Psyllid ID: psy8216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNKNGGKAASGEKMES
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEccccccccccEEEEEccEEEEEEEEcEEcccccEEEEEEEEEEEcccccccccEEEEEcccccEEEEEcccccccccccEEEEEEEEccccccccccccccccccccccc
cccccccccccccccccHHHHHHccccccHHHHccccccccccccccccccccccHHHHHccccccEEEcccccEEEEEEcccccccEEEEEEEccEEEEEEcccccccccccEEHHHEEEEEccccccHHHEEEEEccccEEEEEccccccccccccEEEEEEEcccccccccccccccccccccccc
MSLIPYLlneledlahpniydqhfglgyhphdllqhfptprilsvplrsgyvrpwrhvlenesgvsnfgldkeglkvnldvqqfkpeeidvkvVDDFIVVHakheersdqhgfisreftrryripdsvdAQAIASKLssdgilsiqapkkatkegagersipvvqtnqpavkqgnknggkaasgekmes
MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLenesgvsnfgldkeGLKVNLDVQqfkpeeidvkvVDDFIVVHakheersdqhgfisreftrryrIPDSVDAQAIASklssdgilsiqAPKKAtkegagersipvvqtnqpavkqgnknggkaasgekmes
MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEidvkvvddfivvHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNKNGGKAASGEKMES
***IPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKH******HGFISREFTRRYRI*****************************************************************
MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILS****************************EGLKVNLDVQQFKPEEIDVKVVDDFIVVHA**********FISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA******************************************
MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQA*************IPVVQTNQPAVK*****************
*SLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTN**********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLIPYLLNELEDLAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNKNGGKAASGEKMES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query189 2.2.26 [Sep-21-2011]
P82147187 Protein lethal(2)essentia yes N/A 0.957 0.967 0.394 3e-34
Q05713174 Alpha-crystallin B chain yes N/A 0.783 0.850 0.447 3e-29
Q5R9K0175 Alpha-crystallin B chain yes N/A 0.798 0.862 0.453 4e-29
P02511175 Alpha-crystallin B chain yes N/A 0.798 0.862 0.453 4e-29
P02510175 Alpha-crystallin B chain yes N/A 0.798 0.862 0.453 4e-29
P41316175 Alpha-crystallin B chain yes N/A 0.798 0.862 0.453 5e-29
Q9EPF3175 Alpha-crystallin B chain N/A N/A 0.798 0.862 0.435 6e-29
Q05557174 Alpha-crystallin B chain N/A N/A 0.820 0.890 0.415 6e-29
Q60HG8175 Alpha-crystallin B chain N/A N/A 0.798 0.862 0.447 6e-29
P02505173 Alpha-crystallin A chain N/A N/A 0.809 0.884 0.413 2e-28
>sp|P82147|L2EFL_DROME Protein lethal(2)essential for life OS=Drosophila melanogaster GN=l(2)efl PE=1 SV=1 Back     alignment and function desciption
 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 110/190 (57%), Gaps = 9/190 (4%)

Query: 1   MSLIPYLLNELED-----LAHPNIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPW 55
           MS++P +  +  D     +    + DQHFG G    DL+      R     LRSGY+RPW
Sbjct: 1   MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSR--PTVLRSGYLRPW 58

Query: 56  -RHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFI 114
             + L+ +   S   +D E  +V LDVQQF P EI VKV D F++V  KHEE+ D+HG++
Sbjct: 59  HTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADKFVIVEGKHEEKQDEHGYV 118

Query: 115 SREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQG 174
           SR+F+RRY++P  V+   + S LSSDG+L+I+AP KA      ER + + QT  P+ K+ 
Sbjct: 119 SRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPPPQTERLVQITQTG-PSSKED 177

