Psyllid ID: psy8155
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | 2.2.26 [Sep-21-2011] | |||||||
| Q91VE0 | 643 | Long-chain fatty acid tra | yes | N/A | 0.513 | 0.493 | 0.487 | 2e-83 | |
| Q4R3Y4 | 643 | Long-chain fatty acid tra | N/A | N/A | 0.573 | 0.550 | 0.444 | 2e-83 | |
| Q6P1M0 | 643 | Long-chain fatty acid tra | yes | N/A | 0.573 | 0.550 | 0.442 | 5e-83 | |
| P97849 | 646 | Long-chain fatty acid tra | yes | N/A | 0.554 | 0.529 | 0.459 | 2e-82 | |
| Q60714 | 646 | Long-chain fatty acid tra | no | N/A | 0.534 | 0.510 | 0.470 | 5e-82 | |
| Q5RDY4 | 643 | Long-chain fatty acid tra | yes | N/A | 0.573 | 0.550 | 0.436 | 3e-81 | |
| Q3ZKN0 | 646 | Long-chain fatty acid tra | no | N/A | 0.533 | 0.509 | 0.480 | 1e-80 | |
| Q6PCB7 | 646 | Long-chain fatty acid tra | no | N/A | 0.534 | 0.510 | 0.461 | 2e-79 | |
| Q9Y2P4 | 619 | Long-chain fatty acid tra | no | N/A | 0.510 | 0.508 | 0.415 | 9e-65 | |
| O14975 | 620 | Very long-chain acyl-CoA | no | N/A | 0.575 | 0.572 | 0.386 | 2e-62 |
| >sp|Q91VE0|S27A4_MOUSE Long-chain fatty acid transport protein 4 OS=Mus musculus GN=Slc27a4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/328 (48%), Positives = 210/328 (64%), Gaps = 11/328 (3%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKG 258
RR Q+ T+ +F R P+K +FE +T WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RRYLQERKTVPLLFASMVQRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
+ VAL +ENR EFV LWLG++KLGV ALIN NLR+++L HC++ + A I+G+E+ A
Sbjct: 127 NVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALRHCLDTSKARALIFGSEMASA 186
Query: 319 VQEISTSLGSNVKLF---SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ EI SL + LF SW P S+ PV ++ L PLL + P PS + G DK
Sbjct: 187 ICEIHASLEPTLSLFCSGSWEP----STVPVS-TEHLDPLLEDAPKHLPSHPDK-GFTDK 240
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
L YIYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ
Sbjct: 241 LFYIYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDDIVYDCLPLYHSAGNIVGIGQ 300
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFG 495
L+ G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ G
Sbjct: 301 CLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAESRHKVRMALG 360
Query: 496 NGLRPQIWSEFVDRFRIAQIGEFYGATE 523
NGLR IW++F RF I Q+ EFYGATE
Sbjct: 361 NGLRQSIWTDFSSRFHIPQVAEFYGATE 388
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Mus musculus (taxid: 10090) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q4R3Y4|S27A4_MACFA Long-chain fatty acid transport protein 4 OS=Macaca fascicularis GN=SLC27A4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/371 (44%), Positives = 225/371 (60%), Gaps = 17/371 (4%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKG 258
R+ ++ T+ +F R P+K +FE +T WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RQCLRERRTVPILFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D A+ +ENR EFV LWLG++KLGV ALIN NLR+++LLHC+ + A ++G+E+ A
Sbjct: 127 DVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASA 186
Query: 319 VQEISTSLGSNVKLF---SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ EI SL ++ LF SW P+ +S+ + L PLL + P PS + G DK
Sbjct: 187 ICEIHASLDPSLSLFCSGSWEPNAVPTST-----EHLDPLLEDAPKHLPSCPDK-GFTDK 240
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
L YIYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ
Sbjct: 241 LFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIIYDCLPLYHSAGNIVGIGQ 300
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFG 495
L+ G VVIRKKFSAS ++ D KYKCT+ QYIGE+CRYLL+ P + + H VR+ G
Sbjct: 301 CLLHGMTVVIRKKFSASRFWDDCIKYKCTIVQYIGELCRYLLNQPPREAENQHQVRMALG 360
Query: 496 NGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL 555
NGLR IW+ F RF I Q+ EFYGATE ++ + D + G + S+ P
Sbjct: 361 NGLRQSIWTNFSSRFHIPQVAEFYGATECNCSL----GNFDSQVGACGFNSRILSFVYP- 415
Query: 556 FIRCLREVEMT 566
IR +R E T
Sbjct: 416 -IRLVRVNEDT 425
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Macaca fascicularis (taxid: 9541) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q6P1M0|S27A4_HUMAN Long-chain fatty acid transport protein 4 OS=Homo sapiens GN=SLC27A4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/371 (44%), Positives = 223/371 (60%), Gaps = 17/371 (4%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKG 258
R+ Q+ T+ +F R P+K +FE +T WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RQCLQERRTVPILFASTVRRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D A+ +ENR EFV LWLG++KLGV ALIN NLR+++LLHC+ + A ++G+E+ A
Sbjct: 127 DVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTTSRARALVFGSEMASA 186
Query: 319 VQEISTSLGSNVKLF---SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ E+ SL ++ LF SW P + P ++ L PLL + P PS + G DK
Sbjct: 187 ICEVHASLDPSLSLFCSGSWEP-----GAVPPSTEHLDPLLKDAPKHLPSCPDK-GFTDK 240
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
L YIYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ
Sbjct: 241 LFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQ 300
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFG 495
L+ G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ G
Sbjct: 301 CLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALG 360
Query: 496 NGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL 555
NGLR IW+ F RF I Q+ EFYGATE ++ + D + G + S+ P
Sbjct: 361 NGLRQSIWTNFSSRFHIPQVAEFYGATECNCSL----GNFDSQVGACGFNSRILSFVYP- 415
Query: 556 FIRCLREVEMT 566
IR +R E T
Sbjct: 416 -IRLVRVNEDT 425
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|P97849|S27A1_RAT Long-chain fatty acid transport protein 1 OS=Rattus norvegicus GN=Slc27a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 210/346 (60%), Gaps = 4/346 (1%)
Query: 189 ALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRV 246
L +R RR + TI IF+ A R P ++ + ++ WT Q++ YSN V
Sbjct: 57 GLSVLIRVRLELRRHRRAGDTIPRIFQAVAQRQPERLALVDASSGICWTFAQLDTYSNAV 116
Query: 247 ANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGV 306
AN FL G GD VA+ LE RPEFV LWLGL+K GV+ AL+N NLR+ L C+ +
Sbjct: 117 ANLFLQLGFAPGDVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAA 176
Query: 307 SAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
A IYG E+ AV E+S LG + L + S +P +Q L P+L+E PT+P +
Sbjct: 177 KALIYGGEMAAAVAEVSEQLGKS--LLKFCSGDLGPESVLPDTQLLDPMLAEAPTTPLAQ 234
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
+ G+ D+L YIYTSGTTGLPKAA++ + RYY + + R D Y LPLYH+
Sbjct: 235 APGKGMDDRLFYIYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRANDVLYDCLPLYHS 294
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
AG M +GQ +I+G VV+RKKFSAS ++ D KY CTV QYIGE+CRYLL P + ++
Sbjct: 295 AGNIMGVGQCIIYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVER 354
Query: 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDIN 532
H VRL GNGLRP IW EF F + QIGEFYGATE +I +++
Sbjct: 355 RHRVRLAVGNGLRPAIWEEFTQGFGVRQIGEFYGATECNCSIANMD 400
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of Fatp1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q60714|S27A1_MOUSE Long-chain fatty acid transport protein 1 OS=Mus musculus GN=Slc27a1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/334 (47%), Positives = 207/334 (61%), Gaps = 4/334 (1%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
RR + TI IF+ A R P ++ + ++ WT Q++ YSN VAN F G G
Sbjct: 69 RRHRRAGDTIPCIFQAVARRQPERLALVDASSGICWTFAQLDTYSNAVANLFRQLGFAPG 128
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VA+ LE RPEFV LWLGL+K GV+ AL+N NLR+ L C+ + A IYG E+ A
Sbjct: 129 DVVAVFLEGRPEFVGLWLGLAKAGVVAALLNVNLRREPLAFCLGTSAAKALIYGGEMAAA 188
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
V E+S LG + L + S +P +Q L P+L+E PT+P + + G+ D+L Y
Sbjct: 189 VAEVSEQLGKS--LLKFCSGDLGPESILPDTQLLDPMLAEAPTTPLAQAPGKGMDDRLFY 246
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
IYTSGTTGLPKAA++ + RYY + + R D Y LPLYH+AG M +GQ +I
Sbjct: 247 IYTSGTTGLPKAAIVVHSRYYRIAAFGHHSYSMRAADVLYDCLPLYHSAGNIMGVGQCVI 306
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
+G VV+RKKFSAS ++ D KY CTV QYIGE+CRYLL P + ++ H VRL GNGL
Sbjct: 307 YGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLRQPVRDVEQRHRVRLAVGNGL 366
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDIN 532
RP IW EF RF + QIGEFYGATE +I +++
Sbjct: 367 RPAIWEEFTQRFGVPQIGEFYGATECNCSIANMD 400
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FatP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RDY4|S27A4_PONAB Long-chain fatty acid transport protein 4 OS=Pongo abelii GN=SLC27A4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/371 (43%), Positives = 222/371 (59%), Gaps = 17/371 (4%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
R+ ++ T+ +F R P+K +FE T+ WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RQCLRERRTVPILFASTVRRHPDKTALIFEGTDTLWTFRQLDEYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D A+ +ENR EFV LWLG++KLGV ALIN NLR+++ LHC+ + A ++G+E+ A
Sbjct: 127 DVAAIFMENRNEFVGLWLGMAKLGVEAALINTNLRRDAQLHCLTTSRARALVFGSEMASA 186
Query: 319 VQEISTSLGSNVKLF---SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ EI SL ++ LF SW P+ +S+ + L PLL + P P + G DK
Sbjct: 187 ICEIHASLDPSLSLFCSGSWEPNAVPTST-----EHLDPLLKDAPKHLPICPDK-GFTDK 240
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
L YIYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ
Sbjct: 241 LFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPNDIVYDCLPLYHSAGNIVGIGQ 300
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFG 495
L+ G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ G
Sbjct: 301 CLLHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAENQHQVRMALG 360
Query: 496 NGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL 555
NGLR IW+ F RF I Q+ EFYGATE ++ + D + G + S+ P
Sbjct: 361 NGLRQSIWTNFSSRFHIPQVAEFYGATECNCSL----GNFDSQVGACGFNSRILSFVYP- 415
Query: 556 FIRCLREVEMT 566
IR +R E T
Sbjct: 416 -IRLVRVNEDT 425
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q3ZKN0|S27A1_BOVIN Long-chain fatty acid transport protein 1 OS=Bos taurus GN=SLC27A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/335 (48%), Positives = 203/335 (60%), Gaps = 6/335 (1%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
RR + TI IF+ R P ++ + + WT Q++AYSN VAN F G G
Sbjct: 69 RRHQRARHTIPQIFQAVVQRQPERLALVDAGSGACWTFAQLDAYSNAVANLFRRLGFAPG 128
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VA+ +E RPEFV LWLGL+K GV AL+N NLR+ L C+ +G A ++G EL A
Sbjct: 129 DVVAIFMEGRPEFVGLWLGLAKAGVEAALLNVNLRREPLAFCLGTSGAKALVFGGELAAA 188
Query: 319 VQEISTSLG-SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLI 377
V E+S LG S VK S D P +Q L PLL E T+P + G+ D+L
Sbjct: 189 VAEMSGELGKSLVKFCSGDVGPDGV---FPDTQLLDPLLKETSTAPLAQPPGKGMDDRLF 245
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
YIYTSGTTGLPKAA+I + RYY + Y + D Y LPLYH+AG M +GQ L
Sbjct: 246 YIYTSGTTGLPKAAIIVHSRYYRIAAFGHYSYSMQAADVLYDCLPLYHSAGNIMGVGQCL 305
Query: 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 497
I+G VV+RKKFSAS ++ D KY CTV QYIGE+CRYLL P + + H VRL GNG
Sbjct: 306 IYGLTVVLRKKFSASRFWDDCVKYNCTVVQYIGEICRYLLKQPVREAEGRHRVRLAVGNG 365
Query: 498 LRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDIN 532
LRP IW EF +RF + QIGEFYGATE +I +++
Sbjct: 366 LRPSIWEEFTERFGVRQIGEFYGATECNCSIANMD 400
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q6PCB7|S27A1_HUMAN Long-chain fatty acid transport protein 1 OS=Homo sapiens GN=SLC27A1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/334 (46%), Positives = 202/334 (60%), Gaps = 4/334 (1%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
RR + TI IF+ R P ++ + T WT Q++AYSN VAN F G G
Sbjct: 69 RRHQRAGHTIPRIFQAVVQRQPERLALVDAGTGECWTFAQLDAYSNAVANLFRQLGFAPG 128
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VA+ LE RPEFV LWLGL+K G+ AL+N NLR+ L C+ +G A I+G E+ A
Sbjct: 129 DVVAIFLEGRPEFVGLWLGLAKAGMEAALLNVNLRREPLAFCLGTSGAKALIFGGEMVAA 188
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
V E+S LG + L + +P + L PLL E T+P + G+ D+L Y
Sbjct: 189 VAEVSGHLGKS--LIKFCSGDLGPEGILPDTHLLDPLLKEASTAPLAQIPSKGMDDRLFY 246
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
IYTSGTTGLPKAA++ + RYY + + + D Y LPLYH+AG + +GQ LI
Sbjct: 247 IYTSGTTGLPKAAIVVHSRYYRMAAFGHHAYRMQAADVLYDCLPLYHSAGNIIGVGQCLI 306
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
+G VV+RKKFSAS ++ D KY CTV QYIGE+CRYLL P + ++ H VRL GNGL
Sbjct: 307 YGLTVVLRKKFSASRFWDDCIKYNCTVVQYIGEICRYLLKQPVREAERRHRVRLAVGNGL 366
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDIN 532
RP IW EF +RF + QIGEFYGATE +I +++
Sbjct: 367 RPAIWEEFTERFGVRQIGEFYGATECNCSIANMD 400
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. The LFCA import appears to be hormone-regulated in a tissue-specific manner. In adipocytes, but not myocytes, insulin induces a rapid translocation of FATP1 from intracellular compartments to the plasma membrane, paralleled by increased LFCA uptake. May act directly as a bona fide transporter, or alternatively, in a cytoplasmic or membrane-associated multimeric protein complex to trap and draw fatty acids towards accumulation. Plays a pivotal role in regulating available LFCA substrates from exogenous sources in tissues undergoing high levels of beta-oxidation or triglyceride synthesis. May be involved in regulation of cholesterol metabolism. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9Y2P4|S27A6_HUMAN Long-chain fatty acid transport protein 6 OS=Homo sapiens GN=SLC27A6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/327 (41%), Positives = 190/327 (58%), Gaps = 12/327 (3%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQG-LKKGDSVALMLE 266
+T+ D F HA R P K ++E +T Q V+ S+RVA+ FL LKKGD+VAL++
Sbjct: 54 VTVLDKFLSHAKRQPRKPFIIYEGDIYTYQDVDKRSSRVAHVFLNHSSLKKGDTVALLMS 113
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N P+FV +W GL+KLG + A +N N+R NSLL+CI G A + GA+L V+EI SL
Sbjct: 114 NEPDFVHVWFGLAKLGCVVAFLNTNIRSNSLLNCIRACGPRALVVGADLLGTVEEILPSL 173
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQ-ALSPLLSEVPTSPPSLSYRVG--VQDKLIYIYTSG 383
N+ ++ VP+ +L LS P P S+ V ++ +YI+TSG
Sbjct: 174 SENISVWG-------MKDSVPQGVISLKEKLSTSPDEPVPRSHHVVSLLKSTCLYIFTSG 226
Query: 384 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443
TTGLPKAAVIS + G A+ + G D Y LPLYH++ + I + G
Sbjct: 227 TTGLPKAAVISQLQV-LRGSAVLWAFGCTAHDIVYITLPLYHSSAAILGISGCVELGATC 285
Query: 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIW 503
V++KKFSAS ++SD KY TV QYIGE+CRYL ++ +K H VRL GNG+R +W
Sbjct: 286 VLKKKFSASQFWSDCKKYDVTVFQYIGELCRYLCKQSKREGEKDHKVRLAIGNGIRSDVW 345
Query: 504 SEFVDRFRIAQIGEFYGATEGMAAILD 530
EF+DRF ++ E Y ATE + ++
Sbjct: 346 REFLDRFGNIKVCELYAATESSISFMN 372
|
Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Thought to function as the predominant fatty acid protein transporter in heart. Homo sapiens (taxid: 9606) |
| >sp|O14975|S27A2_HUMAN Very long-chain acyl-CoA synthetase OS=Homo sapiens GN=SLC27A2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/373 (38%), Positives = 205/373 (54%), Gaps = 18/373 (4%)
Query: 185 LKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSN 244
LK A+ R +R + RR A+ TI F E A ++P+K +F + T QV+ SN
Sbjct: 34 LKVAAVGRRVR-SYGKRRPAR---TILRAFLEKARQTPHKPFLLFRDETLTYAQVDRRSN 89
Query: 245 RVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINI 303
+VA GL++GD VAL++ N P +V LWLGL KLG A +N+N+R SLLHC
Sbjct: 90 QVARALHDHLGLRQGDCVALLMGNEPAYVWLWLGLVKLGCAMACLNYNIRAKSLLHCFQC 149
Query: 304 AGVSAFIYGAELTDAVQEISTSLGSN---VKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360
G + EL AV+EI SL + + S + +TD S + + + EV
Sbjct: 150 CGAKVLLVSPELQAAVEEILPSLKKDDVSIYYVSRTSNTDGIDSFLDK-------VDEVS 202
Query: 361 TSPPSLSYR--VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFY 418
T P S+R V +YIYTSGTTGLPKAA+I++ R ++ G + + G + D Y
Sbjct: 203 TEPIPESWRSEVTFSTPALYIYTSGTTGLPKAAMITHQRIWY-GTGLTFVSGLKADDVIY 261
Query: 419 TPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLS 478
LP YH+A + I ++ G + +R KFSAS ++ D KY TV QYIGE+ RYL +
Sbjct: 262 ITLPFYHSAALLIGIHGCIVAGATLALRTKFSASQFWDDCRKYNVTVIQYIGELLRYLCN 321
Query: 479 TPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVS 538
+P+KP D+ H VRL GNGLR +W +FV RF I EFY ATEG ++ + +
Sbjct: 322 SPQKPNDRDHKVRLALGNGLRGDVWRQFVKRFGDICIYEFYAATEGNIGFMNYARKVGAV 381
Query: 539 AVSEGIKKALPSY 551
++K + +Y
Sbjct: 382 GRVNYLQKKIITY 394
|
Acyl-CoA synthetase probably involved in bile acid metabolism. Proposed to activate C27 precurors of bile acids to their CoA thioesters derivatives before side chain cleavage via peroxisomal beta-oxidation occurs. In vitro, activates 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanate (THCA), the C27 precursor of cholic acid deriving from the de novo synthesis from cholesterol. Does not utilize C24 bile acids as substrates. In vitro, also activates long- and branched-chain fatty acids and may have additional roles in fatty acid metabolism. May be involved in translocation of long-chain fatty acids (LFCA) across membranes. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| 332030012 | 998 | Long-chain fatty acid transport protein | 0.585 | 0.361 | 0.540 | 1e-117 | |
| 322789745 | 749 | hypothetical protein SINV_09772 [Solenop | 0.614 | 0.506 | 0.529 | 1e-115 | |
| 345493601 | 760 | PREDICTED: long-chain fatty acid transpo | 0.562 | 0.456 | 0.557 | 1e-113 | |
| 328696708 | 624 | PREDICTED: long-chain fatty acid transpo | 0.557 | 0.551 | 0.538 | 1e-111 | |
| 157104991 | 723 | AMP dependent ligase [Aedes aegypti] gi| | 0.635 | 0.542 | 0.528 | 1e-111 | |
| 328696706 | 737 | PREDICTED: long-chain fatty acid transpo | 0.557 | 0.466 | 0.538 | 1e-111 | |
| 307197649 | 789 | Long-chain fatty acid transport protein | 0.596 | 0.466 | 0.539 | 1e-110 | |
| 307186259 | 1086 | Long-chain fatty acid transport protein | 0.617 | 0.350 | 0.522 | 1e-110 | |
| 350405775 | 812 | PREDICTED: long-chain fatty acid transpo | 0.585 | 0.444 | 0.524 | 1e-110 | |
| 91082889 | 695 | PREDICTED: similar to AMP dependent liga | 0.593 | 0.526 | 0.526 | 1e-110 |
| >gi|332030012|gb|EGI69837.1| Long-chain fatty acid transport protein 4 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/368 (54%), Positives = 264/368 (71%), Gaps = 7/368 (1%)
Query: 168 KWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIF 227
+W Y+ K + D + L Y+R LW+A +K+ +ADIFR+H R PNK+ F
Sbjct: 418 RWFYVALKTISRD------CKGLIGYIRMLWSAHGHGRKNRNVADIFRQHVNRYPNKICF 471
Query: 228 MFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287
+FE+ EWT QQ+E +SN++A F G KKGD++AL+LENRPEF+ +WLGL+KLGV+T+L
Sbjct: 472 IFEDKEWTFQQIEDFSNKIATIFKTHGYKKGDAIALLLENRPEFIAIWLGLNKLGVVTSL 531
Query: 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
IN+NLR++SLLHCINIA A IYG E DAV +I++SL + + L+ + ++ S +
Sbjct: 532 INNNLRKSSLLHCINIAKCQALIYGTEFFDAVTDIASSLDAKLTLYRFGNHPNTMSVGL- 590
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
+ + L+ LL + P +P + + G DKL+YIYTSGTTGLPKAAVI+N RY F+ ++ Y
Sbjct: 591 KEKDLNTLLLDTPAAPLGVQEKSGYHDKLLYIYTSGTTGLPKAAVITNSRYIFITSSVRY 650
Query: 408 QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQ 467
R DR YT LPLYHTAGG M +G ALI+G VIRKKFSAS YF+D KYKCTVGQ
Sbjct: 651 MGTLRDSDRIYTSLPLYHTAGGIMAVGLALIYGHTTVIRKKFSASAYFADCIKYKCTVGQ 710
Query: 468 YIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527
YIGEMCRY+L+ P K ED+ HN+RL+FGNGLRPQIW EFV RF+I Q+ EFYGATEG A
Sbjct: 711 YIGEMCRYILAVPSKKEDQEHNIRLIFGNGLRPQIWDEFVKRFKIPQVLEFYGATEGNAN 770
Query: 528 ILDINKSL 535
+++I+ +
Sbjct: 771 VMNIDNKM 778
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322789745|gb|EFZ14911.1| hypothetical protein SINV_09772 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/393 (52%), Positives = 271/393 (68%), Gaps = 14/393 (3%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREH 217
F++G L KW Y+ FK D + L RY+R LW R A+K+ +AD+FRE+
Sbjct: 144 FVAGGRL---KWFYVAFKTTPRDL------KGLTRYVRLLWNIRGHAKKNRNVADVFREY 194
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
R NK+ F+FE+ EWT QQ+E +SN++A F G KKGD++AL+LENRPEFV +WLG
Sbjct: 195 VKRHSNKICFIFEDQEWTYQQIEDFSNKIATIFKTHGYKKGDAIALLLENRPEFVAIWLG 254
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 337
L+KLGVITALIN NLR++SL HCINIA A IYG + D +I++SL + + L+ +
Sbjct: 255 LNKLGVITALINTNLRKSSLSHCINIANCRALIYGIDFCD---DIASSLDTKLTLYRFGN 311
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+ S + + + L+ LL++ P + P++ + G DKL+YIYTSGTTGLPKAAVI+N R
Sbjct: 312 HPNPMSIAL-KEKDLNALLADTPATLPAVQEKSGYHDKLVYIYTSGTTGLPKAAVITNSR 370
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 457
Y F+ G++ Y DR YTPLPLYHTAGG M IGQAL+ G VIRKKFSAS YF+D
Sbjct: 371 YMFIAGSVHYIGALNNSDRIYTPLPLYHTAGGVMAIGQALLHGHTTVIRKKFSASAYFAD 430
Query: 458 VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGE 517
KYKCT+GQYIGEMCRY+LS P K ED+ HNVR++ GNGLRPQIW EFV RF+I Q+ E
Sbjct: 431 CIKYKCTIGQYIGEMCRYILSVPSKKEDQEHNVRMIVGNGLRPQIWEEFVKRFKIPQVLE 490
Query: 518 FYGATEGMAAILDI-NKSLDVSAVSEGIKKALP 549
FYGATEG A ++++ NK + +S I P
Sbjct: 491 FYGATEGNANVMNLDNKMGSIGFISRIIPSVYP 523
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345493601|ref|XP_001603923.2| PREDICTED: long-chain fatty acid transport protein 4-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 257/348 (73%), Gaps = 1/348 (0%)
Query: 188 RALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVA 247
+A+ RY+ LW + +KD ++AD+FR+H ++P K +FE+ EWT QQ+E YSN+VA
Sbjct: 173 KAISRYVCLLWTIKGHEKKDRSVADVFRQHVAKNPTKPCLVFEDQEWTFQQIEDYSNKVA 232
Query: 248 NFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS 307
F + G KKGD+VAL+LENRPE+VC+WLGLSKLG+IT LIN NLR++SLLH +N+AG
Sbjct: 233 QVFKSHGYKKGDAVALLLENRPEYVCIWLGLSKLGIITPLINTNLRKSSLLHSVNVAGAQ 292
Query: 308 AFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367
A IYGA+L +AV++I+ SL + + L+ S D + + + + L L++ ++ P +
Sbjct: 293 ALIYGADLAEAVKDIAPSLDAKLALYRLS-DVANLPTDGLKEKELGNFLADASSAAPVVQ 351
Query: 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA 427
+ DKL+YIYTSGTTGLPKAAVI+N R+ F+ I + F + D+FYTPLPLYHTA
Sbjct: 352 DKGCYGDKLMYIYTSGTTGLPKAAVITNSRFMFIASGIHFLASFCSSDKFYTPLPLYHTA 411
Query: 428 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 487
GG M IGQAL+ G VVIRKKFSAS YFSD KY CTV QYIGEMCRY+L+ P KPEDK
Sbjct: 412 GGVMTIGQALLHGATVVIRKKFSASAYFSDCIKYNCTVSQYIGEMCRYILAVPPKPEDKK 471
Query: 488 HNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSL 535
HN+R++FGNGLRPQIW EFV RF I Q+ EFYGATEG A I++++ ++
Sbjct: 472 HNIRVIFGNGLRPQIWREFVARFEIPQVCEFYGATEGNANIVNVDNTV 519
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328696708|ref|XP_003240103.1| PREDICTED: long-chain fatty acid transport protein 4-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 252/349 (72%), Gaps = 5/349 (1%)
Query: 188 RALQRYLRFLWAARRVAQKDLTIADIFREHAVR-SPNKVIFMFENTEWTAQQVEAYSNRV 246
RAL RY FL+ A+++ + + T+AD+F+ V+ +P+KV+F FE+ EWTA QVE YSN+V
Sbjct: 38 RALCRYYYFLYTAKKLGKNNWTVADVFKHTVVKNTPHKVLFAFEDKEWTALQVEEYSNKV 97
Query: 247 ANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGV 306
AN L +G KKGD V L++ENRPEFV +WLG+SK+G++TALIN+N R SLLH I +A
Sbjct: 98 ANVMLERGFKKGDVVGLLMENRPEFVGIWLGMSKVGIVTALINYNQRMVSLLHSIKVANC 157
Query: 307 SAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
++ IYGAEL+ + +I L +++KLF +S S+ P L+ L + S P+
Sbjct: 158 TSLIYGAELSSDIDDIKGDLDNDIKLFKFS----STPPPANDGTYLNHFLDKASPSAPNP 213
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
+ G DKL+YIYTSGTTG PKAA+I+N RY F+ GA AYQ+G + DRFYTP+PLYHT
Sbjct: 214 PEKPGYNDKLLYIYTSGTTGYPKAAIITNVRYIFIAGAYAYQVGLKYSDRFYTPMPLYHT 273
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
A G MCIGQ+L++GC VIRKKFSAS YF D+ KY CT QYIGEMCRY+L+TP K +D
Sbjct: 274 AAGIMCIGQSLLYGCTTVIRKKFSASGYFQDISKYNCTAAQYIGEMCRYILATPPKADDT 333
Query: 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSL 535
H +R++FGNGL+PQIW EFV RF + ++ EFYG+TEG A I + + +
Sbjct: 334 NHKLRIIFGNGLKPQIWKEFVSRFNVPRVAEFYGSTEGNANIANTDNTF 382
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157104991|ref|XP_001648665.1| AMP dependent ligase [Aedes aegypti] gi|108884157|gb|EAT48382.1| AAEL000572-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/405 (52%), Positives = 273/405 (67%), Gaps = 13/405 (3%)
Query: 151 FEIGDSAFLSGDLLVM---DKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKD 207
+E G A L G L V+ KW + Y T P +AL RY++ L ++ +++
Sbjct: 98 WEFGLPAVLIGLLAVLIASGKWRWFYI---AAVTIPR-DVKALARYVKLLMLVKKYNRQN 153
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
TIADIF E+ + P KV +FE+ +WT ++V YSNRVAN FL K+G+ V LMLEN
Sbjct: 154 ATIADIFAEYVAKQPEKVCLIFEDRKWTFREVNDYSNRVANVFLNNKYKRGEVVGLMLEN 213
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
RPEFV +WLGLSKLGVI LINHNLR+N+LLH +N+A A IYG L DAVQEI SL
Sbjct: 214 RPEFVAMWLGLSKLGVIVPLINHNLRKNALLHSVNVANCKALIYGESLRDAVQEIKESLP 273
Query: 328 SNVKLFSWSPDTDSSSSPVPR-SQALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTT 385
S+++LF ++ D+ PV + L+ +L P+ + + DKL+YIYTSGTT
Sbjct: 274 SSLELFQFN---DAVQQPVLDIAHDLASMLQNASKEQPTANVNKPDHHDKLLYIYTSGTT 330
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
GLPKAAVI++ R+ F+ AI GFR D FYTPLPLYHTAGG M IGQAL+FG VVI
Sbjct: 331 GLPKAAVITHSRFVFITAAIHMVAGFRNDDIFYTPLPLYHTAGGMMSIGQALLFGATVVI 390
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
RKKFSAS YF+D K CTVGQYIGEMCRY+L+TP+ DKAH VRL+FGNGLRPQIW +
Sbjct: 391 RKKFSASQYFADCKKNNCTVGQYIGEMCRYILATPDSGTDKAHKVRLIFGNGLRPQIWPQ 450
Query: 506 FVDRFRIAQIGEFYGATEGMAAILDINKSLD-VSAVSEGIKKALP 549
FV+RF I ++ EFYGATEG A I++I+ ++ + VS I + P
Sbjct: 451 FVERFNIPRVAEFYGATEGNANIVNIDNTVGAIGFVSRIIPQVYP 495
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328696706|ref|XP_001942878.2| PREDICTED: long-chain fatty acid transport protein 4-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/349 (53%), Positives = 252/349 (72%), Gaps = 5/349 (1%)
Query: 188 RALQRYLRFLWAARRVAQKDLTIADIFREHAVR-SPNKVIFMFENTEWTAQQVEAYSNRV 246
RAL RY FL+ A+++ + + T+AD+F+ V+ +P+KV+F FE+ EWTA QVE YSN+V
Sbjct: 151 RALCRYYYFLYTAKKLGKNNWTVADVFKHTVVKNTPHKVLFAFEDKEWTALQVEEYSNKV 210
Query: 247 ANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGV 306
AN L +G KKGD V L++ENRPEFV +WLG+SK+G++TALIN+N R SLLH I +A
Sbjct: 211 ANVMLERGFKKGDVVGLLMENRPEFVGIWLGMSKVGIVTALINYNQRMVSLLHSIKVANC 270
Query: 307 SAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
++ IYGAEL+ + +I L +++KLF +S S+ P L+ L + S P+
Sbjct: 271 TSLIYGAELSSDIDDIKGDLDNDIKLFKFS----STPPPANDGTYLNHFLDKASPSAPNP 326
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
+ G DKL+YIYTSGTTG PKAA+I+N RY F+ GA AYQ+G + DRFYTP+PLYHT
Sbjct: 327 PEKPGYNDKLLYIYTSGTTGYPKAAIITNVRYIFIAGAYAYQVGLKYSDRFYTPMPLYHT 386
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
A G MCIGQ+L++GC VIRKKFSAS YF D+ KY CT QYIGEMCRY+L+TP K +D
Sbjct: 387 AAGIMCIGQSLLYGCTTVIRKKFSASGYFQDISKYNCTAAQYIGEMCRYILATPPKADDT 446
Query: 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSL 535
H +R++FGNGL+PQIW EFV RF + ++ EFYG+TEG A I + + +
Sbjct: 447 NHKLRIIFGNGLKPQIWKEFVSRFNVPRVAEFYGSTEGNANIANTDNTF 495
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307197649|gb|EFN78828.1| Long-chain fatty acid transport protein 4 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/378 (53%), Positives = 262/378 (69%), Gaps = 10/378 (2%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREH 217
F++G L KW Y+ + D + +LR LW R +K+ ++AD+FR++
Sbjct: 181 FVAGGRL---KWFYVALRTLPRDI------KGATGFLRLLWFIRGHERKNRSVADVFRQY 231
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
R PNK+ F+ EN EWT QQ+E +SN++A F G KKGD+VAL L+NRPEFV +WLG
Sbjct: 232 VSRHPNKICFICENQEWTYQQIEDFSNKIATIFKMHGYKKGDAVALFLDNRPEFVGIWLG 291
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 337
LSKLGVIT+LIN NLR+NSLLH INIA A IYGAEL DAV +I++SL + L+ +
Sbjct: 292 LSKLGVITSLINTNLRKNSLLHSINIAKCQALIYGAELFDAVADIASSLDVKLALYRFGS 351
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
++ S + + + L+ +L EV +PP++ + G +L+YIYTSGTTGLPKAAVI++ R
Sbjct: 352 HPNAMSVGL-KEKDLNNILLEVSAAPPTIPEKCGYNHELLYIYTSGTTGLPKAAVITSAR 410
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 457
Y F+ ++ R DR YT LPLYHTAGG M IGQAL+ G VIRKKFSAS+YFSD
Sbjct: 411 YMFIASSVHVFGMLRNSDRIYTSLPLYHTAGGVMAIGQALLHGHTTVIRKKFSASSYFSD 470
Query: 458 VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGE 517
KYKCTV QYIGEMCRY+LS K EDK HNVRL+ GNGLRPQIW+EFV RF I Q+ E
Sbjct: 471 CIKYKCTVAQYIGEMCRYVLSVQPKKEDKEHNVRLIVGNGLRPQIWNEFVKRFNIPQVLE 530
Query: 518 FYGATEGMAAILDINKSL 535
FYGATEG A I++I+ +
Sbjct: 531 FYGATEGNANIMNIDNKV 548
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186259|gb|EFN71922.1| Long-chain fatty acid transport protein 4 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/394 (52%), Positives = 271/394 (68%), Gaps = 13/394 (3%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREH 217
F++G L +W Y+ + T P + L Y+ L + R +K+ +ADIFRE
Sbjct: 478 FVAGGRL---RWFYVALR-----TLPR-DCKGLIAYITMLLSIRGHEKKNRNVADIFREW 528
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
R PNKV F+FE+ EWT QQ+E +SN++A F G KKGD+VAL+LENRPEFV +WLG
Sbjct: 529 VNRHPNKVCFIFEDQEWTFQQIEDFSNKIATIFKTHGYKKGDAVALLLENRPEFVGIWLG 588
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 337
LSKLGVIT LIN NLR++SLLH +NIA A IYGAE + V +I++SL + + L+ +
Sbjct: 589 LSKLGVITPLINTNLRKSSLLHSLNIAKCQALIYGAEFFNVVTDIASSLDAKLALYRFGS 648
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
++ S + + + L+ +L + +PP + + G DKL+YIYTSGTTGLPKAA+I+N R
Sbjct: 649 HPNAMSVGL-KEKDLNTILMDTSAAPPVVQEKGGHNDKLLYIYTSGTTGLPKAAIITNSR 707
Query: 398 YYFLGGAIAYQIGF-RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFS 456
Y F+ A+ Y +GF R DR YTPLPLYHTAGG M +GQAL+FG V+RKKFSAS YFS
Sbjct: 708 YVFIAAAVHY-VGFLRNSDRIYTPLPLYHTAGGVMAVGQALLFGHTTVMRKKFSASAYFS 766
Query: 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIG 516
D KYKCTV QYIGEMCRY+L+ K E++ HNVR++FGNGLRPQIW EFV RF I ++
Sbjct: 767 DCLKYKCTVAQYIGEMCRYVLAVSPKKENQEHNVRMIFGNGLRPQIWEEFVKRFNILKVL 826
Query: 517 EFYGATEGMAAILDI-NKSLDVSAVSEGIKKALP 549
EFYGATEG + I+++ NK+ V +S I P
Sbjct: 827 EFYGATEGNSNIMNVDNKTGAVGFISRIIPSVYP 860
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350405775|ref|XP_003487546.1| PREDICTED: long-chain fatty acid transport protein 4-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/368 (52%), Positives = 251/368 (68%), Gaps = 7/368 (1%)
Query: 168 KWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIF 227
+W Y+ K D A+ RY++ LW R +K+ +IAD+FR+H R PNKV F
Sbjct: 211 RWFYVALKTAPRDLV------AITRYIKVLWIIRSHERKNRSIADVFRQHVSRHPNKVCF 264
Query: 228 MFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287
+FE+ EWT QQVE YSN+VA F G +KGD + ++LENR EF+ LWLGLSKLGVI L
Sbjct: 265 IFEDQEWTYQQVEDYSNKVATIFKTYGYRKGDVIGILLENRVEFIALWLGLSKLGVIIPL 324
Query: 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
+N NLR+ +L H IN++ A IYGA+ TDA+ +I SL L+ +S +S +
Sbjct: 325 LNTNLRKTALQHSINVSKCQALIYGADFTDAISDIIDSLDPKFPLYRIGSLPNSKTSKL- 383
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
L L++ V ++ P + D+L+YI+TSGTTGLPKAAVI+N R+ F+ I
Sbjct: 384 NDNDLDTLMTNVSSAAPVFEEKGAYHDQLVYIFTSGTTGLPKAAVITNSRFMFMATGIFM 443
Query: 408 QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQ 467
F++ DR YTPLPLYHTAGG M +G AL+ G VVIRKKFSAS YF++ KY CTVGQ
Sbjct: 444 LAKFKSSDRIYTPLPLYHTAGGVMAVGAALLHGATVVIRKKFSASAYFAECIKYNCTVGQ 503
Query: 468 YIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527
YIGEMCRY+L+ P KPEDK H +R+MFGNGLRPQIW EFV+RF I+QI EFYGATEG A
Sbjct: 504 YIGEMCRYILAVPPKPEDKQHKIRVMFGNGLRPQIWREFVERFNISQIAEFYGATEGNAN 563
Query: 528 ILDINKSL 535
I++I+ ++
Sbjct: 564 IVNIDNTV 571
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91082889|ref|XP_971856.1| PREDICTED: similar to AMP dependent ligase [Tribolium castaneum] gi|270007071|gb|EFA03519.1| hypothetical protein TcasGA2_TC013521 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/372 (52%), Positives = 261/372 (70%), Gaps = 6/372 (1%)
Query: 164 LVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPN 223
L KW + Y T +AL +YLR L + ++D+T+ADIFR + R PN
Sbjct: 88 LAAGKWRWFYVALMTAPR----DIKALYKYLRLLIQIKSWQREDVTLADIFRRNVKRHPN 143
Query: 224 KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283
K +FE+ EW+ Q+E YSN+VAN F + G KKGD VAL LENRPEF+ LWLGLSKLGV
Sbjct: 144 KACILFEDQEWSFAQLEEYSNKVANVFKSHGYKKGDVVALFLENRPEFIALWLGLSKLGV 203
Query: 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS 343
IT LIN N R +SL+H I IAG A I+G++L+DA+ ++ + + V + TD S+
Sbjct: 204 ITPLINTNQRLDSLVHSITIAGSQAVIFGSDLSDAIIDVFEKIEAKVTFYQLCI-TDKSN 262
Query: 344 SPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG 403
R + L L+++ P +PPS+S ++ D+L+YIYTSGTTGLPKAAVIS+ RY F+
Sbjct: 263 VD-QRFRDLRQLINDAPPTPPSISEKLHHHDRLVYIYTSGTTGLPKAAVISSSRYIFIAA 321
Query: 404 AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKC 463
AI + GF++ D FYTPLPLYHTAGG M +GQ LI+G +VIRKKFSAS YF D KYKC
Sbjct: 322 AIHWLSGFKSSDCFYTPLPLYHTAGGCMSVGQMLIYGATLVIRKKFSASAYFPDCEKYKC 381
Query: 464 TVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
T+ QYIGEMCRY+L+ P KP D H++R+++GNGLRPQIW EFV+RF+I ++ EFYGATE
Sbjct: 382 TIAQYIGEMCRYILAVPPKPSDTQHHLRMIYGNGLRPQIWCEFVERFKIPKVAEFYGATE 441
Query: 524 GMAAILDINKSL 535
G A I++++ ++
Sbjct: 442 GNANIVNVDNTV 453
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 617 | ||||||
| FB|FBgn0021953 | 705 | Fatp "Fatty acid (long chain) | 0.619 | 0.541 | 0.484 | 7.6e-118 | |
| ZFIN|ZDB-GENE-050417-248 | 643 | slc27a4 "solute carrier family | 0.502 | 0.482 | 0.482 | 2e-100 | |
| ZFIN|ZDB-GENE-061013-672 | 648 | slc27a1b "solute carrier famil | 0.641 | 0.611 | 0.407 | 2.9e-99 | |
| UNIPROTKB|E1BT18 | 654 | SLC27A4 "Uncharacterized prote | 0.528 | 0.498 | 0.471 | 4.7e-97 | |
| UNIPROTKB|Q0VCQ2 | 643 | SLC27A4 "Solute carrier family | 0.529 | 0.508 | 0.472 | 1.3e-96 | |
| ZFIN|ZDB-GENE-050320-112 | 647 | slc27a1a "solute carrier famil | 0.562 | 0.536 | 0.458 | 4.2e-96 | |
| UNIPROTKB|G3V7V3 | 643 | Slc27a4 "Solute carrier family | 0.578 | 0.555 | 0.442 | 1.3e-94 | |
| MGI|MGI:1347347 | 643 | Slc27a4 "solute carrier family | 0.578 | 0.555 | 0.442 | 1.6e-94 | |
| UNIPROTKB|J9P1R3 | 701 | SLC27A4 "Uncharacterized prote | 0.551 | 0.485 | 0.446 | 5.4e-94 | |
| FB|FBgn0034999 | 687 | CG3394 [Drosophila melanogaste | 0.606 | 0.544 | 0.423 | 8.9e-94 |
| FB|FBgn0021953 Fatp "Fatty acid (long chain) transport protein" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 189/390 (48%), Positives = 245/390 (62%)
Query: 163 LLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSP 222
LL W + Y T AL Y++ L +R + + T+AD+F + P
Sbjct: 94 LLTKPGWRWFYIAGATASR----DLTALWAYIKLLRYTKRHERLNYTVADVFERNVQAHP 149
Query: 223 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
+KV + E WT +QV ++N+VAN AQG KKGD VAL+LENR E+V WLGLSK+G
Sbjct: 150 DKVAVVSETQRWTFRQVNEHANKVANVLQAQGYKKGDVVALLLENRAEYVATWLGLSKIG 209
Query: 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXX 342
VIT LIN NLR SLLH I +A SA IYG + +AV +++ L +N+ LF
Sbjct: 210 VITPLINTNLRGPSLLHSITVAHCSALIYGEDFLEAVTDVAKDLPANLTLFQFNNENNNS 269
Query: 343 XXXXXX--XXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 400
LL+ P+ + +V DKL+YIYTSGTTGLPKAAVIS+ RY F
Sbjct: 270 ETEKNIPQAKNLNALLTTASYEKPNKT-QVNHHDKLVYIYTSGTTGLPKAAVISHSRYLF 328
Query: 401 LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCK 460
+ I Y +GF+ +D FYTPLPLYHTAGG MC+GQ+++FG V IRKKFSASNYF+D K
Sbjct: 329 IAAGIHYTMGFQEEDIFYTPLPLYHTAGGIMCMGQSVLFGSTVSIRKKFSASNYFADCAK 388
Query: 461 YKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYG 520
Y T+GQYIGEM RY+L+T D+ H VRL+FGNGLRPQIW +FV RF IA++GEFYG
Sbjct: 389 YNATIGQYIGEMARYILATKPSEYDQKHRVRLVFGNGLRPQIWPQFVQRFNIAKVGEFYG 448
Query: 521 ATEGMAAILDINKSLD-VSAVSEGIKKALP 549
ATEG A I++ + ++ + VS + K P
Sbjct: 449 ATEGNANIMNHDNTVGAIGFVSRILPKIYP 478
|
|
| ZFIN|ZDB-GENE-050417-248 slc27a4 "solute carrier family 27 (fatty acid transporter), member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
Identities = 154/319 (48%), Positives = 204/319 (63%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ +F + + NK +FE T+ W+ ++++ YSNRVANF L QG ++GD VAL +E
Sbjct: 75 TVPKLFAKSVKKYGNKTALIFEGTDEKWSFKELDEYSNRVANFLLQQGFREGDVVALFME 134
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
NR ++V LWLG++K+GV ALIN NLR +L+HC+NI+ A ++G+ELT+A+ E+ +S+
Sbjct: 135 NRHQYVGLWLGMAKIGVEAALINFNLRLEALVHCVNISSAKAVVFGSELTEAMCEVHSSM 194
Query: 327 GSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
G VKLF PLL T P R D+L YIYTSGTTG
Sbjct: 195 GKTVKLFVSGEWDPKRVPVGTEHLD--PLLETTSTIQPKQPDR-SFTDRLFYIYTSGTTG 251
Query: 387 LPKAAVISNHRYYFLGGAIAYQIGFRTK--DRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444
+PKAA++ + RYY + + Y GFR K D Y LPLYH+AG + IGQ LI G VV
Sbjct: 252 MPKAAIVVHSRYYRMAALVYY--GFRMKPEDVLYDCLPLYHSAGNIVGIGQGLIHGMTVV 309
Query: 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWS 504
IRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P K ++ H VR+ GNGLR IW
Sbjct: 310 IRKKFSASKFWDDCIKYNCTIVQYIGEICRYLLNQPRKDTERKHKVRMALGNGLRQSIWE 369
Query: 505 EFVDRFRIAQIGEFYGATE 523
EF +RF + QI EFYGATE
Sbjct: 370 EFTNRFNVPQIAEFYGATE 388
|
|
| ZFIN|ZDB-GENE-061013-672 slc27a1b "solute carrier family 27 (fatty acid transporter), member 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 2.9e-99, Sum P(2) = 2.9e-99
Identities = 167/410 (40%), Positives = 235/410 (57%)
Query: 159 LSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHA 218
L G L W ++Y RT LQ LR + R+ + TI +F +
Sbjct: 33 LLGVYLCSGGWRFVYVAVRTAKR----DLIGLQVLLRVKFYMRQYIRNRSTIPSLFAQRV 88
Query: 219 VRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
P K + E++ W+ +++ SN VA + LAQG + GD VA+ +E+RP+ V LWL
Sbjct: 89 ALHPEKAALVDESSGEVWSFSELDRRSNAVAQWVLAQGWRSGDVVAIFMESRPQMVALWL 148
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXX 336
G++K+GV ALIN NLR++SL+HC+ ++G ++GAEL D V E+ SL S + LF
Sbjct: 149 GMAKVGVEPALINFNLRRDSLIHCMGVSGACGMVFGAELLDVVLEVRESLRS-LSLFSCG 207
Query: 337 XXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
LLS+ P +PP++++ G D+L YIYTSGTTGLPKAA++ +
Sbjct: 208 SAPAEMLDSLSAADLDA-LLSKSPETPPAVAHNKGFNDRLFYIYTSGTTGLPKAAIVVHS 266
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFS 456
RYY + Y G + D Y LPLYH+AG + +GQ L+ G VVIR+KFSAS ++
Sbjct: 267 RYYRIAAFSYYSFGLQPDDVVYCCLPLYHSAGNIIGVGQCLLHGLTVVIRRKFSASRFWD 326
Query: 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIG 516
D KY CTV QYIGE+CRYLLS P +P + H VR+ GNGLRP +W F+ RF + +IG
Sbjct: 327 DCVKYNCTVVQYIGEICRYLLSQPVRPSESLHRVRVAMGNGLRPNVWESFMKRFSVKRIG 386
Query: 517 EFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566
EFYGATE ++ +++ + + + LPS P IR LR E T
Sbjct: 387 EFYGATECNCSLANMDNKVGACGFNSVV---LPS-VYP--IRLLRADEDT 430
|
|
| UNIPROTKB|E1BT18 SLC27A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
Identities = 157/333 (47%), Positives = 208/333 (62%)
Query: 194 LRFLWAA-RRVAQKDLTIADIFREHAVRSPNKVIFMFENT--EWTAQQVEAYSNRVANFF 250
LR W R V +K+ TIA IF+ A + P K +F+ T WT +Q++ YSN+VANFF
Sbjct: 71 LRVKWQVWRHVREKN-TIAKIFQRTASKCPEKTALIFQGTGESWTFRQLDEYSNQVANFF 129
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
QG + GD VAL +E+R ++V LWLGL+K+GV TAL+N NLR +LLHCI I+ A +
Sbjct: 130 HGQGFRSGDVVALFMESRNQYVGLWLGLAKIGVETALVNSNLRMEALLHCITISNSKAVV 189
Query: 311 YGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRV 370
+G E+ +A++E+ +S+ +V LF PLL P +
Sbjct: 190 FGVEMMEAMKEVQSSMEKSVHLFWSGEGSPESALSGAKHLD--PLLQTALRQQPDPPEK- 246
Query: 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430
G DKL YIYTSGTTG+PKAA++ N RY+ + + Y R D Y LPLYH AG
Sbjct: 247 GFLDKLFYIYTSGTTGMPKAAIVVNCRYFRMASLVFYGFRMRPDDVMYDCLPLYHAAGNI 306
Query: 431 MCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNV 490
+ IGQ L+ G VVIRKKFSAS+++ D KY CT+ QYIGE+CRYLL+ P + ++ H V
Sbjct: 307 VGIGQCLLQGMTVVIRKKFSASHFWEDCVKYNCTIVQYIGEICRYLLNQPYQEVERQHRV 366
Query: 491 RLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
R+ GNGLR IW EF+ RF IAQ+ EFYGATE
Sbjct: 367 RMALGNGLRASIWREFMARFGIAQVAEFYGATE 399
|
|
| UNIPROTKB|Q0VCQ2 SLC27A4 "Solute carrier family 27 (Fatty acid transporter), member 4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 755 (270.8 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 157/332 (47%), Positives = 202/332 (60%)
Query: 194 LRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFL 251
LR RR ++ T+ +F R P+K +FE T+ WT +Q++ YSN VANF
Sbjct: 60 LRVKAKVRRYLRERRTVPILFAATVQRHPDKTALIFEGTDTHWTFRQLDNYSNSVANFLQ 119
Query: 252 AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY 311
AQGL GD VAL +ENR EFV LWLG++KLGV ALIN NLR+++LLHC+ + A ++
Sbjct: 120 AQGLASGDVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALLHCLTSSQARALVF 179
Query: 312 GAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVG 371
G+E+ AV EI +L ++ F PLL + P PS + G
Sbjct: 180 GSEMAPAVLEIHANLDPSLNFFCSGPWEPSTVPAGTKHLD--PLLEDAPKHQPSRPNK-G 236
Query: 372 VQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
DKL YIYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG +
Sbjct: 237 FVDKLFYIYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDIVYDCLPLYHSAGNIV 296
Query: 432 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 491
IGQ LI G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR
Sbjct: 297 GIGQCLIHGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAEGQHRVR 356
Query: 492 LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ GNGLR IW++F RF I Q+ EFYGATE
Sbjct: 357 MALGNGLRQCIWTDFCSRFHIPQVAEFYGATE 388
|
|
| ZFIN|ZDB-GENE-050320-112 slc27a1a "solute carrier family 27 (fatty acid transporter), member 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 769 (275.8 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 164/358 (45%), Positives = 212/358 (59%)
Query: 169 WGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFM 228
W YLY RT L LR A + TI IF + R P+K +
Sbjct: 41 WRYLYVVVRTAKR----DINGLYVLLRVKLALWHYMRNRNTIPSIFAQTVARHPDKPALV 96
Query: 229 FENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286
+E T WT Q++ SN VA++ L+QG GD VAL +E+RP V LWLGL+K+GV A
Sbjct: 97 YEATGETWTFSQLDQISNAVAHWALSQGWTSGDVVALFMESRPLQVALWLGLAKVGVEAA 156
Query: 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXX 346
LIN NLR++SLLHC+ ++ ++GAEL DAV E+S SL + F
Sbjct: 157 LINFNLRRDSLLHCVGVSASRGIVFGAELADAVSEVSHSLSQTMVRFSTGDLKPDLMAAL 216
Query: 347 XXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA 406
P+L+ P PPS + G D L YIYTSGTTGLPKAA++ + RYY + A
Sbjct: 217 KCQPLD-PILASAPRHPPSCTVSKGFNDHLFYIYTSGTTGLPKAAIVVHSRYYRIA-AFG 274
Query: 407 YQIGFRTK--DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
Y + FR + D Y LPLYH+AG M +GQ LI G VV+++KFSAS ++ D K+ CT
Sbjct: 275 Y-LSFRMRPDDIIYDCLPLYHSAGNIMGVGQCLIHGLTVVVKRKFSASRFWEDCIKHNCT 333
Query: 465 VGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGAT 522
V QYIGE+CRYLL+ P +P ++ H VRL GNGLRP +W FV+RFR+ QIGEFYGAT
Sbjct: 334 VVQYIGEICRYLLAQPVRPSERQHRVRLAVGNGLRPSVWEAFVERFRVKQIGEFYGAT 391
|
|
| UNIPROTKB|G3V7V3 Slc27a4 "Solute carrier family 27 (Fatty acid transporter), member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 163/368 (44%), Positives = 217/368 (58%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKG 258
RR Q+ T+ +F R P+K +FE NT WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RRYLQERKTVPLLFASVVRRHPDKTALIFEGTNTHWTFRQLDDYSSSVANFLQARGLVSG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
+ VAL +ENR EFV LWLG++KLGV ALIN NLR+++L HC++ + A I+G+E+ A
Sbjct: 127 NVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALRHCLDTSKARALIFGSEMASA 186
Query: 319 VQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIY 378
V EI L + LF PLL + P PS+ + G DKL Y
Sbjct: 187 VYEIQAILDPTLTLFCSGSWEPSTVPANTEHLD--PLLEDAPKHLPSIPDK-GFTDKLFY 243
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
IYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ ++
Sbjct: 244 IYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDIVYDCLPLYHSAGNIVGIGQCVL 303
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ GNGL
Sbjct: 304 HGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAESRHKVRMALGNGL 363
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIR 558
R IW++F RF I Q+ EFYGATE ++ + + V A G + S+ P IR
Sbjct: 364 RQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSQ--VGAC--GFNSRILSFVYP--IR 417
Query: 559 CLREVEMT 566
+R E T
Sbjct: 418 LVRVNEDT 425
|
|
| MGI|MGI:1347347 Slc27a4 "solute carrier family 27 (fatty acid transporter), member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
Identities = 163/368 (44%), Positives = 217/368 (58%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
RR Q+ T+ +F R P+K +FE T+ WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RRYLQERKTVPLLFASMVQRHPDKTALIFEGTDTHWTFRQLDEYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
+ VAL +ENR EFV LWLG++KLGV ALIN NLR+++L HC++ + A I+G+E+ A
Sbjct: 127 NVVALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALRHCLDTSKARALIFGSEMASA 186
Query: 319 VQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ EI SL + LF PLL + P PS + G DKL Y
Sbjct: 187 ICEIHASLEPTLSLFCSGSWEPSTVPVSTEHLD--PLLEDAPKHLPSHPDK-GFTDKLFY 243
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
IYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ L+
Sbjct: 244 IYTSGTTGLPKAAIVVHSRYYRMASLVYYGFRMRPDDIVYDCLPLYHSAGNIVGIGQCLL 303
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ GNGL
Sbjct: 304 HGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAESRHKVRMALGNGL 363
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIR 558
R IW++F RF I Q+ EFYGATE ++ + + V A G + S+ P IR
Sbjct: 364 RQSIWTDFSSRFHIPQVAEFYGATECNCSLGNFDSR--VGAC--GFNSRILSFVYP--IR 417
Query: 559 CLREVEMT 566
+R E T
Sbjct: 418 LVRVNEDT 425
|
|
| UNIPROTKB|J9P1R3 SLC27A4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 5.4e-94, Sum P(2) = 5.4e-94
Identities = 154/345 (44%), Positives = 206/345 (59%)
Query: 201 RRVAQKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKG 258
RR ++ T+ +F R P+K +FE T+ WT +Q++ YS+ VANF A+GL G
Sbjct: 67 RRYLREQRTVPILFASMVQRHPDKTALIFEGTDTHWTFRQLDDYSSSVANFLQARGLASG 126
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D AL +ENR EFV LWLG++KLGV ALIN NLR+++L HC+ + I+G+E+ A
Sbjct: 127 DVAALFMENRNEFVGLWLGMAKLGVEAALINTNLRRDALCHCLTTSQARVLIFGSEMAPA 186
Query: 319 VQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ EI SL ++ LF PLL + P PS + G DKL Y
Sbjct: 187 IFEIQASLDPSLSLFCSGPWEPSTLPASTEHLD--PLLEDAPKHLPSRPDK-GFTDKLFY 243
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
IYTSGTTGLPKAA++ + RYY + + Y R D Y LPLYH+AG + IGQ L+
Sbjct: 244 IYTSGTTGLPKAAIVVHSRYYRMAALVYYGFRMRPDDIVYDCLPLYHSAGNIVGIGQCLL 303
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G VVIRKKFSAS ++ D KY CT+ QYIGE+CRYLL+ P + + H VR+ GNGL
Sbjct: 304 HGMTVVIRKKFSASRFWDDCIKYNCTIVQYIGELCRYLLNQPPREAEHQHRVRMALGNGL 363
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEG 543
R IW++F RF I Q+ EFYGATE ++ + + + AV G
Sbjct: 364 RQSIWTDFSSRFHIPQVAEFYGATECNCSVGNFDSQVGSGAVEGG 408
|
|
| FB|FBgn0034999 CG3394 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
Identities = 165/390 (42%), Positives = 232/390 (59%)
Query: 187 SRALQRYLRFLWAARRVAQKD---LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYS 243
SR L+ + RF+ + +KD T+A F++ A R P K F+ ++ + + +S
Sbjct: 89 SRDLKAFQRFVALNIYLLRKDRGGFTVARCFQDQARRRPKKTCFVMDDRHLSFAEALEFS 148
Query: 244 NRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINI 303
++A +F +GL++GD VAL++E R E+ C+WLGLS+LGVITALIN NLR SLLH I +
Sbjct: 149 QKIAGYFSDRGLERGDCVALLMETRLEYPCIWLGLSQLGVITALINSNLRGESLLHSIKV 208
Query: 304 AGVSAFIYGAELTDAVQEISTSLG-SNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTS 362
A A I G+EL D + + V ++ L++ + T
Sbjct: 209 ANAKALIVGSELLDVLVSLREKEQLDEVPIYQYTDDEVRGVAGHDLLPGAVDLVTALKTQ 268
Query: 363 P----PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFY 418
PS + KL+Y+YTSGTTGLPKAAVI+N R+ F+ Y + + D Y
Sbjct: 269 KKLELPSAVCPGEARSKLLYVYTSGTTGLPKAAVITNLRFLFMSAGSYYMLKMSSDDVVY 328
Query: 419 TPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLS 478
PLPLYHTAGG + +G A++ G VV+RKKFSA N++ D ++ CTV QYIGE+CRYLL+
Sbjct: 329 DPLPLYHTAGGIVGVGNAILNGSTVVLRKKFSARNFWLDCDRHNCTVAQYIGELCRYLLA 388
Query: 479 TPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVS 538
T P+ + HN+RLM+GNGLRPQIWS+FV RF I IGE YGATEG + +++I V
Sbjct: 389 TSYSPDQQKHNLRLMYGNGLRPQIWSQFVRRFGIPHIGEIYGATEGNSNLINITNR--VG 446
Query: 539 AVSEGIKKALPSYARPLF-IRCLREVEMTG 567
A+ G +P Y L+ ++ LR E TG
Sbjct: 447 AI--GF---VPVYGSSLYPVQVLRCDEYTG 471
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 1e-133 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-130 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 4e-92 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-89 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-72 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 4e-59 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-58 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 5e-57 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 7e-57 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-40 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-35 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 7e-35 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-31 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-30 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 3e-30 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 5e-30 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-29 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 5e-29 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-28 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 1e-27 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 7e-27 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-25 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-25 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 2e-23 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-22 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 6e-22 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-21 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-20 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-20 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 1e-19 | |
| PRK07868 | 994 | PRK07868, PRK07868, acyl-CoA synthetase; Validated | 1e-19 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 1e-18 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-18 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-18 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-18 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-18 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 5e-18 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-17 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 8e-17 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 9e-17 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-16 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-16 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-16 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 4e-16 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-16 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 7e-16 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 8e-16 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 9e-16 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 1e-15 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-15 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 5e-15 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 5e-15 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 6e-15 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-15 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 6e-15 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-14 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-14 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 7e-14 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 2e-13 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 4e-13 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 5e-13 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 7e-13 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 8e-13 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 2e-12 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 2e-12 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-12 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 4e-12 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 7e-12 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 7e-12 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 8e-12 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 1e-11 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-11 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 8e-11 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 8e-11 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-11 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 9e-11 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 2e-10 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-10 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 4e-10 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-10 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-09 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 1e-09 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-09 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-09 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 5e-09 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 6e-09 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 9e-09 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-08 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-08 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 7e-08 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 7e-08 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 8e-08 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 1e-07 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-07 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-07 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-07 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 3e-07 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 4e-07 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 4e-07 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 5e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-07 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-07 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 6e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 6e-07 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 7e-07 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-07 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 9e-07 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 1e-06 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-06 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 2e-06 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 2e-06 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 2e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-06 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 5e-06 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 5e-06 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 6e-06 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 7e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 1e-05 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 2e-05 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 3e-05 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 4e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-05 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-05 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 8e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 1e-04 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-04 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-04 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 2e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 3e-04 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 9e-04 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.001 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.001 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 0.002 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 0.002 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 0.002 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 0.002 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.002 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 0.003 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.003 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 0.003 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.004 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.004 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 397 bits (1021), Expect = e-133
Identities = 166/337 (49%), Positives = 204/337 (60%), Gaps = 45/337 (13%)
Query: 231 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 290
+ WT +++ YSN+VANFF AQG + GD VAL +ENR EFV LWLGL+K+GV TALIN
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
NLR SLLHCI ++ A I+
Sbjct: 61 NLRLESLLHCITVSKAKALIF--------------------------------------N 82
Query: 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG 410
L PLL++ T PPS V +DKL YIYTSGTTGLPKAAVI + RYY + Y G
Sbjct: 83 LLDPLLTQSSTEPPSQD-DVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFG 141
Query: 411 FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIG 470
R +D Y LPLYH+AGG M +GQAL+ G VVIRKKFSASN++ D KY CT+ QYIG
Sbjct: 142 MRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIG 201
Query: 471 EMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD 530
E+CRYLL+ P E++ HNVRL GNGLRPQIW +FV RF I QIGEFYGATEG +++++
Sbjct: 202 EICRYLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVN 261
Query: 531 INKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567
I+ V A G + P IR ++ E TG
Sbjct: 262 IDNH--VGAC--GFNSRILPSVYP--IRLIKVDEDTG 292
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 395 bits (1016), Expect = e-130
Identities = 137/338 (40%), Positives = 188/338 (55%), Gaps = 4/338 (1%)
Query: 188 RALQRYLRFL-WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRV 246
L LR L A ++ D+F E A R P++ +FE+ + ++ A +NR
Sbjct: 16 PDLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRY 75
Query: 247 ANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGV 306
A++ A+G+ KGD VAL++ENRPE++ WLGL+KLG + AL+N R L H +N+
Sbjct: 76 AHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDA 135
Query: 307 SAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
I G EL +A +E L W D+ P + L+ + PT+ P+
Sbjct: 136 KHLIVGEELVEAFEEARADL--ARPPRLWVAGGDTLDDP-EGYEDLAAAAAGAPTTNPAS 192
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
V +D YIYTSGTTGLPKAAV+S+ R+ G + D Y LPLYH
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHN 252
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
GG + L G + +R+KFSAS ++ DV +Y+ T QYIGE+CRYLL+ P KP D+
Sbjct: 253 TGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDR 312
Query: 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
H +RLM GNGLRP IW EF RF I +I EFY A+EG
Sbjct: 313 DHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEG 350
|
Length = 600 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 293 bits (753), Expect = 4e-92
Identities = 127/295 (43%), Positives = 168/295 (56%), Gaps = 12/295 (4%)
Query: 235 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +V+ SN+VA LA GLK GD+VAL+L N P F+ +WLGL+KLG TA +N N+R
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIR 64
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVPRSQAL 352
SLLHC G + EL +AV+EI +L + V++F S SP +L
Sbjct: 65 SGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHT-----SPPEGVISL 119
Query: 353 SPLLSEVPTSPPSLSYRVGV--QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI- 409
+ P S R GV + +YIYTSGTTGLPKAA IS+ R L + +
Sbjct: 120 LAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLR--VLQCSGMLSLC 177
Query: 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYI 469
G D YT LPLYH++G + I + G +V++ KFSAS ++ D KY TV QYI
Sbjct: 178 GVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYI 237
Query: 470 GEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
GE+ RYL + P+ D+ H VRL GNGLRP +W EF+ RF + E Y +TEG
Sbjct: 238 GELLRYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEG 292
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 2e-89
Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 62/296 (20%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+ + A++NR A+ A G+KKGD VAL++ENRPE++ WL L+KLG + A
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAA------ 56
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
IN G L + +S +
Sbjct: 57 -------LINTT-----QRGEVLAHCIN-VSDA--------------------------- 76
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 412
R + D YIYTSGTTGLPKAA++S+ R+ G +
Sbjct: 77 ----------------RAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLK 120
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEM 472
D Y LPLYH+ + AL G + +R+KFSAS ++ DV +Y T QY+GE+
Sbjct: 121 PDDVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL 180
Query: 473 CRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
CRYLL+ PEKP+D+ H +R + GNGLRP IW EF +RF + +I EFYG+TEG
Sbjct: 181 CRYLLNQPEKPDDRDHPLRKIIGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGF 236
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 2e-72
Identities = 103/306 (33%), Positives = 142/306 (46%), Gaps = 60/306 (19%)
Query: 229 FENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287
FE WT + R A++ + ++ GD VA+ N EFV LWL L +G + A
Sbjct: 1 FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60
Query: 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
IN+NL + L+HC+ I S K PD
Sbjct: 61 INYNLSGDPLIHCLKI------------------------SGAKFVIVDPD--------- 87
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
D IYTSGTTGLPK IS R +++
Sbjct: 88 --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121
Query: 408 QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQ 467
+ + DR YT +PLYH + + L G + + +KFSAS ++ DV + T+ Q
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQ 181
Query: 468 YIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527
Y+GE+CRYLL+TP P D+ H VR+ +GNGLRP IW F +RF + +IGEFY ATEG+ A
Sbjct: 182 YVGELCRYLLATPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFA 241
Query: 528 ILDINK 533
+ N
Sbjct: 242 FTNHNV 247
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 4e-59
Identities = 84/297 (28%), Positives = 126/297 (42%), Gaps = 63/297 (21%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+T ++ NR+A LA G++ GD VALML+N PEF+ W L+KLG + IN L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
R L H ++ +G + D + TS G+
Sbjct: 63 RGEELAHILDHSGARLIV-----VDTAAILYTS-GT------------------------ 92
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 412
T PP K ++++ + F A +G R
Sbjct: 93 --------TGPP------------------------KGVLLTHAQLLFAARLAARLLGLR 120
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEM 472
D TPLPL+H A + AL+ G +V+ +FSAS ++ V K+ TV +G M
Sbjct: 121 PDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAM 180
Query: 473 CRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
L+ P P+D+ H +R +FG L IW F +RF + ++ E YG TE I+
Sbjct: 181 AAILMKQPPSPDDRDHPLRFVFGAPLPAAIWPAFEERFGV-KLVEGYGMTETGVPII 236
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 3e-58
Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 16/327 (4%)
Query: 207 DLTIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
+LT+A + A R+P++ +F T ++++ +NR+A A G+K GD VA++
Sbjct: 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
L N PEF+ +L + G + +N L L + +N AG I AE ++ ++
Sbjct: 70 LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE 129
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
+L + + + L L +E P V D +YTSGT
Sbjct: 130 ALPVVLVV------LLVGDADDRLPITLEALAAEGPGPDADAR-PVDPDDLAFLLYTSGT 182
Query: 385 TGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
TGLPK V++ N G A A G D + LPL+H G + + L+ G
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242
Query: 443 VVI--RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH-NVRLMFGNG-- 497
+V+ + F + KYK TV + R LL PEK +D ++RL+ G
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302
Query: 498 LRPQIWSEFVDRFRIAQIGEFYGATEG 524
L P++ F +RF I E YG TE
Sbjct: 303 LPPELLERFEERFGPIAILEGYGLTET 329
|
Length = 534 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 5e-57
Identities = 102/330 (30%), Positives = 156/330 (47%), Gaps = 8/330 (2%)
Query: 199 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 258
A + + T+ + A R P++ + +F T WT + + A+ A G+K+G
Sbjct: 12 AVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRG 71
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VALM NR EF+ ++LG + LG I IN LR L H + +G + A L A
Sbjct: 72 DRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAA 131
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
++ + W D +S S VP + +PL P P+ + V D
Sbjct: 132 LEAADPGDLPLPAV--WLLDAPASVS-VPAGWSTAPL---PPLDAPAPAAAVQPGDTAAI 185
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+YTSGTTG K + ++Y+ G A + D YT LPL+HT QAL+
Sbjct: 186 LYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF-QALL 244
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G V+ +FSAS ++ V ++ TV +G M LLS P + D+AH VR+ G G+
Sbjct: 245 AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGV 304
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ + F +RF + + + YG+TE I
Sbjct: 305 PAALHAAFRERFGVDLL-DGYGSTETNFVI 333
|
Length = 542 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 7e-57
Identities = 78/298 (26%), Positives = 123/298 (41%), Gaps = 13/298 (4%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++++ +NR+A A G+ GD VA++L N PE+V L + K G ++ +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
L + + + I EL + E+ L + L
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLAL------IIVGDDGEGLDLLDDE 114
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414
LL+ PP+ V D IYTSGTTG PK ++++ L +A + G
Sbjct: 115 LLAGASAEPPAPP--VDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPG 172
Query: 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS--ASNYFSDVCKYKCTVGQYIGEM 472
DR LP H G I L+ G +V+ KF+ + + KYK TV + +
Sbjct: 173 DRVLLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231
Query: 473 CRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
R LL PE+ + ++RL+ G L P++ +RF + YG TE
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVA 289
|
Length = 412 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 4e-40
Identities = 54/98 (55%), Positives = 73/98 (74%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N+++ NIDN GA GF SR++P++YPI +I+VD T E IR+ GLC C+PGEPG+ +G
Sbjct: 256 NSSLVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPGEPGLLVG 315
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLS 98
KI+ ++P R + GYVNE + KKI DVF+ GDSAFLS
Sbjct: 316 KIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLS 353
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 1e-35
Identities = 111/407 (27%), Positives = 173/407 (42%), Gaps = 57/407 (14%)
Query: 209 TIADIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
+ ++ + A +K +FE+ ++ ++ NR AN F + G++KGD VAL
Sbjct: 8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL 67
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE---LTDAV- 319
L+N PEF+ W GL+K+G I IN L + + + S + A+ + +
Sbjct: 68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQ 127
Query: 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRV--GVQDKLI 377
QE +T L P D SS + L ++ P +L Y D
Sbjct: 128 QEDATPLRHICLTRVALPADDGVSS-------FTQLKAQ---QPATLCYAPPLSTDDTAE 177
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH-----TAGGAMC 432
++TSGTT PK VI+++ F G A+Q R D + T +P +H TA AM
Sbjct: 178 ILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA--AM- 234
Query: 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR- 491
A G V+ +K+SA ++ VCKY+ T+ + I M R L+ P D+ H +R
Sbjct: 235 --AAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLRE 292
Query: 492 LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
+MF L Q F +RF + ++ YG TE + I+ G K+ PS
Sbjct: 293 VMFYLNLSDQEKDAFEERFGV-RLLTSYGMTETIVGII---------GDRPGDKRRWPSI 342
Query: 552 ARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGV 598
RP F Y+ + D I + + KGV
Sbjct: 343 GRPGF-----------CYEAEIRDDHNRPLPAGEIGE----ICIKGV 374
|
Length = 517 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 7e-35
Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 10/319 (3%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
LTI I R A + P+K F+ T +++ NR+AN A G+KKGD VA+ N
Sbjct: 6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWN 65
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
E++ + + K+G + IN L+ + + +N A + +E + I L
Sbjct: 66 SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP 125
Query: 328 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ V+ D ++ P LL+ + + D +YTSGTTG
Sbjct: 126 T-VRTVIVEGDGPAAPLA-PEVGEYEELLAAASDTFDFP--DIDENDAAAMLYTSGTTGH 181
Query: 388 PKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
PK V+S HR FL A+ + D + +P++H + AL+ G VI
Sbjct: 182 PKGVVLS-HRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY-LALMAGAKQVIP 239
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWS 504
++F N + + T + + + LL P ++RL+ G L P +
Sbjct: 240 RRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLR 299
Query: 505 EFVDRFRIAQIGEFYGATE 523
EF ++F I + + YG TE
Sbjct: 300 EFKEKFGI-DLVQGYGMTE 317
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-31
Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 52/322 (16%)
Query: 210 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 269
+AD+ A R P++ F + T +++ S+R A + G+KKGD VALML N P
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP 60
Query: 270 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
+F + G+ K G + +N L H +N +G I DA+
Sbjct: 61 QFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASG------- 113
Query: 330 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 389
+PL V SP D + YT GTTG+PK
Sbjct: 114 -----------------------APLPLPVELSP---------DDLAVLQYTGGTTGVPK 141
Query: 390 AAVISNHRYYFLGGAIAYQI-----GFRT-KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443
A+++ HR A QI R +DRF T LPL+H G + + L G
Sbjct: 142 GAMLT-HRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATN 197
Query: 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQ 501
V+ F N ++ +Y+ T+ + + LL+ PE + ++RL G L +
Sbjct: 198 VLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE 257
Query: 502 IWSEFVDRFRIAQIGEFYGATE 523
+ F ++ A + E YG TE
Sbjct: 258 VAERFEEKTG-APLVEGYGLTE 278
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 93/328 (28%), Positives = 147/328 (44%), Gaps = 35/328 (10%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS---VALML 265
TIA + R+ A + + + + WT ++V A + A L D V ++L
Sbjct: 4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAA--ALIALADPDRPLHVGVLL 59
Query: 266 ENRPEFVCLWLGLSKLGVITAL-INHNLRQNSLLHCINIAGVSAFIYGAE---LTDAVQE 321
N PE + WL + LG + +N R +L I A + AE L D +
Sbjct: 60 GNTPEML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDL 118
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPR-SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 380
V++ D D+ P ++ ++ + P V D + I+
Sbjct: 119 ------PGVRVL----DVDT-----PAYAELVAAAGALTPHRE------VDAMDPFMLIF 157
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSGTTG PKA S+ R F G A+ + G D Y +PL+H+ A+ G
Sbjct: 158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASG 217
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP 500
V + KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+ FGN P
Sbjct: 218 AAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASP 277
Query: 501 QIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ +EF RF Q+ + YG++EG +
Sbjct: 278 RDIAEFSRRFG-CQVEDGYGSSEGAVIV 304
|
Length = 540 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 49/78 (62%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Query: 108 KKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLL 164
GLC C EPG+ +GKI+ ++P R + GYVNE + KKI DVF+ GDSAFLSGD+L
Sbjct: 298 SDGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLSGDVL 357
Query: 165 VMDKWGYLYFKDRTGDTF 182
VMD+ GYLYFKDRTGDTF
Sbjct: 358 VMDELGYLYFKDRTGDTF 375
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 5e-30
Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 261 VALMLENRPEFVCLWLGLSKL-GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAV 319
V ++L+N PEF L LG + L G++ +N R +L I A + + + +
Sbjct: 57 VGVLLDNTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115
Query: 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI 379
L V++ + DS A + L+ + P D + I
Sbjct: 116 D----GLDPGVRVI----NVDS--------PAWADELAAHRDAEPPFR-VADPDDLFMLI 158
Query: 380 YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 439
+TSGT+G PKA ++ + G +A + G D Y +PL+H+ AL
Sbjct: 159 FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAA 218
Query: 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR 499
G + +R+KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+++GN
Sbjct: 219 GASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGA 278
Query: 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
P + F RF + + +G+TEG AI
Sbjct: 279 PGDIARFARRFGCVVV-DGFGSTEGGVAI 306
|
Length = 529 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-29
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Query: 199 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 258
ARR TI DI R A R P+K +F + WT +++A NRVA L GLKKG
Sbjct: 7 RARRQ-----TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKG 61
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VA + N + LWL ++ G + +N L L + ++ +G AF+ L
Sbjct: 62 DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPT 121
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ L V S +P + + P + D L
Sbjct: 122 AEAALALLP--VDTLILSLVLGGREAP-GGWLDFADWAEAGSVAEPDVELA---DDDLAQ 175
Query: 379 I-YTSGTTGLPKAAVISN----HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 428
I YTSGT LPK A++++ Y + +A D LPLYH A
Sbjct: 176 ILYTSGTESLPKGAMLTHRALIAEY--VSCIVA--GDMSADDIPLHALPLYHCAQ 226
|
Length = 523 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 5e-29
Identities = 86/342 (25%), Positives = 140/342 (40%), Gaps = 25/342 (7%)
Query: 190 LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 249
LR RR A + A R+P++ + E T +++ SN +A
Sbjct: 35 PDNGLRLAADIRRYG----PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARG 90
Query: 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAF 309
LA G++ GD VA++ N FV K+G L+N L GV A
Sbjct: 91 LLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL 150
Query: 310 IYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 369
+Y E TD + + LG +L +W + D + L L++ T+P +
Sbjct: 151 VYDDEFTDLLSALPPDLG---RLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPK 207
Query: 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429
G I I TSGTTG PK A + ++ FR + P P++H G
Sbjct: 208 PGG----IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGW 263
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK--A 487
A + A+ G VV+R++F D+ K+K T + M +L + K
Sbjct: 264 A-HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDT 322
Query: 488 HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE----FYGATE 523
+++++F G+ L P++ + ++ F G YG+TE
Sbjct: 323 SSLKIIFVSGSALSPELATRALEAF-----GPVLYNLYGSTE 359
|
Length = 549 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-28
Identities = 76/334 (22%), Positives = 119/334 (35%), Gaps = 42/334 (12%)
Query: 220 RSPNKVIFMFENTE-----WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
P+ +F+ + T + R+AN G KGD VA+ + N PE V
Sbjct: 22 DRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIA 81
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334
L +++G I A+++ L ++ I G I +EI +
Sbjct: 82 LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEI------ALL--- 132
Query: 335 WSPDTDSSSSPVPRSQ-ALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAV 392
D D+ S V V + + + D L +YTSGTTG PK V
Sbjct: 133 --EDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIV 190
Query: 393 ISNHRYYFLGGAIAYQIGFRTK--DRFYTPLPLYHTAGGAMCIGQALIFGCCVVI---RK 447
S H Y + + + DRF+ G + L G V+ R
Sbjct: 191 HS-HGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRP 249
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPE-KPEDKAHNVRLMFGNG--L 498
+S + + KYK T+ R L+ +P D + +R++ G L
Sbjct: 250 FYSPERLWEALEKYKVTI------FGTSPTFLRRLMKLGLGEPYDLSS-LRVLGSAGEPL 302
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATE-GMAAILDI 531
P+ + F + I + YG TE GM I
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGR 335
|
Length = 528 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 15/307 (4%)
Query: 231 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 290
TE T + + R+A GLK+GD VAL+ N EF ++LG G I + N
Sbjct: 8 GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67
Query: 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
+ + L H + I+ + D V+E + LG V++ DS+ V R +
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIV----LDSAPDGVLRIE 123
Query: 351 AL--SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAI 405
L L +E P L G D +Y+SGTTGLPK ++S+
Sbjct: 124 DLLEPRLGAEDEFRPTPL--IDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDT 181
Query: 406 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ D T LP YH G + L G V+I KF + + + KYK T
Sbjct: 182 LKGNPDSSNDVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ + L +P + ++R++F L ++ E RF I + YG TE
Sbjct: 241 LFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTE 300
Query: 524 -GMAAIL 529
G A L
Sbjct: 301 TGPATTL 307
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 7e-27
Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 524 GMAAI-LDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAAI L D++A++ + + LP+YA PLF+R + E+E TGT+K +K+DL+KEGFD
Sbjct: 505 GMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFD 564
Query: 583 PNVIQDRLYYLSSK-GVYEELTPEVYKDLVQGNIRL 617
P+ + D LY L G Y LT E+Y ++ G RL
Sbjct: 565 PSKVDDPLYVLDPGSGGYVPLTAELYAEIAAGKFRL 600
|
Length = 600 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 71/326 (21%), Positives = 118/326 (36%), Gaps = 51/326 (15%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
D T+ D+ +A R P++ + T ++++A +R+A LA G+ GD V + L
Sbjct: 13 GDQTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQL 72
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N EFV L+ L KLG I L R + + H + A+I
Sbjct: 73 PNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYI--------------- 117
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
D S ++ LL E+P D ++ + GTT
Sbjct: 118 ----------IADRFSGFDYAALAR---ELLEELP-------------DVALFQLSGGTT 151
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA----GGAMCIGQALIFGC 441
GLPK +++ Y + A A G + LP H G + AL+ G
Sbjct: 152 GLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLG---ALLAGG 208
Query: 442 CVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ 501
VV+ S F + + K T + + L E + ++R++ G
Sbjct: 209 TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLS 268
Query: 502 IWS--EFVDRFRIAQIGEFYGATEGM 525
+R + + +G EG+
Sbjct: 269 PELARRVEERLGC-PLQQVFGMAEGL 293
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 6e-25
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
D +YTSGTTG PK V+S+ A+A IG D + LPL+H GG +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 434 GQALIFGCCVVIRKKFS-ASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAH 488
AL+ G VV+ + F ++ + +Y+ T V L E
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY----DALAKAAEDRGYDLS 116
Query: 489 NVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
++RL+ G L P++ F +R I E YG TE
Sbjct: 117 SLRLLISGGEPLSPELLERFEERPGA-PILEGYGLTETSVVTS 158
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 40/275 (14%)
Query: 225 VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
VI T ++EA SNR+A+ A GL++GD VA++LEN PEF ++ + G+
Sbjct: 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62
Query: 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 344
IN +L + + ++ +G I A L D E++ L + V L +
Sbjct: 63 YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLL------VVAG 116
Query: 345 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK--------------- 389
PVP ++ L+ P +P + +Y+SGTTG PK
Sbjct: 117 PVPGFRSYEEALAAQPDTPIADETAGAD-----MLYSSGTTGRPKGIKRPLPGLDPDEAP 171
Query: 390 --AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
+ Y ++ +P PLYHTA AL G VV+ +
Sbjct: 172 GMMLALLGFGMYGGPDSVY-----------LSPAPLYHTAPLRFG-MSALALGGTVVVME 219
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK 482
KF A + + +Y+ T Q + M +L PE+
Sbjct: 220 KFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEE 254
|
Length = 502 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-22
Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 30/300 (10%)
Query: 207 DLTIADIFREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
IAD+F E + P++V + + T ++E +NR+A++ +AQGL GD V +
Sbjct: 2 AWNIADLF-EAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYA 60
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
NR E+V LG K + +N+ ++ L + ++ + A +Y E V E+
Sbjct: 61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
L ++ D S + +P + L+ R D L +YT GTT
Sbjct: 121 L-PKLRTLVVVED-GSGNDLLPGAVDYEDALAAGSPERDFGE-RSP--DDLYLLYTGGTT 175
Query: 386 GLPKAAVISNHRYYF-LGGAIA----------YQIGFRTKDRFYTPL----PLYHTAG-- 428
G+PK + + L G ++ R PL H AG
Sbjct: 176 GMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW 235
Query: 429 GAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGE-MCRYLLSTPEKPED 485
A AL G VV+ +F A + + + K V +G+ M R LL E
Sbjct: 236 AAF---AALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGP 292
|
Length = 533 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 6e-22
Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 32/309 (10%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSK 280
P+++ + E E T +Q+ Y ++VA + + + +KKG+ +A++ +N E++ L ++K
Sbjct: 16 PDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75
Query: 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 340
+ I +N L +N L+ + +G + + +
Sbjct: 76 VECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--------------- 120
Query: 341 SSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
S V +L + + + S I YTSGTTG PK AV++
Sbjct: 121 SYVQRVISITSLKEIEDRKIDNFVEKNES------ASFIICYTSGTTGKPKGAVLTQENM 174
Query: 399 YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDV 458
++ + I DR LPL+H G + L G +++ +KF + S +
Sbjct: 175 FWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234
Query: 459 CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDR-FRIAQ 514
K+K TV + + + L++ + +VR F NG P ++ EF+DR F
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVR-WFYNGGAPCPEELMREFIDRGFL--- 290
Query: 515 IGEFYGATE 523
G+ +G TE
Sbjct: 291 FGQGFGMTE 299
|
Length = 496 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 1e-21
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N N+ N G +G V + P +I++ D T EP+R+ G C + +PGE G+ IG
Sbjct: 351 NVGFINVFNFDGTVGRVPLWLAH--PYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIG 408
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 96
+I P + GY + + S KKI+ DVF+ GD+ F
Sbjct: 409 RITDRGP---FDGYTDPEASEKKILRDVFKKGDAWF 441
|
Length = 600 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 221 SPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280
+P++ FE + T ++ VA A G+KKGD VAL+++N E + + L +
Sbjct: 15 TPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQ 74
Query: 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 340
LG + L+N L + LL ++ A V I + + + ++
Sbjct: 75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK--------FAE--- 123
Query: 341 SSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI---SNHR 397
L P + + + +YTSGTTG PK VI NH
Sbjct: 124 ---------------LMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPK-GVIQTYGNHW 167
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452
+ +G A+ +G D + +P++H +G ++ + +++I+G VV+ +KF A
Sbjct: 168 WSAVGSAL--NLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAE 219
|
Length = 483 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-20
Identities = 65/320 (20%), Positives = 117/320 (36%), Gaps = 10/320 (3%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+T+ ++ A R +K ++F + T ++ A R A A G+ KGD VA+ N
Sbjct: 5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPN 64
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
P +V LG K G + +N + + + A +T L
Sbjct: 65 SPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP 124
Query: 328 S--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ +V + D + + L+ P + V D ++TSGTT
Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDFLAA------GDPAERAPEVDPDDVADILFTSGTT 178
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK A++++ + A +G DR+ P +H G + L+ G ++
Sbjct: 179 GRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 503
F F + + TV M LL P++ + ++RL + +
Sbjct: 239 LPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALL 298
Query: 504 SEFVDRFRIAQIGEFYGATE 523
F + + YG +E
Sbjct: 299 ERFESELGVDIVLTGYGLSE 318
|
Length = 513 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 1e-19
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N N+ N+PGA+G + I++++ D T EPIR+ G C + PGE G+ +G
Sbjct: 233 NVGFINLFNKPGAVGRLPP-----AAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLG 287
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLS 98
+I + GY +++ + KKI+ DVF+ GD+ F +
Sbjct: 288 EI---TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNT 322
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-19
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 26/348 (7%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
I E A +P +F+ T + V N V +A G+++GD V +++E RP +
Sbjct: 452 IIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSAL 511
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLH-CINIAGVSAFIYGAELTDAVQEISTSLGSNVK 331
LS+LG + L + ++ L + + GV+ I +A ++ L V
Sbjct: 512 VAIAALSRLGAVAVL----MPPDTDLAAAVRLGGVTEIITDPTNLEAARQ----LPGRVL 563
Query: 332 LFSWSPDTD---SSSSPVPRSQALSPLLSEVPTSPPSLSYR--VGVQDKLIYIYTSGTTG 386
+ D + V + + P E+P YR G+ L +I S G
Sbjct: 564 VLGGGESRDLDLPDDADVIDMEKIDPDAVELPGW-----YRPNPGLARDLAFIAFSTAGG 618
Query: 387 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
A I+N+R+ A +D Y PL+H +G + +G A++ G + +
Sbjct: 619 ELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS 678
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEF 506
+ + +V +Y TV Y M R ++ P H VRL G+G+ +W
Sbjct: 679 RGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERV 738
Query: 507 VDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIK-KALPSYAR 553
V+ F A + EF+ T+G A + +VS G K + LP R
Sbjct: 739 VEAFAPAHVVEFFATTDGQAVL------ANVSGAKIGSKGRPLPGAGR 780
|
Length = 994 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 79/344 (22%), Positives = 135/344 (39%), Gaps = 26/344 (7%)
Query: 192 RYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFL 251
RYLR + A RR + F A R P++ + E T ++++ S+ +A
Sbjct: 30 RYLRIVAAMRRE---GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQ 86
Query: 252 AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY 311
A + + V +M N FV L +++G L+N + +L + GV IY
Sbjct: 87 ALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIY 146
Query: 312 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYR 369
E + V ++ +W D D +L P
Sbjct: 147 DEEFSATVDRALADCPQATRIVAW-TDEDH--------DLTVEVLIAAHAGQRPE----P 193
Query: 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429
G + ++I + TSGTTG PK A S AI + +R ++ P++H G
Sbjct: 194 TGRKGRVI-LLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF 252
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN 489
+ + A C +V R++F + +++ T + M ++ P + ++
Sbjct: 253 SQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSG 311
Query: 490 VRLMF----GNGLRPQIWSEFVDRFRIAQIGEFYGATE-GMAAI 528
L F G+ +RP + F+D+F I Y ATE GM A
Sbjct: 312 RSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGMIAT 354
|
Length = 537 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 70/271 (25%), Positives = 106/271 (39%), Gaps = 31/271 (11%)
Query: 212 DIFREHAVRSPNKV--IFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
D+ +A P+K+ I+ ++ E +T ++ YSN+ ANFF A G+ KGD+V L L+
Sbjct: 21 DVVDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLK 80
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEIST 324
R EF L L K+G I H L +++ I AG+ + E + + + E +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAP 140
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTS 382
GS L + P+ + D L+ +TS
Sbjct: 141 ECGSPTLLVLVGDP------VPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTS 194
Query: 383 GTTGLPKAAVISNHRYYFLGGAIA--YQIGFRTKDRFYTPLPLYHTAGGAMCI-----GQ 435
GTTG+PK V +H Y LG + Y + T G + GQ
Sbjct: 195 GTTGMPK-MVEHDHTYP-LGHIVTAKYWQNVKEGGLHLT----VADTGWGKAVWGKLYGQ 248
Query: 436 ALIFGCCVVI--RKKFSASNYFSDVCKYKCT 464
I G V + KF N + KY T
Sbjct: 249 -WIAGAAVFVYDYDKFDPKNLLEKIEKYGVT 278
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 106 YNKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGD 162
+ G C + E G+ +G+I + GY +++ + KKI DVF+ GD+ F +GD
Sbjct: 268 RDANGFCIKVPPGEVGLLLGEI---TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
L+ D +GY YF DR GDTF
Sbjct: 325 LVRRDGFGYFYFVDRLGDTF 344
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 21/339 (6%)
Query: 206 KDLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
TI D F R P++ ++ + +T +Q+ +R+A LA G++ GD V +
Sbjct: 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGI 75
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDA 318
N E++ +++G I IN R + L + + +GV I ++
Sbjct: 76 WAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAM 135
Query: 319 VQEISTSLGSNVKLFSWSPDTDS-------SSSPVPRSQALSPLLSEVPT-SPPSLSYRV 370
+QE+ L + +P P A L + T S +L+ R
Sbjct: 136 LQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQ 195
Query: 371 GVQDKLIYI---YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA 427
D+ I YTSGTTG PK A +S+H G +A +G DR P+PLYH
Sbjct: 196 ASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255
Query: 428 GGAMCIGQALIFGCCVVI-RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
G + + G C+V + F V + +CT + M L P++
Sbjct: 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD 315
Query: 487 AHNVR--LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
++R +M G ++ +D +A++ YG TE
Sbjct: 316 LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354
|
Length = 558 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-18
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 524 GMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 583
GMAAI+D + +D+ S + K+LP YARP FIR L EV+ TGT+KL+K DLQKEG+DP
Sbjct: 415 GMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKTDLQKEGYDP 474
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 5e-18
Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 217 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
HA +P+K VI T ++++ SNR+A+ F + GLK+GD VA+ +EN ++ +
Sbjct: 6 HAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEV 65
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL-GSNVKLF 333
+ G+ +N +L + ++ +G A I A D + + G +L
Sbjct: 66 CWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLV 125
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 392
+ + ++ +P +P + +G D L Y+SGTTG PK
Sbjct: 126 LDGDGE------LEGFVGYAEAVAGLPATPIA-DESLG-TDML---YSSGTTGRPKGIKR 174
Query: 393 ------ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
+ GFR+ + +P PLYH+A + G V++
Sbjct: 175 PLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYHSAPQRAV-MLVIRLGGTVIVM 231
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR------- 499
+ F A Y + + +Y T Q + M +L PE+ DK +++ + L
Sbjct: 232 EHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK-YDL-----SSLEVAIHAAA 285
Query: 500 ---PQIWSEFVDRFRIAQIGEFYGATEGMAA 527
PQ+ + +D + I E+Y ATEG+
Sbjct: 286 PCPPQVKEQMIDWWG-PIIHEYYAATEGLGF 315
|
Length = 511 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-17
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 107 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDL 163
+ G C + E G+ IG+I P + GY + + S KKI DVF+ GD+ F +GDL
Sbjct: 390 DADGRCIKVKPGEVGLLIGRITDRGP---FDGYTDPEASEKKILRDVFKKGDAWFNTGDL 446
Query: 164 LVMDKWGYLYFKDRTGDTF 182
+ D +G+ F DR GDTF
Sbjct: 447 MRDDGFGHAQFVDRLGDTF 465
|
Length = 600 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 8e-17
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAGG 429
D + ++TSGTTG PK + H+ A ++++ DR +PL+H G
Sbjct: 2 DDPALILHTSGTTGRPKGVPL-THKNLLASARNIAKSHKLTPS--DRCLNVMPLFHIHGL 58
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE-KPEDKAH 488
+ + L+ G VV KFSAS ++ D+ KY+ T + + + LL T + P
Sbjct: 59 IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP 118
Query: 489 NVRLM--FGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+R + L P + RF + E YG TE I
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFG-VPVLEAYGMTEAAHQI 159
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 9e-17
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 23/299 (7%)
Query: 189 ALQRYLRFLWAAR------RVAQ---KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 239
A LR L A R + + + + R A P + +F T ++
Sbjct: 5 AYLAELRALQQAAWPAGIPREPEYPHGERPLTEYLRAWARERPQRPAIIFYGHVITYAEL 64
Query: 240 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
+ S+R A +G+ GD VA+ L N P+F ++ G+ KLG + ++ R++ L +
Sbjct: 65 DELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSY 124
Query: 300 CINIAGVSAFIYGAELTDAVQE----------ISTSLGSNVKLFSWSPDTDSSSSPVPRS 349
+N AG + +L V++ I TSL + P DS +P +
Sbjct: 125 ELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAA 184
Query: 350 QALSPLLSEVPTSP-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ 408
LL + P + YT GTTG+PK R A AY
Sbjct: 185 AGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPK-GCEHTQRDMVYTAAAAYA 243
Query: 409 IGF--RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ F + LP + AG + L G +V+ ++ A + + V +Y+ T
Sbjct: 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 1e-16
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+YTSGTTG PK ++++ + D + PLYH AGG + AL
Sbjct: 7 LYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL-PALA 65
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G VV+ KF + +++ T + M + LL P+ ++RL+
Sbjct: 66 AGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAA 125
Query: 498 -LRPQIWSEFVDRFRIAQIGEFYGATE--GMAAILD 530
+ ++ + + + YG TE +L
Sbjct: 126 PMPAEL-KRAMIEWFGPVFVQGYGMTETGPTTTLLS 160
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 107 NKKGLC---SRCEPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIFTDVFEIGDSAFLSGD 162
+ +G C + EPG+ I KI +P +LGY + + KK+ DVF+ GD F +GD
Sbjct: 334 DAQGFCIPVGKGEPGLLISKITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYFNTGD 390
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
LLV D+ +LYF DRTGDTF
Sbjct: 391 LLVQDRQNFLYFHDRTGDTF 410
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 NIA--NIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
NI N + GA+G S L + P +I+ D EP+R+ +G C GEPG+ I
Sbjct: 293 NIGFINYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLIS 352
Query: 61 KIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAF 96
KI +P +LGY + + KK++ DVF+ GD F
Sbjct: 353 KITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYF 386
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 4e-16
Identities = 77/346 (22%), Positives = 125/346 (36%), Gaps = 42/346 (12%)
Query: 195 RFLWAARRVA-QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ 253
R +W A LTI +F E A +P+ V + + T +++A +NR+A ++
Sbjct: 213 REVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL 272
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313
G+ G++VA++ + E V L + K G ++ L A+I
Sbjct: 273 GVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERL----------AYILED 322
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
+ + +V L + D LSE+P + P + +
Sbjct: 323 SRPTLLLTQAHLRVDDVGLPGLALDDA---------------LSEIPDTDP--IPQALLG 365
Query: 374 DKLIY-IYTSGTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430
D L Y IYTSG+TG PK I HR L A A G DR L
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIE-HRALANLLNDAGAR-FGLDADDRV-LALASLSFDASV 422
Query: 431 MCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 487
I AL+ G +V+ + + TV + + R LL P+ +
Sbjct: 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS 482
Query: 488 H--NVRLMF--GNGLRPQIWSEFVDRFRIAQ-IGEFYGATEGMAAI 528
+R + G L + + +A+ + YG TE
Sbjct: 483 PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDA 528
|
Length = 642 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 6e-16
Identities = 53/216 (24%), Positives = 72/216 (33%), Gaps = 61/216 (28%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
T ++ R+A +A G+K GD VA++ ENRPE+V ++ L ++ A
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWV-----IADLAILAA----- 53
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
V IY + V I G+ V PD
Sbjct: 54 ------------GAVPVPIYPTSSPEEVAYILNDSGARVVFVEDKPD------------- 88
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--I 409
D IYTSGTTG PK +++ HR L A A I
Sbjct: 89 ----------------------DLATLIYTSGTTGNPKGVMLT-HR-NLLAQAAALLEVI 124
Query: 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
DR + LPL H + L G V
Sbjct: 125 PLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF 160
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 76/349 (21%), Positives = 141/349 (40%), Gaps = 29/349 (8%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ R +K+ +++ T +++ NR N G+++ + V L+L + PEF
Sbjct: 10 LDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFP 69
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
+ G K+G + IN L + + +N + + EL + ++ +
Sbjct: 70 TAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHV 129
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
+ S + L TS +++ ++Y+SG+TG PK V
Sbjct: 130 IVVGGAGPGALSYAQLIATAAEELEAAATSADDMAF---------WLYSSGSTGRPKGVV 180
Query: 393 ISNHRYYFLGGAIAYQI-GFRTKDRFYTPLPLYHTAGGAMCIGQALIF-----GCCVVIR 446
+H A A + G D ++ L+ G +G L F V++
Sbjct: 181 HLHHDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYG----LGNGLYFPLSVGATTVLMP 236
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRY--LLSTPEKPEDKAHNVRLMF--GNGLRPQI 502
++ + F+ + +YK TV + G Y +L+ PEKPE ++RL G L +I
Sbjct: 237 ERPTPDAVFATIERYKPTV--FFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEI 294
Query: 503 WSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
+ + F + +I + G+TE M I N+ V + G K +P Y
Sbjct: 295 GYRWKELFGL-EILDGIGSTE-MLHIFLSNRPGAVKYGTSG--KPVPGY 339
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 8e-16
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 380 YTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
YTSGTTG PK A+++ HR G +IA ++G DR P+PL+H G + + +L
Sbjct: 9 YTSGTTGRPKGAMLT-HRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLT 67
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G +V+ +KF + + + T + M LL P+ + ++R G
Sbjct: 68 AGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTGISGGA 127
Query: 498 LRPQIWSEFVDR----FRIAQIGEFYGATE--GMAAILDINKSLDVSAVSEGIKKALP 549
P E V R F +A+I YG TE G+ + + + G + LP
Sbjct: 128 PVP---PELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG--RPLP 180
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 9/209 (4%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E+T QV + R+A + GL+ GD +A++ +N E++ L + G ++ +
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
L ++ + + + A G D + + + P S +
Sbjct: 65 LTAETIRYVLEHSDAKALFVGK--LDDWDAMKAGVPEGLPTIILFP-----YSTLKDHYK 117
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 411
LL+ T P +D +YTSGTTG PK ++S + F IG
Sbjct: 118 WDDLLAA--TEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGL 175
Query: 412 RTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
DR + LPL H A + G +L G
Sbjct: 176 TPNDRLLSYLPLAHIAERVIVEGGSLYSG 204
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-15
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 29/217 (13%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q ++ + +A AQG++ G VAL+ +N E V L LG A++N L +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
N E T+ ++++ L L D + S + R +A
Sbjct: 61 N------------------ERTNQLEDLDVQLLLTDSLLE-EKDFQADS--LDRIEAAGR 99
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414
SLS + ++TSGTTG PKA + +Y +GF
Sbjct: 100 -------YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED 152
Query: 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451
D + LPLYH +G ++ + + LI G + I KF+
Sbjct: 153 DNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKFNQ 188
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 524 GMAAI-LDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAA+ L + D A + + + LP+YARPLF+R +E TGT+K +K DL+KEGFD
Sbjct: 384 GMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFKYQKTDLRKEGFD 443
Query: 583 P 583
P
Sbjct: 444 P 444
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 63/278 (22%), Positives = 93/278 (33%), Gaps = 27/278 (9%)
Query: 206 KDLTIADIFREHAVRSPNKVIFM-FENTEW---TAQQVEAYSNRVANFFLAQGLKKGDSV 261
+ T+ E P+ V M E W T +++ +A+ L+ G+ GD V
Sbjct: 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRV 73
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA-ELTDAVQ 320
A+ NRPE+ L + LG ++ I L + +N + EL D V
Sbjct: 74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVL 133
Query: 321 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP-----LLSEVPTSPPSLSYRVGVQDK 375
+ V L + + P L D
Sbjct: 134 PVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDL 193
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-GFRTKDRFYTP-------LPLYHTA 427
IYTSGTTG PK +++ HR + Q+ G P LPL H
Sbjct: 194 ATIIYTSGTTGTPKGVMLT-HR------NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIF 246
Query: 428 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
A G AL G V+ K D+ + + TV
Sbjct: 247 ERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTV 282
|
Length = 613 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 13/264 (4%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
D ++AD +++ A P+K I + +N +T ++ ++R+AN+ LA+G++ GD VA
Sbjct: 22 DASLADYWQQTARAMPDK-IAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQ 80
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL--TDAVQEI 322
L EF ++L K+G ++ + + R+ L+ +N F T V I
Sbjct: 81 LPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLI 140
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ-DKLIYI-Y 380
L + + D + P + +LS LS++ L+ + D+L + +
Sbjct: 141 -LPLQNQLPQLQQIVGVDKLA---PATSSLS--LSQIIADYEPLTTAITTHGDELAAVLF 194
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSGT GLPK +++++ A ++ +D F P PL H G + + G
Sbjct: 195 TSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 441 CCVVIRKKFSASNYFSDVCKYKCT 464
V+ F+ + + + +CT
Sbjct: 255 ARSVLLDIFTPDACLALLEQQRCT 278
|
Length = 547 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 6e-15
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 524 GMAA-ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAA IL D+ + + +++ LP+YARP F+R +E+TGT+K +K+ L +EGF+
Sbjct: 450 GMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKVRLVEEGFN 509
Query: 583 PNVIQDRLYYL-SSKGVYEELTPEVY 607
P++I D LY+L + + Y LT E+Y
Sbjct: 510 PSIISDPLYFLDNREKSYVPLTQEIY 535
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 6e-15
Identities = 54/213 (25%), Positives = 80/213 (37%), Gaps = 6/213 (2%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A R P+ + + T + +A+ GL +G+ VA+ L+ R E V G
Sbjct: 10 AARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFG 69
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW-S 336
+ G + IN L+ + H + V + +E D + L
Sbjct: 70 AALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD 129
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
P S P + LL+ PP V D +YTSG+TG PK V+S H
Sbjct: 130 PAHASEGHPGEEPASWPKLLALGDADPPH---PVIDSDMAAILYTSGSTGRPKGVVLS-H 185
Query: 397 RYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAG 428
R G ++A + R DR LPL G
Sbjct: 186 RNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG 218
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 6e-15
Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 58/322 (18%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T +++ ++R+A G++ GD VA L N EFV ++L +++G + I R+
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
L + A
Sbjct: 63 RELGFILRQARARVLF-------------------------------------------- 78
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
VP Y + D + + YTSGTTG PK + +++ + ++G
Sbjct: 79 ----VPDEFRGFDY-AAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP 133
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC 473
D P PL H G + L+ G VV++ ++ + + ++ T
Sbjct: 134 DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFL 193
Query: 474 RYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFR---IAQIGEFYGATE-GMAAIL 529
LL+ + ++R+ G + E R A++ YG TE + +
Sbjct: 194 ADLLAAADAAGPDLPSLRVFLCGG--APVPRELARRAAEALGAKVVRAYGMTEVPLVTVG 251
Query: 530 DINKSLDVSAVSEGIKKALPSY 551
+ D A ++G +P
Sbjct: 252 TPDDPDDKRAATDGR--PVPGV 271
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 68/310 (21%), Positives = 112/310 (36%), Gaps = 52/310 (16%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++E R+A A+G +KGD V L+ N EF ++L + G + N
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ + +G I +EL + + ++ V L S S A+
Sbjct: 94 AEIAKQVKDSGAKLAITTSELAEKLASLAL---EPVVLL---------DSADDGSAAIDD 141
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY---------FLGGAI 405
LL PP + + D Y+SGTTG K +++ HR G
Sbjct: 142 LLFADEPEPPVV--VIKQDDVAALPYSSGTTGRSKGVMLT-HRNLIANVAQLVAGEGPNF 198
Query: 406 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ D LP++H G + + L G VV+ +F + + + KYK T
Sbjct: 199 DRE------DVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVT- 251
Query: 466 GQYIGEMCRYLLSTP-----------EKPEDKAHNVRLMFGNG-LRPQIWSEFVDRFRIA 513
+L P D + ++ G L ++ F RF
Sbjct: 252 ---------HLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGV 302
Query: 514 QIGEFYGATE 523
++G+ YG TE
Sbjct: 303 ELGQGYGMTE 312
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 107 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIFTDVFEIGDSAFLSGD 162
K G C R EPG +G++ N + GY+ NE + K+ DVF GD + +GD
Sbjct: 286 PKTGFCVRAPVGEPGEMLGRVRFKNRE-LFQGYLKNEDATESKLLRDVFRKGDIWYRTGD 344
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
LL D G YF DR GDTF
Sbjct: 345 LLRQDADGRWYFLDRLGDTF 364
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 3e-14
Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 62/279 (22%)
Query: 207 DLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
+ TI + A R P++ +++ + WT ++ + +A LA G++KGD V +
Sbjct: 15 EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW 74
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---------YGAEL 315
N PE+V +K+G I IN R + L + +N +G A I Y A L
Sbjct: 75 APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAML 134
Query: 316 TDAVQEISTSLGSNVK--------------------LFSWSPDT--DSSSSPVPRSQALS 353
+ E++T ++ + ++ + + A
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNF-DELLALGRAVDDAELAARQ 193
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-----YFLGGAIAYQ 408
L P P + +Q YTSGTTG PK A ++ HR YF+G A
Sbjct: 194 ATLD--PDDP------INIQ------YTSGTTGFPKGATLT-HRNILNNGYFIGEA---- 234
Query: 409 IGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALIFGCCVVI 445
+ +DR P+PLYH G M +G + G +V
Sbjct: 235 MKLTEEDRLCIPVPLYHCFG--MVLGNLACVTHGATMVY 271
|
Length = 559 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-14
Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 34/336 (10%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLENRPEFVCLW 275
A R P+K +F + +++ + R+A + L Q G++KGD V L ++N P+FV +
Sbjct: 20 ARRYPDKTAIVFYGRAISYRELLEEAERLAGY-LQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFS 334
+ + + +N R+ L H + +G I G+EL V +L +V +
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 335 WSPDTDSSSSPVP-----RSQALSPLLSEVPTSP---------PSLSYRVGVQDKLIYIY 380
+S D + + R++ L+ + G D + Y
Sbjct: 139 YS-DYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPY 197
Query: 381 TSGTTGLPKAAVISNHR---YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
TSGTTG+PK + HR +G + + LPL+H G + +
Sbjct: 198 TSGTTGVPKGC-MHTHRTVMANAVGSVLWSNSTP--ESVVLAVLPLFHVTGMVHSMNAPI 254
Query: 438 IFGCCVVIRKKF---SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
G VV+ ++ +A+ +Y+ T I M L++P E ++R +
Sbjct: 255 YAGATVVLMPRWDREAAARLIE---RYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIG 311
Query: 495 GNGLR-PQIWSE-FVDRFRIAQIGEFYGATEGMAAI 528
G G P+ +E + + + E YG TE MA
Sbjct: 312 GGGAAMPEAVAERLKELTGLDYV-EGYGLTETMAQT 346
|
Length = 546 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 7/218 (3%)
Query: 214 FREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
F E A + P++ ++ + +T ++ R+A+ G+ KGD VA++ N P +
Sbjct: 9 FLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAML 68
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
G+ G + +N L + + +N + E +E L + +
Sbjct: 69 EAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEII 128
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAA 391
+ ++ LL+ P L + I + YTSGTTG PK
Sbjct: 129 DTEIIVISPAAEDSEEGDYED-LLAG--GDPDPLPIPPDDEWDPISLNYTSGTTGNPKGV 185
Query: 392 VISNHRYYFLGGAIA-YQIGFRTKDRFYTPLPLYHTAG 428
V + HR +L + G + + LP++H G
Sbjct: 186 VYT-HRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNG 222
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 19/347 (5%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T+A + HA P+ V + E+ + ++ A +R+A + AQG+++GD VA+ L N
Sbjct: 11 TLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNC 70
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQEIS 323
E+V L+L ++LG +N R + + H + + G + + +
Sbjct: 71 IEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVP 130
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVP-RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY-T 381
++ + D + ++P P + P P + R D ++ T
Sbjct: 131 PDALPPLRAIA-VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTT 189
Query: 382 SGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
SGTT PK + HR L AIA G+ LP G + +G AL
Sbjct: 190 SGTTSGPKLVL---HRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLG-ALA 245
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G +V F A+ + +++ T EM R +L T + D F +
Sbjct: 246 GGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFAS-F 304
Query: 499 RPQIWSEFVDRFRI--AQIGEFYGATEGMAAILDINKSLDVSAVSEG 543
P E R + YG++E A + + VS EG
Sbjct: 305 APA-LGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEG 350
|
Length = 540 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 69/302 (22%), Positives = 106/302 (35%), Gaps = 73/302 (24%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E+T Q++ SNR+AN G+++GD V + L PE L + KLG ++ ++
Sbjct: 5 EEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
+++ H + +G + TD S P
Sbjct: 65 FGPDAVEHRLRDSGARVLV----------------------------TDGSDDPA----- 91
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 411
I IYTSGTTG PK A+ HR LG ++ F
Sbjct: 92 -------------------------ILIYTSGTTGPPKGALHG-HR-VLLGHLPGVELYF 124
Query: 412 ----RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTV 465
R D F+TP G + AL FG VV ++F F+ + +Y T
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGN---GLRPQIWSEFVDRFRIAQIGEFYGA 521
+ + + +R + G G W+ D + + EFYG
Sbjct: 185 AFLPPTALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWAR--DELGLT-VNEFYGQ 241
Query: 522 TE 523
TE
Sbjct: 242 TE 243
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 24/311 (7%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
HA R+P++ ++ + E + + + A A+G+ +GD VAL+++N F+ L
Sbjct: 11 HARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAF 70
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 336
S LG + IN+ L + + + + AG + E + +L + + +
Sbjct: 71 AASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-----DAIVALETPKIVIDAA 125
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
DS + P+ R+ +YTSGTT PK + S
Sbjct: 126 AQADSRRLAQGGLEI-----PPQAAVAPTDLVRL--------MYTSGTTDRPKGVMHSYG 172
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI-GQALIF-GCCVVIRKKFSASNY 454
++ +G +R PLYH GA + G A+++ G + I ++F
Sbjct: 173 NLHWKSIDHVIALGLTASERLLVVGPLYHV--GAFDLPGIAVLWVGGTLRIHREFDPEAV 230
Query: 455 FSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP--QIWSEFVDRFRI 512
+ + +++ T M +L+ P++ ++ G G + +F F
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTR 290
Query: 513 AQIGEFYGATE 523
A+ + YG TE
Sbjct: 291 ARYIDAYGLTE 301
|
Length = 497 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 8e-13
Identities = 76/331 (22%), Positives = 131/331 (39%), Gaps = 39/331 (11%)
Query: 209 TIADIFREHAVRSPNKVIFM--FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A+G++ VA++
Sbjct: 2 TVFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAP 61
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY--GAELTDAVQEIST 324
N + V L L +LG + AL+N L+ + I ++A + A++ DA+ +
Sbjct: 62 NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQ--- 118
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS V++ + D P ++ P + + P P + YTSGT
Sbjct: 119 -SGSGVRVLALG-DLVGLGEP----ESAGPPIEDPPREP---------EQPAFVFYTSGT 163
Query: 385 TGLPKAAVISNH----RYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPK AVI R F+ + Q G R + +PLYH G + AL
Sbjct: 164 TGLPKGAVIPQRAAESRVLFM----STQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALA 219
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
V+ ++F ++ + + + T ++ + P K + H + F
Sbjct: 220 LDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEH---VTF 276
Query: 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525
P E V++ + YG TE M
Sbjct: 277 AGATMPDAVLERVNQHLPGEKVNIYGTTEAM 307
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
HA+ P+ F T ++++ +A +G+ GD V +++ NR EFV L
Sbjct: 26 HALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD---AVQEISTSLGSNVKLF 333
+ LG I +N L + ++ G + A L AV++I L + V
Sbjct: 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAG 145
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393
S D+ + + ++P P+L +YTSGTTG PK AV+
Sbjct: 146 GSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPAL-----------IMYTSGTTGRPKGAVL 194
Query: 394 SNHRY--------YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG-GAMCIGQALIFGCCVV 444
++ G I +GF +PL+H AG G+M G L+ G V
Sbjct: 195 THANLTGQAMTCLRTNGADINSDVGFVG-------VPLFHIAGIGSMLPG--LLLGAPTV 245
Query: 445 I 445
I
Sbjct: 246 I 246
|
Length = 542 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 57/223 (25%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A P + + T QQ+ A +++A F QG+ +G VAL +N PE + +L
Sbjct: 13 AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72
Query: 278 LSKLGVITALIN----HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
L + G +N L + LL + + + L
Sbjct: 73 LLQCGARVLPLNPQLPQPLLE-ELLPSLTLD------FALVLEGENT------------- 112
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 392
+S T V + A++ P ++ TSG+TGLPKAAV
Sbjct: 113 -FSALTSLHLQLVEGAHAVAWQ----PQRLATM------------TLTSGSTGLPKAAVH 155
Query: 393 -ISNHRYYFLGGAIAYQIG------FRTKDRFYTPLPLYHTAG 428
H +A G F +D + LPL+H +G
Sbjct: 156 TAQAH--------LASAEGVLSLMPFTAQDSWLLSLPLFHVSG 190
|
Length = 458 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 26/283 (9%)
Query: 198 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
W + +D T+ DI +HA R P+++ + + +++ ++R+A
Sbjct: 11 WPEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGL 70
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI--TALINHNLRQNSLLHCINIAGVSA 308
G+K GD+V + L N EF + L +LGV AL +H R + L + +
Sbjct: 71 RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSH--RASELGAFASQIEAAL 128
Query: 309 FI--YGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
I D + + L ++ V + P P P
Sbjct: 129 LIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPA-- 186
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
+ + + GTTG PK +++ YY+ A A GF + + LP H
Sbjct: 187 ----DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHN 242
Query: 427 AGGAMC----IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ +G + G VV+ S F + ++ TV
Sbjct: 243 F--PLSSPGALG-VFLAGGTVVLAPDPSPELCFPLIERHGVTV 282
|
Length = 542 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 57/294 (19%)
Query: 200 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 255
A R +K D + DI R+ A R P+ + + N +W+ ++++ ++ +A G+
Sbjct: 11 AERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGI 70
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHNLR---------QNSLLHCINIA 304
K+GD+ + L N EF ++ L KLGV + AL +H + +L I
Sbjct: 71 KQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALY--IIDR 128
Query: 305 GVSAFIYGAELTDAVQEISTSLGSNV-------KLFSW--SPDTDSSSSPVPRSQALSPL 355
S F Y ++ T V +LF W SP P +
Sbjct: 129 AHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQ 188
Query: 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKD 415
LS G+TG PK +++ YY+ +
Sbjct: 189 LS------------------------GGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQT 224
Query: 416 RFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
R+ LP H ++ GA+ + A G CVV+ S ++ F + ++K TV
Sbjct: 225 RYLCALPAAHNYPLSSPGALGVFYA---GGCVVLAPDPSPTDCFPLIERHKVTV 275
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 7e-12
Identities = 70/279 (25%), Positives = 109/279 (39%), Gaps = 45/279 (16%)
Query: 217 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVC 273
HA +P++ VI + + +Q++ S +A GL+ GD VAL+ +N PE V
Sbjct: 6 HAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVV 65
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
LW L ITA INH+L + + +G + A L ++ L +
Sbjct: 66 LWAALRSGLYITA-INHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRL--- 121
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA--- 390
S+ + D S P L+E P + +Y+SGTTG PK
Sbjct: 122 SFGGEIDGFGSFEAALAGAGPRLTEQPCGA-------------VMLYSSGTTGFPKGIQP 168
Query: 391 ------------AVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+++ R ++ D +Y+ P+YH A C
Sbjct: 169 DLPGRDVDAPGDPIVAIARAFY---------DISESDIYYSSAPIYHAAPLRWC-SMVHA 218
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
G VV+ K+F A V +Y+ TV Q + M LL
Sbjct: 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLL 257
|
Length = 501 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 7e-12
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 23/251 (9%)
Query: 220 RSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
R P++ + +T T Q+ +R F A GL GD+VAL+ NRPE +
Sbjct: 24 RYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ 83
Query: 280 KLGV-ITALINHNLRQNSL---LHCINIAGVSAFIY-GAELTDAVQEISTSLGSNVKLFS 334
G+ TAL H L SL + + AG+S I A + + + S + +
Sbjct: 84 LAGLRRTAL--HPL--GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLT 139
Query: 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVI 393
P D LL+ P+ + + + YT GTTG PK +
Sbjct: 140 LGPVPDGVD-----------LLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMG 188
Query: 394 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
++ + + + RF PL H AGGA L+ G V++ KF +
Sbjct: 189 THRSIATMAQIQLAEWEWPADPRFLMCTPLSH-AGGAF-FLPTLLRGGTVIVLAKFDPAE 246
Query: 454 YFSDVCKYKCT 464
+ + + T
Sbjct: 247 VLRAIEEQRIT 257
|
Length = 524 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 8e-12
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +++ +NR AN A G+ GD V L+L + PE V +L K G + +N L
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 294 QNSLLHCINIAGVSAFIYGAE 314
L H ++ +G + + A+
Sbjct: 71 PQDLEHILDDSGAALLVTEAD 91
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQ 435
IYTSGTTG PK V+++ A+ + D LPL+H G C
Sbjct: 94 IYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHC--- 150
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE---KPEDKAHNVRL 492
L G V +F + + TV + + LL E A N+RL
Sbjct: 151 PLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNLRL 210
Query: 493 MF-GNG-LRPQIWSEFVDRF--RIAQIGEFYGATE-GMAA 527
G+ L + + +R + E YG TE GMA
Sbjct: 211 FVSGSAALPVPVLERWEERTGHTLL---ERYGMTETGMAL 247
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 25/301 (8%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+T VE S RVA G+++GD V L+L N PEFV +LG S+ G +T N
Sbjct: 50 VYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY 109
