHI  150 (227)
Q Consensus       117 ~~~~v~VvGg-G~~g~e~a~~l~~~~~~Vtli~~~  150 (227)
                      .+|+|+|.|+ +-+|..+|..|++.|.+|.++.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3789999986 458889999999999999998774

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=80.59  E-value=1  Score=31.74  Aligned_cols=39  Identities=8%  Similarity=0.094  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccC-eEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAK-NVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~-~Vtli~~~~~~  153 (227)
                      -..+++|+|+|.|..|+=.+..+...|. .|++..+.+.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            3457899999999999999988888876 57777664433

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.51  E-value=0.67  Score=35.13  Aligned_cols=39  Identities=21%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .+.+|.++|.|++ -+|..+|..|++.|.+|.+..|..+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            3568888888753 47778999999999999999985443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=80.38  E-value=0.72  Score=34.41  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEccC-ccHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFG-PSGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG-~~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      ++.||.++|.|++ -+|..+|..|++.|.+|.+..|..+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3568888887754 47788999999999999999885443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=80.38  E-value=0.84  Score=34.28  Aligned_cols=36  Identities=14%  Similarity=0.269  Sum_probs=28.6

Q ss_pred             CCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecC
Q psy810          116 FRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHIS  151 (227)
Q Consensus       116 ~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~  151 (227)
                      +.||.++|.|++- +|..+|..|++.|.+|.+..|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3577777776544 77889999999999999998853

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=80.30  E-value=1.1  Score=33.52  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=30.7

Q ss_pred             CCCCCeEEEEccCccHHHHHHHHHhccCeEEEEee
Q psy810          115 PFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFLSHH  149 (227)
Q Consensus       115 ~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtli~~  149 (227)
                      .+.+++|+|-|-|+.|..+|..|.+.|.+|+-+..
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeec
Confidence            46799999999999999999999999998865543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.27  E-value=0.68  Score=34.91  Aligned_cols=39  Identities=13%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             CCCCCeEEEEccCc-cHHHHHHHHHhccCeEEEEeecCcc
Q psy810          115 PFRDQNVLLVGFGP-SGVDIAMDIEKVAKNVFLSHHISVA  153 (227)
Q Consensus       115 ~~~~~~v~VvGgG~-~g~e~a~~l~~~~~~Vtli~~~~~~  153 (227)
                      .+.+|.++|.|++- +|..+|..|++.|.+|.+..|....
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            34688888887643 7778999999999999999885443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.22  E-value=1.4  Score=30.72  Aligned_cols=37  Identities=8%  Similarity=0.142  Sum_probs=28.0

Q ss_pred             CCCCCCCeEEEEccCccHHHHHHHHHhccCeEEE-Eee
Q psy810          113 PDPFRDQNVLLVGFGPSGVDIAMDIEKVAKNVFL-SHH  149 (227)
Q Consensus       113 ~~~~~~~~v~VvGgG~~g~e~a~~l~~~~~~Vtl-i~~  149 (227)
                      .....+++|+|+|+|.+|.=++..+...+.++.+ ..+
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            3344588999999999999888888887765544 444

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.02  E-value=1.3  Score=32.30  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CCCeEEEEc-cCccHHHHHHHHHhccC--eEEEEeecCcc
Q psy810          117 RDQNVLLVG-FGPSGVDIAMDIEKVAK--NVFLSHHISVA  153 (227)
Q Consensus       117 ~~~~v~VvG-gG~~g~e~a~~l~~~~~--~Vtli~~~~~~  153 (227)
                      ..++|+|.| .|.+|-+++..|.+.+.  +|+++.|+...
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            457899997 69999999999988874  89999996543