Query: 175 NKNGGKAASG 184
           N    + ++ 
Sbjct: 178 NAKKVETSTA 187
Vital role in embryonic development.
Drosophila melanogaster (taxid: 7227)
>sp|Q05713|CRYAB_CHICK Alpha-crystallin B chain OS=Gallus gallus GN=CRYAB PE=2 SV=2 Back     alignment and function description
>sp|Q5R9K0|CRYAB_PONAB Alpha-crystallin B chain OS=Pongo abelii GN=CRYAB PE=2 SV=1 Back     alignment and function description
>sp|P02511|CRYAB_HUMAN Alpha-crystallin B chain OS=Homo sapiens GN=CRYAB PE=1 SV=2 Back     alignment and function description
>sp|P02510|CRYAB_BOVIN Alpha-crystallin B chain OS=Bos taurus GN=CRYAB PE=1 SV=2 Back     alignment and function description
>sp|P41316|CRYAB_RABIT Alpha-crystallin B chain OS=Oryctolagus cuniculus GN=CRYAB PE=1 SV=1 Back     alignment and function description
>sp|Q9EPF3|CRYAB_SPAJD Alpha-crystallin B chain OS=Spalax judaei GN=CRYAB PE=2 SV=1 Back     alignment and function description
>sp|Q05557|CRYAB_ANAPL Alpha-crystallin B chain OS=Anas platyrhynchos GN=CRYAB PE=2 SV=1 Back     alignment and function description
>sp|Q60HG8|CRYAB_MACFA Alpha-crystallin B chain OS=Macaca fascicularis GN=CRYAB PE=2 SV=1 Back     alignment and function description
>sp|P02505|CRYAA_RHEAM Alpha-crystallin A chain OS=Rhea americana GN=CRYAA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
121543671193 putative small heat shock protein [Macon 0.989 0.968 0.574 2e-53
242005718205 protein lethal, putative [Pediculus huma 0.973 0.897 0.526 2e-49
242005722211 protein lethal, putative [Pediculus huma 0.973 0.872 0.526 8e-49
85816370182 heat shock protein 20.7 [Locusta migrato 0.931 0.967 0.556 4e-47
90820038182 putative small heat shock protein [Graph 0.899 0.934 0.562 1e-46
359843250182 heat shock protein 20.7 [Schistocerca gr 0.952 0.989 0.534 1e-46
198250388195 heat shock protein 20 [Bemisia tabaci] g 0.973 0.943 0.520 2e-43
198250396195 heat shock protein 20 [Trialeurodes vapo 0.973 0.943 0.510 2e-42
206597767201 small heat shock protein [Trialeurodes v 0.825 0.776 0.508 3e-40
332018201211 Protein lethal(2)essential for life [Acr 0.994 0.890 0.447 1e-38
>gi|121543671|gb|ABM55532.1| putative small heat shock protein [Maconellicoccus hirsutus] Back     alignment and taxonomy information
 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 141/195 (72%), Gaps = 8/195 (4%)

Query: 1   MSLIPYLLNELEDLAHPN------IYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRP 54
           MSL+PY++NEL   ++        +YDQHFGLG    DL +  P     S P+ +GY+RP
Sbjct: 1   MSLLPYIVNELVRDSYDRYDPFSPLYDQHFGLGLLNDDLYRR-PAISAFSTPVLAGYLRP 59

Query: 55  WRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFI 114
            RH     SG+S     K+  KVNLDVQQFKPEE++VK+VDD++VV  KHEER D+HG+I
Sbjct: 60  HRHSHPENSGISTIVNQKDQFKVNLDVQQFKPEEVNVKIVDDYLVVEGKHEERQDKHGYI 119

Query: 115 SREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQG 174
           SR+FTRRY++P +V+ +AIAS LSSDGILSI APKKA K  A E SIPVVQTNQPA+KQ 
Sbjct: 120 SRQFTRRYKLPQNVNLEAIASNLSSDGILSITAPKKAEKNEAKEISIPVVQTNQPAIKQT 179