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
+ +G I + D ++ ++ V + + + +QA
Sbjct: 110 TPAEIAKQAKASGAKLIITQSCYVDKLKGLAE--DDGVTVVTIDDPPEGCLHFSELTQAD 167
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---- 408
L EV SP D + Y+SGTTGLPK +++ H+ L ++A Q
Sbjct: 168 ENELPEVEISP---------DDVVALPYSSGTTGLPKGVMLT-HKG--LVTSVAQQVDGE 215
Query: 409 ---IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ F + D LP++H + L G ++I KF + ++K T+
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTI 275
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDRFRIAQIGEFYGAT 522
++ + + +P + ++R M +G P ++ F + A +G+ YG T
Sbjct: 276 APFVPPIVLAIAKSPVVEKYDLSSIR-MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMT 334
Query: 523 E 523
E
Sbjct: 335 E 335
|
Length = 537 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 42/250 (16%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTE----WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
T+ + + A +P + I + + ++ + R+ A GLK GDSV L
Sbjct: 11 TLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQ 70
Query: 265 LENRPEFV-CLW---LGLSKLGVITALI-------NHNLRQNSLLHCINIAGVSAFIYGA 313
LE +FV W LG G + + N L + + G + A
Sbjct: 71 LERNEDFVTAFWACVLG----GFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDA 126
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
L A+ + T G R A+ L S P + +
Sbjct: 127 ALVAALAGLRTRAGL----------------EALRVLAIEELRS---APPDAPLHPARPD 167
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
D + + TSG+TG+PK V++ HR G + GF D +PL H G M
Sbjct: 168 DPALLLLTSGSTGVPKCVVLT-HRNILARSAGTVQVN-GFTPDDVSLNWMPLDHVGGIVM 225
Query: 432 CIGQALIFGC 441
+ + GC
Sbjct: 226 LHLRDVYLGC 235
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 8e-11
Identities = 68/321 (21%), Positives = 118/321 (36%), Gaps = 78/321 (24%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 307
+ + K+G+++ +ML + L L G + ++N + L AG+
Sbjct: 24 IKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVI 83
Query: 308 ---AFIYGAELTDAV-----------QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 353
AF+ +L V +++ + KL ++ + L
Sbjct: 84 TSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLKAFL------------AAKLP 131
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
P L + + D + ++TSG+ GLPK V+S+ IA I T
Sbjct: 132 PALLRLFLAGAKPD------DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNT 185
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD----------VCKYKC 463
+D LPL+H G + + L+ G VV Y+ + + YK
Sbjct: 186 EDVLLGALPLFHAFGLTVTLLLPLLTGLRVV---------YYPNPLDAKKIAELIRDYKA 236
Query: 464 TVGQYIGEMCRYLLSTPE---------KPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRI 512
T+ L TP PED + ++RL+ L F ++F I
Sbjct: 237 TI----------LCGTPTFLRGYARNAHPEDFS-SLRLVVAGAEKLPEATRELFEEKFGI 285
Query: 513 AQIGEFYGATEGMAAILDINK 533
+I E YGATE + ++ +N
Sbjct: 286 -RILEGYGATE-CSPVISVNT 304
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 25/207 (12%)
Query: 200 ARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGD 259
+RRV + +A R+ A R P+++ ++ + WT ++++A + +A A+G++KGD
Sbjct: 3 SRRV----MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGD 58
Query: 260 SVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA---EL 315
+ + N + F ++ +LG + N + + + +G A I A E
Sbjct: 59 RILVHSRNCNQMFESMFAAF-RLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEH 117
Query: 316 TDAVQEISTSLGSNVKLFS--WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
AV+ S L V + D ++ L++ + + + V
Sbjct: 118 AAAVRAASPDLTHVVAIGGARAGLDYEA-------------LVARHLGARVANA-AVDHD 163
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYF 400
D + +TSGTTG PKAAV+++ + F
Sbjct: 164 DPCWFFFTSGTTGRPKAAVLTHGQMAF 190
|
Length = 528 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 9e-11
Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 73/239 (30%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
A P+ V F + T +++ +N++A+ ++ G++ GD VAL LE WL
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLER-----SPWL 55
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 336
++ L V+ A I + + +Q I G+ V L S
Sbjct: 56 YVAILAVLKA-----------------GAAYVPIDPSAPVERLQFIIEDSGATVVLTS-- 96
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
SP +Y IYTSG+TG PK VI++
Sbjct: 97 -------------------------SPDDPAY---------VIYTSGSTGKPKGVVITHR 122
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA----MCIGQ---ALIFGCCVVIRKK 448
A +G R DR + + I + L+ G +VI +
Sbjct: 123 NICNFLRAEGAILGIRPGDRVL--------QFASIAFDVSILEIFTTLLAGGTLVIPPE 173
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 9e-11
Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 34/229 (14%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
+T ++A S R+AN +A G+K GD VA+ +E PE + L+L + G + +N
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 353
L + I A + + + +I+ + G+ + + D D + S + + A
Sbjct: 89 LAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGA-PHVETL--DADGTGSLLEAAAAAP 145
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV------ISN----HRYYFLG 402
VP D L I YTSGTTG K A+ +SN Y+
Sbjct: 146 DDFETVPRGA----------DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW--- 192
Query: 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451
F D LP++HT G + AL+ G ++ KF
Sbjct: 193 -------RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP 234
|
Length = 504 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 424
+ + I+TSG+TG PKA V + NH G A +G D + LPL+
Sbjct: 71 DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARG--SAENLGLTPDDNWLLSLPLF 128
Query: 425 HTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE 484
H G + ++L+ G +V+ KF A + + T + + LL
Sbjct: 129 HV-SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLE--SLGA 185
Query: 485 DKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEF--YGATEGMAA 527
++R + G I +++ R I + YG TE A+
Sbjct: 186 RWLSSLRAVLLGGAP---IPPSLLEQARQRGIPLYPTYGMTE-TAS 227
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 56/251 (22%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 197 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFM------FENTEWTAQQVEAYSN 244
L RR A D TI D P+K +T +++ A +
Sbjct: 7 LLPPRRAASIAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVD 66
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304
RVA G+ +GD V+ L N EF L+L S++G + + R+ L + A
Sbjct: 67 RVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHA 126
Query: 305 GVSAFIYGAELTD-----AVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ + + L + + D S + ++P +
Sbjct: 127 ESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEAL----LITPAWEQE 182
Query: 360 PTSPPSL-SYRVGVQDKLIYIYTSGTTGLPKAA------VISNHRYY------------F 400
P +P L R G D IYTSGTTG PK +++N Y
Sbjct: 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVIL 242
Query: 401 LGGAIAYQIGF 411
+ +A+Q GF
Sbjct: 243 MASPMAHQTGF 253
|
Length = 547 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 12 GAIGFVSRLIPTIYP--ISIIRVDPVTSEPIR-NKKGLCTRCEPGEPGVFIGKIVPSNPA 68
GAIGF + + ++++DP T PIR K G C R GEPG +G++ N
Sbjct: 253 GAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRE 312
Query: 69 RAYLGYV-NEKDSAKKIVTDVFEIGDSAFLS 98
+ GY+ NE + K++ DVF GD + +
Sbjct: 313 -LFQGYLKNEDATESKLLRDVFRKGDIWYRT 342
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 4e-10
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T Q+++ +++A A G+++GD VAL+ +N EF+ L+L L +LG + +N L
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLP 61
Query: 294 QNSL 297
Q L
Sbjct: 62 QEEL 65
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-10
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 39/213 (18%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFV-----CLWLGLSKLGVITALINHNLRQNS-LL 298
+A A G GD V L+ +FV CL+ G + V R + L
Sbjct: 35 AIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGA--IAVPAPPPRRLGRHLARLA 91
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358
+ AG A + + + A++ + + + L + D + ++ R
Sbjct: 92 AILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAADWR---------P 142
Query: 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFR 412
P P +++ +Q YTSG+TG PK +++ N R AIA G
Sbjct: 143 PPPDPDDIAF---LQ------YTSGSTGAPKGVMVTHGNLLANLR------AIARAFGLD 187
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
D + LPLYH G + Q L G VV+
Sbjct: 188 PDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVL 220
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 1e-09
Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 21/258 (8%)
Query: 210 IADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
IAD+ A R P ++ + + + + + +A GL GD VAL + +
Sbjct: 18 IADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGS 77
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
EFV L S+ ++ ++ L AG L DA +
Sbjct: 78 NAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVV-----LIDADGPHDRAEP 132
Query: 328 SNVKLFSWSPDTDS-SSSPVPRSQALSPLLSEV--PTSPPSLSYRVGVQDKLIYIYTSGT 384
+ W P T + P LS L PT S + D +I ++T GT
Sbjct: 133 TT----RWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMI-MFTGGT 187
Query: 385 TGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
TGLPK ++ AI Y++ R D +PLYH G + L G
Sbjct: 188 TGLPKMVPWTHANIASSVRAIITGYRLSPR--DATVAVMPLYHGHGLIAALLATLASGGA 245
Query: 443 VVI--RKKFSASNYFSDV 458
V++ R +FSA ++ D+
Sbjct: 246 VLLPARGRFSAHTFWDDI 263
|
Length = 534 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 1e-09
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 32/179 (17%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ + ++ + T ++ +NR+A A+G+ GD VAL+LE PE V L + K
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 282 GVITALINHNL---RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD 338
G ++ R +L +G + L + + + D
Sbjct: 61 GAAYVPLDPAYPAERLAFMLED---SGARVLLTDESLAPLARAD----QLPLVILEEELD 113
Query: 339 TDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+ + P P L+Y +YTSG+TG PK V HR
Sbjct: 114 AEDAGPPAP------------AVDADDLAY---------VMYTSGSTGRPK-GVAVPHR 150
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 67/293 (22%), Positives = 104/293 (35%), Gaps = 49/293 (16%)
Query: 184 ALKSRA-LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
A + LQ Y W + D T+ D++ R ++ F T ++
Sbjct: 9 AFADKPWLQSYAP--WTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQ 66
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALIN-----HNLRQNSL 297
R A A G++ GD VA++L N P+ + + + +LG + N H L
Sbjct: 67 VRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE 126
Query: 298 LHCINIAGV-----SAF-----------IYGAELTDA---VQEISTSL------GSNVKL 332
H +A V I + A +Q ++ L + L
Sbjct: 127 DHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL 186
Query: 333 FSWSPDTDSSSSPVPRSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA 390
+P T VP + S P R D + +YTSGTTG PK
Sbjct: 187 TGPAPGT------VPWETLVDAAIGGDGSDVSHP----RPTPDDVALILYTSGTTGKPKG 236
Query: 391 AVISNHRYYFLGGAI--AYQIGFRTKD-RFYTPLPLYHTAGGAMCIGQALIFG 440
A ++ HR F A A+ G R LP++H G +C+ A+ G
Sbjct: 237 AQLT-HRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIG 288
|
Length = 573 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 218 AVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
AV P E + +++A S+ +A+ A G+ +G LM+ EF L
Sbjct: 24 AVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
L K G + L++ + +L C+ A AFI G + +LF W
Sbjct: 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFI-GIPKAHLAR----------RLFGW 132
Query: 336 SPDTDSSSSPVPRSQALS-PLLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAA 391
+ V L+ + + + + D ++TSG+TG PK
Sbjct: 133 GKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 392 VISNHR 397
V + H
Sbjct: 193 VYT-HG 197
|
Length = 552 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
WT +++ S+R ANF G+ +GD VA++L PE + LG KLG + L
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 294 QNSLLHCINIAGVSAFIYGAE 314
+ + + AG A + A+
Sbjct: 61 PKDIRYRLERAGARAIVTSAD 81
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 223 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
+++ + T +++A S R+A LA GL GD VA++ E+V L+L + + G
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 283 VITALINHNLRQNSLLHCINIAGVSAFIYGA 313
+ +N + L + ++ + S + A
Sbjct: 61 GVAVPLNPSYPAAELAYILSDSQPSLLVDPA 91
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 9e-09
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 48/221 (21%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A +A AQ + +G V ++ +N PE L +KLG I + + NL ++
Sbjct: 46 ELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAI 105
Query: 298 LHCINIAGVSAFIYG----------AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
I +A + E ++ I+ + + + S D S
Sbjct: 106 ERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAAS------ 159
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
G +D L I+TSGTTG PKA +++N R +F I
Sbjct: 160 ------------LAGNADQ----GSEDPLAMIFTSGTTGEPKAVLLAN-RTFFAVPDILQ 202
Query: 408 QIGFRTKD-----RFYTPLPLYHTAG----------GAMCI 433
+ G Y+PLP H G G +C+
Sbjct: 203 KEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCV 243
|
Length = 540 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 20/222 (9%)
Query: 216 EHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
EHA R ++ I +T R+AN + G+K GD VA + N
Sbjct: 3 EHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHR 62
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV 330
+ L+ + +G + +N L + + IN A + ++ I+ L + V
Sbjct: 63 HLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPT-V 121
Query: 331 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK--LIYI-YTSGTTGL 387
K D D + +P A LL E Y D+ + YTSGTTG
Sbjct: 122 KAVVVYDDADMPETSLPNVYAYEELLEEESP-----EYEWPELDENTAAGLCYTSGTTGN 176
Query: 388 PKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPL-PLYH 425
PK V S HR L A+ +G D P+ P++H
Sbjct: 177 PKGVVYS-HRSLVLHTLASALPDSLGLSESDT-VLPVVPMFH 216
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 60/317 (18%), Positives = 105/317 (33%), Gaps = 31/317 (9%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ A + P + +F + ++ +NR+A+ +A G+ V + +E E V
Sbjct: 517 LIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMV 576
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
L + K G ++ Q+ L + ++ +GV + A + L S
Sbjct: 577 VGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGV-RLLLTQSHLLAQLPVPAGLRS---- 631
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
D + + +P EV P +L+Y IYTSG+TG PK
Sbjct: 632 ----LCLDEPADLLCGYSGHNP---EVALDPDNLAY---------VIYTSGSTGQPKGVA 675
Query: 393 ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---F 449
IS+ IA ++ D G G AL G + +
Sbjct: 676 ISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFG-ALASGATLHLLPPDCAR 734
Query: 450 SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR---PQIWSEF 506
A + + + TV + + + LL + + G L+
Sbjct: 735 DAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRAL 794
Query: 507 VDRFRIAQIGEFYGATE 523
R+ YG TE
Sbjct: 795 GPGARLINH---YGPTE 808
|
Length = 3956 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+ QQ+ + +A A G+K+ +AL L+N ++V L + G++ I H
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
H +N AG I +D + +++L + +
Sbjct: 59 SAQQTQHLLNDAGADLLI-----SDD-PDAASALHTPFATLGEDL---------YIALRP 103
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISN 395
S E+P G K+ YTSG+TG PK +S
Sbjct: 104 SANPVELPA---------GTA-KI--TYTSGSTGQPKGVCLSA 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 52/225 (23%)
Query: 233 EW-TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
EW + ++VE + + + A GLK GD + + ENRPE++ ++ +
Sbjct: 4 EWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDT 63
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
L + ++ + +N EIS VK++S+
Sbjct: 64 LGEEAIEYILNET----------------EISIVFCDAVKVYSFE--------------E 93
Query: 352 LSPL--LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 409
L L ++VP +PP D +YTSGTTG PK ++++ I +
Sbjct: 94 LEELGKKNKVPPTPPKPE------DLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIV 147
Query: 410 G--FRTKDRFYTPLPLYH-----------TAGGAMCIGQALIFGC 441
D + + LPL H GG + G
Sbjct: 148 PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGL 192
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 25/241 (10%)
Query: 183 PALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
P L + Q+ L L A+ D T+ +F A R+P F + +++A
Sbjct: 2163 PLLAAAEQQQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQTLSYAELDAR 2222
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+NR+A +G+ V L LE E V L + K G ++ L + I
Sbjct: 2223 ANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIE 2282
Query: 303 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+G+ + L +A+ E+ + W + D + L+ +
Sbjct: 2283 DSGIGLLLSDRALFEALGELPAGVA------RWCLEDD------------AAALAAYSDA 2324
Query: 363 P-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKD---RFY 418
P P LS Q + IYTSG+TG PK V+S+ A+ + G R D FY
Sbjct: 2325 PLPFLS---LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFY 2381
Query: 419 T 419
+
Sbjct: 2382 S 2382
|
Length = 4334 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 46/326 (14%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ I +++HA PNK+ + T + +VAN+ L + K ++A++LEN
Sbjct: 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANW-LNEKESKNKTIAILLEN 59
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA--VQEISTS 325
R EF+ L+ G + G ++ +Q+ L + I+ + T+ + ++
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV-----TERYKLNDLPDE 114
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGT 384
G +++ W + P+ + VQ+ Y+ +TSG+
Sbjct: 115 EGRVIEIDEWKRMIEKYL--------------------PTYAPIENVQNAPFYMGFTSGS 154
Query: 385 TGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT--AGGAMCIGQALIFGCC 442
TG PKA + + + + + +D L H+ GA+ L G
Sbjct: 155 TGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAI---STLYVGQT 211
Query: 443 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 502
V + +KF + + +V + M L E N + +G +
Sbjct: 212 VHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIE----NKMKIISSGAK--- 264
Query: 503 WS-----EFVDRFRIAQIGEFYGATE 523
W + + F A++ EFYGA+E
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASE 290
|
Length = 487 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 33/235 (14%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E + ++ + R+A G+K GD VA L N PE V L + +G I + + +
Sbjct: 85 REISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 292 LRQNSLLHCIN------IAGVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS 342
++L + V ++Y + + + EI L S ++ P S
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS-LEAVVVVPYLSSD 203
Query: 343 SSPVPRS-QALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 400
+ P AL+ L S L + R+ L +Y+SGTTGLPK V H
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV---HGA-- 258
Query: 401 LGGAIAYQI-------GFRTKDRFYTPLPLYHTAGGAMC---IGQALIFGCCVVI 445
GG + + R DR + Y+T G M + L+ G +V+
Sbjct: 259 -GGTLLQHLKEHGLHCDLRPGDRLF-----YYTTTGWMMWNWLVSGLLSGATLVL 307
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 36/242 (14%)
Query: 214 FREHAVR---SPNKVIFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ E+ +R + ++++ E E T ++ +A A G++ GD V+ L N
Sbjct: 89 YAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN------IAGVSAFIYGAE---LTDA 318
P+ V L + +G I + + + +L + V + Y + D
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 319 VQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
V E+ L + V + ++ + + + L + + ++ L
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFE-QLPFDHPL 267
Query: 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-------GFRTKDRFYTPLPLYHTAGG 429
+++SGTTGLPK V S GG + + DR Y+T G
Sbjct: 268 WILFSSGTTGLPKCIVHSA------GGTLVQHLKEHGLHCDLGPGDRL-----FYYTTTG 316
Query: 430 AM 431
M
Sbjct: 317 WM 318
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 18/218 (8%)
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYG 312
G+++GD V L+L N F ++L + LG I +N + +SL + S +
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS---SSLGEIKKRVVDCSVGLAF 144
Query: 313 AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372
+ V+++S LG V + D DS P+ L + P +
Sbjct: 145 TS-PENVEKLS-PLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPV-----IKQ 197
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI-----AYQIGFRTKDRFY-TPLPLYHT 426
D +Y+SGTTG K V++ HR + A Q + D Y LP++H
Sbjct: 198 DDVAAIMYSSGTTGASKGVVLT-HRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHI 256
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
G ++ + L G +V+ ++F AS+ + ++K T
Sbjct: 257 YGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVT 294
|
Length = 560 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+R+A +G++KGD VAL ++N P+FV + + + G + +N R+ L H +N
Sbjct: 11 VDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILN 70
Query: 303 IAGVSAFIYGAELTD 317
+G I G+EL D
Sbjct: 71 DSGARVLIVGSELDD 85
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 344 SPVPRSQALSPLLSEVPTSPPSLSYRVGV-----QDKLIYIYTSGTTGLPKAAVISNHR- 397
+P+ R L +L++ RV + D + YTSGTTGLPK + + HR
Sbjct: 57 NPMNREAELEHILNDSGA-------RVLIVGSELDDVAVIPYTSGTTGLPKGCMHT-HRT 108
Query: 398 --YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 455
A G LPL+H AG + + G +V+ ++
Sbjct: 109 VLATAAASAAWS--GLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAA 166
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTPE 481
+ +Y+ T I M LL+ P
Sbjct: 167 RAIERYRVTHWTNIVTMVVDLLAHPR 192
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 58/265 (21%), Positives = 99/265 (37%), Gaps = 39/265 (14%)
Query: 239 VEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLL 298
+ + R A A G++ GD VAL++ N F +LG +N + + +
Sbjct: 17 LAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD---------TDSSSSPVPRS 349
+ + +G I A+L + L + V + S + + +P +
Sbjct: 77 YILEDSGARVLIAHADLLHGLASA---LPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA 133
Query: 350 QALSPLLS-EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK-----------AAVISNHR 397
L+ + P P + + IYTSGTTG PK AA R
Sbjct: 134 IDWEGWLAQQEPYDGPPVPQPQSM------IYTSGTTGHPKGVRRAAPTPEQAAAAEQMR 187
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 457
A+ Y G + R PLYH+A A + +A G +V++ +F
Sbjct: 188 ------ALIY--GLKPGIRALLTGPLYHSAPNAYGL-RAGRLGGVLVLQPRFDPEELLQL 238
Query: 458 VCKYKCTVGQYIGEMCRYLLSTPEK 482
+ +++ T + M LL PE+
Sbjct: 239 IERHRITHMHMVPTMFIRLLKLPEE 263
|
Length = 509 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENT----EW---TAQQVEAYSNRVANFFLAQGLKKGD 259
+I + + A +P++ ++ + +W T + + + +A L GL G
Sbjct: 48 PRSIPHLLAKWAAEAPDRP-WLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGR 106
Query: 260 SVALMLENRPEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY- 311
V ++ N E + L + GV A L++H+ + L H ++ ++
Sbjct: 107 PVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAK--LKHLFDLVK-PRVVFA 163
Query: 312 --GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 369
GA A+ + +V + + + +S A +P + V + +++
Sbjct: 164 QSGAPFARALAALDLL---DVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPD 220
Query: 370 -VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP------LP 422
V Y++TSG+TG+PK AVI+ R + IA Q R ++ P +P
Sbjct: 221 TVAK-----YLFTSGSTGMPK-AVINTQR--MMCANIAMQEQLRPREPDPPPPVSLDWMP 272
Query: 423 LYHTAGGAMCIGQALIFG 440
HT GG L G
Sbjct: 273 WNHTMGGNANFNGLLWGG 290
|
Length = 624 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 54/214 (25%)
Query: 214 FREHAVR--SPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
+ E+ +R ++ +F E + ++ +A A G+ GD VA L
Sbjct: 88 YAENLLRHRRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLP 147
Query: 267 NRPEFVCLWLGLSKLGVI----------------------TALINHNLRQNSLLHCINIA 304
N PE V L + LG I LI
Sbjct: 148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLI---------------- 191
Query: 305 GVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS--SSPVPRSQALSPLLSEV 359
V + YG + V E+ +L S ++ P + ++ +P + L+
Sbjct: 192 AVDGYRYGGKAFDRRAKVAELRAALPS-LEHVVVVPYLGPAAAAAALPGALLWEDFLAPA 250
Query: 360 PTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV 392
+ V L +I Y+SGTTGLPK V
Sbjct: 251 EAAELEFE-PVPFDHPL-WILYSSGTTGLPKCIV 282
|
Length = 655 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 69/314 (21%), Positives = 114/314 (36%), Gaps = 42/314 (13%)
Query: 239 VEAYSNRV---ANFF-----LAQGL-----KKGDSVALMLENRPEFVCLWLGLSKLGVIT 285
V NR F LA GL + GD VA+ N ++ L ++ G I
Sbjct: 25 VTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84
Query: 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS----PDTDS 341
A +N+ + + + + L ++ +L S ++ S
Sbjct: 85 APLNYRWSFEEAKSAMLLVRPVMLV----TDETCSSWYEELQND-RLPSLMWQVFLESPS 139
Query: 342 SSSPVPRSQALSPLLSEVPT-SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 400
SS + + L+ + + L Y D ++ +TSGTTG PK IS H
Sbjct: 140 SSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTIS-HS--- 195
Query: 401 LGGAIAYQ-------IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
A+ Q +G+ D + PL H G + + L+ G C V+ KF A
Sbjct: 196 ---ALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAM-LMVGACHVLLPKFDAKA 251
Query: 454 YFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--HNVRLMF--GNGLRPQIWSEFVDR 509
+ ++ T + M L+S K +VR + G L ++ +
Sbjct: 252 ALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKL 311
Query: 510 FRIAQIGEFYGATE 523
F A++ YG TE
Sbjct: 312 FPNAKLFSAYGMTE 325
|
Length = 563 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 65/278 (23%), Positives = 97/278 (34%), Gaps = 40/278 (14%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMF--------ENTEWTAQQVEAYSNRVANF 249
AAR + + ++ A R P+ F WT ++ A R AN
Sbjct: 18 LAARDLPA---STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANL 74
Query: 250 FLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSA 308
+ G+ GD VA +L N PE LW G + I IN L + + AG
Sbjct: 75 LHSLGVGPGDVVAFLLPNLPETHFALWGG--EAAGIANPINPLLEPEQIAELLRAAGAKV 132
Query: 309 FI-YG-----------AELTDAVQEIST--SLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ G AE+ A+ E+ T + L ++ L
Sbjct: 133 LVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILD- 191
Query: 355 LLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQ 408
+E+ P + +G D Y +T GTTG+PK A H + A
Sbjct: 192 FDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQ---HTHGNEVANAWLGALL 248
Query: 409 IGFRTKDRFYTPLPLYHTAGGAMCIG-QALIFGCCVVI 445
+G D + LPL+H + G L G VV+
Sbjct: 249 LGLGPGDTVFCGLPLFHV-NALLVTGLAPLARGAHVVL 285
|
Length = 632 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 6/149 (4%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLG-GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
IYTSG+TG PK ++S HR G +IA + DR LP G + A
Sbjct: 8 IYTSGSTGEPKGVMLS-HRNLTAGARSIAQYLELTEDDRILAVLPFSFDY-GLSQLLTAF 65
Query: 438 IFGCCVVIRKKFS-ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-- 494
G +V+ +F+ + + K + T + LL + ++R +
Sbjct: 66 RVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNA 125
Query: 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
G L + + F A++ YG TE
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTE 154
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW---LGLSKLGVITA 286
++ Q+ SNRVANF G+++GD V LML N PE LW L KLG +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPE---LWEAMLAAIKLGAVVI 53
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL- 292
T ++ +N +A A G+ GD VA+++ E + LG+ G I+ +
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 293 --RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
R+ ++L AG A + L + +
Sbjct: 73 AERRAAILA---RAGARAVLTDPGLAQPEEAPDLLV------------------------ 105
Query: 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P+ D L Y I+TSG+TG PK +I+ HR
Sbjct: 106 ---VADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT-HR 149
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 251 LAQGLKKGDSVALMLENRPEFV-----CLWLGL--SKLGVITALINHNLRQNSLLHCINI 303
LA GLK GD VAL+ E +FV C + GL L + L +
Sbjct: 67 LALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS 126
Query: 304 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
A +A I EL V E + + + S + P AL +P
Sbjct: 127 AQPAAIITPDELLPWVNEATHGNPL-LHVLSH---AWFKALPEADV-ALPRP------TP 175
Query: 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLP 422
++Y +Q Y+SG+T P+ +I++ AI++ + R DR + LP
Sbjct: 176 DDIAY---LQ------YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLP 226
Query: 423 LYHTAG 428
YH G
Sbjct: 227 FYHDMG 232
|
Length = 579 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 244 NRVANF---FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC 300
RV NF +A G K + VA+ + R E++ G + + I +L + +L H
Sbjct: 114 ERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHS 173
Query: 301 INIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPL--- 355
+N V+ I ++ + +IS+ L + V SS + +S
Sbjct: 174 LNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEV 233
Query: 356 --LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
L + P L + + +YTSG+TGLPK ++++ G +A G T
Sbjct: 234 EKLGKENPVDPDLPSPNDIA---VIMYTSGSTGLPKGVMMTH------GNIVATVAGVMT 284
Query: 414 -------KDRFYTPLPLYH-----------TAGGAMCIGQAL 437
D + LPL H G A+ G L
Sbjct: 285 VVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPL 326
|
Length = 696 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 24/179 (13%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
A P + + ++ E T QQ++ S+R+A F + L K + + P + +
Sbjct: 8 AFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAF 67
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
LG K G ++ ++ + I AG I+ AEL+
Sbjct: 68 LGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELS------------------- 108
Query: 336 SPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
D+ + + AL + P S + V D IYTSG+TG PK IS
Sbjct: 109 ---IDAVGTQIITLSALEQAETS--GGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQIS 162
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 545 KKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 583
+K LPSYA PLF+R EV TG +K +K L+KEG DP
Sbjct: 430 RKRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 72/320 (22%), Positives = 121/320 (37%), Gaps = 18/320 (5%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
PN+ ++ T +T Q R+A ++ + K D V+++ N P + +
Sbjct: 28 PNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87
Query: 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG---SNVKL-FSWSP 337
G + IN L S+ + A +E+ L SN+ L +
Sbjct: 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIH 147
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI---YTSGTTGLPKAAVIS 394
+ D P L+ +P ++ +QD+ I YTSGTT PK VIS
Sbjct: 148 EIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVIS 207
Query: 395 NHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452
+ Y L I +++G T + LP++H G G A G V +R +A
Sbjct: 208 HRGAYLSTLSAIIGWEMG--TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAP 264
Query: 453 NYFSDVCKYKCTVGQYIGEMCRYLL---STPEKPEDKAHNVRLMFGNGLRPQIWSEFVDR 509
+ ++ + T + + LL S P ++ V ++ G P + V R
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP--RSGPVHVLTGGSPPPAALVKKVQR 322
Query: 510 FRIAQIGEFYGATEGMAAIL 529
Q+ YG TE +L
Sbjct: 323 LGF-QVMHAYGLTEATGPVL 341
|
Length = 579 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 67/338 (19%), Positives = 131/338 (38%), Gaps = 25/338 (7%)
Query: 223 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
K F+ + + + ++EA R+ G+K+ + V L++ + +F +LG + G
Sbjct: 20 GKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAG 79
Query: 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS 342
++ +N L + + + + EL ++
Sbjct: 80 IVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVV------VG 133
Query: 343 SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 402
Q L +E P+ + D ++Y+SG+TG+PK V ++ Y+
Sbjct: 134 RPEAGEVQLAELLATESEQFKPAATQ---ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190
Query: 403 GAIAYQ-IGFRTKDRFYTPLPLYHTAGGAMCIGQALIF----GCCVVIR-KKFSASNYFS 456
A +G R D ++ L+ G +G AL F G V+ ++ + F
Sbjct: 191 ELYARNTLGIREDDVVFSAAKLFFAYG----LGNALTFPMSVGATTVLMGERPTPDAVFD 246
Query: 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514
+ +++ T+ + + +L+ P P + +RL G L ++ + RF +
Sbjct: 247 RLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV-D 305
Query: 515 IGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA 552
I + G+TE M I N DV + G K +P Y
Sbjct: 306 IVDGIGSTE-MLHIFLSNLPGDVRYGTSG--KPVPGYR 340
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 230 ENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
+ +W+ +++ + S + AN A GL++GD VA++L PE+ + + + G++
Sbjct: 38 DEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPG 97
Query: 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVP 347
L +L+ + + + EL AV I++ S KL S
Sbjct: 98 TIQLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLV---------SEHS 148
Query: 348 RSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI 405
R L+ LL E S + Q+ + +TSGTTG PK A H + LG
Sbjct: 149 RDGWLNFKELLKE--ASTEHTCVKTKSQEPMAIYFTSGTTGFPKMA---EHSHSSLG--- 200
Query: 406 AYQIGFRTKDRFYTPL 421
+G + R++ L
Sbjct: 201 ---LGLKVNGRYWLDL 213
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 2e-06
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 13/238 (5%)
Query: 229 FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
E T +V + R+ A G+ GD VA + N + + + +G +
Sbjct: 20 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79
Query: 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPR 348
N L + + +N A ++ L V+ V
Sbjct: 80 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA-IRGELKTV--------QHFVVMDEKA 130
Query: 349 SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY- 407
+ + + V + YT+GTTGLPK V S+ A +
Sbjct: 131 PEGYLAYEEALGEEADPVR--VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 188
Query: 408 -QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
KD +P++H + L+ V+ + ++ T
Sbjct: 189 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT 246
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ V +F + T +++ +NR+A++ A+G+ GD VA+ LE PE V L + K
Sbjct: 1 PDAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 282 G 282
G
Sbjct: 61 G 61
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
WT ++ NR+A+ A GL KGD V + + PE V L ++K+G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 17/252 (6%)
Query: 197 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSN 244
L A RR A K D TI D F P+K ++ ++++ +
Sbjct: 5 LLAPRRAASKAAGLWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVD 64
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304
R+A G+ +GD V+ L NR EF L+L +++G + + R+ L +N A
Sbjct: 65 RIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHA 124
Query: 305 GVSAFIYGAELTDAVQE-ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
F+ + ++ L S + D ++P + P +
Sbjct: 125 DSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAA 184
Query: 364 PSLS-YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLP 422
L+ R D IYTSGTTG PK + + + + A ++ D P
Sbjct: 185 AILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP 244
Query: 423 LYHTAG---GAM 431
+ H G G M
Sbjct: 245 MAHQTGFMYGLM 256
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 27/276 (9%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T+ D+ + A + F + T ++EA + A L G K SVAL L N
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNT 81
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---YGAELTDAVQEISTS 325
P+ + G K G ++ + +L H ++ +G I A L A++ +
Sbjct: 82 PDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKG 141
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--------SPPSLSYRVGVQDKLI 377
L + + D + V QA P + T + P+ V D +
Sbjct: 142 LLDRLIVCE-----DDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVAL 196
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQI-GFRTK------DRFYTPLPLYHTAGG 429
YT GTTGLPK A++++ L A++ Y + G ++ +R LPL+H
Sbjct: 197 LQYTGGTTGLPKGAMLTHGN---LTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ + ++L G + + ++F + F D+ + + TV
Sbjct: 254 TVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 39/198 (19%)
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGA 430
D + +TSGTTGLPK + ++ Y LG + AY + R D +T G A
Sbjct: 81 DDPALLYFTSGTTGLPKMVLHTHS--YPLGHLVTGAYWLDLRPDDLHWTI----ADPGWA 134
Query: 431 MCIGQALIF----GCCVVIR--KKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLS 478
+L G V + ++F A + +Y T C R LL
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTT------FCAPPTAYRMLLQ 188
Query: 479 TPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIA---QIGEFYGATEGMAAILDINK 533
D +H +R + G L P E +D +R A I + YG TE ++
Sbjct: 189 QDLSSYDFSH-LRHVVSAGEPLNP----EVIDWWRAATGLPIRDGYGQTE-TGLLVANFP 242
Query: 534 SLDVSAVSEGIKKALPSY 551
++V S G + P Y
Sbjct: 243 GMEVKPGSMG--RPAPGY 258
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++++ S+R+A A G++KGD V LM+ + L L K+G + LI+ + +
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328
L C+ A AFI G D I + GS
Sbjct: 64 KHLGRCLEEAEPDAFI-GIPKADDPAAILFTSGS 96
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 68/319 (21%), Positives = 112/319 (35%), Gaps = 75/319 (23%)
Query: 235 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVI--------- 284
T ++++ +NR+A A G+ GD VA++LE E V L + K G
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 344
+ L AG + + L + + + L D+ +
Sbjct: 61 AERLAFILED---------AGARLLLTDSALASRLAGLVLPVILLDPLELA-ALDDAPAP 110
Query: 345 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR--YYFLG 402
P P + P+ P L+Y IYTSG+TG PK V++ HR L
Sbjct: 111 PPPDA----------PSGPDDLAY---------VIYTSGSTGRPKGVVVT-HRSLVNLLA 150
Query: 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ---ALIFGCCVVI----RKKFSASNYF 455
G DR + + + + AL+ G +V+ ++ A+
Sbjct: 151 WLARR-YGLDPDDRV----LQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLA 205
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTP--------EKPEDKAHNVRLMFGNG--LRPQIWSE 505
+ + ++ TV L TP P A +RL+ G L P +
Sbjct: 206 ALIAEHPVTV----------LNLTPSLLALLAAALPPALAS-LRLVILGGEALTPALVDR 254
Query: 506 FVDRFRIAQIGEFYGATEG 524
+ R A++ YG TE
Sbjct: 255 WRARGPGARLINLYGPTET 273
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 64/337 (18%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLEN 267
T+A++F + ++ + T ++ + + A + L + LKKGD VALM+ N
Sbjct: 26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPN 85
Query: 268 RPEFVCLWLGLSKLGVITA---LINHN--LRQNSLLHCINIAGVSAFIYGAELTDAVQE- 321
CL ++ GV+ A ++N N L H + +G S + VQ+
Sbjct: 86 -----CLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQV 140
Query: 322 ---------ISTSLGS-----NVKLFSWS--------PDTDSSSSPVPRSQALSPLLSEV 359
I+T LG L ++ P+ + + + +AL+ L
Sbjct: 141 IADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGA-IRFREALA--LGRK 197
Query: 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---------YYFLGGAIAYQIG 410
+ P ++ D YT GTTG+ K A+++ HR + +L G + G
Sbjct: 198 HSMPT---LQIEPDDIAFLQYTGGTTGVAKGAMLT-HRNLVANMQQAHQWLAGTGKLEEG 253
Query: 411 FRTKDRFYTPLPLYH----TAGGA--MCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
+ T LPLYH TA G M IG GC +I + ++ K + T
Sbjct: 254 ---CEVVITALPLYHIFALTANGLVFMKIG-----GCNHLISNPRDMPGFVKELKKTRFT 305
Query: 465 VGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ 501
+ + LL+TP + ++++ G G+ Q
Sbjct: 306 AFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQ 342
|
Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 67/353 (18%), Positives = 127/353 (35%), Gaps = 42/353 (11%)
Query: 182 FPALKSRALQRYLRFLWA---ARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQ 238
L+ QR + LW A A + + E A +P+ V +F+ + T +
Sbjct: 4525 LQLLEKAEQQRIV-ALWNRTDAGYPAT--RCVHQLVAERARMTPDAVAVVFDEEKLTYAE 4581
Query: 239 VEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLL 298
+ +NR+A+ +A+G+ V + +E E + L + K G ++ + L
Sbjct: 4582 LNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLA 4641
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358
+ + +G + + + L + + + + D D P A P
Sbjct: 4642 YMMEDSGAALLLTQSHLLQRL-----PIPDGLASLALDRDEDWEGFP-----AHDP---A 4688
Query: 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-----NHRYYFLGGAIAYQIGFRT 413
V P +L+Y IYTSG+TG PK +S NH + Y++
Sbjct: 4689 VRLHPDNLAY---------VIYTSGSTGRPKGVAVSHGSLVNHLHATGE---RYELTPDD 4736
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK--FSASNYFSDVCKYKCTVGQYIGE 471
+ + + G LI G VVIR + ++++ +++ TV +
Sbjct: 4737 RVLQFMSFSFDGSHEGLY---HPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPV 4793
Query: 472 MCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ L E+ + F G + + + + YG TE
Sbjct: 4794 YLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTE 4846
|
Length = 5163 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 30/333 (9%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
+ A R P K F + T R AN+ G++KGD VA+ML N P+ V +
Sbjct: 32 QMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGY 91
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
G G I N + L + ++ +G + D V T++ S K+
Sbjct: 92 YGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL----CLDLVFPRVTNVQSATKIEHV 147
Query: 336 SPDTDSSSSPVPRS-------QALSPLLSEVPTSPP-----SLSYRVGV---------QD 374
+ P P++ + S L+ +V S S+ V D
Sbjct: 148 IVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEND 207
Query: 375 KLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR---FYTPLPLYHTAGGAM 431
+ YT GTTG PK +++ H+ + Q + K+ LP +H G
Sbjct: 208 LALLQYTGGTTGFPKGVMLT-HKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTA 266
Query: 432 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 491
+ +++ G +V+ KF F + K+K T+ + LL++P E ++R
Sbjct: 267 VMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIR 326
Query: 492 -LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ G+ P E + ++ E YG TE
Sbjct: 327 ACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE 359
|
Length = 563 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q+ + +V+ G+K GD VA + N + W G+ +G I +N L
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSP---VPRSQA 351
+ IN A I +++I+ L S V+ + TD++ P + + A
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPS-VERYVVL--TDAAHMPQTTLKNAVA 157
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--- 408
++E ++ + Y TSGTTG PK + S HR L +A
Sbjct: 158 YEEWIAEADGDFAWKTFDENTAAGMCY--TSGTTGDPKGVLYS-HRSNVLHALMANNGDA 214
Query: 409 IGFRTKDRFYTPLPLYH 425
+G D +PL+H
Sbjct: 215 LGTSAADTMLPVVPLFH 231
|
Length = 542 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 45/211 (21%)
Query: 240 EAYSNRVA--NFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK-----------LG--VI 284
EA + R A + + G+ KG V L NRPE++ + S LG +
Sbjct: 83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAV 142
Query: 285 TALINHNLRQ---------NSLLHCIN-IAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334
++NH N+LL C++ I V + + + S G+ V++ +
Sbjct: 143 KFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLP--SLPSGTGVEIVT 200
Query: 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
+S +Q S P P +D YTSGTTG PK V++
Sbjct: 201 YS---------KLLAQGRSSPQPFRPPKP---------EDVATICYTSGTTGTPKGVVLT 242
Query: 395 NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH 425
+ + F D + LPL H
Sbjct: 243 HGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
|
Length = 651 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 107 NKKGLCSRCEPGVFIGKIVPSNPARA---YLGYVNEKDSAKKIFTDVFEIGDSAFLSGDL 163
++ G +RC PG +G++V R GY N+ ++ + G+ +GDL
Sbjct: 186 DEDG--NRCAPGE-VGELV----HRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238
Query: 164 LVMDKWGYLYFKDRTGDTFPALKSR 188
+ MD+ GYLYF R D +K+R
Sbjct: 239 VRMDEEGYLYFVGRKDDM---IKTR 260
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 63/323 (19%), Positives = 112/323 (34%), Gaps = 42/323 (13%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ + A +P V +F E T ++ +NR+A+ +A G+ V + +E E V
Sbjct: 1579 LIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMV 1638
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
L + K G ++ + L + I +G+ + + L + L ++
Sbjct: 1639 VGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL-----PLPDGLRS 1693
Query: 333 FSWSP-----DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ S S+P V +P +L+Y IYTSG+TG
Sbjct: 1694 LVLDQEDDWLEGYSDSNP------------AVNLAPQNLAY---------VIYTSGSTGR 1732
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDR--FYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
PK A + A D +T + LI G +VI
Sbjct: 1733 PKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF---WPLINGARLVI 1789
Query: 446 RKKFSAS---NYFSDV-CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRP 500
A + + + T ++ M + LL E+ E R++ G L
Sbjct: 1790 A-PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEV 1848
Query: 501 QIWSEFVDRFRIAQIGEFYGATE 523
+ +++R + YG TE
Sbjct: 1849 EALRPWLERLPDTGLFNLYGPTE 1871
|
Length = 3956 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 112 CSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGY 171
PG +G++V P GY N T D + +GDL +D+ GY
Sbjct: 187 GKPLPPG-EVGELVVRGPWVM-KGYWNNPPE-----TTAAATEDGWYRTGDLGYLDEEGY 239
Query: 172 LYFKDRTGDTF 182
LY R+ D
Sbjct: 240 LYITGRSKDLI 250
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 74/249 (29%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +Q + A FL GL++ SV ++ N PE+ ++ +G I A
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWF-----IAAVGAIFA------- 56
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV----------------------- 330
G++ IY +A Q ++ + +N+
Sbjct: 57 ----------GGIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLK 106
Query: 331 --------------KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
L+SW + S +P Q + + S+ P +L
Sbjct: 107 AIIQYREPLKEKEPNLYSWKEFMELGRS-IPDEQLDAIIESQKPNQCCTL---------- 155
Query: 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIG 434
IYTSGTTG+PK ++S+ + A + RT ++ + LPL H A + I
Sbjct: 156 --IYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIW 213
Query: 435 QALIFGCCV 443
+ G CV
Sbjct: 214 LPISVGGCV 222
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 35/269 (13%)
Query: 184 ALKSRALQRYLRFLWAARRVAQ-KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
+ +R + W A A + + + R+P +F + + + ++
Sbjct: 3070 PTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRR 3129
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+NR+A+ +A G+ V + +E E + L + K G ++ + L + I
Sbjct: 3130 ANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIE 3189
Query: 303 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+GV + A L + + + + + ++ ++P R
Sbjct: 3190 DSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNGYSE--NNPSTRVM------------ 3235
Query: 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAA-----VISNHRYYFLGGAIAYQIGFRTKDRF 417
+L+Y IYTSG+TG PK ++NH + A AY++ +
Sbjct: 3236 GENLAY---------VIYTSGSTGKPKGVGVRHGALANHLCWI---AEAYELDANDRVLL 3283
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
+ + G LI G C+V+R
Sbjct: 3284 FMS---FSFDGAQERFLWTLICGGCLVVR 3309
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 184 ALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYS 243
A R + Y R +R+A E A R+P + +F + + ++++ +
Sbjct: 1990 ADWDRTPEAYPRGPGVHQRIA-----------EQAARAPEAIAVVFGDQHLSYAELDSRA 2038
Query: 244 NRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINI 303
NR+A+ A+G+ VA+ E E V L + K G ++ N L + +
Sbjct: 2039 NRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLED 2098
Query: 304 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
+G + + L + + L + V D + + P V +
Sbjct: 2099 SGAALLLTQRHLLERL-----PLPAGVARLPLDRDAEWADYPDTA--------PAVQLAG 2145
Query: 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
+L+Y IYTSG+TGLPK +S
Sbjct: 2146 ENLAY---------VIYTSGSTGLPKGVAVS 2167
|
Length = 5163 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 200 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 255
ARR +K DL + DI HA + + + + +++ +++ S+ +A QG+
Sbjct: 13 ARRYREKGYWQDLPLTDILTRHA--ASDAIAVICGERQFSYRELNQASDNLACSLRRQGI 70
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHN 291
K GD+ + L N EF + L KLGV + AL +H
Sbjct: 71 KPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108
|
Length = 536 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313
G+ V M+ N E + + ++ +G + +N L + ++H IN A +
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 314 ELTDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372
L + + EI +F D DS+++ +P + + + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELD 179
Query: 373 QDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
+ I Y++GTTG PK V S HR +L + RT D
Sbjct: 180 ETTAAAICYSTGTTGAPKGVVYS-HRSLYLQS-----LSLRTTDSL-------------- 219
Query: 432 CIGQALIFGCCVVI 445
+ F CCV I
Sbjct: 220 AVTHGESFLCCVPI 233
|
Length = 576 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 45/245 (18%)
Query: 217 HAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
HA P ++ + + WT +++A R+A +G G+ +A++ N V L
Sbjct: 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE----LTDAVQEISTSLGSNV 330
+++G I +N L + L A + AE L D + ++
Sbjct: 64 HFACARVGAIYVPLNWRLSASEL---------DALLQDAEPRLLLGDDAVAAGRTDVEDL 114
Query: 331 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA 390
F S D + P P SL ++TSGT+G PK
Sbjct: 115 AAFIASAD---ALEPADTPSI--------PPERVSL-----------ILFTSGTSGQPKG 152
Query: 391 AVISNHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
++S A+ G + F P++H G + L G +++
Sbjct: 153 VMLSERNLQ----QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVS 208
Query: 447 KKFSA 451
F
Sbjct: 209 NGFEP 213
|
Length = 488 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
+ ++ S RVAN G+K GD VA +L PE V L ++G I
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAI 51
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 24/219 (10%)
Query: 180 DTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 239
D P L + + + A + +F E R+P F ++
Sbjct: 483 DELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAEL 542
Query: 240 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
+NR+A+ + +G+ V + +E E V L + K G ++ L +
Sbjct: 543 NRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAY 602
Query: 300 CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ +GV + + L ++ + G V + L
Sbjct: 603 MLEDSGVQLLLSQSHLGR---KLPLAAGVQVLDLD----------------RPAAWLEGY 643
Query: 360 PTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P + L Y IYTSG+TG PK A HR
Sbjct: 644 SEENPGTEL---NPENLAYVIYTSGSTGKPKGAGNR-HR 678
|
Length = 5163 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ + ++ + +++ SN++A A G+ GD V ++LE + V L + K
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 282 G 282
G
Sbjct: 61 G 61
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 9e-04
Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 39/320 (12%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A R P + + ++ + ++++ + +A G+ G +V +M N FV
Sbjct: 45 AARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA 104
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 337
+ LG I+ R ++L + +S + E + + V + +
Sbjct: 105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDPAT 160
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
S P + P I + TSGTTG PK +
Sbjct: 161 AGAEESGGRPA------------VAAPGR----------IVLLTSGTTGKPKGVPRAPQL 198
Query: 398 YYFLGGAIAY--QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 455
+G + + RT R +P++H G M + + G V+ + F A
Sbjct: 199 RSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM-LTIALGGTVLTHRHFDAEAAL 257
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN------VRLMFGNGLRPQIWSEFVDR 509
+ ++ + + +L P P +A N V + G+ L P + F+D
Sbjct: 258 AQASLHRADAFTAVPVVLARILELP--PRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDT 315
Query: 510 FRIAQIGEFYGATE-GMAAI 528
+ + YG+TE G+ A+
Sbjct: 316 YGDI-LYNGYGSTEVGIGAL 334
|
Length = 516 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 62/238 (26%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
++ Q+++ S R AN + G+ KG+ V +L PE LG KLG +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYG------- 53
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS-WSPDTDSSSSPVPRSQAL 352
LFS + P+ P+ L
Sbjct: 54 -------------------------------------PLFSAFGPE------PIRDRLEL 70
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---YYFLGGAIAYQI 409
++V + P L R +D + +TSGTTG PK V+ HR ++ Y +
Sbjct: 71 GE--AKVLITTPELYERTDPEDPALLHFTSGTTGKPK-GVLHVHRAVVAHYATA--RYVL 125
Query: 410 GFRTKDRFY-TPLPLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTV 465
R D ++ T P + T G + I L+ G +V+ + +F A ++ + + K TV
Sbjct: 126 DLRPDDVYWCTADPGWVT-GTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTV 182
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 51/209 (24%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A V + T++ + + A ++P+ +++ +++ +AN +G+K
Sbjct: 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKP 507
Query: 258 GDSVALMLENRPEFVCLWL------GLSKLGVITALINHNLR------QNSLLHCINIAG 305
GDSVA+ L R F+ L L G + L + T + L+ + SLL
Sbjct: 508 GDSVAVALP-RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLL------- 559
Query: 306 VSAFIYGAELTDAVQEISTSLGSNVKLFSW-SPDTDSSSSPVPRSQALSPLLSEVPTSPP 364
+T A Q + ++ + +P ++P+ SQ P
Sbjct: 560 ---------ITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ------------PH 598
Query: 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393
+Y I+TSG+TG PK ++
Sbjct: 599 HTAY---------IIFTSGSTGRPKGVMV 618
|
Length = 1296 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 115 CEPGVFIGKIVPSNP--ARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
PG +G++ P AR YL + + +A++ D + + +GDL D+ GYL
Sbjct: 323 VPPGE-VGELCIRGPGVARGYLN--DPELTAERFVEDGW----GMYRTGDLGRWDEDGYL 375
Query: 173 YFKDRTGDTF 182
R D
Sbjct: 376 EILGRKDDQV 385
|
Length = 412 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q+ + R+ +GL GD V L L + P+ V L L GV+ L N L +
Sbjct: 32 THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHR 91
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ + + + + + F S +++
Sbjct: 92 DD--------------HALAARNTEPALVVTSDALRDRFQPSRVAEAAE----------- 126
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
L+SE P +G YTSGTTG PKAA+ HR+
Sbjct: 127 LMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAI---HRH 167
|
Length = 705 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 307
L + G++V +ML N + L G + A+IN + ++L A V
Sbjct: 675 LKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVL 734
Query: 308 ---AFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVP 360
AFI A L ++ + +++ + D + + + L PL+
Sbjct: 735 TSRAFIEKARLGPLIEALEFG----IRII-YLEDVRAQIGLADKIKGLLAGRFPLVYFCN 789
Query: 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA-IAYQIGFRTKDRFYT 419
P D + ++TSG+ G PK V+S HR A +A +I F +D+ +
Sbjct: 790 RDP---------DDPAVILFTSGSEGTPKGVVLS-HRNLLANRAQVAARIDFSPEDKVFN 839
Query: 420 PLPLYHTAG 428
LP++H+ G
Sbjct: 840 ALPVFHSFG 848
|
Length = 1140 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 210 IADIFREHAVRSPNKVIFM----FEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDS 260
I DIF ++A + P++ + F + +T +Q+ SN +A++ L G+K+GD
Sbjct: 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDV 297
Query: 261 VALMLENRPEFVCLWLGLSKLGVITALINHNL---RQNSLLHC------INI--AG---- 305
V + + V +G+ K G ++I+ RQ L I I AG
Sbjct: 298 VMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQ 357
Query: 306 -VSAFIYGAELTDAVQEI-STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV---P 360
V +I EL + EI + +L + L S + + P QAL + V P
Sbjct: 358 LVRDYIDK-EL-ELRTEIPALALQDDGSLVGGSLEGGETDVLAP-YQALKDTPTGVVVGP 414
Query: 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH---RYYFLGGAIAYQIGFRTKDRF 417
S P+LS +TSG+ G+PK V+ H YYF +A + G D+F
Sbjct: 415 DSNPTLS------------FTSGSEGIPK-GVLGRHFSLAYYF--PWMAKRFGLSENDKF 459
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 30/182 (16%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
E A P+ + + + T Q++ S+ +A F + L + + PE + +
Sbjct: 10 EFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATF 69
Query: 276 LGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYGAELTDAVQEIS-TSLGSNVKLF 333
LG K G H I + S AE + + E++ SL +
Sbjct: 70 LGAVKAG----------------HAYIPVDVSSP----AERIEMIIEVAKPSL-----II 104
Query: 334 SWSP-DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
+ + PV L + + P + V D I+TSGTTG PK
Sbjct: 105 ATEELPLEILGIPVITLDELKDIFATGN--PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQ 162
Query: 393 IS 394
IS
Sbjct: 163 IS 164
|
Length = 503 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 363 PPSLSYRVGVQD-KLIY----------------IYTSGTTGLPK------AAVISNHRYY 399
P ++ YR+G K++ +YTSGTTGLPK A+ + + Y
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAY- 119
Query: 400 FLGGAIAYQIGFRTKDRFY-TPLP-----LYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
+ Y I R D F+ P LY+ G + +G +F + F+A N
Sbjct: 120 -----MRYAIDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVF-----LEGGFTAEN 169
Query: 454 YFSDVCKYKCTVGQYIGEMCRYLLSTP-EKPEDKAHNVRLMFGNG--LRPQIWSEFVDRF 510
+ + + T R L++ + +R+ G L P++ +
Sbjct: 170 TYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEV-VRWFQAN 228
Query: 511 RIAQIGEFYGATE-GMAAILDINKSLDVSAVSEGIKKALPSYA 552
I + YG TE GM + +V A S G LP Y
Sbjct: 229 LGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMG--LPLPGYR 269
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 61/251 (24%), Positives = 92/251 (36%), Gaps = 50/251 (19%)
Query: 218 AVRSPNKVIFMFENT--EW-------TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
A +P++V EW +QV A +A L GL + ++ N
Sbjct: 5 ARETPDRVFLAERRGGGEWRRVTYAEALRQVRA----IAQALLDLGLSAERPLMILSGNS 60
Query: 269 PEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY---GAELTDA 318
E L L GV A L++ + + L H ++ ++ GA A
Sbjct: 61 IEHALLALAAMYAGVPVAPVSPAYSLLSKDFAK--LRHIFDLL-TPGAVFAEDGAAFARA 117
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY-RVGVQDKLI 377
+ + G V + + +P + A + LL+ PT+ ++ VG
Sbjct: 118 LAAL-GLAG--VPVVA------VRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAK 168
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP--------LPLYHTAGG 429
Y++TSG+TGLPK AVI+ HR L A F T LP HT GG
Sbjct: 169 YLFTSGSTGLPK-AVINTHR--MLCANQAMIAQCW---PFLTEEPPVLVDWLPWNHTFGG 222
Query: 430 AMCIGQALIFG 440
L G
Sbjct: 223 NHNFNMVLYNG 233
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 215 REHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVC 273
H R FE T WT Q + +NR+A+ + G+ G+ V L N P V
Sbjct: 43 HVHNGRGNRPCFRTFEET-WTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVA 101
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
WL + K G I LR L ++ A ++ + LT A
Sbjct: 102 CWLAVLKAGAIVVTTMPLLRAKELTTIVDKARITHALCDKRLTAA 146
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYS------NRVANFFLAQGLKKGDSVALMLENRPE 270
H P+KV ++E E + Y R AN + G+KKGD VA+ + PE
Sbjct: 66 HLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPE 125
Query: 271 FVCLWLGLSKLGVITALI 288
L +++G I +++
Sbjct: 126 AAIAMLACARIGAIHSVV 143
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 222 PNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
NKV ++E + T +++ R AN + G+KKGD VA+ + PE
Sbjct: 61 GNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAM 120
Query: 276 LGLSKLGVI 284
L +++G I
Sbjct: 121 LACARIGAI 129
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| KOG1177|consensus | 596 | 100.0 | ||
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| KOG1176|consensus | 537 | 100.0 | ||
| KOG1179|consensus | 649 | 100.0 | ||
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1256|consensus | 691 | 100.0 | ||
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1180|consensus | 678 | 100.0 | ||
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| KOG1175|consensus | 626 | 100.0 | ||
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.96 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.95 | |
| KOG1178|consensus | 1032 | 99.91 | ||
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.91 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.84 | |
| KOG3628|consensus | 1363 | 99.63 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.57 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.19 | |
| KOG3628|consensus | 1363 | 98.75 | ||
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 98.5 | |
| KOG1179|consensus | 649 | 98.45 | ||
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.14 | |
| KOG1176|consensus | 537 | 98.09 | ||
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 98.08 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 98.04 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 98.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 97.96 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 97.88 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 97.88 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 97.86 | |
| KOG1177|consensus | 596 | 97.85 | ||
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 97.83 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 97.82 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 97.81 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 97.81 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 97.74 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 97.72 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 97.72 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 97.7 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 97.66 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 97.6 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 97.59 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 97.58 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 97.53 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 97.5 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 97.5 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 97.49 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 97.49 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 97.46 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 97.43 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.41 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.35 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 97.35 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 97.25 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 97.23 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 97.22 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 97.18 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 97.16 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 97.15 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 97.12 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 97.1 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 97.05 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 97.05 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 97.04 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 97.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 97.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 96.99 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 96.96 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 96.96 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 96.95 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 96.94 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 96.94 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 96.94 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 96.89 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 96.88 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 96.87 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 96.85 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 96.85 | |
| PLN02654 | 666 | acetate-CoA ligase | 96.83 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 96.81 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 96.81 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 96.8 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 96.8 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 96.79 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 96.78 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 96.77 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 96.77 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 96.77 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 96.73 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 96.71 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 96.71 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 96.7 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 96.69 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 96.69 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 96.67 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 96.67 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 96.65 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 96.62 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 96.62 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 96.58 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 96.56 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 96.48 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 96.46 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 96.4 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 96.32 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 96.32 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 96.29 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 96.17 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 96.16 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 96.13 | |
| PF00668 | 301 | Condensation: Condensation domain; InterPro: IPR00 | 96.03 | |
| KOG1175|consensus | 626 | 95.99 | ||
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 95.99 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 95.99 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 95.98 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 95.9 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 95.66 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 95.59 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 95.55 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 95.42 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.25 | |
| PLN02479 | 567 | acetate-CoA ligase | 95.03 | |
| PRK09274 | 552 | peptide synthase; Provisional | 95.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 94.12 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 93.26 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 93.09 | |
| KOG1178|consensus | 1032 | 90.61 | ||
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 89.28 | |
| TIGR02946 | 446 | acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b | 87.57 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 86.55 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 85.33 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 83.61 |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-74 Score=739.81 Aligned_cols=565 Identities=18% Similarity=0.162 Sum_probs=458.5
Q ss_pred ccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----cc
Q psy8155 24 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LS 98 (617)
Q Consensus 24 ~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~ 98 (617)
+++.+--+.|+++|+|++||+..++ +++||+|+||||+|++++++.||.++|+++++..+++++||++|| .+
T Consensus 1372 lL~r~sg~~dvv~G~pvsgR~~~~~---~~~vG~fvNtlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~i~~~l 1448 (3956)
T PRK12467 1372 LLHRYSGQDDIRVGVPIANRNRAET---EGLIGFFVNTQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQLVEAL 1448 (3956)
T ss_pred HHHHhhCCCCEEEEecccCCCchhh---hcceeeeeeeeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHh
Confidence 3444567889999999999998777 999999999999999999999999999999999999999999999 77
Q ss_pred CCCCccccCcCCcccc-----------CCCCccccc-cCCCCCccccccccccccc-----chhhhhhhhhccchhhhcc
Q psy8155 99 DPPKNTTYNKKGLCSR-----------CEPGVFIGK-IVPSNPARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSG 161 (617)
Q Consensus 99 ~~~r~~~~~~l~~~~~-----------~~~gl~~~~-~~~~~~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~ 161 (617)
++.|+.+++|+||+-. ..+|+.+.. ......++|||++.+.+.+ ..+|.+++|+.++++++..
T Consensus 1449 ~~~r~~~~~pLFq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~ 1528 (3956)
T PRK12467 1449 QPERSLSHSPLFQVMFNHQRDDHQAQAQLPGLSVESLSWESQTAQFDLTLDTYESSEGLQASLTYATDLFEASTIERLAG 1528 (3956)
T ss_pred cccccCCCCCceeEEEEeecccccccccCCCceeEeeecCCcccccceEEEEEecCCeEEEEEEEeCCcCCHHHHHHHHH
Confidence 8999999999999711 114444444 3346789999999998755 3599999999999999999
Q ss_pred cEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHH
Q psy8155 162 DLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEA 241 (617)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~ 241 (617)
+|..++ ..++.+|..++.+++++++.++++++..|+.+....+...+++++|+++++++|+++|++++++.+||+||++
T Consensus 1529 ~~~~lL-~~l~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~ 1607 (3956)
T PRK12467 1529 HWLNLL-QGLVADPERRLGELDLLDEAERRQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQELTYGELNR 1607 (3956)
T ss_pred HHHHHH-HHHhhCccCceeeccccchHHhhhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCcEEeHHHHHH
Confidence 999888 7778899999999999999999999888877766666678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 242 YSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 242 ~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+++++|++|.++|+++|++|+++++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++....+.+..
T Consensus 1608 ~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~ 1687 (3956)
T PRK12467 1608 RANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL 1687 (3956)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765543321
Q ss_pred HHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHH
Q psy8155 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFL 401 (617)
Q Consensus 322 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~ 401 (617)
.....++.++... .......... ......++++|||+|||||||+||||+++|+++.+.
T Consensus 1688 -----~~~~~~~~~~~~~--------------~~~~~~~~~~--~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~ 1746 (3956)
T PRK12467 1688 -----PDGLRSLVLDQED--------------DWLEGYSDSN--PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNR 1746 (3956)
T ss_pred -----ccCCcEEEecccc--------------chhccCCCCC--CCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHH
Confidence 1122344443211 0011111111 112356899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHc
Q psy8155 402 GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLS 478 (617)
Q Consensus 402 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~ 478 (617)
+.+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .|+..+++.|+++++|++.++|++++.|++
T Consensus 1747 ~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~ 1825 (3956)
T PRK12467 1747 LCATQEAYQLSAADVVLQFTSFAFDVS-VWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQ 1825 (3956)
T ss_pred HHHHHHhcCCCcccEEEEecCccHHHH-HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHh
Confidence 999999999999999999999999988 5899999999999999873 689999999999999999999999999987
Q ss_pred CCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC-CCCCCCHHH-HHHHHhhcCCC----
Q psy8155 479 TPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD-INKSLDVSA-VSEGIKKALPS---- 550 (617)
Q Consensus 479 ~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~-~~~~~~~~~-l~~~l~~~Lp~---- 550 (617)
... ....+++||.++ ||+++++++++|.+.++..+++|.|||||+++.+.. .....+... -...+++.++.
T Consensus 1826 ~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~ 1904 (3956)
T PRK12467 1826 MDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTY 1904 (3956)
T ss_pred hcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEE
Confidence 532 223567898776 899999999999999887689999999999755441 100000000 00011222221
Q ss_pred ----CCcCcEEEEeecc----cCCccchhhhHHHhhcCC----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhc
Q psy8155 551 ----YARPLFIRCLREV----EMTGTYKLKKLDLQKEGF----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQ 612 (617)
Q Consensus 551 ----~~~P~~~~~~~~l----P~t~~GK~dr~~L~~~g~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~ 612 (617)
...|......+++ |.-..|++++..++++.| .+|+||| +|++++| |+|+|+||+|||||+
T Consensus 1905 vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGD-l~~~~~d-G~l~~~GR~D~qVki 1982 (3956)
T PRK12467 1905 ILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGD-LARYRAD-GVIEYLGRIDHQVKI 1982 (3956)
T ss_pred EECCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccc-eEEECCC-CCEEEecccCceEEe
Confidence 1111111112222 223457777777766544 2488999 9999998 999999999999999
Q ss_pred CCcCC
Q psy8155 613 GNIRL 617 (617)
Q Consensus 613 ~G~~v 617 (617)
+|+||
T Consensus 1983 ~G~rI 1987 (3956)
T PRK12467 1983 RGFRI 1987 (3956)
T ss_pred CeEEe
Confidence 99997
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-73 Score=730.31 Aligned_cols=562 Identities=14% Similarity=0.134 Sum_probs=449.9
Q ss_pred ccccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----
Q psy8155 22 PTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF----- 96 (617)
Q Consensus 22 ~~~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf----- 96 (617)
..+++.+-.+.||++|+||+||... .++.+++||+|+||||+|++++++.||.++|+++|+..+++++||++||
T Consensus 2892 a~~L~~~tg~~dv~fG~~vsGR~~~-~~~~e~~vG~fintlp~r~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~i~~ 2970 (3956)
T PRK12467 2892 LLLLQRFTGQDTVCFGATVAGRPAQ-LRGAEQQLGLFINTLPVIASPRAEQTVSDWLQQVQAQNLALREFEHTPLADIQR 2970 (3956)
T ss_pred HHHHHHhcCCCCEEEEeeeCCCCCC-ccChhhheeeeeeceeEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3344455677899999999999743 2334999999999999999999999999999999999999999999999
Q ss_pred c----cCCCCccccCcCCcc------ccCCCCccccccCCCCCccccccccccccc----chhhhhhhhhccchhhhccc
Q psy8155 97 L----SDPPKNTTYNKKGLC------SRCEPGVFIGKIVPSNPARAYLGYVNEKDS----AKKIFTDVFEIGDSAFLSGD 162 (617)
Q Consensus 97 ~----~~~~r~~~~~~l~~~------~~~~~gl~~~~~~~~~~~~~dl~~~~~~~~----~~~~~~~~f~~~~~~~~~~~ 162 (617)
. .+|.|++++...+.. .....++.+........++|||++.+.+.+ ..+|.+++|+.++++++..+
T Consensus 2971 ~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 3050 (3956)
T PRK12467 2971 WAGQGGEALFDSILVFENYPISEALKQGAPSGLRFGAVSSREQTNYPLTLAVGLGDTLELEFSYDRQHFDAAAIERLAES 3050 (3956)
T ss_pred hhccCCCCCcceEEEeecCCchhhhhccCCCCceeecccccccccCceEEEeccCcceeEEEEechhhCCHHHHHHHHHH
Confidence 2 234444444433221 011244555444456779999999987644 34899999999999999999
Q ss_pred EEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHH
Q psy8155 163 LLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242 (617)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~ 242 (617)
|..++ ..++.+|..++.+++++.++++.+++..|+++....+...+++++|+++++++|+++|++++++++||+||+++
T Consensus 3051 ~~~~l-~~~~~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~ 3129 (3956)
T PRK12467 3051 FDRLL-QAMLNNPAARLGELPTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRR 3129 (3956)
T ss_pred HHHHH-HHHHhCcCCchhhccCCCHHHHHHHHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCcccCHHHHHHH
Confidence 99888 77888999999999999999999988888876666666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHH
Q psy8155 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322 (617)
Q Consensus 243 a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~ 322 (617)
++++|+.|.+.|+++|++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++....+.+...
T Consensus 3130 a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~ 3209 (3956)
T PRK12467 3130 ANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP 3209 (3956)
T ss_pred HHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765443211
Q ss_pred HHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH
Q psy8155 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 402 (617)
Q Consensus 323 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~ 402 (617)
.....+.++.... ...... .......++++|||+|||||||+||||+++|+++.+.+
T Consensus 3210 -----~~~~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~ 3266 (3956)
T PRK12467 3210 -----AGDTALTLDRLDL----------------NGYSEN--NPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHL 3266 (3956)
T ss_pred -----cCCceeeecchhh----------------cccCCC--CCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHH
Confidence 1123333332110 001111 11134578999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC--CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCC
Q psy8155 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK--FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP 480 (617)
Q Consensus 403 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~--~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~ 480 (617)
.+....++++++|++++++|++|+.+ +++++.+|..|+++++++. +++..+++.|++++||++.++|++++.|++..
T Consensus 3267 ~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~ 3345 (3956)
T PRK12467 3267 CWIAEAYELDANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA 3345 (3956)
T ss_pred HHHHHhcCCCcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc
Confidence 99999999999999999999999887 6899999999999999885 79999999999999999999999999998754
Q ss_pred CCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCH--HHHHHHHhhcCCCCCcCcE
Q psy8155 481 EKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDV--SAVSEGIKKALPSYARPLF 556 (617)
Q Consensus 481 ~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~--~~l~~~l~~~Lp~~~~P~~ 556 (617)
. ...+++||.++ ||+++++++++|.+.++..+++|.|||||+++.+.......+. ..-...++..+|. ..
T Consensus 3346 ~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~----~~ 3419 (3956)
T PRK12467 3346 G--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAG----RS 3419 (3956)
T ss_pred c--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCC----CE
Confidence 3 33577898876 8999999999999988777899999999997655411000000 0000011222222 12
Q ss_pred EEEeec------------c----cCCccchhhhHHHhhcCC----------CCCccCCeeEEEeCCCceeeCCHHHHHHH
Q psy8155 557 IRCLRE------------V----EMTGTYKLKKLDLQKEGF----------DPNVIQDRLYYLSSKGVYEELTPEVYKDL 610 (617)
Q Consensus 557 ~~~~~~------------l----P~t~~GK~dr~~L~~~g~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I 610 (617)
+.++++ + |....|+.++..++++.| .||+||| +|++++| |+|+|+||+||||
T Consensus 3420 ~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGD-l~~~~~d-G~l~~~GR~d~~i 3497 (3956)
T PRK12467 3420 IYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGD-LARYRAD-GVIEYLGRIDHQV 3497 (3956)
T ss_pred EEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccch-hheecCC-CcEEEeccccceE
Confidence 333332 1 223356777776665544 2489999 9999998 9999999999999
Q ss_pred hcCCcCC
Q psy8155 611 VQGNIRL 617 (617)
Q Consensus 611 ~~~G~~v 617 (617)
|++|+||
T Consensus 3498 ki~G~rI 3504 (3956)
T PRK12467 3498 KIRGFRI 3504 (3956)
T ss_pred eeceEee
Confidence 9999997
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=720.35 Aligned_cols=556 Identities=15% Similarity=0.142 Sum_probs=454.6
Q ss_pred ccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----cc
Q psy8155 24 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LS 98 (617)
Q Consensus 24 ~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~ 98 (617)
++..+--+.|+++|+|++||...+. +++||+|+||+|+|++++++.||.++++++++.++++++||++|| .+
T Consensus 307 lL~~~tg~~dv~ig~pvs~R~~~~~---~~~vG~f~n~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~iv~~l 383 (5163)
T PRK12316 307 LLHRYSGQTDIRVGVPIANRNRAEV---EGLIGFFVNTQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFERLVEAL 383 (5163)
T ss_pred HHHHhcCCCCeEEEeeeCCCCchhh---hcceeeeeeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHh
Confidence 3444567789999999999998777 999999999999999999999999999999999999999999999 78
Q ss_pred CCCCccccCcCCccccC-------------CCCccccc-cCCCCCccccccccccccc-----chhhhhhhhhccchhhh
Q psy8155 99 DPPKNTTYNKKGLCSRC-------------EPGVFIGK-IVPSNPARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFL 159 (617)
Q Consensus 99 ~~~r~~~~~~l~~~~~~-------------~~gl~~~~-~~~~~~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~ 159 (617)
++.|+..++|+||+... ..|+.+.. ......++|||++.+.+.+ ..+|.+++|+.++++.+
T Consensus 384 ~~~r~~~~~plf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~~lf~~~~i~~l 463 (5163)
T PRK12316 384 KVERSLSHSPLFQVMYNHQPLVADIEALDTVAGLEFGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYATDLFEARTVERM 463 (5163)
T ss_pred CCCCCCCCCCcEEEEEEeecccccccccccCCCceEEeeccCCCccceeEEEEEEEcCCcEEEEEEEchhhCCHHHHHHH
Confidence 89999999999987221 13344333 3346788999999987755 35999999999999999
Q ss_pred cccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHH
Q psy8155 160 SGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 239 (617)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL 239 (617)
.++|.+++ ..++.+|+.++.+++++++.++.++...|+......+...+++++|+++++++|+++|++++++++||+||
T Consensus 464 ~~~~~~lL-~~i~~~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~~~TY~eL 542 (5163)
T PRK12316 464 ARHWQNLL-RGMVENPQARVDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAEL 542 (5163)
T ss_pred HHHHHHHH-HHHHhccccccccCCCCCHHHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCceEcHHHH
Confidence 99999888 67788999999999999999998888777766555555689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 240 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 240 ~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|++....+.+
T Consensus 543 ~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~ 622 (5163)
T PRK12316 543 NRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL 622 (5163)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654432
Q ss_pred HHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHH
Q psy8155 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY 399 (617)
Q Consensus 320 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~ 399 (617)
.. .....++.++.... ........ .......++++|||+|||||||+||||+++|+++.
T Consensus 623 ~~-----~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~ 681 (5163)
T PRK12316 623 PL-----AAGVQVLDLDRPAA--------------WLEGYSEE--NPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALS 681 (5163)
T ss_pred Cc-----ccCceEEEecCcch--------------hhccCCCC--CCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHH
Confidence 11 11234444432110 01111111 11123468899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC---CCCHHHHHHHHHHcCCcEEeecHHHHHHH
Q psy8155 400 FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK---KFSASNYFSDVCKYKCTVGQYIGEMCRYL 476 (617)
Q Consensus 400 ~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~---~~d~~~l~~~i~~~~vt~~~~~P~~~~~l 476 (617)
+.+.+....++++++|++++.+|++|+.+ +++++.+|+.|+++++.+ .+++..+++.|++++||++.++|++++.|
T Consensus 682 ~~~~~~~~~~~~~~~d~~l~~~p~~fd~~-~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l 760 (5163)
T PRK12316 682 NRLCWMQQAYGLGVGDTVLQKTPFSFDVS-VWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAF 760 (5163)
T ss_pred HHHHHHHHhcCCCCCCEEEeeCCeehHHH-HHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHH
Confidence 99999999999999999999999999999 588999999999999985 47999999999999999999999999999
Q ss_pred HcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CC-CCCCCHHHHHHHHhhcCCCC
Q psy8155 477 LSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DI-NKSLDVSAVSEGIKKALPSY 551 (617)
Q Consensus 477 ~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~-~~~~~~~~l~~~l~~~Lp~~ 551 (617)
++... ...++++|.++ ||+++++++++|.+.++..+++|.|||||+.+.+. .. ....... .++..+|..
T Consensus 761 ~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~----~iG~p~~~~ 834 (5163)
T PRK12316 761 LQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSV----PIGRPIANL 834 (5163)
T ss_pred Hhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCC----CCccccCCC
Confidence 87543 23567888776 89999999999999887778999999999964332 11 0000000 011112211
Q ss_pred CcCcEEEEee------------cc----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHH
Q psy8155 552 ARPLFIRCLR------------EV----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEV 606 (617)
Q Consensus 552 ~~P~~~~~~~------------~l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~ 606 (617)
.+.+++ ++ |....|++++..++++.| .||+||| +|++|+| |+|+|+||+
T Consensus 835 ----~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGD-l~~~~~d-G~l~~~GR~ 908 (5163)
T PRK12316 835 ----ACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGD-LARYRAD-GVIEYAGRI 908 (5163)
T ss_pred ----EEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCc-cEEECCC-CCEEeeccc
Confidence 122222 21 333467777766655433 2488999 9999998 999999999
Q ss_pred HHHHhcCCcCC
Q psy8155 607 YKDLVQGNIRL 617 (617)
Q Consensus 607 ~d~I~~~G~~v 617 (617)
|||||++|+||
T Consensus 909 d~~ik~~G~rI 919 (5163)
T PRK12316 909 DHQVKLRGLRI 919 (5163)
T ss_pred CCEEEEceEEc
Confidence 99999999997
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-70 Score=661.48 Aligned_cols=551 Identities=14% Similarity=0.084 Sum_probs=424.6
Q ss_pred eEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccC---
Q psy8155 28 SIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSD--- 99 (617)
Q Consensus 28 ~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~--- 99 (617)
+-.+.|+++|+|++||...+. +++||+||||||+|++++++.||.++++++++.+.++++||++|| .++
T Consensus 266 ~sg~~dv~ig~p~sgR~~~~~---~~~vG~fvntlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~i~~~l~~~~ 342 (1296)
T PRK10252 266 LCGRMDYAAGFIFMRRLGSAA---LTATGPVLNVLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRDSGRAA 342 (1296)
T ss_pred HhCCCceEEEEEecCCCchhh---hcCCCcccceEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCcc
Confidence 356779999999999998776 999999999999999999999999999999999999999999999 222
Q ss_pred ---CCCccccCcCCcc-ccCCCCccccccCCCCCcccccccccccc--c----chhhhhhhhhccchhhhcccEEEEecc
Q psy8155 100 ---PPKNTTYNKKGLC-SRCEPGVFIGKIVPSNPARAYLGYVNEKD--S----AKKIFTDVFEIGDSAFLSGDLLVMDKW 169 (617)
Q Consensus 100 ---~~r~~~~~~l~~~-~~~~~gl~~~~~~~~~~~~~dl~~~~~~~--~----~~~~~~~~f~~~~~~~~~~~~~~~~~~ 169 (617)
|.++++++...-. ....+++............+||++.+.+. + ..+|++++|+.++++.+..+|..++ .
T Consensus 343 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~l~~~~~~~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll-~ 421 (1296)
T PRK10252 343 GDEPLFGPVLNIKVFDYQLDFPGVQAQTHTLATGPVNDLELALFPDEHGGLSIEILANPQRYDEATLIAHAERLKALI-A 421 (1296)
T ss_pred CCCCceeEEEEeeecccccCcCCccceeeecCCCccCCeEEEEEECCCCcEEEEEEEChhhCCHHHHHHHHHHHHHHH-H
Confidence 2233332221111 11113333222112223456888887632 2 3589999999999999999999888 6
Q ss_pred ccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHH
Q psy8155 170 GYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 249 (617)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~ 249 (617)
.++.+|..++.+++++++.+... +..++...... +..++.++|+++++++|+++|+++.++.+||+||+++++++|+.
T Consensus 422 ~~~~~p~~~i~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~la~~ 499 (1296)
T PRK10252 422 QFAADPALLCGDVDILLPGEYAQ-LAQVNATAVEI-PETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANL 499 (1296)
T ss_pred HHHhCCCCChhhcCCCCHHHHHH-HHHhcCCCCCC-CcCCHHHHHHHHHHhCCCCeEEEcCCCcEeHHHHHHHHHHHHHH
Confidence 77888999999999999999877 44444433332 34789999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCC
Q psy8155 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329 (617)
Q Consensus 250 L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~ 329 (617)
|.+.|+++|++|+++++|+.++++++|||+++|++|+|+||++|.+++.+++++++++++|++.+....+... ..
T Consensus 500 L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~ 574 (1296)
T PRK10252 500 LRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PD 574 (1296)
T ss_pred HHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CC
Confidence 9999999999999999999999999999999999999999999999999999999999999998765543221 11
Q ss_pred eEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh
Q psy8155 330 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 409 (617)
Q Consensus 330 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~ 409 (617)
......+.. ....... + .....++++|||+|||||||+||||+++|+++.+.+.+....+
T Consensus 575 ~~~~~~~~~-----------------~~~~~~~-~--~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~ 634 (1296)
T PRK10252 575 LTSLCYNAP-----------------LAPQGAA-P--LQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY 634 (1296)
T ss_pred ceeeecccc-----------------cccccCC-C--CCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc
Confidence 122221110 0000000 1 1123678999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC---CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC--
Q psy8155 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK---KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-- 484 (617)
Q Consensus 410 ~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~---~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-- 484 (617)
+++++|++++.+|++|+.+ +++++.+|+.|+++++.+ ..++..+++.|+++++|++.++|++++.+++......
T Consensus 635 ~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~ 713 (1296)
T PRK10252 635 PLTADDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR 713 (1296)
T ss_pred CCCCCCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc
Confidence 9999999999999999988 589999999999999986 3689999999999999999999999999887643222
Q ss_pred CccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC-CCCCCC--H-HHHHHHHhhcCCCCCcCcEEE
Q psy8155 485 DKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD-INKSLD--V-SAVSEGIKKALPSYARPLFIR 558 (617)
Q Consensus 485 ~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~-~~~~~~--~-~~l~~~l~~~Lp~~~~P~~~~ 558 (617)
..++++|.++ ||++++++.++|.+.++. +++|.|||||++..+.. +....+ . ..-...++..++. ..+.
T Consensus 714 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~-~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~----~~~~ 788 (1296)
T PRK10252 714 QSCASLRQVFCSGEALPADLCREWQQLTGA-PLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWN----TGLR 788 (1296)
T ss_pred ccCCCccEEEEecCCCCHHHHHHHHhcCCC-EEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCC----CEEE
Confidence 2457888776 899999999999988775 79999999999654431 100000 0 0000001111111 1122
Q ss_pred Eee------------cc----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcC
Q psy8155 559 CLR------------EV----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQG 613 (617)
Q Consensus 559 ~~~------------~l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~ 613 (617)
+++ ++ |....|++++..++++.| .||+||| +|++++| |+++|+||.||+||++
T Consensus 789 i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGD-l~~~~~~-G~l~~~GR~d~~ik~~ 866 (1296)
T PRK10252 789 ILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGD-VARWLDD-GAVEYLGRSDDQLKIR 866 (1296)
T ss_pred EECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCc-eEEEcCC-CcEEEecccCCeEEEe
Confidence 222 11 222356676666554433 1488999 9999998 9999999999999999
Q ss_pred CcCC
Q psy8155 614 NIRL 617 (617)
Q Consensus 614 G~~v 617 (617)
|+||
T Consensus 867 G~ri 870 (1296)
T PRK10252 867 GQRI 870 (1296)
T ss_pred eEEe
Confidence 9986
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=710.46 Aligned_cols=566 Identities=19% Similarity=0.183 Sum_probs=450.2
Q ss_pred ccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----cc
Q psy8155 24 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LS 98 (617)
Q Consensus 24 ~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~ 98 (617)
+++.+-.+.|+++|+|++||..++. +++||+|+||||+|++++++.||.++++++++..+++++||++|| .+
T Consensus 1986 lL~r~sg~~dvv~G~~vsgR~~~~~---~~~vG~fvntlPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~iv~~l 2062 (4334)
T PRK05691 1986 LLYRYSGQRDLRIGAPVANRIRPES---EGLIGAFLNTQVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDHLVEAL 2062 (4334)
T ss_pred HHHHhcCCCCeEEEecccCCCchhh---hcceeeeeeeeeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHh
Confidence 3444567889999999999998776 999999999999999999999999999999999999999999999 68
Q ss_pred CCCCccccCcCCccccC-----------CCCccccc-cCCCCCccccccccccccc-----chhhhhhhhhccchhhhcc
Q psy8155 99 DPPKNTTYNKKGLCSRC-----------EPGVFIGK-IVPSNPARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSG 161 (617)
Q Consensus 99 ~~~r~~~~~~l~~~~~~-----------~~gl~~~~-~~~~~~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~ 161 (617)
+++|+..++|+||+... ..|+.+.. ......++|||++.+.+.+ ..+|.+++|+.++++++..
T Consensus 2063 ~~~r~~~~~plf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~ 2142 (4334)
T PRK05691 2063 QPPRSAAYNPLFQVMCNVQRWEFQQSRQLAGMTVEYLVNDARATKFDLNLEVTDLDGRLGCCLTYSRDLFDEPRIARMAE 2142 (4334)
T ss_pred ccccccCCCCceEEEEEeeccccccccCCCCceeEeecccCCccccceEEEEEecCCcEEEEEEECcccCCHHHHHHHHH
Confidence 89999999999987211 12333332 2345678999999987754 3589999999999999999
Q ss_pred cEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHH
Q psy8155 162 DLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEA 241 (617)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~ 241 (617)
+|..++ ..++.++..++.+++++++.+++.+...++......+...+++++|+++++++|+++|++++++++||+||++
T Consensus 2143 ~~~~~l-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~ 2221 (4334)
T PRK05691 2143 HWQNLL-EALLGDPQQRLAELPLLAAAEQQQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQTLSYAELDA 2221 (4334)
T ss_pred HHHHHH-HHHHhhhcCChhhccCCcHHHHHHHHHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCeEEcHHHHHH
Confidence 999887 6778889999999999999999988887766555556678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 242 YSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 242 ~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+++++|++|++.|+++|++|+++++||.++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.+..+.+..
T Consensus 2222 ~~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~ 2301 (4334)
T PRK05691 2222 RANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE 2301 (4334)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876554432
Q ss_pred HHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHH
Q psy8155 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFL 401 (617)
Q Consensus 322 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~ 401 (617)
. ......+.++.... ......... ......++++|||+|||||||+||||+++|+++.+.
T Consensus 2302 ~----~~~~~~~~~~~~~~--------------~~~~~~~~~--~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~ 2361 (4334)
T PRK05691 2302 L----PAGVARWCLEDDAA--------------ALAAYSDAP--LPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMH 2361 (4334)
T ss_pred c----cccceeEEeccchh--------------hhhcCCCCC--CCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHH
Confidence 1 11122222221100 000011111 112235789999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcC
Q psy8155 402 GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLST 479 (617)
Q Consensus 402 ~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~ 479 (617)
+.+....++++++|+++++.|++|+.+ ++++|.+|+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.
T Consensus 2362 ~~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~ 2440 (4334)
T PRK05691 2362 CQAVIERFGMRADDCELHFYSINFDAA-SERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQW 2440 (4334)
T ss_pred HHHHHHhcCCCcccEEEEecCccHHHH-HHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHh
Confidence 999999999999999999999999988 589999999999999976 36899999999999999999999999999876
Q ss_pred CCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CCCCCCCHHHHHHHHhhcCC------
Q psy8155 480 PEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLDVSAVSEGIKKALP------ 549 (617)
Q Consensus 480 ~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp------ 549 (617)
.... ....++|.++ ||++++++.++|.+.++..+++|.|||||+.+... ..........-.--++..++
T Consensus 2441 ~~~~-~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i 2519 (4334)
T PRK05691 2441 LAGQ-GEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYI 2519 (4334)
T ss_pred hhcc-ccCCCceEEEEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEE
Confidence 4322 2456788776 89999999999999987668999999999964332 11000000000000111111
Q ss_pred --CCCcCcEEEEeecc----cCCccchhhhHHHhhcCC----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcC
Q psy8155 550 --SYARPLFIRCLREV----EMTGTYKLKKLDLQKEGF----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQG 613 (617)
Q Consensus 550 --~~~~P~~~~~~~~l----P~t~~GK~dr~~L~~~g~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~ 613 (617)
+.+.|......+++ |.-..|+.++..++++.| .||+||| +|++++| |+++|+||+|||||++
T Consensus 2520 ~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~~r~y~TGD-l~~~~~d-G~l~~~GR~d~qvki~ 2597 (4334)
T PRK05691 2520 LDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGD-LVRLRAD-GLVEYVGRIDHQVKIR 2597 (4334)
T ss_pred ECCCCCCCCCCCceEEEecccccCccccCChhhhhhhccCCCCCCCCCceEeccc-eEEEcCC-CCEEEeecccCeEEee
Confidence 11111111111222 233467777666655433 1488999 9999998 9999999999999999
Q ss_pred CcCC
Q psy8155 614 NIRL 617 (617)
Q Consensus 614 G~~v 617 (617)
|+||
T Consensus 2598 G~rI 2601 (4334)
T PRK05691 2598 GFRI 2601 (4334)
T ss_pred eEEe
Confidence 9997
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-70 Score=709.43 Aligned_cols=567 Identities=14% Similarity=0.118 Sum_probs=442.6
Q ss_pred cccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCcccc---ccccccccchhhhhhhhhhcCCccc---
Q psy8155 23 TIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAY---LGYVNEKDSAKKIVTDVFEIGDSAF--- 96 (617)
Q Consensus 23 ~~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~---~~f~~ll~~v~~~~~~a~~hqd~Pf--- 96 (617)
++++.|-.+.|+++|++++||+. .+++.|++||+|+||||+|++++++ .++.++|+++++..+++++||++||
T Consensus 3515 lvL~~ytg~~dVvfG~~~sGR~~-~~~gie~~vG~fiNtlp~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~i 3593 (4334)
T PRK05691 3515 LVLRRYSGDRDVLFGVTVAGRPV-SMPQMQRTVGLFINSIALRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVAI 3593 (4334)
T ss_pred HHHHHhcCCCceEEEeccCCCCC-CcccHHhHhcccccccceEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 33444556779999999999974 3344499999999999999999875 6999999999999999999999999
Q ss_pred --c-----cCCCCccccCcCCccccC--C---CCccccccCCCCCccccccccccccc----chhhhhhhhhccchhhhc
Q psy8155 97 --L-----SDPPKNTTYNKKGLCSRC--E---PGVFIGKIVPSNPARAYLGYVNEKDS----AKKIFTDVFEIGDSAFLS 160 (617)
Q Consensus 97 --~-----~~~~r~~~~~~l~~~~~~--~---~gl~~~~~~~~~~~~~dl~~~~~~~~----~~~~~~~~f~~~~~~~~~ 160 (617)
. ..+.|+++++..+..... . .++..........++|||++.+...+ ..+|.+++|+.++++++.
T Consensus 3594 ~~~~~~~~~~~LF~t~~v~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~y~~~~~~~~~~~~l~ 3673 (4334)
T PRK05691 3594 QECSELPKGQPLFDSLFVFENAPVEVSVLDRAQSLNASSDSGRTHTNFPLTAVCYPGDDLGLHLSYDQRYFDAPTVERLL 3673 (4334)
T ss_pred HHHhcCCCCCCCccEEEEeecCCcchhhhcccccccccccccccccCCCeEEEEecCCceEEEEEEchhhCCHHHHHHHH
Confidence 1 123444444433221000 0 11222222234678999999876544 348999999999999999
Q ss_pred ccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHH
Q psy8155 161 GDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVE 240 (617)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~ 240 (617)
.+|..++ ..++.++..++.+++++++++++.++..|+.+....+...+++++|+++++++|+++|+++.+.++||+||+
T Consensus 3674 ~~f~~~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~~~tY~eL~ 3752 (4334)
T PRK05691 3674 GEFKRLL-LALVQGFHGDLSELPLLGEQERDFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQQWSYAELN 3752 (4334)
T ss_pred HHHHHHH-HHHHhCcCCChhhcCCCCHHHHHHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCCcccHHHHH
Confidence 9999887 777888999999999999999998888877766666677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 241 AYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 241 ~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
++++++|+.|.+.|+++|++|+|++++|.++++++|||+|+|++||||||++|.+|+.+|+++++++++|++....+...
T Consensus 3753 ~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~ 3832 (4334)
T PRK05691 3753 RAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQAR 3832 (4334)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987765544
Q ss_pred HHHHhcCC--CeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHH
Q psy8155 321 EISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398 (617)
Q Consensus 321 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l 398 (617)
.+...+.. ...++..++... ...+.. .......|+++|||+|||||||+||||+++|+++
T Consensus 3833 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~ 3894 (4334)
T PRK05691 3833 ALLDELGCANRPRLLVWEEVQA----------------GEVASH--NPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGM 3894 (4334)
T ss_pred hhhcccccccccceeeeccccc----------------cccccc--CCCCCCCCCceEEEEECCCCCCCCCEEEeehHHH
Confidence 44332221 111222221100 000011 1112357899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHH
Q psy8155 399 YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRY 475 (617)
Q Consensus 399 ~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~ 475 (617)
++.+.+....++++++|++++.+|++|+.+ ++++|.+|+.|+++++++. .|+..+++.+++++||++.++|++++.
T Consensus 3895 ~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~ 3973 (4334)
T PRK05691 3895 LNNQLSKVPYLALSEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQG 3973 (4334)
T ss_pred HHHHHHHHHhcCCCccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHH
Confidence 999999999999999999999999999988 6999999999999999874 689999999999999999999999999
Q ss_pred HHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--C-CCCCCCHHHHHHHHhhcCCC
Q psy8155 476 LLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--D-INKSLDVSAVSEGIKKALPS 550 (617)
Q Consensus 476 l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~-~~~~~~~~~l~~~l~~~Lp~ 550 (617)
++... ...+++||.++ ||+++++++++|.+.++..+++|.|||||+...+. . ......... ..++..++.
T Consensus 3974 l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~--~~iG~p~~~ 4048 (4334)
T PRK05691 3974 MLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSY--LPIGSPTDN 4048 (4334)
T ss_pred HHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCc--CCCCCccCC
Confidence 88543 23467888876 99999999999999988779999999999965443 1 111000000 001111111
Q ss_pred --------CCcCcEEEEeecc----cCCccchhhhHHHhhcCC----------CCCccCCeeEEEeCCCceeeCCHHHHH
Q psy8155 551 --------YARPLFIRCLREV----EMTGTYKLKKLDLQKEGF----------DPNVIQDRLYYLSSKGVYEELTPEVYK 608 (617)
Q Consensus 551 --------~~~P~~~~~~~~l----P~t~~GK~dr~~L~~~g~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d 608 (617)
...|..+-.++++ |.-..|++++..++++.| .+|+||| ++++++| |+++|+||+|+
T Consensus 4049 ~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGD-l~~~~~d-G~l~~~GR~d~ 4126 (4334)
T PRK05691 4049 NRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGD-LARRRSD-GVLEYVGRIDH 4126 (4334)
T ss_pred CEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCc-ceeecCC-CcEEEecccCC
Confidence 1111111111222 333467777776665444 3488999 9999997 99999999999
Q ss_pred HHhcCCcCC
Q psy8155 609 DLVQGNIRL 617 (617)
Q Consensus 609 ~I~~~G~~v 617 (617)
|||++|+||
T Consensus 4127 qvki~G~ri 4135 (4334)
T PRK05691 4127 QVKIRGYRI 4135 (4334)
T ss_pred cEEeceEEe
Confidence 999999997
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=710.21 Aligned_cols=550 Identities=16% Similarity=0.163 Sum_probs=449.3
Q ss_pred ceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccCC
Q psy8155 26 PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSDP 100 (617)
Q Consensus 26 ~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~~ 100 (617)
+.+--+.|+++|+|++||...+. +++||+|+||+|+|++++++.+|.++|+++++..+++++||++|| .+++
T Consensus 2858 ~r~tg~~dv~iG~pvsgR~~~~~---~~~iG~fvntlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~iv~~l~~ 2934 (5163)
T PRK12316 2858 HRYSGQSDIRVGVPIANRNRAET---ERLIGFFVNTQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQLVEALQP 2934 (5163)
T ss_pred HHhcCCCceEEEeeecCCCchhH---HhhhhheecceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcc
Confidence 33456779999999999988777 999999999999999999999999999999999999999999999 5888
Q ss_pred CCccccCcCCccccC----------CCCccccc-cCCCCCccccccccccccc-----chhhhhhhhhccchhhhcccEE
Q psy8155 101 PKNTTYNKKGLCSRC----------EPGVFIGK-IVPSNPARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSGDLL 164 (617)
Q Consensus 101 ~r~~~~~~l~~~~~~----------~~gl~~~~-~~~~~~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~ 164 (617)
.|+..++|+||+-.. .+|+.+.. ......++|||++.+.+.+ ..+|.+++|+.++++++..+|.
T Consensus 2935 ~r~~~~~plf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~~~~~~~~i~~l~~~f~ 3014 (5163)
T PRK12316 2935 ERSLSHSPLFQVMYNHQSGERAAAQLPGLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQ 3014 (5163)
T ss_pred ccccCCCCceeEEEeeeccccccccCCCceeEeeeccCCccceeeEEEEEecCCcEEEEEEECcCCCCHHHHHHHHHHHH
Confidence 999999999987211 13444433 2345678999999998755 3589999999999999999999
Q ss_pred EEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHH
Q psy8155 165 VMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSN 244 (617)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~ 244 (617)
.++ ..++..|+.++.++++++++++..++..|+......+...+++++|+++|+++|+++|+.++++.+||+||+++++
T Consensus 3015 ~lL-~~l~~~p~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~~~ 3093 (5163)
T PRK12316 3015 NLL-RGMVENPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQRLSYAELNRRAN 3093 (5163)
T ss_pred HHH-HHHHhCCCCchhhccCCCHHHHHHHHHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCeEEeHHHHHHHHH
Confidence 888 7778889999999999999999998888777666666678999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHH
Q psy8155 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324 (617)
Q Consensus 245 ~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~ 324 (617)
++|++|.+.|+++|++|+|+++||+++++++|||+|+|++||||||++|.+|+.+|+++++++++|++... .+.
T Consensus 3094 ~lA~~L~~~gv~~~~~V~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~--~~~---- 3167 (5163)
T PRK12316 3094 RLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL--RLP---- 3167 (5163)
T ss_pred HHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccc--cCC----
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754 110
Q ss_pred hcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHH
Q psy8155 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA 404 (617)
Q Consensus 325 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~ 404 (617)
. .....++.++.... ..... .......++++|||+|||||||+||||+++|+++.+.+.+
T Consensus 3168 ~-~~~~~~~~~~~~~~-----------------~~~~~--~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~ 3227 (5163)
T PRK12316 3168 L-AQGVQVLDLDRGDE-----------------NYAEA--NPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCW 3227 (5163)
T ss_pred c-cCCccEEEeccccc-----------------ccccc--CCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHH
Confidence 0 11234444442110 00011 1112457889999999999999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC
Q psy8155 405 IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE 481 (617)
Q Consensus 405 ~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~ 481 (617)
....++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.++++++|++.++|+++..+++...
T Consensus 3228 ~~~~~~~~~~d~~l~~~~~~fd~~-~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~ 3306 (5163)
T PRK12316 3228 MQQAYGLGVGDRVLQFTTFSFDVF-VEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306 (5163)
T ss_pred HHHhhCCCcccEEEeecCccHHHH-HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhccc
Confidence 999999999999999999999887 6999999999999999864 689999999999999999999999999986532
Q ss_pred CCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC--C-CCCCCHHHHHHHHhhcCCCC-----
Q psy8155 482 KPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD--I-NKSLDVSAVSEGIKKALPSY----- 551 (617)
Q Consensus 482 ~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~--~-~~~~~~~~l~~~l~~~Lp~~----- 551 (617)
....+++|.++ ||+++++++++|.. +. .++|.|||||+++.+.. . ...... ..+++.+|..
T Consensus 3307 --~~~~~~lr~~~~gGe~l~~~~~~~~~~--~~-~l~n~YG~TE~~~~~~~~~~~~~~~~~----~~iG~p~~~~~~~i~ 3377 (5163)
T PRK12316 3307 --AHRCTSLKRIVCGGEALPADLQQQVFA--GL-PLYNLYGPTEATITVTHWQCVEEGKDA----VPIGRPIANRACYIL 3377 (5163)
T ss_pred --cccCCcceEEEEccccCCHHHHHHHHh--CC-cEeeccCCCccEeeEeEEeccCCCCCC----CccceecCCCEEEEE
Confidence 23467888876 89999999999983 44 69999999999765541 1 100000 0112222221
Q ss_pred ---CcCcEEEEeecc----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCc
Q psy8155 552 ---ARPLFIRCLREV----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNI 615 (617)
Q Consensus 552 ---~~P~~~~~~~~l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~ 615 (617)
..|.....++++ |.-..|++++..++++.| .+|+||| +|++++| |.|+|+||+|+|||++|+
T Consensus 3378 d~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGD-l~~~~~d-G~l~~~GR~d~qvKi~G~ 3455 (5163)
T PRK12316 3378 DGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGD-LARYRAD-GVIEYIGRVDHQVKIRGF 3455 (5163)
T ss_pred CCCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCc-eEEECCC-CCEEEecccCCeEeeCcE
Confidence 111111111222 334467888877776655 2488999 9999998 999999999999999999
Q ss_pred CC
Q psy8155 616 RL 617 (617)
Q Consensus 616 ~v 617 (617)
||
T Consensus 3456 rI 3457 (5163)
T PRK12316 3456 RI 3457 (5163)
T ss_pred ee
Confidence 97
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=624.48 Aligned_cols=566 Identities=15% Similarity=0.110 Sum_probs=420.3
Q ss_pred ccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----cc
Q psy8155 24 IYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LS 98 (617)
Q Consensus 24 ~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~ 98 (617)
++..+-.+.|++||+|++||. ||||+|++++++.||.++|++++++++++++||++|| .+
T Consensus 59 lL~r~sg~~dv~iG~~~~~R~---------------~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~i~~~l 123 (1389)
T TIGR03443 59 LVYRLTGDEDIVLGTSSNKSG---------------RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDELSEHI 123 (1389)
T ss_pred HHHHHcCCCceEEEeeeCCCC---------------ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHHHHHHh
Confidence 344456778999999999983 7999999999999999999999999999999999999 67
Q ss_pred CCCCccccCc-CCccccCC-CCccccccCCCCCccccccccccccc-----chhhhhhhhhccchhhhcccEEEEecccc
Q psy8155 99 DPPKNTTYNK-KGLCSRCE-PGVFIGKIVPSNPARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSGDLLVMDKWGY 171 (617)
Q Consensus 99 ~~~r~~~~~~-l~~~~~~~-~gl~~~~~~~~~~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 171 (617)
++.|+..++| +|++.... +..... .....++|||++.+.+.+ ..+|.+++|+.++++.+..+|..++ ..+
T Consensus 124 ~~~~~~~~~p~lf~~~~~~~~~~~~~--~~~~~~~~dl~~~v~~~~~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL-~~~ 200 (1389)
T TIGR03443 124 QAAKKLERTPPLFRLAFQDAPDNQQT--TYSTGSTTDLTVFLTPSSPELELSIYYNSLLFSSDRITIVADQLAQLL-SAA 200 (1389)
T ss_pred ccccCCCCCCccEEEEeecCCccccc--ccccCCccceEEEEEecCCcEEEEEEEchhcCCHHHHHHHHHHHHHHH-HHH
Confidence 8888887777 77753221 111111 114678999999988754 3599999999999999999999888 777
Q ss_pred ceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEE---------CCceecHHHHHHH
Q psy8155 172 LYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMF---------ENTEWTAQQVEAY 242 (617)
Q Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~---------~~~~lTy~eL~~~ 242 (617)
+.+|..++.+++++++.+.+.+.... ..........+++++|+++++++|+++|+++ +++++||+||+++
T Consensus 201 ~~~p~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~ 279 (1389)
T TIGR03443 201 SSNPDEPIGKVSLITPSQKSLLPDPT-KDLDWSGFRGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEA 279 (1389)
T ss_pred HhCcCCceecccCCCHHHHhhhhccc-cccCcCcccCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHH
Confidence 88999999999999998876542210 0001112246899999999999999999986 3578999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccch---HHHH
Q psy8155 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL---TDAV 319 (617)
Q Consensus 243 a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---~~~~ 319 (617)
++++|++|++.|+++|++|+|+++|++++++++|||+++|++|||+||.+|.+++.+++++++++++++.... ...+
T Consensus 280 ~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~ 359 (1389)
T TIGR03443 280 SNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLV 359 (1389)
T ss_pred HHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987642 1111
Q ss_pred HHHHHh-c--CCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC-CCCCCCCCCCCCCeEEEEEccCCCCCCceEEech
Q psy8155 320 QEISTS-L--GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT-SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISN 395 (617)
Q Consensus 320 ~~~~~~-~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh 395 (617)
...... . ......+.+.+......... .....+....... ..........++++|||+|||||||+||||+++|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh 437 (1389)
T TIGR03443 360 RDYIDKELELRTEIPALALQDDGSLVGGSL--EGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRH 437 (1389)
T ss_pred hhhhhcccccccccceEEeccccccccccc--ccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEecc
Confidence 111110 0 00111122211100000000 0000000000000 0011112346789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHH
Q psy8155 396 HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEM 472 (617)
Q Consensus 396 ~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~ 472 (617)
+++++.+.+....+++.++|++++.+|++|+.+ ++++|.+|+.|+++++++. .++..+++.|+++++|++.++|++
T Consensus 438 ~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~-~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~ 516 (1389)
T TIGR03443 438 FSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPI-QRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAM 516 (1389)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCceecch-HHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHH
Confidence 999999999999999999999999999999887 5889999999999999874 478899999999999999999999
Q ss_pred HHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe---CCCCCCCHHHHHHHHhhc
Q psy8155 473 CRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL---DINKSLDVSAVSEGIKKA 547 (617)
Q Consensus 473 ~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~---~~~~~~~~~~l~~~l~~~ 547 (617)
++.|.... ...+++||.++ ||++++...+++.+..+..+++|.||+||+++.+. ......+...+ ......
T Consensus 517 ~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~-~~~~~~ 592 (1389)
T TIGR03443 517 GQLLSAQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFL-KNLKDV 592 (1389)
T ss_pred HHHHHhcc---cccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchh-hcccCc
Confidence 99987543 23467888776 89999999999998877778999999999965444 11111111000 000011
Q ss_pred CC-CCCcCc-EEEEeec------c------------cCCccchhhhHHHhhcCC--------------------------
Q psy8155 548 LP-SYARPL-FIRCLRE------V------------EMTGTYKLKKLDLQKEGF-------------------------- 581 (617)
Q Consensus 548 Lp-~~~~P~-~~~~~~~------l------------P~t~~GK~dr~~L~~~g~-------------------------- 581 (617)
.| ...+|. .+.+++. + |....|+.++..++++.|
T Consensus 593 ~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1389)
T TIGR03443 593 MPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFW 672 (1389)
T ss_pred CcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCccccccccccccccccccc
Confidence 11 111111 2333331 1 222356666555443222
Q ss_pred -----CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 -----DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 -----~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.||+||| +|++++| |+|+|+||.|||||++|+||
T Consensus 673 ~~~~~~~y~TGD-lg~~~~d-G~l~~~GR~dd~Iki~G~rI 711 (1389)
T TIGR03443 673 LGPRDRLYRTGD-LGRYLPD-GNVECCGRADDQVKIRGFRI 711 (1389)
T ss_pred CCCccceeecCC-ceeEcCC-CCEEEecccCCEEEeCcEEe
Confidence 2388999 9999998 99999999999999999997
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=532.99 Aligned_cols=551 Identities=17% Similarity=0.159 Sum_probs=433.1
Q ss_pred ccceeEEEeccCCCccccCCC--CCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----
Q psy8155 24 IYPISIIRVDPVTSEPIRNKK--GLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF----- 96 (617)
Q Consensus 24 ~~~~~~~~~D~~~G~pva~R~--~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf----- 96 (617)
++..+-.+.|+++|+|++||. +.+. +.+||+|+||+++|.++.+..+|.+++.++++..+.+++||++||
T Consensus 31 ~l~r~~~~~~~~~g~~~~~r~~~~~~~---~~~ig~f~n~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~l~~ 107 (642)
T COG1020 31 LLSRWSGQEDIVLGLPVAGRPLALPDV---EQLIGLFANTLPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQLVE 107 (642)
T ss_pred HHHHhCCCCCEEEeeeecCCCccccch---HhhccchheeeeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 344456778999999999994 5666 999999999999999999999999999999999999999999998
Q ss_pred ccCCCCccccCcCCccccC----------CCCccccc-cCCCCCccccccccccccc---chhhhhhhhhccchhhhccc
Q psy8155 97 LSDPPKNTTYNKKGLCSRC----------EPGVFIGK-IVPSNPARAYLGYVNEKDS---AKKIFTDVFEIGDSAFLSGD 162 (617)
Q Consensus 97 ~~~~~r~~~~~~l~~~~~~----------~~gl~~~~-~~~~~~~~~dl~~~~~~~~---~~~~~~~~f~~~~~~~~~~~ 162 (617)
.+.+.|+.. +|+|++... .+++.... ......++||+++...+.+ ..+|.+++|+.++++.+..+
T Consensus 108 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (642)
T COG1020 108 RLGRERSLS-EPLFDVVFVLQNGPTAGLKLPGLRVEELGIETPAAKLDLALAVVEGGLRLSFDYARELFDAETIERELRH 186 (642)
T ss_pred HHhhhccCC-CCceeeEEEecCcccccccccccccccccccCcccccceEEEEEeCceEEEEEeecccCCHHHHHHHHHH
Confidence 677777777 777776211 13333333 2226788999999988862 45899999999999999999
Q ss_pred EEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHH
Q psy8155 163 LLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242 (617)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~ 242 (617)
+..++ ..+...+...+..++++...++ ..|+......+...++++.|.+++.+.|+++|+++.+.++||+||+.+
T Consensus 187 ~~~~l-~~~~~~~~~~~~~l~ll~~~e~----~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~~lty~el~~~ 261 (642)
T COG1020 187 FLQLL-AALADAPRTSLSALPLLLPSER----EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDAR 261 (642)
T ss_pred HHHHH-HHHHhCcccCcccCCCCCHHHH----hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCCcccHHHHHHH
Confidence 99887 6667777789999999999998 224444444445578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHH
Q psy8155 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322 (617)
Q Consensus 243 a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~ 322 (617)
++++|+.|.+.|+++++.|+++++++.+++++++|++|+|++|+|+||.+|.+|+.+++++++++++++..........
T Consensus 262 a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~- 340 (642)
T COG1020 262 ANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG- 340 (642)
T ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998433221100
Q ss_pred HHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH
Q psy8155 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 402 (617)
Q Consensus 323 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~ 402 (617)
++. +.++... ...+...+. .....+++.+|++|||||||+||||+++|+++.+.+
T Consensus 341 ---~~~----~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~ 395 (642)
T COG1020 341 ---LPG----LALDDAL-----------------SEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLL 395 (642)
T ss_pred ---CCc----ccccccc-----------------ccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHH
Confidence 000 1111100 000111110 122356899999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcC
Q psy8155 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLST 479 (617)
Q Consensus 403 ~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~ 479 (617)
.+....++++.+|+++...+++|+.+ ++++|.++..|+++++.+. .++..+.+.++++++|++..+|+++..++..
T Consensus 396 ~~~~~~~~~~~~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 396 NDAGARFGLDADDRVLALASLSFDAS-VFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred HHHHHhcCCCcccEEeecCCcccchh-HHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 99999999999999999999999887 6999999999999999874 6899999999999999999999999999876
Q ss_pred CCCCC--CccCceeeee--ccCCCHHHHHHHHHHcC-cccccccccccccceEEe----CCCCCCCHHHHHHHHhhcCCC
Q psy8155 480 PEKPE--DKAHNVRLMF--GNGLRPQIWSEFVDRFR-IAQIGEFYGATEGMAAIL----DINKSLDVSAVSEGIKKALPS 550 (617)
Q Consensus 480 ~~~~~--~~l~~lr~v~--Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~v~----~~~~~~~~~~l~~~l~~~Lp~ 550 (617)
..... ...+.+|.+. ||+++.++..++....+ ...++|.|||||+...+. ...... .-.++..++.