Query: 175 NKNGGKAASGEKMES 189
           NKN  K+A G+KME+
Sbjct: 180 NKNEEKSA-GDKMET 193

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242005718|ref|XP_002423709.1| protein lethal, putative [Pediculus humanus corporis] gi|212506894|gb|EEB10971.1| protein lethal, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|242005722|ref|XP_002423711.1| protein lethal, putative [Pediculus humanus corporis] gi|212506896|gb|EEB10973.1| protein lethal, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|85816370|gb|ABC84494.1| heat shock protein 20.7 [Locusta migratoria] Back     alignment and taxonomy information
>gi|90820038|gb|ABD98776.1| putative small heat shock protein [Graphocephala atropunctata] Back     alignment and taxonomy information
>gi|359843250|gb|AEV89760.1| heat shock protein 20.7 [Schistocerca gregaria] Back     alignment and taxonomy information
>gi|198250388|gb|ACH85196.1| heat shock protein 20 [Bemisia tabaci] gi|295393288|gb|ADG03464.1| heat shock protein 20 [Bemisia tabaci] gi|295393294|gb|ADG03467.1| heat shock protein 20 [Bemisia tabaci] gi|308097851|gb|ADO14472.1| hsp20 [Bemisia tabaci] Back     alignment and taxonomy information
>gi|198250396|gb|ACH85200.1| heat shock protein 20 [Trialeurodes vaporariorum] Back     alignment and taxonomy information
>gi|206597767|gb|ACI15853.1| small heat shock protein [Trialeurodes vaporariorum] Back     alignment and taxonomy information
>gi|332018201|gb|EGI58806.1| Protein lethal(2)essential for life [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query189
FB|FBgn0011296187 l(2)efl "lethal (2) essential 0.910 0.919 0.381 1.5e-28
UNIPROTKB|E2RNB6175 CRYAB "Uncharacterized protein 0.788 0.851 0.434 2.2e-25
UNIPROTKB|Q05713174 CRYAB "Alpha-crystallin B chai 0.783 0.850 0.422 3.6e-25
UNIPROTKB|P02510175 CRYAB "Alpha-crystallin B chai 0.788 0.851 0.428 7.6e-25
UNIPROTKB|E9PR44174 CRYAB "Alpha-crystallin B chai 0.788 0.856 0.434 7.6e-25
UNIPROTKB|P02511175 CRYAB "Alpha-crystallin B chai 0.788 0.851 0.434 7.6e-25
UNIPROTKB|Q05557174 CRYAB "Alpha-crystallin B chai 0.783 0.850 0.409 7.6e-25
UNIPROTKB|Q5R9K0175 CRYAB "Alpha-crystallin B chai 0.788 0.851 0.434 7.6e-25
UNIPROTKB|P41316175 CRYAB "Alpha-crystallin B chai 0.788 0.851 0.434 9.7e-25
UNIPROTKB|Q60HG8175 CRYAB "Alpha-crystallin B chai 0.788 0.851 0.428 9.7e-25
FB|FBgn0011296 l(2)efl "lethal (2) essential for life" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 69/181 (38%), Positives = 100/181 (55%)

Query:     1 MSLIPYLLNEL-EDLAHP----NIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPW 55
             MS++P +  +  ++L  P     + DQHFG G    DL+      R     LRSGY+RPW
Sbjct:     1 MSVVPLMFRDWWDELDFPMRTSRLLDQHFGQGLKRDDLMSSVWNSR--PTVLRSGYLRPW 58

Query:    56 R-HVLENESGVSNFGLDKEGLKVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFI 114
               + L+ +   S   +D E  +V LDVQQF P E              KHEE+ D+HG++
Sbjct:    59 HTNSLQKQESGSTLNIDSEKFEVILDVQQFSPSEITVKVADKFVIVEGKHEEKQDEHGYV 118

Query:   115 SREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQG 174
             SR+F+RRY++P  V+   + S LSSDG+L+I+AP KA      ER + + QT  P+ K+ 
Sbjct:   119 SRQFSRRYQLPSDVNPDTVTSSLSSDGLLTIKAPMKALPPPQTERLVQITQTG-PSSKED 177

Query:   175 N 175
             N
Sbjct:   178 N 178
GO:0009408 "response to heat" evidence=NAS
GO:0009790 "embryo development" evidence=NAS
GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP
GO:0010506 "regulation of autophagy" evidence=IMP
GO:0006497 "protein lipidation" evidence=IMP
UNIPROTKB|E2RNB6 CRYAB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q05713 CRYAB "Alpha-crystallin B chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P02510 CRYAB "Alpha-crystallin B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PR44 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P02511 CRYAB "Alpha-crystallin B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q05557 CRYAB "Alpha-crystallin B chain" [Anas platyrhynchos (taxid:8839)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R9K0 CRYAB "Alpha-crystallin B chain" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P41316 CRYAB "Alpha-crystallin B chain" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q60HG8 CRYAB "Alpha-crystallin B chain" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R9K0CRYAB_PONABNo assigned EC number0.45390.79890.8628yesN/A
Q05713CRYAB_CHICKNo assigned EC number0.44720.78300.8505yesN/A
Q7M2W6CRYAB_PIGNo assigned EC number0.44170.79890.8628yesN/A
P02510CRYAB_BOVINNo assigned EC number0.45390.79890.8628yesN/A
P02511CRYAB_HUMANNo assigned EC number0.45390.79890.8628yesN/A
P41316CRYAB_RABITNo assigned EC number0.45390.79890.8628yesN/A
P82147L2EFL_DROMENo assigned EC number0.39470.95760.9679yesN/A
P23927CRYAB_MOUSENo assigned EC number0.42940.79890.8628yesN/A
P23928CRYAB_RATNo assigned EC number0.42330.79890.8628yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 8e-40
cd0647883 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain fo 5e-35
cd0649884 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crysta 4e-30
cd0649786 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crysta 2e-29
cd0647586 cd06475, ACD_HspB1_like, Alpha crystallin domain ( 3e-28
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 6e-25
cd0647683 cd06476, ACD_HspB2_like, Alpha crystallin domain ( 3e-23
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 2e-20
cd0647783 cd06477, ACD_HspB3_Like, Alpha crystallin domain ( 8e-19
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 1e-16
cd0648091 cd06480, ACD_HspB8_like, Alpha-crystallin domain ( 2e-16
cd0648187 cd06481, ACD_HspB9_like, Alpha crystallin domain ( 1e-10
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 7e-10
cd0647981 cd06479, ACD_HspB7_like, Alpha crystallin domain ( 2e-09
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 4e-06
cd0648287 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) 5e-05
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 0.004
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 0.004
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score =  129 bits (328), Expect = 8e-40
 Identities = 47/79 (59%), Positives = 63/79 (79%)

Query: 71  DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDA 130
           D E  +V LDV+ FKPEE+ VKV D+ +VV  KHEER D+HG++SREFTRRY++P+ VD 
Sbjct: 5   DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDP 64

Query: 131 QAIASKLSSDGILSIQAPK 149
            ++ S LSSDG+L+I+APK
Sbjct: 65  DSVTSSLSSDGVLTIEAPK 83

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 83
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107231 cd06476, ACD_HspB2_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107235 cd06480, ACD_HspB8_like, Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107237 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 189
KOG3591|consensus173 99.96
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.93
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.93
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.93
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.92
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.91
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.91
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.9
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.9
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.9
PRK10743137 heat shock protein IbpA; Provisional 99.9
PRK11597142 heat shock chaperone IbpB; Provisional 99.9
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.89
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.87
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.87
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.86
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.85
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.84
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.83
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.79
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.54
KOG0710|consensus196 99.51
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.23
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 98.91
cd0646384 p23_like Proteins containing this p23_like domain 98.86
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.58
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.11
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 97.82
PF0052559 Crystallin: Alpha crystallin A chain, N terminal; 97.71
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 97.69
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 97.67
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.41
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.25
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.17
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.06
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 96.37
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 96.34
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 95.06
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 94.99
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 94.04
KOG1309|consensus196 90.63
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 90.46
KOG3158|consensus180 80.63
PF13349166 DUF4097: Domain of unknown function (DUF4097) 80.23
>KOG3591|consensus Back     alignment and domain information 
Probab=99.96  E-value=5.5e-29  Score=197.97  Aligned_cols=150  Identities=42%  Similarity=0.660  Sum_probs=119.3