T Consensus 475 ~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~-----~~piG~p~~n 549 (642)
T COG1020 475 ALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELES-----RVPIGRPVAN 549 (642)
T ss_pred hhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCC-----CCCcceeeCC
Confidence 32222 1223467665 88999999999988765 347999999999744333 111110 0001111111
Q ss_pred --------CCcCcEEEEeecccCCc----cchhhhHHHhhcCCCC---CccCCeeEEEeCCCceeeCCHHHHHHHhcCCc
Q psy8155 551 --------YARPLFIRCLREVEMTG----TYKLKKLDLQKEGFDP---NVIQDRLYYLSSKGVYEELTPEVYKDLVQGNI 615 (617)
Q Consensus 551 --------~~~P~~~~~~~~lP~t~----~GK~dr~~L~~~g~~~---~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~ 615 (617)
...+....+.+++..++ -|+..|..++++.|.. |+||| ++++.+| |.+.++||.|+++|++|+
T Consensus 550 ~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD-~~r~~~d-g~~e~lgr~D~qvki~g~ 627 (642)
T COG1020 550 TQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGD-LARPLAD-GALEYLGRKDSQVKIRGF 627 (642)
T ss_pred CeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCC-eeeECCC-CeEEEeccccceeEeceE
Confidence 11222222222333333 3466888888888844 79999 9999998 999999999999999999
Q ss_pred CC
Q psy8155 616 RL 617 (617)
Q Consensus 616 ~v 617 (617)
||
T Consensus 628 Ri 629 (642)
T COG1020 628 RI 629 (642)
T ss_pred ec
Confidence 97
|
|
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=424.21 Aligned_cols=401 Identities=21% Similarity=0.277 Sum_probs=322.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
...|+.+.++-.+++.||+.|.++. +.++||+|+.+.++.+|+.|.+.|+++||+|+|..||+.+|+..+|||.++|.
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~ 127 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGL 127 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhce
Confidence 3579999999999999999999885 77899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch-----HHHHHHHHHhc-------------CCCeEEEEeCCCCCCCCCC
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQEISTSL-------------GSNVKLFSWSPDTDSSSSP 345 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~-----~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~ 345 (617)
+.|++||+|+.+++++.|++.+++++|+.+.+ .+.+.++..+. +...+++..+++. +
T Consensus 128 v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~-----~ 202 (596)
T KOG1177|consen 128 VLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH-----P 202 (596)
T ss_pred EEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC-----c
Confidence 99999999999999999999999999998753 33344443332 2223344444222 2
Q ss_pred CCCcCCcchhhccCCCCC----CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcC
Q psy8155 346 VPRSQALSPLLSEVPTSP----PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPL 421 (617)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 421 (617)
..+...+++++...+.+. +.......|++++.|.|||||||.|||+.+||.|++|.......+.++.++++++...
T Consensus 203 ~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~ 282 (596)
T KOG1177|consen 203 LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPN 282 (596)
T ss_pred CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecC
Confidence 233555666655443321 1122345789999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCC
Q psy8155 422 PLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGL 498 (617)
Q Consensus 422 p~~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l 498 (617)
|++|..|++...+.+|..|+|+|++. .+++...++.|+++++|.++.+|+|+..|++.+.....+++++|-.+ |+++
T Consensus 283 Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~ 362 (596)
T KOG1177|consen 283 PLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPV 362 (596)
T ss_pred chHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCC
Confidence 99999998899999999999999965 69999999999999999999999999999999998888999998766 8889
Q ss_pred CHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeeccc
Q psy8155 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLREVE 564 (617)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~lP 564 (617)
|+++.+++........+.-.||+|||...+.-+--....++..+.....+|.+. +|..+.+.+.
T Consensus 363 s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY-- 440 (596)
T KOG1177|consen 363 SPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGY-- 440 (596)
T ss_pred CHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEec--
Confidence 999999999977665789999999998766633222234444444444444432 2222222221
Q ss_pred CCccchh-----hhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 565 MTGTYKL-----KKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 565 ~t~~GK~-----dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
-|..|+. -+....++.| +.||| +|.+|++ |+++|+||.||||+.||+||
T Consensus 441 ~tMl~Ywg~~~kT~eti~~drW--~~TGD-i~~m~en-G~i~iVGRskdmI~rGGENV 494 (596)
T KOG1177|consen 441 STMLGYWGEEEKTKETIGNDRW--YDTGD-IAVMDEN-GTIEIVGRSKDMIIRGGENV 494 (596)
T ss_pred hhheeecCCcccchhhcccccc--eecCc-eEEEcCC-CcEEEEEcccCeEEeCCccc
Confidence 1222222 2345667888 55999 9999998 99999999999999999997
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=462.34 Aligned_cols=396 Identities=26% Similarity=0.370 Sum_probs=315.2
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCce--ecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~--lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
....++.+++.++++++|+++|+++.+.. +||+||+++++++|++|++.|+++||+|+|+++|+++++++++||+++|
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~G 87 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAG 87 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 34578999999999999999999998777 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCc-CCcchhhccCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRS-QALSPLLSEVPT 361 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 361 (617)
++.+||+|.+..+++.++++++++++++++.++.+....+....+....+......... . ..+.+.....+.
T Consensus 88 av~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 160 (534)
T COG0318 88 AVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDR-------LPITLEALAAEGPG 160 (534)
T ss_pred EEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEeccccccc-------ccccHHHHhhccCC
Confidence 99999999999999999999999999999988666666555444222222222211110 0 123344222222
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC--CCCCCEEEEcCcchhhHHHHHHHHHHhHc
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--FRTKDRFYTPLPLYHTAGGAMCIGQALIF 439 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~~~~L~~ 439 (617)
..... ...+++++|+|+|||||||.||||++||+|++.........++ ++++|+++.++|++|+.|+...++.++..
T Consensus 161 ~~~~~-~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~ 239 (534)
T COG0318 161 PDADA-RPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLG 239 (534)
T ss_pred ccccc-CCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHc
Confidence 21111 1267899999999999999999999999999999999988988 89999999999999999987777777999
Q ss_pred CcEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCc-eeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 440 GCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN-VRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 440 G~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~-lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
|+++++.+ .+++..++..+.++++|++.++|+++..|++++.....+.++ ||.++ |++++++++++|.++++..+
T Consensus 240 G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~ 319 (534)
T COG0318 240 GGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIA 319 (534)
T ss_pred CCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCc
Confidence 99999998 599999999999999999999999999999998877666665 99988 67799999999999998657
Q ss_pred ccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-----cc-----------cCCccchhhhHHHhh
Q psy8155 515 IGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-----EV-----------EMTGTYKLKKLDLQK 578 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-----~l-----------P~t~~GK~dr~~L~~ 578 (617)
+++.||+||+...++....... .......+..+|. ..+.+++ .+ |.-..|+.++...++
T Consensus 320 i~~~YG~TE~~~~~~~~~~~~~-~~~~~~~G~~~pg----~~v~Ivd~~~~~~~pg~vGei~irgp~v~~GY~~~pe~t~ 394 (534)
T COG0318 320 ILEGYGLTETSPVVTINPPDDL-LAKPGSVGRPLPG----VEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWNRPEATA 394 (534)
T ss_pred eEEeecccccCceeecCCCchh-hhcCCcccccCCC----cEEEEEeCCCCccCCCCceEEEEECchhhhhhcCChHHHH
Confidence 9999999999765552221111 0000111222222 2344443 12 333356666655554
Q ss_pred c-----CCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 E-----GFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~-----g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+ || ++||| +|++|+| |+++|+||.||+||+||+||
T Consensus 395 ~~f~~~gW--~~TGD-lg~~d~~-G~l~i~gR~kd~I~~gG~ni 434 (534)
T COG0318 395 EAFDEDGW--LRTGD-LGYVDED-GYLYIVGRLKDLIISGGENI 434 (534)
T ss_pred HhhccCCe--eeecc-eEEEcCC-ccEEEEeccceEEEeCCeEE
Confidence 4 78 77999 9999998 99999999999999999997
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=444.46 Aligned_cols=391 Identities=22% Similarity=0.271 Sum_probs=299.8
Q ss_pred HHhhCCCc-eEEEECC---ceecHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCC
Q psy8155 217 HAVRSPNK-VIFMFEN---TEWTAQQVEAYSNRVANFFLAQG--LKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 217 ~a~~~p~~-~Al~~~~---~~lTy~eL~~~a~~lA~~L~~~g--v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp 290 (617)
.+...+++ +++++.. ..+||+|+.+++.|+|.+|.++| +++||+|++++||+++++.+++||+.+|+++.|++|
T Consensus 25 ~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np 104 (537)
T KOG1176|consen 25 PAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNP 104 (537)
T ss_pred cccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCc
Confidence 33344444 7777764 99999999999999999999876 888999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCC--CCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD--SSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 291 ~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
.+.+.++.+.++++++++++++.+..+.+.+....+. ..++++..... ...........+..+........ ..
T Consensus 105 ~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 179 (537)
T KOG1176|consen 105 RLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG---IR 179 (537)
T ss_pred ccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCCcc---cc
Confidence 9999999999999999999999999999888776665 44444443311 00000000111222222211111 34
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
..+.+|++.|.|||||||.||||++||++++...........++..|+.++.+|++|..|+..-+.+.+..|+++++.+.
T Consensus 180 ~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~ 259 (537)
T KOG1176|consen 180 PVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRK 259 (537)
T ss_pred cCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCC
Confidence 56779999999999999999999999999999888777777888899999999999999975544456777777777778
Q ss_pred CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 449 ~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
++++.+++.|++|+||++.++|.++..|++.+.....+++++|.+. |+++++++.+++.+++|...+.++||+||+..
T Consensus 260 f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~ 339 (537)
T KOG1176|consen 260 FDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGG 339 (537)
T ss_pred CCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccC
Confidence 8999999999999999999999999999999877778999999995 77899999999999999668999999999975
Q ss_pred EEe-CCCCC----CCHHHHH--------HHHhhcCCCCCcCcEEEEeecccCCccchh---hhHHHhhcCCCCCccCCee
Q psy8155 527 AIL-DINKS----LDVSAVS--------EGIKKALPSYARPLFIRCLREVEMTGTYKL---KKLDLQKEGFDPNVIQDRL 590 (617)
Q Consensus 527 ~v~-~~~~~----~~~~~l~--------~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~---dr~~L~~~g~~~~~TGD~l 590 (617)
.+. ....+ .+...+. ......+|.-+. ..+.+.+.--+.++-|. .+..++++|| ++||| +
T Consensus 340 ~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~-GEI~vrg~~imkGY~~NpeaT~~~~~~~GW--~~TGD-i 415 (537)
T KOG1176|consen 340 LITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT-GEICVRGPQVMKGYLKNPEATKEAFDDDGW--FHTGD-L 415 (537)
T ss_pred ceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc-eEEEEECcccchhhcCChHHHHhhcccCCc--cccCc-e
Confidence 554 21111 1111111 112223333222 23333333333332222 3446777799 55999 9
Q ss_pred EEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 591 YYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 591 g~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
||+|+| |||||+||.||+||.+|++|
T Consensus 416 Gy~D~D-G~l~IvdR~KdlIk~~G~qv 441 (537)
T KOG1176|consen 416 GYFDED-GYLYIVDRSKDLIKYGGEQV 441 (537)
T ss_pred EEEcCC-CeEEEecchhhheeeCCEEe
Confidence 999998 99999999999999999986
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=413.60 Aligned_cols=409 Identities=50% Similarity=0.857 Sum_probs=362.7
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECC--ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~--~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
......+++++|..+|+++|+++|+++.+ +++||+|++++++++|+.|...|++.||.||++|+|+++++..+||.+|
T Consensus 72 ~rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaK 151 (649)
T KOG1179|consen 72 SRRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAK 151 (649)
T ss_pred hhccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHh
Confidence 55668899999999999999999999986 7999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC-CCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
+|++..-||++...+-+.+.+..++++.+|++.++.+.+.++.+.+. ..+..+..+.... .++..++.+.++..
T Consensus 152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~-----~~g~~~L~~~l~~~ 226 (649)
T KOG1179|consen 152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV-----PDGIESLLAKLSAA 226 (649)
T ss_pred hCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC-----CchHHHHHHhhccc
Confidence 99999999999999999999999999999999999988887754443 2345555543221 12233444444444
Q ss_pred CCCC-C-CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHh
Q psy8155 360 PTSP-P-SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437 (617)
Q Consensus 360 ~~~~-~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L 437 (617)
+..+ + ......+-.++++.||||||||.||+.+++|.-...........++++++|+++..+|++|.++.+..+..+|
T Consensus 227 ~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l 306 (649)
T KOG1179|consen 227 PKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCL 306 (649)
T ss_pred ccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHH
Confidence 4443 2 2233456678999999999999999999999999988887888999999999999999999999999999999
Q ss_pred HcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeeeccCCCHHHHHHHHHHcCcccccc
Q psy8155 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 438 ~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
..|+|+|+..++++..+|+.+.+|++|+...+-.+.++|++.+..+.+.-+.+|+..|..+.++++++|.++|+..++.+
T Consensus 307 ~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE 386 (649)
T KOG1179|consen 307 LHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGE 386 (649)
T ss_pred hcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEE
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999989999
Q ss_pred ccccccc-------------------------------------------------------------------------
Q psy8155 518 FYGATEG------------------------------------------------------------------------- 524 (617)
Q Consensus 518 ~YG~TE~------------------------------------------------------------------------- 524 (617)
.||+||.
T Consensus 387 ~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~G 466 (649)
T KOG1179|consen 387 FYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLG 466 (649)
T ss_pred EeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhcc
Confidence 9999999
Q ss_pred --------------------------------------------------------------------------------
Q psy8155 525 -------------------------------------------------------------------------------- 524 (617)
Q Consensus 525 -------------------------------------------------------------------------------- 524 (617)
T Consensus 467 Y~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~V 546 (649)
T KOG1179|consen 467 YAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTV 546 (649)
T ss_pred ccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEec
Confidence
Q ss_pred --------ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCCCCCccCCeeEEEeC
Q psy8155 525 --------MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSS 595 (617)
Q Consensus 525 --------~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~ 595 (617)
+++++ .+....+.+.+..++++.||+|.+|..+.+.+++++|++-|..|..|.++||++-.-+|+++++|+
T Consensus 547 P~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~egf~p~~~~dply~~~~ 626 (649)
T KOG1179|consen 547 PGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKEGFNPAIISDPLYYLDN 626 (649)
T ss_pred CCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHccCCccccCCceEEEec
Confidence 66666 788889999999999999999999999999999999999999999999999988778999999999
Q ss_pred CCc-eeeCCHHHHHHHhcCCcC
Q psy8155 596 KGV-YEELTPEVYKDLVQGNIR 616 (617)
Q Consensus 596 d~G-~l~i~GR~~d~I~~~G~~ 616 (617)
++. |.-++.-+.+.|..|-.|
T Consensus 627 ~~~~y~Plt~~~y~~i~~g~~~ 648 (649)
T KOG1179|consen 627 AGKSYVPLTQEMYSAISAGELK 648 (649)
T ss_pred cCCccccCCHHHHHHHhcCccC
Confidence 833 666777777777766544
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=448.58 Aligned_cols=392 Identities=22% Similarity=0.313 Sum_probs=303.7
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++.++|+++++++|+++|++++++++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|+++||+
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEECCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
++.++.+++.+++++++++++|++++..+.+..+....+. ...+........ ........+++++........
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---- 202 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGR-LRAWGGNPDDDE--PSGSTDETLDDLIAGSSTAPL---- 202 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcccccc-ceEEEEecCccc--cCCcCcccHHHHhcCCCCCCC----
Confidence 9999999999999999999999998877766554333322 222222111100 111224455555543222111
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
+..+++.++|+|||||||+||||+++|+++.+.+.+....+++.++++++...|++|..++ ..++.++..|+++++.+.
T Consensus 203 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~ 281 (549)
T PRK07788 203 PKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRR 281 (549)
T ss_pred CCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCC
Confidence 2245688999999999999999999999999988888888899999999999999999986 567789999999999988
Q ss_pred CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccccc
Q psy8155 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524 (617)
Q Consensus 449 ~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 524 (617)
+++..+++.++++++|++.++|+++..+++.... ...++++||.++ |+++++++.++|.+.++. .++|.||+||+
T Consensus 282 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~l~~~YG~TE~ 360 (549)
T PRK07788 282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGP-VLYNLYGSTEV 360 (549)
T ss_pred CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCc-cceeccCcchh
Confidence 9999999999999999999999999999987654 445678999887 888999999999999986 69999999998
Q ss_pred ceEEeCCCCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHH-HhhcCCCCCccCCe
Q psy8155 525 MAAILDINKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLD-LQKEGFDPNVIQDR 589 (617)
Q Consensus 525 ~~~v~~~~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~-L~~~g~~~~~TGD~ 589 (617)
........... ..-...++..+|.. ..+..+.+-+..+. .|+.+... -..+|| ++|||
T Consensus 361 ~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~--~gY~~~~~~~~~~g~--~~TGD- 433 (549)
T PRK07788 361 AFATIATPEDL--AEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPF--EGYTDGRDKQIIDGL--LSSGD- 433 (549)
T ss_pred chhhccChhhh--hhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCcc--ccccCCCcccccCCc--eecCc-
Confidence 54333111000 00000111112111 11122222222222 23332211 123677 77999
Q ss_pred eEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 590 LYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 590 lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|++|+| |+++|+||.||+||++|+||
T Consensus 434 l~~~~~~-g~l~~~GR~dd~i~~~G~~v 460 (549)
T PRK07788 434 VGYFDED-GLLFVDGRDDDMIVSGGENV 460 (549)
T ss_pred eEEEcCC-CCEEEeccCcceEEECCEEE
Confidence 9999998 99999999999999999986
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=459.68 Aligned_cols=397 Identities=17% Similarity=0.135 Sum_probs=301.8
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEE----CC-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMF----EN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~----~~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
+...|++++|+++++++|+++|+.+ .+ +.+||+||+++++++|++|+++|+++|++|+|+++|+++|++++
T Consensus 41 ~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 120 (651)
T PLN02736 41 PEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120 (651)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 3446899999999999999999943 11 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCC----CCCCCcCC
Q psy8155 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS----SPVPRSQA 351 (617)
Q Consensus 276 lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 351 (617)
+||+++|+++||+++.++.+++.+++++++++++|++.+..+.+..+...++....++..+....... ........
T Consensus 121 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 200 (651)
T PLN02736 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT 200 (651)
T ss_pred HHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEE
Confidence 99999999999999999999999999999999999998877776666555555455555543211000 00001233
Q ss_pred cchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH
Q psy8155 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 431 (617)
++++++....... ......++++|+|+|||||||.||||++||++++..+.+....+++.++|++++++|++|..++ .
T Consensus 201 ~~~~~~~~~~~~~-~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~-~ 278 (651)
T PLN02736 201 YSKLLAQGRSSPQ-PFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYER-V 278 (651)
T ss_pred HHHHHHhcccCCC-CCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHH-H
Confidence 4444433221111 1123478999999999999999999999999999999988888899999999999999999996 4
Q ss_pred HHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC-----------------------------C
Q psy8155 432 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE-----------------------------K 482 (617)
Q Consensus 432 ~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~-----------------------------~ 482 (617)
.++.+|..|+++++.+. ++..+++.|+++++|++..+|++++.+.+... .
T Consensus 279 ~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (651)
T PLN02736 279 NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN 357 (651)
T ss_pred HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67789999999998765 88999999999999999999999988765310 0
Q ss_pred CCC------------cc-Cceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCC-CCCHHHHHHHHhh
Q psy8155 483 PED------------KA-HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINK-SLDVSAVSEGIKK 546 (617)
Q Consensus 483 ~~~------------~l-~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~-~~~~~~l~~~l~~ 546 (617)
... .+ +++|.++ |+++++++.+++.+.++. .++|.||+||+.+.+..... .... ..++.
T Consensus 358 ~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~-~~~~~YG~TE~~~~~~~~~~~~~~~----~~vG~ 432 (651)
T PLN02736 358 PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGG-RVLEGYGMTETSCVISGMDEGDNLS----GHVGS 432 (651)
T ss_pred CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCC-CeEEEechHHhchheeccCCCCCCC----CccCC
Confidence 000 01 4788887 788999999999988886 69999999998655442111 0000 11222
Q ss_pred cCCCCCcCcEEEEee----------------cc----cCCccchhhhHHH-----hhcCCCCCccCCeeEEEeCCCceee
Q psy8155 547 ALPSYARPLFIRCLR----------------EV----EMTGTYKLKKLDL-----QKEGFDPNVIQDRLYYLSSKGVYEE 601 (617)
Q Consensus 547 ~Lp~~~~P~~~~~~~----------------~l----P~t~~GK~dr~~L-----~~~g~~~~~TGD~lg~~d~d~G~l~ 601 (617)
.+|.. .+.+++ ++ |.-..|+.++... .++|| ++||| +|++|+| |+|+
T Consensus 433 p~pg~----~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw--~~TGD-lg~~d~d-G~l~ 504 (651)
T PLN02736 433 PNPAC----EVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGW--LHTGD-IGLWLPG-GRLK 504 (651)
T ss_pred ccCce----EEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCC--eeccc-eEEEcCC-CcEE
Confidence 23321 122222 11 2223455544433 35788 77999 9999998 9999
Q ss_pred CCHHHHHHHhc-CCcCC
Q psy8155 602 LTPEVYKDLVQ-GNIRL 617 (617)
Q Consensus 602 i~GR~~d~I~~-~G~~v 617 (617)
|+||.||+||+ +|+||
T Consensus 505 i~GR~kd~ik~~~G~~V 521 (651)
T PLN02736 505 IIDRKKNIFKLAQGEYI 521 (651)
T ss_pred EEEechhheEcCCCcEe
Confidence 99999999996 79987
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=452.84 Aligned_cols=403 Identities=19% Similarity=0.185 Sum_probs=301.2
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
....++.++|+++++++|+++|++++++++||+||+++++++|++|.+.|+++|++|+|+++|+++++++++||+++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav 83 (563)
T PLN02860 4 HSQAHICQCLTRLATLRGNAVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGI 83 (563)
T ss_pred hhhhHHHHHHHHHHHhcCCceEEecCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHH-HhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS-TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
++||||.++.+++.++++++++++++++.+......... ..++.....+..++...............+++...... .
T Consensus 84 ~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (563)
T PLN02860 84 VAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG-T 162 (563)
T ss_pred EEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc-c
Confidence 999999999999999999999999999886544333322 12222222333332110000000001111111111000 0
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 364 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
........++++++|+|||||||+||||+++|+++..........++++++|+++..+|++|+.++ ..++.+|..|+++
T Consensus 163 ~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~ 241 (563)
T PLN02860 163 TELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGACH 241 (563)
T ss_pred ccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccH-HHHHHHHHcCceE
Confidence 111123467899999999999999999999999998877777778899999999999999999986 5688999999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC--CCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP--EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 444 vi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
++.+++++..+++.|+++++|++.++|+++..|++..... ...+++||.++ |+++++++.++|.+.+++..++|.|
T Consensus 242 v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y 321 (563)
T PLN02860 242 VLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY 321 (563)
T ss_pred EecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence 9999999999999999999999999999999998764322 23567899887 8889999999999999766899999
Q ss_pred cccccceEEeC--CCCC-C--CHHHHHH---------------HHhhcCCCCCcCcEEEEe-------ecc----cCCcc
Q psy8155 520 GATEGMAAILD--INKS-L--DVSAVSE---------------GIKKALPSYARPLFIRCL-------REV----EMTGT 568 (617)
Q Consensus 520 G~TE~~~~v~~--~~~~-~--~~~~l~~---------------~l~~~Lp~~~~P~~~~~~-------~~l----P~t~~ 568 (617)
|+||++..+.. .... . ....+.. .+++.+|.. .+.++ +++ |....
T Consensus 322 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~----~v~i~~~~~g~~Gel~v~g~~~~~ 397 (563)
T PLN02860 322 GMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHV----ELKIGLDESSRVGRILTRGPHVML 397 (563)
T ss_pred CccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCc----EEEEecCCCCceeEEEEecCcccc
Confidence 99998654331 1110 0 0000000 112222221 12221 121 23334
Q ss_pred chhhhHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.++.. +.++|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 398 GY~~~~~~t~~~~~~~g~--~~TGD-l~~~d~d-G~l~~~GR~~d~i~~~G~~v 447 (563)
T PLN02860 398 GYWGQNSETASVLSNDGW--LDTGD-IGWIDKA-GNLWLIGRSNDRIKTGGENV 447 (563)
T ss_pred cccCCccccchhccCCCe--EEccc-eEEEcCC-CCEEEeecccceeEECCEEc
Confidence 5554333 334677 77999 9999997 99999999999999999986
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-51 Score=456.83 Aligned_cols=400 Identities=14% Similarity=0.126 Sum_probs=297.6
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEEC--C---ceecHHHHHHHHHHHHHHHHH---CCCCCC-----------CEEEE
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFE--N---TEWTAQQVEAYSNRVANFFLA---QGLKKG-----------DSVAL 263 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~--~---~~lTy~eL~~~a~~lA~~L~~---~gv~~g-----------~~V~i 263 (617)
......|+.++|.++++++|+++|+++. + +.+||+||.++++++|++|.+ +|+++| ++|+|
T Consensus 56 ~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i 135 (746)
T PTZ00342 56 SLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGL 135 (746)
T ss_pred cccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEE
Confidence 3345679999999999999999999973 2 689999999999999999997 499998 99999
Q ss_pred EcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCC
Q psy8155 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS 343 (617)
Q Consensus 264 ~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 343 (617)
+++|+++|+++.+||+++|++.||+++.++.+++.++|+++++++++++.+..+.+.++...++....+++++.......
T Consensus 136 ~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~ 215 (746)
T PTZ00342 136 YGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKE 215 (746)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCcccc
Confidence 99999999999999999999999999999999999999999999999988887777776666666667777765221000
Q ss_pred ----------------CCCC---------------------------------------------CcCCcchhhccCCCC
Q psy8155 344 ----------------SPVP---------------------------------------------RSQALSPLLSEVPTS 362 (617)
Q Consensus 344 ----------------~~~~---------------------------------------------~~~~~~~~~~~~~~~ 362 (617)
.... ....+++......
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 293 (746)
T PTZ00342 216 ININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-- 293 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc--
Confidence 0000 0000111111100
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh--CCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI--GFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
........+|+|+|+|+|||||||.||||++||+|+++.+....... ...+.+++++++|++|..+++. .+.++..|
T Consensus 294 ~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G 372 (746)
T PTZ00342 294 TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVI-AYLSFMLG 372 (746)
T ss_pred cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHH-HHHHHHcC
Confidence 01112245789999999999999999999999999998876654332 2335689999999999999754 56789999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcC--------CCCCC----------------------------
Q psy8155 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST--------PEKPE---------------------------- 484 (617)
Q Consensus 441 ~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~--------~~~~~---------------------------- 484 (617)
+++++.+. ++..+++.|+++++|++.++|.+++.|.+. +....
T Consensus 373 ~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v 451 (746)
T PTZ00342 373 GTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHI 451 (746)
T ss_pred CEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 99999875 899999999999999999999999988752 11000
Q ss_pred ------CccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe-CCCCCCCHHHHHHHHhhcC-CCCC--
Q psy8155 485 ------DKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKAL-PSYA-- 552 (617)
Q Consensus 485 ------~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~L-p~~~-- 552 (617)
...++||.++ |+++++++.+.|.+.++. .++++||+||+.+.+. ........ ..++..+ |...
T Consensus 452 ~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~-~i~~gYGlTEt~~~~~~~~~~~~~~----gsvG~p~~pg~e~k 526 (746)
T PTZ00342 452 SSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNV-NYYQGYGLTETTGPIFVQHADDNNT----ESIGGPISPNTKYK 526 (746)
T ss_pred HHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCC-CEEEeeccCcccceeeeccCCCCCc----ccccCcCCCcEEEE
Confidence 0125888887 788999999999998886 6999999999965444 21111111 1112222 1110
Q ss_pred ------------cC-cEEEEeecccCCccchhhhHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHh-cC
Q psy8155 553 ------------RP-LFIRCLREVEMTGTYKLKKLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLV-QG 613 (617)
Q Consensus 553 ------------~P-~~~~~~~~lP~t~~GK~dr~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~-~~ 613 (617)
.| ..+.+.+ |....|+.++.+ +.++|| ++||| +|++|+| |+|+|+||+||+|| .+
T Consensus 527 i~d~~~~~~~~~~~~GEl~vrG--p~v~~GY~~~pe~T~~~f~~dGW--~~TGD-ig~~d~d-G~l~i~gR~kdlIkls~ 600 (746)
T PTZ00342 527 VRTWETYKATDTLPKGELLIKS--DSIFSGYFLEKEQTKNAFTEDGY--FKTGD-IVQINKN-GSLTFLDRSKGLVKLSQ 600 (746)
T ss_pred EecccccccCCCCCceEEEEec--CcccccccCChhhhhhhcCcCCc--ccCCc-EEEECCC-CeEEEEccCCCeEEeCC
Confidence 01 1222222 233345555444 345777 77999 9999998 99999999999999 58
Q ss_pred CcCC
Q psy8155 614 NIRL 617 (617)
Q Consensus 614 G~~v 617 (617)
|+||
T Consensus 601 Ge~I 604 (746)
T PTZ00342 601 GEYI 604 (746)
T ss_pred CEEE
Confidence 9986
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=448.71 Aligned_cols=391 Identities=17% Similarity=0.146 Sum_probs=298.5
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECC-ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFEN-TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~-~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
....++.+.|.+.++++|+++|+.+.+ +++||+||.++++++|+.|.+ .+|++|+|+++|++++++++|||+++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~ 92 (539)
T PRK06334 16 RSGKTVLESFLKLCSEMTTATVCWDEQLGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGK 92 (539)
T ss_pred CcCCcHHHHHHHHHHhCCCceEEEeCCCCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCC
Confidence 445789999999999999999998875 799999999999999999987 3899999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHh-cCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc-----
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS-LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS----- 357 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----- 357 (617)
++||+||.++.+++.++++++++++++++.+..+.+.+.... ......++.+++... ...+.+...
T Consensus 93 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~ 164 (539)
T PRK06334 93 IPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK--------ELSFWEKCRIGIYM 164 (539)
T ss_pred eeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh--------hccHHHhhhhhhhh
Confidence 999999999999999999999999999998776665544322 111123343332110 000000000
Q ss_pred cCCCC---CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 358 EVPTS---PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 358 ~~~~~---~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
..+.. .........++++++|+|||||||.||||+++|+++.+...+....++++++|++++.+|++|..++...++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 244 (539)
T PRK06334 165 SIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTL 244 (539)
T ss_pred cCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHH
Confidence 00000 000112356799999999999999999999999999998888888889999999999999999998866788
Q ss_pred HHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcC
Q psy8155 435 QALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFR 511 (617)
Q Consensus 435 ~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~ 511 (617)
.++..|+++++.+ .+++..+++.|+++++|++.++|++++.|++........+++||.++ |+++++++.++|.+.++
T Consensus 245 ~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~ 324 (539)
T PRK06334 245 FPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFP 324 (539)
T ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCC
Confidence 8999999999876 58999999999999999999999999999887655556788999887 88899999999999997
Q ss_pred cccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhh
Q psy8155 512 IAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKK 573 (617)
Q Consensus 512 ~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr 573 (617)
...++|.||+||+...+.. ....... ...++..+|.. .+.++++ + |....|+.++
T Consensus 325 ~~~i~~~YG~TE~~~~~~~~~~~~~~~---~~~vG~p~~g~----~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~ 397 (539)
T PRK06334 325 HIQLRQGYGTTECSPVITINTVNSPKH---ESCVGMPIRGM----DVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGE 397 (539)
T ss_pred CCeEEecccccccCceEEeccCCCCCC---CCcCceecCCC----EEEEEcCCCCccCCCCceEEEEEecCcccccccCC
Confidence 6689999999998655441 1111000 00122222221 2222221 1 1222344433
Q ss_pred HHH------hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 574 LDL------QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 574 ~~L------~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
... ..+|| ++||| +|++|++ |+++|+||.||+||++|+||
T Consensus 398 ~~~~~~~~~~~~~w--~~TGD-~g~~d~~-G~l~~~GR~~d~ik~~G~~v 443 (539)
T PRK06334 398 DFGQGFVELGGETW--YVTGD-LGYVDRH-GELFLKGRLSRFVKIGAEMV 443 (539)
T ss_pred cccccceeeCCcee--EECCC-EEEECCC-CeEEEEeccCCeEEECCEEE
Confidence 221 12456 77999 9999998 99999999999999999986
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=457.27 Aligned_cols=398 Identities=15% Similarity=0.113 Sum_probs=289.8
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC-------C--ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE-------N--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~-------~--~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~l 276 (617)
...|+.++|+++++++|+++|+.+. + +.+||+||+++++++|++|.++|+++||+|+|+++|+++|++++|
T Consensus 41 ~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 120 (660)
T PLN02861 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468999999999999999999641 1 479999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC-CCeEEEEeCCCCCCCC----CCCCCcCC
Q psy8155 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFSWSPDTDSSS----SPVPRSQA 351 (617)
Q Consensus 277 A~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~----~~~~~~~~ 351 (617)
||+++|+++|||++.++.+++.+++++++++++|++.+..+.+.......+ ....++.+++...... .......+
T Consensus 121 A~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 200 (660)
T PLN02861 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFS 200 (660)
T ss_pred HHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEE
Confidence 999999999999999999999999999999999998776655554444332 2345555543211000 00001123
Q ss_pred cchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC-----CCCCCEEEEcCcchhh
Q psy8155 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-----FRTKDRFYTPLPLYHT 426 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~d~~l~~~p~~~~ 426 (617)
+.++........ ..+...++|+|+|+|||||||.||||++||++++..+.+....++ +.++|++++++|++|.
T Consensus 201 ~~~~~~~~~~~~--~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 278 (660)
T PLN02861 201 WEEFSLMGSLDC--ELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278 (660)
T ss_pred HHHHHHhCcccC--CCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHH
Confidence 444433221111 112346899999999999999999999999999988777665544 4788999999999999
Q ss_pred HHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcC---------------------------
Q psy8155 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST--------------------------- 479 (617)
Q Consensus 427 ~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~--------------------------- 479 (617)
.+.... +.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.|.+.
T Consensus 279 ~~~~~~-~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~ 356 (660)
T PLN02861 279 YDQVIE-TYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNL 356 (660)
T ss_pred HHHHHH-HHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 987554 45899999998874 6899999999999999999999999988641
Q ss_pred ----------CCCCCC-------cc-Cceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe-CCCCCCCHH
Q psy8155 480 ----------PEKPED-------KA-HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL-DINKSLDVS 538 (617)
Q Consensus 480 ----------~~~~~~-------~l-~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~-~~~~~~~~~ 538 (617)
+..... .+ .++|.++ |+++++++ .+|.+.++...++|.||+||++..+. .......
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~-~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~-- 433 (660)
T PLN02861 357 RKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFS-- 433 (660)
T ss_pred hcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH-HHHHHHHcCCCeeEecchhhhhhceeecccccCC--
Confidence 000000 01 4788887 66699886 56888877546999999999864433 1111000
Q ss_pred HHHHHHhhcCCCCCc-----------------CcEEEEeecccCCccchhhhHHHhh----cCCCCCccCCeeEEEeCCC
Q psy8155 539 AVSEGIKKALPSYAR-----------------PLFIRCLREVEMTGTYKLKKLDLQK----EGFDPNVIQDRLYYLSSKG 597 (617)
Q Consensus 539 ~l~~~l~~~Lp~~~~-----------------P~~~~~~~~lP~t~~GK~dr~~L~~----~g~~~~~TGD~lg~~d~d~ 597 (617)
....++..+|...+ +..+.+.+ |....|+.++...++ +|| ++||| +|++|+|
T Consensus 434 -~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrG--p~v~~GY~~~pe~T~~~f~dGw--~~TGD-lg~~d~d- 506 (660)
T PLN02861 434 -MVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRG--NTLFSGYHKRQDLTEEVLIDGW--FHTGD-IGEWQPN- 506 (660)
T ss_pred -CCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcC--CcccccccCCHHHHHhhhhccC--cccCc-eEEECCC-
Confidence 00012222221110 01111111 222345555544443 688 67999 9999998
Q ss_pred ceeeCCHHHHHHHhc-CCcCC
Q psy8155 598 VYEELTPEVYKDLVQ-GNIRL 617 (617)
Q Consensus 598 G~l~i~GR~~d~I~~-~G~~v 617 (617)
|+|+|+||+||+||. +|+||
T Consensus 507 G~l~i~GR~kd~Ik~~~G~~I 527 (660)
T PLN02861 507 GAMKIIDRKKNIFKLSQGEYV 527 (660)
T ss_pred CcEEEEeccccceEcCCCeEE
Confidence 999999999999995 89987
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=455.54 Aligned_cols=398 Identities=17% Similarity=0.123 Sum_probs=286.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEEC----C-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHH
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFE----N-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~----~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA 277 (617)
..|+.++|+++++++|+++|+.+. + ..+||+||+++++++|++|+++|+++|++|+|+++|+++|++++||
T Consensus 44 ~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA 123 (666)
T PLN02614 44 MDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123 (666)
T ss_pred CCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458999999999999999999842 1 2489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhc-CCCeEEEEeCCCCCCCC--C--CCCCcCCc
Q psy8155 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL-GSNVKLFSWSPDTDSSS--S--PVPRSQAL 352 (617)
Q Consensus 278 ~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~--~~~~~~~~ 352 (617)
|+++|+++||++|.++.+++.+++++++++++|++.+..+.+....... +....++.+++...... . .......+
T Consensus 124 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 203 (666)
T PLN02614 124 CNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAW 203 (666)
T ss_pred HHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEH
Confidence 9999999999999999999999999999999999876544433221111 11334555543210000 0 00001234
Q ss_pred chhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh-----CCCCCCEEEEcCcchhhH
Q psy8155 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-----GFRTKDRFYTPLPLYHTA 427 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 427 (617)
++++........ ..+...++|+|+|+|||||||.||||++||+++.+.+.+....+ +++++|++++++|++|.+
T Consensus 204 ~~~~~~~~~~~~-~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~ 282 (666)
T PLN02614 204 DEFLKLGEGKQY-DLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIF 282 (666)
T ss_pred HHHHhhcccCCC-CCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHH
Confidence 444432211111 11234679999999999999999999999999998877665543 578899999999999988
Q ss_pred HHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC-------------------------
Q psy8155 428 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK------------------------- 482 (617)
Q Consensus 428 ~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------- 482 (617)
+... .+.++..|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 283 ~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 360 (666)
T PLN02614 283 DRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMK 360 (666)
T ss_pred HHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 8643 456788999999875 5899999999999999999999999987642100
Q ss_pred ------CCC-------------c-cCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe-CCCCCCCHHH
Q psy8155 483 ------PED-------------K-AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL-DINKSLDVSA 539 (617)
Q Consensus 483 ------~~~-------------~-l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~ 539 (617)
... . .++||.++ |++++++ +++|.+.++.+.++|.||+||+..... .......
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~-~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~--- 436 (666)
T PLN02614 361 KGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASH-VESFLRVVACCHVLQGYGLTESCAGTFVSLPDELD--- 436 (666)
T ss_pred cCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHH-HHHHHHHhcCCCEEeeCchHhhhhheeeeccccCC---
Confidence 000 0 15788887 5668876 578888887557999999999864333 1111100
Q ss_pred HHHHHhhcCCCCCc-----------------CcEEEEeecccCCccchhhhHHHhh----cCCCCCccCCeeEEEeCCCc
Q psy8155 540 VSEGIKKALPSYAR-----------------PLFIRCLREVEMTGTYKLKKLDLQK----EGFDPNVIQDRLYYLSSKGV 598 (617)
Q Consensus 540 l~~~l~~~Lp~~~~-----------------P~~~~~~~~lP~t~~GK~dr~~L~~----~g~~~~~TGD~lg~~d~d~G 598 (617)
....++..+|...+ +..+.+.+ |....|+.++.+.++ +|| ++||| +|++|+| |
T Consensus 437 ~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrG--p~v~~GY~~~pe~T~~~f~dGw--~~TGD-lg~~d~d-G 510 (666)
T PLN02614 437 MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG--KTLFSGYYKREDLTKEVLIDGW--LHTGD-VGEWQPN-G 510 (666)
T ss_pred cCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcC--CcccccccCCHHHhhhhhccCC--cccce-EEEEcCC-C
Confidence 00122333332211 11122111 222245555544443 677 67999 9999998 9
Q ss_pred eeeCCHHHHHHHhc-CCcCC
Q psy8155 599 YEELTPEVYKDLVQ-GNIRL 617 (617)
Q Consensus 599 ~l~i~GR~~d~I~~-~G~~v 617 (617)
+|+|+||+||+||. +|+||
T Consensus 511 ~l~i~gR~kd~ik~~~G~~V 530 (666)
T PLN02614 511 SMKIIDRKKNIFKLSQGEYV 530 (666)
T ss_pred CEEEEEcchhceecCCCeee
Confidence 99999999999995 89997
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=437.71 Aligned_cols=411 Identities=42% Similarity=0.743 Sum_probs=341.1
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
......++.++|.++++++|+++|++++++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus 32 ~~~~~~tl~~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G 111 (600)
T PRK08279 32 TPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLG 111 (600)
T ss_pred CCCCcccHHHHHHHHHHhCCCCcEEEeCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|+++.++.+++.+++++++++++|++.+..+.+.+..........++..++.... ......++.+.....+..
T Consensus 112 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 188 (600)
T PRK08279 112 AVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD---DPEGYEDLAAAAAGAPTT 188 (600)
T ss_pred cEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc---ccccHHHHhhhcccCCcc
Confidence 99999999999999999999999999999998877776665544433333333321100 000111121111111111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcE
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~ 442 (617)
.+.......++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..++...++.+|..|++
T Consensus 189 ~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 268 (600)
T PRK08279 189 NPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGAT 268 (600)
T ss_pred CCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcE
Confidence 11122334678999999999999999999999999999999988889999999999999999999987777788999999
Q ss_pred EEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeeeccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 443 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 443 lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+++.+.+++..+++.++++++|++.++|++++.++...........++|+++|++++++++++|.+.++..+++|.||+|
T Consensus 269 ~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~~g~~l~~~~~~~~~~~~~~~~l~~~YG~t 348 (600)
T PRK08279 269 LALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAAS 348 (600)
T ss_pred EEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEEecCCCCHHHHHHHHHHhCcceeeeeeccc
Confidence 99999999999999999999999999999999998876555445678888889999999999999999876799999999
Q ss_pred cc------------------------------------------------------------------------------
Q psy8155 523 EG------------------------------------------------------------------------------ 524 (617)
Q Consensus 523 E~------------------------------------------------------------------------------ 524 (617)
|+
T Consensus 349 E~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~ 428 (600)
T PRK08279 349 EGNVGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGYTDPEASEKK 428 (600)
T ss_pred ccceeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccccccCCchhhHHH
Confidence 82
Q ss_pred -----------------------------------------------------------------------------ceE
Q psy8155 525 -----------------------------------------------------------------------------MAA 527 (617)
Q Consensus 525 -----------------------------------------------------------------------------~~~ 527 (617)
.++
T Consensus 429 ~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~ 508 (600)
T PRK08279 429 ILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAA 508 (600)
T ss_pred HhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeE
Confidence 111
Q ss_pred Ee-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCCCCCccCCeeEEEeCC-CceeeCCHH
Q psy8155 528 IL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSK-GVYEELTPE 605 (617)
Q Consensus 528 v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~d-~G~l~i~GR 605 (617)
++ .++...+.++++++++++||.||+|..+++++++|+|.+||++|++|+++.+..-+.+|++..+|++ .|+.-++.-
T Consensus 509 vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (600)
T PRK08279 509 IVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGSGGYVPLTAE 588 (600)
T ss_pred EEecCCccCCHHHHHHHHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCccccCCeeEEEecCCCceEecCHH
Confidence 11 2223456678999999999999999999999999999999999999999999776688888999988 888888887
Q ss_pred HHHHHhcCCcC
Q psy8155 606 VYKDLVQGNIR 616 (617)
Q Consensus 606 ~~d~I~~~G~~ 616 (617)
..-.|-.|-+|
T Consensus 589 ~~~~~~~~~~~ 599 (600)
T PRK08279 589 LYAEIAAGKFR 599 (600)
T ss_pred HHHHHhcCccc
Confidence 77777666554
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=428.14 Aligned_cols=382 Identities=20% Similarity=0.197 Sum_probs=292.9
Q ss_pred HHHHHHhh-CCCceEEEECC-----ceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 213 IFREHAVR-SPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 213 ~~~~~a~~-~p~~~Al~~~~-----~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.++++... .+++.|+++.+ +++||+||.+.++++|+.|++ .|+ +||+|+|++|+.++.++++|||+|+||++
T Consensus 14 ~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 34555542 47899999873 679999999999999999986 678 99999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHH------HHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE------ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
+|+.+.++++.+++.+++++++++|+++......+. +.+.+.. +++.+... ..+.+..+..
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~---~iv~~r~~----------~~~~~~~~~~ 159 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS---VVVVPRLG----------LWYDEAVEKA 159 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc---eEEecccc----------ccHHHHhhcc
Confidence 999999999999999999999999998765442221 1111111 33333211 4455555544
Q ss_pred CCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHH-HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA-IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
+...+.. ..+++|+++|+|||||||+||||+++|+++...... ....+.+.++|++.+.+++.|..+..+.++++|.
T Consensus 160 ~~~~~~~--~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~ 237 (528)
T COG0365 160 SEKFEFE--PLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLA 237 (528)
T ss_pred CCCCCcc--ccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHh
Confidence 4333222 368899999999999999999999999977766654 4456788899999999999999998777999999
Q ss_pred cCcEEEEcCC--C-CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcc
Q psy8155 439 FGCCVVIRKK--F-SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIA 513 (617)
Q Consensus 439 ~G~~lvi~~~--~-d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~ 513 (617)
+|+++++.+. + +++.+++.|+++++|.+++.|+.+++|.+.+.....++++||.++ ||+++++.++.+.+.+++
T Consensus 238 ~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~- 316 (528)
T COG0365 238 SGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV- 316 (528)
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHhCC-
Confidence 9999999863 2 499999999999999999999999999998875667899999998 999999999999999996
Q ss_pred cccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcC-------------cEEEEeecccCCccchh-hhHHHhhc
Q psy8155 514 QIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARP-------------LFIRCLREVEMTGTYKL-KKLDLQKE 579 (617)
Q Consensus 514 ~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P-------------~~~~~~~~lP~t~~GK~-dr~~L~~~ 579 (617)
.+.+.||+||++.....+..+... ......+|.|.+- ..+++....|-...|.. |..+..+.
T Consensus 317 ~i~d~~gqTEtg~~~~~~~~~~~~----g~~g~p~pG~~~~vvdd~g~~~~~~~G~Lvi~~~~p~~~~~~w~d~er~~~~ 392 (528)
T COG0365 317 WILDIYGQTETGMGFIAGRPPVKN----GSSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEA 392 (528)
T ss_pred CEeccccccccCccccCCCCCcCC----CCCCCCCCCceeEEECCCCCcCCCCceEEEEeCCCchhhhhhhCCHHHHHHH
Confidence 799999999998444422110000 0112333333210 33444445552222222 11222222
Q ss_pred CCC-CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFD-PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~-~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
-|. ++.||| .+++|+| ||++|+||.||+||+.|+||
T Consensus 393 y~~~~y~tGD-~~~~Ded-Gy~~i~GR~DDvI~vsG~Ri 429 (528)
T COG0365 393 YFGRWYRTGD-WAERDED-GYFWLHGRSDDVIKVSGKRI 429 (528)
T ss_pred HhhceeecCc-eeEEccC-CCEEEEeeccceEeccCeec
Confidence 222 467999 9999998 99999999999999999987
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=447.96 Aligned_cols=401 Identities=14% Similarity=0.103 Sum_probs=291.8
Q ss_pred HHHHHHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 210 IADIFREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 210 l~~~~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
.+++|+++++++|+++|+++. ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 54 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Ga 133 (628)
T TIGR02316 54 CHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGA 133 (628)
T ss_pred HHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 467888888899999999972 46899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhc-CCCeEEEEeCCCCCCCCCCCCCcCCcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALS 353 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 353 (617)
+++|+++.++.+++.+++++++++++|+++.. .+.+....... .....++.++...............+.
T Consensus 134 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (628)
T TIGR02316 134 IHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYA 213 (628)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHH
Confidence 99999999999999999999999999997642 22333332222 223455666532111000000122344
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHH-HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
++........ .......+++++||+|||||||+||||+++|+++.. ........++++++|++++.+|++|+.+..+.
T Consensus 214 ~~~~~~~~~~-~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 292 (628)
T TIGR02316 214 ALRTQHEDAQ-VPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYI 292 (628)
T ss_pred HHhhccccCC-CCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHH
Confidence 4333221111 111224678999999999999999999999999754 44556667889999999999999999887677
Q ss_pred HHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHH
Q psy8155 433 IGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
++.+|+.|+++++.+. .++..+++.|+++++|++..+|++++.|.+.... ...++++||.++ ||++++++.+
T Consensus 293 ~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~ 372 (628)
T TIGR02316 293 VYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAH 372 (628)
T ss_pred HHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHH
Confidence 8999999999999863 5899999999999999999999999999876532 344688999887 8999999999
Q ss_pred HHHHHcCcccccccccccccceEEeC--CCCCCCHHHHHHHHhhcCCCCC---------------cCcEEEEeecccCCc
Q psy8155 505 EFVDRFRIAQIGEFYGATEGMAAILD--INKSLDVSAVSEGIKKALPSYA---------------RPLFIRCLREVEMTG 567 (617)
Q Consensus 505 ~~~~~~~~~~l~n~YG~TE~~~~v~~--~~~~~~~~~l~~~l~~~Lp~~~---------------~P~~~~~~~~lP~t~ 567 (617)
++.+.++. .++|.||+||+...++. ++....... ...+...+|... ....+.+...+|...
T Consensus 373 ~~~~~~~~-~~~~~yG~TE~~~~~~~~~~~~~~~~~~-~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~ 450 (628)
T TIGR02316 373 WITDGLGK-PVIDNYWQTETGWPVLAIMPGLDLKPVK-LGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGC 450 (628)
T ss_pred HHHHHhCC-CEEecccccccCceeecCCCCCCcCCCC-CCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccc
Confidence 99998886 69999999999744431 111100000 001111122110 111222222222111
Q ss_pred -cchhhhH-HHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 568 -TYKLKKL-DLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 568 -~GK~dr~-~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|..+.. ... .++| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~--~~TGD-~g~~d~d-G~l~i~GR~dd~ik~~G~rv 505 (628)
T TIGR02316 451 LSTVWGDDARFLKTYWSHFKRPL--YSSFD-WGIRDED-GYTFILGRTDDVINVAGHRL 505 (628)
T ss_pred cccccCChHHHHHhhhhcCCCCE--EECCc-eEEEcCC-CcEEEEEcCcceEEeCCEEe
Confidence 1211111 111 2345 78999 9999998 99999999999999999987
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=443.91 Aligned_cols=402 Identities=20% Similarity=0.206 Sum_probs=301.4
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEE--------CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMF--------ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~--------~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~l 276 (617)
..+.|+.++|.+.++++|+++|+++ ..+++||+||.++++++|++|++.|+++|++|+++++|++++++++|
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3467899999999999999999986 35789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccch-----HHHHHHHHHhcCCCeEEEEeCCCCCCCCC-------
Q psy8155 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQEISTSLGSNVKLFSWSPDTDSSSS------- 344 (617)
Q Consensus 277 A~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------- 344 (617)
||+++| +++|+||.++.+++.+++++++++++|++... .+.+.......+....++.++........
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 999999 57999999999999999999999999997643 33444444444444455555432110000
Q ss_pred ----CCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEc
Q psy8155 345 ----PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP 420 (617)
Q Consensus 345 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 420 (617)
.......+.+.+...+...........++++++|+|||||||.||||+++|+++.+........+++.++|++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 0011234444444332222212223467999999999999999999999999999988888888889999999999
Q ss_pred CcchhhHHHHHHHHHHhHcCcEEEEcCCC---C---HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee
Q psy8155 421 LPLYHTAGGAMCIGQALIFGCCVVIRKKF---S---ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494 (617)
Q Consensus 421 ~p~~~~~~~~~~~~~~L~~G~~lvi~~~~---d---~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~ 494 (617)
+|++|..++...++.+|..|+++++.++. + ...+++.|+++++|++.++|+++..|++.+.. ..++++||.++
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~v~ 339 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRYAL 339 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEEEE
Confidence 99999998877889999999999998631 2 36789999999999999999999999987543 34678999887
Q ss_pred --ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCc-------------------
Q psy8155 495 --GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYAR------------------- 553 (617)
Q Consensus 495 --Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~------------------- 553 (617)
|+++++++.++|.+.++. +++|.||+||+.+.+........ .-...++..+|...+
T Consensus 340 ~gg~~l~~~l~~~~~~~~g~-~l~~~YG~TE~~~~~~~~~~~~~--~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~ 416 (632)
T PRK07529 340 CGAAPLPVEVFRRFEAATGV-RIVEGYGLTEATCVSSVNPPDGE--RRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE 416 (632)
T ss_pred EcCCCCCHHHHHHHHHHhCC-cEeeeecccccCcccccCCcccc--ccCCCcccccCCceEEEEEcCCCCcccccCCCCC
Confidence 788999999999999876 79999999998655442111000 000011222222110
Q ss_pred CcEEEEeecccCCccchhhh----HHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 554 PLFIRCLREVEMTGTYKLKK----LDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 554 P~~~~~~~~lP~t~~GK~dr----~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...+.+.. |....|+.+. .....+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 417 ~Gel~v~g--p~v~~GY~~~~~~~~~~~~~gw--~~TGD-lg~~d~d-G~l~i~GR~~d~i~~~G~~i 478 (632)
T PRK07529 417 VGVLCIAG--PNVFSGYLEAAHNKGLWLEDGW--LNTGD-LGRIDAD-GYFWLTGRAKDLIIRGGHNI 478 (632)
T ss_pred ceEEEEEC--CCccccccCCccccccccCCCc--eEcCc-EEEEcCC-ceEEEEecccCEEEeCCEEE
Confidence 01111111 1112233322 12224567 77999 9999997 99999999999999999986
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=455.79 Aligned_cols=425 Identities=15% Similarity=0.085 Sum_probs=303.4
Q ss_pred ccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEEC-------------------
Q psy8155 170 GYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFE------------------- 230 (617)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~------------------- 230 (617)
.....+..++.+++++..+++..+...| ....|+.++|.++++++|+++|+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~ 110 (700)
T PTZ00216 38 GTETENASAIYRIAGVTDEEHERLRNEW-------YYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERT 110 (700)
T ss_pred CCCCCCCCCcccCcccccchhccccccc-------CCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCcccc
Confidence 4455567777787777777666554432 23568999999999999999999873
Q ss_pred --------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHH
Q psy8155 231 --------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302 (617)
Q Consensus 231 --------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~ 302 (617)
.+++||+||+++++++|++|.++|+++|++|+|+++|+++|+++++||+++|++++|+++.++.+++.++++
T Consensus 111 ~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~ 190 (700)
T PTZ00216 111 MEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALR 190 (700)
T ss_pred ccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEEccchHHHHHHHHHhc-CCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC--CCCCCCCCCCCCCCeEEEE
Q psy8155 303 IAGVSAFIYGAELTDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP--TSPPSLSYRVGVQDKLIYI 379 (617)
Q Consensus 303 ~~~~~~vl~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~ii 379 (617)
+++++++|++.+....+....... .....++++++.............++++++.... ...........+++++||+
T Consensus 191 ~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii 270 (700)
T PTZ00216 191 ETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIM 270 (700)
T ss_pred ccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEE
Confidence 999999999877655443333221 1234566665432110011111234555544321 1111112234689999999
Q ss_pred EccCCCCCCceEEechHHHHHHHHHHHHHh-----CCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHH
Q psy8155 380 YTSGTTGLPKAAVISNHRYYFLGGAIAYQI-----GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNY 454 (617)
Q Consensus 380 ~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l 454 (617)
|||||||.||||++||+|+++.+.+....+ .++++|++++++|++|.++... ....+..|+++++. ++..+
T Consensus 271 yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l 346 (700)
T PTZ00216 271 YTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG---SPRTL 346 (700)
T ss_pred EeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHh
Confidence 999999999999999999999887766544 2478899999999999888644 34567888887763 45555
Q ss_pred HH-------HHHHcCCcEEeecHHHHHHHHcCCCC---------------------------CC--------------Cc
Q psy8155 455 FS-------DVCKYKCTVGQYIGEMCRYLLSTPEK---------------------------PE--------------DK 486 (617)
Q Consensus 455 ~~-------~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------------~~--------------~~ 486 (617)
.+ .++++++|++..+|.+++.+.+.... .. ..
T Consensus 347 ~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 426 (700)
T PTZ00216 347 TDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVL 426 (700)
T ss_pred hhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHh
Confidence 54 68999999999999999887642100 00 00
Q ss_pred cCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCC-----------
Q psy8155 487 AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYA----------- 552 (617)
Q Consensus 487 l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~----------- 552 (617)
.+++|.++ |+++++++.+.+...++ .++|.||+||+++.... ....... ..++..+|...
T Consensus 427 g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~TEt~~~~~~~~~~~~~~----~svG~p~~g~evkI~d~~~~~~ 500 (700)
T PTZ00216 427 GGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGLTETVCCGGIQRTGDLEP----NAVGQLLKGVEMKLLDTEEYKH 500 (700)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCcccccccccccCCCCCCC----CCcCCcCCCeEEEEeechhhcc
Confidence 15788877 78899999877766665 69999999999654331 1110000 01122222111
Q ss_pred ----cC-cEEEEeecccCCccchhhhHHHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHh-cCCcCC
Q psy8155 553 ----RP-LFIRCLREVEMTGTYKLKKLDLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLV-QGNIRL 617 (617)
Q Consensus 553 ----~P-~~~~~~~~lP~t~~GK~dr~~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~-~~G~~v 617 (617)
.| ..+.+.+ |....|+.++...+ ++|| ++||| +|++|+| |+|+|+||+||+|| ++|+||
T Consensus 501 ~~~~~~~GEL~vrG--~~v~~GY~~~pe~T~~~f~~dGw--~~TGD-ig~~d~d-G~l~i~GR~kd~ik~~~G~~I 570 (700)
T PTZ00216 501 TDTPEPRGEILLRG--PFLFKGYYKQEELTREVLDEDGW--FHTGD-VGSIAAN-GTLRIIGRVKALAKNCLGEYI 570 (700)
T ss_pred CCCCCCCceEEEcC--CcccchhcCChhHhhhhccccCC--eeccc-eEEEcCC-CcEEEEEehHhheecCCCcee
Confidence 01 1122111 22334666555544 4677 77999 9999998 99999999999999 899987
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=443.27 Aligned_cols=397 Identities=16% Similarity=0.197 Sum_probs=289.4
Q ss_pred HHHHHHHHh-hCCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 211 ADIFREHAV-RSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 211 ~~~~~~~a~-~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
..+++++++ .+|+++|+++. .+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567777776 48999999874 36899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchH---------HHHHHHHHhcC----CCeEEEEeCCCCC---CCCC-CC
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELT---------DAVQEISTSLG----SNVKLFSWSPDTD---SSSS-PV 346 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~---------~~~~~~~~~~~----~~~~~i~~~~~~~---~~~~-~~ 346 (617)
+++|+++.++.+++.+++++++++++|++.... +.+........ ....++..+.... .... ..
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 999999999999999999999999999987642 22222222110 1111222221110 0000 00
Q ss_pred CCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHH-HHHHHHHHhCCCCCCEEEEcCcchh
Q psy8155 347 PRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYH 425 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~ 425 (617)
.....++++....+. ........++|++||+|||||||+||||+++|++++. ........++++++|++++.+|++|
T Consensus 251 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 328 (666)
T PLN02654 251 GRDVWWQDVVPNYPT--KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGW 328 (666)
T ss_pred CCcccHHHHhhcCCC--CCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchh
Confidence 001123333322111 1111234679999999999999999999999999864 3455667789999999999999999
Q ss_pred hHHHHHHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccC
Q psy8155 426 TAGGAMCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNG 497 (617)
Q Consensus 426 ~~~~~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~ 497 (617)
..+..+.++++|+.|+++++.++ .++..+++.|++++||++..+|++++.|++.... ...++++||.++ ||+
T Consensus 329 ~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~ 408 (666)
T PLN02654 329 ITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEP 408 (666)
T ss_pred hhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCC
Confidence 98877778899999999999863 5899999999999999999999999999987542 234678999887 999
Q ss_pred CCHHHHHHHHHHcCc--ccccccccccccceEEeCCCC---CCCHHHHHHHHhhcCCCCC--------------cCcEEE
Q psy8155 498 LRPQIWSEFVDRFRI--AQIGEFYGATEGMAAILDINK---SLDVSAVSEGIKKALPSYA--------------RPLFIR 558 (617)
Q Consensus 498 l~~~~~~~~~~~~~~--~~l~n~YG~TE~~~~v~~~~~---~~~~~~l~~~l~~~Lp~~~--------------~P~~~~ 558 (617)
+++++++++.+.+|. ..+.+.||+||+...++.+.. ..... .+...+|... ....+.
T Consensus 409 l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~g----s~G~p~~g~~v~i~d~~g~~~~~~~~Gel~ 484 (666)
T PLN02654 409 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG----SATFPFFGVQPVIVDEKGKEIEGECSGYLC 484 (666)
T ss_pred CCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCC----ccCCCCCCceEEEECCCCCCCCCCCceEEE
Confidence 999999999999983 369999999998765542211 00000 1112222111 112233
Q ss_pred EeecccCCccchhhhHH-----H-h-hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 559 CLREVEMTGTYKLKKLD-----L-Q-KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 559 ~~~~lP~t~~GK~dr~~-----L-~-~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+....|....|..+... . . .+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 485 v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~--~~TGD-~~~~d~d-G~l~i~GR~dd~I~~~G~ri 546 (666)
T PLN02654 485 VKKSWPGAFRTLYGDHERYETTYFKPFAGY--YFSGD-GCSRDKD-GYYWLTGRVDDVINVSGHRI 546 (666)
T ss_pred EcCCCchhhhhhcCChHHHHHhhhhcCCCE--EEeCc-eEEECCC-CcEEEeeeccCeEEeCCEEE
Confidence 33222333333332211 1 1 2577 77999 9999998 99999999999999999986
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=442.11 Aligned_cols=398 Identities=18% Similarity=0.191 Sum_probs=297.6
Q ss_pred HHHHHHHHHhhCCCceEEEECC------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 210 IADIFREHAVRSPNKVIFMFEN------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 210 l~~~~~~~a~~~p~~~Al~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
....++++++++|+++|+++.+ +.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 59 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 59 SYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 4667778888999999998753 4899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcC-CCeEEEEeCCCCCCCCCCCCCcCCcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLG-SNVKLFSWSPDTDSSSSPVPRSQALS 353 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 353 (617)
+++|++|.++.+++.+++++++++++|+++.. .+.+.+.....+ ....++.++...............+.
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH 218 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHH
Confidence 99999999999999999999999999998753 334444444444 23345555432211000000122344
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
+++....... ......+++++||+|||||||+||||+++|+++..... .....+++.++|++++.+|++|..+..+.
T Consensus 219 ~~~~~~~~~~--~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 296 (625)
T TIGR02188 219 DLMAKASAYC--EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYI 296 (625)
T ss_pred HHHhhcCCCC--CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHH
Confidence 4433322111 12245778999999999999999999999999865443 44556788999999999999998886677
Q ss_pred HHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHH
Q psy8155 433 IGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
++.+|..|+++++.+. .++..+++.|+++++|++.++|++++.|.+.... ...++++||.+. |+++++++++
T Consensus 297 ~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~ 376 (625)
T TIGR02188 297 VYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWM 376 (625)
T ss_pred HHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHH
Confidence 8899999999999763 4899999999999999999999999999876543 234578999887 8999999999
Q ss_pred HHHHHcCc--ccccccccccccceEEeCCCC---CCCHHHHHHHHhhcCCCC---------------CcCcEEEEeeccc
Q psy8155 505 EFVDRFRI--AQIGEFYGATEGMAAILDINK---SLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVE 564 (617)
Q Consensus 505 ~~~~~~~~--~~l~n~YG~TE~~~~v~~~~~---~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP 564 (617)
++.+.++. +.++|.||+||+...++.... ..... .+...+|.. .....+++...+|
T Consensus 377 ~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~----~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p 452 (625)
T TIGR02188 377 WYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPG----SATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWP 452 (625)
T ss_pred HHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCC----cccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCC
Confidence 99998863 479999999999655442110 00000 111122211 1112233434344
Q ss_pred CCccchhhhHHH-------hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 565 MTGTYKLKKLDL-------QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 565 ~t~~GK~dr~~L-------~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|+.+.... ..+|| ++||| +|++|+| |+++|+||+||+||++|+||
T Consensus 453 ~~~~gy~~~~~~~~~~~~~~~~g~--~~TGD-l~~~d~d-G~l~i~GR~dd~i~~~G~ri 508 (625)
T TIGR02188 453 GMLRTIYGDHERFVDTYFSPFPGY--YFTGD-GARRDKD-GYIWITGRVDDVINVSGHRL 508 (625)
T ss_pred cccccccCChHHHHHHHhccCCCE--EECCc-eEEEcCC-CcEEEEecccCEEEeCCEEE
Confidence 444555433221 13566 77999 9999998 99999999999999999986
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=441.05 Aligned_cols=397 Identities=18% Similarity=0.193 Sum_probs=295.0
Q ss_pred HHHHHHHHhhCCCceEEEECC------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 211 ADIFREHAVRSPNKVIFMFEN------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 211 ~~~~~~~a~~~p~~~Al~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.+.|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 567888889999999999743 47999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
++|++|.++.+++.+++++++++++|+++.. .+.+......++....++.++...............+.++
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL 229 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence 9999999999999999999999999997653 2333444333443344555543221100000012223444
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
........ ......+++++||+|||||||+||||+++|++++.... .....+++.++|++++.+|++|..+..+.++
T Consensus 230 ~~~~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 307 (637)
T PRK00174 230 VAGASDEC--EPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVY 307 (637)
T ss_pred HhhcCCCC--CccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHH
Confidence 33221111 12235678999999999999999999999999875543 4455678899999999999999988777889
Q ss_pred HHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHH
Q psy8155 435 QALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEF 506 (617)
Q Consensus 435 ~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~ 506 (617)
.+|..|+++++.+. .++..+++.|+++++|++..+|++++.|++.... ...++++||.++ ||++++++.+++
T Consensus 308 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~ 387 (637)
T PRK00174 308 GPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWY 387 (637)
T ss_pred HHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHH
Confidence 99999999999753 5899999999999999999999999999876542 234578999887 899999999999
Q ss_pred HHHcCc--ccccccccccccceEEeCC--CC-CCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCc
Q psy8155 507 VDRFRI--AQIGEFYGATEGMAAILDI--NK-SLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTG 567 (617)
Q Consensus 507 ~~~~~~--~~l~n~YG~TE~~~~v~~~--~~-~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~ 567 (617)
.+.++. +.++|.||+||+...+... +. .... ..+...+|.. ..+..+.+.+.+|...
T Consensus 388 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~----~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~ 463 (637)
T PRK00174 388 YKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKP----GSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMM 463 (637)
T ss_pred HHHhCCCCCceEecccccccCCceEecCCCCCCcCC----CcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCccc
Confidence 998863 4799999999996554421 10 0000 0112222211 1112233333223333
Q ss_pred cchhhhHHH-------hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 568 TYKLKKLDL-------QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 568 ~GK~dr~~L-------~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|+.+.... ..+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 464 ~gy~~~~~~~~~~~~~~~~g~--~~TGD-l~~~d~d-G~l~~~GR~dd~ik~~G~~v 516 (637)
T PRK00174 464 RTIYGDHERFVKTYFSTFKGM--YFTGD-GARRDED-GYYWITGRVDDVLNVSGHRL 516 (637)
T ss_pred ccccCCHHHHHHhhhcCCCCE--EECCc-eEEEcCC-CcEEEEEecccEEEeCCEEE
Confidence 444432221 13566 78999 9999997 99999999999999999986
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=429.78 Aligned_cols=387 Identities=20% Similarity=0.234 Sum_probs=298.3
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|.++++++|+++|+++.++.+||+||+++++++|++|.+.|+++|++|+++++|+++++++++|++++|++++
T Consensus 42 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 121 (537)
T PRK13382 42 GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADIL 121 (537)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEeCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|++|.++.+++.+++++++++++|++.+....+.......+....++.+++... ...++.+........
T Consensus 122 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--- 190 (537)
T PRK13382 122 LLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDH--------DLTVEVLIAAHAGQR--- 190 (537)
T ss_pred ecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcc--------cccHHHHhhccCcCC---
Confidence 999999999999999999999999998877666554433333333333322110 112222222211111
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
+...+++.++++|||||||+||||+++|+++.....+....+.+.++++++...|++|..++ ..++.++..|+++++.
T Consensus 191 -~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~ 268 (537)
T PRK13382 191 -PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTR 268 (537)
T ss_pred -CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEEC
Confidence 12356889999999999999999999999998888888888889999999999999999886 6788999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+.++++.+++.|+++++|++..+|++++.|++.... ...+++++|.++ |++++++++++|.+.++. .++|.||+|
T Consensus 269 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~i~~~YG~T 347 (537)
T PRK13382 269 RRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGD-VIYNNYNAT 347 (537)
T ss_pred CCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCC-cEEeccccc
Confidence 899999999999999999999999999999876432 223456888776 889999999999999987 699999999
Q ss_pred ccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhh-hHHHhhcCCCCCc
Q psy8155 523 EGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLK-KLDLQKEGFDPNV 585 (617)
Q Consensus 523 E~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~d-r~~L~~~g~~~~~ 585 (617)
|+............. . ...++..+|. ..+.+++. + |....|+.. ......+|| ++
T Consensus 348 E~~~~~~~~~~~~~~-~-~~~vG~p~~~----~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~--~~ 419 (537)
T PRK13382 348 EAGMIATATPADLRA-A-PDTAGRPAEG----TEIRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGF--MA 419 (537)
T ss_pred ccCcceecChhHhcc-C-CCCccccCcC----cEEEEECCCCCCCCCCCeeEEEEEcCCcccCccccchhhccCCC--Ee
Confidence 986544421110000 0 0001111111 11222211 1 111122221 011122577 77
Q ss_pred cCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 586 IQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 586 TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
||| ++++|+| |+++|+||+||+||++|+||
T Consensus 420 TGD-l~~~~~~-g~l~~~GR~dd~ik~~G~~v 449 (537)
T PRK13382 420 SGD-VGYLDEN-GRLFVVGRDDEMIVSGGENV 449 (537)
T ss_pred eCc-eEEEeCC-CcEEEeccccceeEECCEEE
Confidence 999 9999998 99999999999999999986
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=431.33 Aligned_cols=392 Identities=19% Similarity=0.222 Sum_probs=305.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECC------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFEN------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
..++.++|++.++.+|+++|+++.+ +.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||+++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~ 102 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSR 102 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence 4689999999999999999999875 8999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccch-----HHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
+|++++|++|.++.+++.+++++++++++++++++ .+.+.++....+....++.++... ..++.++
T Consensus 103 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 173 (547)
T PRK13295 103 IGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG---------ADSFEAL 173 (547)
T ss_pred cCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC---------ccCHHHH
Confidence 99999999999999999999999999999998764 233333333344334445444321 1122222
Q ss_pred hccC-----CCC-CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHH
Q psy8155 356 LSEV-----PTS-PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 356 ~~~~-----~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 429 (617)
.... ... .........++++++|+|||||||.||||+++|+++...+......+++.+++++++.+|++|..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~ 253 (547)
T PRK13295 174 LITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGF 253 (547)
T ss_pred hhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhH
Confidence 2111 000 0111123467899999999999999999999999999988888888999999999999999999988
Q ss_pred HHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHH
Q psy8155 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFV 507 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~ 507 (617)
++.++.+|..|+++++.+.+++..+++.++++++|++..+|+++..|..........+++||.++ |+++++++.++|.
T Consensus 254 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~ 333 (547)
T PRK13295 254 MYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERAR 333 (547)
T ss_pred HHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999887665566788999887 8889999999999
Q ss_pred HHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchh
Q psy8155 508 DRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKL 571 (617)
Q Consensus 508 ~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~ 571 (617)
+.++. .++|.||+||+............ ......+...+|.. .+.++++ + |....|+.
T Consensus 334 ~~~~~-~~~~~YG~TE~~~~~~~~~~~~~-~~~~~~~G~~~~~~----~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~ 407 (547)
T PRK13295 334 AALGA-KIVSAWGMTENGAVTLTKLDDPD-ERASTTDGCPLPGV----EVRVVDADGAPLPAGQIGRLQVRGCSNFGGYL 407 (547)
T ss_pred HHhCC-CeEEeccCCCCCCeeeccCCCcc-hhccCccccccCCc----EEEEECCCCCCCCCCCCCeEEEEcCccccccc
Confidence 99875 79999999998654432111000 00000111111111 1222211 1 22234444
Q ss_pred hhHHHh---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++.... .+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 408 ~~~~~t~~~~~g~--~~TGD-~~~~~~~-g~l~~~gR~~~~i~~~G~~v 452 (547)
T PRK13295 408 KRPQLNGTDADGW--FDTGD-LARIDAD-GYIRISGRSKDVIIRGGENI 452 (547)
T ss_pred CCccccccCCCCC--eecce-EEEEcCC-ceEEEEeccCCeEEECCEEE
Confidence 443322 4677 78999 9999997 99999999999999999986
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=454.38 Aligned_cols=426 Identities=20% Similarity=0.290 Sum_probs=308.8
Q ss_pred ccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHH
Q psy8155 170 GYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 249 (617)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~ 249 (617)
.++..+.+.+..+.+++..++.++.+ ++.... ....++.++|+++++++|+++|+++.++.+||+||+++++++|+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~sl~~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~ra~rlA~~ 488 (994)
T PRK07868 412 DAAVAANRSVRTLAVETARTLPRLAR-LGQIND--HTRISLGRIIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRG 488 (994)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhhHHH-hhhcCC--CCCccHHHHHHHHHHHCCCCeEEEeCCceeeHHHHHHHHHHHHHH
Confidence 34566788889999999999998844 344332 667899999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCC
Q psy8155 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329 (617)
Q Consensus 250 L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~ 329 (617)
|++.|+++|++|+|+++|+++++++++||+++|++++|+||. +++.+++++++++++|++.+..+.+... .
T Consensus 489 L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~ 559 (994)
T PRK07868 489 LIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------P 559 (994)
T ss_pred HHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------C
Confidence 999999999999999999999999999999999999999984 6899999999999999987766544321 2
Q ss_pred eEEEEeCCCCCCCCCC--CCCcCCcchhhccCCCCCCC-CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH
Q psy8155 330 VKLFSWSPDTDSSSSP--VPRSQALSPLLSEVPTSPPS-LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA 406 (617)
Q Consensus 330 ~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~ 406 (617)
.++++++......... ......+++........+.. ......++++|||+|| ||||.|||+.++|.+.........
T Consensus 560 ~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~ 638 (994)
T PRK07868 560 GRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTA 638 (994)
T ss_pred ceEEEecCCccccccCCcchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhh
Confidence 4455554321100000 00011111111100000000 0012236899999999 578888888888877655555556
Q ss_pred HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCc
Q psy8155 407 YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486 (617)
Q Consensus 407 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~ 486 (617)
..++++++|++++.+|++|+.++...++.++..|+++++.++++++.+++.|++++||++.++|++++.|++.......+
T Consensus 639 ~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~ 718 (994)
T PRK07868 639 SAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHG 718 (994)
T ss_pred hhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCC
Confidence 67789999999999999999997544555666666677777899999999999999999999999999999875544456
Q ss_pred cCceeeeeccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCC-c------C--cEE
Q psy8155 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA-R------P--LFI 557 (617)
Q Consensus 487 l~~lr~v~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~-~------P--~~~ 557 (617)
+++||.++|++++++++++|.+.++...++|.||+||+.+.+..... ... ..+++.+|... + | ..+
T Consensus 719 ~~slr~~~g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~-~~~----~svG~p~pg~~~v~i~~~d~~~g~l 793 (994)
T PRK07868 719 NHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANVSG-AKI----GSKGRPLPGAGRVELAAYDPEHDLI 793 (994)
T ss_pred CCceEEEecCCCCHHHHHHHHHHhCchheeeeeecccccccccccCC-CCC----cccCCccCCCCceeEEEecCcCCce
Confidence 78999888888999999999999986689999999998654331110 000 11333344321 0 0 000
Q ss_pred EEe-----ecccCCccchh--------------hhHHHh-hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 558 RCL-----REVEMTGTYKL--------------KKLDLQ-KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 558 ~~~-----~~lP~t~~GK~--------------dr~~L~-~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++- +..|.+..|.+ .+..+. .+|| ++||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 794 i~d~~G~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw--~~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~I 869 (994)
T PRK07868 794 LEDDRGFVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTW--ISTEY-LFRRDDD-GDYWLVDRRGSVIRTARGPV 869 (994)
T ss_pred eecCCceEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEE--Eeccc-eEEEcCC-CCEEEeccCCCEEEeCCceE
Confidence 000 01111111111 111121 3677 77999 9999998 99999999999999999886
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=446.85 Aligned_cols=370 Identities=19% Similarity=0.210 Sum_probs=287.3
Q ss_pred CCHHHHHHHHHhh--CCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 208 LTIADIFREHAVR--SPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 208 ~tl~~~~~~~a~~--~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.++.++|.+++.+ +|+++|+++. +.+||+||+++++++|++|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~-~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~ 82 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA-DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMA 82 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec-CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 3788999999886 7999999875 489999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|+||.++.+++.+++++++++++|++....+.+... .++.. ...........+.
T Consensus 83 vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~~~-----------------~~~~~~~~~~~~~ 137 (705)
T PRK06060 83 FLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVAEA-----------------AELMSEAARVAPG 137 (705)
T ss_pred EecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccchh-----------------hhhhhhccccCCC
Confidence 9999999999999999999999999987654432210 00000 0001100000011
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH-HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
......++++|||+|||||||+||||+++|+++.+.+.++. ..+++.++|++++..|++|..++...++.+|..|++++
T Consensus 138 ~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v 217 (705)
T PRK06060 138 GYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAV 217 (705)
T ss_pred CCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEE
Confidence 11234678999999999999999999999999998877664 46788999999999999999887677889999999999
Q ss_pred EcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccc
Q psy8155 445 IRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGA 521 (617)
Q Consensus 445 i~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 521 (617)
+.+ ..++..+...++++++|+++++|+++..+++... ...+++||.++ ||++++++.++|.+.++..+++|.||+
T Consensus 218 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~ 295 (705)
T PRK06060 218 INSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGS 295 (705)
T ss_pred EeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeec
Confidence 987 4789999999999999999999999999987543 23567899887 899999999999999976689999999
Q ss_pred cccceEEeC-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHH--hhcCCC
Q psy8155 522 TEGMAAILD-INKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDL--QKEGFD 582 (617)
Q Consensus 522 TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L--~~~g~~ 582 (617)
||+...+.. ....... ..+...+|.. .+.++++ + |....|+.++... ..+||
T Consensus 296 tE~~~~~~~~~~~~~~~----~~iG~p~~~~----~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~- 366 (705)
T PRK06060 296 TEVGQTFVSNRVDEWRL----GTLGRVLPPY----EIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGW- 366 (705)
T ss_pred cccCceEEeccCCCCCc----CcccccCCCc----EEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccccCCCc-
Confidence 999654431 1111000 0112222221 2222221 1 2222445544332 24577
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+||| +|++|+| |+++|+||.||+||++|+||
T Consensus 367 -~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 398 (705)
T PRK06060 367 -LDTRD-RVCIDSD-GWVTYRCRADDTEVIGGVNV 398 (705)
T ss_pred -EECCe-eEEECCC-ceEEEecccCceEEECCEEE
Confidence 78999 9999997 99999999999999999986
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=427.18 Aligned_cols=392 Identities=19% Similarity=0.267 Sum_probs=303.9
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+...++.+++.++++++|+++|+++. ++++||.||.++++++|++|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G 99 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRG 99 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 44568999999999999999999986 5789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|+||.++.+++..++++++++++|++....+.+...... ....++.++..... ...+.++.......
T Consensus 100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~ 170 (537)
T PLN02246 100 AVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGVTVVTIDDPPEG-------CLHFSELTQADENE 170 (537)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCceEEEeCCCCCC-------ceeHHHHhcCCCCC
Confidence 9999999999999999999999999999998877766554322 22455555532211 22233332221111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
.+ .....+++++|++|||||||.||||+++|+++.+.+.+... .+++.++|+++..+|++|..++...++.++.
T Consensus 171 ~~--~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~ 248 (537)
T PLN02246 171 LP--EVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR 248 (537)
T ss_pred CC--CCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence 11 12346889999999999999999999999999887765543 4678999999999999999887666788999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.++ |+++++++.+.|.+.++...++
T Consensus 249 ~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 328 (537)
T PLN02246 249 VGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLG 328 (537)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999887665555678899887 8889999999999999776899
Q ss_pred ccccccccceEEeCC----CCCCCHHHHHHHHhhcCCCCCcCcEEEEee-----ccc------------CCccchhhhH-
Q psy8155 517 EFYGATEGMAAILDI----NKSLDVSAVSEGIKKALPSYARPLFIRCLR-----EVE------------MTGTYKLKKL- 574 (617)
Q Consensus 517 n~YG~TE~~~~v~~~----~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-----~lP------------~t~~GK~dr~- 574 (617)
+.||+||+...+... ....... ...++..+|.+ .+.+++ .+| ....|+.+..
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~--~~~~G~~~~~~----~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~ 402 (537)
T PLN02246 329 QGYGMTEAGPVLAMCLAFAKEPFPVK--SGSCGTVVRNA----ELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPE 402 (537)
T ss_pred ccccccccCcccccccccCCCCcccc--CCccccccCCc----EEEEecCCCCCcCCCCCceEEEEECCchhccccCCch
Confidence 999999986443211 0000000 00111112111 122221 012 2223333322
Q ss_pred ----HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 ----DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ----~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+.++|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 403 ~~~~~~~~~~~--~~TGD-~~~~~~~-g~l~~~GR~dd~i~~~G~~i 445 (537)
T PLN02246 403 ATANTIDKDGW--LHTGD-IGYIDDD-DELFIVDRLKELIKYKGFQV 445 (537)
T ss_pred hhhhcccCCCC--eeecc-eEEEeCC-CeEEEEecccceEEECCEEE
Confidence 2335677 77999 9999997 99999999999999999986
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=380.74 Aligned_cols=392 Identities=18% Similarity=0.223 Sum_probs=323.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.+.++.+.+.++|+++||++|++++++.|||+||+++++++|..|+++|+++||+|.+.++|..+++++++|.+|+|++.
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P 105 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP 105 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccc-----hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAE-----LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
|.--|++...++.+..+.+.++++|.+.. ..+...+...+.+....+++.++.+.. ...+..+....
T Consensus 106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-------~~~~~~~~~~a- 177 (542)
T COG1021 106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-------SVLEAALCHPA- 177 (542)
T ss_pred hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-------chhhhhhhCcc-
Confidence 99999999999999999999999998764 345666677777776666666544321 11122222111
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHH-HHHHHHhHc
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA-MCIGQALIF 439 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~~L~~ 439 (617)
......++.+++++||...+.||||.||-+..+|......+..-.+..++++.+++++.+|..|.+.+. -..++.+++
T Consensus 178 -~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a 256 (542)
T COG1021 178 -GLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256 (542)
T ss_pred -ccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeee
Confidence 112223455788999999999999999999999999988888888999999999999999999986532 357789999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 440 G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
||++|+.+..+|+....+|++|+||+..++|.+...++++.+....+++|||++- |..+++++.+++...+++ ++.+
T Consensus 257 gG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC-~LQQ 335 (542)
T COG1021 257 GGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGC-QLQQ 335 (542)
T ss_pred ccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhCc-hHHH
Confidence 9999999999999999999999999999999999999999988888999999886 566999999999999998 8999
Q ss_pred cccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCc-EEEEeec----------------ccCCccchh-----hhHH
Q psy8155 518 FYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL-FIRCLRE----------------VEMTGTYKL-----KKLD 575 (617)
Q Consensus 518 ~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~-~~~~~~~----------------lP~t~~GK~-----dr~~ 575 (617)
.+||.|....+..-+++ .++..+- =..-|.|. .+.++|+ =|-|-+|+. +-++
T Consensus 336 VFGMAEGLvnyTRLDDp---~E~i~~T---QGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~a 409 (542)
T COG1021 336 VFGMAEGLVNYTRLDDP---PEIIIHT---QGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARA 409 (542)
T ss_pred HhhhhhhhhcccccCCc---hHheeec---CCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhc
Confidence 99999998777733322 1111111 11112222 3444433 255666664 5678
Q ss_pred HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..++|| |+||| +.++|+| |||.+.||.||||++|||||
T Consensus 410 F~a~GF--YrsGD-~V~~~~d-Gyl~V~GR~KDQINRgGEKI 447 (542)
T COG1021 410 FDADGF--YRSGD-LVRRDPD-GYLVVEGRVKDQINRGGEKI 447 (542)
T ss_pred cCcCCc--eecCc-eeEecCC-ceEEEEeeehhhhccccchh
Confidence 899999 77999 9999998 99999999999999999997
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=438.30 Aligned_cols=400 Identities=16% Similarity=0.136 Sum_probs=284.4
Q ss_pred HHHHHHHHHhh--CCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 210 IADIFREHAVR--SPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 210 l~~~~~~~a~~--~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
..+++++++.. +|+++|+++. .+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++
T Consensus 61 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 61 CYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 46677777754 7999999873 357999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccc---------hHHHHHHHHHhcC-CCeEEEEeCCCCC---CC------
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAE---------LTDAVQEISTSLG-SNVKLFSWSPDTD---SS------ 342 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~---------~~~~~~~~~~~~~-~~~~~i~~~~~~~---~~------ 342 (617)
|++++|+++.++.+++.+++++++++++|+++. +.+.+.+...... ...+++.+..... ..
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 220 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET 220 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence 999999999999999999999999999999752 2333333332111 1123443321110 00
Q ss_pred CCCCCCcCCcchhhccCC---CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHH-HHHHHHHHHHHhCCCCCCEEE
Q psy8155 343 SSPVPRSQALSPLLSEVP---TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR-YYFLGGAIAYQIGFRTKDRFY 418 (617)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l 418 (617)
....+....+.+++.... ...........+++++||+|||||||+||||+++|++ +.+........+....+++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~ 300 (647)
T PTZ00237 221 IPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVF 300 (647)
T ss_pred cCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEE
Confidence 000111233444433210 0111112245779999999999999999999999998 554444445556778889999
Q ss_pred EcCcchhhHHHHHHHHHHhHcCcEEEEcCC--CC----HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC-----CCCcc
Q psy8155 419 TPLPLYHTAGGAMCIGQALIFGCCVVIRKK--FS----ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK-----PEDKA 487 (617)
Q Consensus 419 ~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~--~d----~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~~~~l 487 (617)
+.+|++|+.+. ..++.+|+.|+++++.+. .+ +..+++.|++++||++.++|++++.|++.... ...++
T Consensus 301 ~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l 379 (647)
T PTZ00237 301 SHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDL 379 (647)
T ss_pred EcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCc
Confidence 99999997653 467899999999999764 12 68899999999999999999999999875422 23467
Q ss_pred Cceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCC--------------
Q psy8155 488 HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY-------------- 551 (617)
Q Consensus 488 ~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~-------------- 551 (617)
++||.++ |+++++++.+++.+.++. .++|.||+||+...+.......... ...++..+|.+
T Consensus 380 ~~Lr~i~~~G~~l~~~~~~~~~~~~g~-~i~~~yG~TE~~~~~~~~~~~~~~~--~~s~G~p~~g~~~~i~d~~g~~~~~ 456 (647)
T PTZ00237 380 SNLKEIWCGGEVIEESIPEYIENKLKI-KSSRGYGQTEIGITYLYCYGHINIP--YNATGVPSIFIKPSILSEDGKELNV 456 (647)
T ss_pred chheEEEecCccCCHHHHHHHHHhcCC-CEEeeechHHhChhhhccCCCCCCC--CCCCccCcCCceEEEECCCCCCCCC
Confidence 8999887 889999999999999885 7999999999964433111000000 00111122211
Q ss_pred CcCcEEEEeeccc-CCccchhhhH-----HHhh-cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 552 ARPLFIRCLREVE-MTGTYKLKKL-----DLQK-EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 552 ~~P~~~~~~~~lP-~t~~GK~dr~-----~L~~-~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.....+++...+| ....|..+.. .+.+ +|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 457 ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~--~~TGD-lg~~d~d-G~l~i~GR~dd~i~~~G~rI 525 (647)
T PTZ00237 457 NEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGY--YNSGD-LGFKDEN-GYYTIVSRSDDQIKISGNKV 525 (647)
T ss_pred CCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCE--EECCc-EEEECCC-CeEEEEeccCCEEEECCEEe
Confidence 0112233333222 2223333222 2222 577 77999 9999998 99999999999999999987
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=437.35 Aligned_cols=399 Identities=15% Similarity=0.133 Sum_probs=284.3
Q ss_pred HHHHHHhhCCCceEEEECC--------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 213 IFREHAVRSPNKVIFMFEN--------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 213 ~~~~~a~~~p~~~Al~~~~--------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.+.+++.++|+++|+++.+ +++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 180 ~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav 259 (728)
T PLN03052 180 CLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCV 259 (728)
T ss_pred HHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 4555556789999999864 37999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchH------HHHHHHHHhcCCCeEEEEeCCCCCC-CCCCCCCcCCcchhhc
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELT------DAVQEISTSLGSNVKLFSWSPDTDS-SSSPVPRSQALSPLLS 357 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 357 (617)
++|++|.++.+++.+++++++++++|+++... +....+...... .++++...... ..........|++++.
T Consensus 260 ~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~--~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
T PLN03052 260 VVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAP--KAIVLPADGKSVRVKLREGDMSWDDFLA 337 (728)
T ss_pred EEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCC--cEEEEeCCCCccccccccCCccHHHHHh
Confidence 99999999999999999999999999987532 122222222221 23333221100 0000011234555443
Q ss_pred cCCCC--CC-CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 358 EVPTS--PP-SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 358 ~~~~~--~~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
..... .. .......+++++||+|||||||+||||+++|++++..+......++++++|++++.++++|+++. +.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~-~~v~ 416 (728)
T PLN03052 338 RANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGP-WLVY 416 (728)
T ss_pred ccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHH-HHHH
Confidence 22110 00 11112356899999999999999999999999988877766667889999999999999999885 7788
Q ss_pred HHhHcCcEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcC
Q psy8155 435 QALIFGCCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFR 511 (617)
Q Consensus 435 ~~L~~G~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~ 511 (617)
.+|+.|+++++.++ .++..+++++++++||++.++|++++.|.+.......++++||.++ ||+++++....+.+.++
T Consensus 417 ~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~ 496 (728)
T PLN03052 417 ASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAG 496 (728)
T ss_pred HHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcC
Confidence 99999999999875 5677899999999999999999999999887654556789999887 89999999888888776
Q ss_pred cccccccccccccceEEeCCC--CCCCHHHH-----------HHHHhhcCCCCC-cCcEEEEeecccCCccchhhhHHHh
Q psy8155 512 IAQIGEFYGATEGMAAILDIN--KSLDVSAV-----------SEGIKKALPSYA-RPLFIRCLREVEMTGTYKLKKLDLQ 577 (617)
Q Consensus 512 ~~~l~n~YG~TE~~~~v~~~~--~~~~~~~l-----------~~~l~~~Lp~~~-~P~~~~~~~~lP~t~~GK~dr~~L~ 577 (617)
...++|.||+||+...++... .+.....+ .+.-.+.+|.-. -...+++...++....|..+.+. .
T Consensus 497 ~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~ 575 (728)
T PLN03052 497 YKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-Y 575 (728)
T ss_pred CCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-h
Confidence 446999999999865443111 01000000 000011111110 01123322211111111111111 1
Q ss_pred hc---------CCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 KE---------GFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ~~---------g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+. |-.+++||| ++++|+| |+++|+||.||+||++|+||
T Consensus 576 ~~yf~~~p~~~g~~~~~tGD-l~~~d~d-G~l~i~GR~Dd~I~~~G~rI 622 (728)
T PLN03052 576 KVYFKGMPVFNGKILRRHGD-IFERTSG-GYYRAHGRADDTMNLGGIKV 622 (728)
T ss_pred hhhhhcCCCCCCCEEEecCc-eEEECCC-CeEEEEecCCCEEeeCCEEe
Confidence 11 101368999 9999998 99999999999999999987
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=420.09 Aligned_cols=399 Identities=19% Similarity=0.242 Sum_probs=312.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.+.|+++++.+|+++|+.+.++++||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v 83 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVV 83 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEeCCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+++.++.+++..+++++++++++++.............++....++........ ........+.++....... ..
T Consensus 84 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~ 159 (513)
T PRK07656 84 PLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGDPA--ER 159 (513)
T ss_pred ecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccc--cCccccccHHHHHhcCCCC--CC
Confidence 9999999999999999999999999988776666554444443444444332211 0000123344444332221 11
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.....++++++|+|||||||.||||.++|+++.+.+.+....+++.+++++++.+|++|..++...++.++..|+++++.
T Consensus 160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 239 (513)
T PRK07656 160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL 239 (513)
T ss_pred cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence 23457789999999999999999999999999999988888999999999999999999999877789999999999998
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 524 (617)
+..++..+++.|+++++|++.++|+++..|++........++++|.++ |++++++++++|.+.++...++|.||+||+
T Consensus 240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 319 (513)
T PRK07656 240 PVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEA 319 (513)
T ss_pred CcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccC
Confidence 889999999999999999999999999999988776666788999887 888999999999999986469999999999
Q ss_pred ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHH-----HhhcCCCC
Q psy8155 525 MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLD-----LQKEGFDP 583 (617)
Q Consensus 525 ~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~-----L~~~g~~~ 583 (617)
...................++..+|. ..+.++++ + |....|+.+... +..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~vG~~~~~----~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~-- 393 (513)
T PRK07656 320 SGVTTFNRLDDDRKTVAGTIGTAIAG----VENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGW-- 393 (513)
T ss_pred CCceeecCccccccccCCCccccCCC----cEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCc--
Confidence 54443111100000000011222221 12233221 1 111223332222 233677
Q ss_pred CccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 584 NVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 584 ~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|+++++ |+++++||.||+||++|.||
T Consensus 394 ~~tGD-l~~~~~~-g~~~~~GR~~d~i~~~G~~v 425 (513)
T PRK07656 394 LHTGD-LGRLDEE-GYLYIVDRKKDMFIVGGFNV 425 (513)
T ss_pred eeccc-eEEEcCC-eeEEEEecccceEEeCCEEe
Confidence 77999 9999997 99999999999999999986
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=438.70 Aligned_cols=400 Identities=18% Similarity=0.156 Sum_probs=292.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC------------C-----------ceecHHHHHHHHHHHHHHHHHCCCCCCCEE
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE------------N-----------TEWTAQQVEAYSNRVANFFLAQGLKKGDSV 261 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~------------~-----------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V 261 (617)
+...|+.++|+++++++|+++|+... + ..+||+||+++++++|++|.++|+++|++|
T Consensus 55 ~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~V 134 (696)
T PLN02387 55 EGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERV 134 (696)
T ss_pred CCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 34568999999999999999999431 2 238999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCC
Q psy8155 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDS 341 (617)
Q Consensus 262 ~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 341 (617)
+|+++|+++|+++++||+++|+++|||++.++.+++.++|++++++++|++.+..+.+..+...++....++.+++....
T Consensus 135 ai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~ 214 (696)
T PLN02387 135 AIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVD 214 (696)
T ss_pred EEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCch
Confidence 99999999999999999999999999999999999999999999999999988877777766666666677777653221
Q ss_pred CCC-----CCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh-CCCCCC
Q psy8155 342 SSS-----PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-GFRTKD 415 (617)
Q Consensus 342 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d 415 (617)
... .......+.++........ .......++|+++|+|||||||.||||++||+++...+......+ +++++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d 293 (696)
T PLN02387 215 SDSSLSGSSNWTVSSFSEVEKLGKENP-VDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKND 293 (696)
T ss_pred hhhhhhccCCcEEEEHHHHHHhhccCC-CCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCC
Confidence 000 0001223444433221111 111234689999999999999999999999999998887766554 588999
Q ss_pred EEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCC------C--HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC----
Q psy8155 416 RFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF------S--ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP---- 483 (617)
Q Consensus 416 ~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~------d--~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---- 483 (617)
++++++|++|..++... +..+..|+++.+.... + +..+++.++++++|++..+|.+++.+.+.....
T Consensus 294 ~~l~~lPl~Hi~~~~~~-~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~ 372 (696)
T PLN02387 294 VYLAYLPLAHILELAAE-SVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAK 372 (696)
T ss_pred EEEEECcHHHHHHHHHH-HHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcc
Confidence 99999999999987554 3467788887764321 1 234567899999999999999999886431100
Q ss_pred -----------------------------CC--------------ccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 484 -----------------------------ED--------------KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 484 -----------------------------~~--------------~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
.. ..+++|.++ |+++++++.+.+...++. .+++.
T Consensus 373 ~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~-~v~~~ 451 (696)
T PLN02387 373 GGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGA-PIGQG 451 (696)
T ss_pred cHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCC-CeeEe
Confidence 00 015788887 777999998777777876 69999
Q ss_pred ccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCc-----------------C-cEEEEeecccCCccchhhhHHHhh-
Q psy8155 519 YGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYAR-----------------P-LFIRCLREVEMTGTYKLKKLDLQK- 578 (617)
Q Consensus 519 YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~-----------------P-~~~~~~~~lP~t~~GK~dr~~L~~- 578 (617)
||+||+++.+. ........ ..++..+|...+ | ..+.+.+ |....|+.++.+.++
T Consensus 452 YG~TEt~~~~~~~~~~~~~~----gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG--p~v~~GY~~~pe~T~~ 525 (696)
T PLN02387 452 YGLTETCAGATFSEWDDTSV----GRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG--PSVTLGYFKNQEKTDE 525 (696)
T ss_pred echhhcccceeecCcccCCC----CccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc--CcccchhcCCHHHHhh
Confidence 99999965443 11111000 012222222110 1 1122211 233345555544433
Q ss_pred ------cC--CCCCccCCeeEEEeCCCceeeCCHHHHHHHhc-CCcCC
Q psy8155 579 ------EG--FDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQ-GNIRL 617 (617)
Q Consensus 579 ------~g--~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~-~G~~v 617 (617)
+| | ++||| +|++|+| |+|+|+||+||+||. +|+||
T Consensus 526 ~f~~d~~G~~W--~~TGD-ig~~d~d-G~l~i~gR~kd~ik~~~Ge~I 569 (696)
T PLN02387 526 VYKVDERGMRW--FYTGD-IGQFHPD-GCLEIIDRKKDIVKLQHGEYV 569 (696)
T ss_pred hhccccCCCce--eecCc-eEEECCC-CcEEEEEcccceEECCCCeEE
Confidence 34 6 77999 9999998 999999999999996 79987
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=440.82 Aligned_cols=394 Identities=17% Similarity=0.142 Sum_probs=292.3
Q ss_pred HHhhccCCCHHHHHHHHHhhCCC-ceEEEEC-CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy8155 201 RRVAQKDLTIADIFREHAVRSPN-KVIFMFE-NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278 (617)
Q Consensus 201 ~~~~~~~~tl~~~~~~~a~~~p~-~~Al~~~-~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~ 278 (617)
.....+..|+.++|.++++++|+ ++|+.+. .+.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||
T Consensus 197 ~~~~~~~~t~~~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~ 275 (718)
T PRK08043 197 RMAVRPRETLYEALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGA 275 (718)
T ss_pred HhhcCCCCCHHHHHHHHHHHhCCCCcceEcCCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHH
Confidence 33444568999999999999998 6888764 47899999999999999999987 599999999999999999999999
Q ss_pred HhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHH--HHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh-
Q psy8155 279 SKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQ--EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL- 355 (617)
Q Consensus 279 ~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 355 (617)
+++|++++|+++.++.+++.+++++++++++|++.+..+... .....++ ....+.+++... ...+...
T Consensus 276 ~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~--------~~~~~~~~ 346 (718)
T PRK08043 276 SLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLT-QVRWVYLEDLKD--------DVTTADKL 346 (718)
T ss_pred HHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhc-cccEEEhhhhhh--------hcchhHHH
Confidence 999999999999999999999999999999999877544211 1111111 122333322100 0001000
Q ss_pred -hccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 356 -LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 356 -~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
................++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..++...++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~ 426 (718)
T PRK08043 347 WIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLF 426 (718)
T ss_pred HHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHH
Confidence 0000000000112346789999999999999999999999999999888888889999999999999999998877888
Q ss_pred HHhHcCcEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcC
Q psy8155 435 QALIFGCCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFR 511 (617)
Q Consensus 435 ~~L~~G~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~ 511 (617)
.+|..|+++++.+. +++..+++.++++++|++..+|+++..+.... ...++++||.++ |+++++++.++|.+.++
T Consensus 427 ~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g 504 (718)
T PRK08043 427 TPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFG 504 (718)
T ss_pred HHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcC
Confidence 99999999999875 67888999999999999999999998876542 234578999887 78899999999999988
Q ss_pred cccccccccccccceEEeCC-CCCCCHHHHHHHHhhcCCCCCc----------CcEEEEeecccCCccchhh--hHH---
Q psy8155 512 IAQIGEFYGATEGMAAILDI-NKSLDVSAVSEGIKKALPSYAR----------PLFIRCLREVEMTGTYKLK--KLD--- 575 (617)
Q Consensus 512 ~~~l~n~YG~TE~~~~v~~~-~~~~~~~~l~~~l~~~Lp~~~~----------P~~~~~~~~lP~t~~GK~d--r~~--- 575 (617)
. .++|.||+||+...+... ..... ...++..+|...+ ...+.+.+ |....|+.+ ...
T Consensus 505 ~-~l~~~YG~TE~~~~~~~~~~~~~~----~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g--~~v~~GY~~~e~~~~~~ 577 (718)
T PRK08043 505 L-RILEGYGVTECAPVVSINVPMAAK----PGTVGRILPGMDARLLSVPGIEQGGRLQLKG--PNIMNGYLRVEKPGVLE 577 (718)
T ss_pred C-CeecccCcccccceEEecCCcccC----CCCCCCcCCCCeeEEecCCCCCCceEEEEec--CCccccccCCCCccccc
Confidence 6 799999999996544411 11000 0112223332111 11122211 111223332 111
Q ss_pred ---------HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 ---------LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 ---------L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|| ++||| +|++|+| |+++|+||+||+||++|+||
T Consensus 578 ~~~~~~~~~~~~~gw--~~TGD-lg~~d~d-G~l~i~GR~~d~I~~~G~~V 624 (718)
T PRK08043 578 VPTAENARGEMERGW--YDTGD-IVRFDEQ-GFVQIQGRAKRFAKIAGEMV 624 (718)
T ss_pred ccccccccccccCCe--EecCC-EEEEcCC-CcEEEEecCCCeeEeCcEEc
Confidence 123577 77999 9999998 99999999999999999987
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=421.79 Aligned_cols=397 Identities=18% Similarity=0.216 Sum_probs=306.0
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
+..++.++|.+.+.++|+++|+++.++.+||+||.++++++|+.|.+. |+++|++|+++++|+++++++++||+++|++
T Consensus 8 ~~~tl~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 87 (546)
T PRK08314 8 PETSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87 (546)
T ss_pred CCCCHHHHHHHHHHHcCCCcceeecCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcE
Confidence 466899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCC--CC-CC---------------CCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDT--DS-SS---------------SPV 346 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~---------------~~~ 346 (617)
++|++|.++.+++..+++++++++++++.+..+.+......+. ...++..+... .. .. ...
T Consensus 88 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (546)
T PRK08314 88 VVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLR-LRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAP 166 (546)
T ss_pred EeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccC-cceEEEecchhhcccccccCcccccccccccccccc
Confidence 9999999999999999999999999999887776665443332 12222221000 00 00 000
Q ss_pred CCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhh
Q psy8155 347 PRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 426 (617)
.....+++...... ........++++|+|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|.
T Consensus 167 ~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~ 243 (546)
T PRK08314 167 GGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243 (546)
T ss_pred cccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHH
Confidence 11223333332211 111224567899999999999999999999999999999888888899999999999999999
Q ss_pred HHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHH
Q psy8155 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 427 ~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
.++...++.+|..|+++++.+.+++..+++.++++++|++.++|+++..++........+++++|.++ |+++++++++
T Consensus 244 ~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~ 323 (546)
T PRK08314 244 TGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAE 323 (546)
T ss_pred HHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHH
Confidence 99878888999999999999999999999999999999999999999999877655555678899887 8889999999
Q ss_pred HHHHHcCcccccccccccccceEEeCCC-CCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCC
Q psy8155 505 EFVDRFRIAQIGEFYGATEGMAAILDIN-KSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMT 566 (617)
Q Consensus 505 ~~~~~~~~~~l~n~YG~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t 566 (617)
+|.+.++. +++|.||+||+...+.... ..... ..+...+|.. .+.+++. + |..
T Consensus 324 ~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~----~~~G~~~~g~----~~~i~d~~~~~~~~~g~~Gel~v~g~~~ 394 (546)
T PRK08314 324 RLKELTGL-DYVEGYGLTETMAQTHSNPPDRPKL----QCLGIPTFGV----DARVIDPETLEELPPGEVGEIVVHGPQV 394 (546)
T ss_pred HHHHHcCC-cEEecccccccccceecCCCcCCCC----CccCcccCCe----EEEEEeCCCCcCCCCCCceEEEEECCch
Confidence 99999985 7999999999865544211 10000 0011111111 1112210 1 222
Q ss_pred ccchhhhHHHhh------cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 567 GTYKLKKLDLQK------EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 567 ~~GK~dr~~L~~------~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|+.+.....+ +|-.|++||| +|++|++ |+++++||+||+||++|+||
T Consensus 395 ~~gY~~~~~~t~~~f~~~~~~~~~~TGD-l~~~~~~-g~l~~~GR~~d~i~~~G~~v 449 (546)
T PRK08314 395 FKGYWNRPEATAEAFIEIDGKRFFRTGD-LGRMDEE-GYFFITDRLKRMINASGFKV 449 (546)
T ss_pred hccccCChhHhhhhhhhcCCCceEecCC-EEEEcCC-CcEEEEecchhhEEeCCEEE
Confidence 234333332222 2312378999 9999997 99999999999999999986
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=428.78 Aligned_cols=393 Identities=17% Similarity=0.190 Sum_probs=288.3
Q ss_pred CCCHHHHHHHHHhhCCCceEEEEC-----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFE-----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
..++.++|+++++++|+++|+++. .+++||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 457999999999999999999874 268999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC-----hHHHHHHHHhcCceEEEEccc--hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 282 GVITALINHNLR-----QNSLLHCINIAGVSAFIYGAE--LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 282 G~~~vpldp~~p-----~~~l~~il~~~~~~~vl~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
|+++||++|.++ .+++.+++++++++++|+++. +...+... ......++..+..... .....+.+
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~-----~~~~~~~~ 189 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAV---VPADVEVVAVRGAVPG-----RAATPFAA 189 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhh---ccCCceEEEecCCCCC-----cccccHHH
Confidence 999999999998 799999999999999999854 22222211 1122334443321100 00233444
Q ss_pred hhccCCCCC-CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCC--CCCEEEEcCcchhhHHHHH
Q psy8155 355 LLSEVPTSP-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAM 431 (617)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~~ 431 (617)
+........ ........++++++|+|||||||.||||++||+++.+.+......+++. .++++++++|++|..++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~ 269 (614)
T PRK08180 190 LLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNH 269 (614)
T ss_pred HhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHH
Confidence 443211111 1111234678999999999999999999999999999888877777764 5689999999999998777
Q ss_pred HHHHHhHcCcEEEEcCC-CCH---HHHHHHHHHcCCcEEeecHHHHHHHHcCCC----CCCCccCceeeee--ccCCCHH
Q psy8155 432 CIGQALIFGCCVVIRKK-FSA---SNYFSDVCKYKCTVGQYIGEMCRYLLSTPE----KPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 432 ~~~~~L~~G~~lvi~~~-~d~---~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~----~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
.++.+|+.|+++++.+. +++ ..+++.++++++|+++++|+++..|++... .....+++||.++ |++++++
T Consensus 270 ~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~ 349 (614)
T PRK08180 270 NLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQD 349 (614)
T ss_pred HHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHH
Confidence 78889999999999763 444 467888999999999999999998886422 1223468999887 7889999
Q ss_pred HHHHHHHH----cCc-ccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCCcC-------cEEEEeecccCCcc
Q psy8155 502 IWSEFVDR----FRI-AQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYARP-------LFIRCLREVEMTGT 568 (617)
Q Consensus 502 ~~~~~~~~----~~~-~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~P-------~~~~~~~~lP~t~~ 568 (617)
+.++|.+. ++. ..+++.||+||+...+.. ....... ..++..+|...+- ..+.+.+ |....
T Consensus 350 ~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~----~svG~p~pg~~v~i~d~~~~GEi~vrg--~~v~~ 423 (614)
T PRK08180 350 VWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA----GNIGLPAPGCEVKLVPVGGKLEVRVKG--PNVTP 423 (614)
T ss_pred HHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCC----CcccCccCCcEEEEecCCCCcEEEEec--Cccch
Confidence 99999875 332 369999999999644431 1111111 1233333332210 0122111 22234
Q ss_pred chhhhHH-----HhhcCCCCCccCCeeEEE----eCCCceeeCCHHHHHHHh-cCCcCC
Q psy8155 569 YKLKKLD-----LQKEGFDPNVIQDRLYYL----SSKGVYEELTPEVYKDLV-QGNIRL 617 (617)
Q Consensus 569 GK~dr~~-----L~~~g~~~~~TGD~lg~~----d~d~G~l~i~GR~~d~I~-~~G~~v 617 (617)
|+.++.. +..+|| ++||| +|++ |+| |+++|+||+||+|| .+|+||
T Consensus 424 GY~~~p~~t~~~~~~dgw--~~TGD-lg~~~~~~d~~-g~l~i~GR~~d~i~~~~G~~i 478 (614)
T PRK08180 424 GYWRAPELTAEAFDEEGY--YRSGD-AVRFVDPADPE-RGLMFDGRIAEDFKLSSGTWV 478 (614)
T ss_pred hhcCChhHhHhhcccCCc--eeccc-eEEecCCcCCC-CceEEecchhhhEEcCCCcEe
Confidence 5554433 335688 77999 9999 455 99999999999998 589864
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=421.75 Aligned_cols=397 Identities=25% Similarity=0.366 Sum_probs=304.8
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
....++.++|+++++.+|+++|+++.++.+||+||.++++++|..|.+.|+++|++|+++++|++++++++|||+++|++
T Consensus 18 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~ 97 (542)
T PRK06155 18 PSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI 97 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeCCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++|+++.++.+++..+++++++++++++.+....+............++.++..... .. ...+.... .......
T Consensus 98 ~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~-~~~~~~~ 171 (542)
T PRK06155 98 AVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV---SV--PAGWSTAP-LPPLDAP 171 (542)
T ss_pred EEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc---cc--ccccchhh-hcccCCC
Confidence 999999999999999999999999999988777665543322222345555432110 00 00011000 0000011
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......++++++|+|||||||.||||+++|+++.+........+++++++++++..|++|..++ ..++.++..|++++
T Consensus 172 ~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~ 250 (542)
T PRK06155 172 APAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYV 250 (542)
T ss_pred CCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEE
Confidence 11123467899999999999999999999999999888878888899999999999999999885 56789999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeeeccCCCHHHHHHHHHHcCccccccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 524 (617)
+.+++++..+++.|+++++|++.++|+++..|.+.........+++|.++|+++++++.++|.+.++. .++|.||+||+
T Consensus 251 ~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~-~v~~~YG~tE~ 329 (542)
T PRK06155 251 LEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGV-DLLDGYGSTET 329 (542)
T ss_pred eeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCC-CEEeeeccccc
Confidence 99999999999999999999999999999999987765555678899888666899999999999886 69999999998
Q ss_pred ceEEeCCCCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeeccc-CCccchhhhHHHh----hcCCCCCc
Q psy8155 525 MAAILDINKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLREVE-MTGTYKLKKLDLQ----KEGFDPNV 585 (617)
Q Consensus 525 ~~~v~~~~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~lP-~t~~GK~dr~~L~----~~g~~~~~ 585 (617)
...+.......... .+...+|... ....+.+-..-| ....|+.+..... ++|| ++
T Consensus 330 ~~~~~~~~~~~~~~----~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~--~~ 403 (542)
T PRK06155 330 NFVIAVTHGSQRPG----SMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLW--FH 403 (542)
T ss_pred CccccCCCCCCCCC----CcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCc--Ee
Confidence 65443211100000 0111111100 011222222111 1234444333322 3567 77
Q ss_pred cCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 586 IQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 586 TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
||| +|++|+| |+++|+||.||+||++|+||
T Consensus 404 TGD-~~~~~~d-G~l~i~GR~~d~i~~~G~~v 433 (542)
T PRK06155 404 TGD-RVVRDAD-GWFRFVDRIKDAIRRRGENI 433 (542)
T ss_pred ccc-eEEEcCC-ceEEEEecCCCEEEeCCEEE
Confidence 999 9999998 99999999999999999986
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=413.57 Aligned_cols=398 Identities=21% Similarity=0.195 Sum_probs=286.2
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
...++..++.++++.+|+.+|+... .+.+||+|+.+++.++|++|++.|+..||+|+|++.|+++|+++.+|||.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~ 93 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILAL 93 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 4567899999999999999999864 678999999999999999999999977999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccc-hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc---
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAE-LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS--- 357 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--- 357 (617)
|++.||+.++..+++++++|+++++++++++.. ..+.+..+...++.........+.... ...+....+.....
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 171 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVRE--AVEAKALVLEVFPDEGI 171 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhh--ccchhhccccccccccc
Confidence 999999999999999999999999999999984 444444444433221111110000000 00000000000000
Q ss_pred ----cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC-CCCCCEEEEcCcchhhHHHHHH
Q psy8155 358 ----EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-FRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 358 ----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
...........+..++|+|.|+|||||||.|||||+||+|++..+....+..+ ++++|++++++|++|....+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~ 251 (613)
T COG1022 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFE 251 (613)
T ss_pred hhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHH
Confidence 01111111113458999999999999999999999999999999999999997 9999999999999999987665
Q ss_pred HHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcC--------CCCC---------------------
Q psy8155 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST--------PEKP--------------------- 483 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~--------~~~~--------------------- 483 (617)
. .+..++.++.....++..+++.+.++++|++..||.+|+.+-+. +...
T Consensus 252 ~--~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~ 329 (613)
T COG1022 252 G--GLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLG 329 (613)
T ss_pred H--HHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 4 34444444444556899999999999999999999999866531 1000
Q ss_pred ------------------C-CccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe-CCCCCCCHHHHH
Q psy8155 484 ------------------E-DKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL-DINKSLDVSAVS 541 (617)
Q Consensus 484 ------------------~-~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~ 541 (617)
. ..-.++|+++ |+++++++...++.. ++ .+.++||+|||.+.+. .+......
T Consensus 330 ~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi-~i~eGYGlTEts~~~~v~~~~~~~~---- 403 (613)
T COG1022 330 GGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GI-PILEGYGLTETSAVVSVNPPDRFVL---- 403 (613)
T ss_pred cCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CC-CeEEEecccccccceEEccccCccc----
Confidence 0 0113677776 666999988777655 65 7999999999977666 32222221
Q ss_pred HHHhhcCCCCCcC----cEEEEeecccCCccchh---hhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHh-cC
Q psy8155 542 EGIKKALPSYARP----LFIRCLREVEMTGTYKL---KKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLV-QG 613 (617)
Q Consensus 542 ~~l~~~Lp~~~~P----~~~~~~~~lP~t~~GK~---dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~-~~ 613 (617)
..+++.+|.-.+- ..+.+.+..-+.++.|- ...+++++|| ++||| +|.+|++ |+|+|+||+||+|| .+
T Consensus 404 gtvG~p~p~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGW--f~TGD-lg~~d~~-g~L~i~gRkK~~i~l~~ 479 (613)
T COG1022 404 GTVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGW--FRTGD-LGELDED-GYLVITGRKKELIKLSN 479 (613)
T ss_pred CCcCCcCCCceEEEccCceEEEecchhcchhcCChHHHhhhccccCC--cccCc-eeEEcCC-CcEEEeecccceEECCC
Confidence 1223444432111 11222222223333332 2345778999 77999 9999998 99999999999999 59
Q ss_pred CcCC
Q psy8155 614 NIRL 617 (617)
Q Consensus 614 G~~v 617 (617)
|+||
T Consensus 480 GknI 483 (613)
T COG1022 480 GKNI 483 (613)
T ss_pred Cccc
Confidence 9987
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=420.69 Aligned_cols=380 Identities=25% Similarity=0.354 Sum_probs=293.5
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL-KKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv-~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
.|+.+++.+++ .|+++|+++.+..+||+||.++++++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v 80 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLV 80 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEE
Confidence 46888888764 79999999999999999999999999999999999 7999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+||.++.+++..++++++++++|++++..+.+.++. . ....++.++.. .+.+++.......+
T Consensus 81 ~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~-~~~~~i~~~~~------------~~~~~~~~~~~~~~-- 143 (540)
T PRK13388 81 GLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--L-PGVRVLDVDTP------------AYAELVAAAGALTP-- 143 (540)
T ss_pred EecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--c-cCceEEEccch------------hhhhhhccccCcCC--
Confidence 9999999999999999999999999987765554431 1 12344444321 12222221111111
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.....++++++|+|||||||+||||+++|+++.+...+....+++.++|+++..+|++|..++...++.+|..|+++++.