Q ss_pred             CccccccCCCCCcc--cccCCCCCCCcccCCCCCCCcCCccccccccCccceeEEcCCcEEEEEEcCCCCCCceEEEEEC
Q psy8216          18 NIYDQHFGLGYHPH--DLLQHFPTPRILSVPLRSGYVRPWRHVLENESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVD   95 (189)
Q Consensus        18 rl~d~~fg~~~~~~--d~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~   95 (189)
                      ++++++|+......  +++..+...     .....+.++............++..++++|.|.+||.+|+||+|+|++.|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~   94 (173)
T KOG3591|consen   20 RLLDPFFGEGRRLSESRLLALPRDS-----DQMPYWRRPLSRARPLSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD   94 (173)
T ss_pred             cccCcccccccccchhhhhcccccc-----ccchhhcCccccccCCcccccccccCCCcEEEEEEcccCcccceEEEeCC
Confidence            78888888876542  333222111     11122222222100023467899999999999999999999999999999


Q ss_pred             CEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCcCCCCCeEEeEeecCCccccc
Q psy8216          96 DFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQ  173 (189)
Q Consensus        96 ~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~~~~~~~r~I~I~~~~~p~~~~  173 (189)
                      +.|.|+|+|+++++++|+++|+|.|+|.||++||+++|+|+||.||+|+|++|+....+. .+|.|+|++.++.+.+.
T Consensus        95 ~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~-~er~ipI~~~~~~~~~~  171 (173)
T KOG3591|consen   95 NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQD-NERSIPIEQVGPSALSQ  171 (173)
T ss_pred             CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCc-cceEEeEeecCcccccc
Confidence            999999999999999999999999999999999999999999999999999999987642 69999999999888543

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>KOG0710|consensus Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>KOG1309|consensus Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>KOG3158|consensus Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
2klr_A175 Solid-State Nmr Structure Of The Alpha-Crystallin D 1e-25
3l1g_A96 Human Alphab Crystallin Length = 96 3e-20
3n3e_A106 Zebrafish Alphaa Crystallin Length = 106 2e-19
2wj7_A94 Human Alphab Crystallin Length = 94 2e-19
3l1e_A106 Bovine Alphaa Crystallin Zinc Bound Length = 106 2e-18
2y22_A94 Human Alphab-Crystallin Domain (Residues 67-157) Le 2e-18
2y1z_A94 Human Alphab Crystallin Acd R120g Length = 94 3e-18
2y1y_A90 Human Alphab Crystallin Acd(Residues 71-157) Length 1e-17
3l1f_A103 Bovine Alphaa Crystallin Length = 103 2e-17
2wj5_A101 Rat Alpha Crystallin Domain Length = 101 1e-16
3q9p_A85 Hspb1 Fragment Length = 85 4e-12
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain In Alphab- Crystallin Oligomers Length = 175 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 19  IYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRP---WRHVLENESGVSNFGLDKEGL 75
           ++DQ FG      DL   FPT    S  L   Y+RP    R     ++G+S   L+K+  
Sbjct: 23  LFDQFFGEHLLESDL---FPT----STSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRF 75
Query: 76  KVNLDVQQFKPEEXXXXXXXXXXXXHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIAS 135
            VNLDV+ F PEE            H KHEER D+HGFISREF R+YRIP  VD   I S
Sbjct: 76  SVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITS 135
Query: 136 KLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNKN 177
            LSSDG+L++  P+K       ER+IP+ +  +PAV    K 
Sbjct: 136 SLSSDGVLTVNGPRKQV--SGPERTIPITREEKPAVTAAPKK 175
>pdb|3L1G|A Chain A, Human Alphab Crystallin Length = 96 Back     alignment and structure
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin Length = 106 Back     alignment and structure
>pdb|2WJ7|A Chain A, Human Alphab Crystallin Length = 94 Back     alignment and structure
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound Length = 106 Back     alignment and structure
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157) Length = 94 Back     alignment and structure
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g Length = 94 Back     alignment and structure
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157) Length = 90 Back     alignment and structure
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin Length = 103 Back     alignment and structure
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain Length = 101 Back     alignment and structure
>pdb|3Q9P|A Chain A, Hspb1 Fragment Length = 85 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query189
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 4e-51
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 6e-38
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 6e-36
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 8e-35
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 1e-34
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 7e-28
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 8e-21
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 5e-11
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 3e-10
1gme_A151 Heat shock protein 16.9B; small heat shock protein 4e-10
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 1e-07
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
 Score =  161 bits (409), Expect = 4e-51
 Identities = 72/176 (40%), Positives = 96/176 (54%), Gaps = 13/176 (7%)