T Consensus 144 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~ 223 (540)
T PRK13388 144 HREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALP 223 (540)
T ss_pred CCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEEC
Confidence 11346799999999999999999999999999998888888999999999999999999988766566789999999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeeeccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
+.+++..+++.|+++++|++..+|+.+..++..+.......++++.++|++++++..++|.+.++. +++|.||+||+..
T Consensus 224 ~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~-~l~~~YG~tE~~~ 302 (540)
T PRK13388 224 AKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGC-QVEDGYGSSEGAV 302 (540)
T ss_pred CCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCC-ceecccccccccc
Confidence 889999999999999999999999999999876554333345777766888999999999999876 7999999999975
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCC--------------------------cCcEEEEeecccCCccchhhhHHHh---
Q psy8155 527 AILDINKSLDVSAVSEGIKKALPSYA--------------------------RPLFIRCLREVEMTGTYKLKKLDLQ--- 577 (617)
Q Consensus 527 ~v~~~~~~~~~~~l~~~l~~~Lp~~~--------------------------~P~~~~~~~~lP~t~~GK~dr~~L~--- 577 (617)
.+...... .. ..++..+|... ....+.+. .-|....|+.+.....
T Consensus 303 ~~~~~~~~-~~----~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~-~g~~~~~gY~~~~~~t~~~ 376 (540)
T PRK13388 303 IVVREPGT-PP----GSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNT-AGAGFFEGYYNNPEATAER 376 (540)
T ss_pred eeecCCCC-CC----CCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEe-cCCcccccccCChHHHHHH
Confidence 55421110 00 01111122110 00111111 0122233444443333
Q ss_pred -hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 -KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 -~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| ++||| +|++|+| |+++++||+||+||++|+||
T Consensus 377 ~~~g~--~~TGD-~~~~~~d-g~l~i~GR~~d~i~~~G~~v 413 (540)
T PRK13388 377 MRHGM--YWSGD-LAYRDAD-GWIYFAGRTADWMRVDGENL 413 (540)
T ss_pred hhcCc--eeccc-eEEEcCC-CcEEEeccCCceEEECCEEe
Confidence 2577 78999 9999997 99999999999999999986
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=431.28 Aligned_cols=401 Identities=15% Similarity=0.119 Sum_probs=288.6
Q ss_pred HHHHHHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 210 IADIFREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 210 l~~~~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
.+++|+++++.+|+++|+++. .+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 477888888999999999972 36899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhc-CCCeEEEEeCCCCCCCCCCCCCcCCcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALS 353 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 353 (617)
+++|++|.++.+++.+++++++++++|+++.. .+.+.++.... .....++.++...............+.
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 214 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA 214 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence 99999999999999999999999999997642 33444433332 223455555432110000000112333
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH-HHHHHHhCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG-GAIAYQIGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
++......... ......+++++||+|||||||+||||+++|+++.... ......+++.++|++++.+|++|..+..+.
T Consensus 215 ~~~~~~~~~~~-~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 293 (629)
T PRK10524 215 TLRAQHLGARV-PVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYI 293 (629)
T ss_pred HHHhcCCCCCC-CceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHH
Confidence 33322111111 1112467899999999999999999999999875443 445556788999999999999998886678
Q ss_pred HHHHhHcCcEEEEcC----CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHH
Q psy8155 433 IGQALIFGCCVVIRK----KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~----~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
++.+|+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.... ...++++||.++ ||++++++.+
T Consensus 294 ~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~ 373 (629)
T PRK10524 294 VYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTAS 373 (629)
T ss_pred HHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHH
Confidence 899999999999976 35799999999999999999999999998876432 334678999887 8999999999
Q ss_pred HHHHHcCcccccccccccccceEEeC--CCCCCCHHHHHHHHhhcCCCC---------------CcCcEEEEeecccCC-
Q psy8155 505 EFVDRFRIAQIGEFYGATEGMAAILD--INKSLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVEMT- 566 (617)
Q Consensus 505 ~~~~~~~~~~l~n~YG~TE~~~~v~~--~~~~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP~t- 566 (617)
++.+.++. .++|.||+||+...++. .+....... ...+...+|.+ .....+.+...+|..
T Consensus 374 ~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~~-~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~ 451 (629)
T PRK10524 374 WISEALGV-PVIDNYWQTETGWPILAIARGVEDRPTR-LGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGC 451 (629)
T ss_pred HHHHhcCC-CeEeccccccccchhhcCCCCcccCcCC-CCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhh
Confidence 99998886 69999999999643321 110000000 00011111111 001122222222100
Q ss_pred ccchhhh-HHHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 567 GTYKLKK-LDLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 567 ~~GK~dr-~~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|.... .... ..|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~--~~TGD-l~~~d~d-G~l~i~GR~dd~i~~~G~ri 506 (629)
T PRK10524 452 MQTVWGDDDRFVKTYWSLFGRQV--YSTFD-WGIRDAD-GYYFILGRTDDVINVAGHRL 506 (629)
T ss_pred cCCccCChHHHHHhhhccCCCcE--EEcCC-cEEEcCC-CcEEEEEEecCeEEeCCEEe
Confidence 0111111 1111 2355 78999 9999998 99999999999999999986
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=419.51 Aligned_cols=392 Identities=18% Similarity=0.227 Sum_probs=300.5
Q ss_pred CCCHHHHHHHHHhhCCCceEEEE------CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~------~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
..++.++|+++++.+|+++|++. .++.+||+||+++++++|++|++.|+++|++|+++++|+.+++++++||++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 100 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACAR 100 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 46899999999999999999986 246899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
+|++++|++|.++.+++.++++.++++++++++.+. .....+....+....++.++... ...+...
T Consensus 101 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 171 (538)
T TIGR03208 101 IGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG---------DDSFDRV 171 (538)
T ss_pred cCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC---------CcCHHHH
Confidence 999999999999999999999999999999987642 22233333333334555554321 1112222
Q ss_pred hccCCC--CCC----CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHH
Q psy8155 356 LSEVPT--SPP----SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 356 ~~~~~~--~~~----~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 429 (617)
+..... ... .......++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|++|..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 251 (538)
T TIGR03208 172 LMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGF 251 (538)
T ss_pred hhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHH
Confidence 211100 000 11123567899999999999999999999999999999888888899999999999999999888
Q ss_pred HHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHH
Q psy8155 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFV 507 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~ 507 (617)
+..++.++..|+++++.+.+++..+++.|+++++|++..+|+++..+..........++++|.++ |+++++++.++|.
T Consensus 252 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~ 331 (538)
T TIGR03208 252 MYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAW 331 (538)
T ss_pred HHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHH
Confidence 88899999999999999989999999999999999999999999988865543344678898887 8889999999999
Q ss_pred HHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchh
Q psy8155 508 DRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKL 571 (617)
Q Consensus 508 ~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~ 571 (617)
+.++. .++|.||+||+........... ...-...++..+|.. .+.++++ + |....|+.
T Consensus 332 ~~~~~-~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~g~----~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~ 405 (538)
T TIGR03208 332 ELLGA-LIVSAWGMTENGAVTVTEPDDA-LEKASTTDGRPLPGV----EVKVIDANGAKLSQGETGRLLVRGCSNFGGYL 405 (538)
T ss_pred HHcCC-eEEeeeccCcCCCccccCcccc-hhhccCcccccCCCC----EEEEECCCCCCCcCCCCcEEEEecCccccccc
Confidence 99886 7999999999854433111100 000000111222221 2222221 1 11223444
Q ss_pred hhHHH---hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDL---QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L---~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++... ..+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 406 ~~~~~~~~~~~~~--~~TGD-~~~~~~~-g~l~~~gR~~~~i~~~G~~v 450 (538)
T TIGR03208 406 KRPHLNSTDAEGW--FDTGD-LAFQDAE-GYIRINGRSKDVIIRGGENI 450 (538)
T ss_pred CCcccccccCCCc--eeccc-eEEECCC-CcEEEEeccCceEEECCEEE
Confidence 33222 24567 78999 9999998 99999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=414.00 Aligned_cols=375 Identities=23% Similarity=0.310 Sum_probs=281.2
Q ss_pred HHHHHhhCCCceEEEE-CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCC
Q psy8155 214 FREHAVRSPNKVIFMF-ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292 (617)
Q Consensus 214 ~~~~a~~~p~~~Al~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~ 292 (617)
|+++|+++||++|+++ .++++||+||+++++++|..|++.|+++|++|+++++|+.+++++++||+++|++++|++|.+
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~ 80 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSL 80 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccc
Confidence 7899999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCceEEEE----ccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 293 RQNSLLHCINIAGVSAFIY----GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 293 p~~~l~~il~~~~~~~vl~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
+.+++.++++.++++++|+ +......+............++.++.... .....+.......... .
T Consensus 81 ~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--~ 149 (417)
T PF00501_consen 81 SEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDL---------PKKEALKSASLSDEPQ--S 149 (417)
T ss_dssp SHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSC---------TTCHHHHHHHHCHCSH--S
T ss_pred ccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccc---------cccccccccccccccc--c
Confidence 9999999999999999997 22222333344333334455666663221 0011111100000000 0
Q ss_pred C-CCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH--HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 369 R-VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA--YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 369 ~-~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
. ..++++++++|||||||.||+|.++|+++.+.+..+. ..++++ |++++.+|++|..+++..++.++..|+++++
T Consensus 150 ~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (417)
T PF00501_consen 150 PEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVL 227 (417)
T ss_dssp TTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEE
T ss_pred CCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccccccccccccccccc
Confidence 0 0568999999999999999999999999999888764 233334 6999999999999976889999999999999
Q ss_pred cCCCC---HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC----CCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 446 RKKFS---ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP----EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 446 ~~~~d---~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.+..+ ++.+++.|+++++|++.++|+++..|+++.+.. ..++++||.++ |+++++++.+++++.++...++
T Consensus 228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~ 307 (417)
T PF00501_consen 228 PSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII 307 (417)
T ss_dssp ESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE
T ss_pred cccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccce
Confidence 98754 577899999999999999999999999843222 34688899875 8999999999999999875799
Q ss_pred ccccccccceEEeCC--CCC-CCHHHHHHHHhhcCCCCCcCcEEEEeec-----------------ccCCccchhhhHHH
Q psy8155 517 EFYGATEGMAAILDI--NKS-LDVSAVSEGIKKALPSYARPLFIRCLRE-----------------VEMTGTYKLKKLDL 576 (617)
Q Consensus 517 n~YG~TE~~~~v~~~--~~~-~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----------------lP~t~~GK~dr~~L 576 (617)
+.||+||+....... ... .... .++..+|. ..+.++++ =|....|+.++...
T Consensus 308 ~~YG~tE~~~~~~~~~~~~~~~~~~----~~G~~~~~----~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~ 379 (417)
T PF00501_consen 308 NLYGSTETGSIATIRPPEDDIEKPG----SVGKPLPG----VEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPEL 379 (417)
T ss_dssp EEEEEGGGSSEEEEEETTTHHSSTT----SEBEESTT----EEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHH
T ss_pred ecccccccceeeecccccccccccc----cccccccc----cccccccccccccccccccccccccCCccceeeeccccc
Confidence 999999997666511 110 0000 01122221 12333332 12334555555333
Q ss_pred h-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcC
Q psy8155 577 Q-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQG 613 (617)
Q Consensus 577 ~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~ 613 (617)
. ++|| ++||| +||+|+| |+++++||.||+||++
T Consensus 380 ~~~~~~~~~~--~~TGD-~g~~d~~-G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 380 TAEAFIDDGW--YRTGD-LGRLDED-GYLYILGRSDDMIKVR 417 (417)
T ss_dssp HHHHEETTSE--EEEEE-EEEEETT-SEEEEEEEGSCEEEET
T ss_pred cccccccccc--eecce-EEEECCC-CeEEEEEeeCCEEEeC
Confidence 3 3367 78999 9999997 9999999999999975
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=426.85 Aligned_cols=396 Identities=16% Similarity=0.119 Sum_probs=288.0
Q ss_pred CHHHHHHHHHhhCCCceEEEECC-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 209 TIADIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
++.+.+.++ .+|+++|+++.+ +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 444444332 589999999853 5899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCCC-CCCCCCCcCCcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTDS-SSSPVPRSQALS 353 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~ 353 (617)
+++|++|.++.+++.+++++++++++|+++.. .+.+..+...++....++.++..... ..........|.
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWE 244 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHH
Confidence 99999999999999999999999999998653 23444444444443445555432110 000111133444
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHH-HHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY-FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
+++....... .......+++++||+|||||||+||||+++|++++ +.+......+++.++|++++.++++|+.. ..
T Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~ 321 (655)
T PRK03584 245 DFLAPAEAAE-LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMW--NW 321 (655)
T ss_pred HHhhccccCC-CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhH--HH
Confidence 5443211111 11224567899999999999999999999999875 44666677789999999999999988654 23
Q ss_pred HHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHHHH
Q psy8155 433 IGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
++.+|+.|+++++.+. .++..++++|+++++|++..+|++++.+..... ....++++||.++ ||++++++.+
T Consensus 322 ~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~ 401 (655)
T PRK03584 322 LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFD 401 (655)
T ss_pred HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHH
Confidence 6689999999999763 589999999999999999999999999886532 2235688999887 8999999999
Q ss_pred HHHHHcC-cccccccccccccceEEeCCC--CCCCHHHHHHHHhhcCCCC-------------CcCcEEEEeecccCCcc
Q psy8155 505 EFVDRFR-IAQIGEFYGATEGMAAILDIN--KSLDVSAVSEGIKKALPSY-------------ARPLFIRCLREVEMTGT 568 (617)
Q Consensus 505 ~~~~~~~-~~~l~n~YG~TE~~~~v~~~~--~~~~~~~l~~~l~~~Lp~~-------------~~P~~~~~~~~lP~t~~ 568 (617)
.|.+.++ ...+++.||+||++..+.... ...... .+...+|.. ..+..+++....|....
T Consensus 402 ~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g----~~g~p~~g~~~~ivd~~g~~~~g~~GeL~v~gp~p~~~~ 477 (655)
T PRK03584 402 WVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRG----EIQCRGLGMAVEAWDEDGRPVVGEVGELVCTKPFPSMPL 477 (655)
T ss_pred HHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCC----ccCCCcCCceeEEECCCCCCCCCCceEEEEccCCCCCcc
Confidence 9999984 347999999999854433111 111000 011111111 11223444333343334
Q ss_pred chhhhHHH---------hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLDL---------QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~L---------~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.+.... ..+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 478 gy~~~~~~~~~~~~~~~~~~g~--~~TGD-l~~~d~d-G~l~i~GR~dd~Ik~~G~rI 531 (655)
T PRK03584 478 GFWNDPDGSRYRDAYFDTFPGV--WRHGD-WIEITEH-GGVVIYGRSDATLNRGGVRI 531 (655)
T ss_pred eeeCCCccchHHHhhhccCCCE--eecCC-eEEECCC-CeEEEEeeccCeeecCcEEE
Confidence 44432211 11355 56999 9999998 99999999999999999986
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=421.95 Aligned_cols=386 Identities=19% Similarity=0.218 Sum_probs=286.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCc----------eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENT----------EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~----------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~l 276 (617)
..++.++|.+.++++|+++|+++.+. .+||+||+++++++|++|.+.|+++|++|+++++|++++++++|
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence 35788999999999999999998654 89999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc--hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 277 A~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
||+++|++++|++|.++.+++.+++++++++++|+++. ....+... .......++.++... ......+.+
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~------~~~~~~~~~ 156 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL------LWGGTTLAT 156 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc------ccCCccHHH
Confidence 99999999999999999999999999999999999752 22211110 001112233332110 000122333
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+....... ........+++++||+|||||||.||||+++|+++.+.+.+....+++.++++.+...|++|..+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~------ 229 (552)
T PRK09274 157 LLRDGAAA-PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFG------ 229 (552)
T ss_pred hcccCccc-cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhh------
Confidence 32111111 11122346789999999999999999999999999999998888999999999999999876433
Q ss_pred HHhHcCcEEEEcC-------CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHH
Q psy8155 435 QALIFGCCVVIRK-------KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSE 505 (617)
Q Consensus 435 ~~L~~G~~lvi~~-------~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~ 505 (617)
+..|+++++.+ .+++..+++.|+++++|+++++|++++.|++.......++++||.++ |+++++++.++
T Consensus 230 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~ 307 (552)
T PRK09274 230 --PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIER 307 (552)
T ss_pred --hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHH
Confidence 34688888864 36899999999999999999999999999987655556788999887 88899999999
Q ss_pred HHHHcCc-ccccccccccccceEEeCCCCC-C------CHHHHHHHHhhcCCCCCcCcEEEEeec-------------c-
Q psy8155 506 FVDRFRI-AQIGEFYGATEGMAAILDINKS-L------DVSAVSEGIKKALPSYARPLFIRCLRE-------------V- 563 (617)
Q Consensus 506 ~~~~~~~-~~l~n~YG~TE~~~~v~~~~~~-~------~~~~l~~~l~~~Lp~~~~P~~~~~~~~-------------l- 563 (617)
|.+.++. .+++|.||+||+.......... . ....-...++..+|.. .+.+++. +
T Consensus 308 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~----~~~ivd~~~~~~~~~~~~~~~~ 383 (552)
T PRK09274 308 FRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGV----EVRIIAISDAPIPEWDDALRLA 383 (552)
T ss_pred HHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCc----eEEEEeccccccccccccccCC
Confidence 9999963 5799999999986543311100 0 0000000112222221 1222220 1
Q ss_pred -----------cCCccchhhhHHHhh-------cC--CCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 -----------EMTGTYKLKKLDLQK-------EG--FDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 -----------P~t~~GK~dr~~L~~-------~g--~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++..... +| | ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 384 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w--~~TGD-lg~~d~d-G~l~~~GR~~d~i~~~G~~v 453 (552)
T PRK09274 384 TGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVW--HRMGD-LGYLDAQ-GRLWFCGRKAHRVETAGGTL 453 (552)
T ss_pred CCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcE--EEcCC-EEEEccC-CcEEEEeccCCeEEECCEEE
Confidence 223345554433322 34 5 88999 9999998 99999999999999999986
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-47 Score=419.93 Aligned_cols=401 Identities=17% Similarity=0.168 Sum_probs=291.5
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
+.++.++|++.++++|+++|+++.+.++||+||+++++++|++|.++|+++|++|+|+++|++++++++|||+++|++++
T Consensus 13 ~~~~~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~v 92 (579)
T PLN03102 13 PLTPITFLKRASECYPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLN 92 (579)
T ss_pred cccHHHHHHHHHHhCCCCeEEEECCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC-----CeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-----NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
|++|.++.+++.++++.++++++|++++..+.+..+...++. ..+++.++....... ......++.++......
T Consensus 93 pl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 171 (579)
T PLN03102 93 PINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-PSSEELDYECLIQRGEP 171 (579)
T ss_pred eccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-CcccccCHHHHHhccCC
Confidence 999999999999999999999999998877766655443321 234555543221100 00112233333332211
Q ss_pred CCCC---CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 362 SPPS---LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 362 ~~~~---~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
.... ......++++++|+|||||||.||||+++|+++..........+.++..++++..+|++|..++ ...+.++.
T Consensus 172 ~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~-~~~~~~~~ 250 (579)
T PLN03102 172 TPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGW-TFTWGTAA 250 (579)
T ss_pred CCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcch-hHHHHHHH
Confidence 1110 0112356899999999999999999999999976554444445567778899999999998886 44667889
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.|+++++.+.+++..+++.|+++++|++.++|+++..|++.........++++.++ |+++++.+.+++.+ ++. +++
T Consensus 251 ~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~-~i~ 328 (579)
T PLN03102 251 RGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LGF-QVM 328 (579)
T ss_pred hcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cCC-eEE
Confidence 99999999888999999999999999999999999999986543333344555454 67788888888764 665 799
Q ss_pred ccccccccceEEeCC--CCC---CCHH---HHHHHHh-----------------hcCCCC-CcCcEEEEeecccCCccch
Q psy8155 517 EFYGATEGMAAILDI--NKS---LDVS---AVSEGIK-----------------KALPSY-ARPLFIRCLREVEMTGTYK 570 (617)
Q Consensus 517 n~YG~TE~~~~v~~~--~~~---~~~~---~l~~~l~-----------------~~Lp~~-~~P~~~~~~~~lP~t~~GK 570 (617)
+.||+||+...+... ... .... +...... +.+|.- ..+..+.+.. |....|+
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g--~~~~~GY 406 (579)
T PLN03102 329 HAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKG--SSIMKGY 406 (579)
T ss_pred eecCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEEC--cchhhhh
Confidence 999999986543311 000 0000 0000000 001100 0111222211 2233455
Q ss_pred hhhHHHh----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 571 LKKLDLQ----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 571 ~dr~~L~----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+..... .+|| ++||| +||+|+| |+++|+||.||+||++|+||
T Consensus 407 ~~~~~~t~~~f~~gw--~~TGD-lg~~d~d-G~l~i~GR~~d~i~~~G~~v 453 (579)
T PLN03102 407 LKNPKATSEAFKHGW--LNTGD-VGVIHPD-GHVEIKDRSKDIIISGGENI 453 (579)
T ss_pred cCChhhhHhhhccCc--eecCc-eEEEcCC-CeEEEEeccCcEEEECCEEE
Confidence 5443332 3567 78999 9999998 99999999999999999986
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=419.88 Aligned_cols=388 Identities=18% Similarity=0.216 Sum_probs=298.4
Q ss_pred CHHHHHHHHHh-hCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 209 TIADIFREHAV-RSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 209 tl~~~~~~~a~-~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
.+.+.+.++++ .+|+++|+.+. .+++||+||.++++++|++|.+.|+++|++|+++++|++++++++||++++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~ 123 (570)
T PRK04319 44 IAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGA 123 (570)
T ss_pred HHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 34578888877 47999999875 36899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCC
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
+++|+++.++.+++.++++++++++++++......... ..++....++.+++... ......++.+.+...+...
T Consensus 124 v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 197 (570)
T PRK04319 124 IVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE----EGPGTLDFNALMEQASDEF 197 (570)
T ss_pred EEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC----CCcCccCHHHHHhhcCCcC
Confidence 99999999999999999999999999998776543321 12333334555443211 1111334444443322211
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 364 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
......++++++|+|||||||.||||+++|+++.+.+......+++.++|++++..|++|..++.+.++.+|..|+++
T Consensus 198 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~ 275 (570)
T PRK04319 198 --DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATN 275 (570)
T ss_pred --CccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceE
Confidence 112346789999999999999999999999999988888888889999999999999999988778899999999999
Q ss_pred EEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 444 VIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 444 vi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
++.+ .+++..+++.|+++++|++..+|++++.|++.... ...++++||.++ |+++++++.+++.+.++. ++++.
T Consensus 276 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~i~~~ 354 (570)
T PRK04319 276 VIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGL-PIHDN 354 (570)
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCC-CeEec
Confidence 9976 58999999999999999999999999999876432 234578999887 888999999999998886 79999
Q ss_pred ccccccceEEe-C-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEee------------------cccCCccchhhhHHHhh
Q psy8155 519 YGATEGMAAIL-D-INKSLDVSAVSEGIKKALPSYARPLFIRCLR------------------EVEMTGTYKLKKLDLQK 578 (617)
Q Consensus 519 YG~TE~~~~v~-~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~------------------~lP~t~~GK~dr~~L~~ 578 (617)
||+||+..... . ........ .++..+|.. .+.+++ ..|....|+.+.....+
T Consensus 355 YG~tE~~~~~~~~~~~~~~~~~----~~G~p~~g~----~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~ 426 (570)
T PRK04319 355 WWMTETGGIMIANYPAMDIKPG----SMGKPLPGI----EAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYE 426 (570)
T ss_pred eeecccCCEEEecCCCCCCCCC----cCcCCCCCC----EEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhh
Confidence 99999965443 1 11111110 122222221 122222 11222235544433332
Q ss_pred ----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 ----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 427 ~~~~~gw--~~TGD-l~~~~~~-g~l~~~GR~~d~i~~~G~~i 465 (570)
T PRK04319 427 SYFAGDW--YVSGD-SAYMDED-GYFWFQGRVDDVIKTSGERV 465 (570)
T ss_pred hhhcCCc--eEeCc-EEEECCC-eeEEEEecCCCEEEECCEEE
Confidence 567 77999 9999997 99999999999999999986
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=412.33 Aligned_cols=375 Identities=15% Similarity=0.186 Sum_probs=289.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+++.++|+++++++|+++|+++.++.+||.||.++++++|++|.+.|. +|++|+|+++|+.+++++++||+++|++++|
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 79 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVP 79 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecCCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEe
Confidence 468899999999999999999999999999999999999999999984 7999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++..+++.+++++++++......+.. ....++.+++ +.+.......... .
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~------~~~~~~~~~~--------------~~~~~~~~~~~~~--~ 137 (487)
T PRK07638 80 LDIKWKQDELKERLAISNADMIVTERYKLNDLPD------EEGRVIEIDE--------------WKRMIEKYLPTYA--P 137 (487)
T ss_pred cCccCCHHHHHHHHHhCCCCEEEEecccccchhh------ccceEEEehh--------------hhhhhhhcccccc--c
Confidence 9999999999999999999999999865544332 1123333322 1111111111110 1
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.....+++++|+|||||||.||||+++|+++...+......+++.++|+++...|++|..++ ..++.++..|+++++.+
T Consensus 138 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~ 216 (487)
T PRK07638 138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMR 216 (487)
T ss_pred cccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcC
Confidence 11234678999999999999999999999999988888888899999999999999998774 77889999999999999
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee-ccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~-Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
.+++..+++.|+++++|++.++|+++..|.+... ...+.++++. |+.+++++.+++.+.++..+++|.||+||+..
T Consensus 217 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 293 (487)
T PRK07638 217 KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSF 293 (487)
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCc
Confidence 9999999999999999999999999999987633 2345666666 88899999999999998778999999999965
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCccchhhhH----HHhhcCCCCCccCC
Q psy8155 527 AILDINKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKL----DLQKEGFDPNVIQD 588 (617)
Q Consensus 527 ~v~~~~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~----~L~~~g~~~~~TGD 588 (617)
........... ....++..+|.. ..+..+.+.. |....|+.++. ...++|| ++|||
T Consensus 294 ~~~~~~~~~~~--~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~g~--~~TGD 367 (487)
T PRK07638 294 VTALVDEESER--RPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS--PQFFMGYIIGGVLARELNADGW--MTVRD 367 (487)
T ss_pred eEEecccccCC--CCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEec--ccceeeecCCHHHHhhhccCCc--EecCc
Confidence 44421110000 000011111111 0111122211 11123333333 2345678 67999
Q ss_pred eeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 589 RLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 589 ~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|++|+| |+++++||+||+||++|+||
T Consensus 368 -l~~~d~~-g~l~i~GR~~d~i~~~G~~v 394 (487)
T PRK07638 368 -VGYEDEE-GFIYIVGREKNMILFGGINI 394 (487)
T ss_pred -cEeEcCC-CeEEEEecCCCeEEeCCEEE
Confidence 9999997 99999999999999999986
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=411.87 Aligned_cols=391 Identities=17% Similarity=0.266 Sum_probs=298.6
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|+++++++|+++|+++.++.+||+||.++++++|..|.+.|+++|++|+++++|+.+++++++|++++|++++
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 101 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPV 101 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
++++.++.+++.++++.+++++++++.... +.........+....++....... .......+.....
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 173 (527)
T TIGR02275 102 LALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV--------EAELFLWLESPAE 173 (527)
T ss_pred ccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC--------cchhhHHhhCcCc
Confidence 999999999999999999999999986532 122222222332233333321100 0001111111111
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHhHcC
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQALIFG 440 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L~~G 440 (617)
. .......++++|+|+|||||||.||||+++|+++...+.+....+.++++|+++..+|++|.+++.. .++.++..|
T Consensus 174 ~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G 251 (527)
T TIGR02275 174 P--VKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAG 251 (527)
T ss_pred c--ccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcC
Confidence 1 1122456789999999999999999999999999999888888899999999999999999888644 578899999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 441 ~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
+++++.+.+++..+++.++++++|++..+|+++..+++........++++|.++ |+++++++.+++.+.++. ++++.
T Consensus 252 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~~ 330 (527)
T TIGR02275 252 GCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGC-QLQQV 330 (527)
T ss_pred CeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCC-eEEee
Confidence 999998889999999999999999999999999999887666566788999887 888999999999999886 79999
Q ss_pred ccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhh-----HHHh
Q psy8155 519 YGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKK-----LDLQ 577 (617)
Q Consensus 519 YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr-----~~L~ 577 (617)
||+||+............. ........++.. ..+.++++ + |....|+.+. +.+.
T Consensus 331 YG~tE~~~~~~~~~~~~~~--~~~~~G~~~~~~---~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~ 405 (527)
T TIGR02275 331 FGMAEGLVNYTRLDDPAEI--IFTTQGRPMSPD---DEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFD 405 (527)
T ss_pred eccCccCccccCCCCcccc--ccccCCCCCCCC---ceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcC
Confidence 9999975433211110000 000011112110 11222221 1 1122233322 2344
Q ss_pred hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 406 ~dg~--~~TGD-l~~~~~~-g~l~~~gR~~d~i~~~G~~v 441 (527)
T TIGR02275 406 AEGF--YYTGD-LVRLTPE-GYIVVVGRAKDQINRGGEKI 441 (527)
T ss_pred cCCC--EEcCc-eEEEcCC-ccEEEEecccceeecCCEEE
Confidence 5677 77999 9999997 99999999999999999886
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=410.39 Aligned_cols=398 Identities=22% Similarity=0.307 Sum_probs=314.1
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.+.++.++|.++++.+|+++|+.+.++.+||+||+++++++|+.|.+.|+++|++|+++++++.+++++++||+++|+++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~ 83 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVL 83 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeCCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|+++.++.+++..+++.+++++++++.+..+.+..+....+....++.+++.... ........+.+++...+....
T Consensus 84 v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 160 (521)
T PRK06187 84 HPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA--PLAPEVGEYEELLAAASDTFD- 160 (521)
T ss_pred EecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc--ccccccccHHHHhhcCCccCC-
Confidence 99999999999999999999999999999888887776666555556665543311 111223445454443332222
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
.....++++++++|||||||.||+|.++|+++.+...+....+++.++|+++..+|++|..++.. .+.++..|+++++
T Consensus 161 -~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~ 238 (521)
T PRK06187 161 -FPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVI 238 (521)
T ss_pred -CCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEe
Confidence 23456789999999999999999999999999999998888999999999999999999888644 4559999999999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 446 ~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
.+..++..+++.++++++|++.++|++++.|.+........++++|.+. ||++++++.+.|.+.++. +++|.||+||
T Consensus 239 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~-~v~~~YG~tE 317 (521)
T PRK06187 239 PRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGI-DLVQGYGMTE 317 (521)
T ss_pred cCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCc-chheeeccCc
Confidence 9988999999999999999999999999999988776566788999887 899999999999999865 7999999999
Q ss_pred cceEEeCCCCCCCH-HH--HHHHHhhcCCCCCcCcEEEEeec----ccC--------------CccchhhhHHHh----h
Q psy8155 524 GMAAILDINKSLDV-SA--VSEGIKKALPSYARPLFIRCLRE----VEM--------------TGTYKLKKLDLQ----K 578 (617)
Q Consensus 524 ~~~~v~~~~~~~~~-~~--l~~~l~~~Lp~~~~P~~~~~~~~----lP~--------------t~~GK~dr~~L~----~ 578 (617)
+............. .. -...++..+|. ..+.++++ .|. ...|...+.... .
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~----~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~ 393 (521)
T PRK06187 318 TSPVVSVLPPEDQLPGQWTKRRSAGRPLPG----VEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID 393 (521)
T ss_pred cCcccccCCcccccccccccCCccccccCC----eEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh
Confidence 86544421110000 00 00001111111 12333321 111 122222222222 3
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|| ++||| +++++++ |++++.||.+|+||++|.||
T Consensus 394 ~~~--~~tGD-~~~~~~~-g~~~~~GR~~~~i~~~G~~v 428 (521)
T PRK06187 394 GGW--LHTGD-VGYIDED-GYLYITDRIKDVIISGGENI 428 (521)
T ss_pred CCc--eeccc-eEEEcCC-CCEEEeecccceEEcCCeEE
Confidence 455 88999 9999997 99999999999999999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-47 Score=423.88 Aligned_cols=383 Identities=14% Similarity=0.130 Sum_probs=284.7
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
+...++.++|+++++++|+++|+++. .+.+||+||+++++++|++|.+. +++||+|+++++|++++++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 44578999999999999999999873 25799999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEEec-CCCCC--hHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC--CeEEEEeCCCCCCCCCCCCCcC
Q psy8155 276 LGLSKLGVITALI-NHNLR--QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQ 350 (617)
Q Consensus 276 lA~~~aG~~~vpl-dp~~p--~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ 350 (617)
|||+++|++++|+ ++..+ .+++.+++++++++++|++.+..+.+.......+. ...++.++....
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD---------- 166 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc----------
Confidence 9999999999999 66665 68899999999999999998876665554333321 123333322100
Q ss_pred CcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHH
Q psy8155 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 430 (617)
... .. .......++++++|+|||||||+||||+++|+++...+......+++.++|+++.++|++|+.++
T Consensus 167 ----~~~---~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl- 236 (631)
T PRK07769 167 ----EVG---AT--WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGL- 236 (631)
T ss_pred ----ccc---cc--cCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhh-
Confidence 000 00 01113467899999999999999999999999999988888888899999999999999999997
Q ss_pred HHHHHHhHcCcEEEEcCC--C--CHHHHHHHHHHcCC---cEEeecHHHHHHHHcC---CCC--CCCccCceeeee--cc
Q psy8155 431 MCIGQALIFGCCVVIRKK--F--SASNYFSDVCKYKC---TVGQYIGEMCRYLLST---PEK--PEDKAHNVRLMF--GN 496 (617)
Q Consensus 431 ~~~~~~L~~G~~lvi~~~--~--d~~~l~~~i~~~~v---t~~~~~P~~~~~l~~~---~~~--~~~~l~~lr~v~--Ge 496 (617)
..++.+++.|+++++.++ + ++..+++.++++++ +++..+|+++..++.. +.. ...++++||.++ |+
T Consensus 237 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~ 316 (631)
T PRK07769 237 ITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSE 316 (631)
T ss_pred HHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccC
Confidence 456677888999998753 3 89999999999986 7899999988766542 111 134678999887 78
Q ss_pred CCCHHHHHHHHHHcC-----cccccccccccccceEEeCCCCCC-------CHHHHHH-----------------HHhhc
Q psy8155 497 GLRPQIWSEFVDRFR-----IAQIGEFYGATEGMAAILDINKSL-------DVSAVSE-----------------GIKKA 547 (617)
Q Consensus 497 ~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~v~~~~~~~-------~~~~l~~-----------------~l~~~ 547 (617)
+++++++++|.+.|+ ...++|.||+||+..++....... +...+.. .++..
T Consensus 317 ~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~ 396 (631)
T PRK07769 317 PVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKV 396 (631)
T ss_pred CCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCc
Confidence 899999999999873 125999999999866555211110 0111100 01111
Q ss_pred CCCCCcCcEEEEeec-----cc------------CCccchhhhHHHhh----------------------cCCCCCccCC
Q psy8155 548 LPSYARPLFIRCLRE-----VE------------MTGTYKLKKLDLQK----------------------EGFDPNVIQD 588 (617)
Q Consensus 548 Lp~~~~P~~~~~~~~-----lP------------~t~~GK~dr~~L~~----------------------~g~~~~~TGD 588 (617)
+| +..+.+++. +| ....|+.++...++ +|| ++|||
T Consensus 397 ~~----~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw--~~TGD 470 (631)
T PRK07769 397 GV----SEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALW--VRTGD 470 (631)
T ss_pred CC----CcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCe--eeccc
Confidence 11 112233321 22 22234444333221 256 78999
Q ss_pred eeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 589 RLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 589 ~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|+++ | |+|+|+||.||+||++|+||
T Consensus 471 -lg~~~-d-G~l~i~GR~~d~Ik~~G~~V 496 (631)
T PRK07769 471 -YGVYF-D-GELYITGRVKDLVIIDGRNH 496 (631)
T ss_pred -cccEE-C-CEEEEEcccccEEEECCeee
Confidence 99996 6 99999999999999999997
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=410.91 Aligned_cols=396 Identities=23% Similarity=0.330 Sum_probs=299.4
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECC-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
...++.++|+++++++|+++|+++.+ +.+||+||.++++++|+.|.++|+++|++|+++++|+.+++++++||++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~ 84 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAK 84 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 35689999999999999999999764 7899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC-CeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
+|++++|++|.++.+++.++++++++++++++.+..+.+.++...... ...++..+.... .......+.+.....
T Consensus 85 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 160 (517)
T PRK08008 85 IGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP----ADDGVSSFTQLKAQQ 160 (517)
T ss_pred cCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCc----ccccccCHHHHhccC
Confidence 999999999999999999999999999999999887777666543322 223333333211 011122333332222
Q ss_pred CCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHc
Q psy8155 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 439 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~ 439 (617)
+... .......++++++|+|||||||.||||+++|+++............+.++++++..+|++|..+....++.++..
T Consensus 161 ~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 239 (517)
T PRK08008 161 PATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSA 239 (517)
T ss_pred Cccc-cccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhc
Confidence 2111 112234678999999999999999999999999986544444445678899999999999988777888899999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee-ccCCCHHHHHHHHHHcCccccccc
Q psy8155 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 440 G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~-Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
|+++++.+++++..+++.++++++|++.++|++++.++..........++++.+. |++++++...+|.+.++. ++++.
T Consensus 240 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 318 (517)
T PRK08008 240 GATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGV-RLLTS 318 (517)
T ss_pred CcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCC-eEEee
Confidence 9999999999999999999999999999999999998876554444456777666 888999999999999886 79999
Q ss_pred ccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----cc---------------CCccchhhhH-----
Q psy8155 519 YGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----VE---------------MTGTYKLKKL----- 574 (617)
Q Consensus 519 YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----lP---------------~t~~GK~dr~----- 574 (617)
||+||+...+...... +. .....++..+|. ..+.++++ +| ....|+.+..
T Consensus 319 YG~tE~~~~~~~~~~~-~~-~~~~~~G~~~~g----~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~ 392 (517)
T PRK08008 319 YGMTETIVGIIGDRPG-DK-RRWPSIGRPGFC----YEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAK 392 (517)
T ss_pred ccccccccccccCCcc-cc-ccCCccccCCCC----cEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhh
Confidence 9999996544421100 00 000011111111 11222211 11 1112333222
Q ss_pred HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+..+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 393 ~~~~~g~--~~TGD-l~~~~~~-g~~~~~GR~~d~i~~~G~~i 431 (517)
T PRK08008 393 VLEADGW--LHTGD-TGYVDEE-GFFYFVDRRCNMIKRGGENV 431 (517)
T ss_pred cccCCCC--eeccc-eEEECCC-CcEEEeecccceEEeCCEEE
Confidence 2334677 77999 9999997 99999999999999999986
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=408.43 Aligned_cols=379 Identities=20% Similarity=0.312 Sum_probs=295.5
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
.+.++++++|+++|+++|++++++.+||+||+++++++|++|++ .|+++|++|+++++|+++++++++|++++|++++|
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEECCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 57899999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++..+++++++++++++++..+.+........ ...++.+.+ +.+........ .
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~~~----~ 143 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISITS--------------LKEIEDRKIDN----F 143 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEecc--------------hHhhhccCCCC----C
Confidence 9999999999999999999999999887766655433321 123333322 11111111111 1
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....++++++|+|||||||.||||+++|+++..........+++..+|+++..+|++|..++...++.++..|+++++.+
T Consensus 144 ~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~ 223 (496)
T PRK06839 144 VEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPR 223 (496)
T ss_pred CCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEcc
Confidence 13456899999999999999999999999998777766777889999999999999999887676788999999999999
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 525 (617)
.+++..+++.++++++|++.++|++++.++........+++++|.++ |+++++++.+.|.+. +. .+++.||+||+.
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~-~~~~~YG~tE~~ 301 (496)
T PRK06839 224 KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-GF-LFGQGFGMTETS 301 (496)
T ss_pred CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-CC-eeEeeccCCCCC
Confidence 99999999999999999999999999999988766666788999887 888999999999886 65 799999999996
Q ss_pred eEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHH----hhcCCCCCc
Q psy8155 526 AAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDL----QKEGFDPNV 585 (617)
Q Consensus 526 ~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L----~~~g~~~~~ 585 (617)
..+........... ...++..+|.. .+.+++. + |....|+.+.... ..+|| ++
T Consensus 302 ~~~~~~~~~~~~~~-~~~~G~p~~~~----~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~--~~ 374 (496)
T PRK06839 302 PTVFMLSEEDARRK-VGSIGKPVLFC----DYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGW--LC 374 (496)
T ss_pred cceEeccccccccc-CCCCcccCCCc----eEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCC--ee
Confidence 54331110000000 00011111111 1222211 1 2222233332222 24677 77
Q ss_pred cCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 586 IQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 586 TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
||| +|++|++ |+++++||.||+||++|+||
T Consensus 375 TGD-l~~~~~~-g~~~~~GR~~d~i~~~G~~v 404 (496)
T PRK06839 375 TGD-LARVDED-GFVYIVGRKKEMIISGGENI 404 (496)
T ss_pred ecc-eEEEcCC-CcEEEeccccceEEECCEEE
Confidence 999 9999997 99999999999999999986
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=412.90 Aligned_cols=402 Identities=18% Similarity=0.188 Sum_probs=289.7
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECC--ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~--~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
.+...++.++|+++++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++|++|+|+++|+.++++++|||+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 91 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRA 91 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 3456789999999999999999998753 47999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
|++++|++|.++.+++.+++++++++.+|++.............. ... .+.+...... ....... ........
T Consensus 92 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~----~~~~~~~-~~~~~~~~ 164 (534)
T PRK05852 92 DLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRW-WPL-TVNVGGDSGP----SGGTLSV-HLDAATEP 164 (534)
T ss_pred CcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccc-cce-eeeecccccc----ccccccc-ccccccCC
Confidence 999999999999999999999999999999865332111100000 001 1111110000 0000000 00000000
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCc
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGC 441 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~ 441 (617)
..........+++.++|+|||||||.||||+++|+++.+.+......+++.++|++++.+|++|..++...++.++..|+
T Consensus 165 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 244 (534)
T PRK05852 165 TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGG 244 (534)
T ss_pred CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCC
Confidence 00011111224688999999999999999999999999999988889999999999999999999998788899999999
Q ss_pred EEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC--CCccCceeeee--ccCCCHHHHHHHHHHcCcccc
Q psy8155 442 CVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP--EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQI 515 (617)
Q Consensus 442 ~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l 515 (617)
++++.+ .+++..+++.|+++++|++.++|+++..|.+..... ....+++|.+. |+++++++++.|.+.++. .+
T Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~-~v 323 (534)
T PRK05852 245 AVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAA-PV 323 (534)
T ss_pred eEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCC-Ch
Confidence 999865 478999999999999999999999999998765432 23467899887 788999999999999986 79
Q ss_pred cccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----cc------------CCccchhhhHHH---
Q psy8155 516 GEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----VE------------MTGTYKLKKLDL--- 576 (617)
Q Consensus 516 ~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----lP------------~t~~GK~dr~~L--- 576 (617)
++.||+||+...+....................+.......+.++++ +| .-..|+..+...
T Consensus 324 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~ 403 (534)
T PRK05852 324 VCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAA 403 (534)
T ss_pred hhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchh
Confidence 99999999864433110000000000000000000011112222221 11 111233332222
Q ss_pred -hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 577 -QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 577 -~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+|| ++||| +|++|+| |+++++||+||+||++|.||
T Consensus 404 ~~~~g~--~~TGD-~~~~d~d-G~l~~~gR~~d~i~~~G~~v 441 (534)
T PRK05852 404 NFTDGW--LRTGD-LGSLSAA-GDLSIRGRIKELINRGGEKI 441 (534)
T ss_pred hhcCCC--cccCc-eEEEeCC-CcEEEEecchhhEEECCEEE
Confidence 23577 77999 9999997 99999999999999999886
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=421.27 Aligned_cols=399 Identities=15% Similarity=0.110 Sum_probs=285.0
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC----C-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE----N-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~----~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
+...|+.++|.+.++++|+++|+.+. + ..+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 39 ~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 39 SDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34569999999999999999999642 1 24799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchH-HHHHHHHHhcCCCeEEEEeCCCCCCCC----CCCCCcC
Q psy8155 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELT-DAVQEISTSLGSNVKLFSWSPDTDSSS----SPVPRSQ 350 (617)
Q Consensus 276 lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~ 350 (617)
+||+++|+++||+++.++.+++.++++++++++++++.... +.+.......+....++++++...... .......
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 198 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTY 198 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEE
Confidence 99999999999999999999999999999999999987533 233222222333345666653211000 0000123
Q ss_pred CcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH-----hCCCCCCEEEEcCcchh
Q psy8155 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-----IGFRTKDRFYTPLPLYH 425 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~d~~l~~~p~~~ 425 (617)
++++++........ ......|+++++|+|||||||.||||++||+++...+...... .+++++|++++++|++|
T Consensus 199 ~~~~~~~~~~~~~~-~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H 277 (660)
T PLN02430 199 SWIDFLHMGKENPS-ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277 (660)
T ss_pred EHHHHHHhhccCCC-CCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHH
Confidence 34454433221111 1123468999999999999999999999999999877665432 25678999999999999
Q ss_pred hHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC------------------------
Q psy8155 426 TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE------------------------ 481 (617)
Q Consensus 426 ~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~------------------------ 481 (617)
..+.... +.++..|+++++... ++..+++.|+++++|++.++|.+++.+.+...
T Consensus 278 ~~~~~~~-~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (660)
T PLN02430 278 ILDRMIE-EYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW 355 (660)
T ss_pred HHHHHHH-HHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9887554 457899999988754 78899999999999999999999987764200
Q ss_pred ----------CCCCc-----------cCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CCCCCCC
Q psy8155 482 ----------KPEDK-----------AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLD 536 (617)
Q Consensus 482 ----------~~~~~-----------l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~ 536 (617)
....+ .+++|.++ |+++++++. +|.+.++...+++.||+||+.+.+. .+.....
T Consensus 356 ~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 434 (660)
T PLN02430 356 MNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIE-EFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCM 434 (660)
T ss_pred HhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHH-HHHHHhcCCCeeeecchhhhhhceEeeccccCCC
Confidence 00000 15788887 777999974 5666666546999999999865443 1111000
Q ss_pred HHHHHHHHhhcCCCCCc-----------------CcEEEEeecccCCccchhhhHHHh----hcCCCCCccCCeeEEEeC
Q psy8155 537 VSAVSEGIKKALPSYAR-----------------PLFIRCLREVEMTGTYKLKKLDLQ----KEGFDPNVIQDRLYYLSS 595 (617)
Q Consensus 537 ~~~l~~~l~~~Lp~~~~-----------------P~~~~~~~~lP~t~~GK~dr~~L~----~~g~~~~~TGD~lg~~d~ 595 (617)
. ..++..+|...+ ...+.+.. |....|+.++.+.+ ++|| ++||| +|++|+
T Consensus 435 ~----gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg--~~v~~GY~~~~e~t~~~~~dGw--~~TGD-ig~~d~ 505 (660)
T PLN02430 435 L----GTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRG--KCLFSGYYKNPELTEEVMKDGW--FHTGD-IGEILP 505 (660)
T ss_pred C----CCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecC--CCccccccCChHHhhhhhhccc--eeccc-eEEECC
Confidence 0 011111221100 01122222 22234555444443 3688 66999 999999
Q ss_pred CCceeeCCHHHHHHHhc-CCcCC
Q psy8155 596 KGVYEELTPEVYKDLVQ-GNIRL 617 (617)
Q Consensus 596 d~G~l~i~GR~~d~I~~-~G~~v 617 (617)
| |+|+|+||+||+||. +|+||
T Consensus 506 d-G~l~i~gR~kd~ik~~~G~~V 527 (660)
T PLN02430 506 N-GVLKIIDRKKNLIKLSQGEYV 527 (660)
T ss_pred C-CcEEEEEcccccEEcCCCcEE
Confidence 8 999999999999995 79986
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=415.48 Aligned_cols=381 Identities=16% Similarity=0.200 Sum_probs=283.0
Q ss_pred hhCCCceEEEECC--ceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChH
Q psy8155 219 VRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQN 295 (617)
Q Consensus 219 ~~~p~~~Al~~~~--~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~ 295 (617)
+++|+++|+++.. .++||+||+++++++|++|++ .|+++||+|+++++|+.++++++|||+++|++++|++|.++.+
T Consensus 50 ~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~ 129 (560)
T PLN02574 50 HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLG 129 (560)
T ss_pred cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHH
Confidence 6799999999863 479999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCe
Q psy8155 296 SLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375 (617)
Q Consensus 296 ~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (617)
++.++++++++++++++.+..+.+... ...++.++...... ........+.++........ ..+...++++
T Consensus 130 ~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 200 (560)
T PLN02574 130 EIKKRVVDCSVGLAFTSPENVEKLSPL------GVPVIGVPENYDFD-SKRIEFPKFYELIKEDFDFV--PKPVIKQDDV 200 (560)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHHhc------CCcEEecCcccccc-cCccCcccHHHHhhcCCccc--ccCCCCcCCE
Confidence 999999999999999998765554321 12233332211000 00011223333333322111 1223467899
Q ss_pred EEEEEccCCCCCCceEEechHHHHHHHHHHHH----HhCC-CCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCC
Q psy8155 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY----QIGF-RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 450 (617)
Q Consensus 376 a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d 450 (617)
++|+|||||||.||||+++|+++.+.+..+.. .+.. ..+++++..+|++|..++...++.++..|+++++.+.++
T Consensus 201 a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~ 280 (560)
T PLN02574 201 AAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFD 280 (560)
T ss_pred EEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 99999999999999999999999887765543 2222 356788999999999987666778889999999999999
Q ss_pred HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC-CCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceE
Q psy8155 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK-PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527 (617)
Q Consensus 451 ~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 527 (617)
+..+++.|+++++|++..+|+++..|++.... ...+++++|.++ |++++++++++|.+.+++..+++.||+||+...
T Consensus 281 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~ 360 (560)
T PLN02574 281 ASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAV 360 (560)
T ss_pred HHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCce
Confidence 99999999999999999999999999987543 344678898876 788999999999999976689999999998654
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhhHH-----HhhcCCCCCc
Q psy8155 528 ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKKLD-----LQKEGFDPNV 585 (617)
Q Consensus 528 v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~-----L~~~g~~~~~ 585 (617)
............ ...+...+|. ..+.+++. + |....|+.+... +..+|| ++
T Consensus 361 ~~~~~~~~~~~~-~~~vG~~~~~----~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~--~~ 433 (560)
T PLN02574 361 GTRGFNTEKLSK-YSSVGLLAPN----MQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGW--LR 433 (560)
T ss_pred eecCCCccccCC-CCceeeeCCC----cEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCC--cc
Confidence 431110000000 0001111111 11222220 1 222234443333 334677 77
Q ss_pred cCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 586 IQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 586 TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
||| +|++|+| |+++|+||+||+||++|+||
T Consensus 434 TGD-lg~~~~~-G~l~i~GR~~d~i~~~G~~v 463 (560)
T PLN02574 434 TGD-IAYFDED-GYLYIVDRLKEIIKYKGFQI 463 (560)
T ss_pred cce-EEEEECC-CeEEEEecchhheEECCEEE
Confidence 999 9999997 99999999999999999986
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=408.76 Aligned_cols=381 Identities=19% Similarity=0.235 Sum_probs=296.3
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
.++.+.|+++++++|+++|+++.++.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++||++++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLP 81 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++..+++++++++++++.+....... ....+.++..... .+..+ ...... ....
T Consensus 82 l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~-~~~~~~-~~~~ 143 (497)
T PRK06145 82 INYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-------ETPKIVIDAAAQA---------DSRRL-AQGGLE-IPPQ 143 (497)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-------ccceEEecCcccc---------hhHHH-hccCCC-CCCC
Confidence 9999999999999999999999998776543210 1122222221100 00011 100000 0111
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....++++++++|||||||.||||+++|+++..........+++..+++++...|++|..++....+.++..|+++++.+
T Consensus 144 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~ 223 (497)
T PRK06145 144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHR 223 (497)
T ss_pred CCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECC
Confidence 23467899999999999999999999999998877777778899999999999999999887666678899999999999
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 525 (617)
.+++..+++.++++++|++.++|+++..++.........++++|.++ |++++++++++|.+.++...+++.||+||++
T Consensus 224 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~ 303 (497)
T PRK06145 224 EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETC 303 (497)
T ss_pred cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccC
Confidence 99999999999999999999999999999987665555678898887 8889999999999999777899999999996
Q ss_pred eEEeC--CCCCCCHHHHHHHHhhcCCCCCcCcEEEEee------------cc----cCCccchhhhHHHh----hcCCCC
Q psy8155 526 AAILD--INKSLDVSAVSEGIKKALPSYARPLFIRCLR------------EV----EMTGTYKLKKLDLQ----KEGFDP 583 (617)
Q Consensus 526 ~~v~~--~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~------------~l----P~t~~GK~dr~~L~----~~g~~~ 583 (617)
..... .+...+. . ..+...+|.. .+.+++ ++ |....|+.++.... .++|
T Consensus 304 ~~~~~~~~~~~~~~--~-~~~G~~~~~~----~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~-- 374 (497)
T PRK06145 304 SGDTLMEAGREIEK--I-GSTGRALAHV----EIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDW-- 374 (497)
T ss_pred CcceeccCcccccc--C-CCcccCCCCc----eEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCC--
Confidence 64331 1111100 0 0112222221 122221 11 22223444433333 2567
Q ss_pred CccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 584 NVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 584 ~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|+| |+++++||.||+||++|+||
T Consensus 375 ~~TGD-l~~~~~~-g~l~~~GR~~~~i~~~G~~v 406 (497)
T PRK06145 375 FRSGD-VGYLDEE-GFLYLTDRKKDMIISGGENI 406 (497)
T ss_pred eeccc-eEEEcCC-CcEEEeccccceEEeCCeEE
Confidence 77999 9999998 99999999999999999986
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=409.15 Aligned_cols=381 Identities=22% Similarity=0.279 Sum_probs=292.2
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
...++.++|.+.+. ++++|+++.++.+||+||.++++++|++|+++ |++++++|+++++|+++++++++||+++|++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 80 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFEDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV 80 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEECCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 45678999988875 79999999999999999999999999999997 8999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++|+++.++.+++.++++++++++++++++..+.+..+. ....++.++. ..+.+.+.......
T Consensus 81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~l~~~~~~~- 143 (529)
T PRK07867 81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGVRVINVDS------------PAWADELAAHRDAE- 143 (529)
T ss_pred EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCceEEEecc------------ccHHHHhcccCCCC-
Confidence 999999999999999999999999999988776554432 2233333331 11222222211111
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......++++++|+|||||||.||||+++|+++..........++++++|+++..+|++|..++...++.++..|++++
T Consensus 144 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~ 223 (529)
T PRK07867 144 PPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIA 223 (529)
T ss_pred CCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence 11123467899999999999999999999999999988888889999999999999999999987777778999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee-ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~-Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
+.+++++..+++.++++++|++..+|+.+..++..........+++|.++ |+++++ ...+|.+.++. .++|.||+||
T Consensus 224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~-~~~~~~~~~g~-~l~~~YG~TE 301 (529)
T PRK07867 224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPG-DIARFARRFGC-VVVDGFGSTE 301 (529)
T ss_pred ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChH-HHHHHHHHhCC-cEEEeecccc
Confidence 99999999999999999999999999999999876554333456888777 555655 46788888876 7999999999
Q ss_pred cceEEeCCCCCCCHHHHHHHHhhcCCCC-------Cc------------------CcEEEEeecccCCccchhhhHHHh-
Q psy8155 524 GMAAILDINKSLDVSAVSEGIKKALPSY-------AR------------------PLFIRCLREVEMTGTYKLKKLDLQ- 577 (617)
Q Consensus 524 ~~~~v~~~~~~~~~~~l~~~l~~~Lp~~-------~~------------------P~~~~~~~~lP~t~~GK~dr~~L~- 577 (617)
+...+....... . ..+...+|.. .. ...+.++. -|....|+.+.....
T Consensus 302 ~~~~~~~~~~~~-~----~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~-g~~~~~gy~~~~~~~~ 375 (529)
T PRK07867 302 GGVAITRTPDTP-P----GALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTA-GPGGFEGYYNDPEADA 375 (529)
T ss_pred cccccccCCCCC-C----CCcCCCCCCEEEEECCCCCCCCCCccccccccccCCcceEEEEec-CCcccccccCChHhhh
Confidence 864443211100 0 0011111110 00 11111101 122234554443333
Q ss_pred ---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 376 ~~~~~g~--~~TGD-~~~~~~~-g~l~~~GR~~d~i~~~G~~v 414 (529)
T PRK07867 376 ERMRGGV--YWSGD-LAYRDAD-GYAYFAGRLGDWMRVDGENL 414 (529)
T ss_pred hhhcCCe--Eeecc-EEEEeCC-CcEEEeccccCeEEECCEEe
Confidence 3567 77999 9999997 99999999999999999986
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=421.92 Aligned_cols=394 Identities=18% Similarity=0.147 Sum_probs=286.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECC------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFEN------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~ 279 (617)
...++.++|+++++++|+++|+++.+ +.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+
T Consensus 47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 126 (624)
T PRK12582 47 YPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM 126 (624)
T ss_pred cccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence 45689999999999999999998753 689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCh-----HHHHHHHHhcCceEEEEccch--HHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCc
Q psy8155 280 KLGVITALINHNLRQ-----NSLLHCINIAGVSAFIYGAEL--TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352 (617)
Q Consensus 280 ~aG~~~vpldp~~p~-----~~l~~il~~~~~~~vl~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 352 (617)
++|++++|++|.++. +++.+++++++++++|+++.. ...+..+ .. ...+++.++..... .....+
T Consensus 127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~~-----~~~~~~ 198 (624)
T PRK12582 127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAAL-DL--LDVTVVHVTGPGEG-----IASIAF 198 (624)
T ss_pred HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhh-hh--cCceEEEEcCCCcc-----cccccH
Confidence 999999999999985 899999999999999998642 1112111 11 12344444432110 012233
Q ss_pred chhhccCCCC-CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCC---CCEEEEcCcchhhHH
Q psy8155 353 SPLLSEVPTS-PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT---KDRFYTPLPLYHTAG 428 (617)
Q Consensus 353 ~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~d~~l~~~p~~~~~~ 428 (617)
.++....... .........++++++|+|||||||.||||+++|+++.+.+......+.... +++++.++|++|..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g 278 (624)
T PRK12582 199 ADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278 (624)
T ss_pred HHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHh
Confidence 3333322111 011112346789999999999999999999999999988777666555554 589999999999998
Q ss_pred HHHHHHHHhHcCcEEEEcCC-CCH---HHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC----CCccCceeeee--ccCC
Q psy8155 429 GAMCIGQALIFGCCVVIRKK-FSA---SNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP----EDKAHNVRLMF--GNGL 498 (617)
Q Consensus 429 ~~~~~~~~L~~G~~lvi~~~-~d~---~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~~~l~~lr~v~--Ge~l 498 (617)
+...++.+|..|+++++.+. +++ ..+++.++++++|++..+|++++.|++..... ...+++||.++ |+++
T Consensus 279 ~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l 358 (624)
T PRK12582 279 GNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATL 358 (624)
T ss_pred HHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCC
Confidence 76777889999999999763 343 35677789999999999999999887543221 12467899887 7889
Q ss_pred CHHHHHHHHHHc----C-cccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCCc-------CcEEEEeecccC
Q psy8155 499 RPQIWSEFVDRF----R-IAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYAR-------PLFIRCLREVEM 565 (617)
Q Consensus 499 ~~~~~~~~~~~~----~-~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~-------P~~~~~~~~lP~ 565 (617)
++++.++|.+.+ + ...++|.||+||+...+.. ....... ..++..+|...+ +..+.+.+ |.
T Consensus 359 ~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~----~svG~p~pg~~v~i~~~G~~GEl~vrg--~~ 432 (624)
T PRK12582 359 SDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERV----GLIGLPLPGVELKLAPVGDKYEVRVKG--PN 432 (624)
T ss_pred CHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCC----CCCCcCCCCcEEEEccCCCceEEEEEC--Cc
Confidence 999999998863 3 2369999999999655441 1111000 122333443321 11222222 33
Q ss_pred CccchhhhH-----HHhhcCCCCCccCCeeEEE-e---CCCceeeCCHHHHHHHh-cCCcCC
Q psy8155 566 TGTYKLKKL-----DLQKEGFDPNVIQDRLYYL-S---SKGVYEELTPEVYKDLV-QGNIRL 617 (617)
Q Consensus 566 t~~GK~dr~-----~L~~~g~~~~~TGD~lg~~-d---~d~G~l~i~GR~~d~I~-~~G~~v 617 (617)
...|+.++. .+.++|| ++||| +|++ | ++ |+++|+||+||+|| .+|+||
T Consensus 433 v~~GY~~~p~~t~~~f~~dgw--~~TGD-lg~~~d~~~~~-g~l~i~GR~~d~i~~~~G~~i 490 (624)
T PRK12582 433 VTPGYHKDPELTAAAFDEEGF--YRLGD-AARFVDPDDPE-KGLIFDGRVAEDFKLSTGTWV 490 (624)
T ss_pred ccccccCCccchhhhcCccCC--ccccc-eEEecCCcCCC-CceEEeccchhhEecCCCcEe
Confidence 334555433 3345788 77999 9999 4 44 99999999999999 589876
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=409.24 Aligned_cols=395 Identities=21% Similarity=0.233 Sum_probs=305.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|..+++++|+++|+.+.++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v 89 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHV 89 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+++.++.+++..+++.+++++++++.+..+.+....+........+...... .........+.+.....+... .
T Consensus 90 ~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~ 164 (523)
T PRK08316 90 PVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGG---REAPGGWLDFADWAEAGSVAE--P 164 (523)
T ss_pred ecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccc---cccccchhhHHHHHhcCCCcc--C
Confidence 99999999999999999999999999988777665544332111111100000 000111233333332222111 1
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.....++++++++|||||||.||+|.++|+++.+........+++.++++++..+|++|..++...++.++..|+++++.
T Consensus 165 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~ 244 (523)
T PRK08316 165 DVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVIL 244 (523)
T ss_pred ccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEe
Confidence 23456789999999999999999999999999998888888889999999999999999988755566789999999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 524 (617)
+..+++.+++.|+++++|++.++|+++..+++.......+++++|.+. |+.++.++.+.|.+.++...+++.||+||+
T Consensus 245 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 324 (523)
T PRK08316 245 DAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEI 324 (523)
T ss_pred cCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeeccccc
Confidence 889999999999999999999999999999988766666788999886 788999999999999876689999999998
Q ss_pred ceEEeC--CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh----hcCCC
Q psy8155 525 MAAILD--INKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ----KEGFD 582 (617)
Q Consensus 525 ~~~v~~--~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~----~~g~~ 582 (617)
+..... ....... ...++..++.. .+.++++ + |....|+.++..+. ..||
T Consensus 325 ~~~~~~~~~~~~~~~---~~~~G~~~~~~----~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~- 396 (523)
T PRK08316 325 APLATVLGPEEHLRR---PGSAGRPVLNV----ETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGW- 396 (523)
T ss_pred CccccccCccccccc---cCCcccCCCCc----EEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCC-
Confidence 543331 1110000 00111222211 1112211 1 12223333333333 3567
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|+| |+++++||.||+||++|+||
T Consensus 397 -~~TGD-l~~~~~~-g~l~i~gR~~~~i~~~G~~i 428 (523)
T PRK08316 397 -FHSGD-LGVMDEE-GYITVVDRKKDMIKTGGENV 428 (523)
T ss_pred -eeccc-eEEEcCC-ceEEEecccccEEEeCCeEE
Confidence 77999 9999997 99999999999999999986
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=413.85 Aligned_cols=399 Identities=18% Similarity=0.204 Sum_probs=299.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++++++++++|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 110 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVV 110 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCC---------------------CCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS---------------------SSP 345 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~ 345 (617)
|++|.++.+++.+++++++++++|+++.....+.++...... ..++.++...... ...
T Consensus 111 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (573)
T PRK05605 111 EHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPL-ETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGP 189 (573)
T ss_pred ecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcccc-ceeEeeecccccccccccccccccccccccccccccC
Confidence 999999999999999999999999988776665554332221 1233222110000 000
Q ss_pred CCCcCCcchhhccCCCC--CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC-C-CCCCEEEEcC
Q psy8155 346 VPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-F-RTKDRFYTPL 421 (617)
Q Consensus 346 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~-~~~d~~l~~~ 421 (617)
..+...|.++....... .........++++++++|||||||.||||+++|+++...+......+. + ..+++++...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (573)
T PRK05605 190 APGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAAL 269 (573)
T ss_pred CCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEec
Confidence 01122333332221111 001112346789999999999999999999999999887765544332 2 3478999999
Q ss_pred cchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCC
Q psy8155 422 PLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLR 499 (617)
Q Consensus 422 p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~ 499 (617)
|++|..++...++.++..|+++++.+..+++.+++.|+++++|++.++|++++.|++........++++|.++ |++++
T Consensus 270 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~ 349 (573)
T PRK05605 270 PMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALP 349 (573)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCC
Confidence 9999988877788899999999999989999999999999999999999999999987766666788999887 78899
Q ss_pred HHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec------c----------
Q psy8155 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE------V---------- 563 (617)
Q Consensus 500 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~------l---------- 563 (617)
+++.++|.+.++. .+++.||+||+...+.......... ...++..+|.+ .+.+++. +
T Consensus 350 ~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~--~~~~G~~~~~~----~~~i~d~~~~~~~~~~g~~Gel~v 422 (573)
T PRK05605 350 VSTVELWEKLTGG-LLVEGYGLTETSPIIVGNPMSDDRR--PGYVGVPFPDT----EVRIVDPEDPDETMPDGEEGELLV 422 (573)
T ss_pred HHHHHHHHHHhCC-CeecccccchhchhhhcCCcccCCc--CCccccCCCCC----EEEEEcCCCCCccCCCCCeeEEEE
Confidence 9999999988875 7999999999865444211100000 00122222221 1222210 1
Q ss_pred --cCCccchhhhHHHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 --EMTGTYKLKKLDLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 --P~t~~GK~dr~~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++....+ .|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 423 ~~~~~~~gy~~~~~~~~~~~~~g~--~~TGD-~~~~~~~-g~l~i~gR~dd~i~~~G~~v 478 (573)
T PRK05605 423 RGPQVFKGYWNRPEETAKSFLDGW--FRTGD-VVVMEED-GFIRIVDRIKELIITGGFNV 478 (573)
T ss_pred ecCchhhhhcCChhHhhhcccCCC--cccCC-EEEEcCC-CcEEEEeccccceeeCCEEE
Confidence 222334444433333 455 78999 9999997 99999999999999999986
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=408.71 Aligned_cols=371 Identities=21% Similarity=0.294 Sum_probs=287.9
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
++++++|++++.++|+++|+++.++.+||+||+++++++|++|.+.|+++|++|+++++++.++++++||++++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVL 81 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeCCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++..+++++++++++++........... . + .+.++.... .......
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------~-~-----------------~~~~~~~~~-~~~~~~~ 135 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-------S-V-----------------KFAELMNGP-KEEAEIQ 135 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-------c-c-----------------cHHHHhhcc-cccCCCC
Confidence 999999999999999999999999877654432210 0 0 011111111 0111111
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....++++++++|||||||.||||+++|+++...+......++++++|++++.+|++|..++ ..++.++..|+++++.+
T Consensus 136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~ 214 (483)
T PRK03640 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVE 214 (483)
T ss_pred CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecC
Confidence 23467899999999999999999999999998888777778899999999999999999886 55788999999999999
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 525 (617)
..++..+++.|+++++|++.++|+++..|++..... ....++|.++ |+++++.+++.+.+. +. ++++.||+||++
T Consensus 215 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~-~~~~~YG~tE~~ 291 (483)
T PRK03640 215 KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK-GI-PVYQSYGMTETA 291 (483)
T ss_pred CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh-CC-CeeeeeccCccc
Confidence 999999999999999999999999999998654332 2346888887 888999999988774 54 799999999985
Q ss_pred eEEe--CCCCCCCHHHHHHHHhhcCCCCC-------------cCcEEEEeecccCCccchhhhHHHh----hcCCCCCcc
Q psy8155 526 AAIL--DINKSLDVSAVSEGIKKALPSYA-------------RPLFIRCLREVEMTGTYKLKKLDLQ----KEGFDPNVI 586 (617)
Q Consensus 526 ~~v~--~~~~~~~~~~l~~~l~~~Lp~~~-------------~P~~~~~~~~lP~t~~GK~dr~~L~----~~g~~~~~T 586 (617)
..+. ........ ...++..+|... .+..+.+- -|....|+..+.... .+|| ++|
T Consensus 292 ~~~~~~~~~~~~~~---~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~--g~~~~~gy~~~~~~~~~~~~~~~--~~t 364 (483)
T PRK03640 292 SQIVTLSPEDALTK---LGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVK--GPNVTKGYLNREDATRETFQDGW--FKT 364 (483)
T ss_pred ccccccCccccccc---CCCcccccCCcEEEEecCCCcCCCCCceEEEEE--CcchhhhhcCCHHHHHHHHhcCC--eec
Confidence 4433 11100000 000111121111 11111111 122223443333322 4567 779
Q ss_pred CCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 587 QDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 587 GD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|| ++++|+| |++++.||+||+||++|+||
T Consensus 365 GD-l~~~~~~-g~l~~~GR~~~~i~~~G~~v 393 (483)
T PRK03640 365 GD-IGYLDEE-GFLYVLDRRSDLIISGGENI 393 (483)
T ss_pred cc-eEEEcCC-CCEEEeecccCeEEeCCEEE
Confidence 99 9999998 99999999999999999986
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=414.38 Aligned_cols=389 Identities=17% Similarity=0.212 Sum_probs=282.4
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
..+.++.+.|.++|+++|+++|+++. ++.+||+||+++++++|+.|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 11 ~~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G 90 (540)
T PRK05857 11 QLPSTVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLG 90 (540)
T ss_pred cCCcchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 34568999999999999999999864 4689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|+|+.++.+++.++++.++++++++++........+.... ....++.++..... ......... .
T Consensus 91 ~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~---~ 158 (540)
T PRK05857 91 AIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEAL-HSIPVIAVDIAAVT--------RESEHSLDA---A 158 (540)
T ss_pred eEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccc-cccceeEeeccccc--------ccccccccc---c
Confidence 99999999999999999999999999999876543222111111 11223333321100 000000000 0
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
.+.......+++++|++|||||||.||||+++|+++.+....... .+.+..+++++..+|++|..++ +..+.+++
T Consensus 159 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l-~~~~~~l~ 237 (540)
T PRK05857 159 SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGL-WWILTCLM 237 (540)
T ss_pred ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchH-HHHHHHhh
Confidence 011112346789999999999999999999999999876543322 2356678899999999999886 56788999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.|+++++ ...++..+++.|+++++|++.++|++++.|+........+++++|.++ |++++....+ |.+.++. +++
T Consensus 238 ~G~~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g~-~i~ 314 (540)
T PRK05857 238 HGGLCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATGV-RTA 314 (540)
T ss_pred cceeEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhCC-eee
Confidence 9999876 456889999999999999999999999999887665556788999876 7778877764 6677775 799
Q ss_pred ccccccccceEEe-CCCCCCCHHHHH-HHHhhcCCCCCcCcEEEEeec------------------c----cCCccchhh
Q psy8155 517 EFYGATEGMAAIL-DINKSLDVSAVS-EGIKKALPSYARPLFIRCLRE------------------V----EMTGTYKLK 572 (617)
Q Consensus 517 n~YG~TE~~~~v~-~~~~~~~~~~l~-~~l~~~Lp~~~~P~~~~~~~~------------------l----P~t~~GK~d 572 (617)
+.||+||+....+ .+.......... ..++..+|. ..+.++++ + |.-..|+.+
T Consensus 315 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g----~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~ 390 (540)
T PRK05857 315 QVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPG----VDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWN 390 (540)
T ss_pred cccCCCcCCceeeecccccccccccccCCcCcccCC----cEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhC
Confidence 9999999865433 111100000000 011222221 12222221 0 111123333
Q ss_pred hHHHh----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 573 KLDLQ----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 573 r~~L~----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..... .+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 391 ~~~~t~~~~~~g~--~~TGD-lg~~d~~-g~l~~~GR~~~~ik~~G~~v 435 (540)
T PRK05857 391 NPERTAEVLIDGW--VNTGD-LLERRED-GFFYIKGRSSEMIICGGVNI 435 (540)
T ss_pred CccchhhhcCCCc--eeccc-eEEEcCC-ceEEEeccccccEecCCEEE
Confidence 32222 3566 77999 9999997 99999999999999999986
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=412.89 Aligned_cols=399 Identities=21% Similarity=0.311 Sum_probs=300.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEE--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
..+.++.++|.++++++|+++|+++ .++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G 92 (559)
T PRK08315 13 LLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIG 92 (559)
T ss_pred hhhccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhC
Confidence 3456899999999999999999988 46789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhc-------------CCCeEEEEeCCCCCCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSL-------------GSNVKLFSWSPDTDSSSS 344 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~ 344 (617)
++++|++|.++.+++..+++.+++++++++.+.. +.+.+....+ +....++..+....
T Consensus 93 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 168 (559)
T PRK08315 93 AILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKH---- 168 (559)
T ss_pred eEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCC----
Confidence 9999999999999999999999999999987542 2222222221 11223333332110
Q ss_pred CCCCcCCcchhhccCCC----CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEc
Q psy8155 345 PVPRSQALSPLLSEVPT----SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP 420 (617)
Q Consensus 345 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 420 (617)
.....+.++...... ..........+++++|++|||||||.||||.++|+++.+.+......+++.++|+++..
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~ 246 (559)
T PRK08315 169 --PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIP 246 (559)
T ss_pred --cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 011223333221100 00111123467899999999999999999999999999999988889999999999999
Q ss_pred CcchhhHHHHHHHHHHhHcCcEEEE-cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccC
Q psy8155 421 LPLYHTAGGAMCIGQALIFGCCVVI-RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNG 497 (617)
Q Consensus 421 ~p~~~~~~~~~~~~~~L~~G~~lvi-~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~ 497 (617)
.|++|..+++..++.+|..|+++++ ...+++..+++.++++++|++.++|+++..++.........++++|.++ |++
T Consensus 247 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~ 326 (559)
T PRK08315 247 VPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSP 326 (559)
T ss_pred cCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCC
Confidence 9999999988888999999999995 4568999999999999999999999999999887666566788999766 888
Q ss_pred CCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccC-------
Q psy8155 498 LRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEM------- 565 (617)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~------- 565 (617)
++++++++|.+.++..+++|.||+||+...............-...++..+|. ..+.+++. +|.
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~----~~v~i~d~~~~~~~~~g~~GEl~ 402 (559)
T PRK08315 327 CPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPH----LEVKIVDPETGETVPRGEQGELC 402 (559)
T ss_pred CCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCC----cEEEEEcCccCCcCCCCCceEEE
Confidence 99999999999998767999999999965443111100000000001111221 11222221 111
Q ss_pred -----CccchhhhHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 566 -----TGTYKLKKLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 566 -----t~~GK~dr~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...|+.+... +...+| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 403 v~g~~~~~gy~~~~~~~~~~~~~~~~--~~TGD-~~~~~~d-g~~~~~GR~d~~i~~~G~~v 460 (559)
T PRK08315 403 TRGYSVMKGYWNDPEKTAEAIDADGW--MHTGD-LAVMDEE-GYVNIVGRIKDMIIRGGENI 460 (559)
T ss_pred EECchhhhhhcCChhHHhhcCCCCCC--EEccc-eEEEcCC-ceEEEEeeccceEEECCEEE
Confidence 1123332222 224566 78999 9999997 99999999999999999986
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=406.85 Aligned_cols=393 Identities=20% Similarity=0.283 Sum_probs=298.6
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECC-ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFEN-TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~-~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
..++.++|+++++++|+++|+++.+ +.+||+||+++++++|++|++.|+++|++|+++++|+++++++++||+++|+++
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 101 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS 101 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4689999999999999999999875 799999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccc-----hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAE-----LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
+|++|.++.+++.++++++++++++++.. ..+.+..+....+....++.++..... .....+.++....+
T Consensus 102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 176 (547)
T PRK06087 102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPA-----TSSLSLSQIIADYE 176 (547)
T ss_pred eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCC-----cCccCHHHHhccCC
Confidence 99999999999999999999999999753 233444444444443455555432211 01123333333221
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
... ......++++++|+|||||||.||||+++|+++..........+++.++|++++.+|++|..++...++.++..|
T Consensus 177 ~~~--~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g 254 (547)
T PRK06087 177 PLT--TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254 (547)
T ss_pred ccc--CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcC
Confidence 111 112346789999999999999999999999999988888888889999999999999999998877888999999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 441 ~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
+++++.+.+++..+++.|+++++|++..+|+.+..++........+++++|.++ |+++++++.+.+.+. +. ++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~-~l~~~ 332 (547)
T PRK06087 255 ARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-GI-KLLSV 332 (547)
T ss_pred CEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-CC-cEEEE
Confidence 999999999999999999999999999887777667765554455678999887 888999999988764 54 79999
Q ss_pred ccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHH-----Hh
Q psy8155 519 YGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLD-----LQ 577 (617)
Q Consensus 519 YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~-----L~ 577 (617)
||+||+................ ......+|. ..+.++++ + |....|+++... +.
T Consensus 333 YG~TE~~~~~~~~~~~~~~~~~-~~~G~~~~~----~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 407 (547)
T PRK06087 333 YGSTESSPHAVVNLDDPLSRFM-HTDGYAAAG----VEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALD 407 (547)
T ss_pred ecccccCCccccCCCcchhhcC-CcCCccCCC----ceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhC
Confidence 9999985433311111000000 000111111 11222221 1 222233333322 33
Q ss_pred hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| ++||| ++++|++ |+++|.||.||+||.+|+||
T Consensus 408 ~~g~--~~TGD-l~~~~~~-g~l~i~GR~~d~i~~~G~~v 443 (547)
T PRK06087 408 EEGW--YYSGD-LCRMDEA-GYIKITGRKKDIIVRGGENI 443 (547)
T ss_pred CCCC--cCcCc-eEEECCC-CCEEEEecchhhhhcCCEEE
Confidence 5677 77999 9999998 99999999999999999875
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=405.46 Aligned_cols=397 Identities=18% Similarity=0.170 Sum_probs=301.4
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
+++++|.+.++++|+++|+.+.++.+||+||.++++++|++|++.|+++|++|+++++|+.+++++++||+++|++++|+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 80 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPI 80 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
++.++.+++..+++.+++++++++.+..+.+......++....++.+++...... .......|+++....... ...
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~ 156 (515)
T TIGR03098 81 NPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE-GGGESPSWPKLLALGDAD---PPH 156 (515)
T ss_pred CCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC-CccccccHHHhhcccccc---ccC
Confidence 9999999999999999999999998776666555444444445555553321100 011122344443322111 112
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
....+++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|+.++ ..++.++..|+++++.+.
T Consensus 157 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~ 235 (515)
T TIGR03098 157 PVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDY 235 (515)
T ss_pred CCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCC
Confidence 3356789999999999999999999999999988888888899999999999999999886 568899999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 449 ~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
+++..+++.++++++|++.++|+++..|...... ...++++|.++ |+++++++.+++.+.++...+++.||+||+..
T Consensus 236 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 314 (515)
T TIGR03098 236 LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFR 314 (515)
T ss_pred CCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccc
Confidence 9999999999999999999999999999875332 23567888887 88899999999999997668999999999853
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeecccCCccchhhhHH-----Hhhc----CC--
Q psy8155 527 AILDINKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLREVEMTGTYKLKKLD-----LQKE----GF-- 581 (617)
Q Consensus 527 ~v~~~~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~lP~t~~GK~dr~~-----L~~~----g~-- 581 (617)
............ ...++..+|... .+..+.+.. |....|+.+... +... ||
T Consensus 315 ~~~~~~~~~~~~--~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
T TIGR03098 315 STYLPPEEVDRR--PDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRG--ALVAMGYWNDPEKTAERFRPLPPRPGELH 390 (515)
T ss_pred eEecccccccCC--CCCcceecCCCEEEEECCCCCCCCCCCceEEEEcC--chhhccccCCchhhhhhhhccCCcccccc
Confidence 322111100000 001112222111 011111111 222233332221 1111 11
Q ss_pred ---CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 ---DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ---~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|++||| +|++|+| |++++.||.||+||++|+||
T Consensus 391 ~~~~~~~TGD-~~~~~~~-g~l~~~GR~~d~i~~~G~~v 427 (515)
T TIGR03098 391 LPELAVWSGD-TVRRDEE-GFLYFVGRRDEMIKTSGYRV 427 (515)
T ss_pred ccccceeccc-eEEEcCC-ceEEEEeccccceecCCEEe
Confidence 1366999 9999997 99999999999999999986
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=408.83 Aligned_cols=390 Identities=16% Similarity=0.193 Sum_probs=293.5
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
...|+.+++.+.++++|+++|+.+. ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 26 ~~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 105 (546)
T PLN02330 26 DKLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGG 105 (546)
T ss_pred CCCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCc
Confidence 4578999999999999999999974 67999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCC
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
+++|+|+.++.+++.+++++++++++++++...+.+... ...++.++.... .....+.+++.......
T Consensus 106 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~------~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~ 173 (546)
T PLN02330 106 VFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGL------GLPVIVLGEEKI------EGAVNWKELLEAADRAG 173 (546)
T ss_pred EeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhc------CCcEEEecCCCC------CCcccHHHHHhhccccC
Confidence 999999999999999999999999999998877665432 123444442211 11233444443321111
Q ss_pred -CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCC----CCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 364 -PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR----TKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 364 -~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~----~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
........++++++|+|||||||.||||+++|+++...+... .++.. ..++++...|++|..++...++.+|.
T Consensus 174 ~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~ 251 (546)
T PLN02330 174 DTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLR 251 (546)
T ss_pred cccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhh
Confidence 111123457899999999999999999999999998766532 23333 34688999999999887667788999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccC--ceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--NVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~--~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
.|+++++.+.+++..+++.++++++|++..+|+++..++.........+. ++|.++ |++++++++++|.+.++...
T Consensus 252 ~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~ 331 (546)
T PLN02330 252 NKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQ 331 (546)
T ss_pred cCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999886554444444 466665 88899999999999996668
Q ss_pred ccccccccccceEEeCCCCCCCHHHH--HHHHhhcCCCCCcCcEEEEee-----cccCC------------ccchhhhH-
Q psy8155 515 IGEFYGATEGMAAILDINKSLDVSAV--SEGIKKALPSYARPLFIRCLR-----EVEMT------------GTYKLKKL- 574 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~~~~~~~~~~l--~~~l~~~Lp~~~~P~~~~~~~-----~lP~t------------~~GK~dr~- 574 (617)
+++.||+||+.+.............+ ...++..+|.. .+.+++ .+|.. ..|+.++.
T Consensus 332 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~----~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~ 407 (546)
T PLN02330 332 VQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNL----EVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKE 407 (546)
T ss_pred EEecccccccccceecCCCccccccccccCccccccCCc----EEEEEeCCCCccCCCCCceEEEEecchhhhhhccCcc
Confidence 99999999986544321111000000 00111112211 122222 12222 22333222
Q ss_pred ----HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 ----DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ----~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+.++|| ++||| +|++++| |+++++||.||+||++|+||
T Consensus 408 ~~~~~~~~~g~--~~TGD-~~~~~~d-G~l~~~GR~~d~i~~~G~~v 450 (546)
T PLN02330 408 ETDRTIDEDGW--LHTGD-IGYIDDD-GDIFIVDRIKELIKYKGFQV 450 (546)
T ss_pred chhhhccCCCc--eeccc-EEEEeCC-CcEEEEechHHhhhcCCEEE
Confidence 2345688 77999 9999997 99999999999999999986
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=403.15 Aligned_cols=384 Identities=21% Similarity=0.271 Sum_probs=300.1
Q ss_pred CCCHHHHHHHHHhhCCCceEEEE-CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMF-ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
..++.+++.+++ .+|+++|+.+ .++.+||+||.++++++|++|++.|+++|++|+++++|+.+++++++|++++|+++
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~ 80 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 357899999999 9999999998 57789999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|+++.++.+++..+++.++++++++++...+.+......... ..++.++.... ..+.+.....+.. .
T Consensus 81 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~--~ 148 (504)
T PRK07514 81 LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGA-PHVETLDADGT---------GSLLEAAAAAPDD--F 148 (504)
T ss_pred EECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCC-ceEEEecCCCc---------ccHHHhhhhcCcc--c
Confidence 9999999999999999999999999998877766555433221 22444443211 1111111111111 1
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
......+++++||+|||||||.||||+++|+++.+.+......+++.++|++++..|++|..++...++.+++.|+++++
T Consensus 149 ~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 228 (504)
T PRK07514 149 ETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIF 228 (504)
T ss_pred CcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEE
Confidence 11234678999999999999999999999999999988888889999999999999999999887788899999999999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 446 ~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
.+..++..+++.+ .++|++..+|+++..++.........++++|.++ |+++++++.++|.+.++. ++++.||+||
T Consensus 229 ~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE 305 (504)
T PRK07514 229 LPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGH-AILERYGMTE 305 (504)
T ss_pred CCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCC-cceeeccccc
Confidence 9999999999999 4799999999999999987666666788999887 778999999999999886 7999999999
Q ss_pred cceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccchhhhHH-----HhhcCC
Q psy8155 524 GMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTYKLKKLD-----LQKEGF 581 (617)
Q Consensus 524 ~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~GK~dr~~-----L~~~g~ 581 (617)
+............ ........+|. ..+.+++ + . |....|+.+... +.++||
T Consensus 306 ~~~~~~~~~~~~~---~~~~~G~~~~~----~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~ 378 (504)
T PRK07514 306 TNMNTSNPYDGER---RAGTVGFPLPG----VSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGF 378 (504)
T ss_pred ccccccCCccccc---cCcccccCCCC----cEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCC
Confidence 8654432211000 00011112221 1222222 0 1 222334443322 333566
Q ss_pred CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|++ |++++.||.||+||++|+||
T Consensus 379 --~~TGD-l~~~~~~-g~~~~~GR~~~~i~~~G~~i 410 (504)
T PRK07514 379 --FITGD-LGKIDER-GYVHIVGRGKDLIISGGYNV 410 (504)
T ss_pred --eeecc-eEEEcCC-ccEEEeccccceEEeCCeEE
Confidence 78999 9999997 99999999999999999986
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=410.39 Aligned_cols=398 Identities=22% Similarity=0.310 Sum_probs=299.1
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
...+++++|.+.++++|+++|+++. ++.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 16 ~~~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~ 95 (558)
T PRK12583 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95 (558)
T ss_pred ccCcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCC
Confidence 3468999999999999999999884 67899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHh-------------cCCCeEEEEeCCCCCCCCCC
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTS-------------LGSNVKLFSWSPDTDSSSSP 345 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~ 345 (617)
+++|+++.++.+++.+++++++++++++++... ..+...... .+....++..+....
T Consensus 96 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (558)
T PRK12583 96 ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP----- 170 (558)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC-----
Confidence 999999999999999999999999999976432 222222111 111112222221110
Q ss_pred CCCcCCcchhhccCCCC----CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcC
Q psy8155 346 VPRSQALSPLLSEVPTS----PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPL 421 (617)
Q Consensus 346 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 421 (617)
.....|++........ .........++++++++|||||||.||||.++|+++.+.+......+++.++|+++...
T Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~ 249 (558)
T PRK12583 171 -PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPV 249 (558)
T ss_pred -ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEec
Confidence 1122233322211110 01111234578999999999999999999999999999888888889999999999999
Q ss_pred cchhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCC
Q psy8155 422 PLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGL 498 (617)
Q Consensus 422 p~~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l 498 (617)
|++|..+.+..++.++..|+++++.. ..++..+++.++++++|++..+|+++..++........+++++|.++ |+++
T Consensus 250 p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~ 329 (558)
T PRK12583 250 PLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPC 329 (558)
T ss_pred CchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCC
Confidence 99999998888999999999999754 57999999999999999999999999988877655555688999876 8889
Q ss_pred CHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c-----------
Q psy8155 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V----------- 563 (617)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l----------- 563 (617)
++++++++.+.++.+.+++.||+||+...............-...++..+|. ..+.+++. +
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~----~~~~i~d~~~~~~~~g~~Gel~v~ 405 (558)
T PRK12583 330 PIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPH----LEVKVVDPDGATVPRGEIGELCTR 405 (558)
T ss_pred CHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCC----CeEEEECCCCCCCCCCCeeEEEEE
Confidence 9999999999998767999999999965444211100000000001111111 11222221 1
Q ss_pred -cCCccchhhhHHHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 -EMTGTYKLKKLDLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 -P~t~~GK~dr~~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.+..... .++| ++||| +|++|+| |++++.||.||+||++|.||
T Consensus 406 g~~~~~gy~~~~~~~~~~~~~~~~--~~TGD-l~~~~~d-g~l~i~GR~~~~i~~~G~~v 461 (558)
T PRK12583 406 GYSVMKGYWNNPEATAESIDEDGW--MHTGD-LATMDEQ-GYVRIVGRSKDMIIRGGENI 461 (558)
T ss_pred eCccchhhcCChHHHHhhcCCCCC--eeccc-eEEECCC-ccEEEEecccceeEECCEEe
Confidence 12223443333332 4567 77999 9999997 99999999999999999886
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=417.08 Aligned_cols=386 Identities=13% Similarity=0.098 Sum_probs=279.1
Q ss_pred CCCceEEEECC-----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChH
Q psy8155 221 SPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQN 295 (617)
Q Consensus 221 ~p~~~Al~~~~-----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~ 295 (617)
.++++|+++.+ +++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+
T Consensus 97 ~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~ 176 (652)
T TIGR01217 97 AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGAR 176 (652)
T ss_pred CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHH
Confidence 57899998853 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCCCC--CCCCCCcCCcchhhccCCCCCC
Q psy8155 296 SLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTDSS--SSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 296 ~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++.+++++++++++|+++.. .+.+.++...++....++.++...... .........++++........
T Consensus 177 ~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 255 (652)
T TIGR01217 177 GVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE- 255 (652)
T ss_pred HHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCC-
Confidence 99999999999999998753 345555555555444455554221100 000011234555443311111
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHH-HHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY-FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.......++++++|+|||||||.||||+++|++++ +........++++++|++++.+|++|+.. ..++.+|+.|+++
T Consensus 256 ~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~l~~G~t~ 333 (652)
T TIGR01217 256 LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW--NWLVSGLATGATL 333 (652)
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh--HHHHHHHhcCcEE
Confidence 11123456899999999999999999999999865 44555666788999999999999999753 2256899999999
Q ss_pred EEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHHHHHHHHHcCc-cc
Q psy8155 444 VIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI-AQ 514 (617)
Q Consensus 444 vi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~-~~ 514 (617)
++.+. .++..++++++++++|++..+|++++.+..... ....++++||.++ ||++++++.+++.+.++. ..
T Consensus 334 vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~ 413 (652)
T TIGR01217 334 VLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVW 413 (652)
T ss_pred EEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCCCce
Confidence 99863 378999999999999999888888887765422 2345689999887 899999999999998864 35
Q ss_pred ccccccccccceEEeC--CCCCCCHHHHHHHHhhcCCCC-------------CcCcEEEEeecccCCccchhhhHH----
Q psy8155 515 IGEFYGATEGMAAILD--INKSLDVSAVSEGIKKALPSY-------------ARPLFIRCLREVEMTGTYKLKKLD---- 575 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~--~~~~~~~~~l~~~l~~~Lp~~-------------~~P~~~~~~~~lP~t~~GK~dr~~---- 575 (617)
+.+.||+||++..+.. +........ +...+|.. .....+++...+|.-..|+.+...
T Consensus 414 ~~~~yG~TE~~~~~~~~~~~~~~~~g~----~g~p~~g~~v~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~ 489 (652)
T TIGR01217 414 LASISGGTDICSCFAGANPTLPVHIGE----IQAPGLGTAVQSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKY 489 (652)
T ss_pred EEeccCHHHHhccccCCCCCCCCcCCc----cCCCcCCCceEEECCCCCCCCCCccEEEEecCCCccccceeCCCccchh
Confidence 7799999997433321 111100000 11111111 112334444433433334432221
Q ss_pred ----Hh-hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 ----LQ-KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 ----L~-~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+. .+|| ++||| +|++|+| |+|+|+||.||+||++|+||
T Consensus 490 ~~~~~~~~~g~--~~tGD-lg~~d~d-G~l~i~GR~dd~I~~~G~ri 532 (652)
T TIGR01217 490 RDAYFDTYPGV--WRHGD-WITLTPR-GGIVIHGRSDSTLNPQGVRM 532 (652)
T ss_pred HHhhhcCCCCE--EEcCC-cEEECCC-CcEEEEecccCeEecCCEEc
Confidence 11 1465 56999 9999998 99999999999999999997
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=412.03 Aligned_cols=371 Identities=16% Similarity=0.160 Sum_probs=273.6
Q ss_pred HHHHHHHHHhhCCCceEEEECC----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 210 IADIFREHAVRSPNKVIFMFEN----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 210 l~~~~~~~a~~~p~~~Al~~~~----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
+.+.+.++++++|+++|+++.+ +++||+||.++++++|++|.++ ++|++|+|+++|++++++++||++++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 7888999999999999999986 7899999999999999999988 899999999999999999999999999986
Q ss_pred EecCCC--------CChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 286 ALINHN--------LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 286 vpldp~--------~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
+ ++|. ...+++.+++++++++++|++....+.+...... +.+.+ +.....
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~--------------~~~~~~ 139 (525)
T PRK05851 82 S-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD--------------LATAAH 139 (525)
T ss_pred c-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc--------------cccccc
Confidence 5 4442 2335566789999999999987765544332110 11110 000000
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCC-CCCEEEEcCcchhhHHHHHHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR-TKDRFYTPLPLYHTAGGAMCIGQA 436 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~p~~~~~~~~~~~~~~ 436 (617)
..... . .....+++++||+|||||||.||||+++|+++.+.+.+....+++. ++|++++++|++|+.++ ..++.+
T Consensus 140 ~~~~~-~--~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~ 215 (525)
T PRK05851 140 TNRSA-S--LTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGL-AFLLTA 215 (525)
T ss_pred ccccc-c--CCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccH-HHHHHH
Confidence 00000 0 0123678999999999999999999999999999999888889998 99999999999999996 568899
Q ss_pred hHcCcEEEEcCC--C--CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC-CCCCccCceeeee--ccCCCHHHHHHHHHH
Q psy8155 437 LIFGCCVVIRKK--F--SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE-KPEDKAHNVRLMF--GNGLRPQIWSEFVDR 509 (617)
Q Consensus 437 L~~G~~lvi~~~--~--d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~ 509 (617)
++.|+++++.+. + ++..+++.++++++|++..+|.++..+..... ....++++||.++ |+++++++.++|.+.
T Consensus 216 l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (525)
T PRK05851 216 ALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATA 295 (525)
T ss_pred HHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHH
Confidence 999999999873 3 68899999999999988665555555543222 2234578899887 888999999999875
Q ss_pred ---cCc--ccccccccccccceEEeCC--CCCCCHHHH----------HHHHhhcCCCCCcCcEEEEeec-----c----
Q psy8155 510 ---FRI--AQIGEFYGATEGMAAILDI--NKSLDVSAV----------SEGIKKALPSYARPLFIRCLRE-----V---- 563 (617)
Q Consensus 510 ---~~~--~~l~n~YG~TE~~~~v~~~--~~~~~~~~l----------~~~l~~~Lp~~~~P~~~~~~~~-----l---- 563 (617)
++. .+++|.||+||+.+.+... +.......+ ...++..+|.. .+.++++ +
T Consensus 296 ~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~----~v~i~d~~~~~~~~~g~ 371 (525)
T PRK05851 296 MAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGM----EVRISPGDGAAGVAGRE 371 (525)
T ss_pred HhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCc----EEEEECCCCCccCCCCC
Confidence 332 2599999999996655421 110000000 00122222221 2333321 1
Q ss_pred --------cCCccchhhhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 --------EMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 --------P~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++..+.++|| |+||| +|++| + |+++|+||+||+||++|+||
T Consensus 372 ~GEl~v~g~~~~~GY~~~~~~~~~~~--~~TGD-l~~~~-~-G~l~~~GR~dd~i~~~G~~v 428 (525)
T PRK05851 372 IGEIEIRGASMMSGYLGQAPIDPDDW--FPTGD-LGYLV-D-GGLVVCGRAKELITVAGRNI 428 (525)
T ss_pred eEEEEEecCchhhccccCCccCCCCc--eeccc-eEEEE-C-CEEEEEeecCCEEEECCEEe
Confidence 222346666666666788 77999 99997 5 99999999999999999997
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=407.09 Aligned_cols=394 Identities=17% Similarity=0.215 Sum_probs=293.5
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
.|+.++|+++++++|+++|+++.++.+||+||+++++++|+.|.+ .|+++|++|+++++|++++++++|||+++|++++
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v 103 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEECCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 589999999999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCC--------------------CCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS--------------------SPV 346 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~~~ 346 (617)
|++|.++.+++.+++++++++++|++.+..+.+.++..... .+.+.+.+...... ...
T Consensus 104 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (562)
T PRK05677 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTG--VKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL 181 (562)
T ss_pred ecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccC--cceeEEecccccccchhhhhcccchhhccccccccCC
Confidence 99999999999999999999999998877665555433221 22222221100000 000
Q ss_pred CCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC--CCC-CCEEEEcCcc
Q psy8155 347 PRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--FRT-KDRFYTPLPL 423 (617)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~-~d~~l~~~p~ 423 (617)
+....+.+.+...... ........++++++|+|||||||+||||+++|+++...+......++ +.. .++++..+|+
T Consensus 182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl 260 (562)
T PRK05677 182 PQAVKFNDALAKGAGQ-PVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL 260 (562)
T ss_pred cccccHHHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence 0111222222221111 11112346789999999999999999999999999887776665554 333 3688999999
Q ss_pred hhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCH
Q psy8155 424 YHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRP 500 (617)
Q Consensus 424 ~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~ 500 (617)
+|..++.+.++.++..|++.++.+ ..++..+++.|+++++|++..+|+++..++.........++++|.++ |+++++
T Consensus 261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~ 340 (562)
T PRK05677 261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340 (562)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence 999987777888888999877765 57899999999999999999999999999876554445577899887 888999
Q ss_pred HHHHHHHHHcCcccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------
Q psy8155 501 QIWSEFVDRFRIAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------ 563 (617)
Q Consensus 501 ~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------ 563 (617)
++.++|.+.++. .+++.||+||+...+.. ........ .++..+|.. .+.++++ +
T Consensus 341 ~~~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~~----~vG~~~~~~----~v~i~d~~~~~~~~g~~Gel~v~g 411 (562)
T PRK05677 341 ATAERWKEVTGC-AICEGYGMTETSPVVSVNPSQAIQVG----TIGIPVPST----LCKVIDDDGNELPLGEVGELCVKG 411 (562)
T ss_pred HHHHHHHHHcCC-CeeccCCccccCcceeecCccCCCCC----ccCccCCCC----EEEEECCCCCCCCCCCCeEEEEec
Confidence 999999998875 79999999998654441 11111100 011112211 1222221 1
Q ss_pred cCCccchhhhHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 EMTGTYKLKKLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 P~t~~GK~dr~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+..+.. +..+|| ++||| +|++|+| |+++|.||.||+||++|+||
T Consensus 412 ~~~~~gY~~~~~~t~~~~~~~g~--~~TGD-lg~~~~~-G~l~i~GR~~d~i~~~G~~i 466 (562)
T PRK05677 412 PQVMKGYWQRPEATDEILDSDGW--LKTGD-IALIQED-GYMRIVDRKKDMILVSGFNV 466 (562)
T ss_pred CccchhhcCCchhhhhccCCCCc--ccccc-eEEECCC-CcEEEEecCcCeEEeCCEEE
Confidence 222344444333 334677 77999 9999998 99999999999999999986
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=405.35 Aligned_cols=397 Identities=16% Similarity=0.176 Sum_probs=298.2
Q ss_pred CCCHHHHHHHHHhhCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
..++.++|+..++.+|+++++.+. .+.+||.||+++++++|++|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G 88 (539)
T PRK07008 9 PLLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSG 88 (539)
T ss_pred CCCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 357899999999999999998752 2589999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|++|.++.+++.++++.+++++++++.++.+.+.++.........++.+.+....... ......++++.......
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 167 (539)
T PRK07008 89 AVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAG-STPLLCYETLVGAQDGD 167 (539)
T ss_pred cEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccC-CcccccHHHHhcccCCC
Confidence 99999999999999999999999999999998877776665555444444444432211000 01133444444322211
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH--HHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG--GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~--~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
. ......++++++++|||||||.||||+++|+++.... .+....+++.++|+++...|++|..++ ..++.++..|
T Consensus 168 ~--~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G 244 (539)
T PRK07008 168 Y--DWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAW-GLPYSAPLTG 244 (539)
T ss_pred c--CcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhH-HHHHHHHhcC
Confidence 1 1224567899999999999999999999999986533 233346788899999999999997765 3356789999
Q ss_pred cEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 441 CCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 441 ~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
+++++.+ .+++..+++.++++++|++..+|+++..+++.......+++++|.++ |++++++++++|.+.++. .+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~l~~ 323 (539)
T PRK07008 245 AKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGV-EVIH 323 (539)
T ss_pred ceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCC-ceec
Confidence 9999875 57999999999999999999999999999987666566788998887 888999999999999986 7999
Q ss_pred cccccccceEEeCC--C-C--CCCHHHH---HHHHhhcCCCCCcCcEEEEeec----ccC--------------Cccchh
Q psy8155 518 FYGATEGMAAILDI--N-K--SLDVSAV---SEGIKKALPSYARPLFIRCLRE----VEM--------------TGTYKL 571 (617)
Q Consensus 518 ~YG~TE~~~~v~~~--~-~--~~~~~~l---~~~l~~~Lp~~~~P~~~~~~~~----lP~--------------t~~GK~ 571 (617)
.||+||+....... . . ....... ...++..+|.. .+.++++ +|. -..|+.
T Consensus 324 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~----~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~ 399 (539)
T PRK07008 324 AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGV----DMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYF 399 (539)
T ss_pred ccccccccccceecccccccccCCchhhhhhcccCCccccce----EEEEECCCCCccCCCCCcceEEEEeCCccchhhc
Confidence 99999996543311 0 0 0000000 01122222211 2222221 111 112333
Q ss_pred hh--HHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KK--LDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr--~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++ ..+ ..|| ++||| +|++|+| |+++++||+||+||++|+||
T Consensus 400 ~~~~~~~-~~g~--~~TGD-~~~~~~d-g~l~~~GR~~d~i~~~G~~v 442 (539)
T PRK07008 400 RGDASPL-VDGW--FPTGD-VATIDAD-GFMQITDRSKDVIKSGGEWI 442 (539)
T ss_pred CChhhhh-cCCC--cccCc-eEEEcCC-CcEEEeecccCEEEeCCeEE
Confidence 22 122 2577 77999 9999998 99999999999999999986
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=408.14 Aligned_cols=401 Identities=17% Similarity=0.160 Sum_probs=299.4
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~ 279 (617)
+..+.++.++|+.+|+++|++++++.. .+++||+||.++++++|++|++.|+++|++|+++++|+.+++++++||+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~ 85 (542)
T PRK06018 6 QDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIM 85 (542)
T ss_pred hcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHH
Confidence 345679999999999999999999852 3689999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 280 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 280 ~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
++|++++|++|.++.+++..+++.+++++++++.+..+.+.+.....+....++.+.+..............+.+++...
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (542)
T PRK06018 86 GIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEA 165 (542)
T ss_pred hcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccC
Confidence 99999999999999999999999999999999998888777766555544444444332111011111223344444332
Q ss_pred CCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHH-H-HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHh
Q psy8155 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY-F-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~-~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L 437 (617)
... .......++++++|+|||||||.||||+++|++.+ + ........+++..+|+++...|++|..++ ...+.++
T Consensus 166 ~~~--~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~-~~~~~~~ 242 (542)
T PRK06018 166 DGD--FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSW-GIAFSAP 242 (542)
T ss_pred Ccc--cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhh-HHHHhhh
Confidence 211 11124466889999999999999999999999743 2 22344557788999999999999998886 3456789
Q ss_pred HcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 438 IFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 438 ~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
..|+++++.. .+++..+++.++++++|++.++|+++..|++.......+++++|.++ |+++++++.++|.+ ++. .
T Consensus 243 ~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~-~ 320 (542)
T PRK06018 243 SMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MGV-E 320 (542)
T ss_pred hcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-hCC-C
Confidence 9999999875 57899999999999999999999999999877655555678999887 89999999999998 776 7
Q ss_pred ccccccccccceEEeCC--CC--CCCHHHHH----HHHhhcCCCCCcCcEEEEeec----ccCC--------------cc
Q psy8155 515 IGEFYGATEGMAAILDI--NK--SLDVSAVS----EGIKKALPSYARPLFIRCLRE----VEMT--------------GT 568 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~~--~~--~~~~~~l~----~~l~~~Lp~~~~P~~~~~~~~----lP~t--------------~~ 568 (617)
+++.||+||+....... .. .......+ ......+|. ..+.+++. +|.. ..
T Consensus 321 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g----~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~ 396 (542)
T PRK06018 321 VRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFG----VEMKITDDAGKELPWDGKTFGRLKVRGPAVAA 396 (542)
T ss_pred eEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCC----cEEEEECCCCCCCCCCCCceeEEEEecCCcch
Confidence 99999999986443311 11 00000000 001111111 12233321 1211 11
Q ss_pred chh--hhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKL--KKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~--dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+. +...+..+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 397 gy~~~~~~~~~~~~~--~~TGD-l~~~~~~-g~~~~~GR~~d~i~~~G~~v 443 (542)
T PRK06018 397 AYYRVDGEILDDDGF--FDTGD-VATIDAY-GYMRITDRSKDVIKSGGEWI 443 (542)
T ss_pred hhhcCcccEecCCcE--EEcCC-EEEEcCC-ccEEEEecCCCeEEECCEEE
Confidence 221 2223345677 77999 9999997 99999999999999999986
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=413.77 Aligned_cols=383 Identities=15% Similarity=0.141 Sum_probs=279.5
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECC---------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFEN---------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~---------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
+...++.++++++++++|+++|+++.+ +.+||+||.++++++|++|.+. +++|++|+++++|++++++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~ 109 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGF 109 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHH
Confidence 345789999999999999999998731 4899999999999999999986 999999999999999999999
Q ss_pred HHHHhcCCeEEec-CCCCC--hHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC--CeEEEEeCCCCCCCCCCCCCcC
Q psy8155 276 LGLSKLGVITALI-NHNLR--QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQ 350 (617)
Q Consensus 276 lA~~~aG~~~vpl-dp~~p--~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~ 350 (617)
|||+++|++++|+ ++.++ .+++.+++++++++++|+++...+.+......++. ...++.+++...
T Consensus 110 lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------- 179 (612)
T PRK12476 110 FAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD---------- 179 (612)
T ss_pred HHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc----------
Confidence 9999999999999 68887 88999999999999999998877665554433321 123444432110
Q ss_pred CcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC-CCCCCEEEEcCcchhhHHH
Q psy8155 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-FRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~~~ 429 (617)
..... .......+++++||+|||||||+||||+++|+++.+.+......++ +.+++++++++|++|..++
T Consensus 180 -------~~~~~--~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~ 250 (612)
T PRK12476 180 -------SAGES--FVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGL 250 (612)
T ss_pred -------ccccc--ccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccch
Confidence 00000 0112346789999999999999999999999999887777777777 7889999999999999986
Q ss_pred HHHHHHHhHcCcEEEEcCC----CCHHHHHHHHH--HcCCcEEeecHHHHHHHHcCCC----CCCCccCceeeee-ccCC
Q psy8155 430 AMCIGQALIFGCCVVIRKK----FSASNYFSDVC--KYKCTVGQYIGEMCRYLLSTPE----KPEDKAHNVRLMF-GNGL 498 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~--~~~vt~~~~~P~~~~~l~~~~~----~~~~~l~~lr~v~-Ge~l 498 (617)
. .++.+++.|+++++..+ .+|..+++.++ ++++|++..+|+++..++.... ....+++++|++. |+++
T Consensus 251 ~-~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr~~~gg~~~ 329 (612)
T PRK12476 251 S-MIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVVLIIGSEPV 329 (612)
T ss_pred H-HHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHheEEecccCC
Confidence 4 44455556666666542 38999999995 5899999999999887775421 1234578888333 8889
Q ss_pred CHHHHHHHHHHcC---c--ccccccccccccceEEeCC--CCCC-----CHHHHH-----------------HHHhhcCC
Q psy8155 499 RPQIWSEFVDRFR---I--AQIGEFYGATEGMAAILDI--NKSL-----DVSAVS-----------------EGIKKALP 549 (617)
Q Consensus 499 ~~~~~~~~~~~~~---~--~~l~n~YG~TE~~~~v~~~--~~~~-----~~~~l~-----------------~~l~~~Lp 549 (617)
++++.++|.+.++ . .+++|.||+||+...+... .... +...+. ..++..+|
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~ 409 (612)
T PRK12476 330 SIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVAR 409 (612)
T ss_pred CHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCC
Confidence 9999999999873 2 3599999999986554421 1100 000000 01122222
Q ss_pred CCCcCcEEEEeec-----c------------cCCccchhhhHHHhh-----------------------cCCCCCccCCe
Q psy8155 550 SYARPLFIRCLRE-----V------------EMTGTYKLKKLDLQK-----------------------EGFDPNVIQDR 589 (617)
Q Consensus 550 ~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~L~~-----------------------~g~~~~~TGD~ 589 (617)
. ..+.++++ + |....|+.++...++ .+| ++|||
T Consensus 410 g----~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w--~~TGD- 482 (612)
T PRK12476 410 S----QWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTW--LRTGD- 482 (612)
T ss_pred C----CEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCe--eeccc-
Confidence 1 12333321 1 222244444333221 236 77999
Q ss_pred eEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 590 LYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 590 lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|+++ | |+|+|+||+||+||++|+||
T Consensus 483 lg~~~-d-G~l~i~GR~~d~I~~~G~~I 508 (612)
T PRK12476 483 LGVYL-D-GELYITGRIADLIVIDGRNH 508 (612)
T ss_pred cceeE-C-CEEEEEeccCcEEEECCccc
Confidence 99985 6 99999999999999999997
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=403.24 Aligned_cols=392 Identities=16% Similarity=0.217 Sum_probs=297.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
...++.++|.+.++++|+++|+.++++.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|+++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~ 84 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVW 84 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEECCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|+++.++.+++..+++++++++++++.+..+.+..+.........++.++.... ...+.++........ .
T Consensus 85 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~ 155 (528)
T PRK07470 85 VPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARA--------GLDYEALVARHLGAR-V 155 (528)
T ss_pred EecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcc--------cccHHHHHhcCCCCC-C
Confidence 9999999999999999999999999998877666555444433344555443211 123444333221111 1
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh--CCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI--GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
......++++++|+|||||||.||||+++|+++...+......+ +..++|+++..+|++|..++ ..++ .++.|++.
T Consensus 156 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~-~~~~g~~~ 233 (528)
T PRK07470 156 ANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGI-HQLC-QVARGAAT 233 (528)
T ss_pred CcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHH-HHHH-HHhcCceE
Confidence 12245678999999999999999999999999976554433222 56788999999999999885 4444 67788888
Q ss_pred EEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 444 VIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 444 vi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
++.+ .++++.+++.|+++++|++.++|++++.+.+.+.....+++++|.++ |++++++..+++.+.++. .++|.|
T Consensus 234 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~-~~~~~Y 312 (528)
T PRK07470 234 VLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK-VLVQYF 312 (528)
T ss_pred EEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCc-HHHHhC
Confidence 7765 47899999999999999999999999999987665556788999887 888999999999999886 699999
Q ss_pred cccccceEEeC-CCC--CCCH-HHH-HHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHhh
Q psy8155 520 GATEGMAAILD-INK--SLDV-SAV-SEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQK 578 (617)
Q Consensus 520 G~TE~~~~v~~-~~~--~~~~-~~l-~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~~ 578 (617)
|+||+...+.. ... ..+. ... ...++..+|.. .+.++++ + |....|+.++....+
T Consensus 313 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~----~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~ 388 (528)
T PRK07470 313 GLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGM----EVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANA 388 (528)
T ss_pred CCcccCCceeecchhhccccccccceeeccCcccCCc----EEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHH
Confidence 99998544331 100 0000 000 00011111111 1222221 1 222334444444433
Q ss_pred ----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 ----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| ++||| +|++|+| |++++.||.||+||++|+||
T Consensus 389 ~~~~~~~--~~TGD-l~~~~~~-g~l~~~GR~dd~i~~~G~~v 427 (528)
T PRK07470 389 KAFRDGW--FRTGD-LGHLDAR-GFLYITGRASDMYISGGSNV 427 (528)
T ss_pred hhhcCCc--Eecce-eEEEccC-CeEEEeCCccceEEeCCEEE
Confidence 567 77999 9999998 99999999999999999986
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=439.62 Aligned_cols=401 Identities=19% Similarity=0.208 Sum_probs=302.6
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEEC-CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFE-NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~-~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
......++.+.|+++++++|+++|+++. ++++||+||+++++++|++|.+ ++++|++|+++++|+++++++++||+++
T Consensus 610 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 610 RKEALPPLAEAWIDTAKRNWSRLAVADSTGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred hcCCCCCHHHHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 3455678999999999999999999975 6799999999999999999987 4899999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHH--HhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS--TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
|++++|+||.++.+++.++++++++++++++++..+.+.+.. ...+...+++..++.... ......+.+.....
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 764 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAK----ISKVDKLTALLAAR 764 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccc----cchhHHHHHHHHhc
Confidence 999999999999999999999999999999987666554210 012223344444432110 00011111111110
Q ss_pred CCC----CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 360 PTS----PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 360 ~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
... .........++|+++|+|||||||.||||+++|+++.+.+.+..+.+++.++|++++.+|++|..++...++.
T Consensus 765 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 844 (1146)
T PRK08633 765 LLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWL 844 (1146)
T ss_pred cCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHH
Confidence 000 0000124567999999999999999999999999999999988889999999999999999999998777889
Q ss_pred HhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 436 ALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 436 ~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
++..|+++++.+ ..+++.+++.++++++|++..+|++++.+.+.....+.+++++|.+. ||++++++.++|.+.++.
T Consensus 845 ~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~ 924 (1146)
T PRK08633 845 PLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGI 924 (1146)
T ss_pred HHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCC
Confidence 999999999876 47999999999999999999999999999887665666788999887 888999999999999986
Q ss_pred ccccccccccccceEEe-CCCCCCCHHH------HHHHHhhcCCCCCcCcEEEEee-----cccCCc------------c
Q psy8155 513 AQIGEFYGATEGMAAIL-DINKSLDVSA------VSEGIKKALPSYARPLFIRCLR-----EVEMTG------------T 568 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~-~~~~~~~~~~------l~~~l~~~Lp~~~~P~~~~~~~-----~lP~t~------------~ 568 (617)
+++|.||+||+...+. .......... -...++..+|. ..+.+++ .+|... .
T Consensus 925 -~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~----~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~ 999 (1146)
T PRK08633 925 -RILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPG----VAVRIVDPETFEELPPGEDGLILIGGPQVMK 999 (1146)
T ss_pred -CeecccccccCcceEEEecCcccccccccccCCCCCCccccCCC----CEEEEEcCCCCccCCCCCceEEEEcCCCccc
Confidence 7999999999865443 1111000000 00011222221 1233333 122222 2
Q ss_pred chhhhHHHh----hc----CCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLDLQ----KE----GFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~L~----~~----g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.++.... .+ || ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 1000 gY~~~~~~t~~~~~~~~~~~~--~~TGD-~~~~~~~-g~l~~~gR~~d~i~~~G~~v 1052 (1146)
T PRK08633 1000 GYLGDPEKTAEVIKDIDGIGW--YVTGD-KGHLDED-GFLTITDRYSRFAKIGGEMV 1052 (1146)
T ss_pred cccCCccchHHHhhcCCCCCe--EECCC-EEEEcCC-ceEEEEecccchhhhCcEEE
Confidence 333322221 22 77 77999 9999998 99999999999999999986
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=402.06 Aligned_cols=392 Identities=18% Similarity=0.230 Sum_probs=301.8
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
..+.|+.++|.++++++|+++|++++++.+||.||.++++++|+.|.+.|+++|++|+++++++++++++++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 88 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLR 88 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccc-hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAE-LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
++|++|..+.+++..++++++++.+++++. ....+.......+...+++.++.... ...+.+........
T Consensus 89 ~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~- 159 (524)
T PRK06188 89 RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD--------GVDLLAAAAKFGPA- 159 (524)
T ss_pred EEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc--------hhhHHHhhhccCcc-
Confidence 999999999999999999999999999876 44444443333333334554443211 00111111111111
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 364 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.......++++++|+|||||||.||||+++|+++.+.+......+++..++++++..|++|..++ .++.++..|+++
T Consensus 160 -~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~G~~~ 236 (524)
T PRK06188 160 -PLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGA--FFLPTLLRGGTV 236 (524)
T ss_pred -cccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhH--HHHHHHHcCCEE
Confidence 11122345679999999999999999999999999999999899999999999999999998774 367889999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccc
Q psy8155 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGA 521 (617)
Q Consensus 444 vi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 521 (617)
++.+..++..+++.++++++|++..+|+++..+++........++++|.++ |++++++..++|.+.++. .+++.||+
T Consensus 237 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~ 315 (524)
T PRK06188 237 IVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGP-IFAQYYGQ 315 (524)
T ss_pred EEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCc-hhhheeCc
Confidence 999999999999999999999999999999999988776666788999887 888999999999999986 69999999
Q ss_pred cccceEEeC-CCCCC--CHHHHHHHHhhcCCCCCcCcEEEEeec----------------ccCCccchhhhHHHh----h
Q psy8155 522 TEGMAAILD-INKSL--DVSAVSEGIKKALPSYARPLFIRCLRE----------------VEMTGTYKLKKLDLQ----K 578 (617)
Q Consensus 522 TE~~~~v~~-~~~~~--~~~~l~~~l~~~Lp~~~~P~~~~~~~~----------------lP~t~~GK~dr~~L~----~ 578 (617)
||+...+.. ..... ....-...++..+|.. .+.++++ -|....|+.+..... +
T Consensus 316 tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~----~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~ 391 (524)
T PRK06188 316 TEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGL----RVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFR 391 (524)
T ss_pred cccCCceeecCchhccccccccCCccccccCCc----EEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhc
Confidence 999443331 11100 0000000112222221 1222211 122223444333322 3
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 392 ~g~--~~TGD-l~~~~~~-g~~~~~GR~~~~i~~~G~~i 426 (524)
T PRK06188 392 DGW--LHTGD-VAREDED-GFYYIVDRKKDMIVTGGFNV 426 (524)
T ss_pred CCc--eeecc-eEEEcCC-ccEEEEeccccceecCCEEE
Confidence 577 77999 9999997 99999999999999999886
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=404.45 Aligned_cols=402 Identities=15% Similarity=0.168 Sum_probs=297.5
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEEC---CceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFE---NTEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~---~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
.+.|+.+++++.+..+|+++|+++. ++.+||+||.++++++|++|.+ .|+++|++|+++++|+.+++++++||+++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~ 87 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACM 87 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999875 3789999999999999999986 89999999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCC----CCCCCCcCCcchhhc
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS----SSPVPRSQALSPLLS 357 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~ 357 (617)
|++++|+||.++.+++.++++.++++++|+++...+.+.+....++....++.++...... ........++.++..
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 167 (576)
T PRK05620 88 GAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD 167 (576)
T ss_pred CCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhh
Confidence 9999999999999999999999999999999988887777666555444444444221110 000011234555544
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHH--HHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
...... ......++++++++|||||||.||||+++|+++....... ...+++..++++++.+|++|..++ ..++.
T Consensus 168 ~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~-~~~~~ 244 (576)
T PRK05620 168 GRSTVY--DWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSW-GVPLA 244 (576)
T ss_pred cCCCcC--CCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhh-HHHHH
Confidence 322111 1224567899999999999999999999999986554432 345788999999999999999886 55788
Q ss_pred HhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 436 ALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 436 ~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
++..|+++++.+ .+++..+++.|+++++|++..+|+++..++...........++|.++ |+++++++.++|.+.++.
T Consensus 245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~ 324 (576)
T PRK05620 245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV 324 (576)
T ss_pred HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 999999999876 57999999999999999999999999888765332333345788776 888999999999998886
Q ss_pred ccccccccccccceEEe--CCCCCCCHHH---HHHHHhhcCCCC---------------CcCcEEEEeecccCCccchhh
Q psy8155 513 AQIGEFYGATEGMAAIL--DINKSLDVSA---VSEGIKKALPSY---------------ARPLFIRCLREVEMTGTYKLK 572 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~--~~~~~~~~~~---l~~~l~~~Lp~~---------------~~P~~~~~~~~lP~t~~GK~d 572 (617)
++++.||+||+..... .+........ .........+.. .....+.+... ....|+.+
T Consensus 325 -~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~Gel~v~g~--~~~~gY~~ 401 (576)
T PRK05620 325 -DVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGN--WVTASYYH 401 (576)
T ss_pred -ceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecCCccccCCCCCceEEEEEcC--cccccccC
Confidence 7999999999954332 1111000000 000011111110 00011111111 11122222
Q ss_pred hH---------------------HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 573 KL---------------------DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 573 r~---------------------~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.. ...++|| ++||| ++++|+| |+++++||.||+||++|+||
T Consensus 402 ~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~--~~TGD-~~~~~~d-g~l~~~GR~~d~i~~~G~~i 463 (576)
T PRK05620 402 SPTEEGGGAASTFRGEDVEDANDRFTADGW--LRTGD-VGSVTRD-GFLTIHDRARDVIRSGGEWI 463 (576)
T ss_pred CccccccccccccccccchhhhcccccCCc--EecCc-eEEEcCC-ceEEEEechhhhhhcCCEEE
Confidence 11 1335677 77999 9999997 99999999999999999986
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=405.80 Aligned_cols=393 Identities=18% Similarity=0.213 Sum_probs=301.7
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
....++.+.+++++.++|+++|+.+.++.+||.||.++++++|++|.+.|+++|++|+++++++++++++++||+++|++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~ 93 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAI 93 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
++|+++.++.+++..+++++++++++++....+.+.......+....++..++... ....++.+++........
T Consensus 94 ~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 167 (542)
T PRK07786 94 AVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD------DSVLGYEDLLAEAGPAHA 167 (542)
T ss_pred EEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc------ccccCHHHHhhccCCCCC
Confidence 99999999999999999999999999998877766555444443344444432110 112344444433222111
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCC-CCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF-RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
......+++++++|||||||.||||+++|+++.+.+......+++ ..+++++...|++|..++ ..++.++..|+++
T Consensus 168 --~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~ 244 (542)
T PRK07786 168 --PVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPT 244 (542)
T ss_pred --CCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHccCEE
Confidence 123456789999999999999999999999999988888788877 678899999999998885 7788999999999
Q ss_pred EEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 444 VIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 444 vi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
++.+ .+++..+++.|+++++|.+.++|+++..++........ ..++|.++ |+++++++++++.+.++..++++.|
T Consensus 245 v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~-~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~Y 323 (542)
T PRK07786 245 VIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPR-DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAF 323 (542)
T ss_pred EEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCcc-CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeee
Confidence 9965 57999999999999999999999999999876543332 23688776 7889999999999999777899999
Q ss_pred cccccceEEeC-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh----h
Q psy8155 520 GATEGMAAILD-INKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ----K 578 (617)
Q Consensus 520 G~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~----~ 578 (617)
|+||+...... ..... .... ..++..+|. ..+.++++ + |....|+.+..... .
T Consensus 324 G~tE~~~~~~~~~~~~~-~~~~-~~~G~~~~~----~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~ 397 (542)
T PRK07786 324 GQTEMSPVTCMLLGEDA-IRKL-GSVGKVIPT----VAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFA 397 (542)
T ss_pred cccccccceEecCcccc-cccC-CCccccCCC----ceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhh
Confidence 99998643331 11100 0000 001111111 01111111 1 22223333332222 3
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|| ++||| ++++++| |+++++||.||+||++|+||
T Consensus 398 ~~~--~~TGD-l~~~~~~-g~~~i~GR~~d~i~~~G~~v 432 (542)
T PRK07786 398 GGW--FHSGD-LVRQDEE-GYVWVVDRKKDMIISGGENI 432 (542)
T ss_pred CCc--ccccc-eEEEcCC-ceEEEEecccceEEeCCEEE
Confidence 567 77999 9999997 99999999999999999885
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=437.48 Aligned_cols=393 Identities=15% Similarity=0.162 Sum_probs=296.4
Q ss_pred ccCCCHHHHHHHHHhhCC-CceEEEE-CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSP-NKVIFMF-ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p-~~~Al~~-~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+...++.+.+.++++++| ++.|+.+ +++++||+||+++++++|++|++ |+++||+|+++++|+++++++++||+++|
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECCCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 445789999999999997 5677776 47899999999999999999975 99999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHH--HHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAV--QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
++++|+||.++.+++.++++++++++++++++..+.. .......+....++.+++.... ......+.+......
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~ 782 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQ----IGLADKIKGLLAGRF 782 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhcc----CChHHHHHHHhhccC
Confidence 9999999999999999999999999999998765432 2222333334455655532210 000000111111111
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
... ..+...++|++||+|||||||.||||+++|+++.+.+......++++++|++++.+|++|..++..+++.++..|
T Consensus 783 ~~~--~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 783 PLV--YFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred Ccc--ccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 110 011347899999999999999999999999999999998888999999999999999999999878888999999
Q ss_pred cEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 441 CCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 441 ~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
+++++.+. .++..+.+.++++++|++..+|++++.+.+.. ...+++++|.+. ||++++++.++|.+.++. +++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~-~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGI-RILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhCC-cEEe
Confidence 99999874 57788899999999999999999999887653 234578899887 888999999999999876 7999
Q ss_pred cccccccceEEeCC-CCCCCHHHHHHHHhhcCCCCC----------cCcEEEEeecccCCccchhhhHH-----HhhcCC
Q psy8155 518 FYGATEGMAAILDI-NKSLDVSAVSEGIKKALPSYA----------RPLFIRCLREVEMTGTYKLKKLD-----LQKEGF 581 (617)
Q Consensus 518 ~YG~TE~~~~v~~~-~~~~~~~~l~~~l~~~Lp~~~----------~P~~~~~~~~lP~t~~GK~dr~~-----L~~~g~ 581 (617)
.||+||+...+... ...... ..+++.+|... .+..+.+.. |....|+.+... ..++||
T Consensus 938 ~YG~TE~~~~~~~~~~~~~~~----~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g--~~~~~gY~~~~~~~~~~~~~~g~ 1011 (1140)
T PRK06814 938 GYGVTETAPVIALNTPMHNKA----GTVGRLLPGIEYRLEPVPGIDEGGRLFVRG--PNVMLGYLRAENPGVLEPPADGW 1011 (1140)
T ss_pred ccccccccceEEecCCCCCCC----CcCCccCCCCeEEEeecCCCCCceEEEEeC--CCcchhhcCCCCCCccccCCCCe
Confidence 99999996554421 111000 01222233211 011122111 222234433211 124677
Q ss_pred CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|+| |+++++||.||+||++|+||
T Consensus 1012 --~~TGD-l~~~d~d-G~l~~~GR~~d~i~~~G~~v 1043 (1140)
T PRK06814 1012 --YDTGD-IVTIDEE-GFITIKGRAKRFAKIAGEMI 1043 (1140)
T ss_pred --EecCC-EEEECCC-CeEEEEecccCeeeeCCEEE
Confidence 77999 9999998 99999999999999999986
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=402.23 Aligned_cols=400 Identities=19% Similarity=0.199 Sum_probs=290.7
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
.|+.++|.++++++|+++|+.+.++.+||.||+++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~ 82 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVN 82 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++.++++++++++++++....+.+.++....+....++.++..... ....+...+.+++.........
T Consensus 83 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 158 (533)
T PRK07798 83 VNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGN--DLLPGAVDYEDALAAGSPERDF-- 158 (533)
T ss_pred cCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccc--ccCCccccHHHHHhccCCcCCC--
Confidence 999999999999999999999999988777776665544444456666543211 0111123444544432221111
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---------hCC------CCCCEEEEcCcchhhHHHHHH
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---------IGF------RTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~d~~l~~~p~~~~~~~~~~ 432 (617)
.. ...+.++|+|||||||.||||+++|+++.......... ..+ ..+++++..+|++|..++ +.
T Consensus 159 ~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~-~~ 236 (533)
T PRK07798 159 GE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQ-WA 236 (533)
T ss_pred CC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhH-HH
Confidence 11 22355799999999999999999999987655443222 112 567899999999999996 67
Q ss_pred HHHHhHcCcEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHH-HHHcCCC-CCCCccCceeeee--ccCCCHHHHHHH
Q psy8155 433 IGQALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCR-YLLSTPE-KPEDKAHNVRLMF--GNGLRPQIWSEF 506 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~-~l~~~~~-~~~~~l~~lr~v~--Ge~l~~~~~~~~ 506 (617)
++.+|..|+++++.+ .+++..+++.|+++++|++..+|..+. .+..... .....++++|.++ |+++++++.++|
T Consensus 237 ~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~ 316 (533)
T PRK07798 237 AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEAL 316 (533)
T ss_pred HHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHH
Confidence 889999999999998 789999999999999999999986553 3333222 2334578898887 888999999999
Q ss_pred HHHcCcccccccccccccceEEeCCCCCCC--HH--------H--HHHHHhhcCCCCCcCcEEEEeecccCCccchhhhH
Q psy8155 507 VDRFRIAQIGEFYGATEGMAAILDINKSLD--VS--------A--VSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 574 (617)
Q Consensus 507 ~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~--~~--------~--l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~ 574 (617)
.+.++...+++.||+||+............ .. . +.+.-...++.........+.. +....|+.+..
T Consensus 317 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~--~~~~~gy~~~~ 394 (533)
T PRK07798 317 LELLPNVVLTDSIGSSETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARR--GHIPLGYYKDP 394 (533)
T ss_pred HHHcCCCeEEeeecccccccccccCCCCCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEee--cCccccccCCh
Confidence 999866689999999998443331110000 00 0 0000001111110000111111 11222333222
Q ss_pred HHhh------cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQK------EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~------~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...+ .|-.|++||| +|++|+| |+++++||.||+||++|+||
T Consensus 395 ~~t~~~f~~~~~~~~~~TGD-~~~~~~~-g~l~~~GR~~~~i~~~G~~v 441 (533)
T PRK07798 395 EKTAETFPTIDGVRYAIPGD-RARVEAD-GTITLLGRGSVCINTGGEKV 441 (533)
T ss_pred hhhHHhhccCCCCceEEcCc-EEEEcCC-CcEEEEccccceEecCCEEe
Confidence 2221 2212377999 9999997 99999999999999999986
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=402.22 Aligned_cols=387 Identities=18% Similarity=0.246 Sum_probs=293.5
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|+++++ |+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++.+
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v 101 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICGERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPV 101 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEe
Confidence 4689999999887 99999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
++++..+.+++..+++++++++++++.... .....+....+....++..+... ...+.+.+.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 172 (536)
T PRK10946 102 NALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG---------EHSLDDAINHPAE 172 (536)
T ss_pred cCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC---------CccHHHHhhCccc
Confidence 777777888899999999999999986531 22223333333323333332210 2223333332221
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHhHcC
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQALIFG 440 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L~~G 440 (617)
..+ .....++++++++|||||||.||||+++|+++...+......++++++|++++.+|++|..++.. .++.+|..|
T Consensus 173 ~~~--~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g 250 (536)
T PRK10946 173 DFT--ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAG 250 (536)
T ss_pred ccc--cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcC
Confidence 111 12346789999999999999999999999999999998888999999999999999999877533 578899999
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCC--CCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP--EKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 441 ~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~--~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
+++++.+.+++..+++.++++++|++.++|+++..+++.. ......++++|.+. |+++++++.++|.+.++. +++
T Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~-~~~ 329 (536)
T PRK10946 251 GTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGC-QLQ 329 (536)
T ss_pred cEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCC-eEE
Confidence 9999998899999999999999999999999999998752 22334567888887 788999999999998886 799
Q ss_pred ccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcC-cEEEEeec----c------------cCCccchhhhHH----
Q psy8155 517 EFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARP-LFIRCLRE----V------------EMTGTYKLKKLD---- 575 (617)
Q Consensus 517 n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P-~~~~~~~~----l------------P~t~~GK~dr~~---- 575 (617)
+.||+||+.+.+...... +.. ....+...++ | ..+.++++ + |....|+.++..
T Consensus 330 ~~YG~tE~~~~~~~~~~~-~~~-~~~~~G~p~~----~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~ 403 (536)
T PRK10946 330 QVFGMAEGLVNYTRLDDS-DER-IFTTQGRPMS----PDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNAS 403 (536)
T ss_pred EeecccccceeeecCCCc-ccc-ccccCCcccC----CCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchh
Confidence 999999986544321111 000 0000111110 1 11222221 1 223344444333
Q ss_pred -HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 -LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 -L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+.++|| ++||| +|++|+| |++++.||.||+||++|+||
T Consensus 404 ~~~~d~~--~~TGD-l~~~d~~-G~l~~~gR~~d~i~~~G~~v 442 (536)
T PRK10946 404 AFDANGF--YCSGD-LVSIDPD-GYITVVGREKDQINRGGEKI 442 (536)
T ss_pred hcccCCc--eecCc-eEEECCC-CcEEEeccccceeecCCEEE
Confidence 335677 77999 9999998 99999999999999999985
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=400.49 Aligned_cols=374 Identities=18% Similarity=0.253 Sum_probs=284.0
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
...++.+.|.++++++|+++|++++++.+||+||.++++++|++|++.|+++|++|+++++|++++++++||++++|+++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~ 112 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV 112 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeCCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|+++.++.+++.+++++++++++++++...+.+.... ..++.++.... .. .... .
T Consensus 113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~~~----------~~----~~~~-~--- 168 (516)
T PRK13383 113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD------DAVAVIDPATA----------GA----EESG-G--- 168 (516)
T ss_pred EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh------cceEEeccchh----------hh----hcCC-C---
Confidence 99999999999999999999999999987766544321 12223321100 00 0000 0
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH--HHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG--GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~--~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.+..+++.++|+|||||||+||||+++|....... ......+++.++|+++...|++|..++ ..++.++..|+++
T Consensus 169 --~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~ 245 (516)
T PRK13383 169 --RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTV 245 (516)
T ss_pred --CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEE
Confidence 01134567899999999999999999998432221 223345678899999999999999997 5577899999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 444 vi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
++.+.++++.+++.++++++|.+.++|+++..|.+.... ....++++|.++ |+++++++.++|.+.++. .++|.|
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~-~v~~~Y 324 (516)
T PRK13383 246 LTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD-ILYNGY 324 (516)
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCc-hhhhcc
Confidence 999889999999999999999999999999999876432 123467898887 888999999999999987 699999
Q ss_pred cccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhH-HHhhcCCC
Q psy8155 520 GATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKL-DLQKEGFD 582 (617)
Q Consensus 520 G~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~-~L~~~g~~ 582 (617)
|+||+........... ......+...+|.. .+.+++. + |....|+.+.. ....+||
T Consensus 325 G~tE~~~~~~~~~~~~--~~~~~~~G~~~~~~----~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~- 397 (516)
T PRK13383 325 GSTEVGIGALATPADL--RDAPETVGKPVAGC----PVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGM- 397 (516)
T ss_pred cccccccceecccccc--ccCCCcccCCCCCc----EEEEECCCCCCCCCCCceEEEEecCcccccccCCchhheecCc-
Confidence 9999964433111100 00001112122211 1222221 1 11111222111 1123577
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|++ |+++++||.||+||++|+||
T Consensus 398 -~~TGD-l~~~d~~-G~l~i~GR~~~~i~~~G~~v 429 (516)
T PRK13383 398 -TSTGD-MGYLDNA-GRLFIVGREDDMIISGGENV 429 (516)
T ss_pred -eecce-eEEEcCC-ccEEEeccccceEEECCEEE
Confidence 67999 9999997 99999999999999999885
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=388.84 Aligned_cols=402 Identities=17% Similarity=0.142 Sum_probs=304.9
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEEC--------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFE--------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~--------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
.....|+++.|.+.+..+|+.+++-.. .+.+||.|..+++..++..|++.|+++++.|||+.-|++||+++.
T Consensus 71 ~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~ 150 (691)
T KOG1256|consen 71 FDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISE 150 (691)
T ss_pred CCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhH
Confidence 345689999999999999999999654 367899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEc-cchHHHHHHHHH--hcCCCeEEEEeCCCCCCCCCCCCC----
Q psy8155 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYG-AELTDAVQEIST--SLGSNVKLFSWSPDTDSSSSPVPR---- 348 (617)
Q Consensus 276 lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~-~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~---- 348 (617)
.||...|++.|||...++++.+.+|++++.+.+++++ ++..+.+.+... .++....++.+++..........+
T Consensus 151 ~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~ 230 (691)
T KOG1256|consen 151 MACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVE 230 (691)
T ss_pred HHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeE
Confidence 9999999999999999999999999999999999999 445555555444 255667788888766443333333
Q ss_pred cCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HH---hCCCCCCEEEEcCc
Q psy8155 349 SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQ---IGFRTKDRFYTPLP 422 (617)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~---~~~~~~d~~l~~~p 422 (617)
..+|+++.+.+.........++.|+|.|.|+|||||||.|||||+||+|++..+.... .. ......|++++++|
T Consensus 231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP 310 (691)
T KOG1256|consen 231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP 310 (691)
T ss_pred EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence 6778888776643322221366899999999999999999999999999999654321 11 12234699999999
Q ss_pred chhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcC-----------------------
Q psy8155 423 LYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST----------------------- 479 (617)
Q Consensus 423 ~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~----------------------- 479 (617)
++|++..+.+.+ .+..|+++.+.+ -|+..+.+.|++.++|.+.+||.+|+.+.+.
T Consensus 311 LAHi~er~~~~~-~~~~G~~IgF~~-gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k 388 (691)
T KOG1256|consen 311 LAHIFERVVELY-TFYIGAKIGFAR-GDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK 388 (691)
T ss_pred HHHHHHHHHHHh-HhhcccEEEEec-CChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999877765 668999999987 4899999999999999999999998866531
Q ss_pred -------CCCC-CCc--------------cCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CCCC
Q psy8155 480 -------PEKP-EDK--------------AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DINK 533 (617)
Q Consensus 480 -------~~~~-~~~--------------l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~ 533 (617)
+... ... -.++|.++ ++++++++...++..+++ +++++||+|||.+.+. .+++
T Consensus 389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~-~v~eGYGlTEts~g~~~~~~~d 467 (691)
T KOG1256|consen 389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGC-RVLEGYGLTETSAGTTLTLPGD 467 (691)
T ss_pred HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCc-eeeecccccccCCceEeccCCC
Confidence 0000 000 12466666 455999999999988887 7999999999974443 2222
Q ss_pred CCCHHHHHHHHhhcCCCCCc---------------CcEEEEeecccCCccchh---hhHHHhhcCCCCCccCCeeEEEeC
Q psy8155 534 SLDVSAVSEGIKKALPSYAR---------------PLFIRCLREVEMTGTYKL---KKLDLQKEGFDPNVIQDRLYYLSS 595 (617)
Q Consensus 534 ~~~~~~l~~~l~~~Lp~~~~---------------P~~~~~~~~lP~t~~GK~---dr~~L~~~g~~~~~TGD~lg~~d~ 595 (617)
. .. .+++..+|...+ -..+.+.+..-..++-|- -..++.++||.+ ||| +|+||+
T Consensus 468 ~-~l----gsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLh--TGD-iG~~~p 539 (691)
T KOG1256|consen 468 N-VL----GSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLH--TGD-IGEWDP 539 (691)
T ss_pred C-CC----CCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccc--ccc-ceeECC
Confidence 2 11 122222222111 012333333333333332 345577999955 999 999999
Q ss_pred CCceeeCCHHHHHHHh-cCCcCC
Q psy8155 596 KGVYEELTPEVYKDLV-QGNIRL 617 (617)
Q Consensus 596 d~G~l~i~GR~~d~I~-~~G~~v 617 (617)
+ |.|.|+||+|++|| .+||+|
T Consensus 540 ~-G~l~IidRkK~ifklaqGEyV 561 (691)
T KOG1256|consen 540 N-GTLKIIDRKKNIFKLAQGEYV 561 (691)
T ss_pred C-ccEEEEecccceEEcCCCCcc
Confidence 7 99999999999999 599986
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=400.08 Aligned_cols=402 Identities=21% Similarity=0.217 Sum_probs=291.3
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
.+...++.++|.++++++|+++|+++.++++||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 85 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHh-cCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTS-LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
+++|+++..+.+++.++++++++++++++++.. +.+...... .+....++.++....... ......+.....
T Consensus 86 ~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 163 (540)
T PRK06164 86 TVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP--APAPGARVQLFA 163 (540)
T ss_pred EEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC--CCCccccccccc
Confidence 999999999999999999999999999987642 222221111 112223444431111000 000000111111
Q ss_pred cCCCCCC--CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 358 EVPTSPP--SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 358 ~~~~~~~--~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
....... .......++++++++|||||||+||||+++|+++.+.+......+++.+++++++.+|++|..++ ..++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~ 242 (540)
T PRK06164 164 LPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGF-STLLG 242 (540)
T ss_pred ccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHH-HHHHH
Confidence 1000000 00112346889999999999999999999999999999999999999999999999999999996 67899
Q ss_pred HhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--c-cCCCHHHHHHHHHHcCc
Q psy8155 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--G-NGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 436 ~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--G-e~l~~~~~~~~~~~~~~ 512 (617)
++..|+++++.+.+++..+++.|+++++|++..+|+++..|++.. .....+++++.+. | .+...++.+++.+. +.
T Consensus 243 ~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (540)
T PRK06164 243 ALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR-GV 320 (540)
T ss_pred HHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc-CC
Confidence 999999999999999999999999999999999999999998872 2345678898775 3 33455555555544 54
Q ss_pred ccccccccccccceEEeCCCCCCCHHHHHHHHhhcC-CCC---------------CcCcEEEEeecccCCccchhhhHHH
Q psy8155 513 AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKAL-PSY---------------ARPLFIRCLREVEMTGTYKLKKLDL 576 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~L-p~~---------------~~P~~~~~~~~lP~t~~GK~dr~~L 576 (617)
++++.||+||+...+...........-....+..+ |.. .....+.+-. |....|+.+....
T Consensus 321 -~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~ 397 (540)
T PRK06164 321 -PLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRA--PSLMRGYLDNPDA 397 (540)
T ss_pred -ceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEec--ccccccccCCchh
Confidence 79999999999655431111000000000000000 000 0011111111 2222455544433
Q ss_pred -----hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 577 -----QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 577 -----~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+|| ++||| +|++|++ |+++|.||.||+||++|+||
T Consensus 398 t~~~~~~~~~--~~TGD-l~~~~~~-g~l~~~GR~~~~i~~~G~~i 439 (540)
T PRK06164 398 TARALTDDGY--FRTGD-LGYTRGD-GQFVYQTRMGDSLRLGGFLV 439 (540)
T ss_pred hhhcccCCCc--eecCC-eEEEcCC-ceEEEEeecCCeEEECCEEc
Confidence 34567 78999 9999997 99999999999999999986
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=393.21 Aligned_cols=387 Identities=16% Similarity=0.225 Sum_probs=296.2
Q ss_pred HHHHHHH-HhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecC
Q psy8155 211 ADIFREH-AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 211 ~~~~~~~-a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpld 289 (617)
.++++++ ++.+|+++|+++.++.+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++||+++|++++|++
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 86 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALN 86 (508)
T ss_pred HHHHHHHHhcccCCceEEEeCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeecc
Confidence 4555665 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCC
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 369 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (617)
+.++.+++.++++.+++++++++.+..+.+.+....++....++..+..... ...+.+......... ....
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~ 157 (508)
T TIGR02262 87 TLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAG-------EVQLAELLATESEQF--KPAA 157 (508)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcc-------cccHHHHhhcCCCcc--CCCC
Confidence 9999999999999999999999988877777666555555555555432111 222333322221111 1123
Q ss_pred CCCCCeEEEEEccCCCCCCceEEechHHHHHHHHH-HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA-IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 370 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
..++++++|+|||||||.||||+++|+++...+.. ....++++++|+++..+|++|+.++...++.++..|+++++.++
T Consensus 158 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 237 (508)
T TIGR02262 158 TQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGE 237 (508)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCC
Confidence 45789999999999999999999999999887765 45677899999999999999998876778889999999999864
Q ss_pred -CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccc
Q psy8155 449 -FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525 (617)
Q Consensus 449 -~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 525 (617)
.++..+++.|+++++|++.++|+++..++..........+++|.++ |+++++++.+.|.+.++. ++++.||+||+.
T Consensus 238 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~-~v~~~YG~tE~~ 316 (508)
T TIGR02262 238 RPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV-DIVDGIGSTEML 316 (508)
T ss_pred CCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCC-chhhCccccccC
Confidence 6899999999999999999999999988876544444567888766 888999999999999986 799999999996
Q ss_pred eEEeCC-CCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeecccCCccchhhhHHHh----hcCCCCCcc
Q psy8155 526 AAILDI-NKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLREVEMTGTYKLKKLDLQ----KEGFDPNVI 586 (617)
Q Consensus 526 ~~v~~~-~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~lP~t~~GK~dr~~L~----~~g~~~~~T 586 (617)
...... ....... ..+..+|.+. .+..+++-. |....|+.+...+. ..+| ++|
T Consensus 317 ~~~~~~~~~~~~~~----~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~--~~~~~gY~~~~~~~~~~~~~~~--~~T 388 (508)
T TIGR02262 317 HIFLSNLPGDVRYG----TSGKPVPGYRLRLVGDGGQDVAAGEPGELLISG--PSSATMYWNNRAKTRDTFQGEW--TRS 388 (508)
T ss_pred ceeecCCccCCCCC----CcCCCCCCcEEEEECCCCCCCCCCCeeEEEEec--CccccccCCCHHHhHhhhhcCc--eec
Confidence 443311 1100000 0111111110 011111111 12223333332222 3567 789
Q ss_pred CCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 587 QDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 587 GD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|| +++++++ |+++++||.||+||++|++|
T Consensus 389 GD-~~~~~~~-g~~~~~gR~~d~i~~~G~~v 417 (508)
T TIGR02262 389 GD-KYVRNDD-GSYTYAGRTDDMLKVSGIYV 417 (508)
T ss_pred cc-eEEEcCC-ccEEEeccccceeeeCCEEE
Confidence 99 9999997 99999999999999999875
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=397.56 Aligned_cols=396 Identities=18% Similarity=0.178 Sum_probs=289.7
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|+++++++|+++|+++.++.+||.||.++++++|++|.+.|+++|++|+++++|+.+++++++|++++|++++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v 99 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVV 99 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEECCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccch--HHHHHHHHHhcCCCeEEEEeCCCCCCC-------CCCCCCcCCcchhhc
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAEL--TDAVQEISTSLGSNVKLFSWSPDTDSS-------SSPVPRSQALSPLLS 357 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~ 357 (617)
|++|.++.+++.+++++++++.+++++.. .+...+.... .....+++++...... .........+.+++.
T Consensus 100 ~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 100 HLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred ecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 99999999999999999999999998632 1222221111 1112333333211000 000011223333333
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh------CCCCCCEEEEcCcchhhHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI------GFRTKDRFYTPLPLYHTAGGAM 431 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~------~~~~~d~~l~~~p~~~~~~~~~ 431 (617)
..... .......+++.++++|||||||.||||+++|+++.+..... ..+ .....+++++..|++|..++..
T Consensus 179 ~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 255 (541)
T TIGR03205 179 GAAAP--AEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV 255 (541)
T ss_pred cCCCC--CCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence 21111 11123567899999999999999999999999987655432 222 2234578999999999988777
Q ss_pred HHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHH
Q psy8155 432 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDR 509 (617)
Q Consensus 432 ~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~ 509 (617)
.++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.++ |+++++++.+++.+.
T Consensus 256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~ 335 (541)
T TIGR03205 256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERK 335 (541)
T ss_pred HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHH
Confidence 788999999999998889999999999999999999999999999876544445677898887 888999999999888
Q ss_pred cCcccccccccccccceEEeCCC--CCCCHHHHHHHHhhcCCCC----------------CcCcEEEEeecccCCccchh
Q psy8155 510 FRIAQIGEFYGATEGMAAILDIN--KSLDVSAVSEGIKKALPSY----------------ARPLFIRCLREVEMTGTYKL 571 (617)
Q Consensus 510 ~~~~~l~n~YG~TE~~~~v~~~~--~~~~~~~l~~~l~~~Lp~~----------------~~P~~~~~~~~lP~t~~GK~ 571 (617)
++. .+++.||+||+...+.... ...... .++..+|.. ..+..+.+-. |.-..|+.
T Consensus 336 ~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~----~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~--~~~~~gy~ 408 (541)
T TIGR03205 336 TGL-KLKSGWGMTETCSPGTGHPPEGPDKPG----SIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRG--PNVTRGYW 408 (541)
T ss_pred hCC-CeecccccccCCcccccCCCCCCCCCC----CcceeccCceeEEEecCCCCccCCCCCeeEEEEec--CCcccccc
Confidence 875 7999999999965443111 000000 011111111 0011121111 11123444
Q ss_pred hhHHHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++..+.+ .+| ++||| ++++++| |+++|+||.||+||++|+||
T Consensus 409 ~~~~~~~~~~~~~~--~~TGD-~~~~~~~-g~l~i~GR~~~~i~~~G~~i 454 (541)
T TIGR03205 409 NRPEESAEAFVGDR--FLTGD-IGYMDTD-GYFFLVDRKKDMIISGGFNV 454 (541)
T ss_pred CChhhhHhhhccCC--cccCc-eEEEcCC-ceEEEEccccCeEEECCEEE
Confidence 4433332 345 77999 9999997 99999999999999999986
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=396.70 Aligned_cols=401 Identities=18% Similarity=0.239 Sum_probs=297.5
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
.++.++|+++++.+|+++|+.+.++.+||.||+++++++|++|.+.|+++|++|+++++|+.+++++++|++++|++++|
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~ 112 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVP 112 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCC--CCCC-CCC--------CcCCcchhh
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD--SSSS-PVP--------RSQALSPLL 356 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~-~~~--------~~~~~~~~~ 356 (617)
++|.++.+++.+++++++++++++++...+.+.+....... ..++..+.... .... ... ....+.++.
T Consensus 113 l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (567)
T PRK06178 113 VSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSL-RHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLL 191 (567)
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCc-ceEEEeccccccccccccccccccccccccccccccHH
Confidence 99999999999999999999999999887777665443321 22222221110 0000 000 000111111
Q ss_pred ccCCC-CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH-HhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 357 SEVPT-SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY-QIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 357 ~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+.... ..........++++|+|+|||||||.||||+++|+++......... ...+.++|+++..+|++|..++...++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 271 (567)
T PRK06178 192 PALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLL 271 (567)
T ss_pred HHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHH
Confidence 11110 0111112356789999999999999999999999999876654433 356788999999999999998777788
Q ss_pred HHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee----ccCCCHHHHHHHHHHc
Q psy8155 435 QALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF----GNGLRPQIWSEFVDRF 510 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~----Ge~l~~~~~~~~~~~~ 510 (617)
.+|..|+++++.+++++..+++.|+++++|.+..+|..+..++........++++++.+. |+.+++++.+.|.+.+
T Consensus 272 ~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 351 (567)
T PRK06178 272 FPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALT 351 (567)
T ss_pred HHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999998877655555667777653 5789999999999999
Q ss_pred CcccccccccccccceEEe-CCC---CCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccc
Q psy8155 511 RIAQIGEFYGATEGMAAIL-DIN---KSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTY 569 (617)
Q Consensus 511 ~~~~l~n~YG~TE~~~~v~-~~~---~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~G 569 (617)
+...+.+.||+||+...+. ... ...+.......++..+|.. .+.+++ + + |....|
T Consensus 352 g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~----~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~g 427 (567)
T PRK06178 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGT----EFKICDFETGELLPLGAEGEIVVRTPSLLKG 427 (567)
T ss_pred CCcccccccccccccccceeccccccCccccccCCcccccccCCc----EEEEEcCCCCCcCCCCCceEEEEECCccccc
Confidence 8754456899999854332 110 0000000000111222211 122222 0 1 222345
Q ss_pred hhhhHHHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 570 KLKKLDLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 570 K~dr~~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+.+...+.+ +|| ++||| +|++++| |+++|+||.||+||++|+||
T Consensus 428 Y~~~~~~~~~~~~dg~--~~TGD-l~~~~~~-g~l~i~GR~~d~i~~~G~~i 475 (567)
T PRK06178 428 YWNKPEATAEALRDGW--LHTGD-IGKIDEQ-GFLHYLGRRKEMLKVNGMSV 475 (567)
T ss_pred ccCChhhhhhcccCCc--eeecc-eEEEecC-CeEEEEecccccEEECCEEE
Confidence 555444433 577 77999 9999997 99999999999999999885
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=397.81 Aligned_cols=396 Identities=16% Similarity=0.194 Sum_probs=290.5
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
.++.++|.++++++|+++|+++.++.+||.||+++++++|++|.+. |+++|++|+++++|+++++++++||+++|++++
T Consensus 24 ~~~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v 103 (562)
T PRK12492 24 KSVVEVFERSCKKFADRPAFSNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEecCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEe
Confidence 5799999999999999999999999999999999999999999985 999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeC--CCCCC-----------------CCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS--PDTDS-----------------SSSPVP 347 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~-----------------~~~~~~ 347 (617)
|++|.++.+++.+++++++++++++++...+.+..+...... ..++... +.... ......
T Consensus 104 ~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (562)
T PRK12492 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGI-EYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLP 182 (562)
T ss_pred ccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCc-eEEEeechhhccccccchhcccccccccccccccCCc
Confidence 999999999999999999999999987665555443322111 1111110 00000 000000
Q ss_pred CcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC---------CCC-CCEE
Q psy8155 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG---------FRT-KDRF 417 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---------~~~-~d~~ 417 (617)
....+++........ ........++++++|+|||||||.||||+++|+++...+......+. +.. ++++
T Consensus 183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (562)
T PRK12492 183 QAVPFKQALRQGRGL-SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVM 261 (562)
T ss_pred ccccHHHHHhccCCC-CCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEE
Confidence 112233332221111 11112346789999999999999999999999999877766555443 223 3567
Q ss_pred EEcCcchhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--
Q psy8155 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-- 494 (617)
Q Consensus 418 l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~-- 494 (617)
+...|++|..++...++..+..|+++++.. ..++..+++.|+++++|++..+|+++..|++.+.....+++++|.++
T Consensus 262 ~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~g 341 (562)
T PRK12492 262 IAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSG 341 (562)
T ss_pred EEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEec
Confidence 889999999987666777888999877664 57899999999999999999999999999987665556678999887
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCC-CCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----------
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDIN-KSLDVSAVSEGIKKALPSYARPLFIRCLRE----------- 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----------- 562 (617)
|+++++++.++|.+.++. ++++.||+||+........ ..... ...++..+|.. .+.++++
T Consensus 342 G~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~---~~~~G~p~~~~----~v~ivd~~~~~~~~g~~G 413 (562)
T PRK12492 342 GTALVKATAERWEQLTGC-TIVEGYGLTETSPVASTNPYGELAR---LGTVGIPVPGT----ALKVIDDDGNELPLGERG 413 (562)
T ss_pred cccCCHHHHHHHHHHhCC-ceeeccCccccCceeeecCCccccc---CCccceecCCC----EEEEECCCCCCCCCCCce
Confidence 888999999999998875 7999999999865444211 10000 00111112211 1222221
Q ss_pred -----ccCCccchhhhHHH-----hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 563 -----VEMTGTYKLKKLDL-----QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 563 -----lP~t~~GK~dr~~L-----~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
-|....|+.++... ..+|| ++||| +|++|++ |+++|+||.||+||++|+||
T Consensus 414 el~v~g~~~~~gY~~~~~~t~~~~~~~g~--~~TGD-~g~~~~~-G~l~i~GR~~~~i~~~G~~i 474 (562)
T PRK12492 414 ELCIKGPQVMKGYWQQPEATAEALDAEGW--FKTGD-IAVIDPD-GFVRIVDRKKDLIIVSGFNV 474 (562)
T ss_pred EEEEeCCccccccccCchhhhhcccCCCc--eecCc-EEEECCC-CeEEEecccCCeEEECCEEE
Confidence 12223344443332 24577 77999 9999998 99999999999999999986
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=392.62 Aligned_cols=401 Identities=18% Similarity=0.189 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
+.+..++|++.++.+|+++|+.+.+..+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v 96 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIHGDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLN 96 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEECCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCC-CCCCCCcCCcchhhccCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS-SSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
|++|+++.+++..++++++++.++++.+..+.+.+.....+.. +.+.++...... ........++.+++.........
T Consensus 97 pl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (545)
T PRK08162 97 TLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGP-KPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAW 175 (545)
T ss_pred ccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCC-ceEEEecCccccccCCCcccccHHHHhccCCccccc
Confidence 9999999999999999999999999998877776654443332 122222111100 00001122344443322111111
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
....+.++.++|+|||||||.||||+++|+++..........+++..++++++.+|++|..++...++ ..+.|++.++
T Consensus 176 -~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~-~~~~~g~~~~ 253 (545)
T PRK08162 176 -TLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWT-VAARAGTNVC 253 (545)
T ss_pred -cCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHH-HHHHccEEEE
Confidence 11224568999999999999999999999998776666666778888999999999999888655444 4445666666
Q ss_pred cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccC-ceeeee-ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH-NVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 446 ~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~-~lr~v~-Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
..++++..+++.|+++++|++..+|+++..|++........+. .++.+. |+.+++++.+.|.+. +. ++++.||+||
T Consensus 254 ~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~YG~tE 331 (545)
T PRK08162 254 LRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI-GF-DLTHVYGLTE 331 (545)
T ss_pred eCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh-CC-ceeecccccc
Confidence 6778999999999999999999999999999976544332333 344444 788999999888764 54 7999999999
Q ss_pred cceEEe-C-CCCCCC--HHHHHHHHhh--cCCCCCcCcEEEEeec-------------------ccCCccchhhhHHHh-
Q psy8155 524 GMAAIL-D-INKSLD--VSAVSEGIKK--ALPSYARPLFIRCLRE-------------------VEMTGTYKLKKLDLQ- 577 (617)
Q Consensus 524 ~~~~v~-~-~~~~~~--~~~l~~~l~~--~Lp~~~~P~~~~~~~~-------------------lP~t~~GK~dr~~L~- 577 (617)
+...+. . ...... ...-...... ..+ ++....+.+++. -|....|+.++....
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~ 410 (545)
T PRK08162 332 TYGPATVCAWQPEWDALPLDERAQLKARQGVR-YPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATE 410 (545)
T ss_pred cCcceeecccccccccCCccchhhccCCCCcc-cCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhH
Confidence 843222 1 110000 0000000000 000 000011222221 122223444433333
Q ss_pred ---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 411 ~~~~~g~--~~TGD-l~~~d~d-g~l~~~GR~~~~i~~~G~~v 449 (545)
T PRK08162 411 EAFAGGW--FHTGD-LAVLHPD-GYIKIKDRSKDIIISGGENI 449 (545)
T ss_pred HHhhCCC--cccCc-eEEEcCC-ccEEEEecccceEEeCCEEE
Confidence 3566 78999 9999998 99999999999999999886
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=394.38 Aligned_cols=366 Identities=14% Similarity=0.198 Sum_probs=278.3
Q ss_pred HHHHhhCCCceEEEE--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCC
Q psy8155 215 REHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292 (617)
Q Consensus 215 ~~~a~~~p~~~Al~~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~ 292 (617)
+.+++.+|+++|+.+ .++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||++++|++++|+++.+
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 81 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence 457788999999987 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCC
Q psy8155 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372 (617)
Q Consensus 293 p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (617)
+.+++.+++++++++++++++..... ....+. ++++................+
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~----------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ 134 (488)
T PRK09088 82 SASELDALLQDAEPRLLLGDDAVAAG----------RTDVED-----------------LAAFIASADALEPADTPSIPP 134 (488)
T ss_pred CHHHHHHHHHhCCCCEEEEcchhhcc----------cccccc-----------------hhhhhhhccccccccCCCCCC
Confidence 99999999999999999998654321 000111 111111100000111123356
Q ss_pred CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHH
Q psy8155 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452 (617)
Q Consensus 373 ~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~ 452 (617)
+++++++|||||||.||+|.++|+++...+.+......+..+|++++.+|++|..++...++.++..|+++++.+.+++.
T Consensus 135 ~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~ 214 (488)
T PRK09088 135 ERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK 214 (488)
T ss_pred CCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHH
Confidence 78999999999999999999999999988888777778899999999999999999877788899999999999889999
Q ss_pred HHHHHHH--HcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEE
Q psy8155 453 NYFSDVC--KYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528 (617)
Q Consensus 453 ~l~~~i~--~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v 528 (617)
.++..+. ++++|++..+|++++.+.+........++++|.++ |++++.+..+++.+. +. .+++.||+||+...+
T Consensus 215 ~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~-~v~~~YG~TE~~~~~ 292 (488)
T PRK09088 215 RTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD-GI-PMVDGFGMSEAGTVF 292 (488)
T ss_pred HHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh-CC-ceeeeeccccccccc
Confidence 9999886 48899999999999999887655555678899887 777999988888765 54 699999999986433
Q ss_pred eCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHH-----HhhcCCCCCccC
Q psy8155 529 LDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLD-----LQKEGFDPNVIQ 587 (617)
Q Consensus 529 ~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~-----L~~~g~~~~~TG 587 (617)
...........-...+...+|.. .+.++++ + |....|+.++.. +..+|| ++||
T Consensus 293 ~~~~~~~~~~~~~~~vG~~~~~~----~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~--~~TG 366 (488)
T PRK09088 293 GMSVDCDVIRAKAGAAGIPTPTV----QTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGW--FRTG 366 (488)
T ss_pred ccCCCcccccccCCccccCCCCc----EEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCC--eeec
Confidence 21100000000000011111111 1222221 1 122234444333 334677 7799
Q ss_pred CeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 588 DRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 588 D~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
| +|++|++ |+++|+||.||+||.+|+||
T Consensus 367 D-l~~~~~~-g~l~i~GR~~d~i~~~G~~i 394 (488)
T PRK09088 367 D-IARRDAD-GFFWVVDRKKDMFISGGENV 394 (488)
T ss_pred c-eEEEcCC-CcEEEeccccceEEeCCEEE
Confidence 9 9999997 99999999999999999886
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=395.91 Aligned_cols=379 Identities=19% Similarity=0.189 Sum_probs=289.2
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++.+.|.++++.+|+++|+.+.++.+||+||.++++++|+.|.+.|+++|++|+++++++.++++++|||+++|++++|+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~ 80 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV 80 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
++.++.+++..+++.++++.++++.+...... ...++.++. .......... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~~~~~~~--------------~~~~~~~~~~--~~~~~ 136 (502)
T TIGR01734 81 DTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQIITLSA--------------LEQAETSGGP--VSFDH 136 (502)
T ss_pred CCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCceEEchH--------------hhhhhhhcCC--ccccc
Confidence 99999999999999999999999876543221 111222211 0011111110 11112
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
...+++.++|+|||||||.||||+++|+++...+.+....+++..+++++...|++|..++ ..++.++..|+++++.++
T Consensus 137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~ 215 (502)
T TIGR01734 137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDK 215 (502)
T ss_pred cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCH
Confidence 3467899999999999999999999999999999998888999999999999999998885 778899999999999875
Q ss_pred ---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 449 ---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 449 ---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
.++..+++.+.++++|.+..+|++++.++.........+++++.++ |+++++++.+++.+.++..++++.||+||
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE 295 (502)
T TIGR01734 216 DITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTE 295 (502)
T ss_pred HHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCc
Confidence 5889999999999999999999999888766544455677887766 88899999999999997778999999999
Q ss_pred cceEEeC--CCCCCCHHHHHHHHhhcCCCC----------CcC----cEEEEeecccCCccchhhhHHHhh------cCC
Q psy8155 524 GMAAILD--INKSLDVSAVSEGIKKALPSY----------ARP----LFIRCLREVEMTGTYKLKKLDLQK------EGF 581 (617)
Q Consensus 524 ~~~~v~~--~~~~~~~~~l~~~l~~~Lp~~----------~~P----~~~~~~~~lP~t~~GK~dr~~L~~------~g~ 581 (617)
+...+.. .........-...+...+|.. .+| ..+.+.+ |....|+.+...... +|-
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~~~~~~ 373 (502)
T TIGR01734 296 ATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVG--PSVSKGYLNNPEKTAEAFFSHEGQ 373 (502)
T ss_pred ceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEcc--ccccccccCCcccchHhheeCCCc
Confidence 8644431 111000000000112222211 011 1222222 222334443333222 221
Q ss_pred CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|++||| +|++|+ ++++|+||.||+||++|+||
T Consensus 374 ~~~~TGD-lg~~~~--~~l~i~GR~~d~i~~~G~~v 406 (502)
T TIGR01734 374 PAYRTGD-AGTITD--GQLFYQGRLDFQIKLHGYRI 406 (502)
T ss_pred EEEECCC-EEEEEC--CEEEEeccccCeEEECcEEe
Confidence 2377999 999997 59999999999999999986
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=393.20 Aligned_cols=401 Identities=16% Similarity=0.166 Sum_probs=285.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..+....|.+.++.+|+++|++++++.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v 98 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVN 98 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEECCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEE
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC-------CCeEEEEeCCCCCCCC----CCCCCcCCcchh
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-------SNVKLFSWSPDTDSSS----SPVPRSQALSPL 355 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~----~~~~~~~~~~~~ 355 (617)
|++|.++.+++.+++++++++++++++...+...++...+. ....++.++....... ....+...+.++
T Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T PLN02479 99 CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKF 178 (567)
T ss_pred EeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHH
Confidence 99999999999999999999999999887665554433221 1112333332111000 001112234444
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
+........ ..+....++.++++|||||||.||||+++|+++..........++++++++++..+|++|..++...++.
T Consensus 179 ~~~~~~~~~-~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~ 257 (567)
T PLN02479 179 LETGDPEFA-WKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTL 257 (567)
T ss_pred Hhccccccc-cCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHH
Confidence 433211111 1112234578889999999999999999999987766666667888999999999999999886554444
Q ss_pred HhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC-CccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-DKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 436 ~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
++..|.+++ ...+++..+++.++++++|++..+|+++..|.+...... ..+++++.++ |+++++++.++|.+. +.
T Consensus 258 ~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~ 335 (567)
T PLN02479 258 AALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK-GF 335 (567)
T ss_pred HhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc-CC
Confidence 566665554 467899999999999999999999999999987654322 2467887665 888999999998875 54
Q ss_pred ccccccccccccceEEe--C--CC-CCCC-HHHHH--HHHhhcCCC----------CC--------cCcEEEEeecccCC
Q psy8155 513 AQIGEFYGATEGMAAIL--D--IN-KSLD-VSAVS--EGIKKALPS----------YA--------RPLFIRCLREVEMT 566 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~--~--~~-~~~~-~~~l~--~~l~~~Lp~----------~~--------~P~~~~~~~~lP~t 566 (617)
++++.||+||+..... . +. .... ..... .......+. .+ .+..+.+.. |..
T Consensus 336 -~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g--~~~ 412 (567)
T PLN02479 336 -RVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRG--NMV 412 (567)
T ss_pred -ceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEec--cch
Confidence 7999999999843211 1 00 0000 00000 000000000 00 011111111 111
Q ss_pred ccchhhhHHHh----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 567 GTYKLKKLDLQ----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 567 ~~GK~dr~~L~----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|+.+..... .+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 413 ~~GY~~~~~~t~~~~~~g~--~~TGD-l~~~~~~-g~l~~~GR~~d~i~~~G~~v 463 (567)
T PLN02479 413 MKGYLKNPKANEEAFANGW--FHSGD-LGVKHPD-GYIEIKDRSKDIIISGGENI 463 (567)
T ss_pred hhhhhcCcccccchhcCCc--eecce-eEEEcCC-ccEEEeccccceEEeCCEEE
Confidence 12333222222 3566 78999 9999997 99999999999999999986
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=393.85 Aligned_cols=398 Identities=17% Similarity=0.207 Sum_probs=291.9
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|.++++++|+++|+++.++.+||+||+++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v 101 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVV 101 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEEcCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCC-CC-----------------CCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD-SS-----------------SSPVPR 348 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-----------------~~~~~~ 348 (617)
|++|.++.+++.+++++++++++++++.....+........ ...++....... .. ......
T Consensus 102 ~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (557)
T PRK07059 102 NVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTA-VKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPG 180 (557)
T ss_pred ccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccC-CceeEEecccccccccccccccccccccccccccCCCC
Confidence 99999999999999999999999999877666555433221 122222211000 00 000011
Q ss_pred cCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh----CCC---CCCEEEEcC
Q psy8155 349 SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI----GFR---TKDRFYTPL 421 (617)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~----~~~---~~d~~l~~~ 421 (617)
...+.+.+...... ........++++|+|+|||||||.||||+++|+++...+....... ... ....++...
T Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (557)
T PRK07059 181 HVRFNDALAEGARQ-TFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCAL 259 (557)
T ss_pred cccHHHHhhccCCC-CCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeC
Confidence 12222332221111 1112345788999999999999999999999999987654433222 111 235678889
Q ss_pred cchhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCC
Q psy8155 422 PLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGL 498 (617)
Q Consensus 422 p~~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l 498 (617)
|++|..++....+.++..|++.++.+ ..++..+++.++++++|.+..+|+++..++........+++++|.++ |+++
T Consensus 260 pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~ 339 (557)
T PRK07059 260 PLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAV 339 (557)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccC
Confidence 99998887667778888999877766 46899999999999999999999999999987665556678898876 6779
Q ss_pred CHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c-----------
Q psy8155 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V----------- 563 (617)
Q Consensus 499 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l----------- 563 (617)
++.+.++|.+.++. .+++.||+||++..+........ .....+...+|. ..+.++++ +
T Consensus 340 ~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~--~~~~~vG~p~~g----~~v~i~d~~~~~~~~g~~Gel~v~ 412 (557)
T PRK07059 340 QRPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDAT--EFSGTIGLPLPS----TEVSIRDDDGNDLPLGEPGEICIR 412 (557)
T ss_pred CHHHHHHHHHHhCC-CeeeccccccccchhhcCCCCCC--CcCCcccCccCC----cEEEEECCCCCCCCCCCceEEEEe
Confidence 99999999998876 79999999998654431111000 000011111111 11222221 1
Q ss_pred -cCCccchhhhHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 -EMTGTYKLKKLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 -P~t~~GK~dr~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++.. +..+|| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 413 g~~~~~gY~~~~~~~~~~~~~~g~--~~TGD-l~~~~~~-g~~~~~GR~~~~i~~~G~~i 468 (557)
T PRK07059 413 GPQVMAGYWNRPDETAKVMTADGF--FRTGD-VGVMDER-GYTKIVDRKKDMILVSGFNV 468 (557)
T ss_pred CCccchhhhcCHHHHhhhcccCCc--eecCc-EEEEcCC-CcEEEecccccceEECCEEE
Confidence 223344444433 335688 77999 9999997 99999999999999999985
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=392.30 Aligned_cols=400 Identities=15% Similarity=0.171 Sum_probs=293.2
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
.++.++|.++++++|+++|+++.++.+||+||.++++++|+.|. +.|+++|++|+++++|+.+++++++||+++|++++
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 104 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVV 104 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEECCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEe
Confidence 57999999999999999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCC--C-C----------------CCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDT--D-S----------------SSSPVP 347 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~----------------~~~~~~ 347 (617)
|++|.++.+++.+++++++++++++++.....+.+.....+. ..++..+... . . .....+
T Consensus 105 ~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (560)
T PRK08751 105 NVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPV-KQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRIN 183 (560)
T ss_pred ccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCc-cEEEEechhhhcccccchhhhhhhhhhhccccccCCC
Confidence 999999999999999999999999998877666655444332 2232221000 0 0 000000
Q ss_pred CcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC----CCCC-CEEEEcCc
Q psy8155 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG----FRTK-DRFYTPLP 422 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~-d~~l~~~p 422 (617)
....+.+........ ........++++++++|||||||.||||+++|+++...+.+....++ +.++ ++++...|
T Consensus 184 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
T PRK08751 184 GAIRFREALALGRKH-SMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALP 262 (560)
T ss_pred ccccHHHHHhccCCC-CCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecC
Confidence 111122222211111 11112346789999999999999999999999999888777665554 3333 56778899
Q ss_pred chhhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCC
Q psy8155 423 LYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLR 499 (617)
Q Consensus 423 ~~~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~ 499 (617)
++|..++....+.++..|+++++.. ..++..+++.|+++++|++..+|+++..+++.......+++++|.++ |++++
T Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~ 342 (560)
T PRK08751 263 LYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQ 342 (560)
T ss_pred hHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCC
Confidence 9999887666677788888877654 57899999999999999999999999999987665556678999887 78899
Q ss_pred HHHHHHHHHHcCcccccccccccccceEEeCCCCCC-C-HHHH-----------HHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSL-D-VSAV-----------SEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 500 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~-~-~~~l-----------~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
+++.++|.+.++. .+++.||+||+...+....... . ...+ .+.-...+|... ...+.+- . |..
T Consensus 343 ~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~-~Gel~v~-~-~~~ 418 (560)
T PRK08751 343 RSVAERWKQVTGL-TLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGE-IGELCIK-G-PQV 418 (560)
T ss_pred HHHHHHHHHHhCC-eEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCC-ceEEEEe-c-Ccc
Confidence 9999999998876 6999999999865443211100 0 0000 000001111111 1111111 1 222
Q ss_pred ccchhhhHHHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 567 GTYKLKKLDLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 567 ~~GK~dr~~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|+.++.... .+|| ++||| +|++|++ |+++++||.+|+||++|+||
T Consensus 419 ~~gy~~~~~~~~~~~~~~g~--~~TGD-~~~~~~~-g~l~i~GR~~d~i~~~G~~v 470 (560)
T PRK08751 419 MKGYWKRPEETAKVMDADGW--LHTGD-IARMDEQ-GFVYIVDRKKDMILVSGFNV 470 (560)
T ss_pred chhhcCChhhhhhccccCCC--ccccc-eEEEcCC-ceEEEEeechhheeECCEEE
Confidence 34555444333 3577 77999 9999997 99999999999999999986
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=397.94 Aligned_cols=384 Identities=17% Similarity=0.205 Sum_probs=276.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEECC---------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFEN---------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~---------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~ 278 (617)
+++.++|++++..+|+++|+++.+ +++||+||.++++++|++|.+.| .+|++|+++++|++++++++|||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 367899999999999999998642 68999999999999999999999 68999999999999999999999
Q ss_pred HhcCCeEEecCC---CCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC--CCeEEEEeCCCCCCCCCCCCCcCCcc
Q psy8155 279 SKLGVITALINH---NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG--SNVKLFSWSPDTDSSSSPVPRSQALS 353 (617)
Q Consensus 279 ~~aG~~~vpldp---~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 353 (617)
+++|++++|+++ ..+.+++.++++++++++++++++..+.+.+...... ....++.++... +.
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 147 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLD------------LD 147 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccc------------cc
Confidence 999999999997 4578999999999999999999887766654322111 111222222100 00
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh-C-----CCCCCEEEEcCcchhhH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-G-----FRTKDRFYTPLPLYHTA 427 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~-----~~~~d~~l~~~p~~~~~ 427 (617)
... . .......+++++||+|||||||.||||+++|+++.+.+.+....+ . ...++++++..|++|+.
T Consensus 148 ---~~~-~---~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 220 (578)
T PRK05850 148 ---SPR-G---SDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDM 220 (578)
T ss_pred ---cCC-c---cccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCc
Confidence 000 0 011234678999999999999999999999999988776655432 2 35678999999999999
Q ss_pred HHHHHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHH-HHHHcCC---CCCCCccCceeeee--ccC
Q psy8155 428 GGAMCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMC-RYLLSTP---EKPEDKAHNVRLMF--GNG 497 (617)
Q Consensus 428 ~~~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~-~~l~~~~---~~~~~~l~~lr~v~--Ge~ 497 (617)
+++..++.+++.|+++++.++ .++..+++.+++++++++ .+|+++ ..+.... .....+++++|.++ |++
T Consensus 221 g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~ 299 (578)
T PRK05850 221 GLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSER 299 (578)
T ss_pred hhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCC
Confidence 987889999999999999874 379999999999999865 556554 3333221 11233567898877 788
Q ss_pred CCHHHHHHHHHHcC-----cccccccccccccceEEeCC--CCCC-----CHHHHHH----HH----hhcCCCCCcCc--
Q psy8155 498 LRPQIWSEFVDRFR-----IAQIGEFYGATEGMAAILDI--NKSL-----DVSAVSE----GI----KKALPSYARPL-- 555 (617)
Q Consensus 498 l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~v~~~--~~~~-----~~~~l~~----~l----~~~Lp~~~~P~-- 555 (617)
++++++++|.+.++ ...+++.||+||+...+... +... +...... .+ ...++.+..|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~ 379 (578)
T PRK05850 300 VHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSP 379 (578)
T ss_pred CCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCC
Confidence 99999999999874 23689999999986544421 1100 0011000 00 11122222221
Q ss_pred EEEEeec-----c------------cCCccchhhhHHHhh----------------cCCCCCccCCeeEEEeCCCceeeC
Q psy8155 556 FIRCLRE-----V------------EMTGTYKLKKLDLQK----------------EGFDPNVIQDRLYYLSSKGVYEEL 602 (617)
Q Consensus 556 ~~~~~~~-----l------------P~t~~GK~dr~~L~~----------------~g~~~~~TGD~lg~~d~d~G~l~i 602 (617)
.+.+++. + |....|+.++....+ .|| ++||| +|++| | |++++
T Consensus 380 ~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w--~~TGD-l~~~~-~-G~l~~ 454 (578)
T PRK05850 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPW--LRTGD-LGFIS-E-GELFI 454 (578)
T ss_pred EEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCe--eeccc-eeeEE-C-CEEEE
Confidence 2333331 1 122234444333322 356 77999 99998 6 99999
Q ss_pred CHHHHHHHhcCCcCC
Q psy8155 603 TPEVYKDLVQGNIRL 617 (617)
Q Consensus 603 ~GR~~d~I~~~G~~v 617 (617)
+||+||+||++|+||
T Consensus 455 ~GR~~d~i~~~G~~i 469 (578)
T PRK05850 455 VGRIKDLLIVDGRNH 469 (578)
T ss_pred EcccccEEEECCeec
Confidence 999999999999987
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=388.70 Aligned_cols=398 Identities=18% Similarity=0.161 Sum_probs=285.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
.++.++|.+.++++|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|+.++++++|||+++|++++|
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQ 103 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEecCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeC--CCCCCCCC------------CC------C
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS--PDTDSSSS------------PV------P 347 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~------------~~------~ 347 (617)
++|.++.+++..+++.++++++++++.....+......... ..++... +....... .. .
T Consensus 104 i~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (563)
T PRK06710 104 TNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKI-EHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESE 182 (563)
T ss_pred cCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhcc-ceeEEeccccccccccccccchhhcccccccccccccc
Confidence 99999999999999999999999988765544333221111 1111110 00000000 00 0
Q ss_pred CcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH-HHhCCCC-CCEEEEcCcchh
Q psy8155 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGFRT-KDRFYTPLPLYH 425 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~-~d~~l~~~p~~~ 425 (617)
....+........ .........+++.++++|||||||.||||+++|+++........ ..++... ++++++..|++|
T Consensus 183 ~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 260 (563)
T PRK06710 183 TIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFH 260 (563)
T ss_pred hhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHH
Confidence 0000111100000 00001112357899999999999999999999999975543322 2344444 458899999999
Q ss_pred hHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHH
Q psy8155 426 TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 503 (617)
Q Consensus 426 ~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~ 503 (617)
..++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..++.........++++|.++ |+++++++.
T Consensus 261 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~ 340 (563)
T PRK06710 261 VYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQ 340 (563)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHH
Confidence 988766677789999999999889999999999999999999999999999987655555678898876 788999999
Q ss_pred HHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCC---------------cCcEEEEeecccCCcc
Q psy8155 504 SEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA---------------RPLFIRCLREVEMTGT 568 (617)
Q Consensus 504 ~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~---------------~P~~~~~~~~lP~t~~ 568 (617)
+++.+.++. .++|.||+||+.......... .. .....+...+|... .+..+.+-. |....
T Consensus 341 ~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~-~~-~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g--~~~~~ 415 (563)
T PRK06710 341 EKFETVTGG-KLVEGYGLTESSPVTHSNFLW-EK-RVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKG--PQIMK 415 (563)
T ss_pred HHHHHhhCC-CEecccccccCccccccCccc-cc-ccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEec--Cccch
Confidence 999998876 699999999985432211000 00 00000111111110 001111111 22223
Q ss_pred chhhhHHHh----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLDLQ----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~L~----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.+..... .+|| ++||| +|++|++ |+++++||.||+||++|+||
T Consensus 416 gY~~~~~~~~~~~~~g~--~~TGD-~~~~~~~-g~~~~~GR~dd~i~~~G~~v 464 (563)
T PRK06710 416 GYWNKPEETAAVLQDGW--LHTGD-VGYMDED-GFFYVKDRKKDMIVASGFNV 464 (563)
T ss_pred hhhCChHHHhhhcccCc--ccccc-eEEEcCC-CcEEEeeccccEEEECCEEE
Confidence 443333322 3567 77999 9999997 99999999999999999986
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=375.66 Aligned_cols=322 Identities=14% Similarity=0.109 Sum_probs=258.9
Q ss_pred EEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcC
Q psy8155 226 IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAG 305 (617)
Q Consensus 226 Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~ 305 (617)
++++.++++||+||.++++++|+.|. .|+++|++|+++++|+.+++++++|++++|++++|+|+..+.+++..++++++
T Consensus 1 ~~~~~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 1 MLIVNDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred CeEecCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 47788999999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCC
Q psy8155 306 VSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385 (617)
Q Consensus 306 ~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGST 385 (617)
++++++++.... . ... ....+++++||+||||||
T Consensus 80 ~~~~i~~~~~~~-----------------~---------------------~~~--------~~~~~~~~~~i~~TSGtT 113 (414)
T PRK08308 80 CHGLLYGESDFT-----------------K---------------------LEA--------VNYLAEEPSLLQYSSGTT 113 (414)
T ss_pred CCEEEecCcccc-----------------c---------------------ccC--------CCCCCCCceEEEECCCCC
Confidence 999998753100 0 000 023567899999999999
Q ss_pred CCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcE
Q psy8155 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465 (617)
Q Consensus 386 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~ 465 (617)
|.||||+++|+++.+.+.+....+++..+|+++..+|++|..+++..++.+|..|+++++.+..++..+++.++++++|+
T Consensus 114 G~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~ 193 (414)
T PRK08308 114 GEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHI 193 (414)
T ss_pred CCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeE
Confidence 99999999999999999888888999999999999999999998788999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHH
Q psy8155 466 GQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEG 543 (617)
Q Consensus 466 ~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~ 543 (617)
+..+|+++..+.+..... .+++.++ |+++++++.++|.+.. . +++|.||+||+.+........ .. ..
T Consensus 194 ~~~~P~~~~~l~~~~~~~----~~l~~~~~~G~~l~~~~~~~~~~~~-~-~~~~~YG~tE~~~~~~~~~~~-~~----~~ 262 (414)
T PRK08308 194 LYAVPLMLHILGRLLPGT----FQFHAVMTSGTPLPEAWFYKLRERT-T-YMMQQYGCSEAGCVSICPDMK-SH----LD 262 (414)
T ss_pred EEcCHHHHHHHHhcCCcc----ccccEEEEccCCCCHHHHHHHHHhC-C-hhhhccCccccCCeeecCCCC-CC----Cc
Confidence 999999999998764321 2455554 8889999999998873 3 799999999997544322110 00 01
Q ss_pred HhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 544 IKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 544 l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+...+|.. .+.+.+. ....|.+--+ ...+| ++||| +||+|+| |+++|+||.||+||++|+||
T Consensus 263 ~G~p~~~~----~~~~~~~--~~~~gel~v~--~~~~~--~~TGD-l~~~~~d-g~l~~~GR~~~~ik~~G~~v 324 (414)
T PRK08308 263 LGNPLPHV----SVSAGSD--ENAPEEIVVK--MGDKE--IFTKD-LGYKSER-GTLHFMGRMDDVINVSGLNV 324 (414)
T ss_pred cCccCCCe----EEEEecC--CCCCceEEEE--cCCce--EECCc-eEEECCC-ccEEEecccCCeEEECCEEE
Confidence 22223321 1122111 1111222110 12467 77999 9999998 99999999999999999986
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=383.19 Aligned_cols=350 Identities=16% Similarity=0.132 Sum_probs=271.4
Q ss_pred HHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHH
Q psy8155 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNS 296 (617)
Q Consensus 217 ~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~ 296 (617)
.++..++++|++++++++||+||.++++++|..|+ ++++|+++++|+++++++++||+++|++++|++|..+.++
T Consensus 9 ~~~~~~~~~a~~~~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~ 83 (471)
T PRK07787 9 VAAAADIADAVRIGGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAE 83 (471)
T ss_pred hhcccCCceEEEeCCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHH
Confidence 34567899999999999999999999999999996 4699999999999999999999999999999999999999
Q ss_pred HHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeE
Q psy8155 297 LLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376 (617)
Q Consensus 297 l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 376 (617)
+..+++++++++++++.+... .. ...+.+... ...+ . . .....+++++
T Consensus 84 l~~~l~~~~~~~il~~~~~~~------~~----~~~~~~~~~----------~~~~---------~-~--~~~~~~~~~a 131 (471)
T PRK07787 84 RRHILADSGAQAWLGPAPDDP------AG----LPHVPVRLH----------ARSW---------H-R--YPEPDPDAPA 131 (471)
T ss_pred HHHHHHhcCCCEEEecCCccc------cc----ccceeeecc----------cccc---------c-c--CCCCCCCceE
Confidence 999999999999999763110 00 011111000 0000 0 0 0123578999
Q ss_pred EEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHH
Q psy8155 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFS 456 (617)
Q Consensus 377 ~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~ 456 (617)
+|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..++...++.++..|+++++.+..++..+++
T Consensus 132 ~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~ 211 (471)
T PRK07787 132 LIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQ 211 (471)
T ss_pred EEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHH
Confidence 99999999999999999999999998888888999999999999999999998888999999999999999899999999
Q ss_pred HHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCC
Q psy8155 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKS 534 (617)
Q Consensus 457 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~ 534 (617)
.|+ +++|++..+|+++..|++.... ...++++|.++ |+++++++.++|.+.++. +++|.||+||+...+......
T Consensus 212 ~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~~~~~~~ 288 (471)
T PRK07787 212 ALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTGH-RPVERYGMTETLITLSTRADG 288 (471)
T ss_pred HHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcCC-CeecccCccccCcceecCCCC
Confidence 999 9999999999999999875432 23567888887 778999999999998876 799999999997654421110
Q ss_pred CCHHHHHHHHhhcCCCCCcCcEEEEeec----c--------------cCCccchhhhHHH-----hhcCCCCCccCCeeE
Q psy8155 535 LDVSAVSEGIKKALPSYARPLFIRCLRE----V--------------EMTGTYKLKKLDL-----QKEGFDPNVIQDRLY 591 (617)
Q Consensus 535 ~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l--------------P~t~~GK~dr~~L-----~~~g~~~~~TGD~lg 591 (617)
.. ....+...+|. ..+.+++. + |....|+.++... .++|| ++||| +|
T Consensus 289 ~~---~~~~vG~~~~g----~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~--~~TGD-lg 358 (471)
T PRK07787 289 ER---RPGWVGLPLAG----VETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGW--FRTGD-VA 358 (471)
T ss_pred cc---cCCcccccCCC----cEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCc--eecCc-eE
Confidence 00 00012222221 11222211 0 1122344433332 23566 77999 99
Q ss_pred EEeCCCceeeCCHHH-HHHHhcCCcCC
Q psy8155 592 YLSSKGVYEELTPEV-YKDLVQGNIRL 617 (617)
Q Consensus 592 ~~d~d~G~l~i~GR~-~d~I~~~G~~v 617 (617)
++|+| |+++++||. ||+||++|+||
T Consensus 359 ~~~~d-g~l~~~GR~~d~~i~~~G~~v 384 (471)
T PRK07787 359 VVDPD-GMHRIVGRESTDLIKSGGYRI 384 (471)
T ss_pred EEcCC-CCEEEeCCCCceeEeeCCEEE
Confidence 99998 999999996 89999999885
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=383.60 Aligned_cols=380 Identities=19% Similarity=0.189 Sum_probs=289.2
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+++.+.+++++..+|+++|+.+.++.+||+||.++++++|..|.+.|+++|++|+++++++.+++++++||+++|++++|
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~ 81 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIP 81 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeCCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+++.++.+++..+++.+++++++++.+.... ......+..++ +.+.... .......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--------------~~~~~~~--~~~~~~~ 137 (503)
T PRK04813 82 VDVSSPAERIEMIIEVAKPSLIIATEELPLE--------ILGIPVITLDE--------------LKDIFAT--GNPYDFD 137 (503)
T ss_pred CCCCChHHHHHHHHHhcCCCEEEeccccccc--------ccCCcEEehHH--------------hhhhhhc--ccccccc
Confidence 9999999999999999999999998764210 01112222111 1111100 0111111
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....++++++++|||||||.||||.++|+++.....+....+++..+++++...|++|..+. ..++.+|..|+++++.+
T Consensus 138 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~ 216 (503)
T PRK04813 138 HAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALP 216 (503)
T ss_pred ccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcC
Confidence 23467899999999999999999999999999999888888999999999999999998885 77889999999999987
Q ss_pred C---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 448 K---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 448 ~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+ .++..+++.++++++|++..+|++++.++.........++++|.+. |+++++.+.++|.+.++...+++.||+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~t 296 (503)
T PRK04813 217 KDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPT 296 (503)
T ss_pred hhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccc
Confidence 5 5899999999999999999999999887765544455678888876 8999999999999999766899999999
Q ss_pred ccceEEeCC--CCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh------cC
Q psy8155 523 EGMAAILDI--NKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK------EG 580 (617)
Q Consensus 523 E~~~~v~~~--~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~------~g 580 (617)
|+...+... ........-...+...+|.. .....+.+.. |....|+.+...... +|
T Consensus 297 E~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~g 374 (503)
T PRK04813 297 EATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISG--PSVSKGYLNNPEKTAEAFFTFDG 374 (503)
T ss_pred hheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEec--cccccccCCChhHhHHhhccCCC
Confidence 985544310 00000000000011111110 0011111111 222334444443333 33
Q ss_pred CCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 581 FDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 581 ~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..|++||| +|++ ++ |++++.||.||+||++|+||
T Consensus 375 ~~~~~tGD-~~~~-~~-g~~~~~GR~~d~i~~~G~~v 408 (503)
T PRK04813 375 QPAYHTGD-AGYL-ED-GLLFYQGRIDFQIKLNGYRI 408 (503)
T ss_pred ceeEECCc-eEEe-eC-CeEEEeccccceEEECcEEe
Confidence 12478999 9999 86 99999999999999999986
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=381.18 Aligned_cols=397 Identities=19% Similarity=0.225 Sum_probs=288.8
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
.++.++|+.+++++|+++|+++.++.+||.||.++++++|.+|. +.|+++|++|+++++|+.++++++|||+++|++++
T Consensus 23 ~~l~~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 102 (560)
T PRK08974 23 QSLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVV 102 (560)
T ss_pred ccHHHHHHHHHHhCCCCceEEECCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEe
Confidence 57999999999999999999999999999999999999999998 48999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCC--CC-----------------CCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS--SS-----------------PVP 347 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~-----------------~~~ 347 (617)
|++|.++.+++.++++++++++++++++..+.+..+...... ..++......... .. ..+
T Consensus 103 ~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (560)
T PRK08974 103 NVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPV-KHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLP 181 (560)
T ss_pred ccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCc-ceEEEecccccccccccccccchhhhcccccccccCC
Confidence 999999999999999999999999988766666554433221 1111111000000 00 000
Q ss_pred CcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC---CCCCCEEEEcCcch
Q psy8155 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG---FRTKDRFYTPLPLY 424 (617)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---~~~~d~~l~~~p~~ 424 (617)
....+.+...... ..........++++++|+|||||||.||||.++|+++...+......+. ...++.++..+|++
T Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 260 (560)
T PRK08974 182 DAISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLY 260 (560)
T ss_pred CcccHHHHhhccC-CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHH
Confidence 0011111111111 1111112346789999999999999999999999999887665444332 24466888899999
Q ss_pred hhHHHHHHHHHHhHcCcEEEEcC-CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHH
Q psy8155 425 HTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 425 ~~~~~~~~~~~~L~~G~~lvi~~-~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
|.+++....+.++..|+++++.. ..++..+++.++++++|.+..+|++++.|+.........++++|.++ |+++++.
T Consensus 261 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~ 340 (560)
T PRK08974 261 HIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQA 340 (560)
T ss_pred HHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHH
Confidence 98887677777889999977764 56899999999999999999999999999887655555678899887 7789999
Q ss_pred HHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cC
Q psy8155 502 IWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EM 565 (617)
Q Consensus 502 ~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~ 565 (617)
+.++|.+.++. .+++.||+||+...+.......... ...+...+|. ..+.+++. + |.
T Consensus 341 ~~~~~~~~~g~-~~~~~YG~tE~~~~~~~~~~~~~~~--~~~~G~~~~~----~~~~i~~~~~~~~~~g~~Gel~v~g~~ 413 (560)
T PRK08974 341 VAERWVKLTGQ-YLLEGYGLTECSPLVSVNPYDLDYY--SGSIGLPVPS----TEIKLVDDDGNEVPPGEPGELWVKGPQ 413 (560)
T ss_pred HHHHHHHHhCC-cEEeeecccccCceeeccCCCCccc--CCccccCcCC----CEEEEECCCCCCCCCCCceEEEEecCC
Confidence 99999998876 7999999999865544211110000 0001111111 12222221 1 11
Q ss_pred CccchhhhHHH----hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 566 TGTYKLKKLDL----QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 566 t~~GK~dr~~L----~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...|+..+... .++|| ++||| ++++|++ |+++|+||.||+|+++|+||
T Consensus 414 ~~~gy~~~~~~~~~~~~~g~--~~TGD-l~~~~~~-g~l~i~GR~~d~i~~~G~~i 465 (560)
T PRK08974 414 VMLGYWQRPEATDEVIKDGW--LATGD-IAVMDEE-GFLRIVDRKKDMILVSGFNV 465 (560)
T ss_pred cchhhcCChhhhhhhhhcCC--cccCC-EEEEcCC-ceEEEEecccceEEeCCEEE
Confidence 22233322222 24677 77999 9999997 99999999999999999885
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=378.65 Aligned_cols=373 Identities=19% Similarity=0.259 Sum_probs=269.8
Q ss_pred HHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCC
Q psy8155 215 REHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292 (617)
Q Consensus 215 ~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~ 292 (617)
..+|+++|+++|+++. ++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|+++.+
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~ 83 (501)
T PRK13390 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83 (501)
T ss_pred chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence 3567889999999874 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCC
Q psy8155 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372 (617)
Q Consensus 293 p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (617)
+.+++.++++++++++++++.............. ...+.+..... ....+++...... +. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~---~~---~~~~ 147 (501)
T PRK13390 84 TAPEADYIVGDSGARVLVASAALDGLAAKVGADL---PLRLSFGGEID-------GFGSFEAALAGAG---PR---LTEQ 147 (501)
T ss_pred CHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc---ceEEEecCccc-------ccccHHHHhcccC---CC---CCCC
Confidence 9999999999999999999876544333221111 11122211100 0111222211110 00 1122
Q ss_pred CCeEEEEEccCCCCCCceEEe--chHHHHHH----HHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 373 QDKLIYIYTSGTTGLPKAAVI--SNHRYYFL----GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 373 ~~~a~ii~TSGSTG~PKgV~~--sh~~l~~~----~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.+.++|+|||||||.||||++ +|+++... .......+++..+++++..+|++|..++.+ .+..+..|+++++.
T Consensus 148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~~ 226 (501)
T PRK13390 148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVLA 226 (501)
T ss_pred cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHH-HHHHHhcCceEEEc
Confidence 357999999999999999995 56655442 122344678889999999999999888644 34467889999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+.+++..+++.|+++++|++.++|+++..|+..... ....++++|.++ |+++++++.+.+.+.++. .+++.||+|
T Consensus 227 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~-~~~~~YG~t 305 (501)
T PRK13390 227 KRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP-IVYEYYSST 305 (501)
T ss_pred CCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC-ceeeeeccc
Confidence 989999999999999999999999999998865432 234567888876 788999999999998876 699999999
Q ss_pred ccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHhh-------
Q psy8155 523 EGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQK------- 578 (617)
Q Consensus 523 E~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~~------- 578 (617)
|+..... ........ ...+...+| ..+.++++ + |....|+.++....+
T Consensus 306 E~~~~~~~~~~~~~~~---~~~~G~~~~-----g~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~ 377 (501)
T PRK13390 306 EAHGMTFIDSPDWLAH---PGSVGRSVL-----GDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAH 377 (501)
T ss_pred ccCceEEecchhhccC---CCCcCCccc-----ceEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCC
Confidence 9964332 11110000 001111111 11222211 1 112234444333322
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 378 ~~w--~~tGD-l~~~~~d-g~l~~~gR~~~~i~~~G~~v 412 (501)
T PRK13390 378 PFW--TTVGD-LGSVDED-GYLYLADRKSFMIISGGVNI 412 (501)
T ss_pred Cce--EEcCc-eEEECCC-CeEEEeeccccceeECCeee
Confidence 356 67999 9999997 99999999999999999986
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=378.41 Aligned_cols=382 Identities=21% Similarity=0.288 Sum_probs=282.7
Q ss_pred HHHHHhhCCCceEEEE--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCC
Q psy8155 214 FREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291 (617)
Q Consensus 214 ~~~~a~~~p~~~Al~~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~ 291 (617)
....++++|+++|+++ .++.+||.||.++++++|++|.+.|+++|++|+++++++++++++++||+++|++++|+++.
T Consensus 3 ~~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 3 PGIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 3567889999999987 47789999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCC
Q psy8155 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVG 371 (617)
Q Consensus 292 ~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (617)
++.+++.++++++++++++++....+.+.++....+.....+.++..... .....+.+.....+.. ...+
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~ 152 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL-----EGFVGYAEAVAGLPAT-----PIAD 152 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC-----cccccHHHHhcCCCCC-----CCCC
Confidence 99999999999999999999988777666665555443344444421110 0112222222211110 1123
Q ss_pred CCCeEEEEEccCCCCCCceEEe--chHHHHH---HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 372 VQDKLIYIYTSGTTGLPKAAVI--SNHRYYF---LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 372 ~~~~a~ii~TSGSTG~PKgV~~--sh~~l~~---~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.++.++++|||||||.||||++ +|.++.. ........+++.++++++...|++|..++ ...+.++..|+++++.
T Consensus 153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~ 231 (511)
T PRK13391 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVM 231 (511)
T ss_pred cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEEC
Confidence 4567999999999999999995 4666532 33445567788899999999999999886 4567799999999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+.+++..+++.++++++|++.++|+++..++..... ...+++++|.++ |+++++++.+++.+.++. .+++.||+|
T Consensus 232 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~-~v~~~YG~t 310 (511)
T PRK13391 232 EHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP-IIHEYYAAT 310 (511)
T ss_pred CCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCC-ceeeeeccc
Confidence 999999999999999999999999999988865432 223577898877 888999999999998885 799999999
Q ss_pred ccceEEeCCCCC-CCHHHHHHHHhhcCCC-------CC------cCcEEEEeecccCCccchhhhHH-----Hhh-cCCC
Q psy8155 523 EGMAAILDINKS-LDVSAVSEGIKKALPS-------YA------RPLFIRCLREVEMTGTYKLKKLD-----LQK-EGFD 582 (617)
Q Consensus 523 E~~~~v~~~~~~-~~~~~l~~~l~~~Lp~-------~~------~P~~~~~~~~lP~t~~GK~dr~~-----L~~-~g~~ 582 (617)
|+.......... ... ...+...+|. .. .+..+.+...++ -|+.+... ... .+|
T Consensus 311 E~~~~~~~~~~~~~~~---~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~~~---~gy~~~~~~~~~~~~~~~~w- 383 (511)
T PRK13391 311 EGLGFTACDSEEWLAH---PGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRP---FEYLNDPAKTAEARHPDGTW- 383 (511)
T ss_pred cccceEEecCcccccc---CCCcCCcccceEEEECCCCCCCCCCCceEEEEecCcc---eEEcCChhHhHHhhccCCCE-
Confidence 996543311110 000 0011111111 00 011222222222 12222221 112 377
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|++ |+++++||.||+||++|+||
T Consensus 384 -~~TGD-~g~~~~~-g~l~~~gR~~~~i~~~G~~v 415 (511)
T PRK13391 384 -STVGD-IGYVDED-GYLYLTDRAAFMIISGGVNI 415 (511)
T ss_pred -EecCC-EEEECCC-ccEEEeccCCCEEEeCCEEE
Confidence 77999 9999997 99999999999999999985
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=370.15 Aligned_cols=347 Identities=20% Similarity=0.194 Sum_probs=266.5
Q ss_pred HHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCC
Q psy8155 214 FREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293 (617)
Q Consensus 214 ~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p 293 (617)
....++++|+++|+++.++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+
T Consensus 9 ~~~~a~~~~~~~a~~~~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~~ 88 (458)
T PRK09029 9 WRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLP 88 (458)
T ss_pred HHHHHHhCCCceeeecCCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCCC
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCC
Q psy8155 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373 (617)
Q Consensus 294 ~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (617)
.+++..+++++++++++++++... +..+ ..... . . .... ......++
T Consensus 89 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~--------~~~~~-----------------~---~-~~~~---~~~~~~~~ 135 (458)
T PRK09029 89 QPLLEELLPSLTLDFALVLEGENT-FSAL--------TSLHL-----------------Q---L-VEGA---HAVAWQPQ 135 (458)
T ss_pred HHHHHHHHHhcCCCEEEEcCcccc-hhhc--------ccccc-----------------c---c-cccc---CcccCCCC
Confidence 999999999999999999876532 1100 00000 0 0 0000 11234678
Q ss_pred CeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHH
Q psy8155 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453 (617)
Q Consensus 374 ~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~ 453 (617)
++++++|||||||.||||+++|+++...+......+++.++|+++...|++|..++ ..++.+|..|+++++.+. ..
T Consensus 136 ~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~ 211 (458)
T PRK09029 136 RLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QP 211 (458)
T ss_pred CeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HH
Confidence 99999999999999999999999999999888888999999999999999999886 456678999999999874 45
Q ss_pred HHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCC
Q psy8155 454 YFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDI 531 (617)
Q Consensus 454 l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~ 531 (617)
+++.+ .++|.+..+|+++..++..... ..++|.++ |+++++.+.+++.+ ++. ++++.||+||+.......
T Consensus 212 ~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~-~g~-~~~~~YG~tE~~~~~~~~ 283 (458)
T PRK09029 212 LEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQ-QGI-RCWCGYGLTEMASTVCAK 283 (458)
T ss_pred HHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHH-cCC-cEeccccccccCcceecc
Confidence 66766 4899999999999998876443 34788776 78899999998875 465 799999999986544421
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcC---cEEEEeecccCCccchhhhHH----HhhcCCCCCccCCeeEEEeCCCceeeCCH
Q psy8155 532 NKSLDVSAVSEGIKKALPSYARP---LFIRCLREVEMTGTYKLKKLD----LQKEGFDPNVIQDRLYYLSSKGVYEELTP 604 (617)
Q Consensus 532 ~~~~~~~~l~~~l~~~Lp~~~~P---~~~~~~~~lP~t~~GK~dr~~----L~~~g~~~~~TGD~lg~~d~d~G~l~i~G 604 (617)
.... . ..++..+|...+. ..+.+.. |....|+.+... ...+|| ++||| +|++| | |+++|+|
T Consensus 284 ~~~~-~----~~~G~~~~~~~~~i~~gel~v~g--~~~~~gY~~~~~~~~~~~~~~~--~~TGD-~~~~~-~-g~l~~~g 351 (458)
T PRK09029 284 RADG-L----AGVGSPLPGREVKLVDGEIWLRG--ASLALGYWRQGQLVPLVNDEGW--FATRD-RGEWQ-N-GELTILG 351 (458)
T ss_pred CCCC-C----CCCCCCCCCCEEEEeCCEEEEec--CceeeeeecCccccccccCCCc--cCCCC-cEEEe-C-CEEEEec
Confidence 1110 0 0123333332110 1111111 222233332221 124567 77999 99999 7 9999999
Q ss_pred HHHHHHhcCCcCC
Q psy8155 605 EVYKDLVQGNIRL 617 (617)
Q Consensus 605 R~~d~I~~~G~~v 617 (617)
|+||+||++|+||
T Consensus 352 R~~d~i~~~G~~v 364 (458)
T PRK09029 352 RLDNLFFSGGEGI 364 (458)
T ss_pred ccccceeeCCEEe
Confidence 9999999999986
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=373.21 Aligned_cols=328 Identities=15% Similarity=0.142 Sum_probs=247.1
Q ss_pred eecHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGL-KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY 311 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv-~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~ 311 (617)
-+.|+||+++++++|++|++.|+ ++|++|+++++|+++++++++||+++|++++|+||.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 36899999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceE
Q psy8155 312 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAA 391 (617)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV 391 (617)
+.+..... .+. .... .....++++++++|||||||.||||
T Consensus 99 ~~~~~~~~---------------~~~---------------------~~~~----~~~~~~~~~~~i~~TSGTTG~PKgV 138 (452)
T PRK07445 99 LDQLKLSH---------------PPP---------------------LPSQ----GILPNLETGWIMIPTGGSSGQIRFA 138 (452)
T ss_pred cCcccccc---------------CCC---------------------CCcc----ccCCCCCCcEEEEeCCCCCCCCcEE
Confidence 76532100 000 0000 0123568999999999999999999
Q ss_pred EechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHH
Q psy8155 392 VISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGE 471 (617)
Q Consensus 392 ~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~ 471 (617)
++||+++.+.+.+....+++.+ ++++..+|++|..++ ..++.+|..|+++++.+..+.........++++|++.++|+
T Consensus 139 ~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~ 216 (452)
T PRK07445 139 IHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPT 216 (452)
T ss_pred EechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHH
Confidence 9999999988888887777765 467889999999886 66888999999999987433333334456788999999999
Q ss_pred HHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC--CCCCCCHHHHHHHHhhc
Q psy8155 472 MCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD--INKSLDVSAVSEGIKKA 547 (617)
Q Consensus 472 ~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~--~~~~~~~~~l~~~l~~~ 547 (617)
+++.+++.. ...++++|.++ |+++++++.+++.+ ++. +++|.||+||+...+.. +..... -...+...
T Consensus 217 ~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~-~l~~~YG~TE~~~~~~~~~~~~~~~---~~~~~G~~ 288 (452)
T PRK07445 217 QLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQ-LQL-RLAPTYGMTETASQIATLKPDDFLA---GNNSSGQV 288 (452)
T ss_pred HHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHh-cCC-eEecCcchhhhcccccccCchhhcc---CCCcCCcc
Confidence 999998632 23467898877 78899999998875 454 79999999998654431 111000 00112233
Q ss_pred CCCCCc------CcEEEEeecccCCccchhhhHHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 548 LPSYAR------PLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 548 Lp~~~~------P~~~~~~~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|...+ ...+.+.. |....|+... ....+|| ++||| +|++|+| |+++|+||.||+||++|+||
T Consensus 289 ~p~~~v~i~~g~~Gel~v~g--~~~~~gY~~~-~~~~~g~--~~TGD-l~~~d~d-G~l~~~GR~dd~I~~~G~~V 357 (452)
T PRK07445 289 LPHAQITIPANQTGNITIQA--QSLALGYYPQ-ILDSQGI--FETDD-LGYLDAQ-GYLHILGRNSQKIITGGENV 357 (452)
T ss_pred CCCCeEEEcCCCcceEEEeC--CccchhhcCC-ccCCCCE--EECCC-EEEEcCC-CCEEEEeecCCEEEECCEEE
Confidence 333221 11111111 3333444432 1234677 77999 9999997 99999999999999999986
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=382.20 Aligned_cols=383 Identities=19% Similarity=0.161 Sum_probs=278.8
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECC---ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFEN---TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~---~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
...++.++++..++++|+.+++...+ +.+||.||+++++++|++|++.|+++|++|+++++|+++++++++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G 98 (579)
T PRK09192 19 DFPTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAG 98 (579)
T ss_pred chhhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Confidence 34689999999999988766553332 679999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCC-------hHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 283 VITALINHNLR-------QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 283 ~~~vpldp~~p-------~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
++++|+|+..+ .+++.++++.++++++|++....+.+........ ...+.. +.++
T Consensus 99 ~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~-~~~~~~-----------------~~~~ 160 (579)
T PRK09192 99 LVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP-LLHVLS-----------------HAWF 160 (579)
T ss_pred CeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc-ccceee-----------------hhhh
Confidence 99999987543 6899999999999999999887666554422111 111111 1111
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH-HhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY-QIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
....... ...+...+++++||+|||||||.||||+++|+++...+..... .+++.++|+++.++|++|+.+++..++
T Consensus 161 ~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 238 (579)
T PRK09192 161 KALPEAD--VALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLL 238 (579)
T ss_pred cccCCCc--cccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHH
Confidence 1111111 1112346789999999999999999999999999998887777 789999999999999999999877777
Q ss_pred HHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC---CCCCccCceeeee--ccCCCHHHHHH
Q psy8155 435 QALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE---KPEDKAHNVRLMF--GNGLRPQIWSE 505 (617)
Q Consensus 435 ~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~--Ge~l~~~~~~~ 505 (617)
.++..|+++++.+. .++..+++.+.++++|++..+|.++..+..... ....+++++|.++ |+++++++.++
T Consensus 239 ~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 318 (579)
T PRK09192 239 TPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQ 318 (579)
T ss_pred HHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHH
Confidence 88999999987762 378899999999999987776665555443221 1224578898887 88899999999
Q ss_pred HHHHcCc-----ccccccccccccceEEeCCCCC--C-----CHHHHH------------------HHHhhcCCCCCcCc
Q psy8155 506 FVDRFRI-----AQIGEFYGATEGMAAILDINKS--L-----DVSAVS------------------EGIKKALPSYARPL 555 (617)
Q Consensus 506 ~~~~~~~-----~~l~n~YG~TE~~~~v~~~~~~--~-----~~~~l~------------------~~l~~~Lp~~~~P~ 555 (617)
|.+.++. ..+++.||+||+...+...... . +...+. ..++..+|..
T Consensus 319 ~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~---- 394 (579)
T PRK09192 319 FAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGH---- 394 (579)
T ss_pred HHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCc----
Confidence 9988742 2599999999996554421110 0 000000 0011111111
Q ss_pred EEEEeec----cc------------CCccchhhhH----HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCc
Q psy8155 556 FIRCLRE----VE------------MTGTYKLKKL----DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNI 615 (617)
Q Consensus 556 ~~~~~~~----lP------------~t~~GK~dr~----~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~ 615 (617)
.+.++++ +| ....|+.+.. ...++|| ++||| +|++ ++ |+++++||+||+||++|+
T Consensus 395 ~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw--~~TGD-lg~~-~~-G~l~~~GR~dd~i~~~G~ 469 (579)
T PRK09192 395 EIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGW--LDTGD-LGYL-LD-GYLYITGRAKDLIIINGR 469 (579)
T ss_pred EEEEECCCCCCCCCCCEEEEEecCCchhhhhcCCccccccccCCce--eeccc-eeeE-EC-CEEEEEeccccEEEECCC
Confidence 2333221 11 1112333221 1234567 77999 9999 76 999999999999999999
Q ss_pred CC
Q psy8155 616 RL 617 (617)
Q Consensus 616 ~v 617 (617)
||
T Consensus 470 ~v 471 (579)
T PRK09192 470 NI 471 (579)
T ss_pred cc
Confidence 87
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=369.24 Aligned_cols=375 Identities=19% Similarity=0.214 Sum_probs=271.2
Q ss_pred eEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhc
Q psy8155 225 VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304 (617)
Q Consensus 225 ~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~ 304 (617)
.|++.+++.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|++++|++++|++|.++.+++..+++++
T Consensus 3 ~~~~~~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 3 ATIISGDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred eEEEECCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCC---------CCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCe
Q psy8155 305 GVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDS---------SSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375 (617)
Q Consensus 305 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (617)
++++++++....+.+.+.. +....++..+..... ..........+++.....+ ......++++
T Consensus 83 ~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 154 (509)
T PRK12406 83 GARVLIAHADLLHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQP 154 (509)
T ss_pred CCcEEEEccchhhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCc
Confidence 9999999887666544322 122223222211000 0000111222333322111 1113356899
Q ss_pred EEEEEccCCCCCCceEEechHHHHH---HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHH
Q psy8155 376 LIYIYTSGTTGLPKAAVISNHRYYF---LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452 (617)
Q Consensus 376 a~ii~TSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~ 452 (617)
++++|||||||.||||+++|.+..+ ........+++.++++++...|++|..+..+ .+.++..|+++++.+..++.
T Consensus 155 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 233 (509)
T PRK12406 155 QSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQPRFDPE 233 (509)
T ss_pred eEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHH-HHHHHhhheEEEEccCCCHH
Confidence 9999999999999999997765443 3344556788899999999999999887644 44578899999999889999
Q ss_pred HHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEE
Q psy8155 453 NYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528 (617)
Q Consensus 453 ~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v 528 (617)
.+++.++++++|++..+|+++..|+..... ...+++++|.++ |+++++++.+++.+.++. .+++.||+||+....
T Consensus 234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~-~~~~~YG~tE~~~~~ 312 (509)
T PRK12406 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGP-VIYEYYGSTESGAVT 312 (509)
T ss_pred HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCC-cEEeeccccccCceE
Confidence 999999999999999999999999876432 234578899887 788999999999998886 699999999997644
Q ss_pred eCCCCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEee-cccCCccchhh----hHHHhhcCCCCCccCCe
Q psy8155 529 LDINKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLR-EVEMTGTYKLK----KLDLQKEGFDPNVIQDR 589 (617)
Q Consensus 529 ~~~~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~-~lP~t~~GK~d----r~~L~~~g~~~~~TGD~ 589 (617)
.......... ...++..+|.. ..+..+.+.. .++. .|+.+ +.....+|| ++|||
T Consensus 313 ~~~~~~~~~~--~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~--~~y~~~~~~~~~~~~~~~--~~TGD- 385 (509)
T PRK12406 313 FATSEDALSH--PGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPD--FTYHNKPEKRAEIDRGGF--ITSGD- 385 (509)
T ss_pred ecCccccccc--CCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCcccc--ccccCCchhcccccCCCC--eEEcc-
Confidence 4211100000 00011111110 0011111111 1111 12221 122335677 77999
Q ss_pred eEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 590 LYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 590 lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++++|+| |+++++||.||+||++|+||
T Consensus 386 ~~~~~~~-g~~~~~GR~~d~ik~~G~~v 412 (509)
T PRK12406 386 VGYLDAD-GYLFLCDRKRDMVISGGVNI 412 (509)
T ss_pred EEEEcCC-ceEEEeecccceEEECCEEE
Confidence 9999997 99999999999999999986
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=369.16 Aligned_cols=369 Identities=24% Similarity=0.310 Sum_probs=270.6
Q ss_pred ceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHh
Q psy8155 224 KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINI 303 (617)
Q Consensus 224 ~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~ 303 (617)
++++.+.++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|+++.++.+++..++++
T Consensus 2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~ 81 (502)
T PRK08276 2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD 81 (502)
T ss_pred ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence 35677779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccC
Q psy8155 304 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383 (617)
Q Consensus 304 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 383 (617)
++++++++++...+.+.+.....+.....+.+.+... .....+.+....... ......++.++++||||
T Consensus 82 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSG 150 (502)
T PRK08276 82 SGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPV------PGFRSYEEALAAQPD-----TPIADETAGADMLYSSG 150 (502)
T ss_pred CCCCEEEEccchhhHHHHHhhhccccccEEEEeCCCC------CccccHHHHHhcCCC-----CCCCCCCcceEEEECCC
Confidence 9999999998877766655444432233332321110 012223333222111 11224567899999999
Q ss_pred CCCCCceEEechHHHHHHH------HHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHH
Q psy8155 384 TTGLPKAAVISNHRYYFLG------GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 457 (617)
Q Consensus 384 STG~PKgV~~sh~~l~~~~------~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~ 457 (617)
|||.||||+++|+++.... ......+....++++++..|++|..++.+ .+.++..|+++++.+.+++..+++.
T Consensus 151 tTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (502)
T PRK08276 151 TTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALAL 229 (502)
T ss_pred CCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHH
Confidence 9999999999987654322 22222233357789999999999888644 4579999999999999999999999
Q ss_pred HHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe-CCC
Q psy8155 458 VCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL-DIN 532 (617)
Q Consensus 458 i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~-~~~ 532 (617)
++++++|++.++|+++..+++.+.. ...+++++|.++ |++++.++.+++.+.++. .+++.||+||+...+. ...
T Consensus 230 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~-~~~~~yG~tE~~~~~~~~~~ 308 (502)
T PRK08276 230 IERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-IIHEYYASSEGGGVTVITSE 308 (502)
T ss_pred HHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCc-HhhhhcccccccceeEecCc
Confidence 9999999999999999999877543 234578999887 888999999999998875 6999999999965333 111
Q ss_pred CCCCHHHHHHHHhhcCCCCCcCcEEEEeec----cc------------CCccchhhhHH-----HhhcCCCCCccCCeeE
Q psy8155 533 KSLDVSAVSEGIKKALPSYARPLFIRCLRE----VE------------MTGTYKLKKLD-----LQKEGFDPNVIQDRLY 591 (617)
Q Consensus 533 ~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----lP------------~t~~GK~dr~~-----L~~~g~~~~~TGD~lg 591 (617)
...... ..++..+ +..+.+++. +| ....|+.+... ..++|| ++||| +|
T Consensus 309 ~~~~~~---~~~G~~~-----~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~--~~TGD-~~ 377 (502)
T PRK08276 309 DWLAHP---GSVGKAV-----LGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGW--VTVGD-VG 377 (502)
T ss_pred cccccC---CCcceec-----ccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCc--eeecc-eE
Confidence 100000 0001111 111222111 11 11123332222 223377 77999 99
Q ss_pred EEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 592 YLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 592 ~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++|++ |+++++||.||+||++|+||
T Consensus 378 ~~~~~-g~~~~~GR~~~~i~~~G~~v 402 (502)
T PRK08276 378 YLDED-GYLYLTDRKSDMIISGGVNI 402 (502)
T ss_pred EEcCC-cCEEEeccCcceEEeCCEEe
Confidence 99997 99999999999999999986
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=342.47 Aligned_cols=407 Identities=15% Similarity=0.118 Sum_probs=297.3
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEEC-----------------------CceecHHHHHHHHHHHHHHHHHCCCCCCC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFE-----------------------NTEWTAQQVEAYSNRVANFFLAQGLKKGD 259 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~-----------------------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~ 259 (617)
+.+...|+.++|++.++++.++.++-.. ...+||.|+.+++.++|+.|.+.|+++++
T Consensus 36 ~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e 115 (678)
T KOG1180|consen 36 PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKE 115 (678)
T ss_pred CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3445578888888888888888887432 24589999999999999999999999877
Q ss_pred E-EEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCC
Q psy8155 260 S-VALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD 338 (617)
Q Consensus 260 ~-V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 338 (617)
. |+|+++.+.+|+++.+||++.+...|.+...+..+.+.+-|.+++++.|+|+.++.+.+....+..+....+|..+..
T Consensus 116 ~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~i 195 (678)
T KOG1180|consen 116 TKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIYFDPI 195 (678)
T ss_pred CeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEEecCC
Confidence 7 999999999999999999999999999999999999999999999999999999999888888888888888888852
Q ss_pred CCC----CCC----CCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh-
Q psy8155 339 TDS----SSS----PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI- 409 (617)
Q Consensus 339 ~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~- 409 (617)
+.. ... +.....+++++..-+.....+. .++.|+|+|+|||||||||.|||||++|+|+++.+.......
T Consensus 196 d~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~-~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~ 274 (678)
T KOG1180|consen 196 DYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPP-HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVP 274 (678)
T ss_pred CCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCC-CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCc
Confidence 211 111 1123566777766554443222 233789999999999999999999999999999998877766
Q ss_pred CCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCC---HH-----HHHHHHHHcCCcEEeecHHHHHHHHcC--
Q psy8155 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS---AS-----NYFSDVCKYKCTVGQYIGEMCRYLLST-- 479 (617)
Q Consensus 410 ~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d---~~-----~l~~~i~~~~vt~~~~~P~~~~~l~~~-- 479 (617)
.+++.|+++.++|+.|...+.+|+ .++..|+++-..+..+ .. .---.+...++|++..||.+|.++.+.
T Consensus 275 ~lg~~D~yi~yLPLAHIlEl~aE~-~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl 353 (678)
T KOG1180|consen 275 ELGPKDRYIAYLPLAHILELTAEL-VCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL 353 (678)
T ss_pred ccCCCceEEEechHHHHHHHHHHH-HHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence 689999999999999999998887 5999999998876421 11 112246778999999999999765431
Q ss_pred -------------------------C-CCC--------------CCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 480 -------------------------P-EKP--------------EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 480 -------------------------~-~~~--------------~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
. ... ...-..||.++ |++++++..+.+.-++.+ .+.+
T Consensus 354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~-Pv~q 432 (678)
T KOG1180|consen 354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCC-PVLQ 432 (678)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccc-cccc
Confidence 0 000 00123688887 677999998888777766 5999
Q ss_pred cccccccceEEe-CCCCCCCHH-----------HHHHHHhh-cCCCCCcCcE-EEEeecccCCccchhhhH-----HHhh
Q psy8155 518 FYGATEGMAAIL-DINKSLDVS-----------AVSEGIKK-ALPSYARPLF-IRCLREVEMTGTYKLKKL-----DLQK 578 (617)
Q Consensus 518 ~YG~TE~~~~v~-~~~~~~~~~-----------~l~~~l~~-~Lp~~~~P~~-~~~~~~lP~t~~GK~dr~-----~L~~ 578 (617)
+||.||+++.-. ......+.. .|.++-.. -.+.-.-|.- +.+-++- . ..|+..+. .+..
T Consensus 433 GYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~-v-t~gY~kn~ekT~e~ft~ 510 (678)
T KOG1180|consen 433 GYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPN-V-TMGYYKNEEKTKEDFTV 510 (678)
T ss_pred cccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCc-c-ChhhhCChhhhhhhcee
Confidence 999999965433 111111100 11111100 0111111221 2222221 1 13333222 2333
Q ss_pred -cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhc-CCcC
Q psy8155 579 -EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQ-GNIR 616 (617)
Q Consensus 579 -~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~-~G~~ 616 (617)
+|-.||+||| +|++.+| |.|.|.+|+||++|. +||=
T Consensus 511 ~~G~~WF~TGD-IGe~~pd-G~LkIIDRKKdLVKlq~GEY 548 (678)
T KOG1180|consen 511 EDGQRWFRTGD-IGEFHPD-GCLKIIDRKKDLVKLQNGEY 548 (678)
T ss_pred cCCcEEEeccc-cceecCC-CcEEEeechhhhhhhcccce
Confidence 7733488999 9999998 999999999999995 7763
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=365.72 Aligned_cols=380 Identities=20% Similarity=0.255 Sum_probs=277.2
Q ss_pred CHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 209 TIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
++.+.+...+..+|+.+|+.+. ++.+||.||+++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~ 82 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT 82 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence 5778888999999999999665 56899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHH-------HHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 287 LINHNLRQNSL-------LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 287 pldp~~p~~~l-------~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
|+++..+.+++ ..+++.++++.+++++.....+..... ....++. ++++....
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~-----------------~~~l~~~~ 142 (545)
T PRK07768 83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE---KGIRVLT-----------------VADLLAAD 142 (545)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc---cCCceee-----------------hhhhcccC
Confidence 99999887655 445777899999998766544332211 1112222 22222211
Q ss_pred CCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCC-CEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK-DRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
+. ......++++++|+|||||||+||||+++|+++.+.+......+++.++ |++++.+|++|+.+++..++.++.
T Consensus 143 ~~----~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 218 (545)
T PRK07768 143 PI----DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMY 218 (545)
T ss_pred CC----CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHH
Confidence 11 1123467899999999999999999999999999988888888888876 899999999999997666778899
Q ss_pred cCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCC----CCCCCccCceeeee--ccCCCHHHHHHHHH
Q psy8155 439 FGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP----EKPEDKAHNVRLMF--GNGLRPQIWSEFVD 508 (617)
Q Consensus 439 ~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~----~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~ 508 (617)
.|+++++.+. .++..+.+.++++++|++..+|.++..+.... .....+++++|.++ |++++++..++|.+
T Consensus 219 ~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~ 298 (545)
T PRK07768 219 FGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLD 298 (545)
T ss_pred CCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHH
Confidence 9999998764 37888999999999999988887776665422 12235678899887 88899999999987
Q ss_pred H---cCc--ccccccccccccceEEe--CCCCC-----CCHHHHHHHHhhcCC-------------CCCcCcEEEEeec-
Q psy8155 509 R---FRI--AQIGEFYGATEGMAAIL--DINKS-----LDVSAVSEGIKKALP-------------SYARPLFIRCLRE- 562 (617)
Q Consensus 509 ~---~~~--~~l~n~YG~TE~~~~v~--~~~~~-----~~~~~l~~~l~~~Lp-------------~~~~P~~~~~~~~- 562 (617)
. ++. ..+++.||+||+...+. ..+.. .+...+.. ....++ ..+....+.++++
T Consensus 299 ~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~ 377 (545)
T PRK07768 299 AGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAA-LRRAVPATKGNTRRLATLGPPLPGLEVRVVDED 377 (545)
T ss_pred HHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhc-cCceeccCCCCcceEEeccCCCCCCEEEEECCC
Confidence 4 443 25999999999966543 11111 11111111 001111 0000112333321
Q ss_pred ---ccCC------------ccchhhhH----HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 563 ---VEMT------------GTYKLKKL----DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 563 ---lP~t------------~~GK~dr~----~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++.+ ..|+.... ....+|| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 378 ~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~--~~TGD-l~~~~~~-g~l~~~GR~~d~i~~~G~~v 447 (545)
T PRK07768 378 GQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGW--LDTGD-LGYLTEE-GEVVVCGRVKDVIIMAGRNI 447 (545)
T ss_pred CCCCCCCCEEEEEEccCcccccccCCCCCcccccCCCe--eeccc-eEEEecC-CEEEEEccccceEEECCEec
Confidence 1111 11222111 1123566 77999 9999997 99999999999999999986
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=367.53 Aligned_cols=345 Identities=12% Similarity=0.056 Sum_probs=233.1
Q ss_pred cCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccch------HHHHHHHHHhcCCCeEEEEeCCC
Q psy8155 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL------TDAVQEISTSLGSNVKLFSWSPD 338 (617)
Q Consensus 265 ~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~------~~~~~~~~~~~~~~~~~i~~~~~ 338 (617)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+..+..... ...+.+...
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP--AKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc--ceEEEEecc
Confidence 589999999999999999999999999999999999999999999998642 122222222211 122222211
Q ss_pred CCCCC-CCCCCcCCcchhhccCCC-----CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCC
Q psy8155 339 TDSSS-SPVPRSQALSPLLSEVPT-----SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 412 (617)
Q Consensus 339 ~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 412 (617)
..... ........+.+++..... ..........++++++|+|||||||.||||+++|+++..........++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~ 158 (499)
T PLN03051 79 GEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQ 158 (499)
T ss_pred CcccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCC
Confidence 10000 000012234444321110 001111123568999999999999999999999999887766666677899
Q ss_pred CCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCc
Q psy8155 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHN 489 (617)
Q Consensus 413 ~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~ 489 (617)
++|++++.+|++|+.++ ..++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++
T Consensus 159 ~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~ 237 (499)
T PLN03051 159 PGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK 237 (499)
T ss_pred CCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh
Confidence 99999999999999885 678899999999999874 789999999999999999999999999987653 33456789
Q ss_pred eeeee--ccCCCHHHHHHHHHHcC-cccccccccccccceEEe-CCCCCCCHHHHHHHHhhc---------------CCC
Q psy8155 490 VRLMF--GNGLRPQIWSEFVDRFR-IAQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKA---------------LPS 550 (617)
Q Consensus 490 lr~v~--Ge~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~---------------Lp~ 550 (617)
||.++ |+++++++.+++.+.++ ...++|.||+||+...+. ........ ...+... +|.