Query: 5   PYLLNELEDLAHPN-IYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPW---RHVLE 60
           P++         P+ ++DQ FG      DL             L   Y+RP    R    
Sbjct: 8   PWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTST-------SLSPFYLRPPSFLRAPSW 60

Query: 61  NESGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTR 120
            ++G+S   L+K+   VNLDV+ F PEE+ VKV+ D I VH KHEER D+HGFISREF R
Sbjct: 61  FDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120

Query: 121 RYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPVVQTNQPAVKQGNK 176
           +YRIP  VD   I S LSSDG+L++  P+K       ER+IP+ +  +PAV    K
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRKQVS--GPERTIPITREEKPAVTAAPK 174
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 100.0
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.95
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.94
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.93
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.92
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.91
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.9
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.89
4fei_A102 Heat shock protein-related protein; stress respons 99.88
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.88
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.86
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.76
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 98.75
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 98.72
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 97.76
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 97.71
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 97.2
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.13
3igf_A374 ALL4481 protein; two-domained protein consisting o 97.07
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.06
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 96.89
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 96.89
2o30_A131 Nuclear movement protein; MCSG, structural genomic 96.83
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 96.69
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 96.55
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 96.07
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 96.07
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
Probab=100.00  E-value=2.1e-34  Score=228.71  Aligned_cols=157  Identities=43%  Similarity=0.731  Sum_probs=79.3

Q ss_pred             cccCCCCCCCCCC-CccccccCCCCCcccccCCCCCCCcccCCCCCCCcCCccc---ccc-ccCccceeEEcCCcEEEEE
Q psy8216           5 PYLLNELEDLAHP-NIYDQHFGLGYHPHDLLQHFPTPRILSVPLRSGYVRPWRH---VLE-NESGVSNFGLDKEGLKVNL   79 (189)
Q Consensus         5 P~~~r~~~~~~~p-rl~d~~fg~~~~~~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~-~~~~~~~v~~~~~~~~v~~   79 (189)
                      |.++|.|.++..| ||||++||.+++++|++..+..        ...+++++..   ... .....++|++++++|+|.+
T Consensus         8 ~~~~~~~~~~~~~~rl~d~~fg~~~~~~~l~~~~~~--------~~~~~~~~~~~~r~~~~~~~~~~dv~e~~d~~~v~~   79 (175)
T 2klr_A            8 PWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTS--------LSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNL   79 (175)
T ss_dssp             ---------------------------------------------------------------------CCCCSEEEEEE
T ss_pred             CcccCccccccCCcchhhhhcCCCCChhhhcccccc--------cCccccCchhhccccccccCCceEEEEcCCeEEEEE
Confidence            4455556666667 9999999999999888754321        2223333211   001 2345689999999999999