T Consensus 238 Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~---~~~~G~p~~~~~~~ivd~~g~~~~~ 314 (499)
T PLN03051 238 LRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQA---PGAFSTASLGTRFVLLNDNGVPYPD 314 (499)
T ss_pred heEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCC---CccccCCCCCceEEEECCCCCCCCC
Confidence 99886 78899999987766333 136999999999854333 11100000 0011111 111
Q ss_pred CC-cCcEEEEeecccCCccchhhhH--HHhhcCC--C------CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 551 YA-RPLFIRCLREVEMTGTYKLKKL--DLQKEGF--D------PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 551 ~~-~P~~~~~~~~lP~t~~GK~dr~--~L~~~g~--~------~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
-. .+..+.+.........|+.+.. +...+|| . |++||| +|++|+| |+|+|+||.|||||++|+||
T Consensus 315 g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGD-lg~~d~d-G~l~~~gR~~d~ik~~G~~v 390 (499)
T PLN03051 315 DQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGD-IMKRTPG-GYFCVQGRADDTMNLGGIKT 390 (499)
T ss_pred CCCcceEEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCC-eEEECCC-CcEEEEeccCCEEeeCCEEC
Confidence 10 1122222222111112332211 0001232 1 478999 9999998 99999999999999999997
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=355.38 Aligned_cols=354 Identities=21% Similarity=0.212 Sum_probs=266.7
Q ss_pred cHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEcc
Q psy8155 235 TAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313 (617)
Q Consensus 235 Ty~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~ 313 (617)
||.||.+.++++|++|.+ .|+++||+|+++++|+.+++++++||+++|++++|+++.++.+++.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEe
Q psy8155 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393 (617)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~ 393 (617)
.....+.... ......+... .......... ........++++++++|||||||.||+|.+
T Consensus 81 ~~~~~~~~~~------~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~ 140 (408)
T TIGR01733 81 ALASRLAGLV------LPIILVDPLE-------------LAALDDAPAP-PPPDAPSGPDDLAYVIYTSGSTGRPKGVVV 140 (408)
T ss_pred chhhhccccC------CceEEechhh-------------hhhccccccc-ccccCCCCCCCcEEEEEcCCCCCCCCEEEe
Confidence 7665443221 1122221100 0000000000 001111357899999999999999999999
Q ss_pred chHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCC---CHHHHHHHHHHcCCcEEeecH
Q psy8155 394 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF---SASNYFSDVCKYKCTVGQYIG 470 (617)
Q Consensus 394 sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~---d~~~l~~~i~~~~vt~~~~~P 470 (617)
+|+++.+...+....+++.++|+++...|++|..++ ..++.++..|+++++.+.. ++..+.+.++++++|.+..+|
T Consensus 141 s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p 219 (408)
T TIGR01733 141 THRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP 219 (408)
T ss_pred ccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence 999999999999999999999999999999999885 7788999999999998764 368899999999999999999
Q ss_pred HHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe---CCCCCCCHHHHHHHHh
Q psy8155 471 EMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL---DINKSLDVSAVSEGIK 545 (617)
Q Consensus 471 ~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~---~~~~~~~~~~l~~~l~ 545 (617)
++++.|++... ..++++|.++ |+++++++.++|.+.++...+++.||+||+...+. ........ .-...++
T Consensus 220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~-~~~~~~G 295 (408)
T TIGR01733 220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPR-ESPVPIG 295 (408)
T ss_pred HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCC-ccccccC
Confidence 99999998754 4578899887 88899999999999998558999999999965553 11111000 0001111
Q ss_pred hcCCCCC--------------cCcEEEEeecccCCccchhhhHHHhhcCC-----------CCCccCCeeEEEeCCCcee
Q psy8155 546 KALPSYA--------------RPLFIRCLREVEMTGTYKLKKLDLQKEGF-----------DPNVIQDRLYYLSSKGVYE 600 (617)
Q Consensus 546 ~~Lp~~~--------------~P~~~~~~~~lP~t~~GK~dr~~L~~~g~-----------~~~~TGD~lg~~d~d~G~l 600 (617)
..+|... .+..+.+.. |....|+.+...+.++.| .|++||| +|++|++ |++
T Consensus 296 ~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGD-l~~~d~~-g~~ 371 (408)
T TIGR01733 296 RPLANTRLYVLDDDLRPVPVGVVGELYIGG--PGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGD-LVRYLPD-GNL 371 (408)
T ss_pred cccCCceEEEECCCCCCCCCCCceEEEecC--ccccccccCChhhhhcceeeCCCCCCCCceEEECCc-eEEEcCC-CCE
Confidence 1122210 011122111 222234443333332221 0488999 9999997 999
Q ss_pred eCCHHHHHHHhcCCcCC
Q psy8155 601 ELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 601 ~i~GR~~d~I~~~G~~v 617 (617)
+++||.||+|+++|+||
T Consensus 372 ~~~gR~~~~i~~~G~~v 388 (408)
T TIGR01733 372 EFLGRIDDQVKIRGYRI 388 (408)
T ss_pred EEeeccCCEEEeCeEEe
Confidence 99999999999999986
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=358.08 Aligned_cols=338 Identities=21% Similarity=0.227 Sum_probs=256.6
Q ss_pred cHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 235 Ty~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEec
Q psy8155 315 LTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394 (617)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~s 394 (617)
..... ..... +..+..... ...........+++++++|||||||.||||+++
T Consensus 81 ~~~~~----------~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s 132 (436)
T TIGR01923 81 LEEKD----------FQADS-----------------LDRIEAAGR-YETSLSASFNMDQIATLMFTSGTTGKPKAVPHT 132 (436)
T ss_pred ccccc----------eeecc-----------------hHhhhhccc-ccccccccCCcCceEEEEeCCCCCCCCcEEEEe
Confidence 43110 00000 001100000 001111234568999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHH
Q psy8155 395 NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCR 474 (617)
Q Consensus 395 h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~ 474 (617)
|+++...+.+....++++++|+++..+|++|..++ ..++.++..|+++++.+.++ .+++.|+++++|++.++|+++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~ 209 (436)
T TIGR01923 133 FRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLN 209 (436)
T ss_pred hHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHH
Confidence 99999999998899999999999999999998885 67889999999999987653 8999999999999999999999
Q ss_pred HHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCC
Q psy8155 475 YLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA 552 (617)
Q Consensus 475 ~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~ 552 (617)
.+++..... +++|.+. |+++++++.+.+.+ .+. .++|.||+||+...+............ .+...+|...
T Consensus 210 ~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~YG~tE~~~~~~~~~~~~~~~~~--~~G~~~~~~~ 281 (436)
T TIGR01923 210 RLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQ-YGL-PIYLSYGMTETCSQVTTATPEMLHARP--DVGRPLAGRE 281 (436)
T ss_pred HHHhCcCCC----CceEEEEECCCCCCHHHHHHHHH-hCC-ceeeEecCCccchhccCcCcccccccc--CCCccCCCcE
Confidence 998765422 6788776 89999999988865 465 799999999996554421111000000 0222222211
Q ss_pred ---------cCcEEEEeecccCCccchhhhH----HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 553 ---------RPLFIRCLREVEMTGTYKLKKL----DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 553 ---------~P~~~~~~~~lP~t~~GK~dr~----~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+..+.+-. |....|+.++. ....+|| ++||| +|++|+| |++++.||.+|+||++|+||
T Consensus 282 ~~i~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~--~~TGD-~~~~~~d-g~~~~~GR~~d~i~~~G~~v 353 (436)
T TIGR01923 282 IKIKVDNKEGHGEIMVKG--ANLMKGYLYQGELTPAFEQQGW--FNTGD-IGELDGE-GFLYVLGRRDDLIISGGENI 353 (436)
T ss_pred EEEEeCCCCCceEEEEEC--CccchhhCCChhhhhhhhcCCC--eeccc-eEEEcCC-CCEEEeccccCeEEeCCEee
Confidence 011111111 22223333322 2234577 77999 9999998 99999999999999999886
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=334.16 Aligned_cols=383 Identities=21% Similarity=0.226 Sum_probs=286.3
Q ss_pred CCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCCh
Q psy8155 221 SPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294 (617)
Q Consensus 221 ~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~ 294 (617)
.++.+|+++. ...+||.|+.+++.++|..|.+.|+++||+|++.+|+.+++++++|||.++|++..++-..+++
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~ 157 (626)
T KOG1175|consen 78 GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSA 157 (626)
T ss_pred CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCH
Confidence 5889999885 2448999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEccchHH---------HHHHHHHhcCC----CeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 295 NSLLHCINIAGVSAFIYGAELTD---------AVQEISTSLGS----NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 295 ~~l~~il~~~~~~~vl~~~~~~~---------~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
+.+...++++++++|++.+.... ...+....++. ....+.+..... ...++..+.....
T Consensus 158 ~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------d~~~~~~~~~a~~ 229 (626)
T KOG1175|consen 158 KELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNR--------DLFWSLELKKASP 229 (626)
T ss_pred HHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccc--------cccHHHHhhhcCC
Confidence 99999999999999999875432 22222222221 111111111110 2234444343333
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHH-HHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
..+ +...+.+|+.+|+|||||||.||||.+++.+. ...+......++++++|++.+.+-+.++.+..+..+++|++|
T Consensus 230 ~~~--~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~G 307 (626)
T KOG1175|consen 230 EHP--CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNG 307 (626)
T ss_pred CCC--ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcC
Confidence 332 34567889999999999999999999998754 445556677789999999999999999988777788899999
Q ss_pred cEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC--CCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 441 CCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP--EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 441 ~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
+|+++.+ ++++..+++.+.+++||++...|++++.|....... ..+.++||.++ ||++.++.++.|.+.++...
T Consensus 308 a~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~p 387 (626)
T KOG1175|consen 308 ATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDP 387 (626)
T ss_pred cEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccc
Confidence 9999987 359999999999999999999999999777665543 33346799998 99999999999999998634
Q ss_pred ccccccccccceEEeC--CCC-CCCHHH-----------HHHHHhhcCCCCCcCcEEEEeeccc----CCccchhhh--H
Q psy8155 515 IGEFYGATEGMAAILD--INK-SLDVSA-----------VSEGIKKALPSYARPLFIRCLREVE----MTGTYKLKK--L 574 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~--~~~-~~~~~~-----------l~~~l~~~Lp~~~~P~~~~~~~~lP----~t~~GK~dr--~ 574 (617)
+++.||+||+...++. ++. ++.... +.+.-...++...--..+++....| ++-.|.-+| .
T Consensus 388 v~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~ 467 (626)
T KOG1175|consen 388 IYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRA 467 (626)
T ss_pred hhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhh
Confidence 9999999999766662 222 122111 1111222333332222344444444 333444442 2
Q ss_pred HHhh--cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQK--EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~--~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...+ .|| +.||| .+++|+| ||+++.||.||+|+++|+||
T Consensus 468 ~yf~k~pg~--y~tGD-~~~rd~d-GY~~i~GR~DDviNvsGhRi 508 (626)
T KOG1175|consen 468 AYFKKFPGY--YFTGD-GGRRDED-GYYWILGRVDDVINVSGHRI 508 (626)
T ss_pred hhcccCCce--EEecC-ceEEcCC-ceEEEEecccccccccceee
Confidence 2222 566 66999 9999997 99999999999999999986
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=351.77 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHHhhCCCceEEEEC---C--ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFE---N--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~---~--~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
..|+.++|.+.++++|+++|+... + +.+||+|+.++++++|++|.+.|+++||+|+|+++|+++|+++.+||+++
T Consensus 426 ~~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~ 505 (1452)
T PTZ00297 426 VRSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALY 505 (1452)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 369999999999999999999742 3 57999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCC-CC--C--CCCCCcCCcchhh
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD-SS--S--SPVPRSQALSPLL 356 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~--~~~~~~~~~~~~~ 356 (617)
|+++||+++ +.+++.+++++++++++|++.+..+.+..+.. +....++++++... .. . ........|++++
T Consensus 506 GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll 581 (1452)
T PTZ00297 506 GFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVE 581 (1452)
T ss_pred CCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHH
Confidence 999999975 36789999999999999999877776655432 24556777753211 00 0 0001134577776
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEE---ccCCCCCCceEEechHHHHHHHHHHHHHh---CCCCCCEEEEcCcchhhHHHH
Q psy8155 357 SEVPTSPPSLSYRVGVQDKLIYIY---TSGTTGLPKAAVISNHRYYFLGGAIAYQI---GFRTKDRFYTPLPLYHTAGGA 430 (617)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~a~ii~---TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~ 430 (617)
+.+...........+++|++.|+| ||||||.||||++||+|++..+....... ...++|+++.++|++|..+.+
T Consensus 582 ~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~ 661 (1452)
T PTZ00297 582 QKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV 661 (1452)
T ss_pred hcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH
Confidence 654321112223457889999996 99999999999999999999888765532 456789999999999998854
Q ss_pred HHHHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHc
Q psy8155 431 MCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLS 478 (617)
Q Consensus 431 ~~~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~ 478 (617)
..+.++..|+++.. +++..+++.|+++++|++.++|.+|+.+.+
T Consensus 662 -~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~ 705 (1452)
T PTZ00297 662 -FVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRL 705 (1452)
T ss_pred -HHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHH
Confidence 45678999999874 478999999999999999999999986654
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=255.94 Aligned_cols=210 Identities=20% Similarity=0.089 Sum_probs=162.6
Q ss_pred CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCC--CCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCC
Q psy8155 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 450 (617)
Q Consensus 373 ~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d 450 (617)
+..++++|||||||.||||+++|+++.+...+....++++. .+++++.+|++|.+++.+.++.++..|+++++.++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~ 174 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP 174 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence 45889999999999999999999999998888888887754 4689999999999888788888999999999998899
Q ss_pred HHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee-ccCCCHHHHHHHHHHcCcccccccccccccceEEe
Q psy8155 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529 (617)
Q Consensus 451 ~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~-Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~ 529 (617)
+..+++.++.+ |++.++|++++.|.+.. .++++++.+. |+++++++++++.+. +..+++|.||+||+.....
T Consensus 175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~ 247 (386)
T TIGR02372 175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVGVSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGL 247 (386)
T ss_pred hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCcceeEecCCCCCHHHHHHHHHh-cccchhheecccccccccc
Confidence 99888888653 89999999999998653 3467788766 888999999999876 4336999999999865433
Q ss_pred CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC-CCCccCCeeEEEeCCCceeeCCHHHHH
Q psy8155 530 DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF-DPNVIQDRLYYLSSKGVYEELTPEVYK 608 (617)
Q Consensus 530 ~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~-~~~~TGD~lg~~d~d~G~l~i~GR~~d 608 (617)
..... + ....+|...+ ..+ +|. +.|+ .+++||| +|++|++ |+++|+||+||
T Consensus 248 ~~~~~-~-------~~~~~p~~~~-----~~~------~~~-------~~g~~~~~~tgD-~g~~d~~-G~l~i~GR~dd 299 (386)
T TIGR02372 248 REAPD-D-------PFRLLPDLAC-----FAD------TLS-------SAGLARRLDLQD-RLAWDKD-GGFTILGRKDE 299 (386)
T ss_pred ccCCC-C-------CcccCCCccc-----cCC------Ccc-------CCCccceeecCc-eEEEcCC-CcEEEecccCC
Confidence 21100 0 0112332211 001 111 1132 2356999 9999998 99999999999
Q ss_pred HHhcCCcCC
Q psy8155 609 DLVQGNIRL 617 (617)
Q Consensus 609 ~I~~~G~~v 617 (617)
+||++|+||
T Consensus 300 ~Ik~~G~~V 308 (386)
T TIGR02372 300 ILQVGGVNV 308 (386)
T ss_pred EEEECCEEE
Confidence 999999986
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=229.27 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=165.6
Q ss_pred HHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 214 FREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLA-QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 214 ~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
++.+++++|+++|+++. +.++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++|++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 56788899999999742 2269999999999999999998 7999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeC--CCCCCCC-CCCCCcCCcchhhccCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS--PDTDSSS-SPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 363 (617)
|++ ++++++++++++..+.+. .+ ..++.+. +...... ....+..++.+.....+...
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQF 141 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCCCCCcccchhhhhhccCCCC
Confidence 995 789999999988776643 11 1222221 1110000 01112234444443222221
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 364 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.+. +...++|++.|+||||+ +|+++.... ...+++++|+++ .+|++|..|+...++.+|..|+++
T Consensus 142 ~~~-~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~ 206 (227)
T TIGR03089 142 APY-EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSL 206 (227)
T ss_pred CCC-CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceE
Confidence 111 13467899999999985 666655543 567789999999 999999999877899999999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCc
Q psy8155 444 VIRKKFSASNYFSDVCKYKCT 464 (617)
Q Consensus 444 vi~~~~d~~~l~~~i~~~~vt 464 (617)
++.+++|++.+++.|+++|||
T Consensus 207 v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 207 VLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred EEecCCCHHHHHHHHHhhcCC
Confidence 999999999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=246.45 Aligned_cols=222 Identities=16% Similarity=0.110 Sum_probs=164.7
Q ss_pred CCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc---
Q psy8155 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR--- 446 (617)
Q Consensus 370 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~--- 446 (617)
..+++++||+|||||||.||||+++|+++.+........+ ...++++...|++|..++ ..++.++..|+++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~ 108 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVS 108 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcC
Confidence 3568999999999999999999999999998887665543 456788999999999986 6678899999999883
Q ss_pred CCCCHHHHHHHHHHcC--CcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 447 KKFSASNYFSDVCKYK--CTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 447 ~~~d~~~l~~~i~~~~--vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
+.+++..+++.+++++ +++...+|..+..++..... ...++++|.++ |+++++++.+++.+ ++. +++|.||+|
T Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~-~v~~~YG~T 185 (358)
T PRK07824 109 AGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAA-AGI-NVVRTYGMS 185 (358)
T ss_pred CCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHh-cCC-cEEecccCC
Confidence 3579999999999998 56677889988877765442 23578898876 88899999998875 454 799999999
Q ss_pred ccceEEeCCCCCCCHHHHHHHHhhcCCCCCc---CcEEEEeecccCCccchhh---hHHHhhcCCCCCccCCeeEEEeCC
Q psy8155 523 EGMAAILDINKSLDVSAVSEGIKKALPSYAR---PLFIRCLREVEMTGTYKLK---KLDLQKEGFDPNVIQDRLYYLSSK 596 (617)
Q Consensus 523 E~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~---P~~~~~~~~lP~t~~GK~d---r~~L~~~g~~~~~TGD~lg~~d~d 596 (617)
|+...+...+. .+|.+.+ ...+.+-+ |.-..|+.+ ...+.++|| ++||| +|++ ++
T Consensus 186 E~~~~~~~~G~-------------~~~g~~v~i~~Gei~v~g--~~~~~gY~~~~~~~~~~~~g~--~~TGD-l~~~-~~ 246 (358)
T PRK07824 186 ETSGGCVYDGV-------------PLDGVRVRVEDGRIALGG--PTLAKGYRNPVDPDPFAEPGW--FRTDD-LGAL-DD 246 (358)
T ss_pred ccCCCcCcCce-------------eCCCCEEEecCCEEEEec--CccccccCCCcccccccCCCc--eeccc-EEEE-eC
Confidence 98654432221 1121111 01122211 122222222 222345677 77999 9999 65
Q ss_pred CceeeCCHHHHHHHhcCCcCC
Q psy8155 597 GVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 597 ~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+++++||.||+||++|+||
T Consensus 247 -g~l~i~GR~~d~i~~~G~~v 266 (358)
T PRK07824 247 -GVLTVLGRADDAISTGGLTV 266 (358)
T ss_pred -CEEEEEeccCCeEEECCEEE
Confidence 99999999999999999986
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=237.73 Aligned_cols=297 Identities=18% Similarity=0.217 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEEC--------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFE--------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~--------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~ 278 (617)
..+++..|.+.+...|+..+..+- -.++||++....++.+++.|...|...|+.|++++.++.++++.++++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~ 114 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAV 114 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeeh
Confidence 347788899999999999988763 357899999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCC----hHHHHH---HHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCC
Q psy8155 279 SKLGVITALINHNLR----QNSLLH---CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351 (617)
Q Consensus 279 ~~aG~~~vpldp~~p----~~~l~~---il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 351 (617)
+++|.+++|+||++| ++++.. .+......++.- .+.+.....+.-....+... ...
T Consensus 115 ~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~----l~i~~~~~~~~~~~~sv~~~-------------~~~ 177 (1032)
T KOG1178|consen 115 LAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRR----LNIIDILLNSLFPKLSVETI-------------ADS 177 (1032)
T ss_pred hhcceEEEEecCCCcccccchHHHhhhhhheeccceehhh----hhhHHHHhhccccccchhhc-------------cch
Confidence 999999999999999 332222 111111111111 01111110000000000000 000
Q ss_pred cchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH
Q psy8155 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 431 (617)
+..+.. .......+...+++.+++.|||||||.||||.-+|..+.+...|....+..+..++.-.....+++.. +.
T Consensus 178 f~~~~~---~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~-i~ 253 (1032)
T KOG1178|consen 178 FQMVLH---NEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDT-IQ 253 (1032)
T ss_pred hhhhhc---cCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccc-hH
Confidence 111111 11111223456788999999999999999999999999999999999999998888755556666555 56
Q ss_pred HHHHHhHcCcEEEEcC-C---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC----------CC---ccCceeeee
Q psy8155 432 CIGQALIFGCCVVIRK-K---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP----------ED---KAHNVRLMF 494 (617)
Q Consensus 432 ~~~~~L~~G~~lvi~~-~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------~~---~l~~lr~v~ 494 (617)
.++.+++.++..++++ . ..+.++.+++++++++..+.+|++.+.++...... .. ..+.|+...
T Consensus 254 ~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~ 333 (1032)
T KOG1178|consen 254 KFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVV 333 (1032)
T ss_pred HHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeee
Confidence 6666666666655554 2 23799999999999999999999988777654431 01 123566555
Q ss_pred --ccCCCHHHHHHHHHHcCccccccccccccc
Q psy8155 495 --GNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524 (617)
Q Consensus 495 --Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 524 (617)
||+....+...+...+...-+..-|++||.
T Consensus 334 ~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~ 365 (1032)
T KOG1178|consen 334 LGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDP 365 (1032)
T ss_pred ecCCccchhhhhhhhhcccceeeeecccCCCC
Confidence 888888888877666544334455888877
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=227.88 Aligned_cols=236 Identities=14% Similarity=0.068 Sum_probs=164.5
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHH---HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA---IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.+++.++++|||||||.||+|.++|+++...... ....+++.++|+++...++.+..+.....+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4567899999999999999999999998765433 3344688999999887665443332333556788999999888
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
..+++.+++.|+++++|++.++|+++..|++....... ...++|.++ ||+++++..+.+.+.|+. +++|.||+||
T Consensus 153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~-~v~~~YG~tE 231 (422)
T TIGR02155 153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGM-KATDIYGLSE 231 (422)
T ss_pred CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCC-ceEecccchh
Confidence 77889999999999999999999999988765332221 235788766 899999999999999986 7999999999
Q ss_pred cce-EEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccCCccchhhhHHHhhcCC--CCCccCCeeEEEeC
Q psy8155 524 GMA-AILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEMTGTYKLKKLDLQKEGF--DPNVIQDRLYYLSS 595 (617)
Q Consensus 524 ~~~-~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~t~~GK~dr~~L~~~g~--~~~~TGD~lg~~d~ 595 (617)
+.. .+........ ...+++.. ...+.+++. +|....|.+--..+.+..+ .+|+||| ++++++
T Consensus 232 ~~~~~~~~~~~~~~-------~g~~~~~~--~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~~~~p~~ry~TGD-l~~~~~ 301 (422)
T TIGR02155 232 VIGPGVAMECVETQ-------DGLHIWED--HFYPEIIDPHTGEVLPDGEEGELVFTTLTKEALPVIRYRTRD-LTRLLP 301 (422)
T ss_pred hcCCceeecccccC-------CCceEecC--eeEEEEECCCCCCCCCCCCeeEEEEecCCccccceeeEEcCc-EEEEEC
Confidence 842 1211100000 00111100 012234431 3333345543333333332 3488999 999988
Q ss_pred CCc-----eeeCCHHHHHHHhcCCcCC
Q psy8155 596 KGV-----YEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 596 d~G-----~l~i~GR~~d~I~~~G~~v 617 (617)
+.| +++|+||.||+||++|+||
T Consensus 302 ~~Gr~~~~~~~i~GR~~d~i~~~G~~v 328 (422)
T TIGR02155 302 GTARTMRRMDRITGRSDDMLIIRGVNV 328 (422)
T ss_pred CCCCcccccccccCccCCeEEECCEEE
Confidence 524 6899999999999999886
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=199.75 Aligned_cols=228 Identities=14% Similarity=0.066 Sum_probs=160.7
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
..++++.|.|||||||+||+|.++|.++.......... .+++++|+++...+..+..+.....++++..|++++...
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 45688999999999999999999999998776555443 488999999999888876664333456678888876443
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
. ....++.|+++++|++..+|+.+..|.+....... ...++|.++ ||+++++..+.+.+.+++ +++|.||+||
T Consensus 164 ~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~-~v~~~YG~TE 240 (445)
T TIGR03335 164 K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGC-EVYNTYGSTE 240 (445)
T ss_pred c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCC-cEEecCChhh
Confidence 3 34568999999999999999988777654222211 235788776 889999999999988886 7999999999
Q ss_pred cceEEeCCCCCCCHHHHHHHHhhcCCCCCcCc---EEEEeec-----ccCCccchhhhHHHhhc----CC--CCCccCCe
Q psy8155 524 GMAAILDINKSLDVSAVSEGIKKALPSYARPL---FIRCLRE-----VEMTGTYKLKKLDLQKE----GF--DPNVIQDR 589 (617)
Q Consensus 524 ~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~---~~~~~~~-----lP~t~~GK~dr~~L~~~----g~--~~~~TGD~ 589 (617)
+......... ..+.++. .+.++|. +|-...|.+--..|.++ ++ ..|+|||
T Consensus 241 ~~~~~~c~~~---------------~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~PliRYrtgD- 304 (445)
T TIGR03335 241 GTMCGECQAV---------------AGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGSLLINYDTED- 304 (445)
T ss_pred hhheEEecCC---------------CCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCceEEEeecCc-
Confidence 8422211110 1122222 3445552 34444566655566543 34 5578999
Q ss_pred eEEEe--CC---C---ceeeCCHHHHHHHhcCCcCC
Q psy8155 590 LYYLS--SK---G---VYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 590 lg~~d--~d---~---G~l~i~GR~~d~I~~~G~~v 617 (617)
++++. +. | -.+...||.|||||++|.||
T Consensus 305 ~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~ 340 (445)
T TIGR03335 305 TTVVISRDRCPCGRTHMRILNPEREAETIWISGVPF 340 (445)
T ss_pred eEEEecCCCCCCCCCcceeCCCcccCceEEECCEEe
Confidence 99973 22 1 12456799999999999986
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=153.66 Aligned_cols=293 Identities=15% Similarity=0.145 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
.++.+.++-+++.+|+.+|+..- ..++||++|..++.++|..|+.. -+++||.|+++++++.|++++++||+.
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 57999999999999999999874 46899999999999999999965 579999999999999999999999999
Q ss_pred cCCeEEecCCCCC------hHHHHHHHHhcCceEEEEccchHHHHHHHHHh--cC-CCeE-EEEeCCCCCCCCCCCCCcC
Q psy8155 281 LGVITALINHNLR------QNSLLHCINIAGVSAFIYGAELTDAVQEISTS--LG-SNVK-LFSWSPDTDSSSSPVPRSQ 350 (617)
Q Consensus 281 aG~~~vpldp~~p------~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~--~~-~~~~-~i~~~~~~~~~~~~~~~~~ 350 (617)
+|.+.+|+.|-.. -+.+..|++.+++..|+++......++.-... .. ...+ +++.++...
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~---------- 919 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE---------- 919 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch----------
Confidence 9999999988643 35678899999999999998876655432111 10 0011 111111100
Q ss_pred Ccchhhcc-CCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHH
Q psy8155 351 ALSPLLSE-VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 351 ~~~~~~~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 429 (617)
.+...... .....+..+-..+++.+||+-+.--++|.--||..+|.++.+.+....+...+.+..-++...+.+...|+
T Consensus 920 t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf 999 (1363)
T KOG3628|consen 920 TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGF 999 (1363)
T ss_pred hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhH
Confidence 00000000 00011111112356889999888889999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCce------eeee--ccC
Q psy8155 430 AMCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNV------RLMF--GNG 497 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~l------r~v~--Ge~ 497 (617)
....+...++|.+-++.+. .+|..|++.|++++|.-++.+=+.+..+....+....+++.. -+++ -|.
T Consensus 1000 ~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~R 1079 (1363)
T KOG3628|consen 1000 NHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEER 1079 (1363)
T ss_pred HHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCc
Confidence 7777788899998777663 589999999999999888888777877766543322222111 1222 344
Q ss_pred CCHHHHHHHHHHc
Q psy8155 498 LRPQIWSEFVDRF 510 (617)
Q Consensus 498 l~~~~~~~~~~~~ 510 (617)
....+++.|.+.|
T Consensus 1080 Pr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1080 PRIALIASFKKLF 1092 (1363)
T ss_pred cHHHHHHHHHHHH
Confidence 5566777777665
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=149.15 Aligned_cols=230 Identities=16% Similarity=0.101 Sum_probs=160.9
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.-++...|--||||||+|+-+..++..+......+... .+...+|++..........+-...-.++--.|++++-..
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~ 167 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPIS 167 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccC
Confidence 34566678899999999999999998776665554443 477889988776553333222122334445677776555
Q ss_pred CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC--CccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE--DKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 448 ~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
.-+.+.-+++|+.+++|++.++|+.+..|.+...... ..-.+++.++ +|+++++..+.+.++|++ ..++.||.||
T Consensus 168 ~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~-~~~diYGltE 246 (438)
T COG1541 168 GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGC-KAFDIYGLTE 246 (438)
T ss_pred CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCC-ceeecccccc
Confidence 5688889999999999999999999998887765542 3345677666 699999999999999998 6899999999
Q ss_pred cceEE--e-CCC--CCCCHHHHHHHHhhcCCCCCcCcEEEEee-----cccCCccchhhhHHHhhcCC--CCCccCCeeE
Q psy8155 524 GMAAI--L-DIN--KSLDVSAVSEGIKKALPSYARPLFIRCLR-----EVEMTGTYKLKKLDLQKEGF--DPNVIQDRLY 591 (617)
Q Consensus 524 ~~~~v--~-~~~--~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-----~lP~t~~GK~dr~~L~~~g~--~~~~TGD~lg 591 (617)
....- . ... -.+.. ++ ..+.+++ .+|-+.-|.+--..|.+++. ..|+||| ++
T Consensus 247 ~~g~g~~eC~~~~glhi~e------------D~---~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~~PlIRYrtgD-it 310 (438)
T COG1541 247 GFGPGAGECTERNGLHIWE------------DH---FIFEIVDPETGEQLPDGERGELVITTLTKEGMPLIRYRTGD-IT 310 (438)
T ss_pred ccCCcccccccccCCCcch------------hh---ceeeeecCCcCccCCCCCeeEEEEEeccccCcceEEEEcCC-ee
Confidence 84331 1 111 11111 01 1122222 24555556665666667776 5578999 99
Q ss_pred EEeCC--------CceeeCCHHHHHHHhcCCcCC
Q psy8155 592 YLSSK--------GVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 592 ~~d~d--------~G~l~i~GR~~d~I~~~G~~v 617 (617)
++.++ --.-+|.||.+||+++.|.||
T Consensus 311 ~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~v 344 (438)
T COG1541 311 VILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNV 344 (438)
T ss_pred EecccCCCCCCccccccccCcccccEEEECCEEe
Confidence 99984 123569999999999999986
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=121.55 Aligned_cols=213 Identities=15% Similarity=0.026 Sum_probs=125.2
Q ss_pred eEEEEEccCCCCCCceEEechHHHHHHHHHHHH-H--hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcE-EEEcC-CC
Q psy8155 375 KLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY-Q--IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC-VVIRK-KF 449 (617)
Q Consensus 375 ~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~--~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~-lvi~~-~~ 449 (617)
-..+.-||||||+|-.+.++............. . .++..++++..+.. ..+ .++..+.+... +...+ ..
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~---~~~---~ly~~~~~~~~~~~~~~l~~ 174 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLR---ADN---NLYQSVNNRWISLDFFDLLA 174 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEc---cCh---hHHHHHHhccceeeecCCCc
Confidence 445678999999999999998866443322211 1 24556666554421 011 11122222111 22222 25
Q ss_pred CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceE
Q psy8155 450 SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527 (617)
Q Consensus 450 d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 527 (617)
+.+..++.|++++++++.+.|+.+..|.+........ .+++.++ ||.++++..+.+.+.|++ ++++.||+||+..+
T Consensus 175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~-~V~~~YG~tEg~la 252 (430)
T TIGR02304 175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKN-TVHQIYQATEGFLA 252 (430)
T ss_pred CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCC-CeeEccCCchhheE
Confidence 6889999999999999999999999988754332222 3455554 999999999999999997 69999999995333
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc--hhhhHHHhhcCC--CCCccCCeeEEEeCC----Cc-
Q psy8155 528 ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY--KLKKLDLQKEGF--DPNVIQDRLYYLSSK----GV- 598 (617)
Q Consensus 528 v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G--K~dr~~L~~~g~--~~~~TGD~lg~~d~d----~G- 598 (617)
+...... |.+-..+.+++.-...+.| ..--..|...++ ..|+||| ++.+.++ |.
T Consensus 253 ~eC~~g~----------------lHl~ed~~~vE~~ivD~~~~~~~ViT~L~n~~~PlIRYrtGD-~~~~~~~~C~CGr~ 315 (430)
T TIGR02304 253 STCRCGT----------------LHLNEDLVHIEKQYLDEHKRFVPIITDFTRTTQPIVRYRLND-ILVESEQPCSCGSA 315 (430)
T ss_pred EecCCCC----------------EEEccccEEEEeeEECCCCceEEEEecCCCccceEEeeeCCC-EEEeCCCCCCCCCc
Confidence 2221111 1111111222200001111 101112222333 5578999 9888654 11
Q ss_pred --ee-eCCHHHHHHHhc
Q psy8155 599 --YE-ELTPEVYKDLVQ 612 (617)
Q Consensus 599 --~l-~i~GR~~d~I~~ 612 (617)
.+ .|.||.+|+++.
T Consensus 316 ~~~i~~I~GR~dD~l~~ 332 (430)
T TIGR02304 316 TMAIERIEGRQDDIFQL 332 (430)
T ss_pred ccccCCccCccCCEEEE
Confidence 23 489999999985
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=104.57 Aligned_cols=282 Identities=15% Similarity=0.127 Sum_probs=188.2
Q ss_pred HHHHHHHHHhhCCCceEEEEC-----CceecHHHHHHHHHHHHH-HHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhc
Q psy8155 210 IADIFREHAVRSPNKVIFMFE-----NTEWTAQQVEAYSNRVAN-FFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKL 281 (617)
Q Consensus 210 l~~~~~~~a~~~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~-~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~a 281 (617)
+...++..-..++...|.++- ...+||..+..++.+.|+ .|.+-|..++++|.++... ..++++.++||...
T Consensus 96 ~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~ 175 (1363)
T KOG3628|consen 96 IIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLL 175 (1363)
T ss_pred hHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhcccccc
Confidence 444455555677788888774 357999999999999999 7888999999999999975 47999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC--CCeEEEEeCCCCCCCCCCCCCcCCcchhhccC
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG--SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (617)
|.+.+|+.+.+..+++..+++....+++++.......+........ ...+.+. ..++.......
T Consensus 176 g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~--------------t~~~k~~~~~~ 241 (1363)
T KOG3628|consen 176 GIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWK--------------TNDFKGNYTKD 241 (1363)
T ss_pred ceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhh--------------cccccceeehh
Confidence 9999999999999999999999999999988765544332210000 0000000 00010000000
Q ss_pred CCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHH---------------HHH-----HHHhCCCCCCEEEE
Q psy8155 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG---------------GAI-----AYQIGFRTKDRFYT 419 (617)
Q Consensus 360 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~---------------~~~-----~~~~~~~~~d~~l~ 419 (617)
.... ++.... ..||-||++++|.=-||+.+|+ +.+.. .++ ...++....+.++.
T Consensus 242 k~~~----P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 242 KIKK----PRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred hccC----Cceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 0111 122223 8999999999999999999998 43322 222 22234455666666
Q ss_pred cCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHH----cCCC-------CCCC
Q psy8155 420 PLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLL----STPE-------KPED 485 (617)
Q Consensus 420 ~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~----~~~~-------~~~~ 485 (617)
....+-..|+++..+.+|++|.|.+.+|+ ..|..+..++.+++.+++..=-..++... +.++ ....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 66666667788888999999999999986 67889999999999998765322222211 1111 1113
Q ss_pred ccCceeeee--ccCCCHHH----HHHHHHHcC
Q psy8155 486 KAHNVRLMF--GNGLRPQI----WSEFVDRFR 511 (617)
Q Consensus 486 ~l~~lr~v~--Ge~l~~~~----~~~~~~~~~ 511 (617)
+++++|.+. -..+..+. ..+|.+-.+
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg 427 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLG 427 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhccccc
Confidence 577888766 55555443 344554333
|
|
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-08 Score=81.67 Aligned_cols=70 Identities=19% Similarity=0.135 Sum_probs=42.2
Q ss_pred hcCCccc-----ccCCCCccccCcCCcc--------c--cCCCCccccc-cCCCCCccccccccccccc-----chhhhh
Q psy8155 90 EIGDSAF-----LSDPPKNTTYNKKGLC--------S--RCEPGVFIGK-IVPSNPARAYLGYVNEKDS-----AKKIFT 148 (617)
Q Consensus 90 ~hqd~Pf-----~~~~~r~~~~~~l~~~--------~--~~~~gl~~~~-~~~~~~~~~dl~~~~~~~~-----~~~~~~ 148 (617)
+||+||| .+++.|+.+++|+||+ . ...+|+.+.. ....+.++|||++.+.+.+ ..+|.+
T Consensus 1 ~hq~~Pf~~lv~~l~~~r~~~~~plfqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~Y~~ 80 (91)
T PF13745_consen 1 EHQDYPFERLVEALGPPRDPSRNPLFQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLEYNT 80 (91)
T ss_dssp -T--S-HHHHHHHT-----TTS-SS-SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEEEET
T ss_pred CCccCCHHHHHHHhCcccCCccccccCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEEEEh
Confidence 6999999 8999999999999998 1 1226777666 5668999999999999877 349999
Q ss_pred hhhhccchhhh
Q psy8155 149 DVFEIGDSAFL 159 (617)
Q Consensus 149 ~~f~~~~~~~~ 159 (617)
++|+.++|++|
T Consensus 81 ~lf~~~ti~~~ 91 (91)
T PF13745_consen 81 DLFSEETIERM 91 (91)
T ss_dssp TT--HHHHHHH
T ss_pred HhCCHHHHhcC
Confidence 99999998765
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=95.37 Aligned_cols=187 Identities=40% Similarity=0.731 Sum_probs=139.2
Q ss_pred CccccccCCCCceeeecccccccccceeEEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccc
Q psy8155 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDS 80 (617)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~ 80 (617)
|.+++|++|..||+||.+.++..++|+.|.|+|...|.|+.|..|.+.|+..+..|++|-.+.-+..+.....+.+
T Consensus 394 n~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g---- 469 (649)
T KOG1179|consen 394 NSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAG---- 469 (649)
T ss_pred cceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccC----
Confidence 7889999999999999999999999999999999999999999999999999999999999876665433333221
Q ss_pred hhhhhhhhhhcCCcccccCCCCccccCcCCccccCCCCccccccCCCCCcccccccccccccchhhhhhhhhccchhhhc
Q psy8155 81 AKKIVTDVFEIGDSAFLSDPPKNTTYNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLS 160 (617)
Q Consensus 81 v~~~~~~a~~hqd~Pf~~~~~r~~~~~~l~~~~~~~~gl~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~f~~~~~~~~~ 160 (617)
-.+..+.+-..|+|..+|..+.+
T Consensus 470 ---------------------------------------------------------~~~~t~kKl~rDVFkkGD~~f~t 492 (649)
T KOG1179|consen 470 ---------------------------------------------------------PKKATEKKLLRDVFKKGDVYFNT 492 (649)
T ss_pred ---------------------------------------------------------chhhhhhhhHHhhhccCcEEEee
Confidence 12333557889999999999999
Q ss_pred ccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHH
Q psy8155 161 GDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVE 240 (617)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~ 240 (617)
++++.....+++..-++.-+.. .+.++.++=.|..
T Consensus 493 GDlLv~D~~GylYF~DRtGDTF---------------------------------------------RWKGENVsTtEVe 527 (649)
T KOG1179|consen 493 GDLLVADELGYLYFKDRTGDTF---------------------------------------------RWKGENVSTTEVE 527 (649)
T ss_pred CcEEEEecCCcEEEeccCCCce---------------------------------------------eecCCcccHHHHH
Confidence 9999999999999888766541 2234444545554
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCC--ChHHHHHHHHhcCceE
Q psy8155 241 AYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL--RQNSLLHCINIAGVSA 308 (617)
Q Consensus 241 ~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~--p~~~l~~il~~~~~~~ 308 (617)
.....+. +++.=-+.+|..|.... |+|.+.+-++|.. ..+++...+...=|..
T Consensus 528 ~~l~~~~------~~~dv~VYGV~VP~~EG---------RaGMAaI~~~p~~~~d~~~l~~~l~~~LP~Y 582 (649)
T KOG1179|consen 528 DVLSALD------FLQDVNVYGVTVPGYEG---------RAGMAAIVLDPTTEKDLEKLYQHLRENLPSY 582 (649)
T ss_pred HHHhhhc------cccceeEEEEecCCccC---------ccceEEEEecCcccchHHHHHHHHHhhCccc
Confidence 4433332 23333467788887654 7888888877764 3455555555555543
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.7e-05 Score=79.38 Aligned_cols=220 Identities=13% Similarity=0.096 Sum_probs=115.8
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh---C-CCCC-CEEEEcCcchhhHHH----HHHHHHHhHcCc
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI---G-FRTK-DRFYTPLPLYHTAGG----AMCIGQALIFGC 441 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~-~~~~-d~~l~~~p~~~~~~~----~~~~~~~L~~G~ 441 (617)
.++++..++-||||||.|--+.+.+..+......+...+ . .... -.++...|-...... .......+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 345677889999999998656666655555543333332 2 2221 223333332221111 112223344555
Q ss_pred EEEEcC-CCCHHHHHHHHH----HcCCcEEeecHHHHHHHHcCCCCCC--CccC-ceeeee--------ccCCC-HHHHH
Q psy8155 442 CVVIRK-KFSASNYFSDVC----KYKCTVGQYIGEMCRYLLSTPEKPE--DKAH-NVRLMF--------GNGLR-PQIWS 504 (617)
Q Consensus 442 ~lvi~~-~~d~~~l~~~i~----~~~vt~~~~~P~~~~~l~~~~~~~~--~~l~-~lr~v~--------Ge~l~-~~~~~ 504 (617)
.-.+-. .+|.+.+.+.+. +.++..+++.|.++-.++...+... ..++ ..+++- ++.++ .+..+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 533322 367777766553 4557778888876655554322222 2232 333442 24465 45666
Q ss_pred HHHHHcCc---ccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeeccc--CCccch---hhh---
Q psy8155 505 EFVDRFRI---AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVE--MTGTYK---LKK--- 573 (617)
Q Consensus 505 ~~~~~~~~---~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP--~t~~GK---~dr--- 573 (617)
.+.+.|+. .++++.||+||.....+..+.. ..+ +|..+.+.|.-. .-+.|| +.-
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~----------~~~-----~p~wV~iRDp~tl~~~~~Ge~Gli~vidl 311 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHG----------HFH-----VPPWVIIRDPETLEPLPPGETGLIQVIDL 311 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCCCC----------ccc-----CCCeEEEECCCCCcCCCCCCeeEEEEEcc
Confidence 67777876 4899999999975433322211 113 333444444421 122344 222
Q ss_pred HHHhhcCCCCCccCCeeEEEeCC-------CceeeCCHHHHH
Q psy8155 574 LDLQKEGFDPNVIQDRLYYLSSK-------GVYEELTPEVYK 608 (617)
Q Consensus 574 ~~L~~~g~~~~~TGD~lg~~d~d-------~G~l~i~GR~~d 608 (617)
-...-.++ .-|.| +|.+..+ +.++.++||.+.
T Consensus 312 ~~~s~p~~--IlTeD-lGvl~~~~~c~cr~g~~f~vlGR~~~ 350 (365)
T PF04443_consen 312 ANTSYPGF--ILTED-LGVLHGDDDCGCRKGKYFEVLGRADG 350 (365)
T ss_pred cccCCCcE--EEEcc-eeeecCCCCCCCccCCEEEEEeCCCC
Confidence 12222344 44999 9988764 138999999864
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-05 Score=83.96 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=68.7
Q ss_pred ccCCCHHHHHHHHHHcCcc---ccc----ccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIA---QIG----EFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~---~l~----n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.++|..++.+.-.+|.+ .++ +.||-+= +|+|+ .++...+++++.++++++||.|++|..+.|++++|+|
T Consensus 438 G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p-~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs 516 (537)
T KOG1176|consen 438 GEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETP-AAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVFVDELPKT 516 (537)
T ss_pred CEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcc-eEEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEEeccCCCC
Confidence 8889999999998888764 111 2233222 55566 5588999999999999999999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||+.|+.|++.
T Consensus 517 ~~GKi~R~~lr~~ 529 (537)
T KOG1176|consen 517 PNGKILRRKLRDI 529 (537)
T ss_pred CcchHHHHHHHHH
Confidence 9999999999864
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=79.10 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=70.0
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpld 289 (617)
.++.+|.+.. +-.+|++.+...+..+. ...++++++++...++-. ..+...+++++..|+..++.
T Consensus 164 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~- 239 (513)
T PRK07656 164 DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWA---EYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL- 239 (513)
T ss_pred CCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHH---HhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-
Confidence 4566776542 23588998876555443 344788999998888753 34456688999999988875
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
+....+.+...+++.++.++...+.....+.
T Consensus 240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 270 (513)
T PRK07656 240 PVFDPDEVFRLIETERITVLPGPPTMYNSLL 270 (513)
T ss_pred CcCCHHHHHHHHHHhCCeEEechHHHHHHHH
Confidence 5577888999999999999988877665543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00024 Score=78.43 Aligned_cols=308 Identities=15% Similarity=0.107 Sum_probs=165.9
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC--CCHHHHHHHHHHHhcCCeEEec
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE--NRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~--~s~~~iva~lA~~~aG~~~vpl 288 (617)
..|+.+|++.. +-.+|++.+...+..+...+... +++++++...+| ....+...+++.+..|+.++..
T Consensus 168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~-~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~ 246 (534)
T COG0318 168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGG-LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLL 246 (534)
T ss_pred CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhccc-CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeC
Confidence 45788887753 34589998887766665555432 778888787877 5667778888889999999888
Q ss_pred CC-CCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 289 NH-NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 289 dp-~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
.+ .+..+.+...+.+.++..+..-+.+...+.......+.
T Consensus 247 ~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~--------------------------------------- 287 (534)
T COG0318 247 SPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDD--------------------------------------- 287 (534)
T ss_pred CCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCcc---------------------------------------
Confidence 76 68888888888888877776666555442221000000
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchh---hHHHHHHHHHHhHcCcEEE
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH---TAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~---~~~~~~~~~~~L~~G~~lv 444 (617)
..+...-+++ +|+--.|..++-.-...... ..+.+.||+++..-+....+... ..+.+ +-...|..+.
T Consensus 288 ---~~~~~lr~~~-~gg~~~~~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~----G~~~pg~~v~ 358 (534)
T COG0318 288 ---DLSSSLRLVL-SGGAPLPPELLERFEERFGP-IAILEGYGLTETSPVVTINPPDDLLAKPGSV----GRPLPGVEVR 358 (534)
T ss_pred ---ccccceEEEE-ecCCcCCHHHHHHHHHHhCC-CceEEeecccccCceeecCCCchhhhcCCcc----cccCCCcEEE
Confidence 0000011111 22221122111100000000 01223445555443222222221 01100 2233344444
Q ss_pred EcCCCCHHHHHHHHHHcCC-cEEeecHHHHHHHHcCC-----------CCCCCc---------------cCceeeeeccC
Q psy8155 445 IRKKFSASNYFSDVCKYKC-TVGQYIGEMCRYLLSTP-----------EKPEDK---------------AHNVRLMFGNG 497 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~v-t~~~~~P~~~~~l~~~~-----------~~~~~~---------------l~~lr~v~Ge~ 497 (617)
+.+...-..+- -.+ .++.--|+++.-..+.+ ....-+ .+.+-...|+.
T Consensus 359 Ivd~~~~~~~p-----g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~n 433 (534)
T COG0318 359 IVDPDGGEVLP-----GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGEN 433 (534)
T ss_pred EEeCCCCccCC-----CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeE
Confidence 44421100000 001 01111233332222210 100001 11221222888
Q ss_pred CCHHHHHHHHHHcCccccccccccc-----ccc-eEEe-CCC--CCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 498 LRPQIWSEFVDRFRIAQIGEFYGAT-----EGM-AAIL-DIN--KSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 498 l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~-~~v~-~~~--~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
+.+..++......+.+.-.-.+|-- |.. ++++ .++ ...+.++++++++.+++.|++|..+.+++++|+|++
T Consensus 434 i~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~s 513 (534)
T COG0318 434 IYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVFVDELPRTAS 513 (534)
T ss_pred ECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCc
Confidence 9999999998888754333333332 333 3333 222 344789999999999999999999999999999999
Q ss_pred chhhhHHHhhcCC
Q psy8155 569 YKLKKLDLQKEGF 581 (617)
Q Consensus 569 GK~dr~~L~~~g~ 581 (617)
||++|+.|++...
T Consensus 514 GKi~r~~lr~~~~ 526 (534)
T COG0318 514 GKIDRRALREEYR 526 (534)
T ss_pred hhhhHHHHHHHHH
Confidence 9999999987754
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0004 Score=77.25 Aligned_cols=85 Identities=25% Similarity=0.324 Sum_probs=63.4
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++.....++...=.-.+|. .|.. ++++ .++...+..++++++.++||.|++|..+.+++++|+|.
T Consensus 457 G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~ 536 (559)
T PRK08315 457 GENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFVDEFPMTV 536 (559)
T ss_pred CEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEcccCCCCC
Confidence 788888888887777664311122221 2333 3333 44445677899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|..|++.
T Consensus 537 ~GK~~r~~L~~~ 548 (559)
T PRK08315 537 TGKIQKFKMREM 548 (559)
T ss_pred CCceeHHHHHHH
Confidence 999999999865
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00038 Score=77.34 Aligned_cols=85 Identities=20% Similarity=0.283 Sum_probs=64.2
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc-----ccccceE-Ee-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG-----ATEGMAA-IL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG-----~TE~~~~-v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+++..++......+...=.-.+| ..|..+. ++ .++...+..+++.++.++||.|++|..+.+++++|+|+
T Consensus 458 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~ 537 (558)
T PRK12583 458 GENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRFVDEFPMTV 537 (558)
T ss_pred CEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEEeccCCCCC
Confidence 88899988888877766432222222 1244333 33 44445678899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|++.
T Consensus 538 sGK~~r~~L~~~ 549 (558)
T PRK12583 538 TGKVQKFRMREI 549 (558)
T ss_pred CCCccHHHHHHH
Confidence 999999999765
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.3e-05 Score=82.53 Aligned_cols=97 Identities=4% Similarity=-0.117 Sum_probs=68.5
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iva~lA~~~aG~~~vpld 289 (617)
.++.+|++.. +-.+|++.+...+. ......++++++++....+.... ....+++.+..|+..+...
T Consensus 203 ~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~ 279 (570)
T PRK04319 203 DREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ---TGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG 279 (570)
T ss_pred CCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHH---HHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence 3566666642 23578887754433 33344578889987766654432 2456778889999988877
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
.....+++...+++.++..+...+.....+.
T Consensus 280 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 310 (570)
T PRK04319 280 GRFSPERWYRILEDYKVTVWYTAPTAIRMLM 310 (570)
T ss_pred CCCCHHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 7788899999999999999998887666543
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00051 Score=73.67 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=66.5
Q ss_pred CCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCeEEecCCC
Q psy8155 222 PNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP-EFVCLWLGLSKLGVITALINHN 291 (617)
Q Consensus 222 p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~-~~iva~lA~~~aG~~~vpldp~ 291 (617)
++.+|++.. +-.+|++.+...+..++.. .++++++++...++-.. ..+..+++.+..|+..+..++.
T Consensus 110 ~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~ 186 (436)
T TIGR01923 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKEN---LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF 186 (436)
T ss_pred cCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhh---cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH
Confidence 456666542 2368999988776666554 47899999988877432 2234568889999998887653
Q ss_pred CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 292 LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 292 ~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
+++...+++.++.++...+.....+
T Consensus 187 ---~~~~~~l~~~~~t~~~~~P~~l~~l 211 (436)
T TIGR01923 187 ---NQLLEMIANERVTHISLVPTQLNRL 211 (436)
T ss_pred ---HHHHHHHHHhCCeEEEeHHHHHHHH
Confidence 4888899999999998887665544
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00065 Score=74.61 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=65.3
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccce-EEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMA-AIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~-~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..+++....++...=.-.+|. -|..+ +++ ..+...+..++++++.++|++|++|..+++++++|+|.
T Consensus 424 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~ 503 (515)
T TIGR03098 424 GYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNA 503 (515)
T ss_pred CEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEEeccCCCCC
Confidence 778999999888877665322233432 23333 333 44556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|+++
T Consensus 504 ~GK~~r~~L~~~ 515 (515)
T TIGR03098 504 NGKIDRKALAAE 515 (515)
T ss_pred CCCCcHHHhccC
Confidence 999999999753
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0019 Score=66.57 Aligned_cols=312 Identities=12% Similarity=0.093 Sum_probs=165.1
Q ss_pred hhCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC--CCHHHHHHHHHHHhcCCeEEe
Q psy8155 219 VRSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE--NRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 219 ~~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~--~s~~~iva~lA~~~aG~~~vp 287 (617)
...||..+.+.- +-.+|.-.+...+..++..+ |....+++++-.| ++...++..+|++.-|++.|.
T Consensus 230 ~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~---g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vf 306 (596)
T KOG1177|consen 230 WLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA---GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVF 306 (596)
T ss_pred hcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh---CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEe
Confidence 345676666552 56799998888887776654 5665556655555 456667888999999999998
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC----CCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG----SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (617)
-+|.+.+...-..+..-++..++..+...-.+........ .....+..+. ..-.+++.....
T Consensus 307 p~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa------------~~s~eLlk~iv~-- 372 (596)
T KOG1177|consen 307 PAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGA------------PVSPELLKLIVN-- 372 (596)
T ss_pred eCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCC------------CCCHHHHHHHHH--
Confidence 8999999999999999999999988765433322111110 0011111110 000011111000
Q ss_pred CCCCCCCCCCCeEEEEEccCCCCC--CceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCc
Q psy8155 364 PSLSYRVGVQDKLIYIYTSGTTGL--PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGC 441 (617)
Q Consensus 364 ~~~~~~~~~~~~a~ii~TSGSTG~--PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~ 441 (617)
...-. ...+.| |+|-. ---....|..--..+.+....+.-.+. .+.- . .+. ..++-.+|
T Consensus 373 -----~~~m~-~i~v~Y--G~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea-~iv~-~-----~g~----~v~~~~~G 433 (596)
T KOG1177|consen 373 -----QMNMK-DIAVAY--GLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEA-AIVD-K-----DGS----EVPLGTKG 433 (596)
T ss_pred -----hhCce-eeEEEe--eccccCcceeeecCCCCHHHHHhhhhhccccccc-cccc-C-----CCC----ccccCCCc
Confidence 00011 123344 44332 122222233222222222222111110 1100 0 110 11333445
Q ss_pred EEEEcCCC-------CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC-CccCcee-------eee--ccCCCHHHHH
Q psy8155 442 CVVIRKKF-------SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-DKAHNVR-------LMF--GNGLRPQIWS 504 (617)
Q Consensus 442 ~lvi~~~~-------d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~l~~lr-------~v~--Ge~l~~~~~~ 504 (617)
.+++.... +.+..-+.+.+. .+++.++... .....++ .+. ||.+-|..++
T Consensus 434 el~iRGY~tMl~Ywg~~~kT~eti~~d-------------rW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE 500 (596)
T KOG1177|consen 434 ELLIRGYSTMLGYWGEEEKTKETIGND-------------RWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELE 500 (596)
T ss_pred eEEEEechhheeecCCcccchhhcccc-------------cceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHH
Confidence 55553211 111111111111 1111111000 0011222 222 7889999999
Q ss_pred HHHHHcCcccccccccc-----cccceEEe--CCCC--CCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHH
Q psy8155 505 EFVDRFRIAQIGEFYGA-----TEGMAAIL--DINK--SLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 575 (617)
Q Consensus 505 ~~~~~~~~~~l~n~YG~-----TE~~~~v~--~~~~--~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~ 575 (617)
+|....|...=...-|- -|.+++++ ..+. ..+.++|+.+|+.+|..|++|.++++++++|+|.+|||.|-+
T Consensus 501 ~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFe 580 (596)
T KOG1177|consen 501 DFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFE 580 (596)
T ss_pred HHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhHH
Confidence 99988875422222221 23344444 2222 258899999999999999999999999999999999999988
Q ss_pred Hhhc
Q psy8155 576 LQKE 579 (617)
Q Consensus 576 L~~~ 579 (617)
+++.
T Consensus 581 ir~~ 584 (596)
T KOG1177|consen 581 IREM 584 (596)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0011 Score=72.73 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=64.0
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++...+.++..+-....|. .|. .+++. .++...+..++++++.+.|+.|++|..+.+++++|+|+
T Consensus 425 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~ 504 (521)
T PRK06187 425 GENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAFVDELPRTS 504 (521)
T ss_pred CeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEEccCCCCCC
Confidence 777888888888877764322222221 233 33333 44555678899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|.+.
T Consensus 505 ~gK~~r~~l~~~ 516 (521)
T PRK06187 505 VGKILKRVLREQ 516 (521)
T ss_pred CCCeeHHHHHHH
Confidence 999999999765
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0017 Score=70.91 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=64.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-.+|.. |. .++++ .++...+.+++++++.+.||.|++|..+.+++++|+|.
T Consensus 401 G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~ 480 (496)
T PRK06839 401 GENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNA 480 (496)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEeccCCCCc
Confidence 8888888888877777653222233322 22 23333 44556677899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|.+.
T Consensus 481 ~GKi~r~~l~~~ 492 (496)
T PRK06839 481 TGKIQKAQLVNQ 492 (496)
T ss_pred cccccHHHHHHH
Confidence 999999999764
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0011 Score=70.57 Aligned_cols=97 Identities=6% Similarity=0.005 Sum_probs=68.8
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|++.. +-.+|++.+...+..+.. ..++..++++...++-. ..++..++..+..|+..+..+
T Consensus 99 ~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~ 175 (414)
T PRK08308 99 LAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNE---ALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT 175 (414)
T ss_pred CCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHH---hhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC
Confidence 4566776653 345899988765554443 44677888887777654 345667888999999887765
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
. ...+.+...+++.++.+++..+.....+..
T Consensus 176 ~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 206 (414)
T PRK08308 176 N-KNPKFALNILRNTPQHILYAVPLMLHILGR 206 (414)
T ss_pred C-CCHHHHHHHHHHhCCeEEEcCHHHHHHHHh
Confidence 5 456778888999999999888776655443
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.8e-05 Score=87.46 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=87.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.+..++.....+|.+.-.-.+|- .+.+++|+ .++...+.++|++++++ ||.||+|..+++++++|+|++
T Consensus 866 G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~s 944 (994)
T PRK07868 866 RGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVVPEIPLSAT 944 (994)
T ss_pred CceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEeCCCCCCcc
Confidence 778999999999888876433333432 22345555 55556788999999985 999999999999999999999
Q ss_pred chhhhHHHhhcCCCCCccCCeeEEEeCC-CceeeCCHHHHHHHh
Q psy8155 569 YKLKKLDLQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDLV 611 (617)
Q Consensus 569 GK~dr~~L~~~g~~~~~TGD~lg~~d~d-~G~l~i~GR~~d~I~ 611 (617)
||++|++|++.+-- . -++.+.|+|++ ..|..++.+.-++|-
T Consensus 945 GKi~r~~L~~~~lp-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~ 986 (994)
T PRK07868 945 YRPTVSALRAAGIP-K-PGRQAWYFDPETNRYRRLTPAVRAELT 986 (994)
T ss_pred ccEehHHHHhcCCC-C-CCCceEEEcCCCCeeEECCHHHHHHHh
Confidence 99999999999873 2 34448899866 357778888888775
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=72.89 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|++.. +-.+|++.+...+... ....++.++|++..++|-. ..+...++..+..|+..+...
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~ 257 (539)
T PRK06334 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRAC---LKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAY 257 (539)
T ss_pred CcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHH---HHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEec
Confidence 5678887653 3458998887554433 3345788899988887732 333345677788898877665
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
.....+++...+++.++..+...+.....+.
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 288 (539)
T PRK06334 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYIL 288 (539)
T ss_pred CCCCHHHHHHHHHHhCCcEEEecHHHHHHHH
Confidence 4567788999999999999998887766554
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=73.66 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=62.9
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t 566 (617)
|..+++..++......+...-...+|-. |. .++++ .++...+.+++.+++.+ .|++||+|..+.+++++|+|
T Consensus 449 G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t 528 (547)
T PRK13295 449 GENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRT 528 (547)
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEEeccCCCC
Confidence 7889999998888777653222333311 22 33333 44445667889999986 79999999999999999999
Q ss_pred ccchhhhHHHhh
Q psy8155 567 GTYKLKKLDLQK 578 (617)
Q Consensus 567 ~~GK~dr~~L~~ 578 (617)
.+||++|++|++
T Consensus 529 ~sgK~~r~~L~~ 540 (547)
T PRK13295 529 PSGKIQKFRLRE 540 (547)
T ss_pred CCccccHHHHHH
Confidence 999999999875
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.001 Score=74.05 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP-EFVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~-~~iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|++.+...+.... ...++.+++++..++|-.- ..+..+++.+..|+..+.. +
T Consensus 170 ~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~-~ 245 (563)
T PLN02860 170 APDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKI---AIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLL-P 245 (563)
T ss_pred CCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHH---hhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEec-C
Confidence 4677777652 34578888765444332 3457889998888777432 2234567888899887765 4
Q ss_pred CCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 291 ~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.+..+.+...+++.++..+...+.....+..
T Consensus 246 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 276 (563)
T PLN02860 246 KFDAKAALQAIKQHNVTSMITVPAMMADLIS 276 (563)
T ss_pred CCCHHHHHHHHHHhCCeeEEeChHHHHHHHH
Confidence 5778889999999999999998877665543
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=71.37 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|..+.+..++......+..+-....|.. |..+.++..+...+.+++++++.+.|++|++|..++.++++|+|++|
T Consensus 390 G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~g 469 (483)
T PRK03640 390 GENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVPKRFYFVEELPRNASG 469 (483)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHHHHHHHhccCCCCCcEEEEeCCCCCCCcc
Confidence 8888888888887776653222222221 12333233455677889999999999999999999999999999999
Q ss_pred hhhhHHHhhc
Q psy8155 570 KLKKLDLQKE 579 (617)
Q Consensus 570 K~dr~~L~~~ 579 (617)
|++|++|.+.
T Consensus 470 K~~r~~l~~~ 479 (483)
T PRK03640 470 KLLRHELKQL 479 (483)
T ss_pred ceeHHHHHHH
Confidence 9999999764
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00047 Score=76.10 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...-.-.+|.. |. .++++......+..++++++.++ +|.|++|..+.+++++|+|+
T Consensus 438 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~ 517 (527)
T TIGR02275 438 GEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAAQLRRFLRERGLAEYKLPDRVEFIDSLPLTA 517 (527)
T ss_pred CEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHHHHHHHHHhCCCccccCCCEEEEeccCCCCC
Confidence 8888999888888877754333334432 22 44555444457788999999985 99999999999999999999
Q ss_pred cchhhhHHHh
Q psy8155 568 TYKLKKLDLQ 577 (617)
Q Consensus 568 ~GK~dr~~L~ 577 (617)
+||++|+.|+
T Consensus 518 sGKv~r~~L~ 527 (527)
T TIGR02275 518 VGKIDKKALR 527 (527)
T ss_pred ccceeHHhcC
Confidence 9999999873
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=72.53 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=66.3
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc-----ccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG-----ATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG-----~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.++.++.....++...-...+| ..+..++++ .++...+.+++++++.++||.|++|..+.+++++|+|.+
T Consensus 436 G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~ 515 (540)
T PRK06164 436 GFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQVVEAFPVTES 515 (540)
T ss_pred CEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEEecCCCCCCC
Confidence 88899999988887776532223333 334455555 344557788999999999999999999999999999999
Q ss_pred c---hhhhHHHhhc
Q psy8155 569 Y---KLKKLDLQKE 579 (617)
Q Consensus 569 G---K~dr~~L~~~ 579 (617)
| |++|+.|++.
T Consensus 516 g~~~Ki~r~~L~~~ 529 (540)
T PRK06164 516 ANGAKIQKHRLREM 529 (540)
T ss_pred CccccccHHHHHHH
Confidence 8 9999998754
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=71.14 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=66.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEe--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAIL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.++.++......+...-...+|. .|..++++ .+....+.+++++++.+.++.|++|..+.+++++|+|+
T Consensus 423 G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~ 502 (524)
T PRK06188 423 GFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDFVDSLPLTA 502 (524)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCc
Confidence 788999999888887765322233332 23333333 44445667899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||++|++|.+.-+
T Consensus 503 ~gKi~r~~L~~~~~ 516 (524)
T PRK06188 503 LGKPDKKALRARYW 516 (524)
T ss_pred cccccHHHHHHHHH
Confidence 99999999987643
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=75.20 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHHHHcCccccc-------ccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 496 NGLRPQIWSEFVDRFRIAQIG-------EFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 496 e~l~~~~~~~~~~~~~~~~l~-------n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
+.++++ ++.....+|.+.=. ..|| |..++++......+.++++++|+++||. |+|..+.+++++|+|++
T Consensus 239 ~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g--e~v~A~Vv~~~~~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~ 314 (365)
T PRK09188 239 DNEAPA-IQAALKSDPAVSDVAIALFSLPAKG--VGLYAFVEAELPADEKSLRARLAGAKPP-KPPEHIQPVAALPRDAD 314 (365)
T ss_pred eeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC--eEEEEEEEECCCCCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCC
Confidence 456777 67666666643111 1233 3333333222356788999999999999 99999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||++|+.|+..
T Consensus 315 GKi~R~~Lr~~ 325 (365)
T PRK09188 315 GTVRDDILRLI 325 (365)
T ss_pred CCccHHHHHHH
Confidence 99999999864
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0043 Score=68.22 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.++.+++.....+...=...+|. .|.. ++++ .++...+.+++.++++++|+.|++|..+.+++++|+|.
T Consensus 425 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~ 504 (523)
T PRK08316 425 GENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIFVDELPRNP 504 (523)
T ss_pred CeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCCCC
Confidence 888888888888877765322223332 2223 3333 33444667889999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|.+.
T Consensus 505 ~gKi~r~~l~~~ 516 (523)
T PRK08316 505 SGKILKRELRER 516 (523)
T ss_pred ccceeHHHHHHH
Confidence 999999999754
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=72.33 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=66.9
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccccc------ceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATEG------MAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~------~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~ 567 (617)
||.+-.+.++...-++|.+.=.-.-++... |++++..+..++..+++.+|.+. +..|++|.++.+++++|+|+
T Consensus 444 GEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~ 523 (542)
T COG1021 444 GEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTA 523 (542)
T ss_pred cchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCcceeecccCCCcc
Confidence 888888888887766664311112222222 77788777778999999999887 99999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
-||||||+|++.
T Consensus 524 VGKIdKk~Lr~~ 535 (542)
T COG1021 524 VGKIDKKALRRR 535 (542)
T ss_pred cccccHHHHHHH
Confidence 999999999854
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.02 Score=70.49 Aligned_cols=97 Identities=9% Similarity=-0.012 Sum_probs=68.9
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|.+.. +-.+|.+.+..... ..-...++++++++...++-+.+. +.-+++.+..|+..+..++
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 672 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLL---WMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEP 672 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHH---HHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECCh
Confidence 4666776542 34578887755433 333456889999999888876554 3456778889999887765
Q ss_pred C--CChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 291 N--LRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 291 ~--~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
. ...+++...+++.++..+...+.....+.
T Consensus 673 ~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~ 704 (1296)
T PRK10252 673 EAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFV 704 (1296)
T ss_pred hccCCHHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 3 46788999999999999988777665443
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=74.20 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=65.1
Q ss_pred eccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 494 FGNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 494 ~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
.|+.+.+..++.....++...=...+|.. |. .++++ ..+.....+++++++.+.||.|++|..+.+++++|+|
T Consensus 262 ~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t 341 (358)
T PRK07824 262 GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRR 341 (358)
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCEEEEecCCCCC
Confidence 38889999999988877653222223311 22 33333 4445677889999999999999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
.+||++|++|.+.
T Consensus 342 ~~GKi~r~~L~~~ 354 (358)
T PRK07824 342 GIGKVDRRALVRR 354 (358)
T ss_pred CCccccHHHHHHH
Confidence 9999999999753
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00023 Score=76.84 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.+..++.....++...=.-.+|.. |. +++++......+.+++++++.++|+.|++|..+.+++++|+|++
T Consensus 354 G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~~ 433 (452)
T PRK07445 354 GENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQ 433 (452)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCCCHHHHHHHHHHhCCcccCCeEEEEecCCCCCCC
Confidence 8889999999988888754333344432 22 34444333456688999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||++|+.|++.
T Consensus 434 GKi~r~~L~~~ 444 (452)
T PRK07445 434 GKINRQQLQQI 444 (452)
T ss_pred cccCHHHHHHH
Confidence 99999998753
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00022 Score=79.12 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=65.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-.+|.. |. .++++ .++...+.++++++++++||.|++|..+.+++++|+|+
T Consensus 457 G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~ 536 (549)
T PRK07788 457 GENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVFLDELPRNP 536 (549)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeCCCCCCC
Confidence 8889999999988887753222222221 22 34444 45556788899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 537 ~GKi~r~~L~~~ 548 (549)
T PRK07788 537 TGKVLKRELREM 548 (549)
T ss_pred CcCEeHHHhhcc
Confidence 999999999753
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=3.1e-05 Score=86.93 Aligned_cols=35 Identities=6% Similarity=-0.070 Sum_probs=32.5
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 438 ~~~--~~TGD-lg~~~~d-G~l~~~GR~~d~ik~~G~~i 472 (600)
T PRK08279 438 DAW--FNTGD-LMRDDGF-GHAQFVDRLGDTFRWKGENV 472 (600)
T ss_pred Cce--Eeecc-eEEEcCC-ccEEEecccCCeEEECCccc
Confidence 456 78999 9999998 99999999999999999997
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.014 Score=70.78 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|.+.. +-.+|.+.+...+...++ ..+.+++|++...+|- +..+...++..+..|+..+..+
T Consensus 791 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~ 867 (1140)
T PRK06814 791 DPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAA---RIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYP 867 (1140)
T ss_pred CCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHH---hhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEec
Confidence 5677776552 245798888766555544 4467889999888874 3334456777788898887665
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
.....+.+...+++.++..+...+.....+.
T Consensus 868 ~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~ 898 (1140)
T PRK06814 868 SPLHYRIIPELIYDTNATILFGTDTFLNGYA 898 (1140)
T ss_pred CcccHHHHHHHHHhcCCEEEEecHHHHHHHH
Confidence 4445567778889999999988776655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0028 Score=76.94 Aligned_cols=98 Identities=5% Similarity=-0.031 Sum_probs=69.7
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEec
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpl 288 (617)
..++.+|.+.. +-.+|++.+...+..+. ...++.++|++...+|- +..+...+++.+..|+..+..
T Consensus 779 ~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~ 855 (1146)
T PRK08633 779 FKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS---DVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYH 855 (1146)
T ss_pred CCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHH---HhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEe
Confidence 34677777653 34578888876655543 34467889988777663 333444567778889888876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
......+++...+++.++..+...+.....+.
T Consensus 856 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 887 (1146)
T PRK08633 856 PDPTDALGIAKLVAKHRATILLGTPTFLRLYL 887 (1146)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEecHHHHHHHH
Confidence 65677889999999999999999887665443
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.025 Score=61.67 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=62.0
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccccc-----cceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATE-----GMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE-----~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|+.+.+..++.....++...=.-.+|... ..++++.. ..+..++++++.+.|+.|++|..+++++++|+|++|
T Consensus 391 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~--~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~G 468 (487)
T PRK07638 391 GINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG--SATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSG 468 (487)
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC--CCCHHHHHHHHHHHhhcccCCcEEEEecccCCCCcc
Confidence 77788888888877776532222333322 23333322 356789999999999999999999999999999999
Q ss_pred hhhhHHHhhc
Q psy8155 570 KLKKLDLQKE 579 (617)
Q Consensus 570 K~dr~~L~~~ 579 (617)
|++|++|++.
T Consensus 469 Kv~r~~L~~~ 478 (487)
T PRK07638 469 KIARMEAKSW 478 (487)
T ss_pred cccHHHHHHH
Confidence 9999999754
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0004 Score=77.36 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=66.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++......+...=.-.+|.. |. .++++ .++...+.++++++++++||+|++|..+.+++++|+|+
T Consensus 463 G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~ 542 (562)
T PRK05677 463 GFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTN 542 (562)
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEEeccCCCCC
Confidence 8889999999888777653222333322 22 33333 44556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||++|++|++..+
T Consensus 543 sGKi~r~~L~~~~~ 556 (562)
T PRK05677 543 VGKILRRELRDEEL 556 (562)
T ss_pred cccccHHHHHHHHH
Confidence 99999999987554
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00067 Score=75.18 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=68.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc------ccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT------EGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T------E~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+++..++.....++...-.-.+|-. +..++++ ..+...+..++++++.++|+.|++|..+.+++++|+|.
T Consensus 430 G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~ 509 (542)
T PRK06155 430 GENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTE 509 (542)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEEeccCCCCc
Confidence 8889999998888877754322333322 2233333 55566788899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||++|++|+++.|
T Consensus 510 ~GKi~r~~l~~~~~ 523 (542)
T PRK06155 510 NGKVQKFVLREQGV 523 (542)
T ss_pred ccceeHHHHHhhcc
Confidence 99999999998877
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00061 Score=74.04 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|+.+.+..++......+...=.-.+|. .|..++++......+..++.+++.+.|++|++|..+.+++++|+|.+|
T Consensus 381 G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~G 460 (471)
T PRK07787 381 GYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMG 460 (471)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCCCc
Confidence 777888888888777664322223333 233444443344567889999999999999999999999999999999
Q ss_pred hhhhHHHhhcC
Q psy8155 570 KLKKLDLQKEG 580 (617)
Q Consensus 570 K~dr~~L~~~g 580 (617)
|++|++|.++|
T Consensus 461 Ki~r~~L~~~~ 471 (471)
T PRK07787 461 KVLKKQLLSEG 471 (471)
T ss_pred cccHHHhccCC
Confidence 99999998875
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00023 Score=55.33 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=29.2
Q ss_pred CHHHHHHHHhhcCCCCCcC--cEEEEeec-ccCCccch
Q psy8155 536 DVSAVSEGIKKALPSYARP--LFIRCLRE-VEMTGTYK 570 (617)
Q Consensus 536 ~~~~l~~~l~~~Lp~~~~P--~~~~~~~~-lP~t~~GK 570 (617)
+.++++++++++||+||+| ..++.+++ ||+|++||
T Consensus 36 ~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~GK 73 (73)
T PF13193_consen 36 DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPSGK 73 (73)
T ss_dssp HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred eecccccchhhhCCCcceeeEEEEccccCcCCCCCCCC
Confidence 4589999999999999999 66777777 99999998
|
... |
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00081 Score=74.40 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=65.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++......+...-.-.+|.. |. .++++ .++...+.+++++++.++||.|++|..+.+++++|+|+
T Consensus 446 G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~ 525 (537)
T PRK13382 446 GENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLANYKVPRDIVVLDELPRGA 525 (537)
T ss_pred CEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEEeccCCCCC
Confidence 8889999999988887754333333332 32 33444 44445677899999999999999999999999999999
Q ss_pred cchhhhHHHhh
Q psy8155 568 TYKLKKLDLQK 578 (617)
Q Consensus 568 ~GK~dr~~L~~ 578 (617)
+||++|++|++
T Consensus 526 ~gK~~r~~L~~ 536 (537)
T PRK13382 526 TGKILRRELQA 536 (537)
T ss_pred CCCCcHHhhCC
Confidence 99999999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00075 Score=74.81 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCC--CCCCHHHHHHHHhhcCCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DIN--KSLDVSAVSEGIKKALPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~--~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~ 565 (617)
|+.+.+..++......+...-.-.+|. .|.. ++++ .++ ...+.+++++++.++|+.|++|..+++++++|+
T Consensus 446 G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~ 525 (546)
T PRK08314 446 GFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFVDSLPK 525 (546)
T ss_pred CEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEecCCCC
Confidence 888998888888877665322223332 2333 3333 222 234568899999999999999999999999999
Q ss_pred CccchhhhHHHhhcCC
Q psy8155 566 TGTYKLKKLDLQKEGF 581 (617)
Q Consensus 566 t~~GK~dr~~L~~~g~ 581 (617)
|.+||++|+.|.+.+|
T Consensus 526 t~~GKv~r~~L~~~~~ 541 (546)
T PRK08314 526 SGSGKILWRQLQEQEK 541 (546)
T ss_pred CCccceeHHHHHHHHh
Confidence 9999999999998877
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.017 Score=60.78 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=55.8
Q ss_pred ccCCCHHHHHHHHHHcCccc--ccccccccccceEEe-CCCCCCC--HHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQ--IGEFYGATEGMAAIL-DINKSLD--VSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~--l~n~YG~TE~~~~v~-~~~~~~~--~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|+.+++..+++....+|... .+-.+| .+..++++ .++...+ .+++++++.++||+|++|..+.+++++|+|++|
T Consensus 305 G~~V~p~eIE~~l~~~p~V~~~~v~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~G 383 (386)
T TIGR02372 305 GVNVSPGHVRDILERNPRVRAAAVRLDG-RRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDRFRFGTELPRTGAG 383 (386)
T ss_pred CEEEcHHHHHHHHHcCCCceEEEEEcCC-ceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCC
Confidence 88899999999888876531 111222 23344444 3222222 458899999999999999999999999999999
Q ss_pred hhh
Q psy8155 570 KLK 572 (617)
Q Consensus 570 K~d 572 (617)
|++
T Consensus 384 Ki~ 386 (386)
T TIGR02372 384 KLA 386 (386)
T ss_pred CcC
Confidence 984
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00097 Score=76.42 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=60.9
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDV---SAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++...-.-.+|.. |. .++++ ..+...+. .++++++.++||.||+|..+.+++++|
T Consensus 395 G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP 474 (705)
T PRK06060 395 GVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLP 474 (705)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCC
Confidence 8888898888877766643212222221 22 34444 23323333 478889999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|.+||+||++|++.
T Consensus 475 ~t~~GKidr~~L~~~ 489 (705)
T PRK06060 475 RTPNGKLVRGALRKQ 489 (705)
T ss_pred CCcchhhHHHHHHhh
Confidence 999999999999864
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0012 Score=72.79 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...-...+|. .|.. ++++ .++...+.+++++++.+.||.|++|..+++++++|+|.
T Consensus 424 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~ 503 (528)
T PRK07470 424 GSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSG 503 (528)
T ss_pred CEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEEeccCCCCC
Confidence 888999888888877765322333332 2333 3333 44445778899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|.+.
T Consensus 504 ~GKi~r~~l~~~ 515 (528)
T PRK07470 504 YGKITKKMVREE 515 (528)
T ss_pred cccccHHHHHHH
Confidence 999999998754
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=73.30 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.++.++......+...-.-.||-. |. .++++ .+....+.+++.+++.++||.|++|..+.+++++|+|.
T Consensus 438 G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~ 517 (534)
T PRK05852 438 GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTA 517 (534)
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEhhhcCCCC
Confidence 7788899888888777653222223321 22 33333 44455778899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|++.
T Consensus 518 ~GKi~r~~L~~~ 529 (534)
T PRK05852 518 KGSLDRRAVAEQ 529 (534)
T ss_pred CccccHHHHHHH
Confidence 999999999864
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0013 Score=72.46 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=65.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccc-eEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGM-AAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.++.++.....++...-...+|.. |.. ++++ .++...+.++++++++++||.|++|..+++++++|+|+
T Consensus 438 G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~ 517 (533)
T PRK07798 438 GEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWFVDEVQRSP 517 (533)
T ss_pred CEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEEcccCCCCC
Confidence 8889998888888777653222334422 222 3333 44555688999999999999999999999999999999
Q ss_pred cchhhhHHHhhcC
Q psy8155 568 TYKLKKLDLQKEG 580 (617)
Q Consensus 568 ~GK~dr~~L~~~g 580 (617)
+||++|+.|++..
T Consensus 518 ~GK~~~~~~~~~~ 530 (533)
T PRK07798 518 AGKADYRWAKEQA 530 (533)
T ss_pred cchhhHHHHhhhh
Confidence 9999999998753
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=71.88 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=65.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccc-------cccccccceEEeCCCCCCCHHHHHHHHhhc--CCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGE-------FYGATEGMAAILDINKSLDVSAVSEGIKKA--LPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n-------~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~--Lp~~~~P~~~~~~~~lP~ 565 (617)
|+.+.+..++.....++...=.- .+|.....+.+..++...+.+++++++..+ ||+|++|..+.+++++|+
T Consensus 411 G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~ 490 (529)
T PRK07867 411 GENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPR 490 (529)
T ss_pred CEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEEeeccCC
Confidence 88899998888888776432211 233222223333556667889999999875 999999999999999999
Q ss_pred CccchhhhHHHhhcC
Q psy8155 566 TGTYKLKKLDLQKEG 580 (617)
Q Consensus 566 t~~GK~dr~~L~~~g 580 (617)
|++||++|+.|++..
T Consensus 491 t~~GKv~r~~L~~~~ 505 (529)
T PRK07867 491 TATFKVLKRQLSAEG 505 (529)
T ss_pred CCCcceeHHHHHHhc
Confidence 999999999998865
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=73.87 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=67.9
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDV---SAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|+.+.+..++.....+|.+.=.-..|. .|. .++|+ .++...+. ++++++++++|++|++|..+.+++++|
T Consensus 529 G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP 608 (652)
T TIGR01217 529 GVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIP 608 (652)
T ss_pred CEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC
Confidence 888999999998888775311112221 133 34444 44433443 579999999999999999999999999
Q ss_pred CCccchhhhHHHhhcCCCCCccCCeeEEEe
Q psy8155 565 MTGTYKLKKLDLQKEGFDPNVIQDRLYYLS 594 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d 594 (617)
+|.+||++|+.|++. +....-|| ...+.
T Consensus 609 ~T~sGKi~r~~Lr~~-~~~~~~~~-~~~~~ 636 (652)
T TIGR01217 609 HTLTGKRVEVAVKRV-LQGTPVDN-PGAID 636 (652)
T ss_pred CCCCccChHHHHHHH-HcCCCCCC-ccccc
Confidence 999999999999865 31112355 54444
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=73.31 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=65.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCC-CCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALP-SYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp-~~~~P~~~~~~~~lP~t 566 (617)
|..+.+..++.....++...-.-.+|. .|. +++++ .++...+.+++++++.++++ .+++|..+.+++++|+|
T Consensus 475 G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t 554 (632)
T PRK07529 475 GHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRILDALPKT 554 (632)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEEecCCCCC
Confidence 888999999988887775433333332 233 33444 55566778899999999997 57999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|++|++.
T Consensus 555 ~~GKi~r~~Lr~~ 567 (632)
T PRK07529 555 AVGKIFKPALRRD 567 (632)
T ss_pred CCCcccHHHHHHH
Confidence 9999999998755
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0017 Score=73.86 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=62.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDV---SAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++.+.=.-.+|.. |. .++|+ .++...+. ++++++++++|++|++|..+++++++|
T Consensus 528 G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP 607 (655)
T PRK03584 528 GVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIP 607 (655)
T ss_pred cEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCC
Confidence 7788899888888877653212223321 22 44444 33333333 578999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|.+||++|+.|++.
T Consensus 608 ~t~sGKi~r~~lr~~ 622 (655)
T PRK03584 608 RTLSGKKVELPVKKL 622 (655)
T ss_pred CCCCccchHHHHHHH
Confidence 999999999999864
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0014 Score=73.10 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=62.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccccc-----c-ceEEe-CCCC---CCCHHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATE-----G-MAAIL-DINK---SLDVSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE-----~-~~~v~-~~~~---~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|+.+.+..++.....++...=.-.+|-.+ . .++++ .++. ....+++++++.++||.|++|..+.+++++|
T Consensus 460 G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P 539 (576)
T PRK05620 460 GEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEID 539 (576)
T ss_pred CEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCC
Confidence 77888888888877776532222333221 1 33333 3332 2356889999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|.+||++|+.|++.
T Consensus 540 ~t~~GKv~r~~L~~~ 554 (576)
T PRK05620 540 KTSVGKFDKKDLRQH 554 (576)
T ss_pred CCCcccCcHHHHHHH
Confidence 999999999999754
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0018 Score=71.81 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=66.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc------ccceEEe-CCCCCCCHHHHHHHHhhc--CCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT------EGMAAIL-DINKSLDVSAVSEGIKKA--LPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T------E~~~~v~-~~~~~~~~~~l~~~l~~~--Lp~~~~P~~~~~~~~lP~ 565 (617)
|..+.+..++......+...=.-.+|.. +..++++ .++...+.+++++++..+ ||.|++|..+.+++++|+
T Consensus 410 G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~ 489 (540)
T PRK13388 410 GENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPS 489 (540)
T ss_pred CEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEEeccCCC
Confidence 7889999999888777643111223321 1133333 555567788999999864 999999999999999999
Q ss_pred CccchhhhHHHhhcCC
Q psy8155 566 TGTYKLKKLDLQKEGF 581 (617)
Q Consensus 566 t~~GK~dr~~L~~~g~ 581 (617)
|.+||++|++|++..+
T Consensus 490 t~~GKv~R~~L~~~~~ 505 (540)
T PRK13388 490 TATNKVLKRELIAQGW 505 (540)
T ss_pred CCcceeeHHhHHHhcc
Confidence 9999999999999876
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=73.32 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=69.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++...=.-.+|-. |. +++++ .++...+ .++|++++.++|+.|++|..+.+++++|
T Consensus 513 G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 592 (637)
T PRK00174 513 GHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLP 592 (637)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCC
Confidence 8889999999888877653222233321 22 34444 3333333 4689999999999999999999999999
Q ss_pred CCccchhhhHHHhhcCCCCCccCCeeEEEeC
Q psy8155 565 MTGTYKLKKLDLQKEGFDPNVIQDRLYYLSS 595 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~ 595 (617)
+|++||++|+.|++..-....-|| ...+.+
T Consensus 593 ~t~~GKi~R~~L~~~~~~~~~~~~-~~~~~~ 622 (637)
T PRK00174 593 KTRSGKIMRRILRKIAEGEEILGD-TSTLAD 622 (637)
T ss_pred CCCCcchHHHHHHHHHcCCCCCCC-cccccC
Confidence 999999999999865221113466 555544
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=70.75 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.++.++.....++...=...+|. .|. .++++ .+....+..++++++.++|+.|++|..+.+++++|+|+
T Consensus 403 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~ 482 (497)
T PRK06145 403 GENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNP 482 (497)
T ss_pred CeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEEeccCCCCC
Confidence 888999988888887765322222222 232 33333 44455678899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|.++
T Consensus 483 ~GKi~r~~l~~~ 494 (497)
T PRK06145 483 SGKVLKRVLRDE 494 (497)
T ss_pred cccccHHHHHHH
Confidence 999999999864
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0017 Score=71.85 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=63.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...-.-.+|. .|. .++++ .++...+.+++++++.++|+.|++|..+.+++++|+|+
T Consensus 442 G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~ 521 (537)
T PLN02246 442 GFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAP 521 (537)
T ss_pred CEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEEeccCCCCC
Confidence 788888888887777764311112221 122 33443 34445677899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 522 ~GKi~r~~L~~~ 533 (537)
T PLN02246 522 SGKILRKDLRAK 533 (537)
T ss_pred cchhhHHHHHHH
Confidence 999999999764
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0016 Score=72.40 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=64.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceE-EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAA-ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~-v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|..+.+..++.....++...=...+|. -|...+ ++..+...+.+++++++.++++.|++|..+.+++++|+|.+
T Consensus 467 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~ 546 (560)
T PRK08751 467 GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNV 546 (560)
T ss_pred CEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHHHHHHHHhhhhccCCeEEEEhhhCCCCcc
Confidence 778888888888777764321222332 233333 33445556788999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||++|++|++.
T Consensus 547 gKv~r~~L~~~ 557 (560)
T PRK08751 547 GKILRRELRDA 557 (560)
T ss_pred ccccHHHHHHh
Confidence 99999999865
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=71.14 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=64.1
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-.+|.. |. +++++ .++...+.++++++++++|++|++|..+.+++++|+|+
T Consensus 460 G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~ 539 (560)
T PLN02574 460 GFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVFVQSIPKSP 539 (560)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEEeeccCCCC
Confidence 8888888888877766643111122221 22 34444 44555677899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|++.
T Consensus 540 ~GKi~r~~L~~~ 551 (560)
T PLN02574 540 AGKILRRELKRS 551 (560)
T ss_pred cchhhHHHHHHH
Confidence 999999999865
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0021 Score=71.12 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc------ccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT------EGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T------E~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++...+..+...=.-.+|.. +..++++ .++...+.+++++++.++|++|++|..+.+++++|+|.
T Consensus 439 G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~ 518 (539)
T PRK07008 439 GEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTA 518 (539)
T ss_pred CeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEEecCCCCCC
Confidence 7888888888888777653222223321 2233343 44455678899999999999999999999999999999
Q ss_pred cchhhhHHHhh
Q psy8155 568 TYKLKKLDLQK 578 (617)
Q Consensus 568 ~GK~dr~~L~~ 578 (617)
+||++|++|++
T Consensus 519 sgKi~r~~l~~ 529 (539)
T PRK07008 519 TGKLQKLKLRE 529 (539)
T ss_pred ccceeHHHHHH
Confidence 99999999975
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0023 Score=73.56 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=60.7
Q ss_pred ccCCCHHHHHHHHHHcC-ccccccccc-c----cccceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFR-IAQIGEFYG-A----TEGMAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~-~~~l~n~YG-~----TE~~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+++..++......+ ..... ..| + .|..++++. +...+.++++++++++ ||.||+|..+.+++++|+|+
T Consensus 621 G~~V~p~eIE~~l~~~~~~~~~a-vv~~~~~~~ge~~v~~~~-~~~~~~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~ 698 (718)
T PRK08043 621 GEMVSLEMVEQLALGVSPDKQHA-TAIKSDASKGEALVLFTT-DSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLG 698 (718)
T ss_pred cEEcCHHHHHHHHHhCCccceEE-EEEccCCCCCceEEEEEc-CcccCHHHHHHHHHhcCCCcccCCceEEEecccCcCC
Confidence 88899999988665543 21111 111 1 233333332 3456778899999987 99999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||+||++|++.
T Consensus 699 ~GKi~r~~L~~~ 710 (718)
T PRK08043 699 SGKPDFVTLKSM 710 (718)
T ss_pred CCCcCHHHHHHH
Confidence 999999999754
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.002 Score=71.69 Aligned_cols=87 Identities=18% Similarity=0.112 Sum_probs=65.4
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++.....++...-.-.+|. .|. .++++ .++...+.+++++++.+.||.|++|..+.+++++|+|.
T Consensus 461 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~ 540 (563)
T PRK06710 461 GFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEFRDELPKTT 540 (563)
T ss_pred CEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEEcccCCCCc
Confidence 777888888888877765322222221 233 34444 44455678899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||++|+.|.+..-
T Consensus 541 ~GKi~r~~L~~~~~ 554 (563)
T PRK06710 541 VGKILRRVLIEEEK 554 (563)
T ss_pred cchhhHHHHHHHHh
Confidence 99999999987653
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0024 Score=72.60 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=68.6
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDV---SAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++.+.=.-.+|-. |. .++|+ .++...+. ++|+++++++|+.|++|..+.+++++|
T Consensus 543 G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP 622 (666)
T PLN02654 543 GHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLP 622 (666)
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCC
Confidence 8889999999988887753111122211 22 34444 44433333 378889999999999999999999999
Q ss_pred CCccchhhhHHHhhcCCCC-CccCCeeEEEeC
Q psy8155 565 MTGTYKLKKLDLQKEGFDP-NVIQDRLYYLSS 595 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~~~-~~TGD~lg~~d~ 595 (617)
+|.+||++|+.|++..-.. ..-|| ...++.
T Consensus 623 ~T~sGKi~r~~l~~~~~~~~~~~~~-~~~~~~ 653 (666)
T PLN02654 623 KTRSGKIMRRILRKIASRQLDELGD-TSTLAD 653 (666)
T ss_pred CCCCcCchHHHHHHHHcCCCCCCCC-cccccC
Confidence 9999999999998652111 13467 655543
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0027 Score=70.30 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc------ccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG------ATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG------~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-..| .-+..++++ .++...+.+++.+++.++++.|++|..+.+++++|+|.
T Consensus 440 G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~ 519 (542)
T PRK06018 440 GEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTA 519 (542)
T ss_pred CEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEEeccCCCCC
Confidence 88898888888887766431111122 112233333 55556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhcC
Q psy8155 568 TYKLKKLDLQKEG 580 (617)
Q Consensus 568 ~GK~dr~~L~~~g 580 (617)
+||++|++|++.-
T Consensus 520 ~GKi~r~~L~~~~ 532 (542)
T PRK06018 520 TGKILKTALREQF 532 (542)
T ss_pred cchhhHHHHHHHH
Confidence 9999999998753
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0023 Score=71.55 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=61.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCC----------CHHHHHHHHhhcCCCCCcCcEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSL----------DVSAVSEGIKKALPSYARPLFI 557 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~----------~~~~l~~~l~~~Lp~~~~P~~~ 557 (617)
|+.+.+..++...+.++...=.-..|. .|. .++++ .++... +..++++++.++||.|++|..+
T Consensus 450 G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i 529 (579)
T PLN03102 450 GENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKV 529 (579)
T ss_pred CEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEE
Confidence 888999989988887764311112221 133 33444 222221 3567999999999999999999
Q ss_pred EEeecccCCccchhhhHHHhhc
Q psy8155 558 RCLREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 558 ~~~~~lP~t~~GK~dr~~L~~~ 579 (617)
++++++|+|++||++|++|++.
T Consensus 530 ~~~~~~P~t~~gKi~r~~L~~~ 551 (579)
T PLN03102 530 VFLQELPKNGNGKILKPKLRDI 551 (579)
T ss_pred EEcccCCCCCcccccHHHHHHH
Confidence 9999999999999999999865
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0022 Score=69.36 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=62.9
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|..+.+..++......+...=.-.+|. .|..++++......+.++++++++++||.|++|..+..++++|+|.+|
T Consensus 361 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~g 440 (458)
T PRK09029 361 GEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGI 440 (458)
T ss_pred CEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeEEEEecccccCcCC
Confidence 778888888887776654311111221 233444443334467889999999999999999999999999999999
Q ss_pred hhhhHHHhhc
Q psy8155 570 KLKKLDLQKE 579 (617)
Q Consensus 570 K~dr~~L~~~ 579 (617)
|++|+.|++.
T Consensus 441 Ki~r~~L~~~ 450 (458)
T PRK09029 441 KISRQALKEW 450 (458)
T ss_pred CcCHHHHHHH
Confidence 9999999754
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0021 Score=72.55 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCC--------CCHHHHHHHHhhcCCCCCcCcEEEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKS--------LDVSAVSEGIKKALPSYARPLFIRC 559 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~--------~~~~~l~~~l~~~Lp~~~~P~~~~~ 559 (617)
|..+.+..++.....++...=.-.+|- -|. .++++ .++.. ...++|++++.++||+|++|..+.+
T Consensus 502 G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~ 581 (628)
T TIGR02316 502 GHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYF 581 (628)
T ss_pred CEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEE
Confidence 788999999988887765311222221 122 34444 32221 1246799999999999999999999
Q ss_pred eecccCCccchhhhHHHhhc--CCCCCccCCeeEEEeC
Q psy8155 560 LREVEMTGTYKLKKLDLQKE--GFDPNVIQDRLYYLSS 595 (617)
Q Consensus 560 ~~~lP~t~~GK~dr~~L~~~--g~~~~~TGD~lg~~d~ 595 (617)
++++|+|.+||++|+.|++. +. .-|| +-.+..
T Consensus 582 v~~lP~t~sGKi~r~~L~~~~~~~---~~~~-~~~~~~ 615 (628)
T TIGR02316 582 VAALPKTRSGKLLRRSIQALAEGR---DPGD-LTTIDD 615 (628)
T ss_pred cCCCCCCCchHHHHHHHHHHHcCC---CCCC-cccccC
Confidence 99999999999999999854 33 2467 555543
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0028 Score=69.09 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=64.1
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++.....++...=...+|.. |. .++++ .++...+..++.++++++++.|++|..+.+++++|+|+
T Consensus 391 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~ 470 (488)
T PRK09088 391 GENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTA 470 (488)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEEcccCCCCC
Confidence 7889999999888877653212223221 32 23333 44444578899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|.+.
T Consensus 471 ~gKi~r~~l~~~ 482 (488)
T PRK09088 471 SGKLQKARLRDA 482 (488)
T ss_pred CCceeHHHHHHH
Confidence 999999999764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0028 Score=71.56 Aligned_cols=85 Identities=16% Similarity=0.127 Sum_probs=62.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++...=.-..|- .|. .++++ .++...+ .++++++++++|+.|++|..+.+++++|
T Consensus 505 G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP 584 (625)
T TIGR02188 505 GHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLP 584 (625)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCC
Confidence 888999999998887775311122221 133 33343 3333333 3679999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|.+||++|+.|++.
T Consensus 585 ~t~sGKi~r~~l~~~ 599 (625)
T TIGR02188 585 KTRSGKIMRRLLRKI 599 (625)
T ss_pred CCCCccchHHHHHHH
Confidence 999999999999865
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=69.61 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=59.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+++..++.....++...=.-.+|- -|.. ++++ .++...+ .+++++++.++||.||+|..+++++++|
T Consensus 409 G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP 488 (501)
T PRK13390 409 GVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELP 488 (501)
T ss_pred CeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCC
Confidence 888999988888777664321222221 1222 3333 3322222 4578999999999999999999999999
Q ss_pred CCccchhhhHHHh
Q psy8155 565 MTGTYKLKKLDLQ 577 (617)
Q Consensus 565 ~t~~GK~dr~~L~ 577 (617)
+|++||++|++|+
T Consensus 489 ~t~~GKi~r~~L~ 501 (501)
T PRK13390 489 RTPTGKLVKGLLR 501 (501)
T ss_pred CCCccceehhhcC
Confidence 9999999999874
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00036 Score=72.13 Aligned_cols=32 Identities=6% Similarity=-0.127 Sum_probs=27.2
Q ss_pred HHHhhcCCCCCccCCeeEEE-eCCCceeeCCHHHHHHHhcCC
Q psy8155 574 LDLQKEGFDPNVIQDRLYYL-SSKGVYEELTPEVYKDLVQGN 614 (617)
Q Consensus 574 ~~L~~~g~~~~~TGD~lg~~-d~d~G~l~i~GR~~d~I~~~G 614 (617)
..+..+|| ++||| +||+ |+| |+|+|+||.| ||
T Consensus 203 ~~~~~dgW--~~TGD-lg~~~d~d-G~l~~~gR~~-----~G 235 (365)
T PRK09188 203 KSLPSRIW--LATGK-KVYNFITR-GLFSWSDGEG-----TG 235 (365)
T ss_pred cccccCcE--EeCCC-EEEEEcCC-CeEEEEecCc-----CC
Confidence 33557899 66999 9999 687 9999999998 88
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=69.98 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=67.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++.....++...=.-.+|. .|. .+++. .++...+.+++++++.+.|++|++|..+.+++++|+|.
T Consensus 409 G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~ 488 (509)
T PRK12406 409 GVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPRED 488 (509)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeccCCCCC
Confidence 888888888887777664311112221 122 33333 33344678899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCCCCCccCC
Q psy8155 568 TYKLKKLDLQKEGFDPNVIQD 588 (617)
Q Consensus 568 ~GK~dr~~L~~~g~~~~~TGD 588 (617)
+||++|+.|++..+ -+||-
T Consensus 489 ~GK~~r~~L~~~~~--~~~~~ 507 (509)
T PRK12406 489 SGKIFKRRLRDPYW--ANAGR 507 (509)
T ss_pred ccchhHHHHHHHHH--hhccc
Confidence 99999999998777 33663
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0032 Score=70.31 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=65.6
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.++.+++....++...-.-.+|.. |. .++++ .++...+.+++++++.++|+.|++|..+++++++|+|.
T Consensus 475 G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~ 554 (573)
T PRK05605 475 GFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHVDELPRDQ 554 (573)
T ss_pred CEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEeccCCCCC
Confidence 8889888888888777654333344422 33 33333 44556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 555 ~GKi~r~~L~~~ 566 (573)
T PRK05605 555 LGKVRRREVREE 566 (573)
T ss_pred cccccHHHHHHH
Confidence 999999999754
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0032 Score=69.62 Aligned_cols=84 Identities=12% Similarity=0.206 Sum_probs=63.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc------ccceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT------EGMAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T------E~~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=....|.. +.+++++... ..+..++++++.+. ||+|++|..+.+++++|+|+
T Consensus 439 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~-~~~~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~ 517 (536)
T PRK10946 439 GEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE-PLKAVQLRRFLREQGIAEFKLPDRVECVDSLPLTA 517 (536)
T ss_pred CEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCC-CCCHHHHHHHHHhCCccccccCcEEEEeccCCCCC
Confidence 8888888888888777653222222222 2344555332 37788999999886 99999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 518 ~GKv~r~~L~~~ 529 (536)
T PRK10946 518 VGKVDKKQLRQW 529 (536)
T ss_pred CCcccHHHHHHH
Confidence 999999998754
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0036 Score=68.56 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=66.1
Q ss_pred CCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCCeEEecCCC
Q psy8155 222 PNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHN 291 (617)
Q Consensus 222 p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~-~iva~lA~~~aG~~~vpldp~ 291 (617)
|+.+|++.. +-.+|++.+...+... ....++.++|++...++-+-. .+..+++.+..|+..+..+..
T Consensus 118 ~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~ 194 (499)
T PLN03051 118 VESVTNILFSSGTTGEPKAIPWTHLSPLRCASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGA 194 (499)
T ss_pred ccceEEEEeCCCCCCCCceEEEccchHHHHHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCC
Confidence 466776652 3457887765433222 234578889988776664321 134577888999998887655
Q ss_pred CChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 292 ~p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
...+++...+++.++.++..-+.....+.
T Consensus 195 ~~~~~~~~~i~~~~vt~~~~vP~~~~~l~ 223 (499)
T PLN03051 195 PLGRGFGKFVQDAGVTVLGLVPSIVKAWR 223 (499)
T ss_pred CCcHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 56688999999999999998887766543
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=69.74 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=62.3
Q ss_pred ccCCCHHHHHHHHHHcCccc---cc----ccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQ---IG----EFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~---l~----n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|..+.+..++.....++... ++ +.+|... .++++ .++...+.++++++++++|+.|++|..+.+++++|+|
T Consensus 447 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~-~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t 525 (546)
T PLN02330 447 GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIP-AACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKS 525 (546)
T ss_pred CEEECHHHHHHHHHhCCchheEEEEeccccccCcee-EEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEEeccCCCC
Confidence 77788888888777665431 11 1223222 23333 4444566788999999999999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|+.|++.
T Consensus 526 ~~GK~~r~~L~~~ 538 (546)
T PLN02330 526 LSGKIMRRLLKEK 538 (546)
T ss_pred CCcceeHHHHHHH
Confidence 9999999999764
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0039 Score=70.45 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=68.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCC--------CHHHHHHHHhhcCCCCCcCcEEEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSL--------DVSAVSEGIKKALPSYARPLFIRC 559 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~--------~~~~l~~~l~~~Lp~~~~P~~~~~ 559 (617)
|..+.+..++.....++...=.-.+|-. |. .++++ .++... ..+++++++.++|+.|++|..+.+
T Consensus 503 G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 582 (629)
T PRK10524 503 GHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWF 582 (629)
T ss_pred CEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEE
Confidence 8889999999888877753222223211 22 34444 322222 145789999999999999999999
Q ss_pred eecccCCccchhhhHHHhhcCCCCCccCCeeEEEeC
Q psy8155 560 LREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSS 595 (617)
Q Consensus 560 ~~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~ 595 (617)
++++|+|++||++|+.|++.-= ....|| +-.++.
T Consensus 583 v~~lP~T~sGKi~R~~L~~~~~-~~~~~~-~~~~~~ 616 (629)
T PRK10524 583 VSALPKTRSGKLLRRAIQAIAE-GRDPGD-LTTIED 616 (629)
T ss_pred cCCCCCCCCcchHHHHHHHHHc-CCCCCC-cccccC
Confidence 9999999999999999986411 123677 655553
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0031 Score=70.15 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=64.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+++..+++....++...-.-.+|. .|.. ++++..+...+.++++.++.+.|+.|++|..+.+++++|+|++
T Consensus 465 G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~ 544 (557)
T PRK07059 465 GFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNV 544 (557)
T ss_pred CEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCcc
Confidence 888999988888877765322223332 2333 3334444456778999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||++|+.|+++
T Consensus 545 GK~~r~~L~~~ 555 (557)
T PRK07059 545 GKILRRELRDG 555 (557)
T ss_pred cceeHHHHHhh
Confidence 99999999754
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0038 Score=68.31 Aligned_cols=85 Identities=20% Similarity=0.249 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc-----cccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG-----ATEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG-----~TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..++.....++...-...+| ..|. .++++ .++...+.+++++++.++|+.|++|..+++++++|+|.
T Consensus 407 G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~ 486 (504)
T PRK07514 407 GYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKGRLARFKQPKRVFFVDELPRNT 486 (504)
T ss_pred CeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEEeccCCCCC
Confidence 88888888888887776421112222 1232 33333 44445678899999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|.+.
T Consensus 487 ~gK~~r~~l~~~ 498 (504)
T PRK07514 487 MGKVQKNLLREQ 498 (504)
T ss_pred CcceeHHHHHHH
Confidence 999999999765
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0034 Score=69.84 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=63.8
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccce-EEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMA-AILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~-~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.+..++......+...=.-.+|.. |... +++......+.+++++++.++|+.|++|..+.+++++|+|++
T Consensus 471 G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~~~~~P~t~~ 550 (562)
T PRK12492 471 GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVLRDSLPMTPV 550 (562)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcEEEEeccCCCCCC
Confidence 8889888888887776643222233322 3333 333333446778999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||++|++|++.
T Consensus 551 GK~~r~~L~~~ 561 (562)
T PRK12492 551 GKILRRELRDI 561 (562)
T ss_pred CceeHHHHHhh
Confidence 99999999753
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.003 Score=69.11 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=62.3
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc---cc---cc-ceEEeCCCCC-C---C-HHHHHHHHhhcCCCCCcCcEEEEeec
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG---AT---EG-MAAILDINKS-L---D-VSAVSEGIKKALPSYARPLFIRCLRE 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG---~T---E~-~~~v~~~~~~-~---~-~~~l~~~l~~~Lp~~~~P~~~~~~~~ 562 (617)
|+.+.+..++.....++...-...+| .. |. .++++..... . . ..++++.+.+.||+|++|..++++++
T Consensus 403 G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~ 482 (502)
T TIGR01734 403 GYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQ 482 (502)
T ss_pred cEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccc
Confidence 88899999999888877543333333 12 22 3444422211 1 1 26789999999999999999999999
Q ss_pred ccCCccchhhhHHHhhc
Q psy8155 563 VEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 563 lP~t~~GK~dr~~L~~~ 579 (617)
+|+|++||++|++|.++
T Consensus 483 lP~t~~gKv~r~~l~~~ 499 (502)
T TIGR01734 483 LPLTANGKIDRKALAEE 499 (502)
T ss_pred cCCCCCCcccHHHHHHh
Confidence 99999999999999864
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0045 Score=68.55 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCC-CCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DIN-KSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~-~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++......+...-.-.+|. .|. .++++ ... ......++++++.++++.|++|..+.+++++|+|
T Consensus 429 G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t 508 (542)
T PRK07786 429 GENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRN 508 (542)
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEEeccCCCC
Confidence 777888888888777765433333332 122 33333 322 2356789999999999999999999999999999
Q ss_pred ccchhhhHHHhhcCCCCCccCC
Q psy8155 567 GTYKLKKLDLQKEGFDPNVIQD 588 (617)
Q Consensus 567 ~~GK~dr~~L~~~g~~~~~TGD 588 (617)
++||++|++|.+. |.-..++|
T Consensus 509 ~~GKv~r~~L~~~-~~~~~~~~ 529 (542)
T PRK07786 509 PAGKVLKTELRER-YGACVNVE 529 (542)
T ss_pred CcccccHHHHHHH-HHhhhchh
Confidence 9999999999765 22223566
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0042 Score=70.37 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=69.2
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CC---CCCCCH----HHHHHHHhhcCCCCCcCcEEEEe
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DI---NKSLDV----SAVSEGIKKALPSYARPLFIRCL 560 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~---~~~~~~----~~l~~~l~~~Lp~~~~P~~~~~~ 560 (617)
|+.+.+..++.....+|.+.=.-..|-. |. .++|+ .+ +...+. ++|+++++++|++|++|..++++
T Consensus 522 G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v 601 (647)
T PTZ00237 522 GNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIV 601 (647)
T ss_pred CEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEc
Confidence 8889999999988887753222222222 22 44444 22 222333 45678889999999999999999
Q ss_pred ecccCCccchhhhHHHhhcCCCCCccCCeeEEEeCC
Q psy8155 561 REVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSK 596 (617)
Q Consensus 561 ~~lP~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d~d 596 (617)
+++|+|.+||++|+.|++. +.....|| +-.+++.
T Consensus 602 ~~lP~T~sGKi~R~~Lr~~-~~~~~~~~-~~~~~~~ 635 (647)
T PTZ00237 602 NQLPKTKTGKIPRQIISKF-LNDSNYQL-PDNVNDS 635 (647)
T ss_pred CCCCCCCCccEeHHHHHHH-HcCCCCCC-CccccCH
Confidence 9999999999999999865 32234577 6666543
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0039 Score=68.59 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc------ccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT------EGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T------E~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++......+...=.-.+|.. +..++++ .++...+.+++++++.+++|.|++|..+.+++++|+|+
T Consensus 428 G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~ 507 (517)
T PRK08008 428 GENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEIRKDLPRNC 507 (517)
T ss_pred CEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEeccCCCCC
Confidence 8888888888877776643222233332 2234444 44455677899999999999999999999999999999
Q ss_pred cchhhhHHHh
Q psy8155 568 TYKLKKLDLQ 577 (617)
Q Consensus 568 ~GK~dr~~L~ 577 (617)
+||++|+.|+
T Consensus 508 ~gK~~r~~l~ 517 (517)
T PRK08008 508 SGKIIKKNLK 517 (517)
T ss_pred ccceehhhcC
Confidence 9999998863
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.004 Score=68.90 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=62.9
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccc-eEEe-CCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGM-AAIL-DINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~-~~v~-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++.....++...=...+|.. |.. ++++ .++...+..++.+++.+ +++.|++|..+.+++++|+|
T Consensus 447 G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t 526 (538)
T TIGR03208 447 GENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEVVDALPAT 526 (538)
T ss_pred CEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEEeccCCCC
Confidence 8889999988888777653222334432 223 3333 44456778899999985 79999999999999999999
Q ss_pred ccchhhhHHHh
Q psy8155 567 GTYKLKKLDLQ 577 (617)
Q Consensus 567 ~~GK~dr~~L~ 577 (617)
++||++|+.|+
T Consensus 527 ~~gKv~r~~L~ 537 (538)
T TIGR03208 527 PAGKIQKFRLR 537 (538)
T ss_pred CccccchHhhc
Confidence 99999999886
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0044 Score=68.97 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|..+.+..++.....++...-.-..|. .|.. ++++......+.+++++++.++|+.|++|..+.+++++|+|.+
T Consensus 462 G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~ 541 (560)
T PRK08974 462 GFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITHCRRHLTGYKVPKLVEFRDELPKSNV 541 (560)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEEhhhCCCCCC
Confidence 888888888888777764322222222 1333 3333444455678899999999999999999999999999999
Q ss_pred chhhhHHHhhcCC
Q psy8155 569 YKLKKLDLQKEGF 581 (617)
Q Consensus 569 GK~dr~~L~~~g~ 581 (617)
||++|+.|++.+.
T Consensus 542 GK~~r~~l~~~~~ 554 (560)
T PRK08974 542 GKILRRELRDEAR 554 (560)
T ss_pred CcEeHHHHHHHHH
Confidence 9999999987654
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0046 Score=67.65 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=61.3
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cc-cceEEeCCCCCCC-----HHHHHHHHhhcCCCCCcCcEEEEeecc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TE-GMAAILDINKSLD-----VSAVSEGIKKALPSYARPLFIRCLREV 563 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE-~~~~v~~~~~~~~-----~~~l~~~l~~~Lp~~~~P~~~~~~~~l 563 (617)
|+.+.+..++.....++...=...+|. .| .+++++......+ ..++++++.++|+.|++|..+.+++++
T Consensus 405 G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~ 484 (503)
T PRK04813 405 GYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSL 484 (503)
T ss_pred cEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccC
Confidence 888888888888877765422223332 12 2444443222222 146899999999999999999999999
Q ss_pred cCCccchhhhHHHhhc
Q psy8155 564 EMTGTYKLKKLDLQKE 579 (617)
Q Consensus 564 P~t~~GK~dr~~L~~~ 579 (617)
|+|++||++|+.|.++
T Consensus 485 P~t~~gKv~r~~l~~~ 500 (503)
T PRK04813 485 PLTPNGKIDRKALIEE 500 (503)
T ss_pred CCCCCCCCcHHHHHHH
Confidence 9999999999999865
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0075 Score=66.88 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=63.6
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccc-eEEe-CC-CCCCCHHHHHHHHh-hcCCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGM-AAIL-DI-NKSLDVSAVSEGIK-KALPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~-~~v~-~~-~~~~~~~~l~~~l~-~~Lp~~~~P~~~~~~~~lP~ 565 (617)
|+.+++..++.....++...-.-.+|.. |.. ++++ .. +...+.+++.+++. +.++.|++|..+.+++++|+
T Consensus 440 G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~ 519 (547)
T PRK06087 440 GENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPR 519 (547)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEEeccCCC
Confidence 7888999888888777654444455543 222 3333 22 45567788888875 57999999999999999999
Q ss_pred CccchhhhHHHhhc
Q psy8155 566 TGTYKLKKLDLQKE 579 (617)
Q Consensus 566 t~~GK~dr~~L~~~ 579 (617)
|.+||++|+.|+++
T Consensus 520 t~sGK~~r~~l~~~ 533 (547)
T PRK06087 520 TASGKIQKFLLRKD 533 (547)
T ss_pred CCCCcCcHHHHHHH
Confidence 99999999988753
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0075 Score=67.19 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=62.1
Q ss_pred ccCCCHHHHHHHHHHcCccccccccc-----ccccceE-Ee-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYG-----ATEGMAA-IL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG-----~TE~~~~-v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..+++....++...=...+| ..|..+. ++ .++...+.+++++++.++++.|++|. +.+++++|+|+
T Consensus 472 G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-i~~v~~iP~t~ 550 (567)
T PRK06178 472 GMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTA 550 (567)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce-EEEeccCCCCC
Confidence 78888888888887766432122222 1233333 33 34445678899999999999999996 88899999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|.+.
T Consensus 551 ~GKv~r~~l~~~ 562 (567)
T PRK06178 551 TGKVRKQDLQAL 562 (567)
T ss_pred ccceeHHHHHHH
Confidence 999999998753
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0079 Score=65.87 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=62.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEe--CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAIL--DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~--~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++......+...=.-.+|- .|..+.++ ..+...+ .++++++++++|+.||+|..+.+++++|
T Consensus 399 G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP 478 (502)
T PRK08276 399 GVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELP 478 (502)
T ss_pred CEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEecCCC
Confidence 888888888887776654211122221 23333333 2222222 2378999999999999999999999999
Q ss_pred CCccchhhhHHHhhcCC
Q psy8155 565 MTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~ 581 (617)
+|++||++|+.|+++.|
T Consensus 479 ~t~~GKi~r~~L~~~~~ 495 (502)
T PRK08276 479 RTPTGKLYKRRLRDRYW 495 (502)
T ss_pred CCcccchhHHHHHHHHH
Confidence 99999999999998866
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0058 Score=75.77 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=66.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~-~iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|++.+...+..++ ...++.+++++..+++-+.+ .+..+++.+..|++.+..+.
T Consensus 413 ~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~ 489 (1389)
T TIGR03443 413 GPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMA---KRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTA 489 (1389)
T ss_pred CCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHH---HhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcCh
Confidence 3566666542 34588888765544333 34578899998877664332 34457888899998776554
Q ss_pred CC--ChHHHHHHHHhcCceEEEEccchHHHHH
Q psy8155 291 NL--RQNSLLHCINIAGVSAFIYGAELTDAVQ 320 (617)
Q Consensus 291 ~~--p~~~l~~il~~~~~~~vl~~~~~~~~~~ 320 (617)
.. ..+++...+++.++.++...+.....+.
T Consensus 490 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~ 521 (1389)
T TIGR03443 490 DDIGTPGRLAEWMAKYGATVTHLTPAMGQLLS 521 (1389)
T ss_pred hhccCHHHHHHHHHHhCCeEEEeCHHHHHHHH
Confidence 32 4568899999999999988887665543
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.011 Score=65.00 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=61.9
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccc-eEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGM-AAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|..+.+..+++.....+...-.-.+|.. |.. ++++ .++...+..+++.++.++++.|++|..+.+++++|+|.
T Consensus 426 G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~ 505 (516)
T PRK13383 426 GENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSSIPRNP 505 (516)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEEeCCCCCCC
Confidence 7888888888888776653222222221 222 3333 44445667899999999999999999999999999999
Q ss_pred cchhhhHHHh
Q psy8155 568 TYKLKKLDLQ 577 (617)
Q Consensus 568 ~GK~dr~~L~ 577 (617)
+||++|++|.
T Consensus 506 ~gKi~r~~L~ 515 (516)
T PRK13383 506 TGKVLRKELP 515 (516)
T ss_pred CCcCcHHHhC
Confidence 9999999874
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0093 Score=66.04 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=61.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCC-CCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DIN-KSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~-~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++.....++...=.-.+|. .|.. ++++ .++ ...+..+++++++++|+.|++|..+.+++++|+|
T Consensus 451 G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t 530 (541)
T TIGR03205 451 GFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEFVDELPRT 530 (541)
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEEeccCCCC
Confidence 888999999888877764322222331 2333 3333 322 2356789999999999999999999999999999
Q ss_pred ccchhhhHHHh
Q psy8155 567 GTYKLKKLDLQ 577 (617)
Q Consensus 567 ~~GK~dr~~L~ 577 (617)
.+||++|+.|+
T Consensus 531 ~~gK~~r~~l~ 541 (541)
T TIGR03205 531 PVGKLSRHELR 541 (541)
T ss_pred cccceeHhhcC
Confidence 99999998873
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.011 Score=64.92 Aligned_cols=86 Identities=17% Similarity=0.028 Sum_probs=61.5
Q ss_pred ccCCCHHHHHHHHHHcCccc---cc----ccccccccceEEe-CCCC---CCCHHHHHHHHhhcCCCCCcCcEEEEeecc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQ---IG----EFYGATEGMAAIL-DINK---SLDVSAVSEGIKKALPSYARPLFIRCLREV 563 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~---l~----n~YG~TE~~~~v~-~~~~---~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~l 563 (617)
|..+.++.++.....++... ++ +.+|-.. .++++ ..+. ....+++++++.++||.|++|..+.+++++
T Consensus 412 G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~ 490 (511)
T PRK13391 412 GVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEV-KAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDEL 490 (511)
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEecCCcccCcee-EEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecC
Confidence 88888888888887765421 11 1233211 22333 2221 123478999999999999999999999999
Q ss_pred cCCccchhhhHHHhhcCC
Q psy8155 564 EMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 564 P~t~~GK~dr~~L~~~g~ 581 (617)
|+|++||++|+.|++..+
T Consensus 491 P~t~~gKv~r~~l~~~~~ 508 (511)
T PRK13391 491 PRLPTGKLYKRLLRDRYW 508 (511)
T ss_pred CCCCccceeHHHHHHHhh
Confidence 999999999999987654
|
|
| >PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0011 Score=66.87 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=26.4
Q ss_pred EEEeccCCCccccCCCC--CcccCCCCCcceeEEEecCCCCcc
Q psy8155 29 IIRVDPVTSEPIRNKKG--LCTRCEPGEPGVFIGKIVPSNPAR 69 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~--~~~~~~~~~iG~fvNtl~lr~~~~ 69 (617)
-.+.|+++|+|++||.. .+. +++||+|+|++|+|+++|
T Consensus 262 ~~~~~~~i~~~~~~R~~~~~~~---~~~vG~~~~~~P~~i~~~ 301 (301)
T PF00668_consen 262 TGQDDVVIGTPVSGRPRSGPGF---SNTVGPFVNTLPVRIDVD 301 (301)
T ss_dssp HTTSEEEEEEEE---TTTSCGG---GGS-SS--EEEEEEEE--
T ss_pred cccceeeecccccCCCCCCcCh---hhCeeeEeEEEEEEEEcC
Confidence 45679999999999998 666 999999999999998875
|
This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A. |
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.039 Score=60.38 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=66.5
Q ss_pred ccCCCHHHHHHHHHHcCcc------cccccccccccceEEe-CCCCCCCH----HHHHHHHhhcCCCCCcCcEEEEeecc
Q psy8155 495 GNGLRPQIWSEFVDRFRIA------QIGEFYGATEGMAAIL-DINKSLDV----SAVSEGIKKALPSYARPLFIRCLREV 563 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~------~l~n~YG~TE~~~~v~-~~~~~~~~----~~l~~~l~~~Lp~~~~P~~~~~~~~l 563 (617)
|=.++...++.....++.+ -..+-++.-...++++ .++ ..+. .+|+.++++.+.++..|+.+.++++|
T Consensus 505 GhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~L 583 (626)
T KOG1175|consen 505 GHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-SHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGL 583 (626)
T ss_pred ceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-CCChHHHHHHHHHHHHhhcCcccccceeEecCCC
Confidence 5557788788777777653 2223332222255565 444 3333 36778888899999999999999999
Q ss_pred cCCccchhhhHHHhhcCCCCCccCCeeEEEe
Q psy8155 564 EMTGTYKLKKLDLQKEGFDPNVIQDRLYYLS 594 (617)
Q Consensus 564 P~t~~GK~dr~~L~~~g~~~~~TGD~lg~~d 594 (617)
|+|.+||+-|+.|++.-..- .-|| ..-+.
T Consensus 584 PkTrSGKimRr~lrki~~g~-~~~d-~st~~ 612 (626)
T KOG1175|consen 584 PKTRSGKIMRRALRKIASGK-AVGD-TSTLA 612 (626)
T ss_pred CccccchhHHHHHHHHhccC-cccc-ccccC
Confidence 99999999999999664422 4566 54443
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=65.33 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccceEEe--CCCC-CCCHH----HHHHHHhhcCCCCCcCcEEEEeec
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMAAIL--DINK-SLDVS----AVSEGIKKALPSYARPLFIRCLRE 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~~v~--~~~~-~~~~~----~l~~~l~~~Lp~~~~P~~~~~~~~ 562 (617)
|..+.+..++.....++...=.-.||.. |..++++ .+.. ....+ .+.+.+++.+++|++|..+.++++
T Consensus 432 G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~ 511 (540)
T PRK05857 432 GVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTD 511 (540)
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhc
Confidence 7778888888888777643111224432 2333333 2211 11122 344566678999999999999999
Q ss_pred ccCCccchhhhHHHhhc
Q psy8155 563 VEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 563 lP~t~~GK~dr~~L~~~ 579 (617)
+|+|++||++|++|++.
T Consensus 512 iP~t~~GKi~r~~l~~~ 528 (540)
T PRK05857 512 IPRTQSGKVMRASLAAA 528 (540)
T ss_pred CCCCCCcceeHHHHHHh
Confidence 99999999999999755
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0012 Score=72.28 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=59.5
Q ss_pred cCceeeee--ccCCCHHHHHHHHHHcCcc-cccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecc
Q psy8155 487 AHNVRLMF--GNGLRPQIWSEFVDRFRIA-QIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREV 563 (617)
Q Consensus 487 l~~lr~v~--Ge~l~~~~~~~~~~~~~~~-~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~l 563 (617)
-++|+++. ++.-...-.+++++.+|.. .+...|+.||+...+-....... ..-.|.. ..+.|++.-
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~~~~~~--------~~l~~~~---~ffEFip~~ 334 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLDPEDPG--------YVLAPDS---GFFEFIPVD 334 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES-CCC----------EEE-TTS---SEEEEEE-S
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecCCCCCc--------eEeecCC---eEEEEEecc
Confidence 46777554 3333335567777777763 56689999998766663211100 0111222 144444321
Q ss_pred cC----Cccchh-hhHHH-----------hhcCCCCCccCCeeEEEeCC-Cc--eeeCCHHHHHHHhcCCcCC
Q psy8155 564 EM----TGTYKL-KKLDL-----------QKEGFDPNVIQDRLYYLSSK-GV--YEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 P~----t~~GK~-dr~~L-----------~~~g~~~~~TGD~lg~~d~d-~G--~l~i~GR~~d~I~~~G~~v 617 (617)
.. ..++++ .-.+| +..|...|+.|| +.+...- ++ .+.|+||.+.++.+.|+|+
T Consensus 335 ~~~~~~~~~~~~l~~~ele~G~~YelviTt~~GLyRY~iGD-vVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl 406 (528)
T PF03321_consen 335 EDEQNPSEQPKTLLLHELEVGEEYELVITTNSGLYRYRIGD-VVRVTGFYNQTPRIEFVGRRGQVLSLFGEKL 406 (528)
T ss_dssp TT-------SSSEEGGG--TT-EEEEEEESTTS-SSEEECE-EEEEEEEETTEEEEEEEEETTEEE-SSS--E
T ss_pred CCcccccCCCceecHHHhcCCCeEEEEEecccceeeeecCC-EEEEeeccCCCcEEEEeccCCceeecceeec
Confidence 11 112221 11111 134666678999 8888643 35 6999999999999999984
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0081 Score=66.26 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=58.3
Q ss_pred ccCCCHHHHHHHHHHcCccc---cc----ccccccccceEEeCCCCCCCHHHHHHHHhhcCCCC--CcCcEEEEee--cc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQ---IG----EFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY--ARPLFIRCLR--EV 563 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~---l~----n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~--~~P~~~~~~~--~l 563 (617)
|+.+.+..++.....++... ++ ..+|... .++++......+.+++++++.++|+.| |+|..+.+++ ++
T Consensus 425 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~~~~v~~~~l 503 (525)
T PRK05851 425 GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARP-GLVIAAEFRGPDEAGARSEVVQRVASECGVVPSDVVFVAPGSL 503 (525)
T ss_pred CEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCce-eEEEEEEecCcchHHHHHHHHHHHHHHhCCCccEEEEECCCCc
Confidence 88899999999888877531 11 1122221 122222112235567778888888887 9999999998 89
Q ss_pred cCCccchhhhHHHhh
Q psy8155 564 EMTGTYKLKKLDLQK 578 (617)
Q Consensus 564 P~t~~GK~dr~~L~~ 578 (617)
|+|++||++|++|++
T Consensus 504 P~t~~GKi~r~~L~~ 518 (525)
T PRK05851 504 PRTSSGKLRRLAVKR 518 (525)
T ss_pred CcCcchHHHHHHHHH
Confidence 999999999999975
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=64.02 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccceEEe--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGMAAIL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...-.-.+|. .|..+.++ .++...+..++++++.+.||.|++|..+.+ +++|+|+
T Consensus 446 G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~ 524 (545)
T PRK08162 446 GENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVVF-GELPKTS 524 (545)
T ss_pred CEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEEe-cccCCCC
Confidence 888999988888877765322222221 23333333 444446788999999999999999999875 6899999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|+.|++.
T Consensus 525 ~gK~~r~~l~~~ 536 (545)
T PRK08162 525 TGKIQKFVLREQ 536 (545)
T ss_pred CcCCcHHHHHHH
Confidence 999999999765
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.015 Score=66.63 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=59.1
Q ss_pred ccCCCHHHHHHHHH-HcCcc---cccc----cccccccceEEe-C--CCCCCCHHHHHH----HHhhcCCCCCcCcEEEE
Q psy8155 495 GNGLRPQIWSEFVD-RFRIA---QIGE----FYGATEGMAAIL-D--INKSLDVSAVSE----GIKKALPSYARPLFIRC 559 (617)
Q Consensus 495 Ge~l~~~~~~~~~~-~~~~~---~l~n----~YG~TE~~~~v~-~--~~~~~~~~~l~~----~l~~~Lp~~~~P~~~~~ 559 (617)
|..+.+..++.... ..+.+ -++- ..|.....++|+ . ++...+.++|++ .++++|+++++|..+++
T Consensus 619 G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~ 698 (728)
T PLN03052 619 GIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVI 698 (728)
T ss_pred CEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEE
Confidence 77788988888774 44532 1111 123233345555 3 344455566655 46678999999999999
Q ss_pred eecccCCccchhhhHHHhhc
Q psy8155 560 LREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 560 ~~~lP~t~~GK~dr~~L~~~ 579 (617)
++++|+|.+||++|+.|++.
T Consensus 699 v~~lP~T~sGKi~Rr~Lr~~ 718 (728)
T PLN03052 699 VPSFPRTASNKVMRRVLRQQ 718 (728)
T ss_pred cCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999864
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.035 Score=61.16 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.8
Q ss_pred CCCCeEEEEEccCCC-CCCceEEechHHHH
Q psy8155 371 GVQDKLIYIYTSGTT-GLPKAAVISNHRYY 399 (617)
Q Consensus 371 ~~~~~a~ii~TSGST-G~PKgV~~sh~~l~ 399 (617)
.++.+.+..-||||| |++|-+.+|...+-
T Consensus 98 ~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 98 SSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred CCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 456788899999999 89999999996664
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.032 Score=60.49 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=66.7
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH--HHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF--VCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~--iva~lA~~~aG~~~vpld 289 (617)
.++.++++.- +-..|.+-+.-.....+.+.- ++.+||++--..+-+--+ .-.+++.+..|++.+..+
T Consensus 169 ~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~--~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~e 246 (528)
T COG0365 169 PADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG--DLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYD 246 (528)
T ss_pred CCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh--CCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeC
Confidence 4556666542 234566655555555554443 345888766555544222 344689999999998765
Q ss_pred CC--CChHHHHHHHHhcCceEEEEccchHHHHHHH
Q psy8155 290 HN--LRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322 (617)
Q Consensus 290 p~--~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~ 322 (617)
.. +.++++..++++.++.++.+.+.....+...
T Consensus 247 g~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~ 281 (528)
T COG0365 247 GRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL 281 (528)
T ss_pred CCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhc
Confidence 44 3488999999999999999998877666543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.026 Score=61.87 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=67.9
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|++.. +-.+|++.+...+... .....++++++++...++-... +...+++.+..|+..+..+
T Consensus 159 ~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~ 236 (508)
T TIGR02262 159 QADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELY--ARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG 236 (508)
T ss_pred CCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHH--hHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeC
Confidence 4667777653 3457888876554332 1234588999988877765433 4455677788999888877
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDA 318 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~ 318 (617)
+....+++...+++.++..+...+.....
T Consensus 237 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 265 (508)
T TIGR02262 237 ERPTPDAVFDRLRRHQPTIFYGVPTLYAA 265 (508)
T ss_pred CCCCHHHHHHHHHHHCCcEEecchHHHHH
Confidence 76678888999999999999988765443
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.14 Score=53.64 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=78.0
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
-+|..++...+..+|+.|...|..+||+|.++..-+.. -+..-+|+.++|++++|+.+ -.-++...++++.++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCcEEE
Confidence 38999999999999999999999999999988772211 16788999999999999988 3467778899999999999
Q ss_pred EccchHHHHHHHHHhc
Q psy8155 311 YGAELTDAVQEISTSL 326 (617)
Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (617)
+.+.+.-.+.+.....
T Consensus 188 ~tps~~l~lae~~~~~ 203 (438)
T COG1541 188 ATPSYLLYLAEEAEEE 203 (438)
T ss_pred EChHHHHHHHHHHHHc
Confidence 9998877766665544
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.038 Score=61.55 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=60.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccce-EEe-CCCC-----CCCHHHHHHHHhhcCCCCCcCcEEEEeec
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMA-AIL-DINK-----SLDVSAVSEGIKKALPSYARPLFIRCLRE 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~-~v~-~~~~-----~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~ 562 (617)
|+.+.+..++......+...-...+|.. |..+ +++ ..+. ....+++++++.++||.|++|..+.+ ++
T Consensus 460 G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~ 538 (567)
T PLN02479 460 GENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GP 538 (567)
T ss_pred CEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-cc
Confidence 7888888888887776654333334432 2333 333 2221 23356899999999999999999876 78
Q ss_pred ccCCccchhhhHHHhhc
Q psy8155 563 VEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 563 lP~t~~GK~dr~~L~~~ 579 (617)
+|+|++||++|+.|++.
T Consensus 539 iP~t~~gKv~r~~L~~~ 555 (567)
T PLN02479 539 LPKTATGKIQKHVLRAK 555 (567)
T ss_pred CCCCCccCeeHHHHHHH
Confidence 99999999999999765
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.028 Score=62.36 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=55.9
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCC---CCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA----TEG-MAAIL-DINKSLDVSAVSEGIKKALP---SYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp---~~~~P~~~~~~~~lP~ 565 (617)
|..+.++.++.....++...=.-.+|. .|. .++|+ .++...+..++++.+++.+. .+++|..+.+++++|+
T Consensus 450 G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~lP~ 529 (552)
T PRK09274 450 GGTLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIERFLIHPSFPV 529 (552)
T ss_pred CEEECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeEEeccCCCCc
Confidence 778888888888887765321222221 122 33333 44444555556666655544 4567789999999999
Q ss_pred C--ccchhhhHHHhhc
Q psy8155 566 T--GTYKLKKLDLQKE 579 (617)
Q Consensus 566 t--~~GK~dr~~L~~~ 579 (617)
| ++||++|++|++.
T Consensus 530 t~~~~GKi~r~~L~~~ 545 (552)
T PRK09274 530 DIRHNAKIFREKLAVW 545 (552)
T ss_pred cccccccccHHHHHHH
Confidence 9 7999999999763
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.1 Score=59.08 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=59.2
Q ss_pred ccCCCHHHHHHHHHH-cCccc--cccccc------------------------ccccceEEe--CCC-CCCCHHHHHHHH
Q psy8155 495 GNGLRPQIWSEFVDR-FRIAQ--IGEFYG------------------------ATEGMAAIL--DIN-KSLDVSAVSEGI 544 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~-~~~~~--l~n~YG------------------------~TE~~~~v~--~~~-~~~~~~~l~~~l 544 (617)
|+.+.+..++..... .+... ..-.+| ..|..++++ .++ ...+.++|.+++
T Consensus 493 G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~ 572 (631)
T PRK07769 493 GRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDI 572 (631)
T ss_pred CeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHH
Confidence 888999988887764 45321 011221 123333333 333 346788999999
Q ss_pred hhcCCC-CC-cCcEEEEee--cccCCccchhhhHHHhhc
Q psy8155 545 KKALPS-YA-RPLFIRCLR--EVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 545 ~~~Lp~-~~-~P~~~~~~~--~lP~t~~GK~dr~~L~~~ 579 (617)
+++|+. |+ .|..+.+++ +||+|++||++|++|++.
T Consensus 573 ~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~ 611 (631)
T PRK07769 573 RAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAA 611 (631)
T ss_pred HHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHH
Confidence 999995 66 488888886 699999999999999865
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.15 Score=57.02 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=60.4
Q ss_pred ccCCCHHHHHHHHHHcCccc--ccccccccc----c-ceEEe-CCCCCCCHHHHHHHHhhcCC-CCCcCcEEEEee--cc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQ--IGEFYGATE----G-MAAIL-DINKSLDVSAVSEGIKKALP-SYARPLFIRCLR--EV 563 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~--l~n~YG~TE----~-~~~v~-~~~~~~~~~~l~~~l~~~Lp-~~~~P~~~~~~~--~l 563 (617)
|+.+.+..+++..+..|... -.-.+|..+ . .+++. ..+...+.+++++++.+.++ .|++|..+.++. ++
T Consensus 468 G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~l 547 (579)
T PRK09192 468 GRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPHSL 547 (579)
T ss_pred CCccCHHHHHHHHHhcCCccCCcEEEEEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCc
Confidence 88899999998888776532 122233322 2 23333 33344566789999999875 688999888885 89
Q ss_pred cCCccchhhhHHHhhc
Q psy8155 564 EMTGTYKLKKLDLQKE 579 (617)
Q Consensus 564 P~t~~GK~dr~~L~~~ 579 (617)
|+|.+||++|++|++.
T Consensus 548 P~t~~GKv~R~~l~~~ 563 (579)
T PRK09192 548 PRTSSGKLSRAKAKKR 563 (579)
T ss_pred CCCCCcchhHHHHHHH
Confidence 9999999999999764
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.16 Score=57.15 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=58.3
Q ss_pred ccCCCHHHHHHHHHH-cCcc-c-ccccccc----cccceEEe--CCCC-CCCHHHHHHHHhhcCC-CCCc-CcEEEEee-
Q psy8155 495 GNGLRPQIWSEFVDR-FRIA-Q-IGEFYGA----TEGMAAIL--DINK-SLDVSAVSEGIKKALP-SYAR-PLFIRCLR- 561 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~-~~~~-~-l~n~YG~----TE~~~~v~--~~~~-~~~~~~l~~~l~~~Lp-~~~~-P~~~~~~~- 561 (617)
|+.+.+..++..... .+.. . ..-.+|. .|..++++ .++. ..+.+++.+++.+.+. .|++ |..+.+++
T Consensus 505 G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~ 584 (612)
T PRK12476 505 GRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVRLVPA 584 (612)
T ss_pred CcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEEEECC
Confidence 888999998887753 4532 0 1122222 24444443 3332 3567788888988888 5888 57888886
Q ss_pred -cccCCccchhhhHHHhhc
Q psy8155 562 -EVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 562 -~lP~t~~GK~dr~~L~~~ 579 (617)
++|+|++||++|++|++.
T Consensus 585 ~~lP~t~~GKi~r~~L~~~ 603 (612)
T PRK12476 585 GAIPRTTSGKLARRACRAQ 603 (612)
T ss_pred CCcCcCCchHHHHHHHHHH
Confidence 699999999999999865
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.05 Score=62.78 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 235 Ty~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
+ -|+.++.+++|+.+......-.+++.++-.-..++...+-...+ +-.+..++...+.+++....+++.+-+..+...
T Consensus 130 ~-~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~~~-~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs 207 (1032)
T KOG1178|consen 130 N-SELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVETI-ADSFQMVLHNEDTREIRVGGNDSTALLSFTSGS 207 (1032)
T ss_pred c-cccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchhhc-cchhhhhhccCCCcceeeecccccceEeecccc
Confidence 5 78888899999999887766666666665555555555555555 677778888888888888888888887777654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.44 Score=54.12 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=65.8
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~--~~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|++.. +-.+|++.+...+..+.. ..++.+++++..++|-.- .+ ..+++.+..|+..+...
T Consensus 219 ~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~-~~~~~~l~~G~~i~~~~ 294 (651)
T PLN02736 219 KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL---STKFYPSDVHISYLPLAHIYER-VNQIVMLHYGVAVGFYQ 294 (651)
T ss_pred CccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh---ccCCCCCCEEEEeCCHHHHHHH-HHHHHHHHcCCEEEEeC
Confidence 4677777652 346899988776665553 346788999888887432 33 34666788898876654
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
. ..+++...+++.++.+++.-+.....+
T Consensus 295 ~--~~~~~~~~i~~~~~t~~~~vP~~~~~l 322 (651)
T PLN02736 295 G--DNLKLMDDLAALRPTIFCSVPRLYNRI 322 (651)
T ss_pred C--CHHHHHHHHHHhCCcEEecchHHHHHH
Confidence 3 467788889999999999887766544
|
|
| >TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.19 Score=54.21 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=46.3
Q ss_pred cCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCcc
Q psy8155 34 PVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSA 95 (617)
Q Consensus 34 ~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~P 95 (617)
+.+|+||.+|...+.....|.+|+|.|+||+. ..++.+.|++|++.+..+.+|++..
T Consensus 279 i~~~~pv~~R~~~~~~~~~N~~~~~~~~l~~~-----~~~~~~~l~~v~~~~~~~k~~~~~~ 335 (446)
T TIGR02946 279 LVAMVPVSLRPMEDDSEGGNQVSAVLVPLPTG-----IADPVERLSAIHASMTRAKESGQAM 335 (446)
T ss_pred eEEEEeeeccccccCCCCCCEEEEEEecCCCC-----CCCHHHHHHHHHHHHHHHHHhHhhc
Confidence 99999999998543345589999999999874 2346688899999999999997654
|
This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=86.55 E-value=5.9 Score=42.21 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=68.0
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~--~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|..++......+++.+...|+++||++......+. ......++.++.|+..+++++..+ +++...+++.++.+++
T Consensus 94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQT-EKQVQLIQDFKPDIIM 172 (422)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCH-HHHHHHHHHHCCCEEE
Confidence 3688888777777888888889999999887665432 223346778899999999987654 7788899999999999
Q ss_pred EccchHHHHHH
Q psy8155 311 YGAELTDAVQE 321 (617)
Q Consensus 311 ~~~~~~~~~~~ 321 (617)
..+.....+..
T Consensus 173 ~~Ps~l~~L~~ 183 (422)
T TIGR02155 173 VTPSYMLNLLE 183 (422)
T ss_pred EcHHHHHHHHH
Confidence 98877665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=85.33 E-value=7.9 Score=41.63 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=63.8
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|..++...+...++.+...|+.+||++.++.+-+.. .....+++++.|+..+|... .+....++++.++..++
T Consensus 105 ~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l~ 181 (445)
T TIGR03335 105 FLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGIV 181 (445)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEEE
Confidence 47999999888888988888999999999998876542 23445788999999887654 24556788999999988
Q ss_pred EccchHH
Q psy8155 311 YGAELTD 317 (617)
Q Consensus 311 ~~~~~~~ 317 (617)
.......
T Consensus 182 ~~ps~ll 188 (445)
T TIGR03335 182 ASVFKLL 188 (445)
T ss_pred ECHHHHH
Confidence 7665443
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=83.61 E-value=1.5 Score=48.46 Aligned_cols=94 Identities=11% Similarity=-0.050 Sum_probs=62.5
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEcCC--CHHHHHHHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKG-DSVALMLEN--RPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g-~~V~i~~~~--s~~~iva~lA~~~aG~~~vpl 288 (617)
.++.+|++.. +-.+|++.+...+..+ ....++.++ +++...+|- +..++..+++.+..|+..+.+
T Consensus 150 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~ 226 (545)
T PRK07768 150 GEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAM---FVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKV 226 (545)
T ss_pred CCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHH---HHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEe
Confidence 4677777653 3458898886654443 334567776 787777664 455666677778899988877
Q ss_pred CCCC---ChHHHHHHHHhcCceEEEEccchHH
Q psy8155 289 NHNL---RQNSLLHCINIAGVSAFIYGAELTD 317 (617)
Q Consensus 289 dp~~---p~~~l~~il~~~~~~~vl~~~~~~~ 317 (617)
.+.. .......++++.++.++.+......
T Consensus 227 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 258 (545)
T PRK07768 227 TPMDFLRDPLLWAELISKYRGTMTAAPNFAYA 258 (545)
T ss_pred CHHHHHHhHHHHHHHHHHhCCEEEECchHHHH
Confidence 6532 4556778899999998765444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 617 | ||||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-23 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 4e-23 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 2e-16 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-13 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-11 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 9e-10 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 1e-09 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 1e-09 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-09 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 1e-09 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-08 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 2e-08 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 7e-07 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-06 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-06 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 2e-06 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 3e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 4e-06 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 5e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 6e-06 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 7e-06 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 8e-06 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 2e-05 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-04 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 5e-04 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 8e-04 |
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 617 | |||
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 6e-51 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 3e-49 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-48 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-45 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 5e-45 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 3e-43 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 4e-42 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 1e-40 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 3e-40 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 1e-37 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 6e-37 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 5e-36 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 2e-34 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 2e-33 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 2e-33 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 3e-33 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 2e-27 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 1e-19 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 4e-19 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 1e-17 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 5e-13 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 6e-12 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 8e-12 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 5e-11 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 9e-11 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 5e-07 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 8e-06 |
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 6e-51
Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 17/330 (5%)
Query: 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
++ D T+AD++R +A P++ FM + T + A + R+A+ L G+ GD VA
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
++ +N E + L ++ +G I +N+ L + + + S + G + D V +
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
SLG K ++ + + L S+ P S P G D + I+T+
Sbjct: 121 LPSLGGVKKAYAIGDGSGPFAP-------FKDLASDTPFSAP----EFGAADGFVIIHTA 169
Query: 383 GTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
G P+ A+IS ++ D LPL+H G + + G
Sbjct: 170 AVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT-LQQAGGA 228
Query: 443 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 502
VI KF + D+ +K TV M +L P A +R + G P+
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-PAQLAS-LRAVTG-LDTPET 285
Query: 503 WSEFVDRFRIAQIGEFYGATE--GMAAILD 530
F A +G +E G++
Sbjct: 286 IERFEATCPNATFWATFGQSETSGLSTFAP 315
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-49
Identities = 65/360 (18%), Positives = 125/360 (34%), Gaps = 35/360 (9%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
A K ++ + T ++E + R A+ G+ + + L++
Sbjct: 22 LFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVML 81
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
+ +LG GV+ + N L ++ + + A I L V + S
Sbjct: 82 DTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA 141
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
+ S +S P + L +P T D ++Y+S
Sbjct: 142 EHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC---------DDIAFWLYSS 192
Query: 383 GTTGLPKAAVISNHRYYFLG--GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
G+TG PK V + H + +G D ++ L+ G + L G
Sbjct: 193 GSTGKPKGTVHT-HANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251
Query: 441 -CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDKAHNVRLM 493
+++ ++ +A F+ + +++ TV +L +P P +R+
Sbjct: 252 ATAILMAERPTADAIFARLVEHRPTV------FYGVPTLYANMLVSPNLPARADVAIRIC 305
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
G L +I F F +I + G+TE M I N++ V + G + +P Y
Sbjct: 306 TSAGEALPREIGERFTAHFGC-EILDGIGSTE-MLHIFLSNRAGAVEYGTTG--RPVPGY 361
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 176 bits (450), Expect = 1e-48
Identities = 80/325 (24%), Positives = 130/325 (40%), Gaps = 30/325 (9%)
Query: 208 LTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
I + R+ A SP + + T Q+ A +NR A+ A G+ KGD VAL++
Sbjct: 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLM 75
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N EF CL+ G +KLG + IN L + ++ +G IYGA + I
Sbjct: 76 PNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQ 135
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ DS L+ L P++ G D L +YTSGTT
Sbjct: 136 ADP-PGTVTDWIGADS----------LAERLRSAAADEPAV--ECGGDDNLFIMYTSGTT 182
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK V ++ + + A I R +DR PLP++H A I + + G ++
Sbjct: 183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIF-SAMRGVTLIS 241
Query: 446 RKKFSASNYFSDVCKYKCTVG-----QYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--L 498
+F A+ +S + + + +G + PE E A + R G +
Sbjct: 242 MPQFDATKVWSLIVEERVCIGGAVPAILNF-----MRQVPEFAELDAPDFRYFITGGAPM 296
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATE 523
+ + + ++ + Y TE
Sbjct: 297 PEALIKIYAAKN--IEVVQGYALTE 319
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 2e-45
Identities = 70/318 (22%), Positives = 119/318 (37%), Gaps = 24/318 (7%)
Query: 211 ADIFREHAVRSPNKV-IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 269
+ P+K+ I + + ++ A + RVAN +A+GL+ GD VA E
Sbjct: 6 FARLFDKL-DDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV 64
Query: 270 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
E + L+L + G + +N + L + I A + D + I+ +G
Sbjct: 65 EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-- 122
Query: 330 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 389
+ + PD S L+ + + ++ G D +YTSGTTG K
Sbjct: 123 ATVETLGPDGRGS---------LTDAAAGASEAFATID--RGADDLAAILYTSGTTGRSK 171
Query: 390 AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF 449
A++S+ + F D LP+YHT G + L ++ KF
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF 231
Query: 450 SASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSE 505
+ + TV +G LL +P ++ ++RL L E
Sbjct: 232 DPDKILDLMA--RATV--LMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHRE 287
Query: 506 FVDRFRIAQIGEFYGATE 523
+ + A + E YG TE
Sbjct: 288 WSAKTGHA-VLERYGMTE 304
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 5e-45
Identities = 51/320 (15%), Positives = 116/320 (36%), Gaps = 15/320 (4%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+++ + A ++ + + +T Q + ++ +A + V L ++N
Sbjct: 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDN 57
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
+ + L + A+IN L N + + + V L +I +
Sbjct: 58 SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD 117
Query: 328 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ + ++ + + + + L+ + D ++TSGTTG
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
KA + +Y +GF + + LP+YH +G ++ + A+I G V I
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR-AVIEGFTVRIVD 236
Query: 448 KFSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 503
KF+A + + + T + +L+ ++ + +N++ + G L +
Sbjct: 237 KFNAEQILTMIKNERITH--ISLVPQTLNWLM---QQGLHEPYNLQKILLGGAKLSATMI 291
Query: 504 SEFVDRFRIAQIGEFYGATE 523
+ I +G TE
Sbjct: 292 ETALQYN--LPIYNSFGMTE 309
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 3e-43
Identities = 67/329 (20%), Positives = 114/329 (34%), Gaps = 37/329 (11%)
Query: 209 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTT 385
G+ + S P + + P + +I YTSGTT
Sbjct: 123 GARIIFLGDLVRDGEPYSY-------GPPIEDPQREP----------AQPAFIFYTSGTT 165
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443
GLPKAA+I ++ Q+G R + +PLYH G + AL
Sbjct: 166 GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
Query: 444 VIRKKFSASNYFSDVCKYKCTVG-----QYIGEMCRYLLSTPEKPEDKA--HNVRLMFGN 496
V+ ++F + V + + T L + ++R +
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDA-----LAAAAAHAGSSLKLDSLRHVTFA 280
Query: 497 G--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G + + ++ YG TE
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTE 308
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 4e-42
Identities = 58/346 (16%), Positives = 120/346 (34%), Gaps = 33/346 (9%)
Query: 198 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
W+ R D + I P+ + + + + +++ S +A
Sbjct: 13 WSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRL 72
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
+GL KGD+ + L N EF ++ L K GV+ ++ RQ L I I
Sbjct: 73 AEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132
Query: 311 Y-----GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365
+ + S ++ + + + + + ++P
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLS-PEIILMLNHQATDFGLLDWIETPAETFVDFSSTPA- 190
Query: 366 LSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 424
D++ + + G+TG PK +++ Y + A A G + R LP
Sbjct: 191 --------DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAP 242
Query: 425 HTAG----GAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP 480
H GA+ L G CVV+ N FS + +++ + + L
Sbjct: 243 HNFMLSSPGALG---VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA 299
Query: 481 EKPEDKAHNVRL--MFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
+ +D+ +++L + G + + + ++ + +G EG
Sbjct: 300 AQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEG 344
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-40
Identities = 49/265 (18%), Positives = 100/265 (37%), Gaps = 19/265 (7%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQE 321
N EF + L +LG + + R + + + A +A+I G + ++
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQ 143
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 381
+ + L + + + L ++ T P L V D +
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLP------------LEDLHTEPVKLP-EVKSSDVAFLQLS 190
Query: 382 SGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC-IGQALIFG 440
G+TGL K ++ Y + + LP+ H + + L G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTV 465
VV+ S + F + + K T+
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTI 275
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 3e-40
Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 23/267 (8%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
DL + DI HA + + + + + + +++ ++ +A QG+K G++ + L
Sbjct: 26 DLPLTDILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLG 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQE 321
N E + L KLGV L + +++ L + + I + D +
Sbjct: 84 NVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNT 143
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-Y 380
T S + + + + A + P+ D++ Y
Sbjct: 144 FVTEHSSIRVVQLLNDSGEHNLQDAINHPA--EDFTATPSPA----------DEVAYFQL 191
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALI 438
+ GTTG PK +++ YY+ F + R+ +P H G +
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY-AMSSPGSLGVFL 250
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTV 465
G VV+ SA+ F + K++ V
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNV 277
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-37
Identities = 70/333 (21%), Positives = 124/333 (37%), Gaps = 33/333 (9%)
Query: 206 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
K+L + E+ +K I +T VE + RVA+ G+++GD + L
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIML 79
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
L + PEFV +LG S G I N L + I A + V++ +
Sbjct: 80 FLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTS 382
V S S L P + D ++ + Y+S
Sbjct: 140 RESDVKVMCV---------DSAPDGCLHFSELTQADENEAPQVDIS---PDDVVALPYSS 187
Query: 383 GTTGLPKAAVISNHRYYF-----LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
GTTGLPK +++ H+ + F ++D LP++H + L
Sbjct: 188 GTTGLPKGVMLT-HKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246
Query: 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQ-----YIGEMCRYLLSTPEKPEDKAHNVRL 492
G ++I KF + + KYK ++ + + +P+ + ++R+
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS-----IAKSPDLDKHDLSSLRM 301
Query: 493 MFGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
+ G L ++ +F A++G+ YG TE
Sbjct: 302 IKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 6e-37
Identities = 58/327 (17%), Positives = 91/327 (27%), Gaps = 45/327 (13%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
+ ++ F T ++ A + A + VA+
Sbjct: 24 LFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPA 78
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328
E + GV +N L H ++ + S +
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVL------------------ 120
Query: 329 NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLP 388
+ P AL + +V D + +YTSGTTG P
Sbjct: 121 ----------APPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPP 170
Query: 389 KAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448
K AVI A+A + +D LPL+H G + I L G V +
Sbjct: 171 KGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230
Query: 449 FSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAH---NVRLMFGNG--LRPQ 501
FS ++ T+ G M + T + A RL+ L
Sbjct: 231 FSTEGAAREL-NDGATM--LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVH 287
Query: 502 IWSEFVDRFRIAQIGEFYGATE-GMAA 527
++ E YG TE M
Sbjct: 288 DHERIAAATG-RRVIERYGMTETLMNT 313
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-36
Identities = 62/332 (18%), Positives = 111/332 (33%), Gaps = 21/332 (6%)
Query: 207 DLTIADIFREHAVR---SPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSV 261
D T + + R P + F + T + S R+A GL +
Sbjct: 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 138
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV---QDKLIY 378
+ L K+ DS + + + S +P + +
Sbjct: 139 VQKKLPIIQKIII----MDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIAL 194
Query: 379 I-YTSGTTGLPKAAVISNHR----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
I +SG+TGLPK + HR + + + +P +H G +
Sbjct: 195 IMNSSGSTGLPKGVALP-HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 493
G LI G VV+ +F + + YK + + + + + N+ +
Sbjct: 254 G-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 312
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G L ++ RF + I + YG TE
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-34
Identities = 63/332 (18%), Positives = 112/332 (33%), Gaps = 22/332 (6%)
Query: 207 DLTIADIFREHAVRSPN--KVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
+ + R++ R + F T +++ + S + GL +A
Sbjct: 22 EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
L EN EF + +GV A N L+H + I+ + + D V +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV----QDKLIY 378
++ + + S Q L + S V ++++
Sbjct: 142 QKTVTTIKTIV-----ILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVAL 196
Query: 379 I-YTSGTTGLPKAAVISNHRYY----FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
I +SG+TGLPK ++ H Y T +P +H G +
Sbjct: 197 IMNSSGSTGLPKGVQLT-HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTL 255
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 493
G LI G VV+ KF + + YKCT + + L + + N+ +
Sbjct: 256 G-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G L ++ RF + + + YG TE
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTE 346
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 77/386 (19%), Positives = 131/386 (33%), Gaps = 50/386 (12%)
Query: 192 RYLRFLWAARRVAQKDLTIA-DIFREHAV-----RSPNKVIFMFEN-----TEWTAQQVE 240
+ + W + V K A D+ A + P + N W +++
Sbjct: 22 QSMSLQWGHQEVPAK-FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELS 80
Query: 241 AYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
S + AN A GL++GD VA++L PE+ + LG + G+I ++ +L+
Sbjct: 81 ENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILY 140
Query: 300 CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ ++ A + G E+ V +++ S S LL+E
Sbjct: 141 RLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK------SCDGWLNFKKLLNEA 194
Query: 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGFRTKDRFY 418
T+ + G Q+ +TSGT+GLPK A S + L + G + D +
Sbjct: 195 STTHHCV--ETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWTGLQASDIMW 251
Query: 419 TPLPL---YHTAGGAMCIGQALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC 473
T + M G C + KF + Y M
Sbjct: 252 TISDTGWILNILCSLME---PWALGACTFVHLLPKFDPLVILKTLSSYPIKS------MM 302
Query: 474 ------RYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGM 525
R LL H ++ G L P+ + + + I E YG TE
Sbjct: 303 GAPIVYRMLLQQDLSSYKFPH-LQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTE-T 359
Query: 526 AAILDINKSLDVSAVSEGIKKALPSY 551
++K++ + G A Y
Sbjct: 360 GLTCMVSKTMKIKPGYMG--TAASCY 383
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-33
Identities = 55/340 (16%), Positives = 124/340 (36%), Gaps = 41/340 (12%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENT--------EWTAQQVEAYSNRVANFFLAQGLKKG 258
+++AD A + K + ++ + ++A+ +G++KG
Sbjct: 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
+ V + + N ++V L ++ IN + L H +N + + + + L +
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ + G ++F + +S LS ++ ++ V ++ +
Sbjct: 138 FKPVLEKTGV-ERVFVVGGEVNS----------LSEVMDSGSEDFENVK--VNPEEDVAL 184
Query: 379 I-YTSGTTGLPKAAVISNHRYYFLGGAIAYQI----GFRTKDRFYTPLPLYHTAGGAMCI 433
I YT GTTG+PK +++ H A A Q+ G D +P++H + +
Sbjct: 185 IPYTGGTTGMPKGVMLT-HFNLA---ANALQLAVATGLSHMDTIVGCMPMFH-SAEFGLV 239
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--NVR 491
+ G V+ F+ ++ KYK T + L++T E ++
Sbjct: 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299
Query: 492 LMFGNG--LRPQIWSEFVDRF------RIAQIGEFYGATE 523
+ + P + + + + + +G TE
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 3e-33
Identities = 61/327 (18%), Positives = 114/327 (34%), Gaps = 13/327 (3%)
Query: 206 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
L++ D ++ K I +T V S ++A F G+ + D V L
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVML 118
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
+L N PEFV +L S G N + + I A D ++ +
Sbjct: 119 LLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQ 178
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
G + + + ++ + D + Y+SG
Sbjct: 179 NDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSG 235
Query: 384 TTGLPKAAVISNHR-----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
TTGLPK +++ H+ + F + D LP++H + L
Sbjct: 236 TTGLPKGVMLT-HKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLR 294
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G ++I KF + + + K TV + + + + E + ++R++
Sbjct: 295 VGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354
Query: 498 -LRPQIWSEFVDRFRIAQIGEFYGATE 523
L ++ +F A++G+ YG TE
Sbjct: 355 PLGKELEDAVNAKFPNAKLGQGYGMTE 381
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 74/339 (21%), Positives = 126/339 (37%), Gaps = 48/339 (14%)
Query: 212 DIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
D+ +A SP K+ ++ + +T + ++ YS++ ANFF+ G+ KGD V L L+
Sbjct: 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
+R +F LGL KLG I H L+ +++ I AG+ + ++ + V E
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYRVGVQDKLIYIYTS 382
G + L E P+ +D + ++S
Sbjct: 180 ECGDIPLKK-----AKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234
Query: 383 GTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTA-----GGAM-CIG 434
GT G PK + Y + A Y YT A +
Sbjct: 235 GTAGFPKMVEHD-NTYPLGHILTA-KYWQNVEDDGLHYT------VADSGWGKCVWGKLY 286
Query: 435 QALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDK 486
I GC V + +F A N KY T C R+L+ +
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT------FCAPPTIYRFLIKEDLSHYNF 340
Query: 487 AHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
+ ++ G L P++++ F++ I ++ E +G TE
Sbjct: 341 ST-LKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGFGQTE 377
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 1e-19
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 209 TIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
++ D+ R A+ SPNK F T +Q++ ++ +A A+G K GD V L+
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLL 71
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--AFIYGAELTDA--VQ 320
+ +LG G I I ++ L I S + L A ++
Sbjct: 72 FAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV----LMIADHIK 127
Query: 321 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 380
+ + + F P S + RS + P +++ +Q Y
Sbjct: 128 KFTADELNTNPKFLKIPAIALESIELNRSSSWQP----TSIKSNDIAF---LQ------Y 174
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSG+T PK ++S+H I + ++ LP +H G CI + G
Sbjct: 175 TSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234
Query: 441 CCVVI 445
++
Sbjct: 235 IQAIM 239
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 46/255 (18%), Positives = 75/255 (29%), Gaps = 36/255 (14%)
Query: 209 TIADIFREHAVRSPNKVIFMF---------ENTEWTAQQVEAYSNRVANFFLAQGLKKGD 259
++ R A P+ F F T Q+ + VA G GD
Sbjct: 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGD 83
Query: 260 SVALMLENRPEFVCLWLGLSKLGVI---TALINHNLRQNSLLHCINIAGVSAFIYGAELT 316
V + E+V +LG + G I ++ + ++ + A + +
Sbjct: 84 RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV 143
Query: 317 DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
D V + D +P + PS +Y +Q
Sbjct: 144 DDVVQHVARRPGESPPSIIEVDLLDLDAPNG--------YTFKEDEYPSTAY---LQ--- 189
Query: 377 IYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430
YTSG+T P V+S N G + LP YH G
Sbjct: 190 ---YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLV 246
Query: 431 MCIGQALIFGCCVVI 445
+ I ++ G V+
Sbjct: 247 IGICAPILGGYPAVL 261
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 5e-13
Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 50/331 (15%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
+ D + A + ++ T Q++ S+ +A F + L V +
Sbjct: 5 DMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT 64
Query: 269 PEFVCLWLGLSKLGVITA----L-INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
+ + + + + + ++ + +L I IA S I E ++ IS
Sbjct: 65 YDML---ATF--VALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS 119
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
+ + + Y + I+TSG
Sbjct: 120 LVS---LSEIESAKLAEMPYERTH------------SVKGDDNYY-I--------IFTSG 155
Query: 384 TTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQAL 437
TTG PK IS H + + + M L
Sbjct: 156 TTGQPKGVQIS-HDNLLSFTNWMIEDAAFDVPKQPQM----LAQPPYSFDLSVMYWAPTL 210
Query: 438 IFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
G + K ++ + + + + + + + K + +
Sbjct: 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270
Query: 495 --GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
G L + +RF A+I YG TE
Sbjct: 271 FDGEELTVSTARKLFERFPSAKIINAYGPTE 301
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-12
Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 68/345 (19%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ + + + A +P++ F++ + + T +Q++ S+ +A++ ++ + +
Sbjct: 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHM 60
Query: 268 RPEFVCLWLGLSKLGVITA------L--------INHNLRQNSLLHCINIAGVSAFIYGA 313
+PE + + LG + A + + +G
Sbjct: 61 QPEMI---INF--LGCVKAGHAYIPVDLSIPADRVQRIAEN---------SGAKLL---- 102
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
L+ ++ V D + +P E Y
Sbjct: 103 -LSATAVTVTDLPVRIVSE-----DNLKDIFFTHKGNTPNP---EHAVKGDENFY----- 148
Query: 374 DKLIYIYTSGTTGLPKAAVISNHR--YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG--- 428
+I YTSG+TG PK I+ + F A+ +T F
Sbjct: 149 --II--YTSGSTGNPKGVQIT-YNCLVSFTKWAVED-FNLQTGQVF----LNQAPFSFDL 198
Query: 429 GAMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPED 485
M I +L+ G + K + + + V L E
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSES 258
Query: 486 KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
N++ G L ++ + ++RF A I YG TE A +
Sbjct: 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE--ATV 301
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-12
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 49/213 (23%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A + + F+E +P+ + + ++++ +NR+A G K
Sbjct: 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGK 513
Query: 258 GDSVALMLENRPEFVCLWLGLSKLG---V----------ITALINHNLRQNSLLHCINIA 304
G VAL + E V LG+ K G + I+ ++ +
Sbjct: 514 GSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLAD-------------S 560
Query: 305 GVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364
+ + E+ + E+ + LF + P P
Sbjct: 561 AAACLLTHQEMKEQAAELPYTG---TTLFIDDQTRFEEQASDP----------ATAIDPN 607
Query: 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+Y + +YTSGTTG PK + + H
Sbjct: 608 DPAY-I--------MYTSGTTGKPKGNITT-HA 630
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 5e-11
Identities = 53/344 (15%), Positives = 99/344 (28%), Gaps = 67/344 (19%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS-VALMLE 266
+ + + HA P F + T Q++ S+R A + + S + +
Sbjct: 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGH 60
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI-----YGAE-----LT 316
P + + LG ++ AG +I +E +
Sbjct: 61 MEPHMI---VSF--LGS--------VK----------AG-HPYIPVDLSIPSERIAKIIE 96
Query: 317 DA-VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ + + + G ++ T S+ + + Y
Sbjct: 97 SSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQ--DQWVKEHETFY------- 147
Query: 376 LIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---G 429
+IY TSG+TG PK IS + + + F
Sbjct: 148 IIY--TSGSTGNPKGVQIS-AANLQSFTDWICADFPVS--GGKIF----LNQAPFSFDLS 198
Query: 430 AMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
M + L G + K + + + + K V + L P +D
Sbjct: 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL 258
Query: 487 AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ G L + ++RF A+I YG TE A +
Sbjct: 259 LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE--ATV 300
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 9e-11
Identities = 48/233 (20%), Positives = 76/233 (32%), Gaps = 35/233 (15%)
Query: 208 LTIADIFREHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
L + D E A K + E T +V + R+ A G+ GD VA
Sbjct: 18 LNLWDFL-ERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 76
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 77 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 136
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP-------SLSYRVGVQDK 375
L V+ F + A L E ++
Sbjct: 137 RGEL-KTVQHFVVMDEKA-----PEGYLAYEEALGEEADPVRVPERAACGMA-------- 182
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYH 425
YT+GTTGLPK V S HR L ++ KD +P++H
Sbjct: 183 ----YTTGTTGLPKGVVYS-HRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 4e-09
Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 57/221 (25%)
Query: 191 QRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
+ +R + T+ F E A P++ +Q+ + +++++
Sbjct: 10 KAIVRMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYL 69
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA------L--------INHNLRQNS 296
L + G + + E E + L L ++ + + RQ
Sbjct: 70 LEHYPQPGVCLGVYGEYSRESI---TCL--LAILLSGHHYLYIDLKQPAAWNAELCRQ-- 122
Query: 297 LLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 356
+ + + P P + P
Sbjct: 123 -------VDCRLILDCSTTPTPANGL--------------PCVPVRHLPAAPASVARP-- 159
Query: 357 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+ ++Y + + +SGTTG PKA + H
Sbjct: 160 ---CFAADQIAY-------INF--SSGTTGRPKAIACT-HA 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 5e-07
Identities = 95/642 (14%), Positives = 170/642 (26%), Gaps = 229/642 (35%)
Query: 8 DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRN-KKGLCTRCEPGEPGVFI------G 60
DNQ A VSRL +P ++ L P V I G
Sbjct: 122 DNQVFAKYNVSRL-----------------QPYLKLRQALL-ELRP-AKNVLIDGVLGSG 162
Query: 61 K------------IVPSNPARAY---LGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTT 105
K + + + L N ++ +++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------------ 204
Query: 106 YNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLV 165
L + +P + + L + + +++ S LLV
Sbjct: 205 -----LLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLK-------SKPYENCLLV 249
Query: 166 MDK-WGYLYFKD-RTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPN 223
+ + + + F L + L + + + D + +
Sbjct: 250 LLNVQ------NAKAWNAF-NLSCKIL------------LTTRFKQVTD-----FLSAAT 285
Query: 224 KVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLENRPEFVCLWLGLSKL 281
++ T E S L + + D L P V +L
Sbjct: 286 TTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---L-----PREVLTTNPR-RL 330
Query: 282 GVITALI-NHNLRQNSLLHCINIAGVSAFI---YGAELTDAVQEISTSLGSNVKLFSWSP 337
+I I + ++ H +N ++ I +++ L +F P
Sbjct: 331 SIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VF---P 382
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL----PKAAVI 393
S+ +P + LS + +V S + V +KL L PK + I
Sbjct: 383 P----SAHIP-TILLSLIWFDVIKSDVMV-----VVNKLH------KYSLVEKQPKESTI 426
Query: 394 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF---- 449
S Y + K L H + I K F
Sbjct: 427 SIPSIYLE---------LKVKLENEYAL---H----RSIVDH-------YNIPKTFDSDD 463
Query: 450 ----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
YF Y +IG + L E PE +F +
Sbjct: 464 LIPPYLDQYF-----Y-----SHIG----HHLKNIEHPERMT-----LF-----RMV--- 496
Query: 506 FVD-RF---RIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL--FIRC 559
F+D RF +I + A+ + L + I P Y R + +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTL-----QQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 560 LREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEE 601
L ++E K DL ++ L + ++EE
Sbjct: 552 LPKIE-ENLICSKYTDL---------LRIALMA-EDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 74/502 (14%), Positives = 149/502 (29%), Gaps = 172/502 (34%)
Query: 151 FEIGDSAFLSGDLL--VMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDL 208
FE G+ + D+L D + + + +Q + + L
Sbjct: 9 FETGEHQYQYKDILSVFEDA----FVDN--------FDCKDVQDMPKSI----------L 46
Query: 209 TIADIFREHAVRSPN---KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+ +I +H + S + + +F WT + + + F+ + L+
Sbjct: 47 SKEEI--DHIIMSKDAVSGTLRLF----WT---LLSKQEEMVQKFVEEVLRI-------- 89
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N +L +S I RQ S++ T E
Sbjct: 90 -NYK-----FL-MSP-------IKTEQRQPSMM-----------------TRMYIEQRDR 118
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPL---LSEVPTSPPSLSYRVGVQDKLIYIYTS 382
L ++ ++F+ V R Q L L E+ P K + I
Sbjct: 119 LYNDNQVFA--KY------NVSRLQPYLKLRQALLEL--RP----------AKNVLID-- 156
Query: 383 GTTGLPK----AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
G G K V +++ + + ++I F+ L ++ + + Q L
Sbjct: 157 GVLGSGKTWVALDVCLSYK---VQCKMDFKI-------FWLNLKNCNSPETVLEMLQKL- 205
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVRLM 493
I +++ + S K + Q R LL + NV+
Sbjct: 206 ---LYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPYENCLLVLL---NVQ-- 254
Query: 494 FGNGLRPQIWSEFVDRFRI------AQIGEFYGAT-------EGMAAILDINKSLDVSAV 540
+ W+ F +I Q+ +F A + + L ++ +
Sbjct: 255 -----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 541 SEGIK-KALPSYAR---PLFIRCLREV--EMTGTYK-LKKLDLQKEGFDPNVIQDRLYYL 593
+ + LP P + + E + T+ K ++ K +I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---TIIE------ 360
Query: 594 SSKGVYEELTP----EVYKDLV 611
SS L P +++ L
Sbjct: 361 SS---LNVLEPAEYRKMFDRLS 379
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 59/216 (27%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENT----------EWTAQQVEAYSNRVANFFLAQGL 255
+ + A P +WT +++ +N+VAN + L
Sbjct: 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL 77
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI----- 310
G ++A+ L+ + +G+ ++ +G + ++
Sbjct: 78 -HGRAIAVSLDRSLIAF---AII--VGI--------MK----------SG-NTYVPIEAG 112
Query: 311 YGAE-----LTDAVQEI---STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+ L D+ + + V+L + D+ + + + +
Sbjct: 113 LPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNY 172
Query: 363 PPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P +L Y +YTSG+TG PK +S
Sbjct: 173 PENL---------DAYLLYTSGSTGTPKGVRVS-RH 198
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 96
Query: 266 ENRPEFV 272
E +
Sbjct: 97 EKSIDLF 103
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.92 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 99.56 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 99.41 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 99.29 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 98.84 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 98.51 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 98.35 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 98.27 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 98.13 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 97.9 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 97.87 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 97.87 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 97.84 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 97.77 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 97.74 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 97.67 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 97.67 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 97.66 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 97.59 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 97.59 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 97.55 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 97.53 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 97.53 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 97.5 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 97.49 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 97.45 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.44 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 97.38 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.35 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 97.34 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 97.29 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 97.19 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 97.19 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 97.16 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 97.06 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 96.88 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 96.87 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 96.86 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 96.63 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 95.35 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 94.74 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.55 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 89.99 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 87.03 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 85.63 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-77 Score=715.01 Aligned_cols=549 Identities=15% Similarity=0.117 Sum_probs=434.8
Q ss_pred EEEeccCCCccccCCCC--CcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-------ccC
Q psy8155 29 IIRVDPVTSEPIRNKKG--LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-------LSD 99 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~--~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-------~~~ 99 (617)
..+.|+++|+|++||.. .+. +++||+|+||||+|++++++.||.++|+++++..+++++||++|| ..+
T Consensus 270 tg~~dvv~G~pvsgR~~~~~~~---~~~vG~fvntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~~~ 346 (1304)
T 2vsq_A 270 QQSGDLAFGTVVSGRPAEIKGV---EHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQP 346 (1304)
T ss_dssp HTCSEEEEEEEECCCCTTSTTG---GGCCSSCCEEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSSCS
T ss_pred cCCCCEEEEEEeCCCCccchhh---hcccccceeEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhCCC
Confidence 45679999999999986 666 999999999999999999999999999999999999999999999 234
Q ss_pred CCCccccCcCCcc--c-c----CCCCccccccCCCCCccccccccccccc----chhhhhhhhhccchhhhcccEEEEec
Q psy8155 100 PPKNTTYNKKGLC--S-R----CEPGVFIGKIVPSNPARAYLGYVNEKDS----AKKIFTDVFEIGDSAFLSGDLLVMDK 168 (617)
Q Consensus 100 ~~r~~~~~~l~~~--~-~----~~~gl~~~~~~~~~~~~~dl~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~ 168 (617)
|.++++++..... . . ...|+.+........++|||++.+.+.+ ..+|++++|+.++++++..+|..++
T Consensus 347 ~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL- 425 (1304)
T 2vsq_A 347 KLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAI- 425 (1304)
T ss_dssp SSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECSSSCEEEEEEETTTSCHHHHHHHHHHHHHHH-
T ss_pred cccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecCCcEEEEEEECCccCCHHHHHHHHHHHHHHH-
Confidence 4455444332211 0 0 0124434332223678999999887644 3589999999999999999999888
Q ss_pred cccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHH
Q psy8155 169 WGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVAN 248 (617)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~ 248 (617)
..++.+|+.++.++++++++|+++++..|+.+.... +..+++++|+++++++|+++|++++++++||+||+++++++|+
T Consensus 426 ~~l~~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~ 504 (1304)
T 2vsq_A 426 QQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAH-ETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIAR 504 (1304)
T ss_dssp HHHHHSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCC-CCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHH
T ss_pred HHhccCccccccccCCCCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHH
Confidence 677889999999999999999998887776654443 3479999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC
Q psy8155 249 FFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328 (617)
Q Consensus 249 ~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~ 328 (617)
+|++.|+++|++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.+..+.+. .++.
T Consensus 505 ~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~ 580 (1304)
T 2vsq_A 505 RLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPY 580 (1304)
T ss_dssp HHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCC
T ss_pred HHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987543221 1222
Q ss_pred CeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH
Q psy8155 329 NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ 408 (617)
Q Consensus 329 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~ 408 (617)
....+.+++.. .. ... .. .......|+++|||+|||||||+||||+++|+++.+. .+....
T Consensus 581 ~~~~~~~~~~~--------------~~-~~~-~~--~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~ 641 (1304)
T 2vsq_A 581 TGTTLFIDDQT--------------RF-EEQ-AS--DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDY 641 (1304)
T ss_dssp CSEEEESSCGG--------------GG-GSC-SS--CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCS
T ss_pred CCcEEEecccc--------------cc-ccc-cC--CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHh
Confidence 22333333210 00 111 11 1112457899999999999999999999999999986 555567
Q ss_pred hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC
Q psy8155 409 IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED 485 (617)
Q Consensus 409 ~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 485 (617)
++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.|++++||++.++|++++.|.+.. ..
T Consensus 642 ~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~ 717 (1304)
T 2vsq_A 642 MAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---ED 717 (1304)
T ss_dssp SCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SH
T ss_pred cCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hh
Confidence 78899999999999999887 5899999999999999874 79999999999999999999999999998643 22
Q ss_pred ccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe---CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEe
Q psy8155 486 KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL---DINKSLDVSAVSEGIKKALPSYARPLFIRCL 560 (617)
Q Consensus 486 ~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~ 560 (617)
.+++||.++ ||+++++++++|.+.++..+++|.|||||++..+. .......... ..++..+|. ..+.++
T Consensus 718 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~--~~iG~p~~~----~~~~i~ 791 (1304)
T 2vsq_A 718 WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS--LPIGKPISN----ASVYIL 791 (1304)
T ss_dssp HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS--CCCBEECTT----EEEEEE
T ss_pred cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC--CCCceeeCC----CEEEEE
Confidence 467888776 89999999999999988668999999999964332 1110000000 001111111 123333
Q ss_pred ec------------c----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCc
Q psy8155 561 RE------------V----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNI 615 (617)
Q Consensus 561 ~~------------l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~ 615 (617)
++ + |--..|++++..++++.| .||+||| +|++++| |+|+|+||+|||||++|+
T Consensus 792 d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD-l~~~~~d-G~l~~~GR~d~qvki~G~ 869 (1304)
T 2vsq_A 792 NEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD-LARWLPD-GTIEYAGRIDDQVKIRGH 869 (1304)
T ss_dssp CTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE-EEEECTT-SCEEEEEEGGGEEEETTE
T ss_pred CCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC-eEEEcCC-CeEEEEcCCCCEEEECCE
Confidence 22 1 334567888887775544 1488999 9999998 999999999999999999
Q ss_pred CC
Q psy8155 616 RL 617 (617)
Q Consensus 616 ~v 617 (617)
||
T Consensus 870 ri 871 (1304)
T 2vsq_A 870 RI 871 (1304)
T ss_dssp EE
T ss_pred ee
Confidence 86
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=498.87 Aligned_cols=389 Identities=16% Similarity=0.242 Sum_probs=310.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
...|+.++|+++++++|+++|+++.++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
||++|.++.+++.+++++++++++|++++.. +.+..+...++....++..++. ..+.++.....
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 171 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHT 171 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhccc
Confidence 9999999999999999999999999987532 2334444444433334443321 11222222111
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHhHc
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQALIF 439 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L~~ 439 (617)
.. ...+...++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++.. +++.+|+.
T Consensus 172 ~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 172 EP--VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp CC--CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cc--cccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 11 1123457899999999999999999999999999999999888999999999999999999988644 68899999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 440 G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.++. +++|
T Consensus 250 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~ 328 (539)
T 1mdb_A 250 GGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQ 328 (539)
T ss_dssp TCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEEE
Confidence 9999999999999999999999999999999999999876544455788999886 888999999999999976 7999
Q ss_pred cccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh----
Q psy8155 518 FYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ---- 577 (617)
Q Consensus 518 ~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~---- 577 (617)
.||+||+.+.+...... .......++..+|.+. .+.++++ + |....|+.++.+.+
T Consensus 329 ~YG~TE~~~~~~~~~~~--~~~~~~~~G~p~~~~~---~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 403 (539)
T 1mdb_A 329 VFGMAEGLVNYTRLDDP--EEIIVNTQGKPMSPYD---ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF 403 (539)
T ss_dssp EEECTTSCEEECCTTSC--HHHHHHCCCEESSTTC---EEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHB
T ss_pred EEcCCCCcccccCCCCc--HHhcCCCCCcccCCCc---eEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhc
Confidence 99999976554432211 1111112222232211 2333321 1 23335666555443
Q ss_pred -hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 -KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 -~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 404 ~~~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 440 (539)
T 1mdb_A 404 TEDGF--YRTGD-IVRLTRD-GYIVVEGRAKDQINRGGEKV 440 (539)
T ss_dssp CTTSC--EEEEE-EEEECTT-SCEEEEEEGGGCEECSSCEE
T ss_pred cCCCC--eecCc-eEEECCC-CcEEEeccccceEEECCEEE
Confidence 5677 88999 9999998 99999999999999999986
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-58 Score=504.17 Aligned_cols=392 Identities=19% Similarity=0.266 Sum_probs=316.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+...|++++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~G 98 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 44589999999999999999999996 6899999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|+||.++.+++.+++++++++++|++....+.+....... ..+++.++..... ...+.++.......
T Consensus 99 av~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 169 (536)
T 3ni2_A 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDG-------CLHFSELTQADENE 169 (536)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TCEEEESSCCCTT-------CEETHHHHTSCGGG
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--CceEEEecCCCCC-------ccCHHHHhhccccc
Confidence 99999999999999999999999999999998888777665543 3456666543221 33344444332221
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
. .....+++++|||+|||||||+||||+++|+++.+.+.+... .+++.++|++++.+|++|+.++...++.+|.
T Consensus 170 ~--~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~ 247 (536)
T 3ni2_A 170 A--PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLR 247 (536)
T ss_dssp C--CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHH
T ss_pred c--ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHh
Confidence 1 123457899999999999999999999999999988776554 3568899999999999999997677889999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.|+++++.+++++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.++..+++
T Consensus 248 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 327 (536)
T 3ni2_A 248 VGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLG 327 (536)
T ss_dssp HTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEE
T ss_pred cCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCcc
Confidence 99999999999999999999999999999999999999998776677889999887 8889999999999999767899
Q ss_pred ccccccccceEEeC----CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhhHH
Q psy8155 517 EFYGATEGMAAILD----INKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKKLD 575 (617)
Q Consensus 517 n~YG~TE~~~~v~~----~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~ 575 (617)
|.||+||+...+.. ........ ...++..+|.. .+.+++. + |....|+.++..
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~G~~~~~~----~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~ 401 (536)
T 3ni2_A 328 QGYGMTEAGPVLAMCLAFAKEPFDIK--PGACGTVVRNA----EMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPE 401 (536)
T ss_dssp EEEECGGGSSEEEECGGGSSSCCCCC--TTCCCEECSSC----EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred ccccccccchhhhcccccCCccccCC--CCCeeEeCCCc----EEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChh
Confidence 99999999654331 11110000 00011122211 2333331 1 333456665544
Q ss_pred Hh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 LQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+ .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 402 ~t~~~~~~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 444 (536)
T 3ni2_A 402 ATSRTIDKEGW--LHTGD-IGYIDDD-DELFIVDRLKELIKYKGFQV 444 (536)
T ss_dssp HHHHHBCTTSC--EEEEE-EEEECTT-SCEEEEEECSCCEEETTEEE
T ss_pred HHHhhccCCCc--eEccc-EEEEcCC-ceEEEEecccceEEECCEEE
Confidence 43 5677 88999 9999998 99999999999999999986
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-58 Score=513.25 Aligned_cols=376 Identities=15% Similarity=0.081 Sum_probs=295.4
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
......|++++|+++|+++|+++|++++++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaG 101 (620)
T 4dg8_A 22 DLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101 (620)
T ss_dssp SGGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++|||+||.+|.+++.++++++++++++++....... .....+.+.. . ....
T Consensus 102 a~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~~~~~-----------------~---~~~~ 153 (620)
T 4dg8_A 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCVPVRH-----------------L---PAAP 153 (620)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEEEGGG-----------------C---CCCC
T ss_pred CEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCceeeecc-----------------C---CcCC
Confidence 9999999999999999999999999999765432110 0011111110 0 0111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcE
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~ 442 (617)
.....+...++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+. +++|.+|+.|++
T Consensus 154 ~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~ 231 (620)
T 4dg8_A 154 ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGC 231 (620)
T ss_dssp CCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCE
T ss_pred ccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCE
Confidence 111223456899999999999999999999999999887766 557789999999999999999984 889999999999
Q ss_pred EEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 443 VVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 443 lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
+++.+ .+++..+++.|+++++|++.++|++++.|++.. ...+++||.++ ||+++++++++|.+.++..+++|.
T Consensus 232 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 308 (620)
T 4dg8_A 232 CVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNG 308 (620)
T ss_dssp EEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEee
Confidence 99975 589999999999999999999999999998643 34578899877 889999999999998877789999
Q ss_pred ccccccceEEe---CCCCCCCHHHHHHHHhhcCCC---------------CCcCcEEEEeecccCCccchhhhHHHhhcC
Q psy8155 519 YGATEGMAAIL---DINKSLDVSAVSEGIKKALPS---------------YARPLFIRCLREVEMTGTYKLKKLDLQKEG 580 (617)
Q Consensus 519 YG~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~---------------~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g 580 (617)
||+||+..... ......... ...++..+|. ...+..+.+-+ |....|+.++..++++.
T Consensus 309 YG~TE~~~~~~~~~~~~~~~~~~--~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G--~~v~~GY~~~p~~t~~~ 384 (620)
T 4dg8_A 309 YGPTENTTFTCCHVVTDDDLEED--DIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFG--AGLAQGYRNDAARTRAS 384 (620)
T ss_dssp ECCGGGCSCSEEEECCTGGGGSS--SCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEE--TTCCSEETTCHHHHHHH
T ss_pred EchhhhhhheEEEeccccccCCC--CCCceecccCcEEEEECccCCCCCCCCCceEEEEec--cccccccCCChhhhhhh
Confidence 99999854322 111000000 0001111111 11112222222 33346777777776553
Q ss_pred C----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 581 F----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 581 ~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
| .||+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 385 f~~~p~~~~~~~~yrTGD-l~~~~~d-G~l~~~GR~dd~Ik~~G~ri 429 (620)
T 4dg8_A 385 FVELPYRGRLLRAYRTGD-RARYDEQ-GRLRFIGRGDGQVKLNGYRL 429 (620)
T ss_dssp EEEEEETTEEEEEEEEEE-EEEECTT-SCEEEEECSSSEEEETTEEE
T ss_pred hccCCCCCCCceEEeCCC-EEEECCC-CeEEEEccCCCEEEECCEEc
Confidence 3 2488999 9999998 99999999999999999986
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-57 Score=494.62 Aligned_cols=395 Identities=15% Similarity=0.186 Sum_probs=304.5
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
...+.|+.++|+++++++|+++|++++++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (617)
+++|++|.++.+++.+++++++++++|++.... .....+.........++..+.... ...+.+....
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 177 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT--------DFGLLDWIET 177 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT--------SEEHHHHHHS
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc--------ccchhhhhhc
Confidence 999999999999999999999999999987653 344444444444445555543211 1122222222
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHh
Q psy8155 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQAL 437 (617)
Q Consensus 359 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L 437 (617)
.... ........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++.. +++.+|
T Consensus 178 ~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l 256 (544)
T 3o83_A 178 PAET-FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVL 256 (544)
T ss_dssp CCSS-CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred cccc-ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHH
Confidence 1111 11113457899999999999999999999999999999999999999999999999999999887643 688999
Q ss_pred HcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccc
Q psy8155 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQI 515 (617)
Q Consensus 438 ~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l 515 (617)
..|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.+. |+++++++.++|.+.++. ++
T Consensus 257 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~~ 335 (544)
T 3o83_A 257 HAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KL 335 (544)
T ss_dssp HTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-EE
T ss_pred HcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-cE
Confidence 999999999999999999999999999999999999999987666666788999887 888999999999999976 79
Q ss_pred cccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh--
Q psy8155 516 GEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ-- 577 (617)
Q Consensus 516 ~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~-- 577 (617)
+|.||+||+...+..... ........++..+++. ..+.++++ + |....|+.++...+
T Consensus 336 ~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~p~~~~---~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDD--SDEQIFTTQGRPISSD---DEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410 (544)
T ss_dssp EEEEECTTSCEEECCTTS--CHHHHHHCCCEESCTT---CEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHH
T ss_pred EeeeccccccceeecCCC--chhhccCCCceecCCC---cEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhh
Confidence 999999998755542221 1111111122222111 12333332 1 33345666555444
Q ss_pred ---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 411 ~f~~~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (544)
T 3o83_A 411 VFDEDNY--YYSGD-LVQRTPD-GNLRVVGRIKDQINRGGEKI 449 (544)
T ss_dssp HBCTTCC--EEEEE-EEEECTT-SCEEEEEEEC----------
T ss_pred hCCCCCC--eEcCC-EEEEcCC-CCEEEEeecCCEEEeCCEEE
Confidence 5677 88999 9999998 99999999999999999997
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-58 Score=499.96 Aligned_cols=395 Identities=22% Similarity=0.320 Sum_probs=306.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCc--eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHH
Q psy8155 197 LWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274 (617)
Q Consensus 197 ~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~--~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva 274 (617)
++..........|+.++|.++++++|+++|+++.++ ++||+||+++++++|++|+++|+++|++|+|+++|+++++++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 5 HHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp -------CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred ccccCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 445556667789999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 275 ~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
+|||+++|+++||+||.+|.+++.+++++++++++|++....+.+..+.........++.+.. ...+.+
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 153 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG-----------ADSLAE 153 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE-----------HHHHHH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC-----------cccHHH
Confidence 999999999999999999999999999999999999999888877776554332211111110 111223
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
.........+ .....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++
T Consensus 154 ~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~ 230 (517)
T 3r44_A 154 RLRSAAADEP--AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVI 230 (517)
T ss_dssp HHHHCCCCCC--CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHH-HHHH
T ss_pred HhhccCcCCC--CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH-HHHH
Confidence 3322222221 234578999999999999999999999999999999999999999999999999999999996 4444
Q ss_pred HHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 435 QALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|.+.+.....++++||.++ ||++++++.++|.+. +.
T Consensus 231 ~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~ 309 (517)
T 3r44_A 231 FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NI 309 (517)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TC
T ss_pred HHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CC
Confidence 556699999999999999999999999999999999999999987655556788999887 888999999999887 54
Q ss_pred ccccccccccccceEEe--CCCC-CCCHHHHHHHHhhcCCCCC----------c---CcEEEEeecccCCccchhhhHHH
Q psy8155 513 AQIGEFYGATEGMAAIL--DINK-SLDVSAVSEGIKKALPSYA----------R---PLFIRCLREVEMTGTYKLKKLDL 576 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~--~~~~-~~~~~~l~~~l~~~Lp~~~----------~---P~~~~~~~~lP~t~~GK~dr~~L 576 (617)
+++|.||+||++.... .... ..... .+...+|... + +..+.+.+ |....|+.++..+
T Consensus 310 -~~~~~YG~TE~~~~~~~~~~~~~~~~~~----~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g--~~v~~GY~~~p~~ 382 (517)
T 3r44_A 310 -EVVQGYALTESCGGGTLLLSEDALRKAG----SAGRATMFTDVAVRGDDGVIREHGEGEVVIKS--DILLKEYWNRPEA 382 (517)
T ss_dssp -EEEEEEECGGGTTCEEEECGGGTTTTTT----CCBEECTTEEEEEECTTSCEESSEEEEEEEEE--TTSCSEETTCHHH
T ss_pred -cEEEeecccccccceeecCCccccccCC----CCCcCCCCeEEEEECCCCCCCCCCCeEEEEeC--cchhhhhCCChhh
Confidence 8999999999954332 1111 00000 0111111100 0 11122211 4445677777766
Q ss_pred hh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 577 QK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 577 ~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++ +|| |+||| +|++|+| |+++|+||+|||||++|+||
T Consensus 383 t~~~f~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 423 (517)
T 3r44_A 383 TRDAFDNGW--FRTGD-IGEIDDE-GYLYIKDRLKDMIISGGENV 423 (517)
T ss_dssp HHHTEETTE--EEEEE-EEEECTT-SCEEEEECGGGCEEETTEEE
T ss_pred hHhhhcCCC--Eecce-eEEEcCC-eeEEEecCCcCEEEECCEEE
Confidence 65 455 88999 9999998 99999999999999999986
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=492.11 Aligned_cols=396 Identities=16% Similarity=0.154 Sum_probs=298.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEE---E--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFM---F--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~---~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
...|+.++|.++++++|+++|++ + .++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 45799999999999999999976 4 368999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
+|+++||+||.++.+++.+++++++++++|++.+..+.+.......+....++.++.... ......+.++.....
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMYTFVTSHL 172 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHHHHHHHHC
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHHHHhhccc
Confidence 999999999999999999999999999999999988888888777776667777654321 111333444333211
Q ss_pred CC-----CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 361 TS-----PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 361 ~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
.. .........++++|||+|||||||.||||+++|+++.+.+.+.... +++.+++++++.+|++|+.++ +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~ 251 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FT 251 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH-HH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHH-HH
Confidence 10 0111112245789999999999999999999999999888776655 568899999999999999996 67
Q ss_pred HHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHc
Q psy8155 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRF 510 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~ 510 (617)
++.+|+.|+++++.+++++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.+
T Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 88899999999999999999999999999999999999999999988776667789999887 8889999999999999
Q ss_pred CcccccccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCC---------------CcCcEEEEeecccCCccchhhhH
Q psy8155 511 RIAQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVEMTGTYKLKKL 574 (617)
Q Consensus 511 ~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP~t~~GK~dr~ 574 (617)
+...++|.||+||+...+. .+....... .+...+|.. ..+..+.+-+ |....|+.++.
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~----~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~~ 405 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPG----AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG--PMIMSGYVNNP 405 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTT----EEEEECTTCEEEEECTTTCCBCCTTCCEEEEEES--TTSCSEETTCH
T ss_pred CCCccccccCcCccccceecCCCCCCCCC----CcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeC--CCcchhhcCCh
Confidence 8766999999999976554 221111110 112222221 1111222221 33345666554
Q ss_pred HHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+ .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 406 ~~t~~~~~~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (550)
T 3rix_A 406 EATNALIDKDGW--LHSGD-IAYWDED-EHFFIVDRLKSLIKYKGYQV 449 (550)
T ss_dssp HHHHHHBCTTSC--EEEEE-EEEECTT-CCEEEC--------------
T ss_pred hhhhhhcCCCCC--eecCc-EEEEeCC-ceEEEEecchheeEECCEEE
Confidence 443 5677 78999 9999998 99999999999999999997
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-57 Score=496.15 Aligned_cols=391 Identities=15% Similarity=0.188 Sum_probs=302.9
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECC--------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFEN--------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~--------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~l 276 (617)
.+..|+.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+++|++|+|+++|++++++++|
T Consensus 16 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 95 (549)
T 3g7s_A 16 YPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIY 95 (549)
T ss_dssp CCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 356799999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhh
Q psy8155 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 356 (617)
Q Consensus 277 A~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 356 (617)
||+++|+++||+||.+|.+++.+++++++++++|++....+.+.......+ ...++..+.. ...+.++.
T Consensus 96 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~ 164 (549)
T 3g7s_A 96 ALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------VNSLSEVM 164 (549)
T ss_dssp HHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS----------SSCHHHHH
T ss_pred HHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC----------CcCHHHHH
Confidence 999999999999999999999999999999999999998888777766554 2344544421 33455554
Q ss_pred ccCCCCCCCCCCCCCC-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 357 SEVPTSPPSLSYRVGV-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 357 ~~~~~~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
......... ....+ +++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++.. ++.
T Consensus 165 ~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~ 241 (549)
T 3g7s_A 165 DSGSEDFEN--VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNL 241 (549)
T ss_dssp HHSCSCCCC--CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTT
T ss_pred hcCcccccc--ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHH
Confidence 443322111 12334 89999999999999999999999999999999999999999999999999999998644 788
Q ss_pred HhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC--CccCceeeee--ccCCCHHHHHHHHHH--
Q psy8155 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE--DKAHNVRLMF--GNGLRPQIWSEFVDR-- 509 (617)
Q Consensus 436 ~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~--Ge~l~~~~~~~~~~~-- 509 (617)
++..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... .+++++|.+. |+++++++.++|.+.
T Consensus 242 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~ 321 (549)
T 3g7s_A 242 MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAA 321 (549)
T ss_dssp HHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHH
T ss_pred HHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987643322 4678999887 888999999999988
Q ss_pred --cCc--ccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-------------c----ccCCcc
Q psy8155 510 --FRI--AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-------------E----VEMTGT 568 (617)
Q Consensus 510 --~~~--~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-------------~----lP~t~~ 568 (617)
++. .+++|.||+||+...+....... .. -...+...+|.. .+.+++ + =|....
T Consensus 322 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~-~~~~~G~p~~~~----~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~ 395 (549)
T 3g7s_A 322 EKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LD-KSTTQGVPMSDI----ELKVISLEDGRELGVGESGEIVIRGPNIFK 395 (549)
T ss_dssp HHSSCTTCEEEEEEECGGGSSEEEECCGGG-GG-GTTSCCEECTTC----EEEEECSSSCCEECTTCCEEEEEESTTSCS
T ss_pred hhcCCccccccceEeccccchhhhcCCccc-cC-cCCCccccCCCC----EEEEEeCCCCcCCCCCCceEEEEECcchhh
Confidence 552 48999999999976555211100 00 000011112211 233332 1 134446
Q ss_pred chhhhHHHhhcCCC-------CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLDLQKEGFD-------PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~L~~~g~~-------~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.++...+++.|. ||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 396 GY~~~~~~t~~~f~~~~~g~~~~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (549)
T 3g7s_A 396 GYWKREKENQECWWYDEKGRKFFRTGD-VGFIDEE-GFLHFQDRVKEVIKYKGYTI 449 (549)
T ss_dssp EETTCTTGGGTSEEECTTCCEEEEEEE-EEEECTT-SCEEEEEEC-----------
T ss_pred hhCCChhhhhhhhhccCCCCceEccCc-EEEEcCC-ceEEEeccccceEEECCEEE
Confidence 67766666544331 488999 9999998 99999999999999999997
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=482.54 Aligned_cols=383 Identities=19% Similarity=0.227 Sum_probs=295.1
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.+.|+.++|+++|+++|+++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 83 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred CcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
||+||.+|.+++.+++++++++++|++.+..+.+......++....++.+++.. ..+.++...... .+.
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~~ 152 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS----------GPFAPFKDLASD-TPF 152 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----------SSCEEGGGTCCC-SCC
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----------cChhhHhhccCC-CCC
Confidence 999999999999999999999999999998877666555665556666665421 123333221111 112
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
..+...+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++.+++.|++.++
T Consensus 153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~~~~~g~~~~ 231 (509)
T 3ivr_A 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVI 231 (509)
T ss_dssp CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEE
T ss_pred CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHH-HHHHHHHHhCCcEEE
Confidence 2235678999999999999999999999999999999999999999999999999999999996 555566666777777
Q ss_pred cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 446 ~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
...+++..+++.|+++++|++..+|+++..|++.. ....++++|.+. |++ +..++|.+.++..+++|.||+||
T Consensus 232 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE 306 (509)
T 3ivr_A 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSE 306 (509)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGG
T ss_pred ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccc
Confidence 66899999999999999999999999999999876 345678999887 443 88999999996678999999999
Q ss_pred cceEEe--CCCCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh----cCCCC
Q psy8155 524 GMAAIL--DINKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK----EGFDP 583 (617)
Q Consensus 524 ~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~----~g~~~ 583 (617)
+..... ....... .+...+|.. ..+..+.+.+ |....|+.++..+++ +||
T Consensus 307 ~~~~~~~~~~~~~~~------~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g--~~~~~gY~~~~~~t~~~f~~g~-- 376 (509)
T 3ivr_A 307 TSGLSTFAPYRDRPK------SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG--PTVFKGYWNNAAATQHAFRNGW-- 376 (509)
T ss_dssp GTEEEEEEEGGGSTT------SCCEECTTCEEEEECTTSCBCCTTCCEEEEEES--TTSCCEETTCHHHHHHHTGGGS--
T ss_pred cccccccCccccCCC------cccccCCCcEEEEECCCCCCCCCCCceEEEEec--CCccccccCCHHHhHHHhhcCC--
Confidence 965443 1111000 022222221 0111222221 344456666555543 567
Q ss_pred CccCCeeEEEeCCCceeeCCHHH--HHHHhcCCcCC
Q psy8155 584 NVIQDRLYYLSSKGVYEELTPEV--YKDLVQGNIRL 617 (617)
Q Consensus 584 ~~TGD~lg~~d~d~G~l~i~GR~--~d~I~~~G~~v 617 (617)
|+||| +|++|+| |+++|+||. ||+||++|+||
T Consensus 377 ~~TGD-l~~~~~d-G~l~~~GR~d~~d~ik~~G~~v 410 (509)
T 3ivr_A 377 HHTGD-MGRFDAD-GYLFYAGRAPEKELIKTGGENV 410 (509)
T ss_dssp EEEEE-EEEECTT-SCEEEEEEC-------------
T ss_pred ccccc-EEEECCC-ceEEEeCCCCcceeEEECCEEE
Confidence 88999 9999998 999999999 99999999997
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-56 Score=483.37 Aligned_cols=382 Identities=20% Similarity=0.229 Sum_probs=296.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.|+.++|+++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47999999999999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEE--ccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC---C
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIY--GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV---P 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 360 (617)
||+||.++.+++.+++++++++++|+ +.+..+.+. ...+ ..+++.+++ +.... .
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-~~~~~~~~~-----------------~~~~~~~~~ 140 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-GARIIFLGD-----------------LVRDGEPYS 140 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-CCEEEEGGG-----------------TEETTEECC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-cceeEEecc-----------------hhhcCcccc
Confidence 99999999999999999999999999 766554431 1111 233333221 11110 0
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCC--CCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF--RTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
...+.......++++|||+|||||||+||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++...++.+|.
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 220 (504)
T 1t5h_X 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (504)
T ss_dssp CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHH
T ss_pred cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHH
Confidence 001111134578999999999999999999999999999999888888888 889999999999999997677889999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
.|+++++.+.+++..+++.|+++++|++.++|++++.|++... ....++++||.++ ||++++++.++|.+.++. +
T Consensus 221 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~ 299 (504)
T 1t5h_X 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-E 299 (504)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-E
T ss_pred cCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-c
Confidence 9999999999999999999999999999999999999987642 2344678999887 889999999999999986 7
Q ss_pred ccccccccccceEEeCC-CCCCCHH------H--HHHHHh---hcCCCCCcCcEEEEeecccCCccchhhhHHHhh----
Q psy8155 515 IGEFYGATEGMAAILDI-NKSLDVS------A--VSEGIK---KALPSYARPLFIRCLREVEMTGTYKLKKLDLQK---- 578 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~~-~~~~~~~------~--l~~~l~---~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~---- 578 (617)
++|.||+||+...+... ....... + +.+... +.+|. ..+..+.+. .-|....|+.++...++
T Consensus 300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~-g~~GEl~v~-gg~~~~~GY~~~~~~t~~~f~ 377 (504)
T 1t5h_X 300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVAN-GEEGELIVA-ASDSAFVGYLNQPQATAEKLQ 377 (504)
T ss_dssp EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCT-TCCEEEEEE-CCTTSCCCBTTCHHHHHHHEE
T ss_pred eeeeeccccccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCC-CCcceEEEe-CCceeeceecCCchhhhhhhc
Confidence 99999999994333211 0000000 0 000000 11221 112223322 12333457776655543
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 378 ~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 412 (504)
T 1t5h_X 378 DGW--YRTSD-VAVWTPE-GTVRILGRVDDMIISGGENI 412 (504)
T ss_dssp TTE--EEEEE-EEEECTT-SCEEEEEEGGGCEEETTEEE
T ss_pred CCc--cccCc-EEEECCC-ceEEEeCcccCEEEECCEEE
Confidence 577 88999 9999998 99999999999999999986
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-56 Score=496.30 Aligned_cols=391 Identities=16% Similarity=0.202 Sum_probs=309.8
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
....+.|++++|+++++ ||++|++++++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567899999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
++|||+||.+|.+++.++++++++++++++.... ..........+....+...+... ...+.+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 170 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG---------EHNLQDAIN 170 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS---------TTBHHHHHH
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc---------ccchhhhhc
Confidence 9999999999999999999999999999987653 33344444444433444443321 112223322
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHH-HHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA-MCIGQA 436 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~~ 436 (617)
...... ......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. ++++.+
T Consensus 171 ~~~~~~--~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (617)
T 3rg2_A 171 HPAEDF--TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248 (617)
T ss_dssp SCCSSC--CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred cccccc--CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHH
Confidence 221111 12344678999999999999999999999999999999999999999999999999999887753 368999
Q ss_pred hHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 437 L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
|+.|+++++.+..++..+++.|+++++|++.++|+++..+++.... ....+++||.++ ||++++++.++|.+.++.
T Consensus 249 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 328 (617)
T 3rg2_A 249 FLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC 328 (617)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999998765322 223678999886 899999999999999876
Q ss_pred ccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCc-EEEEeec------------c----cCCccchhhhHH
Q psy8155 513 AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL-FIRCLRE------------V----EMTGTYKLKKLD 575 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~-~~~~~~~------------l----P~t~~GK~dr~~ 575 (617)
+++|.||+||+...+..... ........+...++ |. .+.++++ + |....|+.++..
T Consensus 329 -~~~~~YG~tE~~~~~~~~~~--~~~~~~~~~G~p~~----~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~ 401 (617)
T 3rg2_A 329 -QLQQVFGMAEGLVNYTRLDD--SAEKIIHTQGYPMC----PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQ 401 (617)
T ss_dssp -EEEEEEEETTEEEEECCTTS--CHHHHHHCCCEESC----TTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHH
T ss_pred -cEEEEeccCcceeecccCCC--cccccccCCCccCC----CCceEEEECCCCCCCCCCCceEEEecCccccchhcCChh
Confidence 79999999998765543221 11111111111111 11 2333322 1 334567777766
Q ss_pred Hhh-----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 LQK-----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 L~~-----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+++ ++| |+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 402 ~t~~~f~~~~~--yrTGD-l~~~~~d-G~l~~~GR~dd~iki~G~ri 444 (617)
T 3rg2_A 402 HNASAFDANGF--YCSGD-LISIDPE-GYITVQGREKDQINRGGEKI 444 (617)
T ss_dssp HHHHHBCTTSC--EEEEE-EEEECTT-SCEEEEEECSSEEEETTEEE
T ss_pred hhhhccCCCCc--eecCc-eEEEcCC-ceEEEEeecCCEEEECCEEe
Confidence 654 566 88999 9999998 99999999999999999986
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=490.03 Aligned_cols=389 Identities=19% Similarity=0.198 Sum_probs=307.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEE----CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~----~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+.++.++|+++++++|+++|+++ .++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 46899999999999999999994 56789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
+++||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.+++... .....+.++.......
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 170 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP------EGYLAYEEALGEEADP 170 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC------TTCEEHHHHCCSCCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC------cccccHHHHhhccCCc
Confidence 9999999999999999999999999999999888877776665554445666554221 0122344433322111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHH--HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA--IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
....+++++||+|||||||.||||+++|+++.+...+ ....++++++|++++.+|++|+.++ ..++.+++.|
T Consensus 171 -----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G 244 (541)
T 1v25_A 171 -----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVG 244 (541)
T ss_dssp -----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHT
T ss_pred -----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHhcC
Confidence 2346789999999999999999999999999877665 2345678999999999999999886 5678899999
Q ss_pred cEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 441 CCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 441 ~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
+++++.+. +++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++| +.++. +++|
T Consensus 245 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~~~ 322 (541)
T 1v25_A 245 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EVRQ 322 (541)
T ss_dssp CEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EEEE
T ss_pred ceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ceee
Confidence 99999874 7999999999999999999999999999876443344678999776 888999999999 67765 7999
Q ss_pred cccccccceEEeCC-CC----CCCHHHH---HHHHhhcCCCCCcCcEEEEeec----c--------------cCCccchh
Q psy8155 518 FYGATEGMAAILDI-NK----SLDVSAV---SEGIKKALPSYARPLFIRCLRE----V--------------EMTGTYKL 571 (617)
Q Consensus 518 ~YG~TE~~~~v~~~-~~----~~~~~~l---~~~l~~~Lp~~~~P~~~~~~~~----l--------------P~t~~GK~ 571 (617)
.||+||+...+... .. ....... ...++..+|.. .+.++++ + |....|+.
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~----~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV----RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC----EEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCc----EEEEECCCCCCCCCCCCcceEEEEeCcchhcccc
Confidence 99999997555421 11 1111111 11122223221 2333332 1 22335666
Q ss_pred hhHHHhh-----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQK-----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~~-----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++...++ +|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 399 ~~p~~t~~~f~~~g~--~~TGD-lg~~d~d-G~l~~~GR~~d~ik~~G~~v 445 (541)
T 1v25_A 399 GNEEATRSALTPDGF--FRTGD-IAVWDEE-GYVEIKDRLKDLIKSGGEWI 445 (541)
T ss_dssp TCHHHHHTTBCTTSC--EEEEE-EEEECTT-CCEEEEEESSCEEEETTEEE
T ss_pred CChhhhhhhccCCCC--eEcCC-EEEEcCC-ceEEEeecccceeeeCCEEE
Confidence 6655554 676 88999 9999998 99999999999999999986
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=479.05 Aligned_cols=379 Identities=20% Similarity=0.250 Sum_probs=301.8
Q ss_pred HHHHHHHhhCCCceEEE---ECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 212 DIFREHAVRSPNKVIFM---FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 212 ~~~~~~a~~~p~~~Al~---~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++|+++++++|+++|+. +.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
||.+|.+++.+++++++++++|++.+..+.+..+...... .+..++... ...+.+........ ....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~ 150 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDG---------RGSLTDAAAGASEA--FATI 150 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTS---------CSHHHHHHHTSCSC--CCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCc---------ccccchhhhcCCCC--cCcC
Confidence 9999999999999999999999998876655555444432 344443221 11111111111111 1122
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
...++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..++...++.+++.|+++++.++
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 45789999999999999999999999999999999999999999999999999999998876667789999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 449 ~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
+++..+++.++ ++|++.++|+++..|++........++++|.++ |+++++++.++|.+.++. +++|.||+||+..
T Consensus 231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~ 307 (503)
T 4fuq_A 231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNM 307 (503)
T ss_dssp CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTEE
T ss_pred CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccCc
Confidence 99999999998 899999999999999998877777788999887 788999999999999986 7999999999965
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccchhhhHHHh-----hcCCCCC
Q psy8155 527 AILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTYKLKKLDLQ-----KEGFDPN 584 (617)
Q Consensus 527 ~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~GK~dr~~L~-----~~g~~~~ 584 (617)
....+...... ...++..+|.. .+.+++ + + |....|+.++...+ ++|| |
T Consensus 308 ~~~~~~~~~~~---~~~~G~p~~~~----~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~--~ 378 (503)
T 4fuq_A 308 NTSNPYDGDRV---PGAVGPALPGV----SARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF--F 378 (503)
T ss_dssp CBCCCSSSCCC---TTEEEEBCTTC----EEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSC--E
T ss_pred ccccCCCCCCc---CCccccCCCCe----EEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCC--e
Confidence 54422111000 00111222211 233332 1 1 33445666665554 4666 8
Q ss_pred ccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 585 VIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 585 ~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+||| +|++|+| |+++|+||+|||||++|+||
T Consensus 379 ~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 409 (503)
T 4fuq_A 379 ITGD-LGKIDER-GYVHILGRGKDLVITGGFNV 409 (503)
T ss_dssp EEEE-EEEECTT-CEEEECCSSTTCEEETTEEE
T ss_pred Ecce-eEEEcCC-CcEEEEecCCCEEEECCEEE
Confidence 8999 9999998 99999999999999999986
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-56 Score=488.52 Aligned_cols=403 Identities=18% Similarity=0.174 Sum_probs=302.1
Q ss_pred ecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCC
Q psy8155 175 KDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQG 254 (617)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~g 254 (617)
....+.++..+++.|+++++..++......+...++.++|+++++++|+++|+++.++++||+||+++++++|++|++.|
T Consensus 6 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~G 85 (563)
T 1amu_A 6 KSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKG 85 (563)
T ss_dssp -----------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcC
Confidence 45567778888888888877776665555566789999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEE
Q psy8155 255 LKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334 (617)
Q Consensus 255 v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~ 334 (617)
+++|++|+|+++|++++++++|||+++|+++||+||.++.+++.+++++++++++|++.+....+.. ......+..
T Consensus 86 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~ 161 (563)
T 1amu_A 86 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEI 161 (563)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEE
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceee
Confidence 9999999999999999999999999999999999999999999999999999999999876654332 222223333
Q ss_pred eCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCC
Q psy8155 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414 (617)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 414 (617)
++... +. . ... ........++++|||+|||||||.||||+++|+++.+.+.+....++++++
T Consensus 162 ~~~~~------------~~---~-~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 223 (563)
T 1amu_A 162 FEEDT------------IK---I-REG--TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK 223 (563)
T ss_dssp CCCST------------TT---T-SCC--SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTT
T ss_pred ecchh------------hc---c-ccC--ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCC
Confidence 33210 00 0 000 011123467899999999999999999999999999999888888999999
Q ss_pred CEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCcee
Q psy8155 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 491 (617)
Q Consensus 415 d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr 491 (617)
|++++.+|++|+.++ +.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|... .++++|
T Consensus 224 d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr 296 (563)
T 1amu_A 224 DRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQ 296 (563)
T ss_dssp CEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCS
T ss_pred CEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------cccccc
Confidence 999999999999885 788899999999999875 7999999999999999999999999877532 357888
Q ss_pred eee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----
Q psy8155 492 LMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----- 562 (617)
Q Consensus 492 ~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----- 562 (617)
.++ |+++++++.++|.+. .+++|.||+||+...+. .......... ..++..+|. ..+.++++
T Consensus 297 ~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~--~~vG~p~~~----~~v~i~d~~~~~~ 367 (563)
T 1amu_A 297 TLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHS--VPIGAPIQN----TQIYIVDENLQLK 367 (563)
T ss_dssp EEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSS--CCCBEECTT----EEEEEECTTSCBC
T ss_pred EEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCC--CcccceeCC----CEEEEECCCcCCC
Confidence 776 888999999999875 37999999999854322 1111000000 001111221 12333321
Q ss_pred -------c----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 563 -------V----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 563 -------l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+ |....|+.++...+++.| .||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 368 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD-lg~~d~d-G~l~i~GR~~d~Ik~~G~~V 440 (563)
T 1amu_A 368 SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD-QARWLSD-GNIEYLGRIDNQVKIRGHRV 440 (563)
T ss_dssp CTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE-EEEECTT-SCEEEEEEGGGEEEETTEEE
T ss_pred CCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC-EEEEcCC-CeEEEeccccCEEEECCEEe
Confidence 1 333456666655443322 1388999 9999998 99999999999999999986
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-55 Score=484.26 Aligned_cols=397 Identities=21% Similarity=0.250 Sum_probs=309.9
Q ss_pred ccCCCHH-HHHHHHHhhCCCceEEEEC-----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy8155 205 QKDLTIA-DIFREHAVRSPNKVIFMFE-----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278 (617)
Q Consensus 205 ~~~~tl~-~~~~~~a~~~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~ 278 (617)
+...++. ++|+++|+++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~ 131 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGL 131 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3345555 9999999999999999972 468999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchH--HHHHHHHHhcCCC-eEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 279 SKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELT--DAVQEISTSLGSN-VKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 279 ~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~--~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
+|+|+++||++|.++.+++.+++++++++++|++.+.. +.+......++.. ..++.++... ..+...+.+.
T Consensus 132 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 205 (580)
T 3etc_A 132 HKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV------LEGWIDFRKE 205 (580)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC------CTTCEEHHHH
T ss_pred HhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc------ccccccHHHH
Confidence 99999999999999999999999999999999988754 6666666665544 4555555321 1123444444
Q ss_pred hccCCCCCC--CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHH
Q psy8155 356 LSEVPTSPP--SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433 (617)
Q Consensus 356 ~~~~~~~~~--~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 433 (617)
+........ .......++|++||+|||||||.||||+++|+++...+......+++.+++++++.+|++|+.+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (580)
T 3etc_A 206 LEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKL 285 (580)
T ss_dssp HHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTT
T ss_pred HhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHH
Confidence 443332221 111245789999999999999999999999999988887777778899999999999999988865567
Q ss_pred HHHhHcCcEEEEc--CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHH
Q psy8155 434 GQALIFGCCVVIR--KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDR 509 (617)
Q Consensus 434 ~~~L~~G~~lvi~--~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~ 509 (617)
+.++..|+++++. +.+++..+++.|+++++|++.++|++++.|++. .....++++||.++ ||++++++.++|.+.
T Consensus 286 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 364 (580)
T 3etc_A 286 YGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364 (580)
T ss_dssp HHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHH
Confidence 8899999999998 568999999999999999999999999999986 33445688999887 899999999999999
Q ss_pred cCcccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEee---cccCCccchh
Q psy8155 510 FRIAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLR---EVEMTGTYKL 571 (617)
Q Consensus 510 ~~~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~---~lP~t~~GK~ 571 (617)
++. +++|.||+||+...+.. +....... .++..+|.+. .+..+.+-. .-|....|+.
T Consensus 365 ~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~----~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~ 439 (580)
T 3etc_A 365 TGI-KLMEGFGQTETVVTIATFPWMEPKPG----SIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYG 439 (580)
T ss_dssp HSC-CCEEEECCTTSSCCEECCTTSCCCTT----CCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEET
T ss_pred hCC-eEecccccccccceeecCCCCCCCCC----ccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeecccc
Confidence 886 79999999999665552 11111110 1122222221 112222221 1133345666
Q ss_pred hhHHHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++...++ +|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 440 ~~p~~t~~~f~~gw--y~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~I 485 (580)
T 3etc_A 440 KDPERTEETWHDGY--YHTGD-MAWMDED-GYLWFVGRADDIIKTSGYKV 485 (580)
T ss_dssp TCHHHHHHHEETTE--EEEEE-EEEECTT-SCEEEEEESSSCEEETTEEE
T ss_pred CCHhHHHhhcCCCE--EecCc-EEEECCC-CcEEEEecCCCEEEECCEEE
Confidence 5555543 566 88999 9999998 99999999999999999986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=518.56 Aligned_cols=448 Identities=15% Similarity=0.158 Sum_probs=309.1
Q ss_pred hhhhhhhhhccchhhhcccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCC
Q psy8155 144 KKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPN 223 (617)
Q Consensus 144 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~ 223 (617)
.+|++++.+.++++++..++..++ ..+...+..........+. ......+...|++++|.++++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~p~~~tl~~~l~~~a~~~pd 76 (979)
T 3tsy_A 9 HHSSGLVPRGSHMARMAPQEQAVS-QVMEKQSNNNNSDVIFRSK-----------LPDIYIPNHLSLHDYIFQNISEFAT 76 (979)
T ss_dssp -------------------------------------CCCBCCS-----------SCCCCCCTTSCHHHHHTTTGGGTTT
T ss_pred ccccCcccCcchhhhhhhHHHHHH-HhhhhcccCCCCCceeecC-----------CCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 379999999999999998877654 2222222211111111110 0112334568999999999999999
Q ss_pred ceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHH
Q psy8155 224 KVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCI 301 (617)
Q Consensus 224 ~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il 301 (617)
++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+||.+|.+++.+++
T Consensus 77 ~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l 156 (979)
T 3tsy_A 77 KPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQA 156 (979)
T ss_dssp SEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHH
T ss_pred CeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHH
Confidence 9999997 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC-CCCCCCCCCCCCeEEEEE
Q psy8155 302 NIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS-PPSLSYRVGVQDKLIYIY 380 (617)
Q Consensus 302 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~ 380 (617)
++++++++|++.+..+.+..+.... ...++.+++.... ........+.++....... .........+++++||+|
T Consensus 157 ~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 232 (979)
T 3tsy_A 157 KASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESV--PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPY 232 (979)
T ss_dssp HHHTEEEEEECSTTTTTSHHHHHTS--CCEEEECCCCTTS--CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCB
T ss_pred HHcCCeEEEEChHHHHHHHHHhhcC--CceEEEeCCcccc--cCCcccccHHHHhhccccccccCCcCCCCccceEEEEe
Confidence 9999999999998777666654432 3456666543211 1111123333333322110 011223457899999999
Q ss_pred ccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHH
Q psy8155 381 TSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFS 456 (617)
Q Consensus 381 TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~ 456 (617)
||||||+||||+++|+++.+.+.+... .+++.++|++++.+|++|+.++...++.+|..|+++++.+++++..+++
T Consensus 233 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 312 (979)
T 3tsy_A 233 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLE 312 (979)
T ss_dssp CCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHH
T ss_pred CCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHH
Confidence 999999999999999999988876654 4568899999999999999997677889999999999999999999999
Q ss_pred HHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC----
Q psy8155 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD---- 530 (617)
Q Consensus 457 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~---- 530 (617)
.|+++++|++.++|+++..|++.......++++||.++ |+++++++.++|.+.+|..+++|.||+||+...+..
T Consensus 313 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~ 392 (979)
T 3tsy_A 313 LIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGF 392 (979)
T ss_dssp HHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGG
T ss_pred HHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCC
Confidence 99999999999999999999988776666789999887 888999999999999977789999999999654431
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhhHHHh-----hcCCCCCccCC
Q psy8155 531 INKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKKLDLQ-----KEGFDPNVIQD 588 (617)
Q Consensus 531 ~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~L~-----~~g~~~~~TGD 588 (617)
........ ...+...+|. ..+.+++. + |....|++++...+ .+|| |+|||
T Consensus 393 ~~~~~~~~--~~~~G~p~~~----~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~--~~TGD 464 (979)
T 3tsy_A 393 AKEPFPVK--SGACGTVVRN----AEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW--LHTGD 464 (979)
T ss_dssp SSSCCCCC--TTCCCEECSS----CEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSC--EEEEE
T ss_pred CCCccccC--CCCcCcccCC----cEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCc--EEcCC
Confidence 11100000 0001111211 12333331 1 33345666554443 5677 88999
Q ss_pred eeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 589 RLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 589 ~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|++|+| |+|+|+||+||+||++|+||
T Consensus 465 -l~~~~~d-G~l~~~GR~dd~ik~~G~~v 491 (979)
T 3tsy_A 465 -IGLIDDD-DELFIVDRLKELIKYKGFQV 491 (979)
T ss_dssp -EEEECTT-SCEEEEEESCC---------
T ss_pred -EEEEcCC-ceEEEecCCCCEEEECCEEE
Confidence 9999998 99999999999999999997
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=493.43 Aligned_cols=400 Identities=19% Similarity=0.224 Sum_probs=307.6
Q ss_pred CCHHHHHHHHHhhCCCceEEEE------CCceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 208 LTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~------~~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
.++.++|+++++++|+++|+++ .++++||+||+++++++|+.|+ ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3678899999999999999998 3578999999999999999999 99999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCC-CCCCCCCCcC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTD-SSSSPVPRSQ 350 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 350 (617)
+|++++|++|.++.+++.++++++++++||+++.. .+.+.+....++....+++++.... ..........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 99999999999999999999999999999998764 2344444444444445666654221 0000001122
Q ss_pred CcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHH
Q psy8155 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~ 429 (617)
.+.++........ ......+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+.+.
T Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 319 (663)
T 1ry2_A 242 DWATEKKKYKTYY--PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGH 319 (663)
T ss_dssp EHHHHHTTSCSCC--CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHH
T ss_pred cHHHHHhhcCCCC--CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhh
Confidence 3444444322111 12245689999999999999999999999999887664 45567899999999999999999997
Q ss_pred HHHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHH
Q psy8155 430 AMCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
.+.++.+|+.|+++++.+. .++..+++.|++++||++.++|++++.|.+... ....++++||.++ ||+++++
T Consensus 320 ~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~ 399 (663)
T 1ry2_A 320 TYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAE 399 (663)
T ss_dssp HHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHH
Confidence 6788999999999999874 589999999999999999999999999988764 2345689999887 8999999
Q ss_pred HHHHHHHHcC--cccccccccccccceEEe-C-C-C-CCCCHHHHHHHHhhcCCCC----------------CcCcEEEE
Q psy8155 502 IWSEFVDRFR--IAQIGEFYGATEGMAAIL-D-I-N-KSLDVSAVSEGIKKALPSY----------------ARPLFIRC 559 (617)
Q Consensus 502 ~~~~~~~~~~--~~~l~n~YG~TE~~~~v~-~-~-~-~~~~~~~l~~~l~~~Lp~~----------------~~P~~~~~ 559 (617)
+++++.+.++ .+.++|.||+||+...+. . + + ...... .+...+|.+ ..+..+++
T Consensus 400 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~g----s~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i 475 (663)
T 1ry2_A 400 VWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG----SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV 475 (663)
T ss_dssp HHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTT----CCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred HHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCC----ccccCcCCCeEEEEcCCCCCcCCCCCcceEEEE
Confidence 9999999987 247999999999965443 1 1 1 111110 111122221 11123443
Q ss_pred eecccCCccchhhhHHHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 560 LREVEMTGTYKLKKLDLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 560 ~~~lP~t~~GK~dr~~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|-...|+.++.... .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~--y~TGD-lg~~d~d-G~l~i~GR~dd~Ik~~G~rI 536 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGY--YFTGD-GAAKDKD-GYIWILGRVDDVVNVSGHRL 536 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTS--EEEEE-EEEECTT-CCEEECSCTTSCBCSSSCCB
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCE--EEcCC-EEEEcCC-CCEEEEeecCCEEEECCEEc
Confidence 343354555665443322 2577 78999 9999998 99999999999999999997
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=480.33 Aligned_cols=389 Identities=16% Similarity=0.178 Sum_probs=308.8
Q ss_pred CCHHH-HHHHHHhhCCCceEEEE--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 208 LTIAD-IFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 208 ~tl~~-~~~~~a~~~p~~~Al~~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.++.+ ++.++++++ +++|+++ .++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 899999999 9999998 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC-C
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS-P 363 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 363 (617)
+||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.++.... ......+.++....... .
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 178 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-----YRGYQCLDTFIKRNTPPGF 178 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-----BTTBCBHHHHHHHTSCTTC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-----ccccccHHHHHhcCccccC
Confidence 99999999999999999999999999999888777766655554456666653210 00122344444432111 1
Q ss_pred CCCCCCCC-----C-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 364 PSLSYRVG-----V-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 364 ~~~~~~~~-----~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+. .... + ++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.++...++
T Consensus 179 ~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 256 (548)
T 2d1s_A 179 QA--SSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLG 256 (548)
T ss_dssp CG--GGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred Cc--ccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHH
Confidence 11 1122 4 899999999999999999999999999988887766 68889999999999999998655466
Q ss_pred HHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 435 QALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
.++ .|+++++.+++++..+++.|+++++|++.++|++++.|++.......++++||.++ ||++++++.++|.+.++.
T Consensus 257 ~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (548)
T 2d1s_A 257 YLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335 (548)
T ss_dssp HHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred HHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCC
Confidence 677 99999999999999999999999999999999999999987665556788999876 888999999999999976
Q ss_pred ccccccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccchhhhH
Q psy8155 513 AQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTYKLKKL 574 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~GK~dr~ 574 (617)
.+++|.||+||+...+. .+...... ..+...+|.. .+.+++ + + |....|+.++.
T Consensus 336 ~~i~~~YG~TE~~~~~~~~~~~~~~~----~~~G~~~~~~----~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~ 407 (548)
T 2d1s_A 336 PGVRQGYGLTETTSAIIITPEGDDKP----GASGKVVPLF----KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNP 407 (548)
T ss_dssp SCCEEEEECGGGSSEEEECCTTCCCT----TCCBEECTTC----EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CceeeccccccccceeeecCcccCCC----CCCCccCCCc----eEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCCh
Confidence 68999999999965544 22111000 0011112211 233332 0 1 23335666554
Q ss_pred HHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+ .+|| |+||| +|++|+| |+++|+||.||+||++|+||
T Consensus 408 ~~t~~~f~~~g~--~~TGD-l~~~~~d-G~l~~~GR~~d~ik~~G~~v 451 (548)
T 2d1s_A 408 EATKELIDEEGW--LHTGD-IGYYDEE-KHFFIVDRLKSLIKYKGYQV 451 (548)
T ss_dssp HHHHHHBCTTSC--EEEEE-EEEECTT-CCEEEEEEGGGCBCBTTCCB
T ss_pred HHhhhcccCCcE--EEccC-EEEEcCC-CeEEEeccccceEEECCEEE
Confidence 443 4677 88999 9999998 99999999999999999997
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=493.04 Aligned_cols=399 Identities=15% Similarity=0.182 Sum_probs=306.5
Q ss_pred CHHHHHHHHHhhCCCceEEEE------CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 209 TIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~------~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+++++|+++++++|+++|+++ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 578899999999999999998 24689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcC--CCeEEEEeCCCCCCCCCCCCCcCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLG--SNVKLFSWSPDTDSSSSPVPRSQA 351 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 351 (617)
++++|++|.++.+++.+++++++++++|+++.. .+.+.+.....+ ....+++++...............
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 999999999999999999999999999998753 234444443332 234566665322110000011223
Q ss_pred cchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHHH
Q psy8155 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGA 430 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~~ 430 (617)
+.+++....... ......+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+.+..
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 314 (652)
T 1pg4_A 237 WRDLIEKASPEH--QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314 (652)
T ss_dssp HHHHHTTSCSCC--CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred HHHHHhhcCCCC--CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechH
Confidence 445544322211 12245689999999999999999999999999887664 456678999999999999999999976
Q ss_pred HHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHH
Q psy8155 431 MCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQI 502 (617)
Q Consensus 431 ~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~ 502 (617)
+.++.+|+.|+++++.+. .++..+++.|+++++|++.++|++++.|++... ....++++||.++ ||++++++
T Consensus 315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 394 (652)
T 1pg4_A 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA 394 (652)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHH
Confidence 788999999999999874 589999999999999999999999999998754 3345689999887 89999999
Q ss_pred HHHHHHHcCc--ccccccccccccceEEeCC--CC-CCCHHHHHHHHhhcCCCCC--------------cCcEEEEeecc
Q psy8155 503 WSEFVDRFRI--AQIGEFYGATEGMAAILDI--NK-SLDVSAVSEGIKKALPSYA--------------RPLFIRCLREV 563 (617)
Q Consensus 503 ~~~~~~~~~~--~~l~n~YG~TE~~~~v~~~--~~-~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~l 563 (617)
+++|.+.++. +.++|.||+||+...+... +. ..... .+...+|... .+..+++.+.+
T Consensus 395 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~----s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~ 470 (652)
T 1pg4_A 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG----SATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 470 (652)
T ss_dssp HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTT----CCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCC
T ss_pred HHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCC----ccccCcCCCeEEEECCCCCCcCCCceEEEEEccCC
Confidence 9999999872 3799999999996554421 11 11000 1122222211 11234444433
Q ss_pred cCCccchhhhHHHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 EMTGTYKLKKLDLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 P~t~~GK~dr~~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++.... .+|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 471 p~~~~gY~~~~e~~~~~~~~~~~g~--y~TGD-lg~~d~d-G~l~i~GR~dd~Ik~~G~rI 527 (652)
T 1pg4_A 471 PGQARTLFGDHERFEQTYFSTFKNM--YFSGD-GARRDED-GYYWITGRVDDVLNVSGHRL 527 (652)
T ss_dssp TTCCCEETTCHHHHHHHHHSSSTTS--EEEEE-EEEECTT-SCEEEEEESSSEEEETTEEE
T ss_pred CchhhhhcCCHHHHHhhhhhcCCCE--EECCc-EEEEcCC-CcEEEEecCCCEEEECCEEE
Confidence 55555665443221 2677 78999 9999998 99999999999999999986
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=484.32 Aligned_cols=378 Identities=16% Similarity=0.202 Sum_probs=296.0
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+++.++|+++|+++|+++|+++.++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+||.++.+++.+++++++++++|++...... . ....++.. ..+.+.........+...
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~--~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 138 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------D--LPVRIVSE--------------DNLKDIFFTHKGNTPNPE 138 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------C--CSSEEEET--------------HHHHHHHHHTTTCCCCGG
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------c--cccceech--------------hhhhhhcccccccCCCcc
Confidence 9999999999999999999999998542210 0 01111111 011111111112222222
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ +.++.+|+.|+++++.+
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAID 217 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECC
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECC
Confidence 34578999999999999999999999999999999999999999999999999999999985 77899999999999998
Q ss_pred C---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 448 K---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 448 ~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
. .++..+++.|+++++|++.++|+++..++.........++++|.++ ||++++++.++|.+.++..+++|.||+|
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T 297 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPT 297 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCG
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccC
Confidence 6 7999999999999999999999999999988777777789999887 8899999999999999777899999999
Q ss_pred ccceEEeCCCCCCCHHHHHHH----HhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh------
Q psy8155 523 EGMAAILDINKSLDVSAVSEG----IKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK------ 578 (617)
Q Consensus 523 E~~~~v~~~~~~~~~~~l~~~----l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~------ 578 (617)
|+...+.... ......... +...+|.. ..+..+.+.+ |....|+.++..+++
T Consensus 298 E~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~ 373 (512)
T 3fce_A 298 EATVAVTGIH--VTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVG--PSVSVGYLGSPELTEKAFTMI 373 (512)
T ss_dssp GGSSCSEEEE--CCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEES--TTSCSCBTTCHHHHHHHEEEE
T ss_pred hhhhheeeEE--eccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEec--cccChhhcCCchhhhhccccC
Confidence 9954433100 001100000 01111111 1111222222 344456666555544
Q ss_pred --cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 --EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 --~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| ++||| +|++ +| |+++|+||.||+||++|+||
T Consensus 374 ~~~~~--~~TGD-lg~~-~d-G~l~i~GR~~d~ik~~G~~v 409 (512)
T 3fce_A 374 DGERA--YKTGD-AGYV-EN-GLLFYNGRLDFQIKLHGYRM 409 (512)
T ss_dssp TTEEE--EEEEE-EEEE-ET-TEEEEEEEGGGCEEETTEEE
T ss_pred CCCEE--EeCCc-eEEe-cC-CEEEEecccCCEEEECCEEE
Confidence 346 88999 9999 66 99999999999999999986
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-55 Score=483.32 Aligned_cols=374 Identities=18% Similarity=0.210 Sum_probs=281.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
+...+++++|+++++++|+++|+++.++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
+||+||.++.+++.+++++++++++|++.+....+ .....+...+... ... ...
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~-----------------~~~--~~~ 205 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEAA-----------------SDA--PAG 205 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC--------------------------CC
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeecccc-----------------ccc--ccc
Confidence 99999999999999999999999999997654321 1112222111100 000 111
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+ .+.++.+|+.|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAF-GLELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTH-HHHHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHH-HHHHHHHHhcCCEEE
Confidence 1123457899999999999999999999999999876655 34567889999999999999766 578899999999999
Q ss_pred EcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+ .+++..+++.|+++++|++.++|+++..|++... ..+++||.++ ||++++++.+++.+.++..+++|.||
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG 360 (570)
T 4gr5_A 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYG 360 (570)
T ss_dssp ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeec
Confidence 987 4799999999999999999999999999987543 3578899887 88899999999999997778999999
Q ss_pred ccccceEEe---CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec------------c----cCCccchhhhHHHhhcCC
Q psy8155 521 ATEGMAAIL---DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE------------V----EMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 521 ~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~------------l----P~t~~GK~dr~~L~~~g~ 581 (617)
+||+..... ......... ...++..+|. ..+.++++ + |....|+.++...+++.|
T Consensus 361 ~TE~~~~~~~~~~~~~~~~~~--~~~iG~p~~~----~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f 434 (570)
T 4gr5_A 361 PAESMGFTTHHAVVAGDLSGT--ALPIGVPLAG----KRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434 (570)
T ss_dssp CGGGCSCSEEEECCGGGTTSS--SCCCBEECTT----EEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred hhhheeeeeeeeecccccCCC--ccccceeeCC----CEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhccc
Confidence 999854332 100000000 0001111111 12333321 1 344456776666554322
Q ss_pred -----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 -----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 -----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 435 ~~~~~~~~~~~~w~~TGD-lg~~d~d-G~l~~~GR~~d~Ik~~G~~v 479 (570)
T 4gr5_A 435 VADPFAGPGGERMYRTGD-LARRRAD-GVLEYVGRADDQVKIRGFRV 479 (570)
T ss_dssp EECTTCCSSCCEEEEEEE-EEEECTT-SCEEEEEC------------
T ss_pred ccCCCCCCCCCEEEeCCC-eEEECCC-CeEEEEcccCCEEEECcEEe
Confidence 1388999 9999998 99999999999999999997
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-54 Score=476.21 Aligned_cols=390 Identities=18% Similarity=0.194 Sum_probs=305.1
Q ss_pred CHHHHHHHHHhh-----CCCceEEEEC-----CceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHH
Q psy8155 209 TIADIFREHAVR-----SPNKVIFMFE-----NTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLG 277 (617)
Q Consensus 209 tl~~~~~~~a~~-----~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA 277 (617)
++.++|++++++ +|+++|+++. ++++||+||+++++++|++|++. |+++|++|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467899999998 9999999972 37899999999999999999998 999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 278 ~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
|+++|+++||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.+++... .....+.+++.
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 192 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC------DGWLNFKKLLN 192 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC------TTSEEHHHHHH
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc------cccccHHHHhh
Confidence 999999999999999999999999999999999999888877776666555445565553211 01233444443
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHH-HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 436 (617)
..+...+ .....+++++||+|||||||.||||+++|+.+.+ ...+. ..++++++|++++.+|++|+.++...++.+
T Consensus 193 ~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~ 269 (570)
T 3c5e_A 193 EASTTHH--CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEP 269 (570)
T ss_dssp HSCSCCC--CCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHH
T ss_pred ccccccc--ccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHH
Confidence 3322211 1245689999999999999999999999994432 34444 677889999999999999999976678899
Q ss_pred hHcCcEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 437 LIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 437 L~~G~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
|..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.. ....++++||.++ ||++++++.++|.+.++.
T Consensus 270 l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 270 WALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp HHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred HHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 99999999986 689999999999999999999999999999863 3344678898876 899999999999999876
Q ss_pred ccccccccccccceEEeCCC-CCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeec---ccCCccchhhhH
Q psy8155 513 AQIGEFYGATEGMAAILDIN-KSLDVSAVSEGIKKALPSYA--------------RPLFIRCLRE---VEMTGTYKLKKL 574 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~---lP~t~~GK~dr~ 574 (617)
+++|.||+||+...+.... ..... ..++..+|... .+..+.+... =|....|+.++.
T Consensus 349 -~i~~~YG~TE~~~~~~~~~~~~~~~----~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~ 423 (570)
T 3c5e_A 349 -DIRESYGQTETGLTCMVSKTMKIKP----GYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423 (570)
T ss_dssp -CCEEEEEETTTEEEEECCTTSCCCT----TCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCH
T ss_pred -chhhccchhhcccceecCcccccCC----CcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCCh
Confidence 7999999999976554221 11110 01112222211 1122222100 122335777766
Q ss_pred HHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..++ +|| ++||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 424 ~~t~~~f~~~~--~~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~V 466 (570)
T 3c5e_A 424 DKTAANIRGDF--WLLGD-RGIKDED-GYFQFMGRADDIINSSGYRI 466 (570)
T ss_dssp HHHHHTEETTE--EEEEE-EEEECTT-SCEEEEEEGGGCEEETTEEE
T ss_pred hHhhhhhcCCc--cccce-eEEEcCC-ceEEEEecCCCEEEECCEEE
Confidence 6654 456 88999 9999998 99999999999999999986
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=469.25 Aligned_cols=389 Identities=17% Similarity=0.224 Sum_probs=292.6
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++.++|+++++ +|+++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++||+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 48899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCC-eEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN-VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
|+.++.+++.+++++++++++|++.+..+.+.......+.. ..++..+..... ......+.++........ ..
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~ 177 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE----PRLAPLFEELIDAAAPAA--KA 177 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCCCS--SC
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc----cccccchhhhhccCCCcc--cc
Confidence 99999999999999999999999998877666654433322 344444432110 000123444443222111 12
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHH-HHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
....+++++||+|||||||+||||+++|+++ .+...+....++++++|++++.+|++|+.++...++.+|..|+++++.
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 178 AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred cCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 2457899999999999999999999999999 565555555678899999999999999999766677899999999988
Q ss_pred -CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 447 -KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 447 -~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
+.+++..+++.|+++++|++.++|+++..+++..........++|.+. ||++++++.++|.+.++. +++|.||+||
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE 336 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTE 336 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEECTT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEchhh
Confidence 578999999999999999999999999999987654433234788776 888999999999999976 7999999999
Q ss_pred cceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHhh----cCCC
Q psy8155 524 GMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQK----EGFD 582 (617)
Q Consensus 524 ~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~~----~g~~ 582 (617)
+...+. ......... .++..+|.. .+.++++ + |....|++++...++ +||
T Consensus 337 ~~~~~~~~~~~~~~~~----~~G~p~~~~----~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~- 407 (529)
T 2v7b_A 337 MLHIFLSNRAGAVEYG----TTGRPVPGY----EIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEW- 407 (529)
T ss_dssp TSSEEEECCTTCCCTT----SCCEECTTC----EEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTE-
T ss_pred cCceeeccccCCCccC----CcccCCCCC----EEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCC-
Confidence 954333 211110000 011122211 2333321 1 333456666555543 466
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|+| |+++|+||+||+||++|+||
T Consensus 408 -~~TGD-l~~~~~~-G~l~~~GR~dd~ik~~G~~v 439 (529)
T 2v7b_A 408 -IRSGD-KYCRLPN-GCYVYAGRSDDMLKVSGQYV 439 (529)
T ss_dssp -EEEEE-EEEECTT-SCEEEEEEGGGCBC----CB
T ss_pred -cccCc-eEEECCC-ccEEEeCccCCeEEECCEEE
Confidence 78999 9999997 99999999999999999997
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=467.00 Aligned_cols=379 Identities=19% Similarity=0.190 Sum_probs=298.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
+++.++|+++|+++|+++|+++.++++||+||+++++++|++|++. |+++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999875 888999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+||.+|.+++.+++++++++++|++...... ....... ...+.++....... ...
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~-----------------~~~~~~~~~~~~~~-~~~ 136 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQQIQ-----------------TVSAEELLENEGGS-VSQ 136 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCCSSC-----------------EEEHHHHHTSCSCC-CCG
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcccccc-----------------eecHhhhhccccCC-ccc
Confidence 99999999999999999999999997543210 0001111 11122222222111 112
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ +.++.+|..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV 215 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc
Confidence 234578899999999999999999999999999999999999999999999999999999885 7789999999999998
Q ss_pred CC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccc
Q psy8155 447 KK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGA 521 (617)
Q Consensus 447 ~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 521 (617)
+. .++..+++.|+++++|++.++|+++..++..+......++++|.+. ||++++++.++|.+.++..+++|.||+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 86 6899999999999999999999999999988776677788998876 889999999999999976789999999
Q ss_pred cccceEEeC--CC-------CCCCHH--------HHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC---
Q psy8155 522 TEGMAAILD--IN-------KSLDVS--------AVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF--- 581 (617)
Q Consensus 522 TE~~~~v~~--~~-------~~~~~~--------~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~--- 581 (617)
||+...+.. .. ...... .+.+.-.+.+|.- .+..+.+.+ |....|+.++...+++.|
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g-~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~ 372 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEG-EKGEIVIAG--PSVSRGYLGEPELTEKAFFSH 372 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTT-CCEEEEEES--TTSCCCBTTCHHHHHHHEEES
T ss_pred chheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCC-CceEEEEec--CccChhhCCCcccchhhhcCC
Confidence 998543321 00 000000 0000001111111 112222222 334457776666654332
Q ss_pred ---CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 ---DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ---~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.||+||| +|+++ | |+|+|+||+||+||++|+||
T Consensus 373 ~g~~~~~TGD-lg~~~-d-G~l~~~GR~~d~ik~~G~~v 408 (511)
T 3e7w_A 373 EGQWAYRTGD-AGFIQ-D-GQIFCQGRLDFQIKLHGYRM 408 (511)
T ss_dssp SSSEEEEEEE-EEEEE-T-TEEEEEEESSSEEEETTEEE
T ss_pred CCCEEEeCCC-eEEcc-C-CeEEEEccccCEEEECCEEe
Confidence 1488999 99995 6 99999999999999999986
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=469.78 Aligned_cols=378 Identities=17% Similarity=0.156 Sum_probs=291.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|+++++++|+++|+.+.++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+||.++.+++.+++++++++++|++.+....+ ....++.+++ +........ ....
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~--------------~~~~~~~~~--~~~~ 138 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGISLVSLSE--------------IESAKLAEM--PYER 138 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTSEEEEHHH--------------HHHHHHHTC--CCCC
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccCcccchhh--------------hhhcccccC--Cccc
Confidence 999999999999999999999999987643211 1112221110 111111111 1111
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH--hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.....+++++||+|||||||.||||+++|+++.+.+.+.... +++.+++++++..|++|+.+. ..++.++..|++++
T Consensus 139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~ 217 (521)
T 3l8c_A 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLF 217 (521)
T ss_dssp SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEE
T ss_pred CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEE
Confidence 234578999999999999999999999999999988887766 678899999999999998884 77889999999999
Q ss_pred EcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 445 IRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 445 i~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
+.+. .++..+++.|+++++|++.++|+++..++.........++++|.+. |+++++++.+++.+.++..+++|.|
T Consensus 218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 218 ALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp ECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 9886 4899999999999999999999999999988776667789999887 8899999999999999767899999
Q ss_pred cccccceEEeCCCCCCCHHHHHH----HHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh---
Q psy8155 520 GATEGMAAILDINKSLDVSAVSE----GIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK--- 578 (617)
Q Consensus 520 G~TE~~~~v~~~~~~~~~~~l~~----~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~--- 578 (617)
|+||+...+.... ........ .++..+|.. ..+..+.+.+ |....|+.++...++
T Consensus 298 G~TE~~~~~~~~~--~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f 373 (521)
T 3l8c_A 298 GPTEATVALSAIE--ITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTG--PAVSKGYLNNPEKTAEAF 373 (521)
T ss_dssp CCGGGSSCSEEEE--ECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEES--TTSCSCBTTCHHHHHHHE
T ss_pred CccHHhhhhceee--cccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecc--cccChhhcCCchHhhccC
Confidence 9999854332100 00000000 011111111 1112233322 444466766655543
Q ss_pred -----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 -----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 -----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 374 ~~~~~~~~--~~TGD-lg~~d~d-G~l~~~GR~~d~i~~~G~~v 413 (521)
T 3l8c_A 374 FTFKGQPA--YHTGD-IGSLTED-NILLYGGRLDFQIKYAGYRI 413 (521)
T ss_dssp EEETTEEE--EEEEE-EEEECSS-SCEEEEEEGGGBCC-----C
T ss_pred cCCCCcee--eeCCC-EEEEeCC-CeEEEeCcccceEeECCEEe
Confidence 345 88999 9999997 99999999999999999997
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=481.51 Aligned_cols=388 Identities=16% Similarity=0.147 Sum_probs=296.9
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
....|+.++|.++|+++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 55789999999999999999999874 58999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCC---hHHHHHHHHhcCceEEEEccchHHHHHHHH-HhcCC--CeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 281 LGVITALINHNLR---QNSLLHCINIAGVSAFIYGAELTDAVQEIS-TSLGS--NVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 281 aG~~~vpldp~~p---~~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
+|+++||++|.++ .+++.++++++++++++++.+..+.+.... ...+. ....+..+.
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 150 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALES----------------- 150 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGG-----------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechh-----------------
Confidence 9999999999884 578999999999999999987665543321 11111 111221111
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+...... ........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.++...++
T Consensus 151 ~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 151 IELNRSS--SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp CCGGGGG--GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred ccccccc--cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 0000000 01112457899999999999999999999999999999999999999999999999999999999755588
Q ss_pred HHhHcCcEEEEcCCC----CHHHHHHHHHHcCCcEEeecHHHHHHHHcCC---CCCCCccCceeeee--ccCCCHHHHHH
Q psy8155 435 QALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTP---EKPEDKAHNVRLMF--GNGLRPQIWSE 505 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~----d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~l~~lr~v~--Ge~l~~~~~~~ 505 (617)
.+|+.|+++++.+++ ++..+++.|+++++|++.++|+++..+++.. .....++++||.++ |+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 999999999999864 8999999999999999999999999887652 23345688999887 88899999999
Q ss_pred HHHHcCc-----ccccccccccccceEEeCC--CCCC---------------------CHHHH-HHHHh-----------
Q psy8155 506 FVDRFRI-----AQIGEFYGATEGMAAILDI--NKSL---------------------DVSAV-SEGIK----------- 545 (617)
Q Consensus 506 ~~~~~~~-----~~l~n~YG~TE~~~~v~~~--~~~~---------------------~~~~l-~~~l~----------- 545 (617)
|.+.++. .+++|.||+||+...+... +... ..... ...++
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~ 388 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDP 388 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECT
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcC
Confidence 9999852 3699999999996655411 1000 00000 00000
Q ss_pred ---hcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC-----------CCCccCCeeEEEeCCCceeeCCHHHHHHHh
Q psy8155 546 ---KALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF-----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLV 611 (617)
Q Consensus 546 ---~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~-----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~ 611 (617)
..+|. ..+..+.+-+ |....|+.++...+++.| .||+||| +|++| | |+|+|+||+|||||
T Consensus 389 ~~~~~~~~-g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGD-lg~~d-d-G~l~~~GR~dd~Ik 462 (590)
T 3kxw_A 389 DTLIPCDF-DQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD-LGFLH-E-NELYVTGRIKDLII 462 (590)
T ss_dssp TTCCBCCT-TBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEE-EEEEE-T-TEEEEEEESSCHHH
T ss_pred CCCcCCCC-CCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCc-EEEEE-C-CEEEEEcCccceEE
Confidence 01111 0111222221 344456666655543322 1488999 99999 7 99999999999999
Q ss_pred cCCcCC
Q psy8155 612 QGNIRL 617 (617)
Q Consensus 612 ~~G~~v 617 (617)
++|+||
T Consensus 463 ~~G~~v 468 (590)
T 3kxw_A 463 IYGKNH 468 (590)
T ss_dssp HHHHTT
T ss_pred ECCEec
Confidence 999997
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=453.17 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=248.1
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECC---------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHH
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFEN---------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~---------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva 274 (617)
..+..|+.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+ +|++|+|+++|+++++++
T Consensus 20 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp ----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHH
Confidence 3456899999999999999999999865 899999999999999999999996 999999999999999999
Q ss_pred HHHHHhcCCeEEecCC---CCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC--CeEEEEeCCCCCCCCCCCCCc
Q psy8155 275 WLGLSKLGVITALINH---NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRS 349 (617)
Q Consensus 275 ~lA~~~aG~~~vpldp---~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 349 (617)
+|||+++|+++||||+ .++.+++.+++++++++++|++.+..+.+.......+. ...++.++...
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 168 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD---------- 168 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC----------
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc----------
Confidence 9999999999999999 88999999999999999999999887766554322221 12333333211
Q ss_pred CCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCC------CCEEEEcCcc
Q psy8155 350 QALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT------KDRFYTPLPL 423 (617)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~p~ 423 (617)
.... .........++++|||+|||||||+||||+++|+++.+.+.+....+++.+ +|++++.+|+
T Consensus 169 -------~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 239 (480)
T 3t5a_A 169 -------LDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPF 239 (480)
T ss_dssp -------TTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCT
T ss_pred -------cccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCC
Confidence 0011 111123457889999999999999999999999999999999988888888 9999999999
Q ss_pred hhhHHHHHHHHHHhHcCcEEEEcCCC----CHHHHHHHHHHcCCcEEeecHHHHHHHHcC----CCCCCCccCceeeee-
Q psy8155 424 YHTAGGAMCIGQALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLST----PEKPEDKAHNVRLMF- 494 (617)
Q Consensus 424 ~~~~~~~~~~~~~L~~G~~lvi~~~~----d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~- 494 (617)
+|+.+++..++.+|+.|+++++.++. ++..+++.|+++++| +..+|+++..++.. ......++++||.++
T Consensus 240 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~ 318 (480)
T 3t5a_A 240 YHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILS 318 (480)
T ss_dssp TSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEE
T ss_pred cCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeee
Confidence 99999878899999999999998753 999999999999999 78889988877753 333455689999887
Q ss_pred -ccCCCHHHHHHHHHHcC-----cccccccccccccceEEe
Q psy8155 495 -GNGLRPQIWSEFVDRFR-----IAQIGEFYGATEGMAAIL 529 (617)
Q Consensus 495 -Ge~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~v~ 529 (617)
||+++++++++|.+.++ ..+++|.||+||+...+.
T Consensus 319 gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 319 GSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp CCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred cCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 88899999999999984 347999999999977665
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-52 Score=455.19 Aligned_cols=354 Identities=18% Similarity=0.216 Sum_probs=272.0
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+|+.++|.++|+++|+++|+++.++++||+||+++++++|++|++. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 3677899999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCC-----------CCCCCcCCcchhh
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS-----------SPVPRSQALSPLL 356 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~ 356 (617)
+|+.++.+++.+++++++++++|++.+..... ......+....... .............
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRG----------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVV 147 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTT----------SEEEETTC------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccc----------ccccccccceeeeeecccccccccccccccccchhhcc
Confidence 99999999999999999999999987654321 11111110000000 0000000000000
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHH
Q psy8155 357 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436 (617)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 436 (617)
.. ...........++++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++.+
T Consensus 148 ~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~ 225 (501)
T 3ipl_A 148 PK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRA 225 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHH-HHHHHH
T ss_pred cc-CCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHH-HHHHHH
Confidence 00 0000011224578999999999999999999999999999999999999999999999999999999996 558899
Q ss_pred hHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 437 L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
++.|+++++.+++++..+++.|+++++|++.++|++++.|++...... .+||.++ ||++++++.+++.+ ++. +
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~~~-~ 300 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-YNL-P 300 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-TTC-C
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-hCC-C
Confidence 999999999999999999999999999999999999999998765433 2787776 88999999999987 455 7
Q ss_pred cccccccccc----------------------------------------------------------------------
Q psy8155 515 IGEFYGATEG---------------------------------------------------------------------- 524 (617)
Q Consensus 515 l~n~YG~TE~---------------------------------------------------------------------- 524 (617)
++|.||+||+
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TG 380 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTG 380 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEE
T ss_pred EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCceecC
Confidence 9999999998
Q ss_pred -----------------------------------------------------------ceEEeCCCCCCCHHHHHHHHh
Q psy8155 525 -----------------------------------------------------------MAAILDINKSLDVSAVSEGIK 545 (617)
Q Consensus 525 -----------------------------------------------------------~~~v~~~~~~~~~~~l~~~l~ 545 (617)
.++++..+...+.+++++++.
T Consensus 381 Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~ 460 (501)
T 3ipl_A 381 DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLS 460 (501)
T ss_dssp EEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred CEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHH
Confidence 122222345567899999999
Q ss_pred hcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC
Q psy8155 546 KALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 546 ~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~ 581 (617)
++||.||+|..+.+++++|+|++||+||++|+++.-
T Consensus 461 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGH 496 (501)
T ss_dssp HHSCGGGSCSEEEECSSCC-----------------
T ss_pred hhCccccCCCEEEEecccCCCCCCCEeHHHHhhccc
Confidence 999999999999999999999999999999998764
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=455.75 Aligned_cols=379 Identities=16% Similarity=0.158 Sum_probs=272.2
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECC----------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHH
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFEN----------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~----------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~i 272 (617)
......|+.++|+++|+++|+++|+++.+ +++||+||+++++++|++|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 44567899999999999999999999753 789999999999999999999999 7999999999999999
Q ss_pred HHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCc
Q psy8155 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352 (617)
Q Consensus 273 va~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 352 (617)
+++|||+++|+++||+||.++.+++.+++++++++++|++.+....+ .......++..+ ...+
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~------------~~~~ 156 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK------------NQSF 156 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT------------CHHH
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc------------chhh
Confidence 99999999999999999999999999999999999999986643221 111122222221 1111
Q ss_pred chhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH--------hCCCCCCEEEEcCcch
Q psy8155 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--------IGFRTKDRFYTPLPLY 424 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~p~~ 424 (617)
.+......... ......+++++||+|||||||.||||+++|+++.+.+.+.... +.+...+++++..|++
T Consensus 157 ~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (562)
T 3ite_A 157 IENLSTQDTSD--ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA 234 (562)
T ss_dssp HHHHHHSCCSC--CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTT
T ss_pred hhhcccccccc--cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCch
Confidence 22222211111 1123457889999999999999999999999999888766554 4478889999999999
Q ss_pred hhHHHHHHHHHHhHcCcEEEEcCCC-CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHH
Q psy8155 425 HTAGGAMCIGQALIFGCCVVIRKKF-SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 425 ~~~~~~~~~~~~L~~G~~lvi~~~~-d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
|+.+ +.+++.++..|+++++.+.. .+..+.+.++++++|++.++|++++.+... ..++++||.++ |++++++
T Consensus 235 ~~~~-~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~ 309 (562)
T 3ite_A 235 FDVH-IGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPR 309 (562)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHH
T ss_pred hhhh-HHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHH
Confidence 9888 47888999999999998764 367889999999999999999999887543 34678999886 8889999
Q ss_pred HHHHHHHHcCcccccccccccccceEEe--CCCCCCCHHHHHHHHhhcCCCC---------------CcCcEEEEeeccc
Q psy8155 502 IWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVE 564 (617)
Q Consensus 502 ~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP 564 (617)
+.++|.+.++. +++|.||+||+...+. ......... .+...+|.. ..+..+.+.+ |
T Consensus 310 ~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~----~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g--~ 382 (562)
T 3ite_A 310 TQQIWSSSDRV-ALVNVYGPTEVTIGCSAGRILPDSDTR----CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEG--S 382 (562)
T ss_dssp HHHHHTTCSSC-EEEEEECCGGGCSCSEEEECCTTSCTT----EEEEECTTCEEEEECTTSSCBCCTTSCEEEEEES--T
T ss_pred HHHHHhhCCCc-EEEEeeccchheeeeeeeeecCCCCCc----cccccCCCCeEEEEeCCCCCCCCCCCceEEEEec--c
Confidence 99999887765 7999999999854332 111110000 011122211 1112222222 2
Q ss_pred CCccchhhhHHHhh----cC--CCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 565 MTGTYKLKKLDLQK----EG--FDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 565 ~t~~GK~dr~~L~~----~g--~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|+.++...++ +| | |+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 383 ~v~~GY~~~p~~t~~~~~~g~~w--~~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~v 437 (562)
T 3ite_A 383 LVANGYLNRPDAKGFCDINGRKM--YRTGD-IVRMDAD-SSILFLGRKDEQVKVRGQRL 437 (562)
T ss_dssp TSCCEESSCTTCCSEEEETTEEE--EEEEE-EEEECTT-SCEEEEEEC-----------
T ss_pred ccchhhCCCccccccccCCCCEE--EecCC-EEEEcCC-CeEEEEccccCEEeECcEEE
Confidence 33445555544332 33 6 88999 9999998 99999999999999999997
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-53 Score=458.58 Aligned_cols=367 Identities=17% Similarity=0.129 Sum_probs=285.4
Q ss_pred cCCCHHHHHHHHHhhCCC-ceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 206 KDLTIADIFREHAVRSPN-KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~-~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.-.++.+.|.++++++|+ ++|++++++++||+||+++++++|++|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 356888999999999997 9999999999999999999999999875 3789999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
+||+||.+|.+++.+++++++++++|++.+... .... .....+.++... ...
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~-~~~~~~~~~~~~----------------------~~~ 146 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPAL-GALERVDVDVRA----------------------RGA 146 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGG-TTSEEEECCTTC----------------------CCC
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhh-cccccccccccc----------------------ccC
Confidence 999999999999999999999999999865210 0011 112222222110 001
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..+++++++.+|..|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 11124578899999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC---CCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP---EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
+.+++++..+++.+ ++++|+++++|+++..|++..... ...++++|.++ |+++++++.++|.+.++. +++|.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeeccc
Confidence 99999999999999 889999999999999998732211 23467788776 788999999999999876 799999
Q ss_pred cccccceEEeCCC-CCCCHHHHHHHHhhcCCCC-----------------CcCcEEEEeecccCCccchhhhHHHh----
Q psy8155 520 GATEGMAAILDIN-KSLDVSAVSEGIKKALPSY-----------------ARPLFIRCLREVEMTGTYKLKKLDLQ---- 577 (617)
Q Consensus 520 G~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~-----------------~~P~~~~~~~~lP~t~~GK~dr~~L~---- 577 (617)
|+||+...+.... ...... .+...+|.. ..+..+.+.+ |....|++++...+
T Consensus 305 G~TE~~~~~~~~~~~~~~~~----~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f 378 (505)
T 3nyq_A 305 GMTETLMNTSVRADGEPRAG----TVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG--PNLFTEYLNRPDATAAAF 378 (505)
T ss_dssp EETTTEEEEECCTTSCCCTT----CCCEECTTCEEEEC-----CCCCCCSCCCEEEEEES--TTSCCEETTCHHHHHHTB
T ss_pred chhhcccccccCCCCCCCCC----CcccCCCCCEEEEECCCCCCcccCCCCceEEEEEec--CchhhhhCCChhHhhhhh
Confidence 9999976655221 111000 011112111 1112222221 34456777665555
Q ss_pred -hcCCCCCccCCeeEEEeCCCceeeCCHHH-HHHHhcCCcCC
Q psy8155 578 -KEGFDPNVIQDRLYYLSSKGVYEELTPEV-YKDLVQGNIRL 617 (617)
Q Consensus 578 -~~g~~~~~TGD~lg~~d~d~G~l~i~GR~-~d~I~~~G~~v 617 (617)
++|| |+||| +|++|+| |+++|+||+ ||+||++|+||
T Consensus 379 ~~~g~--y~TGD-l~~~~~d-G~l~~~GR~~d~~ik~~G~~v 416 (505)
T 3nyq_A 379 TEDGF--FRTGD-MAVRDPD-GYVRIVGRKATDLIKSGGYKI 416 (505)
T ss_dssp CTTSC--EEEEE-EEEECTT-SCEEEEEESSCCCEEETTEEE
T ss_pred cCCCC--CccCC-eEEECCC-ccEEEeCCccCceEEeCCEEE
Confidence 4566 88999 9999998 999999998 59999999986
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=295.55 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=174.9
Q ss_pred CCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCH
Q psy8155 372 VQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451 (617)
Q Consensus 372 ~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~ 451 (617)
.+++|||+|||||||+||||++||+++.+.+.+....++++++|++++++|++|+.++ ..++.+++.|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--
Confidence 3789999999999999999999999999999999999999999999999999999996 6788899999999998642
Q ss_pred HHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccccc-----
Q psy8155 452 SNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEG----- 524 (617)
Q Consensus 452 ~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~----- 524 (617)
...++.|+++++|++.++|++++.|++.... ..++++||.++ |+++++++.++|.+ ++. +++|.||+||+
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISD-LAM-PVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHT-CSS-CEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheecccc-cCc-eEEeccccccccceee
Confidence 2346678999999999999999999987653 44788999887 88899999999876 454 79999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy8155 525 -------------------------------------------------------------------------------- 524 (617)
Q Consensus 525 -------------------------------------------------------------------------------- 524 (617)
T Consensus 190 ~~~~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l 269 (358)
T 4gs5_A 190 LKALNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRI 269 (358)
T ss_dssp EEECSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHH
T ss_pred cccccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHH
Confidence
Q ss_pred ---------------------------ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHh
Q psy8155 525 ---------------------------MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQ 577 (617)
Q Consensus 525 ---------------------------~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~ 577 (617)
.+++.........++++++++++||.||+|..+.+++++|+|++||+||++|.
T Consensus 270 ~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 349 (358)
T 4gs5_A 270 AAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATF 349 (358)
T ss_dssp HHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHH
T ss_pred HHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHH
Confidence 12222333344567899999999999999999999999999999999999998
Q ss_pred hc
Q psy8155 578 KE 579 (617)
Q Consensus 578 ~~ 579 (617)
+.
T Consensus 350 ~~ 351 (358)
T 4gs5_A 350 QK 351 (358)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=290.53 Aligned_cols=235 Identities=15% Similarity=0.128 Sum_probs=178.4
Q ss_pred CCCC-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGV-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
...+ ++++||+|||||||.||||+++|+++.+...+.. ..++++++|++++..|++|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999988776653 34589999999999999776766677888999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..++..+++.|+++++|++.++|+++..|++....... .+++||.++ ||++++++.++|.+.++. +++|.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCc
Confidence 99889999999999999999999999999999876433222 367898876 889999999999999976 7999999
Q ss_pred ccccceE-Ee-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----ccCCccchhhhHHHhhcCC--CCCccCCeeE
Q psy8155 521 ATEGMAA-IL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----VEMTGTYKLKKLDLQKEGF--DPNVIQDRLY 591 (617)
Q Consensus 521 ~TE~~~~-v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----lP~t~~GK~dr~~L~~~g~--~~~~TGD~lg 591 (617)
+||+... +. ...... ...+|. --..+.+++ + +|....|.+--+.+.++.| .||+||| +|
T Consensus 240 ~TE~~~~~~~~~~~~~~---------g~~~~~--~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~~~~~y~TGD-l~ 307 (436)
T 3qov_A 240 MTEMNGPGVAFECQEQN---------GMHFWE--DCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRD-LT 307 (436)
T ss_dssp EGGGTEEEEEEECTTCS---------SEEECT--TTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSSCCCSEEEEE-EE
T ss_pred chhhcCCeeEEecCCCC---------eeEEcc--CceEEEEEECCCCCCCCCCCceEEEEeccCcCCceEEEEEcCC-EE
Confidence 9999543 33 111110 011110 012344444 1 3334445442222222222 3388999 99
Q ss_pred EEeCCCc------e---eeCCHHHHHHHhcCCcCC
Q psy8155 592 YLSSKGV------Y---EELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 592 ~~d~d~G------~---l~i~GR~~d~I~~~G~~v 617 (617)
++|++ | + ++|+||.||+||++|+||
T Consensus 308 ~~~~~-gc~cG~~~~~il~i~GR~dd~ik~~G~~v 341 (436)
T 3qov_A 308 RILPG-KCPCGRTHLRIDRIKGRSDDMFIIKGVNI 341 (436)
T ss_dssp CEECS-CCTTCCCSCEECCCCCBSSSCEEETTEEE
T ss_pred EEcCC-CCCCCCCccccCcccCccCCEEEECCEEE
Confidence 99997 8 6 799999999999999986
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=289.56 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=175.4
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcch-hhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLY-HTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~-~~~~~~~~~~~~L~~G~~lv 444 (617)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|++ |..+ ...++.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG-LGIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccH-HHHHHHHHHcCCEEE
Confidence 44678999999999999999999999999987665543 367899999999999984 5555 466788999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..+++.+++.|+++++|++.++|+++..|++....... .++++|.++ ||++++++.++|.+.++. +++|.||
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 245 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYG 245 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccC
Confidence 99888999999999999999999999999998875332222 247888776 889999999999999976 7999999
Q ss_pred ccccceE-Ee--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccCCccchhhhHHHhhcCC--CCCccCCee
Q psy8155 521 ATEGMAA-IL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEMTGTYKLKKLDLQKEGF--DPNVIQDRL 590 (617)
Q Consensus 521 ~TE~~~~-v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~t~~GK~dr~~L~~~g~--~~~~TGD~l 590 (617)
+||+... +. .+... ....+|. -...+.+++. +|....|.+--+.+.++.| .||+||| +
T Consensus 246 ~TE~~g~~~~~~~~~~~---------~g~~~~~--~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~p~~~y~TGD-l 313 (443)
T 2y4o_A 246 LSEVMGPGVACECVETK---------DGPVIWE--DHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRD-L 313 (443)
T ss_dssp ETTTTEEEEEEECTTTC---------CSEEECT--TTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCSSEEEEE-E
T ss_pred chhhcCCeEEeccCCCC---------CceEEcc--CCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccChhheeecCC-E
Confidence 9997432 22 21111 0111110 0123445541 3433345442222333222 3488999 9
Q ss_pred EEEeCCC-cee-----eCCHHHHHHHhcCCcCC
Q psy8155 591 YYLSSKG-VYE-----ELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 591 g~~d~d~-G~l-----~i~GR~~d~I~~~G~~v 617 (617)
|++|+ + |++ +|+||.||+||++|+||
T Consensus 314 ~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v 345 (443)
T 2y4o_A 314 TALLP-PTARAMRRLAKITGRSDDMLIVRGVNV 345 (443)
T ss_dssp ECEEC-CSSSSSCEECCCCEESSCCEEETTEEE
T ss_pred EEEcC-CCCCCccccCccccccCCeEEECCEEE
Confidence 99999 7 887 99999999999999986
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=280.37 Aligned_cols=234 Identities=13% Similarity=0.039 Sum_probs=174.9
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcc-hhhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPL-YHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~~L~~G~~lv 444 (617)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ +|..++ ..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 34678999999999999999999999999987765443 36789999999999998 566554 56788999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..+++.+++.|+++++|++.++|+++..|++....... .++++|.++ ||++++++.++|.+.++. +++|.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence 98888999999999999999999999999999875332222 247888776 888999999999999976 7999999
Q ss_pred ccccceE-EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccCCccchhhhHHHhh----cCCCCCccCCee
Q psy8155 521 ATEGMAA-ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEMTGTYKLKKLDLQK----EGFDPNVIQDRL 590 (617)
Q Consensus 521 ~TE~~~~-v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~t~~GK~dr~~L~~----~g~~~~~TGD~l 590 (617)
+||+... +........ ....+|. -...+.+++. +|....|.+--+.+.+ .+| |+||| +
T Consensus 244 ~TE~~g~~~~~~~~~~~-------~g~~~~~--~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~~~~~--y~TGD-l 311 (437)
T 2y27_A 244 LSEVMGPGVASECVETK-------DGPTIWE--DHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIR--YRTRD-L 311 (437)
T ss_dssp ETTTTEEEEEECCTTTC-------SSCEECT--TTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCCS--EEEEE-E
T ss_pred chhhcCCeeEEecCCCC-------CceeEcc--CceEEEEEcCCCCCCCCCCCccEEEEecCCcCCchhhe--eecCC-E
Confidence 9998432 331111100 0011110 0123444441 3333345442222222 345 88999 9
Q ss_pred EEEeC-CCcee-----eCCHHHHHHHhcCCcCC
Q psy8155 591 YYLSS-KGVYE-----ELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 591 g~~d~-d~G~l-----~i~GR~~d~I~~~G~~v 617 (617)
|++|+ + |++ +|+||.||+||++|+||
T Consensus 312 ~~~~~~~-G~~~~~i~~i~GR~~d~i~~~G~~v 343 (437)
T 2y27_A 312 TRLLPGT-ARTMRRMEKITGRSDDMMIVRGVNV 343 (437)
T ss_dssp ECEECCS-SSSSCEECCCCEEGGGCEEETTEEE
T ss_pred EEEeCCC-CCCccccCccccccCCeEEECCeEE
Confidence 99999 6 986 99999999999999986
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=234.76 Aligned_cols=235 Identities=14% Similarity=0.059 Sum_probs=161.3
Q ss_pred CCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcc-hhhHHHHHHHHHHhHcCcEEEE
Q psy8155 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPL-YHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 370 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~~L~~G~~lvi 445 (617)
..++++++|+|||||||+||||+++|+++.+...+.. ..+++.++|++++.+|+ +|..++ ...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEE
Confidence 4678999999999999999999999999999888654 45677899999999999 898886 55666799999 777
Q ss_pred cCCCCHH-----------------------HHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCH
Q psy8155 446 RKKFSAS-----------------------NYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRP 500 (617)
Q Consensus 446 ~~~~d~~-----------------------~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~ 500 (617)
...+||. .+++.|+++++|++.++|+++..|++........+++||.++ ||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7778888 888899999999999999999999877433334567898876 889999
Q ss_pred HHHHHHH-HHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCC-CCCcC-cEEEEeec-----ccCCccchhh
Q psy8155 501 QIWSEFV-DRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALP-SYARP-LFIRCLRE-----VEMTGTYKLK 572 (617)
Q Consensus 501 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp-~~~~P-~~~~~~~~-----lP~t~~GK~d 572 (617)
++.++|. +.||.++++|.||+||+.......... .++..+. ....| ..+.+++. +|....|.+-
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--------~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--------SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--------TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--------cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence 9999999 899666899999999987554421110 0111100 00022 24555553 3445556654
Q ss_pred hHHHhhcCC-CCCccCCeeEEEeCC-Cc-------eeeCCHHHHHHHhcCCc
Q psy8155 573 KLDLQKEGF-DPNVIQDRLYYLSSK-GV-------YEELTPEVYKDLVQGNI 615 (617)
Q Consensus 573 r~~L~~~g~-~~~~TGD~lg~~d~d-~G-------~l~i~GR~~d~I~~~G~ 615 (617)
-+.|.++.+ ..|+||| ++++.+. +| .+..++|.+++.|+.|+
T Consensus 318 vt~l~~~~~l~ry~tgD-~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLSPWAFYPRVAERD-TAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEETTEEEEEEEEEE-EEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcCcccccccccCCc-eEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 344443333 3367999 9888765 22 45678899999999885
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-16 Score=173.09 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=127.6
Q ss_pred EEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccCCCCc
Q psy8155 29 IIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSDPPKN 103 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~~~r~ 103 (617)
..+.|+++|+|++||...+. +++||+|+||+|+|++++++.+|.++|+++++...++++||++|| .+++.|+
T Consensus 345 ~~~~dv~~g~~~~gR~~~~~---~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~ 421 (520)
T 2jgp_A 345 AGQEDIIVGTPITGRSHADL---EPIVGMFVNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARD 421 (520)
T ss_dssp HTCSCEEEEEEECCCCSGGG---TTCCSCCCEEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCC
T ss_pred cCCCCeEEEeccCCCCchhh---hccEEeeeeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCC
Confidence 45679999999999998676 999999999999999999999999999999999999999999999 6778888
Q ss_pred cccCcCCcccc----------CCCCccccc-cCCCC--Cccccccccccccc-----chhhhhhhhhccchhhhcccEEE
Q psy8155 104 TTYNKKGLCSR----------CEPGVFIGK-IVPSN--PARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSGDLLV 165 (617)
Q Consensus 104 ~~~~~l~~~~~----------~~~gl~~~~-~~~~~--~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~ 165 (617)
...+|+|++.. ..+|+.+.. ..... .++|||++.+.+.+ ..+|.+++|+.++++.+..+|..
T Consensus 422 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~ 501 (520)
T 2jgp_A 422 LSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLT 501 (520)
T ss_dssp TTSCSSCSEEEEEECCCCSCCCCSSEEEEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEecCCCccccCCCceeEEeecCCCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHH
Confidence 88888888611 114444444 22333 78999999987654 35899999999999999999998
Q ss_pred EeccccceeecccCCCcccc
Q psy8155 166 MDKWGYLYFKDRTGDTFPAL 185 (617)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l 185 (617)
++ ..++.+|+.++.+++++
T Consensus 502 lL-~~l~~~p~~~l~~l~ll 520 (520)
T 2jgp_A 502 IA-ASIVQNPHIRLGEIDML 520 (520)
T ss_dssp HH-HHHHHCTTCBGGGCCCC
T ss_pred HH-HHHHhCccCchhhcCCC
Confidence 87 66778888888887764
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-15 Score=163.23 Aligned_cols=166 Identities=7% Similarity=-0.161 Sum_probs=110.2
Q ss_pred EEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccc--cccccccccchhhhhhhhhhcCCccc----c----c
Q psy8155 29 IIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARA--YLGYVNEKDSAKKIVTDVFEIGDSAF----L----S 98 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~--~~~f~~ll~~v~~~~~~a~~hqd~Pf----~----~ 98 (617)
..+.|+++|+|++||...+. +++||+|+||+|+|+++++ +.+|.++++++++...++++| ++|| . +
T Consensus 270 ~g~~dv~~g~~~~gR~~~~~---~~~vG~f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l 345 (493)
T 4hvm_A 270 TGKDSLYLSTEVDLRDHLQL---GSVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDL 345 (493)
T ss_dssp ---CEEEEEEEEEHHHHTTC---CSBCSCCEEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHT
T ss_pred CCCCCEEEEeeccCCCCcch---hcCeEeeeceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhh
Confidence 34459999999999987666 9999999999999999999 999999999999999999999 9999 3 5
Q ss_pred CCCCccccCcCCccccC------------------CCCccccccCC---------------CCCcccc---ccccccccc
Q psy8155 99 DPPKNTTYNKKGLCSRC------------------EPGVFIGKIVP---------------SNPARAY---LGYVNEKDS 142 (617)
Q Consensus 99 ~~~r~~~~~~l~~~~~~------------------~~gl~~~~~~~---------------~~~~~~d---l~~~~~~~~ 142 (617)
++.++...+|+|++... .+|+.+..... .+.++|| |.+.+.+.+
T Consensus 346 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~ 425 (493)
T 4hvm_A 346 GVVTPPRVAARWDVAVHLCRNAPSSSLTRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELG 425 (493)
T ss_dssp TSCBTTBTTGGGCEEECC--------------------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEET
T ss_pred CcccCCCCCcceeEEEEEEecCCccccccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeC
Confidence 67788888888886211 12343332111 2346788 887776654
Q ss_pred -----chhhhhhhhhccchhhhcccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHH
Q psy8155 143 -----AKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAA 200 (617)
Q Consensus 143 -----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (617)
..+|.+++| .++++.+..+|..++ ..++.+|+.++.+++++++.++......++..
T Consensus 426 ~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L-~~~~~~p~~~l~~l~ll~~~~~~~~~~~~~~~ 486 (493)
T 4hvm_A 426 EDMVIVLDQRRTHP-AGGGSALLDGLDAAM-AQAVADPSAPLPHSTVDTTTQSTVDKDTVDRN 486 (493)
T ss_dssp TEEEEEEEECC--------CHHHHHHHHHH-HHHHHCTTSBCCC-------------------
T ss_pred CeEEEEEEEccccC-HHHHHHHHHHHHHHH-HHHHhCCCCccccCCCCCHHHHHHHhhhhccc
Confidence 358999999 889999999999888 77788999999999999999988766655443
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-14 Score=151.00 Aligned_cols=144 Identities=8% Similarity=-0.042 Sum_probs=108.6
Q ss_pred eccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccCCCCcccc
Q psy8155 32 VDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSDPPKNTTY 106 (617)
Q Consensus 32 ~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~~~r~~~~ 106 (617)
.|+++|+|++||...+. +++||+|+|++|+|++++++.+|.++++++++...++++||++|| .++..+ ..
T Consensus 252 ~dv~ig~~~~~R~~~~~---~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~--~~ 326 (436)
T 1l5a_A 252 DAPWLWLPFMNRWGSVA---ANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNA--EQ 326 (436)
T ss_dssp TCCEEEEEECCCTTSGG---GGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCT--TC
T ss_pred CceEEeeecccCCChHH---hcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccc--cC
Confidence 79999999999998777 999999999999999999999999999999999999999999999 333332 23
Q ss_pred CcCCcc--------ccCCCCccccc-cCCCCCccccccccccc-cc-----chhhhhhhhhccchhhhcccEEEEecccc
Q psy8155 107 NKKGLC--------SRCEPGVFIGK-IVPSNPARAYLGYVNEK-DS-----AKKIFTDVFEIGDSAFLSGDLLVMDKWGY 171 (617)
Q Consensus 107 ~~l~~~--------~~~~~gl~~~~-~~~~~~~~~dl~~~~~~-~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 171 (617)
+|+|++ ....+|+.+.. ......++ ||.+.+.+ .+ ..+|.+++|+.++++.+..+|..++ ..+
T Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l-~~l 404 (436)
T 1l5a_A 327 SYFMSPFINILPFESPHFADCQTELKVLASGSAE-GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFF-EQL 404 (436)
T ss_dssp CBCCCSEEEEECCCCCCCTTCEEEEEEEEECCCC-SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHH-HHH
T ss_pred CCccceEEEeeccCccccCCCeeEEEecCCCCcc-ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHH-HHH
Confidence 444443 11224444433 22233444 88888763 22 3489999999999999999888776 555
Q ss_pred cee---ecccCCCc
Q psy8155 172 LYF---KDRTGDTF 182 (617)
Q Consensus 172 ~~~---~~~~~~~~ 182 (617)
+.+ |+.++.++
T Consensus 405 ~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 405 LARFQQVEQDVARL 418 (436)
T ss_dssp HHHHHTTTTCHHHH
T ss_pred HhccCCCcccHHHH
Confidence 566 66666654
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-10 Score=125.36 Aligned_cols=138 Identities=8% Similarity=-0.055 Sum_probs=96.5
Q ss_pred EEEeccCCCccccCCCCC-cccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc----ccCC---
Q psy8155 29 IIRVDPVTSEPIRNKKGL-CTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF----LSDP--- 100 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~-~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf----~~~~--- 100 (617)
..+.|+++|+|++||... +.++.+++||+|+|++|+|++++++.+|.+++++|++.+.++ .||++|| .+..
T Consensus 276 ~~~~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~-~~~~~~~~~~~~l~~~~~ 354 (466)
T 2xhg_A 276 SKLAQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVLLDLKQTAPLSDYIKLTKENMRKI-PRKGIGYDILKHVTLPEN 354 (466)
T ss_dssp HCCSEEEEEEEECCCCSCSTTCCCTTCCSCCCEEEEEEEECSCCCSHHHHHHHHHHHHHHS-GGGGTHHHHHHHTSCGGG
T ss_pred hCCCceEEEecCCCCCccccCCCccccccceeeeccEEEecCCCCCHHHHHHHHHHHHHhC-ccCCcccceeeecccccc
Confidence 456799999999999852 112339999999999999999999999999999999998775 9999999 2222
Q ss_pred --CCc------cccCcCCcccc--CCCCccccccC--------------CCCCccccccccccccc-----chhhhhhhh
Q psy8155 101 --PKN------TTYNKKGLCSR--CEPGVFIGKIV--------------PSNPARAYLGYVNEKDS-----AKKIFTDVF 151 (617)
Q Consensus 101 --~r~------~~~~~l~~~~~--~~~gl~~~~~~--------------~~~~~~~dl~~~~~~~~-----~~~~~~~~f 151 (617)
.+. ++|+.+...+. ..+++...... +...++|||++.+.+.+ ..+|.+++|
T Consensus 355 ~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~~~~ 434 (466)
T 2xhg_A 355 RGSLSFRVQPEVTFNYLGQFDADMRTELFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSSEQY 434 (466)
T ss_dssp STTCCCCCCCSEEEEEEEECCTTCSSSSCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEETTTS
T ss_pred cccccccCCCeEEEeecCcccccccCCceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEEChhhC
Confidence 122 22332211111 11333322210 12334889988875433 358999999
Q ss_pred hccchhhhcccEEEEe
Q psy8155 152 EIGDSAFLSGDLLVMD 167 (617)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (617)
+.++++.+..+|..++
T Consensus 435 ~~~~i~~l~~~~~~~L 450 (466)
T 2xhg_A 435 REESIQQLSQSYQKHL 450 (466)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988877555
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-09 Score=109.46 Aligned_cols=58 Identities=9% Similarity=-0.140 Sum_probs=52.3
Q ss_pred EeccCCCccccCCCC-------CcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCcc
Q psy8155 31 RVDPVTSEPIRNKKG-------LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSA 95 (617)
Q Consensus 31 ~~D~~~G~pva~R~~-------~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~P 95 (617)
+.|+++|+|++||.. .+. +++||+|+|+||+|. +.+|.++++++++.+.++++||++|
T Consensus 257 ~~~v~~g~~~~~R~~~~~~~~~~~~---~~~vG~f~n~lp~~~----~~~~~~~l~~v~~~~~~~~~~~~~~ 321 (422)
T 1q9j_A 257 HVPIPYVYPVDLRFVLAPPVAPTEA---TNLLGAASYLAEIGP----NTDIVDLASDIVATLRADLANGVIQ 321 (422)
T ss_dssp SCCEEEEEEEETTTTSSSCCCTTTB---SCCEEEEEEEECCCS----SCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CceEEEeeeeecccccCCCCChhhh---hhhheeeeeeeeccC----CCCHHHHHHHHHHHHHHHHhcCeee
Confidence 458999999999986 556 999999999999876 4689999999999999999999995
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-06 Score=91.74 Aligned_cols=314 Identities=12% Similarity=-0.008 Sum_probs=162.8
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHH-HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVC-LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iv-a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+..... ..++.+++++...+|-+.. +.. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 5677777653 245899988766655443 3478899999998886533 333 578889999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC---CCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG---SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+. ...+++...+++.++.++...+.....+........ ...+.+......-. ......+..
T Consensus 257 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~-------~~~~~~~~~-------- 320 (539)
T 1mdb_A 257 PS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS-------AEAARRVKA-------- 320 (539)
T ss_dssp SS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCC-------HHHHTTHHH--------
T ss_pred CC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCC-------HHHHHHHHH--------
Confidence 54 677889999999999999998877766544322111 12233333221100 000000000
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC--CCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.. .-. ++-.-|+|-. ++..+....... ......| +.....+...-+ .+- .. +--.=|.+
T Consensus 321 ---~~--~~~--~~~~YG~TE~--~~~~~~~~~~~~--~~~~~~G~p~~~~~~~~i~d~----~~~---~~-~~g~~GEl 381 (539)
T 1mdb_A 321 ---VF--GCT--LQQVFGMAEG--LVNYTRLDDPEE--IIVNTQGKPMSPYDESRVWDD----HDR---DV-KPGETGHL 381 (539)
T ss_dssp ---HT--CSE--EEEEEECTTS--CEEECCTTSCHH--HHHHCCCEESSTTCEEEEECT----TSC---BC-CTTCCEEE
T ss_pred ---Hh--CCc--EEEEEcCCCC--cccccCCCCcHH--hcCCCCCcccCCCceEEEECC----CCC---CC-cCCCcceE
Confidence 00 011 2222255542 222221100000 0001111 111111111000 000 00 00011444
Q ss_pred EEcCC-------CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC----ccCceeeeeccCCCHHHHHHHHHHcCc
Q psy8155 444 VIRKK-------FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED----KAHNVRLMFGNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 444 vi~~~-------~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----~l~~lr~v~Ge~l~~~~~~~~~~~~~~ 512 (617)
++... .+++.-.+.+...+ ++-|-.+.. + .+.... +...+-.+.|+.+.+..++.....+|.
T Consensus 382 ~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~-~---~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 454 (539)
T 1mdb_A 382 LTRGPYTIRGYYKAEEHNAASFTEDG---FYRTGDIVR-L---TRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454 (539)
T ss_dssp EEECTTSCSSCTTCHHHHHHHBCTTS---CEEEEEEEE-E---CTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTT
T ss_pred EeeCcccchhhcCChhhhhhhccCCC---CeecCceEE-E---CCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCC
Confidence 44321 14443333221111 111111100 0 000000 001111122888999999998887775
Q ss_pred cccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCccchhhhHHHhhc
Q psy8155 513 AQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 513 ~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~ 579 (617)
..=.-.+|.. |. .++++..+...+.++++++++++ ||.||+|..+.+++++|+|++||+||++|++.
T Consensus 455 V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 528 (539)
T 1mdb_A 455 VHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA 528 (539)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHH
T ss_pred cceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHH
Confidence 4222233321 22 44555445567889999999998 99999999999999999999999999999853
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=4e-06 Score=92.79 Aligned_cols=97 Identities=9% Similarity=-0.028 Sum_probs=71.1
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH--HHHH-HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVC-LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~--~~iv-a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+...... .++.+++++..+++-+. ++.. .+++.+..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4677877642 3458998887666555443 47889999999988543 3333 478888999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+. .....+...+++.++.++...+.....+..
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHH
Confidence 55 567778889999999999998877665544
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=89.78 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=72.0
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHH---HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVC---LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv---a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+...+. ..++.+++++...+|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4677887653 245899988776665544 4588999999999886544332 478889999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+. ...+++...+++.++..+...+.....+..
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 54 567788889999999999998876655443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=88.57 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=53.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-C-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-D-INKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++......|.+.=.-.+|.. |. .++++ . +....+.++++++++++||.||+|..+.+++++|+|
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 492 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRN 492 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCC
Confidence 8889999999988877754323333322 22 44454 2 244667889999999999999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||+||++|+++
T Consensus 493 ~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 493 DMGKIMKRALNRD 505 (505)
T ss_dssp -------------
T ss_pred CCcCeeHHhhccC
Confidence 9999999999864
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=97.87 E-value=9.3e-06 Score=87.83 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++.++...+.+++++++.++||.||+|..+.+++++|+|++
T Consensus 420 G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 499 (517)
T 3r44_A 420 GENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPT 499 (517)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTT
T ss_pred CEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCC
Confidence 8889999999988877754222233321 22 33444566678889999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||+||++|++.
T Consensus 500 GKi~R~~L~~~ 510 (517)
T 3r44_A 500 GKILKTVLREQ 510 (517)
T ss_dssp CCBCHHHHHHH
T ss_pred cCccHHHHHHH
Confidence 99999999875
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=86.11 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=68.1
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-.+|. .|. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 406 G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 485 (503)
T 4fuq_A 406 GFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNT 485 (503)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCT
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCc
Confidence 888999999998888775422222222 122 33444 55667888999999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||+||++|++.-.
T Consensus 486 ~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 486 MGKVQKNVLRETYK 499 (503)
T ss_dssp TSCBCHHHHHHHTT
T ss_pred ccceeHHHHHHHHH
Confidence 99999999987643
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-05 Score=86.64 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....+|...=.-.+|. .|. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 441 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~ 520 (536)
T 3ni2_A 441 GFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAP 520 (536)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCT
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCC
Confidence 888999999998888776422223332 122 34444 55667788999999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||+||++|++.
T Consensus 521 ~GKi~R~~L~~~ 532 (536)
T 3ni2_A 521 SGKILRKNLKEK 532 (536)
T ss_dssp TSCBCHHHHHTC
T ss_pred CCCeeHHHHHHH
Confidence 999999999864
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=84.99 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=66.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.+ +||.||+|..+.+++++|+|
T Consensus 409 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t 488 (504)
T 1t5h_X 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKN 488 (504)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCC
Confidence 8889999999988877754222333322 22 34444 44556788999999998 99999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|++|++.
T Consensus 489 ~~GKi~r~~L~~~ 501 (504)
T 1t5h_X 489 ALNKVLRRQLVQQ 501 (504)
T ss_dssp TTSCBCHHHHHHH
T ss_pred CCCCEeHHHHHHH
Confidence 9999999999864
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-05 Score=87.35 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCCCC
Q psy8155 223 NKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINHNL 292 (617)
Q Consensus 223 ~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp~~ 292 (617)
+.+|++.. +-.+|.+.+...+..++.. .++.+++++..++|-.-.+ +..++..+..|+..+.++ .+
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~ 255 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MF 255 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SC
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CC
Confidence 67776542 3458999988777666554 4788999999888864432 333677788899988876 56
Q ss_pred ChHHHHHHHHhcCceEEEEccchHHHHHHH
Q psy8155 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEI 322 (617)
Q Consensus 293 p~~~l~~il~~~~~~~vl~~~~~~~~~~~~ 322 (617)
..+.+...+++.++.++...+.....+...
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 285 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLVNT 285 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHHhh
Confidence 788899999999999999988877665544
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.2e-06 Score=88.07 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.....|| |+||| +|++|+| |+ +|+||+||+||++|+||
T Consensus 223 ~~~~~g~--~~TGD-lg~~d~~-g~-~~~GR~dd~Ik~~G~~v 260 (358)
T 4gs5_A 223 AVTNGQT--VQTND-LVEIHGN-AF-QWIGRADNVINSGGVKI 260 (358)
T ss_dssp GGGTTCC--EEEEE-EEEECSS-EE-EEEEEGGGEEEETTEEE
T ss_pred ccccCcc--eecCC-ccccccC-ce-EEcccccCeEEECCEEE
Confidence 3556788 78999 9999997 85 55699999999999986
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-05 Score=86.55 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|+.+.+..++.....++...=.-.+|.. |..++++......+.++++++++++||.||+|..+.+++++|+|++|
T Consensus 437 G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~G 516 (563)
T 1amu_A 437 GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNG 516 (563)
T ss_dssp TEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTS
T ss_pred CEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCc
Confidence 8889999999888877753222223321 23333333334567889999999999999999999999999999999
Q ss_pred hhhhHHHhhcCC
Q psy8155 570 KLKKLDLQKEGF 581 (617)
Q Consensus 570 K~dr~~L~~~g~ 581 (617)
|++|++|++...
T Consensus 517 Ki~r~~L~~~~~ 528 (563)
T 1amu_A 517 KIDRKQLPEPDL 528 (563)
T ss_dssp SBCGGGSCCCCC
T ss_pred ChhHHhcCCccc
Confidence 999999987644
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.8e-06 Score=93.12 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred cchhhhHHHh---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 568 TYKLKKLDLQ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 568 ~GK~dr~~L~---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|+.++...+ .+|| |+||| +|++|+| |+++|+||.||+||++|+||
T Consensus 360 ~gY~~~~~~t~~~~~g~--~~TGD-l~~~~~~-G~l~~~GR~dd~ik~~G~~v 408 (501)
T 3ipl_A 360 NGYLYPTDLTGTFENGY--FNTGD-IAEIDHE-GYVMIYDRRKDLIISGGENI 408 (501)
T ss_dssp SCCSBSTTCCCSEETTE--EEEEE-EEEECTT-SCEEEEEECCCCEECSSCEE
T ss_pred hhhCcChhhcchhcCCc--eecCC-EEEEcCC-CeEEEEccccceEEECCEEE
Confidence 4555444333 4577 78999 9999998 99999999999999999986
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.6e-05 Score=81.72 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|.+.+...+..+... ...++.+++++....+-+... +..+++.+..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4677777653 3458999887654433321 125778888888877765443 4567788889999887765
Q ss_pred C--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 291 N--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 291 ~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
. ...+++...+++.++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 2567888899999999998887766543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=97.59 E-value=9.3e-06 Score=87.63 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 486 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDA 486 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCC
Confidence 8888888888877766653222223221 22 33333 44556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||+||++|++...
T Consensus 487 ~GKidr~~Lr~~~~ 500 (509)
T 3ivr_A 487 KGAIDRAAVKTAHG 500 (509)
T ss_dssp --------------
T ss_pred CCCccHHHHHHHHh
Confidence 99999999998765
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=6.6e-05 Score=80.97 Aligned_cols=96 Identities=6% Similarity=0.124 Sum_probs=70.6
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp 290 (617)
.++.+|++.. +-.+|.+.+...+..++ ...++.+++++..+++-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4677777652 34589988876655544 346788999999998865433 4567888999999887765
Q ss_pred C--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 291 N--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 291 ~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
. ...+.+...+++.++.++...+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4577888899999999999887766543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=9e-05 Score=80.64 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=67.1
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCc-EEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPL-FIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~-~~~~~~~lP~t 566 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.++||.||+|. .+.+++++|+|
T Consensus 448 G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t 527 (548)
T 2d1s_A 448 GYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKG 527 (548)
T ss_dssp TCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBC
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCC
Confidence 8889999999988887754223333322 33 34444 45556788999999999999999999 99999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|++|++.
T Consensus 528 ~~GKi~r~~L~~~ 540 (548)
T 2d1s_A 528 LTGKIDGRAIREI 540 (548)
T ss_dssp TTSCBCHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 9999999999864
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=6.9e-05 Score=80.83 Aligned_cols=97 Identities=8% Similarity=0.081 Sum_probs=71.6
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecC
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALIN 289 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpld 289 (617)
..|+.+|++.. +-.+|++.+...+.... ...++.+++++..+++-+..+ +..+++.+..|+..+.++
T Consensus 141 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp CCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 35677777653 34589988876655443 346889999999999865332 456788899999998887
Q ss_pred CC--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 290 HN--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 290 p~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
+. ...+.+...+++.++.++...+.....+
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 64 4677888899999999999887766543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=97.50 E-value=1.4e-05 Score=87.54 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=70.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP-EFVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~-~~iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|.+.+..... .....++.+++++..+++-+. .....+++.+..|+..+....
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 5677887663 34688887743221 123457889999999888643 345567888899998887764
Q ss_pred -CCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 291 -NLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 291 -~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
....+++...+++.++.++...+.....+..
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4567889999999999999988877766544
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=97.49 E-value=9.9e-05 Score=79.93 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=61.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc----c-cceEEe-CCCCC-C--CHHHHHHHHhhcCCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT----E-GMAAIL-DINKS-L--DVSAVSEGIKKALPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T----E-~~~~v~-~~~~~-~--~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~ 565 (617)
|+.+.+..++.....++...=.-.+|.. | ..++++ .++.. . ..+++++++.++||.||+|..+.+++++|+
T Consensus 436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 515 (529)
T 2v7b_A 436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPK 515 (529)
T ss_dssp --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCB
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCC
Confidence 8889999999988877754333334431 2 234444 32221 1 245799999999999999999999999999
Q ss_pred CccchhhhHHHhh
Q psy8155 566 TGTYKLKKLDLQK 578 (617)
Q Consensus 566 t~~GK~dr~~L~~ 578 (617)
|++||++|++|++
T Consensus 516 t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 516 TATGKIQRFKLRE 528 (529)
T ss_dssp CTTSCBCHHHHHC
T ss_pred CCccchhHHhHhh
Confidence 9999999999986
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.4e-05 Score=90.41 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|..+.+..++.....++.++=.-..+. .+. +++++. ....+.++++++++++||.||+|..+++++++|+|+|
T Consensus 868 G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~-~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~ 946 (1304)
T 2vsq_A 868 GHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVN-RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTN 946 (1304)
T ss_dssp TEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEEC-SSSSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSS
T ss_pred CEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeC-CCCCCHHHHHHHHHHhChHhhhccEEEEecccCCCCC
Confidence 888999999888888775421112221 122 344443 3367789999999999999999999999999999999
Q ss_pred chhhhHHHhhcC
Q psy8155 569 YKLKKLDLQKEG 580 (617)
Q Consensus 569 GK~dr~~L~~~g 580 (617)
||+||++|++..
T Consensus 947 GKidR~~L~~~~ 958 (1304)
T 2vsq_A 947 GKVNKRLLPKPD 958 (1304)
T ss_dssp CSSCCSCCCCCC
T ss_pred cccCHhhcCCcc
Confidence 999999997653
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=5.7e-05 Score=81.15 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=31.2
Q ss_pred CCCCCccCCeeEEEeC--C-CceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS--K-GVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~--d-~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+... + ...+.|+||.||+|+++|+||
T Consensus 396 GL~RYr~GD-~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl 435 (581)
T 4eql_A 396 GLYRMRVGD-IVLVTGFYNNAPQFKFVRRENVVLSIDSDKT 435 (581)
T ss_dssp SCCSEECCE-EEEEEEEETTEEEEEEEEETTEEECSSSCCE
T ss_pred ceeeEEcCC-EEEEcccCCCCcEEEEEEecCCEEEeeeeEC
Confidence 555578999 998885 2 368999999999999999986
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=80.80 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=66.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++.+.=.-.+|.. |. .++|+ .++...+ .++|+++++++||+||+|..+.+++++|
T Consensus 524 G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 603 (652)
T 1pg4_A 524 GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603 (652)
T ss_dssp TEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC
Confidence 8889999999888887754222233321 22 44444 3333333 4689999999999999999999999999
Q ss_pred CCccchhhhHHHhhcCCCC-CccCCeeEEEeC
Q psy8155 565 MTGTYKLKKLDLQKEGFDP-NVIQDRLYYLSS 595 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~~~-~~TGD~lg~~d~ 595 (617)
+|++||++|++|++.--.. ...|| ...+.+
T Consensus 604 ~T~sGKi~R~~L~~~~~~~~~~~~~-~~~l~~ 634 (652)
T 1pg4_A 604 KTRSGKIMRRILRKIAAGDTSNLGD-TSTLAD 634 (652)
T ss_dssp BCTTSCBCHHHHHHHHHTC-----------CC
T ss_pred CCCCccchHHHHHHHHhCCCCCCCC-ccccCC
Confidence 9999999999998642211 12466 555543
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.35 E-value=9.2e-05 Score=79.73 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=31.4
Q ss_pred CCCCCccCCeeEEEeC---CCceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS---KGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~---d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+.+. ....+.|+||.|++|+++|+||
T Consensus 408 GL~RYr~GD-~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki 447 (609)
T 4b2g_A 408 GLYRYRVGD-ILRVTGFHNSAPQFHFVRRKNVLLSIDSDKT 447 (609)
T ss_dssp SCCSEEEEE-EEEEEEEETTEEEEEEEEETTCCBCSSSCCB
T ss_pred hhhheecCC-EEEEeecCCCCcEEEEEEecCCeEEccccCC
Confidence 555688999 998883 2378999999999999999986
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=79.99 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|+.+.+..++......|.+.=.-.+|.. |. .++++ .++...+ .++|+++++++||.||+|..+.+++++|
T Consensus 482 G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 561 (580)
T 3etc_A 482 GYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELP 561 (580)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCC
Confidence 8889999999988877754222233321 22 34444 3333333 3689999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|++||++|++|++.
T Consensus 562 ~t~sGKi~R~~Lr~~ 576 (580)
T 3etc_A 562 KTISGKIRRVEIRDK 576 (580)
T ss_dssp ---------------
T ss_pred CCCCcCCcHHHHHhH
Confidence 999999999999865
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=80.41 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=65.1
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEeC-CCC--C---CCHHHHHHHHhhcCCCCCcCcEEEEeec
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAILD-INK--S---LDVSAVSEGIKKALPSYARPLFIRCLRE 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~~-~~~--~---~~~~~l~~~l~~~Lp~~~~P~~~~~~~~ 562 (617)
|+.+.+..++......|.+.=.-.+|. .|. .++++. ++. . ...+++++++.++||.||+|..+.++++
T Consensus 463 G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 542 (570)
T 3c5e_A 463 GYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542 (570)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEecc
Confidence 888999999998888775422333332 133 344442 221 1 1256899999999999999999999999
Q ss_pred ccCCccchhhhHHHhhcCC
Q psy8155 563 VEMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 563 lP~t~~GK~dr~~L~~~g~ 581 (617)
+|+|++||++|++|++..+
T Consensus 543 lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 543 LPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp CCBCTTCCBCHHHHHHHHT
T ss_pred CCCCCCcCCcHHHHHHHHH
Confidence 9999999999999998765
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=4e-05 Score=83.31 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=32.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++.+.=.-.+|.. |. .++++..+...+.+++++++.+ +||.||+|..+++++++|+|+
T Consensus 442 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~ 521 (541)
T 1v25_A 442 GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 521 (541)
T ss_dssp TEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSBC----------
T ss_pred CEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCC
Confidence 8889998888877776654323334321 33 3333333445667889999999 899999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 522 ~GKi~r~~L~~~ 533 (541)
T 1v25_A 522 AGKFLKRALREQ 533 (541)
T ss_dssp ----CCTTHHHH
T ss_pred ccCeeHHHHHHH
Confidence 999999999875
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00041 Score=77.22 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=63.3
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCC---C-C------HHHHHHHHhhcCCCCCcCcEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKS---L-D------VSAVSEGIKKALPSYARPLFI 557 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~---~-~------~~~l~~~l~~~Lp~~~~P~~~ 557 (617)
|..+.+..++.....++.+.=.-.+|.. |. .++|+ .++.. . + .++|+++++++||+||+|..+
T Consensus 533 G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i 612 (663)
T 1ry2_A 533 GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI 612 (663)
T ss_dssp SCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEE
T ss_pred CEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEE
Confidence 8889999999988877754222233321 33 44444 32222 1 1 468999999999999999999
Q ss_pred EEeecccCCccchhhhHHHhhcCCCC-CccCCeeEEEeC
Q psy8155 558 RCLREVEMTGTYKLKKLDLQKEGFDP-NVIQDRLYYLSS 595 (617)
Q Consensus 558 ~~~~~lP~t~~GK~dr~~L~~~g~~~-~~TGD~lg~~d~ 595 (617)
++++++|+|++||++|+.|++.--.. ..-|| ...+.+
T Consensus 613 ~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~-~~~l~~ 650 (663)
T 1ry2_A 613 ILVDDLPKTRSGKIMRRILRKILAGESDQLGD-VSTLSN 650 (663)
T ss_dssp EECSCCCBCTTSCBCHHHHHHSCC--------------C
T ss_pred EEcCCCCCCCccCchHHHHHHHHcCCCCCCCC-cccccC
Confidence 99999999999999999998753311 02366 544443
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=76.85 Aligned_cols=37 Identities=8% Similarity=-0.127 Sum_probs=30.1
Q ss_pred CCCCCccCCeeEEEeC---CCceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS---KGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~---d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+... ....+.|+||.|++|+++|+||
T Consensus 403 GL~RYr~GD-~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~ 442 (581)
T 4epl_A 403 GLYRYRLGD-VVKVIGFYNNTPQLKFICRRNLILSINIDKN 442 (581)
T ss_dssp SCSSEEEEE-EEEEEEEETTEEEEEEEEETTCCBCSSSCCB
T ss_pred ceeeEEcCC-EEEEecccCCCcEEEEEeecCCeEEeeeeEC
Confidence 455578999 888874 1256999999999999999986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=97.06 E-value=8.7e-05 Score=86.68 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=71.8
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCeEEe
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRP--EFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~--~~iva~lA~~~aG~~~vp 287 (617)
..|+.+|++.. +-.+|.+.+...+........ ..++.+++++...+|-.- .+...++..+..|+..+.
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 35778887653 346899888765443332221 346889999998888543 334557888999999887
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.+ ....+.+...+++.++.++...+.....+..
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHh
Confidence 65 4667889999999999999988876655543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=68.16 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=74.3
Q ss_pred ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEE
Q psy8155 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAF 309 (617)
Q Consensus 232 ~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~v 309 (617)
-.+|.+.+...+..+++.+...|+.+++++..+++- ....+..+++.+..|+..++.++. ..+++...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 358999999888888888988999999999999874 445566778889999999988764 56888899999999999
Q ss_pred EEccchHHHHHHH
Q psy8155 310 IYGAELTDAVQEI 322 (617)
Q Consensus 310 l~~~~~~~~~~~~ 322 (617)
+..+.....+...
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988877665543
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00019 Score=79.23 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=70.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecC-
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALIN- 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpld- 289 (617)
.|+.+|++.. +-.+|.+.+...+. .....++.+++++..+++-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 4677887653 34588887754322 22345788999999998865443 455788899999888764
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.....+.+...+++.++..+...+.....+..
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 24678899999999999999988877666544
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00016 Score=78.81 Aligned_cols=88 Identities=9% Similarity=0.022 Sum_probs=64.3
Q ss_pred ceecHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcC
Q psy8155 232 TEWTAQQVEAYSNRVANFFL-----AQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINHNLRQNSLLHCINIAG 305 (617)
Q Consensus 232 ~~lTy~eL~~~a~~lA~~L~-----~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~ 305 (617)
-.+|++.+...+..++..+. ...+...+++....+.+... +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 35899999888877777654 24567788888777765443 4456778889998887655444567888899999
Q ss_pred ceEEEEccchHHHH
Q psy8155 306 VSAFIYGAELTDAV 319 (617)
Q Consensus 306 ~~~vl~~~~~~~~~ 319 (617)
+..+...+.....+
T Consensus 273 ~t~~~~~P~~l~~~ 286 (562)
T 3ite_A 273 VTHAGIVPSLLDQT 286 (562)
T ss_dssp CCEEEECHHHHHHH
T ss_pred CCEEEcCHHHHhhc
Confidence 99998887755443
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00031 Score=76.40 Aligned_cols=99 Identities=6% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCCeEEecCCC
Q psy8155 222 PNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHN 291 (617)
Q Consensus 222 p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~-~iva~lA~~~aG~~~vpldp~ 291 (617)
++.+|++.. +-.+|.+.+...+......+...++.+++++..++|-+-. -+..+++.+.+|+..+.++ .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 456776542 3458998877665544443333578899999988886533 2455677888999988875 4
Q ss_pred CChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 292 ~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
...+.+...+++.++..++..+.....+..
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 678889999999999999998877665543
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.011 Score=64.53 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=72.2
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH--HHHHHHHHhcCCeEEec
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF--VCLWLGLSKLGVITALI 288 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~--iva~lA~~~aG~~~vpl 288 (617)
..|+.+|++.. +-.+|++.+...+...+. ..++.+++++..++|-+-.+ ...+++.+..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 35677887653 345899988777665544 46889999999999876544 33478889999998887
Q ss_pred CCCC---ChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNL---RQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~---p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.+.. ..+.+...+++.++.++.+.+.....+..
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 6542 46778888999999998887765555443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=2 Score=44.45 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=73.2
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|.+.+...+..+++.+...|+.+++++..+++- ....+..+++.+..|+..+++++. ..+++...+++.++.+++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEE
Confidence 58999998888888888888999999999999885 344455678889999999987764 678889999999999999
Q ss_pred EccchHHHHHHH
Q psy8155 311 YGAELTDAVQEI 322 (617)
Q Consensus 311 ~~~~~~~~~~~~ 322 (617)
..+.....+...
T Consensus 188 ~~Ps~~~~l~~~ 199 (437)
T 2y27_A 188 VTPSYMLSIADE 199 (437)
T ss_dssp ECHHHHHHHHHH
T ss_pred ECHHHHHHHHHH
Confidence 988877665543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=89.99 E-value=2.2 Score=44.18 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|.+.+...+..+++.+...|+.+++++..+++-+ ...+..+++.+..|+..+++++. ..+++...+++.++.++.
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 589999998888888888889999999999998853 44455678889999999988764 678888999999999999
Q ss_pred EccchHHHHHHH
Q psy8155 311 YGAELTDAVQEI 322 (617)
Q Consensus 311 ~~~~~~~~~~~~ 322 (617)
..+.....+...
T Consensus 190 ~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 190 VTPSYMLNLIDE 201 (443)
T ss_dssp ECHHHHHHHHHH
T ss_pred ECHHHHHHHHHH
Confidence 988876665543
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=85.63 E-value=0.31 Score=39.69 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=40.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccc--c-----cccc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCC-CcCcEEEEe-
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFY--G-----ATEG-MAAIL-DINKSLDV---SAVSEGIKKALPSY-ARPLFIRCL- 560 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~Y--G-----~TE~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~-~~P~~~~~~- 560 (617)
|..+.|..++.....+|.. ...| | ..|. .+++. .++...+. .++.+.+.+.+..+ ++|..+.++
T Consensus 11 G~nv~P~eIE~vl~~~p~v--~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~v~~v~ 88 (109)
T 3lax_A 11 GVNIFPIQIETILLQFKEL--GSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPRVKLVP 88 (109)
T ss_dssp TEEECHHHHHHHHHTCTTE--EEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CEEECHHHHHHHHHhCCCc--ccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccceEEEc
Confidence 8889999999988887752 2221 1 1122 33333 33333332 34445555554432 355566666
Q ss_pred -ecccCCccchhhh
Q psy8155 561 -REVEMTGTYKLKK 573 (617)
Q Consensus 561 -~~lP~t~~GK~dr 573 (617)
++||+| +||+.|
T Consensus 89 ~~~lPrt-sGKi~R 101 (109)
T 3lax_A 89 KGALPKS-EGKAVR 101 (109)
T ss_dssp TTCSCCC----CCC
T ss_pred CCeecCC-CCCcch
Confidence 589998 799866
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 617 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-44 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 0.001 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 3e-38 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 0.002 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-37 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 0.004 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-33 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-33 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 8e-33 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 0.004 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 9e-32 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 166 bits (421), Expect = 1e-44
Identities = 61/368 (16%), Positives = 130/368 (35%), Gaps = 29/368 (7%)
Query: 211 ADIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
A+ H + ++ ++E + + +++ R AN L G+KKGD VA+
Sbjct: 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 134
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
+ PE L +++G + ++I ++ CI + I E A + I
Sbjct: 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPL 194
Query: 325 SLGSNVKLFSWSP---------DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ L + + S + L SP + +D
Sbjct: 195 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 254
Query: 376 LIYIYTSGTTGLPKAAVISNHRYY-FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434
L +YTSG+TG PK + + Y + Y + D ++ + G + +
Sbjct: 255 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 314
Query: 435 QALIFGCCVVI----RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--H 488
L G ++ + + V K++ + R L++ +K +
Sbjct: 315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 374
Query: 489 NVRLMF--GNGLRPQIWSEFVDRF--RIAQIGEFYGATE-GMAAILDINKSLDVSAVSEG 543
++R++ G + P+ W + + + + + TE G I + ++++ A S
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434
Query: 544 IKKALPSY 551
+
Sbjct: 435 --RPFFGV 440
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 39.6 bits (92), Expect = 0.001
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 117 PGVFIGKIVPSNP----ARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
G G +V ++ AR G ++ F + + SGD D+ GY
Sbjct: 453 EGATEGNLVITDSWPGQARTLFGD------HERFEQTYFSTFKNMYFSGDGARRDEDGYY 506
Query: 173 YFKDRTGDTF 182
+ R D
Sbjct: 507 WITGRVDDVL 516
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 146 bits (369), Expect = 3e-38
Identities = 64/369 (17%), Positives = 119/369 (32%), Gaps = 20/369 (5%)
Query: 207 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
+L + D A K + E T +V + R+ A G+ GD VA
Sbjct: 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 69
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 70 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
L + + + RV + YT+
Sbjct: 130 RGELKTVQHFVVMDEKAPEGYLAYEEAL-----------GEEADPVRVPERAACGMAYTT 178
Query: 383 GTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
GTTGLPK V S+ L ++ KD +P++H + L+
Sbjct: 179 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 238
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGNGLR 499
V+ + ++ T + + L E + +R L+ G
Sbjct: 239 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298
Query: 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALP-SYARPLFIR 558
P+ +R + ++ + YG TE ++ + ++SE K L P+ +
Sbjct: 299 PRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV 357
Query: 559 CLREVEMTG 567
LR + G
Sbjct: 358 RLRVADEEG 366
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 38.7 bits (89), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 116 EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFK 175
+ G +G++ P GY +++ + T D F +GD+ V D+ GY+ K
Sbjct: 371 KDGKALGEVQLKGPWIT-GGYYGNEEATRSALTP-----DGFFRTGDIAVWDEEGYVEIK 424
Query: 176 DRTGDTF 182
DR D
Sbjct: 425 DRLKDLI 431
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (365), Expect = 3e-37
Identities = 70/343 (20%), Positives = 130/343 (37%), Gaps = 26/343 (7%)
Query: 212 DIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFL-AQGLKKGDSVALM 264
+ HA+++PNK +FE E T +++ +VA + G++KGD+VA+
Sbjct: 63 NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
+ PE + L +S++G I +++ NSL IN I E + I T
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 325 --------SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
V+ T++ S + L + V +D L
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 377 IYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
+YTSG+TG PK S Y + Y +D F+T + G +
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 436 ALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--N 489
L++GC ++ + + S Y+ + ++K T R L + + +
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 490 VRLMF--GNGLRPQIWSEFVDRF--RIAQIGEFYGATEGMAAI 528
+R + G + ++W + ++ I + Y TE + +
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (86), Expect = 0.004
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 114 RCEPGVFIGKIVPSNPARAYL-GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
G + ++ D + + +GD DK GY+
Sbjct: 440 ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY---LNPYPGYYFTGDGAAKDKDGYI 496
Query: 173 YFKDRTGDTF 182
+ R D
Sbjct: 497 WILGRVDDVV 506
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 132 bits (333), Expect = 1e-33
Identities = 52/325 (16%), Positives = 104/325 (32%), Gaps = 24/325 (7%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 80
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
E + L + K G I+ + + + ++ + + L + I +
Sbjct: 81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN 140
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ + ++ VP D IYTSGTT
Sbjct: 141 GQVEIFEEDTIKIREGTNLHVPSKS----------------------TDLAYVIYTSGTT 178
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK ++ + L + KDR + A L +I
Sbjct: 179 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 238
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
K N F +Y + + + + + + G+ P + ++
Sbjct: 239 LKDT--INDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNK 296
Query: 506 FVDRFRIAQIGEFYGATEGMAAILD 530
+ ++ T +
Sbjct: 297 WKEKVTYINAYGPTETTICATTWVA 321
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 132 bits (331), Expect = 2e-33
Identities = 68/327 (20%), Positives = 111/327 (33%), Gaps = 23/327 (7%)
Query: 209 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
G+ + S P + + P ++ YTSGTTG
Sbjct: 123 GARIIFLGDLVRDGEPYS-------YGPPIEDPQREPAQPAF---------IFYTSGTTG 166
Query: 387 LPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444
LPKAA+I L + + + +PLYH G + AL V
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226
Query: 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRL---MFGNGLRPQ 501
+ ++F + V + + T L + L F P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286
Query: 502 IWSEFVDRFRIAQIGEFYGATEGMAAI 528
E V + + YG TE M ++
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAMNSL 313
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 130 bits (328), Expect = 8e-33
Identities = 56/333 (16%), Positives = 105/333 (31%), Gaps = 11/333 (3%)
Query: 207 DLTIADIFREHAVRSPNK-----VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSV 261
D T + + R T + S R+A GL +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 381
+ L K+ TD + S L + + + +
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 195
Query: 382 SGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
SG+TGLPK + + + + + +P +H G +G +
Sbjct: 196 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GN 496
V++ +F + + YK + + + + + N+ + G
Sbjct: 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 314
Query: 497 GLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
L ++ RF + I + YG TE +AIL
Sbjct: 315 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 347
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 37.6 bits (86), Expect = 0.004
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 115 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYF 174
G++ P GYVN ++ + D SGD+ D+ + +
Sbjct: 379 LGVNQ-RGELCVRGPMIM-SGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFI 431
Query: 175 KDRTGDTF 182
DR
Sbjct: 432 VDRLKSLI 439
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 127 bits (319), Expect = 9e-32
Identities = 54/323 (16%), Positives = 112/323 (34%), Gaps = 11/323 (3%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N EF + L +LG + + R + + + A +A+I + SL
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR---SL 140
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
V+ + + L L +E P V D + G+TG
Sbjct: 141 ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPE-----VKSSDVAFLQLSGGSTG 195
Query: 387 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF-GCCVVI 445
L K ++ Y + + LP+ H + +++ G VV+
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 503
S + F + + K T+ + + + D +++++ G +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 504 SEFVDRFRIAQIGEFYGATEGMA 526
F F A +
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVN 338
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 617 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 99.49 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 98.38 | |
| d1q9ja2 | 238 | Polyketide synthase associated protein 5, PapA5 {M | 98.36 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 98.31 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 98.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 97.58 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 97.5 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 97.36 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 97.04 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.3e-53 Score=472.88 Aligned_cols=397 Identities=16% Similarity=0.190 Sum_probs=298.6
Q ss_pred HHHHHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 211 ADIFREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 211 ~~~~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
...++++++.+||++|+++. .+++||+||+++++++|++|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav 154 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence 44677888899999999964 257999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHh--cCCCeEEEEeCCCCCCCCCCCCCcCCcc
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTS--LGSNVKLFSWSPDTDSSSSPVPRSQALS 353 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 353 (617)
++|++|.++.+++.+++++++++++|+++.. .......... .+....++.+..................
T Consensus 155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (643)
T d1pg4a_ 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 234 (643)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhh
Confidence 9999999999999999999999999997642 2333333222 2344556666544322111111111122
Q ss_pred hhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHH-HHHHHHHhCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFL-GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
......... ......+++|++||+|||||||+||||+++|++++.. .......++++++|++++.+|++|+.++.+.
T Consensus 235 ~~~~~~~~~--~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 312 (643)
T d1pg4a_ 235 DLIEKASPE--HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 312 (643)
T ss_dssp HHHTTSCSC--CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHT
T ss_pred hhhcccCcc--cCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHH
Confidence 222222222 1223457899999999999999999999999997654 4455667899999999999999999998777
Q ss_pred HHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHH
Q psy8155 433 IGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWS 504 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~ 504 (617)
++++|++|+++++.+. .++..+++.|++++||++.++|++++.|+++... ...++++||.++ |+++++++++
T Consensus 313 l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~ 392 (643)
T d1pg4a_ 313 LYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 392 (643)
T ss_dssp THHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHH
Confidence 8899999999999763 5899999999999999999999999999987543 345689999887 8999999999
Q ss_pred HHHHHcCc--ccccccccccccceEEeCCC-C--CCCHHHHHHHHhhcCCCCCc--------------CcEEEEeecccC
Q psy8155 505 EFVDRFRI--AQIGEFYGATEGMAAILDIN-K--SLDVSAVSEGIKKALPSYAR--------------PLFIRCLREVEM 565 (617)
Q Consensus 505 ~~~~~~~~--~~l~n~YG~TE~~~~v~~~~-~--~~~~~~l~~~l~~~Lp~~~~--------------P~~~~~~~~lP~ 565 (617)
++.+.++. +.++|.||+||++..+.... . ..... .+...+|...+ ...+.+.+..|.
T Consensus 393 ~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~g----s~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~ 468 (643)
T d1pg4a_ 393 WYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG----SATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPG 468 (643)
T ss_dssp HHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTT----CCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTT
T ss_pred HHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCC----ccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCc
Confidence 99999863 46999999999966554221 1 11111 12222332211 123444444444
Q ss_pred CccchhhhHH-------HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 566 TGTYKLKKLD-------LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 566 t~~GK~dr~~-------L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...|...... -..+|| ++||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~--~~TGD-l~~~d~d-G~l~i~GR~dd~ik~~G~ri 523 (643)
T d1pg4a_ 469 QARTLFGDHERFEQTYFSTFKNM--YFSGD-GARRDED-GYYWITGRVDDVLNVSGHRL 523 (643)
T ss_dssp CCCEETTCHHHHHHHHHSSSTTS--EEEEE-EEEECTT-SCEEEEEESSSEEEETTEEE
T ss_pred ccccccCChhhchhhhcccCCCe--EEcCC-EEEECCC-ceEEEecccccEEEECCEEE
Confidence 4444332111 123677 77999 9999997 99999999999999999986
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-52 Score=465.71 Aligned_cols=400 Identities=19% Similarity=0.218 Sum_probs=298.9
Q ss_pred HHHHHHHHhhCCCceEEEEC------CceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 211 ADIFREHAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 211 ~~~~~~~a~~~p~~~Al~~~------~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
+..++++|+++||++|+++. .+++||+||+++++++|++|+ ++|+++||+|+|+++|++++++++|||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 77888999999999999964 368999999999999999997 67999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
+++|++|.++.+++.++++++++++++++... ...+.+.......................... ......
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 220 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHA-PRDLDW 220 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCS-SSEEEH
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccc-cccccc
Confidence 99999999999999999999999999997642 33444444444443444444332211111000 111111
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 433 (617)
..............+..++++++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|+.++.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~ 300 (640)
T d1ry2a_ 221 ATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVV 300 (640)
T ss_dssp HHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTT
T ss_pred cccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHH
Confidence 1111222222233345788999999999999999999999999877654 444567899999999999999999987888
Q ss_pred HHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHH
Q psy8155 434 GQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSE 505 (617)
Q Consensus 434 ~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~ 505 (617)
+++|+.|+++++.+. .++..+++.|+++++|++.++|++++.|.+.... ...++++||.++ |++++++++++
T Consensus 301 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~ 380 (640)
T d1ry2a_ 301 YGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEW 380 (640)
T ss_dssp HHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHH
Confidence 899999999998764 4899999999999999999999999999876543 345689999987 88899999999
Q ss_pred HHHHcCcc--cccccccccccceEEeC--CCCCCCHHHHHHHHhhcCCCCC----------------cCcEEEEeecccC
Q psy8155 506 FVDRFRIA--QIGEFYGATEGMAAILD--INKSLDVSAVSEGIKKALPSYA----------------RPLFIRCLREVEM 565 (617)
Q Consensus 506 ~~~~~~~~--~l~n~YG~TE~~~~v~~--~~~~~~~~~l~~~l~~~Lp~~~----------------~P~~~~~~~~lP~ 565 (617)
|.+.+|.. .+++.||+||+...... .+...... ...++..+|... .+..+.+....|.
T Consensus 381 ~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~--~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~ 458 (640)
T d1ry2a_ 381 YSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMK--PGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPS 458 (640)
T ss_dssp HHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCC--TTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTT
T ss_pred HHHhcCCCcceEEeeecccccccccccccCCCcCCCC--CcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCC
Confidence 99999743 58999999999554431 11110000 001122222221 1122333333455
Q ss_pred CccchhhhHHH-------hhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 566 TGTYKLKKLDL-------QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 566 t~~GK~dr~~L-------~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
...|+.+.... ..+|| ++||| +|++|+| |+|+|+||.||+||++|+||
T Consensus 459 ~~~gy~~~~e~t~~~~~~~~~gw--~~TGD-lg~~d~d-G~l~i~GR~dd~Ik~~G~~I 513 (640)
T d1ry2a_ 459 FARTIWKNHDRYLDTYLNPYPGY--YFTGD-GAAKDKD-GYIWILGRVDDVVNVSGHRL 513 (640)
T ss_dssp SCCEETTCHHHHHHHHTSSSTTS--EEEEE-EEEECTT-CCEEECSCTTSCBCSSSCCB
T ss_pred cccccccCHHHHHhhhccCCCCe--EEcCC-ceeECCC-CCEEEEEcCCCEEEECCEEE
Confidence 55565543332 23477 78999 9999998 99999999999999999997
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=3.9e-50 Score=439.25 Aligned_cols=394 Identities=17% Similarity=0.197 Sum_probs=303.8
Q ss_pred cCCCHHHHHHHHHhhC---CCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 206 KDLTIADIFREHAVRS---PNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~---p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
++.|+.++|.+.++++ |+++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 15 ~~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~ 94 (541)
T d1lcia_ 15 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94 (541)
T ss_dssp CSSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3468999999999887 888899886 56899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhcc--
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE-- 358 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-- 358 (617)
+|+++||+++.++.+++.++|++++++++|++++..+.+.++...++....+++++..... .....+......
T Consensus 95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 169 (541)
T d1lcia_ 95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY-----QGFQSMYTFVTSHL 169 (541)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB-----TTBEEHHHHHHHHS
T ss_pred hCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc-----cccchhhhhhhhhc
Confidence 9999999999999999999999999999999999999999998888887788877653321 111112221111
Q ss_pred ---CCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh---CCCCCCEEEEcCcchhhHHHHHH
Q psy8155 359 ---VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI---GFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
.............++++|||+|||||||.||||+++|++++....+....+ .+.+++++++.+|++|..++ ..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~ 248 (541)
T d1lcia_ 170 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FT 248 (541)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH-HH
T ss_pred cccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccccccc-cc
Confidence 111111122334678999999999999999999999999988777665543 56789999999999998885 66
Q ss_pred HHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHc
Q psy8155 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRF 510 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~ 510 (617)
.+..+..|+.+++....++......+..+++|.+.++|+++..++........++++++.+. |++++++..+++.+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~ 328 (541)
T d1lcia_ 249 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 328 (541)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEeccccccccccccccccc
Confidence 77888999999999999999999999999999999999999999988887777889999887 7889999999999999
Q ss_pred CcccccccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhh
Q psy8155 511 RIAQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLK 572 (617)
Q Consensus 511 ~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~d 572 (617)
+..++++.||+||+...+. .+...... ..++..+|.. .+.+++. + |....|+++
T Consensus 329 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~----~svG~p~~~~----~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~ 400 (541)
T d1lcia_ 329 HLPGIRQGYGLTETTSAILITPEGDDKP----GAVGKVVPFF----EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN 400 (541)
T ss_dssp TCSCCBCEECCGGGSSCSEECCCC---C----CCCBEECTTC----EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETT
T ss_pred CCceeeecCCccccCceEEecCcccCCC----CccccccCCC----EEEEEECCCCcCCCCCCeEEEEEccCccCCeeCC
Confidence 8778999999999965554 21111000 0123333332 2233221 1 333455554
Q ss_pred hHH-----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 573 KLD-----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 573 r~~-----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
... ...+|| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 401 ~~~~~~~~~~~~~~--~~TGD-l~~~~~~-G~~~~~GR~~d~i~~~G~~v 446 (541)
T d1lcia_ 401 NPEATNALIDKDGW--LHSGD-IAYWDED-EHFFIVDRLKSLIKYKGYQV 446 (541)
T ss_dssp BHHHHHHHBCTTSC--EEEEE-EEEECTT-CCEEEC-----CEEETTEEE
T ss_pred ChhhhhhcccCCcc--ccCCC-eeEEcCC-eEEEEeeeecCEEEECCEEE
Confidence 333 335677 78999 9999998 99999999999999999986
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.6e-49 Score=431.20 Aligned_cols=390 Identities=17% Similarity=0.176 Sum_probs=301.3
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECC----ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFEN----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~----~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~a 281 (617)
.+.|++++|++.|+++||++|+++.. +++||+||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 88 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 88 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999852 46999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 282 G~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
|++++|++|.++.+++.++++++++++++++.........+...++.....+...+.... . ....... ...
T Consensus 89 G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~-~~~ 159 (534)
T d1v25a_ 89 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-------G-YLAYEEA-LGE 159 (534)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT-------T-CEEHHHH-CCS
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc-------c-ccccccc-ccc
Confidence 999999999999999999999999999999999999888887777665555554433211 0 0111111 111
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHH--HHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHc
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 439 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~ 439 (617)
........++++++|+|||||||.||||+++|+++++..... ...+....++++++.+|++|..++.. .+.++..
T Consensus 160 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~~~~ 236 (534)
T d1v25a_ 160 --EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL-PYAATLV 236 (534)
T ss_dssp --CCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH-HHHHHHH
T ss_pred --cccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc-cceeeee
Confidence 111234567899999999999999999999999998765443 33445678899999999999988655 4556667
Q ss_pred CcEEEEc-CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 440 GCCVVIR-KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 440 G~~lvi~-~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
|+++++. +.+++..+...+.++++|++.++|+++..++........++++||.++ |++++++..++|.+. +. +++
T Consensus 237 g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~-~i~ 314 (534)
T d1v25a_ 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM-GV-EVR 314 (534)
T ss_dssp TCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT-TC-EEE
T ss_pred cceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh-CC-eee
Confidence 7766665 468999999999999999999999999999877665666789999877 888999999988754 44 799
Q ss_pred ccccccccceEEeCCC--C---CCCHHHHHH---HHhhcCCCCCcCcEEEEeec----c--------------cCCccch
Q psy8155 517 EFYGATEGMAAILDIN--K---SLDVSAVSE---GIKKALPSYARPLFIRCLRE----V--------------EMTGTYK 570 (617)
Q Consensus 517 n~YG~TE~~~~v~~~~--~---~~~~~~l~~---~l~~~Lp~~~~P~~~~~~~~----l--------------P~t~~GK 570 (617)
+.||+||+...+.... . .....+... .++..+|.. .+.++++ + |....|+
T Consensus 315 ~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~----~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY 390 (534)
T d1v25a_ 315 QGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV----RLRVADEEGRPVPKDGKALGEVQLKGPWITGGY 390 (534)
T ss_dssp EEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC----EEEEECTTSCBCCSSSCCCEEEEEESTTSBSSC
T ss_pred eeccccccccceeecccCccccccCccccccccccceeccCCc----EEEEECCCCCCCCCCCCeeEEEEEcCCccccee
Confidence 9999999977666221 1 112221111 122233332 2333322 1 1222344
Q ss_pred hhh-----HHHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 571 LKK-----LDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 571 ~dr-----~~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+. ....++|| ++||| +|++|+| |+++++||.||+||++|+||
T Consensus 391 ~~~~~~t~~~~~~dg~--~~TGD-lg~~~~~-G~l~~~GR~~~~i~~~G~~v 438 (534)
T d1v25a_ 391 YGNEEATRSALTPDGF--FRTGD-IAVWDEE-GYVEIKDRLKDLIKSGGEWI 438 (534)
T ss_dssp BTCHHHHHTTBCTTSC--EEEEE-EEEECTT-CCEEEEEESSCEEEETTEEE
T ss_pred cCChhhhhhhcccCCC--CccCc-eeEECCC-ccEEEecccccEEEECCEEE
Confidence 432 33456788 77999 9999998 99999999999999999986
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2.4e-47 Score=414.61 Aligned_cols=353 Identities=20% Similarity=0.251 Sum_probs=292.0
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHH
Q psy8155 196 FLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275 (617)
Q Consensus 196 ~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~ 275 (617)
.+|++...++.+.||.++|+++|+++||++|++++++++||+||+++++++|++|+++|+++|++|+++++|+.++++++
T Consensus 11 ~~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~ 90 (514)
T d1amua_ 11 AVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90 (514)
T ss_dssp HTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred HhcCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence 34666677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 276 lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
|||+++|++++|++|.++.+++.+++++++++++|++....+.+... ..............
T Consensus 91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~~--------------- 151 (514)
T d1amua_ 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDTI--------------- 151 (514)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCSTT---------------
T ss_pred HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhh----cccccccccccccc---------------
Confidence 99999999999999999999999999999999999998877654322 12122222211110
Q ss_pred hccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
..........+..++++++|+|||||||.||||+++|+++..........++...+++++...|++|..++ ..++.
T Consensus 152 ---~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~ 227 (514)
T d1amua_ 152 ---KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV-WEMFM 227 (514)
T ss_dssp ---TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHH
T ss_pred ---cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccc-ccccc
Confidence 01111111223467899999999999999999999999999999999999999999999999999998885 77888
Q ss_pred HhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHc
Q psy8155 436 ALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRF 510 (617)
Q Consensus 436 ~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~ 510 (617)
++..|+++++... .+....++.+..+.++.+..+|...... ....+++++.+. |+++++++.+++.+.
T Consensus 228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~- 300 (514)
T d1amua_ 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKEK- 300 (514)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTTT-
T ss_pred cccccccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhccc-
Confidence 9999999998764 6778889999999999999999775532 234567787776 888999999888764
Q ss_pred Cccccccccccccc------------------------------------------------------------------
Q psy8155 511 RIAQIGEFYGATEG------------------------------------------------------------------ 524 (617)
Q Consensus 511 ~~~~l~n~YG~TE~------------------------------------------------------------------ 524 (617)
..+++.||+||+
T Consensus 301 --~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~ 378 (514)
T d1amua_ 301 --VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTS 378 (514)
T ss_dssp --SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHH
T ss_pred --eeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccc
Confidence 369999999999
Q ss_pred -----------------------------------------------------------------------------ceE
Q psy8155 525 -----------------------------------------------------------------------------MAA 527 (617)
Q Consensus 525 -----------------------------------------------------------------------------~~~ 527 (617)
.++
T Consensus 379 ~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a 458 (514)
T d1amua_ 379 QKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCA 458 (514)
T ss_dssp HHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEE
T ss_pred eeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEE
Confidence 222
Q ss_pred EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcC
Q psy8155 528 ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEG 580 (617)
Q Consensus 528 v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g 580 (617)
++.+....+.++++++++++||+|++|..++++++||+|++||++|++|+++.
T Consensus 459 ~v~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~ 511 (514)
T d1amua_ 459 YFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 511 (514)
T ss_dssp EEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred EEEcCCCCCHHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCCCC
Confidence 23334456789999999999999999999999999999999999999999854
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-46 Score=411.02 Aligned_cols=359 Identities=17% Similarity=0.260 Sum_probs=297.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
+.|++++|+++|+++||++|++++++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++|
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~v 103 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV 103 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHCCCCeEEEECCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT 361 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (617)
|++|.++.+++.+++++++++++++++... ..........+.....+....... ...+.+..
T Consensus 104 pl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----- 170 (536)
T d1mdba_ 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE--------FLPLEDLH----- 170 (536)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT--------SEEGGGCC-----
T ss_pred ecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc--------ccchhhcc-----
Confidence 999999999999999999999999976432 222222223333233333222110 11122111
Q ss_pred CCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHH-HHHHhHcC
Q psy8155 362 SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC-IGQALIFG 440 (617)
Q Consensus 362 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~-~~~~L~~G 440 (617)
..+...+...++|+++|+|||||||.||||++||+++...+.+....+++.++|++++..|++|..++... ++..+..|
T Consensus 171 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g 250 (536)
T d1mdba_ 171 TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250 (536)
T ss_dssp CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred cCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccc
Confidence 11122235678999999999999999999999999999999999999999999999999999998885433 33445557
Q ss_pred cEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 441 ~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
.+++..+.+++..++..+++++++.+..+|..+..+..........+++++.+. |+++++...+++.+.++. ..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~-~~~~~ 329 (536)
T d1mdba_ 251 GRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQV 329 (536)
T ss_dssp CEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEEE
T ss_pred ccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCc-eeeec
Confidence 888888889999999999999999999999999988877666666778888776 778999999999999987 57778
Q ss_pred cccccc--------------------------------------------------------------------------
Q psy8155 519 YGATEG-------------------------------------------------------------------------- 524 (617)
Q Consensus 519 YG~TE~-------------------------------------------------------------------------- 524 (617)
||.+|.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~ 409 (536)
T d1mdba_ 330 FGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFY 409 (536)
T ss_dssp EECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCE
T ss_pred cccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCcc
Confidence 888876
Q ss_pred ---------------------------------------------------------------ceEEeCCCCCCCHHHHH
Q psy8155 525 ---------------------------------------------------------------MAAILDINKSLDVSAVS 541 (617)
Q Consensus 525 ---------------------------------------------------------------~~~v~~~~~~~~~~~l~ 541 (617)
+++++..+...+.++++
T Consensus 410 ~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~~l~ 489 (536)
T d1mdba_ 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELK 489 (536)
T ss_dssp EEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHH
T ss_pred ccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHHHHH
Confidence 33444455567788999
Q ss_pred HHHhhc-CCCCCcCcEEEEeecccCCccchhhhHHHhhc
Q psy8155 542 EGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 542 ~~l~~~-Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~ 579 (617)
+++.++ ||.|++|..+++++++|+|++||+||++|++.
T Consensus 490 ~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 528 (536)
T d1mdba_ 490 AFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA 528 (536)
T ss_dssp HHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHH
T ss_pred HHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHH
Confidence 999875 99999999999999999999999999999753
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=5.6e-45 Score=393.46 Aligned_cols=355 Identities=22% Similarity=0.270 Sum_probs=294.6
Q ss_pred CCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.|++++|+++|+++||++|+++. ++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence 58999999999999999999985 5699999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+|++|.++.+++.+++++++++++|++...... ...... ....+++.+++.... ........+.
T Consensus 82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~--------------~~~~~~~~~~ 145 (503)
T d3cw9a1 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA-DAIFQS-GSGARIIFLGDLVRD--------------GEPYSYGPPI 145 (503)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHH-HHHHHT-TCCCEEEEHHHHEET--------------TEECCCSCCC
T ss_pred EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHH-HHHhhh-ccccccccchhhhhh--------------hcccccCCcc
Confidence 999999999999999999999999998764322 222222 234555544321100 0001111122
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCC--CCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF--RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.....+++++++|+|||||||.||+|+++|+++...+......+.. ...++++..+|++|..+.....+.+...++++
T Consensus 146 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 225 (503)
T d3cw9a1 146 EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (503)
T ss_dssp CCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEE
T ss_pred ccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccccccc
Confidence 2234578999999999999999999999999999998887776554 45689999999988887766777888999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 444 vi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
++.+.+++..+...+..++++++..+|+.+..++.... ......++||.++ |++++++....+.+.++. .+.+.|
T Consensus 226 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~y 304 (503)
T d3cw9a1 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIY 304 (503)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCS-EEEEEE
T ss_pred ccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccc-cccccc
Confidence 99999999999999999999999999999887665322 2334567899887 888999999999999887 699999
Q ss_pred ccccc---------------------------------------------------------------------------
Q psy8155 520 GATEG--------------------------------------------------------------------------- 524 (617)
Q Consensus 520 G~TE~--------------------------------------------------------------------------- 524 (617)
|.||+
T Consensus 305 g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~Tg 384 (503)
T d3cw9a1 305 GTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384 (503)
T ss_dssp EETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred cccccceeeeeccccccccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecc
Confidence 99999
Q ss_pred ------------------------------------------------------------ceEEe-CCCCCCCHHHHHHH
Q psy8155 525 ------------------------------------------------------------MAAIL-DINKSLDVSAVSEG 543 (617)
Q Consensus 525 ------------------------------------------------------------~~~v~-~~~~~~~~~~l~~~ 543 (617)
+++|+ ..+...+.++++++
T Consensus 385 D~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~ 464 (503)
T d3cw9a1 385 DVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTF 464 (503)
T ss_dssp EEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred cccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHH
Confidence 23333 45667788999999
Q ss_pred Hh-hcCCCCCcCcEEEEeecccCCccchhhhHHHhhc
Q psy8155 544 IK-KALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 544 l~-~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~ 579 (617)
+. ++||.|++|..+++++++|+|++||++|++|+++
T Consensus 465 ~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~ 501 (503)
T d3cw9a1 465 CRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501 (503)
T ss_dssp HHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred HHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHh
Confidence 94 6899999999999999999999999999999875
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=99.49 E-value=1.6e-16 Score=153.53 Aligned_cols=154 Identities=7% Similarity=-0.065 Sum_probs=118.1
Q ss_pred EEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-------ccCCCC
Q psy8155 30 IRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-------LSDPPK 102 (617)
Q Consensus 30 ~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-------~~~~~r 102 (617)
.+.|+++|+|++||.+.+. +++||+|+|++|+|++++++.||.|+++++++...++++||++|| ...+..
T Consensus 76 ~~~~~vig~~~~~R~~~~~---~~~~G~~~n~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~i~~~~~~~~~~ 152 (250)
T d1l5aa2 76 EPDAPWLWLPFMNRWGSVA---ANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQ 152 (250)
T ss_dssp STTCCEEEEEECCCTTSGG---GGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTC
T ss_pred ccceeeccceecCCCChhh---hhCeEeEEeeeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhcCCCCC
Confidence 4468999999999998777 999999999999999999999999999999999999999999999 334444
Q ss_pred ccccCcCCccccC----CCCccccccCCCCCcccccccccccc--c----chhhhhhhhhccchhhhcccEEEEeccccc
Q psy8155 103 NTTYNKKGLCSRC----EPGVFIGKIVPSNPARAYLGYVNEKD--S----AKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172 (617)
Q Consensus 103 ~~~~~~l~~~~~~----~~gl~~~~~~~~~~~~~dl~~~~~~~--~----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 172 (617)
+..|+++|..... .++..............||.+.+... + ..+|+..+|+.+++..+..+|..++ ..++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~l~v~~~~~~~l~l~~~y~~~~~~~~~i~~l~~~~~~ll-~~l~ 231 (250)
T d1l5aa2 153 SYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFF-EQLL 231 (250)
T ss_dssp CBCCCSEEEEECCCCCCCTTCEEEEEEEEECCCCSEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHH-HHHH
T ss_pred CCccceEEEeeccCccCCCCCceEEEeeeccceeeEEEEEEEcCCceEEEEEEEehhhCCHHHHHHHHHHHHHHH-HHHH
Confidence 5556666654221 13333222222233345676666433 2 3489999999999999999999888 7788
Q ss_pred eeecccCCCcccccH
Q psy8155 173 YFKDRTGDTFPALKS 187 (617)
Q Consensus 173 ~~~~~~~~~~~~l~~ 187 (617)
.+|++++.++..+.+
T Consensus 232 ~~p~~~~~~l~~l~~ 246 (250)
T d1l5aa2 232 ARFQQVEQDVARLLA 246 (250)
T ss_dssp HHHHTTTTCHHHHHH
T ss_pred hCcCcccchhhhcCC
Confidence 899999998766543
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=98.38 E-value=9.9e-07 Score=92.61 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=75.9
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.|+.+|++. + +-.+|.+.+...+..++ ...|++++|++...++-+... +..+++++..|+..+..+
T Consensus 36 ~Pd~~Al~~---~------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~--v~~~la~~~~G~v~v~l~ 104 (514)
T d1amua_ 36 RPNNVAIVC---E------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPID 104 (514)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCCeEEEE---C------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEEEeC
Confidence 678888863 1 23689888877665544 346899999999888876644 566889999999999876
Q ss_pred -CCCHHHHHHHHHHcCCcEEeecHHHHHHHHc
Q psy8155 448 -KFSASNYFSDVCKYKCTVGQYIGEMCRYLLS 478 (617)
Q Consensus 448 -~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~ 478 (617)
...++.+...++..++..+..-+.....+..
T Consensus 105 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 105 IEYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 5788999999999999999988887776554
|
| >d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: Polyketide synthase associated protein 5, PapA5 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.36 E-value=1.3e-08 Score=95.99 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=56.6
Q ss_pred cCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc
Q psy8155 34 PVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 96 (617)
Q Consensus 34 ~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf 96 (617)
+.+++|+.+|...+.+..+++||+|+|++|+|++++++.+|.++++++++...++++||++|+
T Consensus 80 ~~~~~~~~~r~~~~~~~~~~~~G~~~~~~~~r~~~~~~~~~~~l~~~v~~~l~~~~~h~~~~~ 142 (238)
T d1q9ja2 80 IPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQ 142 (238)
T ss_dssp EEEEEEEETTTTSSSCCCTTTBSCCEEEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccccccccccccccCccccceeEeeeeeEEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccH
Confidence 556777888876655556789999999999999999999999999999999999999999998
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=98.31 E-value=2.6e-07 Score=96.52 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=67.4
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHH---HHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI---AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.|+.+|++.-.+| .-+|.+.+...+..+ -...|++++|++...++-+... +..+|+++..|+..+..+
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~vpi~ 85 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALLN 85 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEEC
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH--HHHHHHHHHhCcEEEEeC
Confidence 5677776554433 357888776554443 3456889999999888865543 567889999999999876
Q ss_pred -CCCHHHHHHHHHHcCCcEEeecH
Q psy8155 448 -KFSASNYFSDVCKYKCTVGQYIG 470 (617)
Q Consensus 448 -~~d~~~l~~~i~~~~vt~~~~~P 470 (617)
...++.+...+++.++..+....
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~~ 109 (503)
T d3cw9a1 86 PRLKSAELAELIKRGEMTAAVIAV 109 (503)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEESS
T ss_pred CCCCHHHHHHHHHhcCCcEEEeec
Confidence 57899999999999999877543
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=98.00 E-value=2.8e-05 Score=81.51 Aligned_cols=88 Identities=15% Similarity=0.000 Sum_probs=66.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHH---HHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI---AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.|+.+|.+ + |. -.+|.+.+...+..+ -...|++++|++....+-+... +..+++++..|+..+..+
T Consensus 38 ~pd~~Al~-~--~~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~--~v~~lA~~~~G~i~vpl~ 106 (536)
T d1mdba_ 38 YGDRIAIT-C--GN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF--FEVIFALFRLGALPVFAL 106 (536)
T ss_dssp HTTSEEEE-E--TT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHH--HHHHHHHHHHTCEEEECC
T ss_pred CCCCeEEE-E--CC------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH--HHHHHHHHHhCcEEEecC
Confidence 45667755 3 21 258988886655544 3456899999999998876544 567889999999999886
Q ss_pred -CCCHHHHHHHHHHcCCcEEeec
Q psy8155 448 -KFSASNYFSDVCKYKCTVGQYI 469 (617)
Q Consensus 448 -~~d~~~l~~~i~~~~vt~~~~~ 469 (617)
...++.+...++..++..+...
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~ 129 (536)
T d1mdba_ 107 PSHRSSEITYFCEFAEAAAYIIP 129 (536)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCHHHHHHHHHhhccceEecc
Confidence 4788899999999999887653
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=97.58 E-value=2.6e-05 Score=84.01 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDV---SAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|+.+.+..++.....+|.+.=.-.+|. .|. +++|+ .++...+. .+|+++++++||+||+|..++++++||
T Consensus 520 G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP 599 (643)
T d1pg4a_ 520 GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 599 (643)
T ss_dssp TEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCC
Confidence 888999999998888876422222332 122 44555 45555554 379999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|.+||++|++|++.
T Consensus 600 ~T~sGKi~R~~Lr~~ 614 (643)
T d1pg4a_ 600 KTRSGKIMRRILRKI 614 (643)
T ss_dssp BCTTSCBCHHHHHHH
T ss_pred CCCCcCccHHHHHHH
Confidence 999999999999864
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.50 E-value=5e-05 Score=81.67 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=61.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCC----------HHHHHHHHhhcCCCCCcCcEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLD----------VSAVSEGIKKALPSYARPLFI 557 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~----------~~~l~~~l~~~Lp~~~~P~~~ 557 (617)
|+.+.+..++.....+|.+.=.-.+|- .|. +++|+ .++...+ .++++++++++||+||+|..+
T Consensus 510 G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i 589 (640)
T d1ry2a_ 510 GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI 589 (640)
T ss_dssp SCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEE
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEE
Confidence 888999999998888775321222332 133 34444 2222211 246888999999999999999
Q ss_pred EEeecccCCccchhhhHHHhhcCCC-CCccCCeeEEEe
Q psy8155 558 RCLREVEMTGTYKLKKLDLQKEGFD-PNVIQDRLYYLS 594 (617)
Q Consensus 558 ~~~~~lP~t~~GK~dr~~L~~~g~~-~~~TGD~lg~~d 594 (617)
+++++||+|++||++|++|++.--. ....|| +--++
T Consensus 590 ~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~d-~~tl~ 626 (640)
T d1ry2a_ 590 ILVDDLPKTRSGKIMRRILRKILAGESDQLGD-VSTLS 626 (640)
T ss_dssp EECSCCCBCTTSCBCHHHHHHSCC--------------
T ss_pred EEeCCCCCCCCcCccHHHHHHHHhCCccccCC-cchhc
Confidence 9999999999999999999865321 123577 55554
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=97.36 E-value=8.3e-05 Score=77.84 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=59.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----cccc-eEEe-CCCCCCCHHHHHHHHhhcCCCC-CcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEGM-AAIL-DINKSLDVSAVSEGIKKALPSY-ARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~~-~~v~-~~~~~~~~~~l~~~l~~~Lp~~-~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++.....+|.+.=.-.+|- .|.. ++|+ .++...+.+++++++.++|++| |+|..+++++++|+|
T Consensus 443 G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t 522 (541)
T d1lcia_ 443 GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKG 522 (541)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEESSCCC-
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEeCCCCcC
Confidence 888999999998888775311112331 2333 3444 5677788899999999999876 689999999999999
Q ss_pred ccchhhhHHHhh
Q psy8155 567 GTYKLKKLDLQK 578 (617)
Q Consensus 567 ~~GK~dr~~L~~ 578 (617)
++||+||++|++
T Consensus 523 ~~GKi~r~~l~~ 534 (541)
T d1lcia_ 523 LTGKLDARKIRE 534 (541)
T ss_dssp ----CCHHHHHH
T ss_pred CCcCccHHHHHH
Confidence 999999999975
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=97.04 E-value=3.6e-05 Score=80.71 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC-CHHHHHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN-RPEFVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~-s~~~iva~lA~~~aG~~~vpldp 290 (617)
.++.+|++.. +-.+|+..+...+..... ........++++...+|- ........+..+..|+..+.+++
T Consensus 167 ~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~-~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~ 245 (534)
T d1v25a_ 167 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL-VDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 245 (534)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTS-TTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred ccCCcEEEEEecCCCCCccccccccchhhhhhhhhhh-hcccccccccccccccchhhhccccccceeeeecceeeeccc
Confidence 4556666542 245888877643322222 223456778888888874 34455566667778899999999
Q ss_pred CCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 291 ~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.....+...++...++......+.....+..
T Consensus 246 ~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~ 276 (534)
T d1v25a_ 246 RLDPASLVELFDGEGVTFTAGVPTVWLALAD 276 (534)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred cccccccchhhhhccccccccCchhhhhhhh
Confidence 9999999999999999999988776655444
|