Q ss_pred             EcCCCCCCceEEEEECCEEEEEEEEeeeeCCCceEEEEEEEEEECCCCcccCCcEEEcCCCCEEEEEEeCcCCcCCCCCe
Q psy8216          80 DVQQFKPEEIDVKVVDDFIVVHAKHEERSDQHGFISREFTRRYRIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGER  159 (189)
Q Consensus        80 dlpG~~~edI~V~v~~~~L~I~g~~e~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~ls~dGvL~I~~Pk~~~~~~~~~r  159 (189)
                      |||||++|||+|+++++.|+|+|++++++++++|++++|+|+|.||.+||.++|+|+|++||||+|++||.+..  ...|
T Consensus        80 dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I~lPK~~~~--~~~r  157 (175)
T 2klr_A           80 DVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVS--GPER  157 (175)
T ss_dssp             CCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEEEEECC---------
T ss_pred             ECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEEEEECCCCC--CCCe
Confidence            99999999999999999999999998877788999999999999999999999999996699999999998654  2469


Q ss_pred             EEeEeecCCccc
Q psy8216         160 SIPVVQTNQPAV  171 (189)
Q Consensus       160 ~I~I~~~~~p~~  171 (189)
                      +|+|+.+++|++
T Consensus       158 ~I~I~~~~~~~~  169 (175)
T 2klr_A          158 TIPITREEKPAV  169 (175)
T ss_dssp             ------------
T ss_pred             EEEEecCCcccc
Confidence            999999998885
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 189
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 2e-09
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 3e-08
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 71  DKEGLKVNLDVQQFKPEEIDVKVVDDFIVVHAKH--------EERSDQHGFISREFTRRY 122
             + +KV   +     E+I +  V D + + AK         E           E  R  
Sbjct: 18  GDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTI 77

Query: 123 RIPDSVDAQAIASKLSSDGILSIQAPKKATKEGAGERSIPV 163
           ++P +V  +  ++K   +G+LS+  PK    E + ++ I +
Sbjct: 78  KLPATVKEENASAKFE-NGVLSVILPK---AESSIKKGINI 114
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query189
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.88
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.87
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 97.93
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 96.94
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 96.41
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 95.32
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 95.16
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 83.95
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.88  E-value=3.8e-23  Score=157.93  Aligned_cols=99  Identities=21%  Similarity=0.445  Sum_probs=81.7

Q ss_pred             CccceeEEcCCcEEEEEEcCCCCCCceEEEEEC-CEEEEEEEEeeeeC--CCceEE-----EEEEEEEECCCCcccCCcE
Q psy8216          63 SGVSNFGLDKEGLKVNLDVQQFKPEEIDVKVVD-DFIVVHAKHEERSD--QHGFIS-----REFTRRYRIPDSVDAQAIA  134 (189)
Q Consensus        63 ~~~~~v~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~e~~~~--~~~~~~-----~~F~R~~~LP~~vd~~~i~  134 (189)
                      .+.++|.+++++|+|.++|||++++||+|++++ +.|+|+|++.....  +.++..     +.|+|+|.||.+||.++|+
T Consensus        42 ~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~  121 (150)
T d1gmea_          42 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVK  121 (150)
T ss_dssp             GGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCE
T ss_pred             CCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeE
Confidence            478999999999999999999999999999985 67899997654332  233433     3799999999999999999


Q ss_pred             EEcCCCCEEEEEEeCcCCcCCCCCeEEeE
Q psy8216         135 SKLSSDGILSIQAPKKATKEGAGERSIPV  163 (189)
Q Consensus       135 A~ls~dGvL~I~~Pk~~~~~~~~~r~I~I  163 (189)
                      |+| +||||+|++||.+.++ .+.+.|+|
T Consensus       122 A~~-~nGvL~I~lpK~~~~~-~~~~~I~I  148 (150)
T d1gmea_         122 AGL-ENGVLTVTVPKAEVKK-PEVKAIQI  148 (150)
T ss_dssp             EEE-ETTEEEEEEECCCCCT-TCCCCCCC
T ss_pred             EEE-ECCEEEEEEEcCCcCC-CCceEEec
Confidence            999 8999999999987653 33444544
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure