Psyllid ID: psy8274
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | 2.2.26 [Sep-21-2011] | |||||||
| Q6RUV5 | 192 | Ras-related C3 botulinum | yes | N/A | 0.789 | 0.937 | 0.719 | 3e-88 | |
| P63001 | 192 | Ras-related C3 botulinum | yes | N/A | 0.789 | 0.937 | 0.719 | 3e-88 | |
| P63000 | 192 | Ras-related C3 botulinum | no | N/A | 0.789 | 0.937 | 0.719 | 3e-88 | |
| P62999 | 192 | Ras-related C3 botulinum | yes | N/A | 0.789 | 0.937 | 0.719 | 3e-88 | |
| P62998 | 192 | Ras-related C3 botulinum | yes | N/A | 0.789 | 0.937 | 0.719 | 3e-88 | |
| P40792 | 192 | Ras-related protein Rac1 | yes | N/A | 0.789 | 0.937 | 0.723 | 8e-88 | |
| P48554 | 192 | Ras-related protein Rac2 | no | N/A | 0.789 | 0.937 | 0.714 | 3e-87 | |
| Q9TU25 | 192 | Ras-related C3 botulinum | no | N/A | 0.789 | 0.937 | 0.706 | 1e-86 | |
| P15153 | 192 | Ras-related C3 botulinum | no | N/A | 0.789 | 0.937 | 0.706 | 2e-86 | |
| O88931 | 192 | Ras-related C3 botulinum | no | N/A | 0.789 | 0.937 | 0.701 | 5e-86 |
| >sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 174/228 (76%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly (By similarity). Stimulates PKN2 kinase activity (By similarity). In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Rattus norvegicus (taxid: 10116) |
| >sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 174/228 (76%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Mus musculus (taxid: 10090) |
| >sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 174/228 (76%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
Isoform B has an accelerated GEF-independent GDP/GTP exchange and an impaired GTP hydrolysis, which is restored partially by GTPase-activating proteins. It is able to bind to the GTPase-binding domain of PAK but not full-length PAK in a GTP-dependent manner, suggesting that the insertion does not completely abolish effector interaction. Homo sapiens (taxid: 9606) |
| >sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 174/228 (76%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity in macrophages. Essential for the SPATA13-mediated regulation of cell migration and adhesion assembly and disassembly. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Canis familiaris (taxid: 9615) |
| >sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 174/228 (76%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 85 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 145 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization and growth-factor induced formation of membrane ruffles. Stimulates PKN2 kinase activity. In concert with RAB7A, plays a role in regulating the formation of RBs (ruffled borders) in osteoclasts. Bos taurus (taxid: 9913) |
| >sp|P40792|RAC1_DROME Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 323 bits (827), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 165/228 (72%), Positives = 171/228 (75%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPINLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK TIEKL++KKLAPITYPQGL+
Sbjct: 85 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQKGLKTVFDEAIR+VLCPV K++C LL
Sbjct: 145 MAKEIGAVKYLECSALTQKGLKTVFDEAIRSVLCPVLQPKSKRKCALL 192
|
Involved in axon outgrowth and myoblast fusion. Plays a role in regulating dorsal closure during embryogenesis. Drosophila melanogaster (taxid: 7227) |
| >sp|P48554|RAC2_DROME Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (821), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/228 (71%), Positives = 170/228 (74%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KPINLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASFENVRAKW+PEVRHHCPS PIILVGTKLDLRDDK+TIEKLK+KKL PITYPQGL+
Sbjct: 85 VNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEI AVKYLECSALTQKGLKTVFDEAIR+VLCPV PK+ +C LL
Sbjct: 145 MAKEIAAVKYLECSALTQKGLKTVFDEAIRSVLCPVVRGPKRHKCALL 192
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 173/228 (75%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PAS+ENVRAKW+PEVRHHCPSTPIILVGTKLDLRDDK+TIEKLKEKKLAPITYPQGL+
Sbjct: 85 VSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVLCP PT P+K+ C +L
Sbjct: 145 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRPCSIL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Bos taurus (taxid: 9913) |
| >sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (815), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 172/228 (75%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PAS+ENVRAKW+PEVRHHCPSTPIILVGTKLDLRDDK+TIEKLKEKKLAPITYPQGL+
Sbjct: 85 VSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVLCP PT +K+ C LL
Sbjct: 145 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRQQKRACSLL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Homo sapiens (taxid: 9606) |
| >sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/228 (70%), Positives = 171/228 (75%), Gaps = 48/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD KP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 73 PQT------------------------------------------------DVFLICFSL 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PAS+ENV A WYP+VRHHCPSTPIIL+GTKLDLRDDKETIEKLKEKKLAPITYPQGL+
Sbjct: 85 VSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+AKEI +VKYLECSALTQ+GLKTVFDEAIRAVLCP PT P+K+ C LL
Sbjct: 145 LAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTRPQKRACSLL 192
|
Plasma membrane-associated small GTPase which cycles between an active GTP-bound and inactive GDP-bound state. In active state binds to a variety of effector proteins to regulate cellular responses, such as secretory processes, phagocytose of apoptotic cells and epithelial cell polarization. Augments the production of reactive oxygen species (ROS) by NADPH oxidase. Cavia porcellus (taxid: 10141) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| 172054575 | 798 | EGFP-Pak1-Rac1-dsRed1-CAAX fusion protei | 0.868 | 0.248 | 0.742 | 2e-90 | |
| 334332964 | 343 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.577 | 0.746 | 2e-90 | |
| 297287889 | 369 | PREDICTED: 40S ribosomal protein S0-like | 0.868 | 0.536 | 0.742 | 2e-90 | |
| 167966513 | 775 | dsRed1/Pak1/Rac1/ECFP fusion protein [sy | 0.868 | 0.255 | 0.742 | 3e-90 | |
| 224070509 | 271 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.730 | 0.751 | 4e-90 | |
| 327285926 | 211 | PREDICTED: ras-related C3 botulinum toxi | 0.872 | 0.943 | 0.745 | 4e-90 | |
| 395514654 | 267 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.741 | 0.746 | 6e-90 | |
| 397526160 | 314 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.630 | 0.746 | 8e-90 | |
| 194218709 | 203 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.975 | 0.742 | 4e-89 | |
| 348568594 | 211 | PREDICTED: ras-related C3 botulinum toxi | 0.868 | 0.938 | 0.746 | 5e-89 |
| >gi|172054575|gb|ACB71132.1| EGFP-Pak1-Rac1-dsRed1-CAAX fusion protein [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/229 (74%), Positives = 183/229 (79%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 350 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 409
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G K DVF ICFS
Sbjct: 410 PQTVGETYGKDI-----------TSRG-------------------KDKPIADVFLICFS 439
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 440 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 499
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 500 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 548
|
Source: synthetic construct Species: synthetic construct Genus: N/A Family: N/A Order: N/A Class: N/A Phylum: N/A Superkingdom: |
| >gi|334332964|ref|XP_001377426.2| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Monodelphis domestica] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/229 (74%), Positives = 185/229 (80%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 145 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 204
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + +K+I + V DE I DVF ICFS
Sbjct: 205 PQTVGGTYSKDISS---------------KVKDEPI---------------ADVFLICFS 234
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 235 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 294
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 295 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 343
|
Source: Monodelphis domestica Species: Monodelphis domestica Genus: Monodelphis Family: Didelphidae Order: Didelphimorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|297287889|ref|XP_001109586.2| PREDICTED: 40S ribosomal protein S0-like [Macaca mulatta] | Back alignment and taxonomy information |
|---|
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/229 (74%), Positives = 183/229 (79%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 171 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 230
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G K DVF ICFS
Sbjct: 231 PQTVGETYGKDI-----------TSRG-------------------KDKPIADVFLICFS 260
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 261 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 320
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 321 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 369
|
Source: Macaca mulatta Species: Macaca mulatta Genus: Macaca Family: Cercopithecidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|167966513|gb|ACA13260.1| dsRed1/Pak1/Rac1/ECFP fusion protein [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/229 (74%), Positives = 183/229 (79%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 332 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 391
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G K DVF ICFS
Sbjct: 392 PQTVGETYGKDI-----------TSRG-------------------KDKPIADVFLICFS 421
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 422 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 481
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 482 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 530
|
Source: synthetic construct Species: synthetic construct Genus: N/A Family: N/A Order: N/A Class: N/A Phylum: N/A Superkingdom: |
| >gi|224070509|ref|XP_002192323.1| PREDICTED: ras-related C3 botulinum toxin substrate 1 [Taeniopygia guttata] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/229 (75%), Positives = 185/229 (80%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 73 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 132
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K I S+LT D+ I DVF ICFS
Sbjct: 133 PQTVGGTNGKNI-------SSSLT--------DQPI---------------ADVFLICFS 162
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 163 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 222
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 223 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 271
|
Source: Taeniopygia guttata Species: Taeniopygia guttata Genus: Taeniopygia Family: Estrildidae Order: Passeriformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
| >gi|327285926|ref|XP_003227682.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Anolis carolinensis] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/228 (74%), Positives = 184/228 (80%), Gaps = 29/228 (12%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT V+ LT P V +++ CDVF ICFSL
Sbjct: 73 PQT----------VEGTNGKDLT-------------------PRVKRQQLCDVFLICFSL 103
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 104 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 163
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 164 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 211
|
Source: Anolis carolinensis Species: Anolis carolinensis Genus: Anolis Family: Iguanidae Order: Squamata Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|395514654|ref|XP_003761529.1| PREDICTED: ras-related C3 botulinum toxin substrate 1 [Sarcophilus harrisii] | Back alignment and taxonomy information |
|---|
Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 171/229 (74%), Positives = 184/229 (80%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 69 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 128
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I + V DE I DVF ICFS
Sbjct: 129 PQTVGGTYGKDITS---------------RVKDEPI---------------ADVFLICFS 158
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 159 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 218
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 219 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 267
|
Source: Sarcophilus harrisii Species: Sarcophilus harrisii Genus: Sarcophilus Family: Dasyuridae Order: Dasyuromorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|397526160|ref|XP_003833004.1| PREDICTED: ras-related C3 botulinum toxin substrate 1 [Pan paniscus] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/229 (74%), Positives = 185/229 (80%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 116 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 175
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G D+ I DVF ICFS
Sbjct: 176 PQTVGETYGKDI-----------TSRGK----DKPI---------------ADVFLICFS 205
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 206 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 265
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 266 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 314
|
Source: Pan paniscus Species: Pan paniscus Genus: Pan Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|194218709|ref|XP_001493624.2| PREDICTED: ras-related C3 botulinum toxin substrate 1-like [Equus caballus] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/229 (74%), Positives = 183/229 (79%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 5 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 64
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T +G K DVF ICFS
Sbjct: 65 PQTVGETYGKDI-----------TSRG-------------------KDKPMADVFLICFS 94
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 95 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 154
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 155 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 203
|
Source: Equus caballus Species: Equus caballus Genus: Equus Family: Equidae Order: Perissodactyla Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|348568594|ref|XP_003470083.1| PREDICTED: ras-related C3 botulinum toxin substrate 1-like isoform 2 [Cavia porcellus] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 171/229 (74%), Positives = 183/229 (79%), Gaps = 31/229 (13%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 72
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
PQT G + K+I T KG K DVF ICFS
Sbjct: 73 PQTVGDTYGKDI-----------TSKG-------------------KDKPIADVFLICFS 102
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
LV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL
Sbjct: 103 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 162
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 163 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 211
|
Source: Cavia porcellus Species: Cavia porcellus Genus: Cavia Family: Caviidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 228 | ||||||
| UNIPROTKB|F1PYQ1 | 211 | RAC1 "Ras-related C3 botulinum | 0.557 | 0.601 | 0.757 | 6.5e-83 | |
| UNIPROTKB|D4ADX3 | 211 | Rac1 "Ras-related C3 botulinum | 0.530 | 0.573 | 0.785 | 4.5e-82 | |
| UNIPROTKB|F1N8D9 | 180 | RAC1 "Uncharacterized protein" | 0.513 | 0.65 | 0.803 | 5.8e-82 | |
| UNIPROTKB|F1P489 | 192 | RAC1 "Uncharacterized protein" | 0.513 | 0.609 | 0.803 | 5.8e-82 | |
| UNIPROTKB|F1MNG3 | 180 | RAC1 "Ras-related C3 botulinum | 0.513 | 0.65 | 0.803 | 5.8e-82 | |
| UNIPROTKB|P62998 | 192 | RAC1 "Ras-related C3 botulinum | 0.513 | 0.609 | 0.803 | 5.8e-82 | |
| UNIPROTKB|P62999 | 192 | RAC1 "Ras-related C3 botulinum | 0.513 | 0.609 | 0.803 | 5.8e-82 | |
| UNIPROTKB|P63000 | 192 | RAC1 "Ras-related C3 botulinum | 0.513 | 0.609 | 0.803 | 5.8e-82 | |
| MGI|MGI:97845 | 192 | Rac1 "RAS-related C3 botulinum | 0.513 | 0.609 | 0.803 | 5.8e-82 | |
| RGD|619755 | 192 | Rac1 "ras-related C3 botulinum | 0.513 | 0.609 | 0.803 | 5.8e-82 |
| UNIPROTKB|F1PYQ1 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 97/128 (75%), Positives = 108/128 (84%)
Query: 102 VPTVPKKKR-CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160
+P+ K K DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+
Sbjct: 84 IPSRGKDKLIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 143
Query: 161 TIXXXXXXXXAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 220
TI PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 144 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKK 203
Query: 221 KKKRCVLL 228
+K++C+LL
Sbjct: 204 RKRKCLLL 211
|
|
| UNIPROTKB|D4ADX3 Rac1 "Ras-related C3 botulinum toxin substrate 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 95/121 (78%), Positives = 104/121 (85%)
Query: 108 KKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXX 167
K DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 91 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 150
Query: 168 XXXAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVL 227
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+L
Sbjct: 151 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLL 210
Query: 228 L 228
L
Sbjct: 211 L 211
|
|
| UNIPROTKB|F1N8D9 RAC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 64 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 123
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 124 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 180
|
|
| UNIPROTKB|F1P489 RAC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
| UNIPROTKB|F1MNG3 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 64 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 123
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 124 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 180
|
|
| UNIPROTKB|P62998 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
| UNIPROTKB|P62999 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
| UNIPROTKB|P63000 RAC1 "Ras-related C3 botulinum toxin substrate 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
| MGI|MGI:97845 Rac1 "RAS-related C3 botulinum substrate 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
| RGD|619755 Rac1 "ras-related C3 botulinum toxin substrate 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
Identities = 94/117 (80%), Positives = 103/117 (88%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIXXXXXXXXA 171
DVF ICFSLV+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TI
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
PITYPQGL+MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P +K++C+LL
Sbjct: 136 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL 192
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P34144 | RAC1A_DICDI | No assigned EC number | 0.6457 | 0.7631 | 0.8969 | yes | N/A |
| Q6RUV5 | RAC1_RAT | No assigned EC number | 0.7192 | 0.7894 | 0.9375 | yes | N/A |
| Q9TU25 | RAC2_BOVIN | No assigned EC number | 0.7061 | 0.7894 | 0.9375 | no | N/A |
| Q6Z7L8 | RAC7_ORYSJ | No assigned EC number | 0.4821 | 0.7543 | 0.8730 | yes | N/A |
| Q9HF56 | CDC42_ASHGO | No assigned EC number | 0.5175 | 0.7850 | 0.9371 | yes | N/A |
| Q01112 | CDC42_SCHPO | No assigned EC number | 0.5131 | 0.7894 | 0.9375 | yes | N/A |
| P40792 | RAC1_DROME | No assigned EC number | 0.7236 | 0.7894 | 0.9375 | yes | N/A |
| P62998 | RAC1_BOVIN | No assigned EC number | 0.7192 | 0.7894 | 0.9375 | yes | N/A |
| P62999 | RAC1_CANFA | No assigned EC number | 0.7192 | 0.7894 | 0.9375 | yes | N/A |
| P19073 | CDC42_YEAST | No assigned EC number | 0.5219 | 0.7850 | 0.9371 | yes | N/A |
| P60763 | RAC3_HUMAN | No assigned EC number | 0.7149 | 0.7280 | 0.8645 | no | N/A |
| P60764 | RAC3_MOUSE | No assigned EC number | 0.7149 | 0.7280 | 0.8645 | no | N/A |
| Q05144 | RAC2_MOUSE | No assigned EC number | 0.7017 | 0.7894 | 0.9375 | no | N/A |
| P15153 | RAC2_HUMAN | No assigned EC number | 0.7061 | 0.7894 | 0.9375 | no | N/A |
| O88931 | RAC2_CAVPO | No assigned EC number | 0.7017 | 0.7894 | 0.9375 | no | N/A |
| P48554 | RAC2_DROME | No assigned EC number | 0.7149 | 0.7894 | 0.9375 | no | N/A |
| Q03206 | RAC1_CAEEL | No assigned EC number | 0.6359 | 0.7850 | 0.9371 | yes | N/A |
| P63001 | RAC1_MOUSE | No assigned EC number | 0.7192 | 0.7894 | 0.9375 | yes | N/A |
| P63000 | RAC1_HUMAN | No assigned EC number | 0.7192 | 0.7894 | 0.9375 | no | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 228 | |||
| cd01871 | 174 | cd01871, Rac1_like, Ras-related C3 botulinum toxin | 1e-122 | |
| smart00174 | 174 | smart00174, RHO, Rho (Ras homology) subfamily of R | 1e-113 | |
| cd00157 | 171 | cd00157, Rho, Ras homology family (Rho) of small g | 1e-104 | |
| cd01875 | 191 | cd01875, RhoG, Ras homolog family, member G (RhoG) | 1e-89 | |
| cd01874 | 175 | cd01874, Cdc42, cell division cycle 42 (Cdc42) is | 1e-87 | |
| cd04132 | 197 | cd04132, Rho4_like, Ras homology family 4 (Rho4) o | 5e-78 | |
| cd04130 | 173 | cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W | 9e-75 | |
| cd04133 | 173 | cd04133, Rop_like, Rho-related protein from plants | 3e-70 | |
| cd01870 | 175 | cd01870, RhoA_like, Ras homology family A (RhoA)-l | 7e-70 | |
| cd04135 | 174 | cd04135, Tc10, Rho GTPase TC10 (Tc10) | 2e-69 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 1e-59 | |
| cd04131 | 176 | cd04131, Rnd, Rho family GTPase subfamily Rnd incl | 4e-53 | |
| cd04129 | 190 | cd04129, Rho2, Ras homology family 2 (Rho2) of sma | 8e-53 | |
| cd04134 | 185 | cd04134, Rho3, Ras homology family 3 (Rho3) of sma | 8e-53 | |
| cd04173 | 221 | cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | 1e-39 | |
| cd04172 | 182 | cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | 1e-38 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 3e-35 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 1e-34 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 4e-27 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-26 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 6e-26 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 7e-26 | |
| cd01873 | 195 | cd01873, RhoBTB, RhoBTB protein is an atypical mem | 7e-25 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 8e-22 | |
| smart00173 | 164 | smart00173, RAS, Ras subfamily of RAS small GTPase | 4e-19 | |
| smart00010 | 166 | smart00010, small_GTPase, Small GTPase of the Ras | 1e-18 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 2e-17 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 7e-16 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 2e-15 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-15 | |
| cd04138 | 162 | cd04138, H_N_K_Ras_like, Ras GTPase family contain | 2e-15 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 3e-15 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 3e-15 | |
| cd04145 | 164 | cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | 1e-14 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 2e-14 | |
| cd04136 | 164 | cd04136, Rap_like, Rap-like family consists of Rap | 5e-14 | |
| cd04177 | 168 | cd04177, RSR1, RSR1/Bud1p family GTPase | 2e-13 | |
| cd01866 | 168 | cd01866, Rab2, Rab GTPase family 2 (Rab2) | 3e-13 | |
| cd01862 | 172 | cd01862, Rab7, Rab GTPase family 7 (Rab7) | 9e-13 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 1e-12 | |
| cd04144 | 190 | cd04144, Ras2, Rat sarcoma (Ras) family 2 of small | 2e-12 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 5e-12 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 5e-12 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 9e-12 | |
| cd04176 | 163 | cd04176, Rap2, Rap2 family GTPase consists of Rap2 | 1e-11 | |
| cd04141 | 172 | cd04141, Rit_Rin_Ric, Ras-like protein in all tiss | 1e-11 | |
| cd04139 | 163 | cd04139, RalA_RalB, Ral (Ras-like) family containi | 2e-11 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 2e-11 | |
| PTZ00369 | 189 | PTZ00369, PTZ00369, Ras-like protein; Provisional | 3e-11 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 1e-10 | |
| cd04118 | 193 | cd04118, Rab24, Rab GTPase family 24 (Rab24) | 3e-10 | |
| PLN03108 | 210 | PLN03108, PLN03108, Rab family protein; Provisiona | 3e-10 | |
| cd04106 | 162 | cd04106, Rab23_like, Rab GTPase family 23 (Rab23)- | 4e-10 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 6e-10 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 2e-09 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 5e-09 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 6e-09 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 1e-08 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 1e-08 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 1e-08 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 2e-08 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 1e-07 | |
| cd04175 | 164 | cd04175, Rap1, Rap1 family GTPase consists of Rap1 | 1e-07 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 4e-07 | |
| cd04124 | 161 | cd04124, RabL2, Rab GTPase-like family 2 (Rab-like | 5e-07 | |
| PLN03110 | 216 | PLN03110, PLN03110, Rab GTPase; Provisional | 1e-06 | |
| cd04116 | 170 | cd04116, Rab9, Rab GTPase family 9 (Rab9) | 1e-06 | |
| cd04101 | 167 | cd04101, RabL4, Rab GTPase-like family 4 (Rab-like | 2e-06 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 5e-06 | |
| cd04128 | 182 | cd04128, Spg1, Septum-promoting GTPase (Spg1) | 6e-06 | |
| cd04148 | 219 | cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam | 6e-06 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 7e-06 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 1e-05 | |
| PLN03071 | 219 | PLN03071, PLN03071, GTP-binding nuclear protein Ra | 1e-05 | |
| PTZ00099 | 176 | PTZ00099, PTZ00099, rab6; Provisional | 2e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 3e-05 | |
| cd04119 | 168 | cd04119, RJL, Rab GTPase family J-like (RabJ-like) | 1e-04 | |
| cd04120 | 202 | cd04120, Rab12, Rab GTPase family 12 (Rab12) | 2e-04 | |
| smart00176 | 200 | smart00176, RAN, Ran (Ras-related nuclear proteins | 3e-04 | |
| cd04107 | 201 | cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1 | 6e-04 | |
| cd04146 | 166 | cd04146, RERG_RasL11_like, Ras-related and Estroge | 7e-04 | |
| cd04174 | 232 | cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | 0.001 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.004 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 0.004 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 0.004 |
| >gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3 | Back alignment and domain information |
|---|
Score = 342 bits (880), Expect = e-122
Identities = 156/212 (73%), Positives = 162/212 (76%), Gaps = 48/212 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 11 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 71 PQT------------------------------------------------DVFLICFSL 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 83 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 142
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAV
Sbjct: 143 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-113
Identities = 125/215 (58%), Positives = 146/215 (67%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLI YTTNAFP +Y+PTVF+NYSA+V VDGKP+ LGLWDTAGQEDYDRLRPLSY
Sbjct: 8 AVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSY 67
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF ICFS+
Sbjct: 68 PDT------------------------------------------------DVFLICFSV 79
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+PASFENV+ KWYPEV+H CP+ PIILVGTKLDLR+DK T+E+L +KK P+TY QG +
Sbjct: 80 DSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQA 139
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AK IGAVKYLECSALTQ+G++ VF+EAIRA L
Sbjct: 140 LAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174 |
| >gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = e-104
Identities = 126/211 (59%), Positives = 145/211 (68%), Gaps = 49/211 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNYSANV VDGK +NLGLWDTAGQE+YDRLRPLSY
Sbjct: 10 AVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEEYDRLRPLSY 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 70 PQT------------------------------------------------DVFLLCFSV 81
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P+SFENV+ KWYPE++H+CP+ PIILVGTK+DLRDD T++KL EKK PIT +G
Sbjct: 82 DSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDGNTLKKL-EKKQKPITPEEGEK 140
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+AKEIGAVKY+ECSALTQ+GLK VFDEAIRA
Sbjct: 141 LAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171
|
Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171 |
| >gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 262 bits (670), Expect = 1e-89
Identities = 125/228 (54%), Positives = 148/228 (64%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLI YTTNAFP EYIPTVFDNYSA VDG+ ++L LWDTAGQE+YDRLR LSY
Sbjct: 13 AVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT +VF ICFS+
Sbjct: 73 PQT------------------------------------------------NVFIICFSI 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P+S+ENVR KW+PEV HHCP+ PI+LVGTK DLR+D +T++KLKE+ APIT QG +
Sbjct: 85 ASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+AK+I AVKYLECSAL Q G+K VF EA+RAVL P P + K CVLL
Sbjct: 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP-IKDTKSCVLL 191
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191 |
| >gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family | Back alignment and domain information |
|---|
Score = 256 bits (655), Expect = 1e-87
Identities = 117/213 (54%), Positives = 137/213 (64%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 11 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF +CFS+
Sbjct: 71 PQT------------------------------------------------DVFLVCFSV 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TIEKL + K PIT G
Sbjct: 83 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK 142
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ AVKY+ECSALTQKGLK VFDEAI A L
Sbjct: 143 LARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 5e-78
Identities = 101/233 (43%), Positives = 121/233 (51%), Gaps = 54/233 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYDRLRPLS 59
GKTCLL+ Y +FP EY+PTVF+NY + V +GK I L LWDTAGQEDYDRLRPLS
Sbjct: 13 GCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQEDYDRLRPLS 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
YP DV IC+S
Sbjct: 73 YPDV------------------------------------------------DVILICYS 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ NP S +NV KWYPEV H CP TPI+LVG K DLR DK ++ KL+ + L P+T QG
Sbjct: 85 VDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGE 144
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL-----CPVPTVPKKKRCVL 227
S+AK IGAV Y+ECSA + + VFD AI L KKK +L
Sbjct: 145 SVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGRAARKKKKKKKCVIL 197
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197 |
| >gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42 | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 9e-75
Identities = 94/211 (44%), Positives = 123/211 (58%), Gaps = 48/211 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKT L++SYTTN +P EY+PT FDN+S V+VDGKP+ L L DTAGQ+++D+LRPL Y
Sbjct: 10 AVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCY 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF +CFS+
Sbjct: 70 PDT------------------------------------------------DVFLLCFSV 81
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNP+SF+N+ KW PE+R H P PIILVGT+ DLR D + +L P++ + +
Sbjct: 82 VNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKA 141
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+A++IGA +Y+ECSALTQK LK VFD AI A
Sbjct: 142 LAEKIGACEYIECSALTQKNLKEVFDTAILA 172
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 3e-70
Identities = 105/213 (49%), Positives = 128/213 (60%), Gaps = 50/213 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 11 AVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
GA DVF + FSL
Sbjct: 71 R----------GA--------------------------------------DVFLLAFSL 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
++ AS+ENV KW PE+RH+ P PI+LVGTKLDLRDDK+ PIT QG
Sbjct: 83 ISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDDKQFF--ADHPGAVPITTAQGEE 140
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ K+IGA Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 141 LRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173 |
| >gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 7e-70
Identities = 96/213 (45%), Positives = 124/213 (58%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 11 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 71 PDT------------------------------------------------DVILMCFSI 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ TI +L + K P+ +G +
Sbjct: 83 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRA 142
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA++IGA YLECSA T++G++ VF+ A RA L
Sbjct: 143 MAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175 |
| >gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10) | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 2e-69
Identities = 109/213 (51%), Positives = 135/213 (63%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 10 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF ICFS+
Sbjct: 70 PMT------------------------------------------------DVFLICFSV 81
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASF+NV+ +W PE++ + P+ P +L+GT++DLRDD +T+ +L + K PIT QG
Sbjct: 82 VNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQK 141
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+AKEIGA Y+ECSALTQKGLKTVFDEAI A+L
Sbjct: 142 LAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-59
Identities = 66/215 (30%), Positives = 97/215 (45%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LLI +T N FP EYIPT+ D Y+ + VDGK + L +WDTAGQE + LRPL
Sbjct: 9 GVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLY 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y F + +
Sbjct: 69 YRGA------------------------------------------------QGFLLVYD 80
Query: 120 LVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ + SFENV+ KW E+ H + PI+LVG K DL D + ++ +G
Sbjct: 81 ITSRDSFENVK-KWLEEILRHADENVPIVLVGNKCDLEDQR------------VVSTEEG 127
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++AKE+G + ++E SA T + ++ F+E R +L
Sbjct: 128 EALAKELG-LPFMETSAKTNENVEEAFEELAREIL 161
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8 | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 4e-53
Identities = 77/212 (36%), Positives = 109/212 (51%), Gaps = 49/212 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + ++FP Y+PTVF+NY+A+ VD + I L LWDT+G YD +RPLSYP
Sbjct: 13 GKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPYYDNVRPLSYPD 72
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D ICF +
Sbjct: 73 S------------------------------------------------DAVLICFDISR 84
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA 182
P + ++V KW EVR CP+TP++LVG K DLR D T+ +L K+ P+++ QG ++A
Sbjct: 85 PETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLA 144
Query: 183 KEIGAVKYLECSALT-QKGLKTVFDEAIRAVL 213
K+IGA Y+ECSA T + ++ VF+ A A L
Sbjct: 145 KQIGAAAYVECSAKTSENSVRDVFEMATLACL 176
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176 |
| >gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 8e-53
Identities = 86/213 (40%), Positives = 106/213 (49%), Gaps = 50/213 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKT LL +T FP EY PTVF+NY + VDGKP+ L LWDTAGQE+Y+RLRPLSY
Sbjct: 11 ACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ V I F++
Sbjct: 71 SKA------------------------------------------------HVILIGFAI 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P S ENVR KW EVR +CP+ P+ILVG K DLR + + PI Q
Sbjct: 83 DTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQ--QAKL 140
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+ IGA KY+ECSALT +G+ VF+ A RA L
Sbjct: 141 VARAIGAKKYMECSALTGEGVDDVFEAATRAAL 173
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190 |
| >gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 8e-53
Identities = 84/227 (37%), Positives = 110/227 (48%), Gaps = 52/227 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKT LL +T FP Y PTVF+NY ++ VDG + L LWDTAGQE++DRLR LSY
Sbjct: 10 ACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEFDRLRSLSY 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T V +CFS+
Sbjct: 70 ADT------------------------------------------------HVIMLCFSV 81
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
NP S ENV +KW E+RHHCP ++LV K DLR+ + E+ + I+Y +GL+
Sbjct: 82 DNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN--ERDRGTHT--ISYEEGLA 137
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVL 227
+AK I A +YLECSA +G+ F EA R L P P + C +
Sbjct: 138 VAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPHSRACTI 184
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185 |
| >gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-39
Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 49/204 (24%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + + +P Y+PTVF+NY+A+ +D I L +WDT+G YD +RPL+YP
Sbjct: 13 GKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYYDNVRPLAYPD 72
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
D ICF +
Sbjct: 73 ------------------------------------------------SDAVLICFDISR 84
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA 182
P + ++V KW E + CP+ ++LVG KLD+R D T+ +L +++L P+T+ QG +A
Sbjct: 85 PETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLA 144
Query: 183 KEIGAVKYLECSA-LTQKGLKTVF 205
+++GAV Y+ECS+ +++ ++ VF
Sbjct: 145 RQLGAVAYVECSSRMSENSVRDVF 168
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221 |
| >gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases | Back alignment and domain information |
|---|
Score = 132 bits (332), Expect = 1e-38
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 49/210 (23%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSYP
Sbjct: 17 GKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 76
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D ICF +
Sbjct: 77 S------------------------------------------------DAVLICFDISR 88
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA 182
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +MA
Sbjct: 89 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 148
Query: 183 KEIGAVKYLECSAL-TQKGLKTVFDEAIRA 211
K+IGA Y+ECSAL ++ ++ +F A A
Sbjct: 149 KQIGAATYIECSALQSENSVRDIFHVATLA 178
|
Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 3e-35
Identities = 71/221 (32%), Positives = 106/221 (47%), Gaps = 49/221 (22%)
Query: 3 GKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 25 GKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 84
Query: 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122
+ D +CF +
Sbjct: 85 S------------------------------------------------DAVLLCFDISR 96
Query: 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA 182
P F++ KW E+ +CPST I+L+G K DLR D T+ +L +K API+Y QG +MA
Sbjct: 97 PEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMA 156
Query: 183 KEIGAVKYLECSALT-QKGLKTVFDEAIRAVLCPVPTVPKK 222
K++GA YLECSA T +K + ++F A + + + KK
Sbjct: 157 KQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPLAKK 197
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-34
Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 64/212 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT LL+ + N F Y T+ D S + VDGK + L +WDTAGQE + +
Sbjct: 10 GVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSY 69
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 70 Y------------------------------------------------RGAHGAILVYD 81
Query: 120 LVNPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ N SFEN+ KW E++ + P PIILVG K DL D+++ ++ +
Sbjct: 82 VTNRESFENLD-KWLNELKEYAPPNIPIILVGNKSDLEDERQ------------VSTEEA 128
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
AKE G + E SA T + + F+ R
Sbjct: 129 QQFAKENGL-LFFETSAKTGENVDEAFESLAR 159
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 4e-27
Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 54/219 (24%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT LL + FP Y PT+ + A + + I L LWDTAGQE+Y LRP
Sbjct: 15 GVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + I +
Sbjct: 75 YRG------------------------------------------------ANGILIVYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDDKETIEKLKEKKLAPITYP-- 176
S + + +W E+R P PI+LVG K+DL D++ + E++ + +
Sbjct: 87 STLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVL 146
Query: 177 QGLSMAKEIGAVKYLECSA--LTQKGLKTVFDEAIRAVL 213
++ E+ LE SA LT + +F E +R +L
Sbjct: 147 APKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185
|
Length = 219 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-26
Identities = 51/200 (25%), Positives = 63/200 (31%), Gaps = 55/200 (27%)
Query: 1 AVGKTCLLISYTTN-AFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGK+ LL N EY P NY + + DGK L DTAGQEDYD +R L
Sbjct: 11 NVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRL 70
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y + F
Sbjct: 71 YYRAV------------------------------------------------ESSLRVF 82
Query: 119 SLVNPA-SFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRD---DKETIEKLKEKKLAPI 173
+V E + K E+ HH S PIILVG K+DLRD + PI
Sbjct: 83 DIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPI 142
Query: 174 TYPQGLSMAKEIGAVKYLEC 193
+ A K +E
Sbjct: 143 IPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 6e-26
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T F +Y T+ D + + VDGK + L +WDTAGQE R R +
Sbjct: 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE---RFRSIT 66
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y R + + +
Sbjct: 67 SSY---------------Y-------------------RGAVGAL-------------LV 79
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + N SFEN+ W E+R + I+LVG K DL + ++ ++
Sbjct: 80 YDITNRESFENLE-NWLKELREYASPNVVIMLVGNKSDLEEQRQ------------VSRE 126
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + A+E G + + E SA T ++ F+E R +L
Sbjct: 127 EAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAREIL 162
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 7e-26
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 66/213 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F EY PT+ D+Y ++VDG+ L + DTAGQE++ +R
Sbjct: 9 GVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEFSAMRDQYI 68
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D F + +S+
Sbjct: 69 ------------------------------------------------RNGDGFILVYSI 80
Query: 121 VNPASFENV---RAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ SFE + R + V+ PI+LVG K DL ++++ ++ +
Sbjct: 81 TSRESFEEIKNIREQIL-RVK-DKEDVPIVLVGNKCDLENERQ------------VSTEE 126
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
G ++A+E G +LE SA T + +F+ +R
Sbjct: 127 GEALAEEWG-CPFLETSAKTNINIDELFNTLVR 158
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 7e-25
Identities = 76/234 (32%), Positives = 103/234 (44%), Gaps = 74/234 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYI------PTVF--DNY--------SANVMVDGKPINLGLW 44
AVGKT L+ + N +Y PTV+ D Y + +VDG ++L LW
Sbjct: 12 AVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLW 71
Query: 45 DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 104
DT G D+D+ R +Y
Sbjct: 72 DTFG--DHDKDRRFAY-------------------------------------------- 85
Query: 105 VPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD-DKETIE 163
R DV +CFS+ +P S NV+ WYPE+RH CP P+ILVG KLDLR D + +
Sbjct: 86 ----GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVN 141
Query: 164 KLKEKKLAPITY------PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+ + PI G ++AKE+G + Y E S +TQ G+K VFD AIRA
Sbjct: 142 RARRPLARPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 8e-22
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 64/208 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT ++ + + F +Y T+ D S + VD K + L LWDTAGQE + L P S
Sbjct: 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLIP-S 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y IR V + +
Sbjct: 69 Y----------------------------------IRDSSVAV-------------VVYD 81
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ N SF+N KW +VR + II LVG K DL D ++ ++ +G
Sbjct: 82 ITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDKRQ------------VSTEEG 128
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFD 206
AKE A ++E SA +K +F
Sbjct: 129 EKKAKENNA-MFIETSAKAGHNVKQLFK 155
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 4e-19
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 72/218 (33%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + F +Y PT+ D+Y + +DG+ L + DTAGQE++ +R Y
Sbjct: 10 GVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ-Y 68
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TG + F + +S+
Sbjct: 69 MRTG-----------------------------------------------EGFLLVYSI 81
Query: 121 VNPASFENVRAKWYPEVRHH------CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ SFE ++ + R PI+LVG K DL ++ ++
Sbjct: 82 TDRQSFEEIK-----KFREQILRVKDRDDVPIVLVGNKCDLESERV------------VS 124
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+G +A++ G +LE SA + + F + +R +
Sbjct: 125 TEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREI 161
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164 |
| >gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-18
Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 64/213 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L I + F EY PT+ D+Y + +DG+ L + DTAGQE++ +R Y
Sbjct: 13 VGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ-YM 71
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+TG + F + +S+
Sbjct: 72 RTG-----------------------------------------------EGFLLVYSIT 84
Query: 122 NPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE + K+ ++ PI+LVG K DL +++ ++ +G
Sbjct: 85 DRQSFEEIA-KFREQILRVKDRDDVPIVLVGNKCDLENERV------------VSTEEGK 131
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A++ G +LE SA + + F + +R +
Sbjct: 132 ELARQWG-CPFLETSAKERINVDEAFYDLVREI 163
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-17
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ ++ ++F +I T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 13 GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE---RFRTIT 69
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA+ G+ V+D
Sbjct: 70 TSYYR---------GAM-----------GIILVYD------------------------- 84
Query: 118 FSLVNPASFENVRAKWYPEV-RHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + SFEN++ W + H +LVG K D+ + + ++
Sbjct: 85 --ITDEKSFENIK-NWMRNIDEHASEDVERMLVGNKCDMEEKRV------------VSKE 129
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G ++A+E G +K+LE SA ++ F + +L
Sbjct: 130 EGEALAREYG-IKFLETSAKANINVEEAFLTLAKDIL 165
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 7e-16
Identities = 59/200 (29%), Positives = 77/200 (38%), Gaps = 66/200 (33%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T F PTV D +S + + G I L LWDTAGQE R R
Sbjct: 13 VGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE---RFR--- 66
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
I Y G+ VFD
Sbjct: 67 ----------SITRSYYRNSV-----GVLLVFD--------------------------- 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ N SFE+V W E R H P P+ ILVG K DL ++ +T +
Sbjct: 85 ITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLESQRQ------------VTREE 131
Query: 178 GLSMAKEIGAVKYLECSALT 197
+AK++G +KY+E SA T
Sbjct: 132 AEKLAKDLG-MKYIETSART 150
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-15
Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 70/216 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL-- 58
VGK+ LL+ +T + F + T+ D V VDGK + L +WDTAGQE R R L
Sbjct: 11 VGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE---RFRTLTS 67
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
SY + GA +G+ V+D
Sbjct: 68 SYYR---------GA-----------QGVILVYD-------------------------- 81
Query: 119 SLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ +F+N+ W E+ + P +LVG K+ DKE E +E
Sbjct: 82 -VTRRDTFDNLD-TWLNELDTYSTNPDAVKMLVGNKI----DKENREVTRE--------- 126
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+G A++ + ++E SA T+ G++ F+E + +
Sbjct: 127 EGQKFARKHNML-FIETSAKTRIGVQQAFEELVEKI 161
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-15
Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 63/213 (29%)
Query: 2 VGKTCLLISYTTNAF---PGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ LL + T D Y + + L DT G +++ L
Sbjct: 8 VGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLDEFGGLG- 64
Query: 58 LSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+ A + + D+ +
Sbjct: 65 --------------------------------REELARLLL----------RGADLILLV 82
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ S E+ AK R PIILVG K+DL +++E E L+ ++L
Sbjct: 83 VDSTDRESEED--AKLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEEL------- 133
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
+I V E SA T +G+ +F++ I
Sbjct: 134 -----AKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-15
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 65/213 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y
Sbjct: 12 VGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD-QYM 70
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+TG + F F++
Sbjct: 71 RTG-----------------------------------------------EGFLCVFAIN 83
Query: 122 NPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE++ + +++ P++LVG K DL ++ QG
Sbjct: 84 SRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAART-------------VSTRQGQ 129
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+AK G Y+E SA T++G++ F +R +
Sbjct: 130 DLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI 161
|
H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-15
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 64/213 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+CLL + N F + T+ + + V+ V GK + L +WDTAGQE R R
Sbjct: 11 TGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE---RFR---- 63
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
S+ + Y +A G V+D +
Sbjct: 64 -----SVTRS-----YYRGAA----GALLVYD---------------------------I 82
Query: 121 VNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SF + W + R P IILVG K DL DD+E +T+ +
Sbjct: 83 TSRESFNAL-TNWLTDARTLASPDIVIILVGNKKDLEDDRE------------VTFLEAS 129
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G + +LE SALT + ++ F + R++
Sbjct: 130 RFAQENG-LLFLETSALTGENVEEAFLKCARSI 161
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-15
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEK 168
++ +V + +S+ P++ E +R KW P +R PIILVG K DLRD E+
Sbjct: 71 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAG--LEE 128
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
++ PI ++ +EI +ECSA T + VF A +AVL P
Sbjct: 129 EMLPI-----MNEFREIET--CVECSAKTLINVSEVFYYAQKAVLHP 168
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3 | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-14
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 64/213 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L I + + F +Y PT+ D+Y+ +DG+ L + DTAGQE++ +R Y
Sbjct: 13 VGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQEEFSAMRE-QYM 71
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+TG + F + FS+
Sbjct: 72 RTG-----------------------------------------------EGFLLVFSVT 84
Query: 122 NPASFENVRAKWYPEVRH--HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE V K++ ++ P+ILVG K DL ++ ++ +G
Sbjct: 85 DRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQRQ------------VSREEGQ 131
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+++ + Y+E SA + + F + +R +
Sbjct: 132 ELARQL-KIPYIETSAKDRVNVDKAFHDLVRVI 163
|
The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-14
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 70/218 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
+VGK+ +++ + N F T+ F + V +D + +WDTAGQE Y L P
Sbjct: 11 SVGKSSIVLRFVKNEFSENQESTIGAAFLTQT--VNLDDTTVKFEIWDTAGQERYRSLAP 68
Query: 58 LSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+ Y GA +A+ V+D
Sbjct: 69 MYYR----------GA-----AAAI------VVYD------------------------- 82
Query: 118 FSLVNPASFENVRAK-WYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ + SFE +AK W E++ H P+ I L G K DL ++ ++
Sbjct: 83 --ITSEESFE--KAKSWVKELQEHGPPNIVIALAGNKADLESKRQ------------VST 126
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A E G + ++E SA T + + +F E R +
Sbjct: 127 EEAQEYADENGLL-FMETSAKTGENVNELFTEIARKLP 163
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1 | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-14
Identities = 47/219 (21%), Positives = 83/219 (37%), Gaps = 75/219 (34%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L + + F +Y PT+ D+Y + VD + L + DTAG E + +R L Y
Sbjct: 12 VGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQFTAMRDL-YI 70
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+ G F + +S+
Sbjct: 71 KNGQG-----------------------------------------------FALVYSIT 83
Query: 122 NPASFEN--------VRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
SF + +R K +V P+ILVG K DL D++ +
Sbjct: 84 AQQSFNDLQDLREQILRVKDTEDV-------PMILVGNKCDLEDERV------------V 124
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ +G ++A++ G +LE SA ++ + +F + +R +
Sbjct: 125 SKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-13
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 59/213 (27%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L + + N F Y PT+ D+Y V +DG+ +L + DTAG E + +R L Y
Sbjct: 12 VGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL-YI 70
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
++G +G V+ A L + + R V +I S
Sbjct: 71 KSG--------------------QGFLLVYSVTSEASLNELGEL----REQVLRIKDS-- 104
Query: 122 NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM 181
+NV P++LVG K DL DD++ ++ G+S+
Sbjct: 105 -----DNV---------------PMVLVGNKADLEDDRQ------------VSREDGVSL 132
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+++ G V + E SA + + VF + +R ++C
Sbjct: 133 SQQWGNVPFYETSARKRTNVDEVFIDLVRQIIC 165
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168 |
| >gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2) | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-13
Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ +T F + T+ + A ++ +DGK I L +WDTAGQE + R S
Sbjct: 14 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF-RSITRS 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + GA AL V+D R
Sbjct: 73 YYR---------GA-----AGAL------LVYDITRR----------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+F ++ W + R H + I+L+G K DL +E ++Y +G
Sbjct: 90 ----ETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE------------VSYEEG 132
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E G + ++E SA T ++ F + +
Sbjct: 133 EAFAREHGLI-FMETSAKTASNVEEAFINTAKEIY 166
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168 |
| >gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 9e-13
Identities = 55/218 (25%), Positives = 81/218 (37%), Gaps = 67/218 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L+ Y F +Y T+ D + V VD + + L +WDTAGQE R S
Sbjct: 11 VGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE-----RFQS- 64
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
L +A GA +C L V+D +
Sbjct: 65 ----LGVAFYRGA----DCCVL-------VYD---------------------------V 82
Query: 121 VNPASFENVRAKWYPEVRHH-CPST----PIILVGTKLDLRDDKETIEKLKEKKLAPITY 175
NP SFE++ + W E P P +++G K+DL ++K + K ++
Sbjct: 83 TNPKSFESLDS-WRDEFLIQASPRDPENFPFVVLGNKIDL-EEKRQVSTKKAQQW----- 135
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
K G + Y E SA + F+ R L
Sbjct: 136 ------CKSKGNIPYFETSAKEAINVDQAFETIARLAL 167
|
Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 68/198 (34%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL-- 58
VGK+CLL+ + + + YI T+ D + +DGK + L +WDTAGQE R R +
Sbjct: 13 VGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE---RFRTITS 69
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
SY + GA G+ V+D
Sbjct: 70 SYYR---------GA-----------HGIIIVYD-------------------------- 83
Query: 119 SLVNPASFENVRAKWYPEV-RHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF NV+ +W E+ R+ + +LVG K DL D K + Y +
Sbjct: 84 -VTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDKKV------------VDYTE 129
Query: 178 GLSMAKEIGAVKYLECSA 195
A E+G + +LE SA
Sbjct: 130 AKEFADELG-IPFLETSA 146
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-12
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 78/243 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKT L I N F Y PT+ D+Y V+VDG+P L + DTAGQE+Y LR
Sbjct: 10 VGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALR----- 64
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
D+ IR + F + +S+
Sbjct: 65 ------------------------------DQWIR-------------EGEGFILVYSIT 81
Query: 122 NPASFENVRAKWYPEVRHHCPST----PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ ++FE V ++ +++ + PI++VG K D ++E ++ +
Sbjct: 82 SRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKVYERE------------VSTEE 128
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA---------VLCPVPTVP---KKKRC 225
G ++A+ +G +++E SA T ++ F +RA PT KK++C
Sbjct: 129 GAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKC 187
Query: 226 VLL 228
V++
Sbjct: 188 VIM 190
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-12
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 66/231 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L + + F Y PT+ + +S + G+ +L + DTAGQ++Y L
Sbjct: 11 SVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEYSIL----- 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQ IG Y+ + +S+
Sbjct: 66 PQKYS-----IGIHGYI--------------------------------------LVYSV 82
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE V+ + + S PI+LVG K DL +++ ++ +G
Sbjct: 83 TSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMERQ------------VSAEEGK 130
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFD---EAIRAVLCPVPTVPKKKRCVL 227
+A+ GA +LE SA + ++ F+ E I V P+P +K +C +
Sbjct: 131 KLAESWGA-AFLESSAKENENVEEAFELLIEEIEKVENPLPP-GQKSKCSV 179
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-12
Identities = 56/209 (26%), Positives = 79/209 (37%), Gaps = 75/209 (35%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-----------DGKPINLGLWDTAGQE 50
VGKT L YT N F ++I TV ++ +V ++L LWDTAGQE
Sbjct: 15 VGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHLQLWDTAGQE 74
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 110
R R L +A F +A+
Sbjct: 75 ---RFRSL--------------------TTAF--------FRDAMG-------------- 89
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEK 168
F + F L + SF NVR W +++ H C + I+L+G K DL D +E E+
Sbjct: 90 ---FLLMFDLTSEQSFLNVR-NWMSQLQAHAYCENPDIVLIGNKADLPDQREVSER---- 141
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSALT 197
Q +A + G + Y E SA T
Sbjct: 142 --------QARELADKYG-IPYFETSAAT 161
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 9e-12
Identities = 57/212 (26%), Positives = 82/212 (38%), Gaps = 74/212 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ LL +T N F + T+ F + + +DGK I +WDTAGQE Y
Sbjct: 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRT--IQIDGKTIKAQIWDTAGQERY----- 65
Query: 58 LSYPQTGLSMAKEIGAVKYLECSALTQ---KGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114
A+T +G A+ A+L V+
Sbjct: 66 ----------------------RAITSAYYRG-------AVGALL-------------VY 83
Query: 115 QICFSLVNPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
I ++FENV +W E+R H S I+LVG K DLR + + + K A
Sbjct: 84 DIT----KKSTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA-VPTEEAKAFAE- 136
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVF 205
GLS ++E SAL ++ F
Sbjct: 137 --KNGLS---------FIETSALDGTNVEEAF 157
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-11
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 62/210 (29%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L Y
Sbjct: 12 VGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL-YI 70
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+ G F + +SLV
Sbjct: 71 KNGQG-----------------------------------------------FIVVYSLV 83
Query: 122 NPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N +F++++ VR PIILVG K+DL ++E ++ +G +
Sbjct: 84 NQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE------------VSSAEGRA 131
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
+A+E G ++E SA ++ + +F E +R
Sbjct: 132 LAEEWGC-PFMETSAKSKTMVNELFAEIVR 160
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric) | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-11
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 68/212 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ + + + +++FP + PT+ D Y +D +P L + DTAGQ ++ +R
Sbjct: 13 VGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQAEFTAMRD---- 68
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+Y+ C + F IC+S+
Sbjct: 69 -------------QYMRCG-------------------------------EGFIICYSVT 84
Query: 122 NPASFENVRA--KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SF+ + VR P++LVG K+DL ++ +T +G
Sbjct: 85 DRHSFQEASEFKELITRVR-LTEDIPLVLVGNKVDL------------EQQRQVTTEEGR 131
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
++A+E + E SA L+ D+A
Sbjct: 132 NLAREFNC-PFFETSA----ALRFYIDDAFHG 158
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172 |
| >gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 62/212 (29%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L + + + F +Y PT D+Y V++DG+ + L + DTAGQEDY +R
Sbjct: 11 VGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDYAAIR----- 65
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
D R+ + F + FS+
Sbjct: 66 ------------------------------DNYFRS-------------GEGFLLVFSIT 82
Query: 122 NPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ SF + +R + P++LVG K DL +DK + + LA
Sbjct: 83 DMESFTALAEFREQILRVKEDDNVPLLLVGNKCDL-EDKRQVSVEEAANLA--------- 132
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
E V Y+E SA T+ + VF + +R +
Sbjct: 133 ---EQWGVNYVETSAKTRANVDKVFFDLVREI 161
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-11
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L++ Y N F ++ T + + V + GK I+L +WDTAGQE Y L P+ Y
Sbjct: 11 VGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYY 70
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-11
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 60/211 (28%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGK+ L I + N F EY PT+ D+Y ++D + L + DTAGQE+Y +R Y
Sbjct: 16 VGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD-QYM 74
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
+TG +L ++T ++ F+E I + + V K R
Sbjct: 75 RTGQG---------FLCVYSITS---RSSFEE-IASFREQILRVKDKDR----------- 110
Query: 122 NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM 181
P+ILVG K DL +++ ++ +G +
Sbjct: 111 ----------------------VPMILVGNKCDLDSERQ------------VSTGEGQEL 136
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
AK G + +LE SA + + F E +R +
Sbjct: 137 AKSFG-IPFLETSAKQRVNVDEAFYELVREI 166
|
Length = 189 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 65/200 (32%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPL 58
VGKTCLL+ + AF G +I TV ++ V+ VDG + L +WDTAGQE R R +
Sbjct: 10 GVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE---RFRSV 66
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
++ Y + AL + +
Sbjct: 67 TH-------------AYYRDAHALL--------------------------------LLY 81
Query: 119 SLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ N +SF+N+RA W E+ + S +I L+G K D+ ++ +
Sbjct: 82 DVTNKSSFDNIRA-WLTEILEYAQSDVVIMLLGNKADMSGERV------------VKRED 128
Query: 178 GLSMAKEIGAVKYLECSALT 197
G +AKE G V ++E SA T
Sbjct: 129 GERLAKEYG-VPFMETSAKT 147
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24) | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-10
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 60/207 (28%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPL 58
+VGKT L+ Y + F G Y T+ + A M V + + LG+WDTAG E Y+ + +
Sbjct: 10 SVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRI 69
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y +G K AI +C+
Sbjct: 70 YY------------------------RGAKA----AI--------------------VCY 81
Query: 119 SLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
L + +SFE + W E+++ I L GTK DL IE +++ L + +
Sbjct: 82 DLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDL------IE--QDRSLRQVDFHDV 132
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVF 205
A EI A ++ E S+ T + + +F
Sbjct: 133 QDFADEIKA-QHFETSSKTGQNVDELF 158
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193 |
| >gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 3e-10
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 64/206 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+CLL+ +T F + T+ + A + +D KPI L +WDTAGQE + R SY
Sbjct: 17 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF-RSITRSY 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ GA G V+D R
Sbjct: 76 YR---------GAA-----------GALLVYDITRRETF--------------------- 94
Query: 121 VNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
N A W + R H + I+L+G K DL + ++ +G
Sbjct: 95 -------NHLASWLEDARQHANANMTIMLIGNKCDLAHRR------------AVSTEEGE 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVF 205
AKE G + ++E SA T + ++ F
Sbjct: 136 QFAKEHGLI-FMEASAKTAQNVEEAF 160
|
Length = 210 |
| >gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-10
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 56/175 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ ++ + F +Y T+ F + + + L LWDTAGQE++D
Sbjct: 10 NVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD---- 65
Query: 58 LSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
A+T+ + A +L
Sbjct: 66 -----------------------AITKA----YYRGAQACIL-----------------V 81
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD----KETIEKLKEK 168
FS + SFE + W +V C P++LV TK+DL D E E L ++
Sbjct: 82 FSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKR 135
|
Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 6e-10
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50
VGK+ L + + T F GEY P + YS V +DG+ ++L + DT GQ+
Sbjct: 10 VGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQ 58
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-09
Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 50/184 (27%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ LL+ + N F G YI T+ D V ++G+ + L +WDTAGQE + + Y
Sbjct: 17 VGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T G+ V+D +
Sbjct: 77 RGT---------------------HGVIVVYD---------------------------V 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N SF NV+ +W E+ +C +LVG K D + K + K + +
Sbjct: 89 TNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET 147
Query: 181 MAKE 184
AKE
Sbjct: 148 SAKE 151
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-09
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 64/213 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+CLL +T F + T+ + ++ V+G+ I L +WDTAGQE R R ++
Sbjct: 13 VGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE---RFRAVTR 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
Y +A G V+D R+ + +
Sbjct: 70 --------------SYYRGAA----GALMVYDITRRSTYNHLSS---------------- 95
Query: 121 VNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
W + R+ P+T I L+G K DL ++ +TY +
Sbjct: 96 ------------WLTDARNLTNPNTVIFLIGNKADLEAQRD------------VTYEEAK 131
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A E G + +LECSA T + ++ F E + +
Sbjct: 132 QFADENGLL-FLECSAKTGENVEDAFLETAKKI 163
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 46/163 (28%), Positives = 61/163 (37%), Gaps = 51/163 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE R R
Sbjct: 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE---RFRK-- 66
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
SM + + + AV VF +
Sbjct: 67 ------SMVQH--------------------YYRNVHAV--------------VF--VYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDDKE 160
+ N ASF ++ + W E H P ILVG K DLR+ +
Sbjct: 85 VTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQ 126
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-08
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKTCLL +T N F +I T+ D + VDG + + +WDTAGQE Y + Y
Sbjct: 11 VGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYY 70
Query: 61 PQT-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 110
+ G+ + +I + + + + E ++ +L ++KR
Sbjct: 71 RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 1e-08
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 69/212 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL+S+ +++ + PT+ D + V GK + L +WDTAGQE R R L
Sbjct: 24 GVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE---RFRTLT 79
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + +G+ V+D R
Sbjct: 80 SSYYRNA--------------------QGIILVYDVTRR--------------------- 98
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPII--LVGTKLDLRDDKETIEKLKEKKLAPITY 175
+F N+ W EV + + + LVG K+D +++ ++
Sbjct: 99 ------ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD------------VSR 140
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDE 207
+G+++AKE G + +LECSA T++ ++ F+E
Sbjct: 141 EEGMALAKEHGCL-FLECSAKTRENVEQCFEE 171
|
Length = 211 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-08
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 50/160 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT + + T F +YIPT+ + + + PI +WDTAGQE + LR
Sbjct: 19 GVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGY 78
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y I +C AI I F
Sbjct: 79 Y----------IKG----QC--------------AI--------------------IMFD 90
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ + +++NV W+ ++ C + PI+LVG K+D++D +
Sbjct: 91 VTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ 129
|
Length = 215 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 63/206 (30%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKTC++ + + F T+ +++ + + GK + L +WDTAGQE R R
Sbjct: 14 VGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---RFR---- 66
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+TQ + + A A+ I + +
Sbjct: 67 --------------------TITQ----SYYRSANGAI-----------------IAYDI 85
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+SFE+V W EV + + ++L+G K DL + +E + + +
Sbjct: 86 TRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE------------VLFEEAC 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVF 205
++A+ G + LE SA ++ F
Sbjct: 133 TLAEHYGILAVLETSAKESSNVEEAF 158
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 50/159 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT + + T F +Y+ T+ + + + + I +WDTAGQE + LR Y
Sbjct: 11 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
I +C AI I F +
Sbjct: 71 ----------IQG----QC--------------AI--------------------IMFDV 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
+ +++NV W+ ++ C + PI+L G K+D++D K
Sbjct: 83 TSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 120
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-07
Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 62/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E + +R L Y
Sbjct: 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-Y 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ G +G F + +S+
Sbjct: 70 MKNG--------------------QG---------------------------FVLVYSI 82
Query: 121 VNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 83 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQ 130
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ G +LE SA + + +F + +R +
Sbjct: 131 NLARQWGC-AFLETSAKAKINVNEIFYDLVRQI 162
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-07
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 65/216 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y ++F ++ TV D V + K I L +WDTAGQE Y +
Sbjct: 11 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAY 70
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA+ ++ + +
Sbjct: 71 YR----------GAMGFI--------------------------------------LMYD 82
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ N SF V+ W +++ + +ILVG K D+ D++ ++ +G
Sbjct: 83 ITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDER------------VVSAERG 129
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
+A ++G ++ E SA +K VF E + ++C
Sbjct: 130 RQLADQLG-FEFFEASAKENINVKQVF-ERLVDIIC 163
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2) | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-07
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 58/196 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L+ + + + + + T Y N +GK I + WDTAGQE + + S
Sbjct: 10 AVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA-S 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Y + A + F
Sbjct: 69 Y---------------YHKAHACI--------------------------------LVFD 81
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEK---LKEKKLAPITYP 176
+ +++N+ KWY E+R + P P I+V K+DL D +K EK P+ Y
Sbjct: 82 VTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDL--DPSVTQKKFNFAEKHNLPLYY- 137
Query: 177 QGLSMAKEIGAVKYLE 192
+S A VK +
Sbjct: 138 --VSAADGTNVVKLFQ 151
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161 |
| >gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 68/212 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ +L +T N F E T+ ++ + V+GK + +WDTAGQE Y + Y
Sbjct: 23 VGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
GAV G V+D + K++
Sbjct: 83 R----------GAV-----------GALLVYD------------ITKRQ----------- 98
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+F+NV+ +W E+R H S +I + G K DL L + G
Sbjct: 99 ----TFDNVQ-RWLRELRDHADSNIVIMMAGNKSDL------------NHLRSVAEEDGQ 141
Query: 180 SMAKEIGAVKYLECSAL----TQKGLKTVFDE 207
++A++ G + +LE SAL +K +T+ E
Sbjct: 142 ALAEKEG-LSFLETSALEATNVEKAFQTILLE 172
|
Length = 216 |
| >gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 74/220 (33%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGK+ L+ Y TN F + T+ F N ++ VDG + L +WDTAGQE + LR
Sbjct: 16 VGKSSLMNRYVTNKFDTQLFHTIGVEFLN--KDLEVDGHFVTLQIWDTAGQERFRSLR-- 71
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
P + D + F
Sbjct: 72 ----------------------------------------------TPFYRGSDCCLLTF 85
Query: 119 SLVNPASFENVRAKW------YPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP 172
S+ + SF+N+ + W Y +V+ S P +++G K+D+ + + + E+ +
Sbjct: 86 SVDDSQSFQNL-SNWKKEFIYYADVK-EPESFPFVILGNKIDIPERQVSTEEAQ------ 137
Query: 173 ITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ ++ G Y E SA + F+EA+R V
Sbjct: 138 -------AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4) | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 113 VFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDDKETIEKLKEKKL 170
V + + + N SF N ++W VR H TP +LVG K DL D +E
Sbjct: 79 VVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNKCDLTDRRE---------- 127
Query: 171 APITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+ Q ++A+ +K+ E SA G + F RA
Sbjct: 128 --VDAAQAQALAQANT-LKFYETSAKEGVGYEAPFLSLARA 165
|
RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-06
Identities = 31/155 (20%), Positives = 45/155 (29%), Gaps = 51/155 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ LL FP E + D + + + VDG L +WD G+E+
Sbjct: 10 SGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE--------- 60
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ K D + + L
Sbjct: 61 ------------------------------LKFEHIIFM---------KWADAILLVYDL 81
Query: 121 VNPASFENVRA--KWYPEVRHHCPSTPIILVGTKL 153
+ S V W P +R P+ILVG KL
Sbjct: 82 TDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-06
Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 55/169 (32%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+GKT L++ Y F EYI T+ N+ + + G I +WD GQ ++ + PL
Sbjct: 11 IGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPL-- 68
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
V +A+ F L
Sbjct: 69 -----------------------------VCKDAV-----------------AILFMFDL 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDL-----RDDKETIEK 164
++ +++ +WY + R + ILVGTK DL +++E I K
Sbjct: 83 TRKSTLNSIK-EWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITK 130
|
Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182 |
| >gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 24/108 (22%)
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVR------HHCPSTPIILVGTKLDLRDDKETIEK 164
D + I +S+ + +SFE E+R PIILVG K DL +E
Sbjct: 73 GDAYVIVYSVTDRSSFEKA-----SELRIQLRRARQAEDIPIILVGNKSDLVRSRE---- 123
Query: 165 LKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++ +G + A K++E SA Q + +F+ +R V
Sbjct: 124 --------VSVQEGRACAVVF-DCKFIETSAALQHNVDELFEGIVRQV 162
|
RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-06
Identities = 56/220 (25%), Positives = 84/220 (38%), Gaps = 87/220 (39%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVD---------GKPINLGLWDTAGQE 50
+VGKTCL+ + + VFD NY A + VD G P +L LWDTAGQE
Sbjct: 10 SVGKTCLINRFCKD---------VFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQE 60
Query: 51 DYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 110
+ K I + Y +G + +
Sbjct: 61 RF----------------KCIASTYY--------RGAQAII------------------- 77
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKK 169
I F L + AS E+ R ++ + PS+ ++ LVGTK DL
Sbjct: 78 -----IVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL-------------- 118
Query: 170 LAPITYPQ----GLSMAKEIGAVKYLECSALTQKGLKTVF 205
+P Y + +A+E+ A +Y SALT + ++ F
Sbjct: 119 SSPAQYALMEQDAIKLAREMKA-EYWAVSALTGENVRDFF 157
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 116 ICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ + + + SF+ V+ KW E++ + +++VG K+DL + ++
Sbjct: 78 LVYDITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQRV------------VS 124
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFD 206
+ AK +GA K+ E SA T KG++ +F
Sbjct: 125 KSEAEEYAKSVGA-KHFETSAKTGKGIEELFL 155
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 50/159 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT + + T F +Y PT+ + + + + I WDTAGQE + LR Y
Sbjct: 24 TGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY 83
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+C+ + +FD R VPT
Sbjct: 84 IHG--------------QCAII-------MFDVTARLTYKNVPT---------------- 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D+++ +
Sbjct: 107 ------------WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
|
Length = 219 |
| >gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 2e-05
Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 64/196 (32%)
Query: 14 NAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIG 72
+ F Y T+ D S + +D P+ L LWDTAGQE + L P
Sbjct: 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIP--------------- 47
Query: 73 AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAK 132
Y+ SA AI + + + N SFEN K
Sbjct: 48 --SYIRDSA-----------AAI--------------------VVYDITNRQSFENT-TK 73
Query: 133 WYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191
W ++ + II LVG K DL D L +TY +G+ A+E + +
Sbjct: 74 WIQDILNERGKDVIIALVGNKTDLGD------------LRKVTYEEGMQKAQEYNTM-FH 120
Query: 192 ECSALTQKGLKTVFDE 207
E SA +K +F +
Sbjct: 121 ETSAKAGHNIKVLFKK 136
|
Length = 176 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-05
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 VGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL+ +T FP G+ D V + G+ I L +WDTAGQE +
Sbjct: 18 VGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF 69
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-04
Identities = 42/219 (19%), Positives = 77/219 (35%), Gaps = 69/219 (31%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+C++ Y F +Y+PT+ +Y V V K + + +D +G +Y +R Y
Sbjct: 11 VGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T +G+ V+D +
Sbjct: 71 KDT---------------------QGVLLVYD---------------------------V 82
Query: 121 VNPASFENVRAKWYPEVRHHC------PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ SFE + W E++ + +++ K+DL + E
Sbjct: 83 TDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED---------- 131
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G A+ G KY E SA T +G+ +F +++
Sbjct: 132 --EGRLWAESKGF-KYFETSACTGEGVNEMFQTLFSSIV 167
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168 |
| >gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12) | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 63/218 (28%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L+ +T + F TV D V + GK I L +WDTAGQE ++ + Y
Sbjct: 11 VGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYY 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ KG+ V+D + KK+
Sbjct: 71 R---------------------SAKGIILVYD------------ITKKE----------- 86
Query: 121 VNPASFENVRAKWYPEV-RHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+F+++ KW + ++ ++LVG KLD D+E IT QG
Sbjct: 87 ----TFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE------------ITRQQGE 129
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
A++I +++ E SA + +F + + +L +P
Sbjct: 130 KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202 |
| >gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 50/158 (31%)
Query: 3 GKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR Y
Sbjct: 7 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
Q +C+ + +FD R VP
Sbjct: 67 QG--------------QCAII-------MFDVTARVTYKNVPN----------------- 88
Query: 122 NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159
W+ ++ C + PI+L G K+D++D K
Sbjct: 89 -----------WHRDLVRVCENIPIVLCGNKVDVKDRK 115
|
Ran is involved in the active transport of proteins through nuclear pores. Length = 200 |
| >gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 75/220 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPINLGLWDTAGQEDYDRLRPL 58
VGKT ++ Y F Y T+ +++ V+ + L LWD AGQE + + +
Sbjct: 10 GVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRV 69
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y A+ A+ I F
Sbjct: 70 YYK-------------------------------GAVGAI-----------------IVF 81
Query: 119 SLVNPASFENVRAKWYPEV--RHHCP---STPIILVGTKLDL--RDDKETIEKLKEKKLA 171
+ P++FE V KW ++ + P P +L+ K DL + E++ +
Sbjct: 82 DVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQF--- 137
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
KE G + + E SA + +EA+R
Sbjct: 138 ----------CKENGFIGWFETSAKENINI----EEAMRF 163
|
Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201 |
| >gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 7e-04
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLRDDKETIEKLKEK 168
D F + +S+ + +SF+ V +R P+ILVG K DL ++
Sbjct: 74 DGFVLVYSITDRSSFDVVSQ-LLQLIREIKKRDGEIPVILVGNKADLLHSRQ-------- 124
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRAV 212
++ +G +A E+G + + E SA ++ VF E R V
Sbjct: 125 ----VSTEEGQKLALELGCL-FFEVSAAENYLEVQNVFHELCREV 164
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166 |
| >gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 57 PLSYPQTGLSMAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115
P+SY Q G +MAK++GA YLECSA T +K + ++F A ++LC P K+ V
Sbjct: 146 PISYEQ-GCAMAKQLGAEAYLECSAFTSEKSIHSIFRTA--SLLCINKLSPLAKKSPVRS 202
Query: 116 ICFSLVN-PASFENVRAKWYPEVRHHC 141
+ L++ P+ E + + + E C
Sbjct: 203 LSKRLLHLPSRSELISSTFKKEKAKSC 229
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.004
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 145 PIILVGTKLDLRDDKETIEKLKEK---KLAPITYPQGLSMAKEIGAVKYLECSALTQKGL 201
+++V K DL D++T E+ K++ KL + + + SALT +G+
Sbjct: 285 ALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDF------------APIVFISALTGQGV 332
Query: 202 KTVFDEAIRA 211
+ D
Sbjct: 333 DKLLDAIDEV 342
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 36.8 bits (85), Expect = 0.004
Identities = 47/218 (21%), Positives = 76/218 (34%), Gaps = 58/218 (26%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT ++ + FP EYIPT Y V++ G+ +L + D ++ Y
Sbjct: 11 VGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHI------LDVPNMQR--Y 62
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T E +GL+ F + + +
Sbjct: 63 PGTAGQ-----------EWMDPRFRGLRNS---------------------RAFILVYDI 90
Query: 121 VNPASFENVRA--KWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+P SF V+ + E R PI++VG K D + + AP
Sbjct: 91 CSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ----------QRHRFAP---RH 137
Query: 178 GLS-MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
LS + ++ YLECSA + +F E + +
Sbjct: 138 VLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT 175
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.004
Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 63/225 (28%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKT L+ + + F ++ TV + +S V G + + + DT+G + +R LS
Sbjct: 10 VGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQ 69
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
D F + +S+
Sbjct: 70 NG------------------------------------------------DAFALVYSVD 81
Query: 122 NPASFENVRA--KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+P SFE V+ + EV+ PI++VG K+D +++ + L
Sbjct: 82 DPESFEEVKRLREEILEVKED-KFVPIVVVGNKIDSLAERQ------------VEAADAL 128
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
S + ++E SA + + VF E ++ P P +R
Sbjct: 129 STVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRR 173
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| KOG0084|consensus | 205 | 100.0 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| KOG0092|consensus | 200 | 100.0 | ||
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| KOG0078|consensus | 207 | 100.0 | ||
| KOG0098|consensus | 216 | 100.0 | ||
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| KOG0393|consensus | 198 | 100.0 | ||
| KOG0094|consensus | 221 | 100.0 | ||
| KOG0079|consensus | 198 | 100.0 | ||
| KOG0080|consensus | 209 | 100.0 | ||
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 100.0 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0394|consensus | 210 | 100.0 | ||
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| KOG0093|consensus | 193 | 100.0 | ||
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.98 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| KOG0087|consensus | 222 | 99.97 | ||
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.97 | |
| KOG0086|consensus | 214 | 99.97 | ||
| KOG0091|consensus | 213 | 99.97 | ||
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.97 | |
| KOG0083|consensus | 192 | 99.97 | ||
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.97 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.96 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.96 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.96 | |
| KOG0095|consensus | 213 | 99.96 | ||
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.96 | |
| KOG0088|consensus | 218 | 99.96 | ||
| KOG0395|consensus | 196 | 99.96 | ||
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.96 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.96 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.96 | |
| KOG0081|consensus | 219 | 99.96 | ||
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.96 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.96 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.96 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.96 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.96 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.96 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.96 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.96 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.96 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.96 | |
| KOG0097|consensus | 215 | 99.96 | ||
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.96 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.96 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.96 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.95 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.95 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.95 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.95 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.95 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.95 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.95 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.95 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.95 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.95 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.95 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.95 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.95 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.95 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.94 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.94 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.94 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.94 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.94 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.94 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.94 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.94 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.93 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.93 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.93 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.93 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.93 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.93 | |
| PTZ00099 | 176 | rab6; Provisional | 99.93 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.92 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.92 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.92 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.92 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.92 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.92 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.92 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.91 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.91 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.91 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.91 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.9 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.9 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.9 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.9 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.88 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.88 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.88 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.88 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.87 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.87 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.87 | |
| KOG4252|consensus | 246 | 99.87 | ||
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.86 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.86 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.85 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.85 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.85 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.84 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.84 | |
| KOG0070|consensus | 181 | 99.82 | ||
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.81 | |
| KOG0073|consensus | 185 | 99.81 | ||
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.81 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.81 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.8 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.8 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.79 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.79 | |
| KOG3883|consensus | 198 | 99.79 | ||
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.77 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.77 | |
| KOG0075|consensus | 186 | 99.77 | ||
| KOG0096|consensus | 216 | 99.77 | ||
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.77 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.76 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.76 | |
| KOG1673|consensus | 205 | 99.75 | ||
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.75 | |
| KOG4423|consensus | 229 | 99.75 | ||
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.74 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.74 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.73 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.73 | |
| KOG0071|consensus | 180 | 99.73 | ||
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.73 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.72 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.72 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.72 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.71 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.71 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.7 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.7 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.7 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.69 | |
| KOG0072|consensus | 182 | 99.69 | ||
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.69 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.68 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.68 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.68 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.67 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.67 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.67 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.66 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.66 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.66 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.66 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.65 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.65 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.64 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.64 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.64 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.64 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.63 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.63 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.63 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.63 | |
| KOG0076|consensus | 197 | 99.61 | ||
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.6 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.6 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.6 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.6 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.59 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.58 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.56 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.54 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.53 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.51 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.49 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.49 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.49 | |
| KOG0074|consensus | 185 | 99.49 | ||
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.48 | |
| KOG1707|consensus | 625 | 99.48 | ||
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.47 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.47 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.46 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.46 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.43 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.43 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.41 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.41 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.4 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.4 | |
| KOG1423|consensus | 379 | 99.39 | ||
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.37 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.36 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.35 | |
| KOG1489|consensus | 366 | 99.35 | ||
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.34 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.33 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.33 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.31 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.3 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.29 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.27 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.27 | |
| KOG0462|consensus | 650 | 99.26 | ||
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.26 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.25 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.24 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.24 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.23 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.23 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.23 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.21 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.2 | |
| KOG0077|consensus | 193 | 99.18 | ||
| KOG1490|consensus | 620 | 99.16 | ||
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.16 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.16 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.15 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.15 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.15 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.14 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.14 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.14 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.1 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.09 | |
| KOG0090|consensus | 238 | 99.09 | ||
| KOG1707|consensus | 625 | 99.09 | ||
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.09 | |
| KOG1145|consensus | 683 | 99.07 | ||
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.06 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.06 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.05 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.05 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.04 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.04 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.04 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.01 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 98.97 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 98.97 | |
| KOG1191|consensus | 531 | 98.95 | ||
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 98.94 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 98.91 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.86 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.85 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.84 | |
| KOG0705|consensus | 749 | 98.84 | ||
| PRK12739 | 691 | elongation factor G; Reviewed | 98.82 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.77 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 98.76 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.75 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 98.75 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.72 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.71 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 98.7 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.7 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.7 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.68 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.67 | |
| KOG1532|consensus | 366 | 98.63 | ||
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 98.63 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.62 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.61 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.59 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 98.56 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.55 | |
| KOG3905|consensus | 473 | 98.53 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.51 | |
| PRK13768 | 253 | GTPase; Provisional | 98.5 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.48 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.45 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.43 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 98.38 | |
| KOG3886|consensus | 295 | 98.35 | ||
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.31 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.3 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 98.3 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.3 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 98.29 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 98.29 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.28 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.26 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 98.25 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 98.24 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 98.23 | |
| KOG1144|consensus | 1064 | 98.22 | ||
| KOG0461|consensus | 522 | 98.21 | ||
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 98.17 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 98.17 | |
| KOG1486|consensus | 364 | 98.15 | ||
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.11 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 98.11 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.08 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.08 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 98.04 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.01 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.01 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 98.0 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 97.97 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 97.94 | |
| KOG0458|consensus | 603 | 97.92 | ||
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.91 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.87 | |
| KOG2655|consensus | 366 | 97.84 | ||
| KOG0410|consensus | 410 | 97.84 | ||
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.81 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 97.78 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 97.78 | |
| KOG0468|consensus | 971 | 97.78 | ||
| KOG0082|consensus | 354 | 97.7 | ||
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 97.65 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 97.62 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 97.53 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 97.4 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 97.34 | |
| KOG1547|consensus | 336 | 97.31 | ||
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 97.3 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 97.23 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 97.2 | |
| KOG1954|consensus | 532 | 97.19 | ||
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 97.15 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.15 | |
| KOG1143|consensus | 591 | 97.14 | ||
| KOG0467|consensus | 887 | 97.11 | ||
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 97.1 | |
| KOG2486|consensus | 320 | 97.09 | ||
| KOG1491|consensus | 391 | 96.91 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 96.88 | |
| KOG3887|consensus | 347 | 96.88 | ||
| KOG1487|consensus | 358 | 96.79 | ||
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 96.74 | |
| KOG0460|consensus | 449 | 96.62 | ||
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 96.51 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 96.4 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 96.24 | |
| KOG4273|consensus | 418 | 96.19 | ||
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 96.19 | |
| KOG0465|consensus | 721 | 96.12 | ||
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 96.1 | |
| KOG0466|consensus | 466 | 96.02 | ||
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 95.95 | |
| KOG0448|consensus | 749 | 95.85 | ||
| cd03112 | 158 | CobW_like The function of this protein family is u | 95.81 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.79 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 95.79 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 95.59 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 95.57 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 95.43 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 95.29 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.28 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 95.2 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 95.08 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 94.97 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 94.74 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 94.68 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 94.51 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 94.47 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 94.4 | |
| KOG2743|consensus | 391 | 94.4 | ||
| PRK13796 | 365 | GTPase YqeH; Provisional | 94.38 | |
| KOG0099|consensus | 379 | 94.2 | ||
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 94.08 | |
| KOG0469|consensus | 842 | 93.87 | ||
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 93.78 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 93.25 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 93.15 | |
| PF11111 | 176 | CENP-M: Centromere protein M (CENP-M); InterPro: I | 93.13 | |
| KOG0085|consensus | 359 | 93.03 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 93.02 | |
| KOG1424|consensus | 562 | 93.0 | ||
| KOG1424|consensus | 562 | 92.91 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 92.81 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 92.69 | |
| KOG0464|consensus | 753 | 92.48 | ||
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.23 | |
| KOG0393|consensus | 198 | 92.17 | ||
| PRK13505 | 557 | formate--tetrahydrofolate ligase; Provisional | 92.15 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 92.05 | |
| PRK13695 | 174 | putative NTPase; Provisional | 91.96 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 91.88 | |
| KOG3929|consensus | 363 | 91.71 | ||
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.7 | |
| KOG0780|consensus | 483 | 91.61 | ||
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.49 | |
| KOG2423|consensus | 572 | 91.03 | ||
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 90.85 | |
| KOG2484|consensus | 435 | 90.47 | ||
| KOG1534|consensus | 273 | 89.9 | ||
| KOG0092|consensus | 200 | 88.57 | ||
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 88.42 | |
| KOG0098|consensus | 216 | 88.31 | ||
| KOG0463|consensus | 641 | 88.11 | ||
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 88.02 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 87.65 | |
| PF14331 | 266 | ImcF-related_N: ImcF-related N-terminal domain | 87.35 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 87.09 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 87.06 | |
| KOG3859|consensus | 406 | 86.89 | ||
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 86.66 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 86.53 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 86.21 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 85.72 | |
| KOG2484|consensus | 435 | 85.04 | ||
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 84.68 | |
| KOG0078|consensus | 207 | 84.32 | ||
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 84.05 | |
| KOG0744|consensus | 423 | 83.95 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 83.92 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 83.91 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 83.29 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 83.18 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 83.04 | |
| KOG2485|consensus | 335 | 82.48 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 82.23 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 82.16 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 82.14 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 81.6 | |
| KOG0097|consensus | 215 | 80.94 | ||
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 80.71 | |
| COG2759 | 554 | MIS1 Formyltetrahydrofolate synthetase [Nucleotide | 80.68 |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=244.05 Aligned_cols=179 Identities=70% Similarity=1.152 Sum_probs=156.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|.+.|.||+++.+...+.+++..+.+.+|||+|++.|+.+++.+++++
T Consensus 13 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a----------------- 75 (191)
T cd01875 13 AVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT----------------- 75 (191)
T ss_pred CCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC-----------------
Confidence 799999999999999999999999988877778899999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||++++.||+.+.+.|...+.+..+++|++|||||+||.+...
T Consensus 76 -------------------------------~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~ 124 (191)
T cd01875 76 -------------------------------NVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD 124 (191)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh
Confidence 9999999999999999997569888887777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
..+.......+.++.+++..+++.+++.+|+|+||++|.||+++|.++++.++.+.+.. ++++|.||
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~~~-~~~~c~~~ 191 (191)
T cd01875 125 TLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK-DTKSCVLL 191 (191)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccccc-CCCCceeC
Confidence 34443344456788899999999999668999999999999999999999999876533 44569876
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=240.38 Aligned_cols=156 Identities=29% Similarity=0.551 Sum_probs=146.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||..+.|.+.|..|++.++. +++.++|+.++++||||+||++|+.+..+||+++
T Consensus 19 ~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a---------------- 82 (205)
T KOG0084|consen 19 GVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 82 (205)
T ss_pred CcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC----------------
Confidence 79999999999999999999999988885 7899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+|||+|+.+||..+. .|+.++.++. +++|.+|||||+|+.+.
T Consensus 83 --------------------------------hGii~vyDiT~~~SF~~v~-~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 83 --------------------------------HGIIFVYDITKQESFNNVK-RWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred --------------------------------CeEEEEEEcccHHHhhhHH-HHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 9999999999999999999 9999999997 56899999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.++++.|+.++++..|+|+||+++.||+++|..+...++..+.
T Consensus 130 ------------~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 130 ------------RVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred ------------eecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcc
Confidence 88999999999999996449999999999999999999998876543
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=229.97 Aligned_cols=180 Identities=47% Similarity=0.845 Sum_probs=158.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.||+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a----------------- 72 (189)
T cd04134 10 ACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADT----------------- 72 (189)
T ss_pred CCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCC-----------------
Confidence 799999999999999999999999888877777888889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++++|||+++++||+.+...|+..+....++.|++|||||+|+.+..+
T Consensus 73 -------------------------------~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 73 -------------------------------DVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 9999999999999999987579999988777899999999999987654
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
..+.......+.++.+++..+++..+..+|+|+||++|.||+++|.++++.++.+++..+.++.|.||
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~ 189 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHPHSSACTIA 189 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccccCcCCCcceeC
Confidence 33333333334678889999999888668999999999999999999999999999888889999886
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=230.59 Aligned_cols=166 Identities=43% Similarity=0.856 Sum_probs=147.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||+++.+.+.+.+++..+.+.+|||+|++.|..+++.+++++
T Consensus 15 ~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~a----------------- 77 (182)
T cd04172 15 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 77 (182)
T ss_pred CCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCC-----------------
Confidence 799999999999999999999999988888888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.||+.+...|+..+....++.|++|||||+||.+...
T Consensus 78 -------------------------------d~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 126 (182)
T cd04172 78 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT 126 (182)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh
Confidence 9999999999999999984499999998888899999999999975433
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~ 214 (228)
........+.+.++.+++..+++.+++.+|+||||++|.| |+++|..+++.++.
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 2222223334679999999999999976899999999998 99999999997654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=226.19 Aligned_cols=156 Identities=28% Similarity=0.575 Sum_probs=144.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||+.+.|.+...||++..| .+++.+++..++++||||+||++|.++.+.||+++
T Consensus 15 ~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA---------------- 78 (200)
T KOG0092|consen 15 GVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGA---------------- 78 (200)
T ss_pred CCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCC----------------
Confidence 7999999999999999988899997666 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++|+|||+|+.+||..+. .|..+|++.-+ ++-+.|||||+||.+.
T Consensus 79 --------------------------------~AAivvYDit~~~SF~~aK-~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 79 --------------------------------NAAIVVYDITDEESFEKAK-NWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred --------------------------------cEEEEEEecccHHHHHHHH-HHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 9999999999999999999 99999998864 5667789999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
|.+..+++..+++..| ..|+|+||++|.||+++|..+.+.+....+.
T Consensus 126 ------------R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 126 ------------REVEFEEAQAYAESQG-LLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ------------ccccHHHHHHHHHhcC-CEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 7799999999999999 5899999999999999999999999876543
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=226.59 Aligned_cols=165 Identities=43% Similarity=0.856 Sum_probs=145.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.|.||+++.+.+.+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a----------------- 73 (178)
T cd04131 11 QCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDS----------------- 73 (178)
T ss_pred CCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCC-----------------
Confidence 799999999999999999999999888888888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|+..+.+++++.|++|||||+||.+...
T Consensus 74 -------------------------------~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~ 122 (178)
T cd04131 74 -------------------------------DAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS 122 (178)
T ss_pred -------------------------------CEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh
Confidence 9999999999999999974499999998888899999999999975333
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~ 213 (228)
........+.+.++.+++..+++.+++.+|+|+||++|.| |+++|..+++..+
T Consensus 123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 123 TLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 2222222334679999999999999976899999999995 9999999999765
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=230.03 Aligned_cols=155 Identities=32% Similarity=0.616 Sum_probs=146.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.+|..+.|...+..|++.++. +++.+++..+.+++|||+||+++..+..+||+++
T Consensus 22 ~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA---------------- 85 (207)
T KOG0078|consen 22 GVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA---------------- 85 (207)
T ss_pred CCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc----------------
Confidence 79999999999999999999999987775 7889999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++++|||+|+..||+++. .|+..+.++.+ .+|++|||||+|+...
T Consensus 86 --------------------------------~gi~LvyDitne~Sfeni~-~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 86 --------------------------------MGILLVYDITNEKSFENIR-NWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred --------------------------------CeeEEEEEccchHHHHHHH-HHHHHHHhhCCCCCcEEEeecccccccc
Confidence 9999999999999999999 79999999875 8999999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.|+.+.++++|.++| ++|+|+||++|.||+++|..+.+.++.+.+
T Consensus 133 ------------R~V~~e~ge~lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 133 ------------RQVSKERGEALAREYG-IKFFETSAKTNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred ------------ccccHHHHHHHHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhhcc
Confidence 7899999999999999 699999999999999999999999985443
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=226.51 Aligned_cols=155 Identities=28% Similarity=0.521 Sum_probs=145.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||+|+.||+.+.|.+.+..|++..|. ..+.+|+++++++||||+|++.|+++..+||+++
T Consensus 16 gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a---------------- 79 (216)
T KOG0098|consen 16 GVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGA---------------- 79 (216)
T ss_pred CccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccC----------------
Confidence 79999999999999999999999988885 5689999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
-++|+|||+|.++||.++. .|+..++++. ++.-++|+|||+||...
T Consensus 80 --------------------------------~GalLVydit~r~sF~hL~-~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 80 --------------------------------AGALLVYDITRRESFNHLT-SWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred --------------------------------cceEEEEEccchhhHHHHH-HHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 9999999999999999998 9999999985 78899999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.|+.+|++.||+++| ..|+|+||++++||+++|......|+...+
T Consensus 127 ------------R~Vs~EEGeaFA~ehg-LifmETSakt~~~VEEaF~nta~~Iy~~~q 172 (216)
T KOG0098|consen 127 ------------REVSKEEGEAFAREHG-LIFMETSAKTAENVEEAFINTAKEIYRKIQ 172 (216)
T ss_pred ------------ccccHHHHHHHHHHcC-ceeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7799999999999999 579999999999999999999998876544
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=232.78 Aligned_cols=169 Identities=41% Similarity=0.829 Sum_probs=150.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||+++.|...+.+++..+.+.+|||+|++.|..+++.+|+++
T Consensus 11 ~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~----------------- 73 (222)
T cd04173 11 ECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDS----------------- 73 (222)
T ss_pred CCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCC-----------------
Confidence 799999999999999999999999988888889999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|...+....++.|++|||||+||.....
T Consensus 74 -------------------------------d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~ 122 (222)
T cd04173 74 -------------------------------DAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLA 122 (222)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchh
Confidence 9999999999999999997689988888778899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~~~~ 217 (228)
............++.+++..++++.|+.+|+||||+++.+ |+++|..++.+.+.+.+
T Consensus 123 ~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 123 TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 4444444444578999999999999977999999999985 99999999998876433
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=233.95 Aligned_cols=167 Identities=40% Similarity=0.789 Sum_probs=146.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.|.||++..|...+.+++..+.+.+|||+|++.|..+++.+|+++
T Consensus 23 ~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a----------------- 85 (232)
T cd04174 23 QCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS----------------- 85 (232)
T ss_pred CCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC-----------------
Confidence 799999999999999999999999888887888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+...|+..+....++.|++|||||+||.+...
T Consensus 86 -------------------------------d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 134 (232)
T cd04174 86 -------------------------------DAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLS 134 (232)
T ss_pred -------------------------------cEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc
Confidence 9999999999999999864499999998878899999999999965322
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~~ 215 (228)
..........+.++.++++.+++.+++..|+||||++|. ||+++|..++..+++.
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 222222223467999999999999996579999999998 8999999999987764
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=223.60 Aligned_cols=164 Identities=63% Similarity=1.058 Sum_probs=143.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|..+|.||+++.+...+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (176)
T cd04133 11 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA----------------- 73 (176)
T ss_pred CCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCC-----------------
Confidence 799999999999999999999999988887788899999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++|+|||+++++||+.+.+.|+..+....++.|++|||||+||.+...
T Consensus 74 -------------------------------~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (176)
T cd04133 74 -------------------------------DVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQ 122 (176)
T ss_pred -------------------------------cEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChh
Confidence 9999999999999999984489999988777899999999999975421
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ......+.++.+++..+++.+++.+|+|+||++|.||+++|..+++.+++
T Consensus 123 ~~--~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 123 YL--ADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred hh--hhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 00 00111245889999999999996579999999999999999999998754
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=225.19 Aligned_cols=169 Identities=79% Similarity=1.309 Sum_probs=161.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
++|||+|+..|..+.|++.|.||+.++|+..+.++ |+.+.+.+|||+||+.|..+++..|.++
T Consensus 14 a~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~t---------------- 77 (198)
T KOG0393|consen 14 AVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQT---------------- 77 (198)
T ss_pred CcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCC----------------
Confidence 58999999999999999999999999999999995 9999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|+|+++|++.+++||+++.++|+.+++++++++|+||||+|.||.+..
T Consensus 78 --------------------------------dvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~ 125 (198)
T KOG0393|consen 78 --------------------------------DVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDP 125 (198)
T ss_pred --------------------------------CEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCH
Confidence 999999999999999999999999999999999999999999999777
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...+.+.......++.+++..++++.|...|+|+||++..|++++|+.+++..+.+.+
T Consensus 126 ~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 126 STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 7777888778899999999999999999999999999999999999999999998765
|
|
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=221.81 Aligned_cols=153 Identities=32% Similarity=0.537 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+|||||||+||+.+.|...|.+|+|.++ ++++.+.+..+.+++|||+||++|+.+.+.|++++
T Consensus 32 sVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds---------------- 95 (221)
T KOG0094|consen 32 SVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 95 (221)
T ss_pred ccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC----------------
Confidence 6999999999999999999999998776 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~ 157 (228)
.++|+|||++|..||++.. +|++.+++.+. ++-|+|||||.||.+
T Consensus 96 --------------------------------~vaviVyDit~~~Sfe~t~-kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 96 --------------------------------SVAVIVYDITDRNSFENTS-KWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred --------------------------------eEEEEEEeccccchHHHHH-HHHHHHHhccCCCceEEEEEcccccccc
Confidence 9999999999999999998 99999999874 367789999999999
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. |.++.+++.+.+++++. .|.++||+.|.||.++|..+...+...
T Consensus 143 k------------rqvs~eEg~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 143 K------------RQVSIEEGERKAKELNA-EFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred h------------hhhhHHHHHHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCc
Confidence 7 67999999999999994 899999999999999999988877654
|
|
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=215.63 Aligned_cols=154 Identities=30% Similarity=0.590 Sum_probs=146.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||+|+.+|..+.|.+.|..|++.++. +++.++|..++++|||++|++.|+.+...+|++.
T Consensus 18 gVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgt---------------- 81 (198)
T KOG0079|consen 18 GVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGT---------------- 81 (198)
T ss_pred cccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCC----------------
Confidence 79999999999999999999999987775 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+|+.+||.++. .|++++++.++.+|-+|||||.|+...
T Consensus 82 --------------------------------hgv~vVYDVTn~ESF~Nv~-rWLeei~~ncdsv~~vLVGNK~d~~~R- 127 (198)
T KOG0079|consen 82 --------------------------------HGVIVVYDVTNGESFNNVK-RWLEEIRNNCDSVPKVLVGNKNDDPER- 127 (198)
T ss_pred --------------------------------ceEEEEEECcchhhhHhHH-HHHHHHHhcCccccceecccCCCCccc-
Confidence 9999999999999999999 999999999999999999999999885
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++.+|+...| +.+||+||+.++|++..|+-+.+++++.+
T Consensus 128 -----------rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 128 -----------RVVDTEDARAFALQMG-IELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred -----------eeeehHHHHHHHHhcC-chheehhhhhcccchHHHHHHHHHHHHHH
Confidence 8899999999999999 69999999999999999999998887643
|
|
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=215.83 Aligned_cols=152 Identities=27% Similarity=0.527 Sum_probs=142.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.||+.+.|.+....|++.++. +.+.++|+.+++-||||+||++|+.+.++||+++
T Consensus 21 GVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRga---------------- 84 (209)
T KOG0080|consen 21 GVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGA---------------- 84 (209)
T ss_pred CccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccC----------------
Confidence 89999999999999999888888988885 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~ 157 (228)
.++|+|||+|.+++|..+. .|+.++.-|+. ++-.++||||+|...
T Consensus 85 --------------------------------qGiIlVYDVT~Rdtf~kLd-~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 85 --------------------------------QGIILVYDVTSRDTFVKLD-IWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred --------------------------------ceeEEEEEccchhhHHhHH-HHHHHHHhhcCCccHhHhhhcccccchh
Confidence 9999999999999999996 99999999874 566789999999776
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. |.++.+++.+|+++++| -|+|+||++.+||+.+|++++++|++
T Consensus 132 ~------------R~V~reEG~kfAr~h~~-LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 132 E------------RVVDREEGLKFARKHRC-LFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred c------------ccccHHHHHHHHHhhCc-EEEEcchhhhccHHHHHHHHHHHHhc
Confidence 4 78999999999999996 79999999999999999999999986
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=219.62 Aligned_cols=165 Identities=71% Similarity=1.199 Sum_probs=146.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...|.||+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (175)
T cd01874 11 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT----------------- 73 (175)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccC-----------------
Confidence 799999999999999999999999988887788889999999999999999999998889888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+....+++|++|||||+|+.+...
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (175)
T cd01874 74 -------------------------------DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 122 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh
Confidence 9999999999999999997569999988777899999999999976655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++..++..|+|+||++|.||+++|+.++..++
T Consensus 123 ~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~~ 175 (175)
T cd01874 123 TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175 (175)
T ss_pred hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 55555444457899999999999988668999999999999999999998653
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=222.78 Aligned_cols=155 Identities=26% Similarity=0.448 Sum_probs=140.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...+.++++..+ ...+.+++..+.+.+||++|++.|..+++.+++++
T Consensus 16 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~a---------------- 79 (189)
T cd04121 16 DVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGA---------------- 79 (189)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888886655 45678899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||++++.||+.+. .|++.+..+.++.|++|||||+||.+.
T Consensus 80 --------------------------------d~illVfD~t~~~Sf~~~~-~w~~~i~~~~~~~piilVGNK~DL~~~- 125 (189)
T cd04121 80 --------------------------------QGIILVYDITNRWSFDGID-RWIKEIDEHAPGVPKILVGNRLHLAFK- 125 (189)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccchhc-
Confidence 9999999999999999998 999999887788999999999999764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.++++.+++.+++ +|+|+||++|.||+++|+++++.+..++.
T Consensus 126 -----------~~v~~~~~~~~a~~~~~-~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 126 -----------RQVATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred -----------cCCCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 56889999999999995 89999999999999999999998875544
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=216.95 Aligned_cols=163 Identities=96% Similarity=1.503 Sum_probs=145.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+.+|+.+.|.+.|.||+++.+...+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 11 ~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (174)
T cd01871 11 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 73 (174)
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCC-----------------
Confidence 799999999999999999999999888877888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|+..+....++.|++|||||+|+.+...
T Consensus 74 -------------------------------d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 122 (174)
T cd01871 74 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 122 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh
Confidence 9999999999999999996579988887777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..+.......+.++.+++..+++++++.+|+|+||++|.|++++|+.++..
T Consensus 123 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 123 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 444444445578999999999999996699999999999999999999864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=213.09 Aligned_cols=166 Identities=75% Similarity=1.282 Sum_probs=149.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.+++.+.+...+.+++..+.+.+|||+|++.+..+++.++.++
T Consensus 8 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 70 (174)
T smart00174 8 AVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDT----------------- 70 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCC-----------------
Confidence 799999999999999999999999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+..+.++.|++|||||+|+.....
T Consensus 71 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 119 (174)
T smart00174 71 -------------------------------DVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKS 119 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChh
Confidence 9999999999999999997679999988878899999999999987555
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+.+++.+++
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 455555555677899999999999997689999999999999999999998875
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=221.95 Aligned_cols=153 Identities=27% Similarity=0.507 Sum_probs=138.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...|.+|++..+ .+.+.+++..+.+.+||++|++.|+.++..+++++
T Consensus 10 gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~a---------------- 73 (202)
T cd04120 10 GVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA---------------- 73 (202)
T ss_pred CCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCC----------------
Confidence 7999999999999999999999997655 46788899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||+++++||+.+. .|+..+.+.. .+.|++|||||+|+.+.
T Consensus 74 --------------------------------d~iIlVfDvtd~~Sf~~l~-~w~~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 74 --------------------------------KGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8999888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+ + ..|+|+||++|.||+++|.+++..+...
T Consensus 121 ------------~~v~~~~~~~~a~~~~~-~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 121 ------------REISRQQGEKFAQQITG-MRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred ------------cccCHHHHHHHHHhcCC-CEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 568888999999886 6 5899999999999999999999988653
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=214.48 Aligned_cols=157 Identities=29% Similarity=0.557 Sum_probs=145.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...|..|++..+ .+.+.+|+..++++||||+||++|.++...+|+++
T Consensus 19 GVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRga---------------- 82 (210)
T KOG0394|consen 19 GVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGA---------------- 82 (210)
T ss_pred CccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCC----------------
Confidence 8999999999999999999999997666 68899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-----CCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-----STPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-----~~piilv~nK~D 154 (228)
|.+++|||+++++||+.+. .|-.++..+.+ ..|.||+|||+|
T Consensus 83 --------------------------------DcCvlvydv~~~~Sfe~L~-~Wr~EFl~qa~~~~Pe~FPFVilGNKiD 129 (210)
T KOG0394|consen 83 --------------------------------DCCVLVYDVNNPKSFENLE-NWRKEFLIQASPQDPETFPFVILGNKID 129 (210)
T ss_pred --------------------------------ceEEEEeecCChhhhccHH-HHHHHHHHhcCCCCCCcccEEEEccccc
Confidence 9999999999999999998 99999887642 469999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+...++ |.++...++.||...|-+||||+|||.+.||+++|+.+.+.++...
T Consensus 130 ~~~~~~----------r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 130 VDGGKS----------RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred CCCCcc----------ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 987543 8899999999999999899999999999999999999999887644
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=218.19 Aligned_cols=166 Identities=32% Similarity=0.555 Sum_probs=143.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.+|+++.+...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 9 ~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 71 (190)
T cd04144 9 GVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREG----------------- 71 (190)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhC-----------------
Confidence 799999999999999998999999888877778899989999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
|++|+|||+++++||+.+. .|+..+.... .+.|++|||||+|+.
T Consensus 72 -------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 72 -------------------------------EGFILVYSITSRSTFERVE-RFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999999998 8988887653 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC------------CCCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT------------VPKKKR 224 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~------------~~~~~~ 224 (228)
.. +.++..++..+++.+++ +++++||++|.||+++|.++++.+..+++. .+++++
T Consensus 120 ~~------------~~v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (190)
T cd04144 120 YE------------REVSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRK 186 (190)
T ss_pred cc------------CccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccC
Confidence 64 45777788889998994 899999999999999999999988754332 344456
Q ss_pred cccC
Q psy8274 225 CVLL 228 (228)
Q Consensus 225 ~~~~ 228 (228)
|+||
T Consensus 187 ~~~~ 190 (190)
T cd04144 187 CVIM 190 (190)
T ss_pred ceeC
Confidence 8875
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=206.06 Aligned_cols=157 Identities=28% Similarity=0.545 Sum_probs=143.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
.||||||+.||....|...+..|++..+. +++--..+.+.+++|||+|++.|+.+...+|+++
T Consensus 31 svGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga---------------- 94 (193)
T KOG0093|consen 31 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA---------------- 94 (193)
T ss_pred CccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc----------------
Confidence 48999999999999999999999988876 3444466789999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++|++||+||.+||..+. .|...|++++ ++.|+||||||||+.++
T Consensus 95 --------------------------------mgfiLmyDitNeeSf~svq-dw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 95 --------------------------------MGFILMYDITNEESFNSVQ-DWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred --------------------------------ceEEEEEecCCHHHHHHHH-HHHHHheeeeccCceEEEEecccCCccc
Confidence 9999999999999999998 9999999998 68999999999999987
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
|.++.+.+..++..+| ..|||+||+.+.||+++|+.+...|-.....+
T Consensus 142 ------------Rvis~e~g~~l~~~LG-fefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 142 ------------RVISHERGRQLADQLG-FEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred ------------eeeeHHHHHHHHHHhC-hHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999999 49999999999999999999999887655443
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=213.83 Aligned_cols=172 Identities=55% Similarity=0.959 Sum_probs=147.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+...+..+ +..+.+.+|||+|++.+..+++.++.++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---------------- 73 (187)
T cd04132 10 GCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDV---------------- 73 (187)
T ss_pred CCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCC----------------
Confidence 79999999999999999999999988877666665 7789999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||+++++||+.+.+.|+..+.+..++.|+++||||+|+....
T Consensus 74 --------------------------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 74 --------------------------------DVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 999999999999999999757998888777789999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC-----CCCCCCCcccC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP-----TVPKKKRCVLL 228 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~-----~~~~~~~~~~~ 228 (228)
+ ..+.++.+++..+++.+++.+++++||++|.||+++|..+++.++.... +.+++++|++|
T Consensus 122 ~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 122 N--------LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred c--------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 1 0145778889999999996689999999999999999999999987643 34556779876
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=208.81 Aligned_cols=153 Identities=26% Similarity=0.498 Sum_probs=139.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.||+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 12 ~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~----------------- 74 (172)
T cd04141 12 GVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCG----------------- 74 (172)
T ss_pred CCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcC-----------------
Confidence 799999999999999998999999888887888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|...+.+.. +++|++|||||+|+.+.
T Consensus 75 -------------------------------d~~ilv~d~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 75 -------------------------------EGFIICYSVTDRHSFQEAS-EFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred -------------------------------CEEEEEEECCchhHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 9999999999999999998 7888887643 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|++++..+...
T Consensus 123 ------------~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 123 ------------RQVTTEEGRNLAREFNC-PFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred ------------CccCHHHHHHHHHHhCC-EEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 56888899999999995 899999999999999999999988753
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=202.63 Aligned_cols=163 Identities=58% Similarity=1.015 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|..++.+|..+.+...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a----------------- 72 (173)
T cd04130 10 AVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDT----------------- 72 (173)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCC-----------------
Confidence 799999999999999999999999888888888899899999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|+..+....++.|+++||||+|+.....
T Consensus 73 -------------------------------~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 121 (173)
T cd04130 73 -------------------------------DVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN 121 (173)
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh
Confidence 9999999999999999986579988887666799999999999976543
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..........+.+..+++..+++..++.+|+|+||++|.||+++|+.++.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 172 (173)
T cd04130 122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAILA 172 (173)
T ss_pred HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHhh
Confidence 333333344578899999999999997699999999999999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=208.81 Aligned_cols=152 Identities=32% Similarity=0.541 Sum_probs=143.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||=|+.||..+.|.-+..+|++..+. ..+.++++.++.+||||+||++|+.+...||+++
T Consensus 24 ~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA---------------- 87 (222)
T KOG0087|consen 24 AVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA---------------- 87 (222)
T ss_pred ccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc----------------
Confidence 79999999999999999999999987774 6789999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.++++|||+|.+.+|+++. .|+.+|+.+. ++++++|||||+||.+.
T Consensus 88 --------------------------------vGAllVYDITr~~Tfenv~-rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 88 --------------------------------VGALLVYDITRRQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred --------------------------------ceeEEEEechhHHHHHHHH-HHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 9999999999999999998 9999999988 57999999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|.+..+++..+++..+ ..|+|+||+.+.||+++|..++..|.+
T Consensus 135 ------------raV~te~~k~~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 135 ------------RAVPTEDGKAFAEKEG-LFFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred ------------cccchhhhHhHHHhcC-ceEEEecccccccHHHHHHHHHHHHHH
Confidence 7899999999999999 699999999999999999999988864
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=201.45 Aligned_cols=165 Identities=66% Similarity=1.106 Sum_probs=146.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.+|+.+.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 72 (174)
T cd04135 10 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT----------------- 72 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCC-----------------
Confidence 799999999999999998899999888877888899899999999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|+.+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 73 -------------------------------~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 73 -------------------------------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 9999999999999999997679888887767899999999999976554
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..........+.++.+++..+++..++.+|+++||++|.||+++|+.+++.++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHhC
Confidence 44444455556888999999999999878999999999999999999998764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=207.02 Aligned_cols=166 Identities=30% Similarity=0.505 Sum_probs=143.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|...+.||++..+.+.+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus 15 ~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~----------------- 77 (189)
T PTZ00369 15 GVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 77 (189)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcC-----------------
Confidence 799999999999999988999999888888888999999999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.+.. ++.|+++|+||+|+...
T Consensus 78 -------------------------------d~iilv~D~s~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 78 -------------------------------QGFLCVYSITSRSSFEEIA-SFREQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8988887654 47899999999998654
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC-------CCCCCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT-------VPKKKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~-------~~~~~~~~~~ 228 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.++++.+....++ +++++.|+++
T Consensus 126 ------------~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 126 ------------RQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred ------------cccCHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 4577778888888888 4899999999999999999999888765332 3334458765
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=206.86 Aligned_cols=151 Identities=25% Similarity=0.457 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...|.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 5 ~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~a---------------- 68 (200)
T smart00176 5 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQG---------------- 68 (200)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCC----------------
Confidence 7999999999999999989999997555 56678889999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++|+|||++++.||..+. .|+..+.+.++++|++|||||+|+..
T Consensus 69 --------------------------------d~~ilV~D~t~~~S~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~-- 113 (200)
T smart00176 69 --------------------------------QCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKD-- 113 (200)
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCEEEEEECccccc--
Confidence 9999999999999999998 89999998877899999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..++ ..+++..+ ..|+|+||++|.||+++|.+++..+...
T Consensus 114 -----------~~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 114 -----------RKVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred -----------ccCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 2244433 46777778 4899999999999999999999988754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=205.40 Aligned_cols=153 Identities=29% Similarity=0.550 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 16 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a---------------- 79 (199)
T cd04110 16 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGT---------------- 79 (199)
T ss_pred CCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCC----------------
Confidence 7999999999999999888999997555 46677788889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+++++||..+. .|+..+....+..|++|||||+|+...
T Consensus 80 --------------------------------~~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~piivVgNK~Dl~~~- 125 (199)
T cd04110 80 --------------------------------HGVIVVYDVTNGESFVNVK-RWLQEIEQNCDDVCKVLVGNKNDDPER- 125 (199)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccccc-
Confidence 9999999999999999998 899999887778999999999999764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|.||+++|+++.+.++..
T Consensus 126 -----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 126 -----------KVVETEDAYKFAGQMG-ISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred -----------cccCHHHHHHHHHHcC-CEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 4567788889999888 5899999999999999999999988764
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=206.25 Aligned_cols=155 Identities=25% Similarity=0.410 Sum_probs=137.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.||++..+ ...+.++ +..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a--------------- 74 (201)
T cd04107 10 GVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA--------------- 74 (201)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC---------------
Confidence 7999999999999999999999997655 4566777 8889999999999999999999899988
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~ 153 (228)
+++++|||+++++||+.+. .|+..+.... .++|++|||||+
T Consensus 75 ---------------------------------~~~ilv~D~t~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~NK~ 120 (201)
T cd04107 75 ---------------------------------VGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPCLLLANKC 120 (201)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccCCCCCcEEEEEECC
Confidence 9999999999999999997 9988887531 468999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+.+. +.++.+++..+++.+++.+++++||++|.||+++|+++++.+....
T Consensus 121 Dl~~~------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 121 DLKKR------------LAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred Ccccc------------cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99753 4578889999999999668999999999999999999999887643
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=197.88 Aligned_cols=150 Identities=28% Similarity=0.543 Sum_probs=134.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.||+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (163)
T cd04136 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNG----------------- 73 (163)
T ss_pred CCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcC-----------------
Confidence 799999999999999998999999877778888899999999999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 74 -------------------------------QGFVLVYSITSQSSFNDLQ-DLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8888887653 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||++|.|++++|.++++.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 ------------RVVSREEGQALARQWG-CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ------------ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 4467777888888888 6999999999999999999998865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=196.58 Aligned_cols=155 Identities=29% Similarity=0.511 Sum_probs=143.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|.|||||+.+|+.++|.++...|++..+ ++.+.+.++.++++||||+||++|+++...||+++
T Consensus 19 GtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA---------------- 82 (214)
T KOG0086|consen 19 GTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA---------------- 82 (214)
T ss_pred CCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc----------------
Confidence 7899999999999999999999998887 46678899999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
-+.++|||+|+++||..+. .|+..++... +++-++|+|||.||...
T Consensus 83 --------------------------------AGAlLVYD~TsrdsfnaLt-nWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 83 --------------------------------AGALLVYDITSRDSFNALT-NWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred --------------------------------cceEEEEeccchhhHHHHH-HHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 9999999999999999999 9999998775 46778899999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.++..++.+|+.+... -++|+||++|+||++.|-...+.|+...+
T Consensus 130 ------------R~VtflEAs~FaqEnel-~flETSa~TGeNVEEaFl~c~~tIl~kIE 175 (214)
T KOG0086|consen 130 ------------REVTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILNKIE 175 (214)
T ss_pred ------------hhhhHHHHHhhhcccce-eeeeecccccccHHHHHHHHHHHHHHHHh
Confidence 67999999999999984 89999999999999999999999886543
|
|
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=199.62 Aligned_cols=151 Identities=29% Similarity=0.463 Sum_probs=136.0
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
||||||++.|+.+.|.+-..||++.++. ..+++ +|..+++++|||+||++|+++..+||++.
T Consensus 19 vgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns---------------- 82 (213)
T KOG0091|consen 19 VGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS---------------- 82 (213)
T ss_pred ccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc----------------
Confidence 8999999999999999999999976664 44555 78899999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCE-EEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPI-ILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pi-ilv~nK~Dl~ 156 (228)
-++++|||+||++||+++. .|+.+...+- +..+| .|||+|+||.
T Consensus 83 --------------------------------vgvllvyditnr~sfehv~-~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 83 --------------------------------VGVLLVYDITNRESFEHVE-NWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred --------------------------------cceEEEEeccchhhHHHHH-HHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 9999999999999999999 9998877664 45555 4999999999
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. |+|+.+|++.++..+| ..|+|+||++|.||++.|+.+.+.|..
T Consensus 130 Sq------------RqVt~EEaEklAa~hg-M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 130 SQ------------RQVTAEEAEKLAASHG-MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred hh------------ccccHHHHHHHHHhcC-ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 75 8899999999999999 589999999999999999999988764
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=203.74 Aligned_cols=160 Identities=44% Similarity=0.740 Sum_probs=126.1
Q ss_pred CCChhhhHH-hhhhC-----CCCCCCCceee--ecccee--------EEEcCeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLI-SYTTN-----AFPGEYIPTVF--DNYSAN--------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|||||||+. ++.++ .|...|.||++ +.|... ..+++..+.+.+|||+|++. .+++.+++++
T Consensus 12 ~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~a- 88 (195)
T cd01873 12 AVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRS- 88 (195)
T ss_pred CcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCC-
Confidence 799999995 66544 35667889985 444322 25789999999999999975 3456677777
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|++++|||++++.||+.+.+.|+..+....++.
T Consensus 89 -----------------------------------------------d~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~ 121 (195)
T cd01873 89 -----------------------------------------------DVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV 121 (195)
T ss_pred -----------------------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999756999998877789
Q ss_pred CEEEEEeCCCCCCchHHHHH-------HhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEK-------LKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
|++|||||+||.+....... ......+.++.+++..+++.+|+ +|+||||++|.||+++|+.++++
T Consensus 122 piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 122 PVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 99999999999752110000 00011377999999999999996 99999999999999999999874
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=198.42 Aligned_cols=152 Identities=29% Similarity=0.558 Sum_probs=135.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 75 (166)
T cd04122 12 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 75 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 79999999999999999888889876664 5677889899999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.... ++.|+++||||+|+...
T Consensus 76 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 76 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 9998887654 57899999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.+++..+.+
T Consensus 123 ------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 123 ------------RDVTYEEAKQFADENG-LLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ------------cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578889999999998 489999999999999999999988754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=194.07 Aligned_cols=156 Identities=29% Similarity=0.527 Sum_probs=142.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
++|||||+-||..+.|. +...+|++.+|. +.+.++++++++++|||+||++|+++...||+++
T Consensus 7 ~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda--------------- 71 (192)
T KOG0083|consen 7 CTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDA--------------- 71 (192)
T ss_pred ccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccc---------------
Confidence 58999999999988884 678899988785 6678899999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
|+.+++||++|..||+++. .|+.+|+++. ..+.++++|||+|+..
T Consensus 72 ---------------------------------~allllydiankasfdn~~-~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 72 ---------------------------------DALLLLYDIANKASFDNCQ-AWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred ---------------------------------ceeeeeeecccchhHHHHH-HHHHHHHHHHHhhHhHhhhccccccch
Confidence 9999999999999999998 9999999986 4688999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+ |.+..+++.++++.+| +||.|+||++|.||+..|..+.+.+++.+-.
T Consensus 118 e------------r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 118 E------------RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred h------------hccccchHHHHHHHHC-CCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 5 7899999999999999 6999999999999999999999998876543
|
|
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=196.26 Aligned_cols=164 Identities=57% Similarity=1.032 Sum_probs=142.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|.+.+.||+++.+...+.+++..+.+.+|||+|++.+..++...+.++
T Consensus 11 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (175)
T cd01870 11 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 73 (175)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCC-----------------
Confidence 799999999999999998999999887777788899999999999999999988887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|+.+.+.|+..+.+..++.|+++|+||+|+.....
T Consensus 74 -------------------------------d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 122 (175)
T cd01870 74 -------------------------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh
Confidence 9999999999999999997679988888777899999999999976544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+.......+.+...++..+++.++..++++|||++|.||+++|.++.+.+
T Consensus 123 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 123 TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 4444444444677888999999998877899999999999999999998765
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=197.30 Aligned_cols=151 Identities=29% Similarity=0.528 Sum_probs=135.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|...+.||+++.+...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (164)
T cd04175 11 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNG----------------- 73 (164)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhC-----------------
Confidence 799999999999999988899999888888888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. +|+..+.... .+.|++||+||+|+...
T Consensus 74 -------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 74 -------------------------------QGFVLVYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 9999999999999999998 8888887643 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|.++++.+-
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 122 ------------RVVGKEQGQNLARQWG-CAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred ------------cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 4567777888888888 48999999999999999999998664
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=197.21 Aligned_cols=151 Identities=44% Similarity=0.813 Sum_probs=140.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|+ .+.+...+.+++..+.+++||++|++.+..++...+.++
T Consensus 9 ~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 72 (162)
T PF00071_consen 9 GVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNS---------------- 72 (162)
T ss_dssp TSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTE----------------
T ss_pred CCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 799999999999999999999999 566678889999999999999999998887777778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++|+|||+++++||+.+. .|+..+....+ +.|++|||||.|+.+.
T Consensus 73 --------------------------------~~~ii~fd~~~~~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 73 --------------------------------DAIIIVFDVTDEESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp --------------------------------SEEEEEEETTBHHHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTGGGG
T ss_pred --------------------------------ccccccccccccccccccc-cccccccccccccccceeeecccccccc
Confidence 9999999999999999999 99999999987 6999999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+|+|+||+++.||.++|..+++.++
T Consensus 120 ------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 120 ------------REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp ------------SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ------------ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999 79999999999999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=195.59 Aligned_cols=149 Identities=31% Similarity=0.557 Sum_probs=133.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04117 10 GVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRA---------------- 73 (161)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCC----------------
Confidence 7999999999999999988999997655 46778888889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+....+ +.|+++||||.|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~sf~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 74 --------------------------------QGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 99998887654 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|.++++.
T Consensus 121 ------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 121 ------------RQVGDEQGNKLAKEYGM-DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHhh
Confidence 56788899999999994 89999999999999999999864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=203.59 Aligned_cols=152 Identities=26% Similarity=0.403 Sum_probs=133.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|.++.|...|.||++ +.+...+.+++ ..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a--------------- 74 (215)
T cd04109 10 AVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA--------------- 74 (215)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC---------------
Confidence 7999999999999999999999996 44456677754 579999999999998888888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC----CCCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP----STPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~----~~piilv~nK~D 154 (228)
|++|+|||+++++||+.+. .|+..+.+... ++|+++|+||+|
T Consensus 75 ---------------------------------d~iilV~D~t~~~s~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~D 120 (215)
T cd04109 75 ---------------------------------HAVFLVYDVTNSQSFENLE-DWYSMVRKVLKSSETQPLVVLVGNKTD 120 (215)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhccccCCCceEEEEEECcc
Confidence 9999999999999999998 89999887642 468999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+. +.++.+++..+++.+++ +++++||++|.||+++|+++...+..
T Consensus 121 L~~~------------~~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 121 LEHN------------RTVKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cccc------------cccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9754 56888889999999994 89999999999999999999998864
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=198.72 Aligned_cols=159 Identities=26% Similarity=0.482 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.|.||++..+ .+.+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a---------------- 73 (182)
T cd04128 10 QIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDA---------------- 73 (182)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCC----------------
Confidence 7999999999999999999999997655 46788899999999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.+..+ ..| ++||||+|+...
T Consensus 74 --------------------------------~~iilv~D~t~~~s~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~ 119 (182)
T cd04128 74 --------------------------------VAILFMFDLTRKSTLNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFAD 119 (182)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCE-EEEEEchhcccc
Confidence 9999999999999999998 89999887654 455 688999999642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+..+ .+.+ .+++..+++.++ .+++++||++|.||+++|.++.+.+.....
T Consensus 120 ~~~~~------~~~~-~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 120 LPPEE------QEEI-TKQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred ccchh------hhhh-HHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 11000 0122 367888999999 589999999999999999999998876444
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-30 Score=192.57 Aligned_cols=151 Identities=27% Similarity=0.490 Sum_probs=138.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++-|++-.-.|++..+ -+++.++|.+++++||||+||++|+++..+||+.+
T Consensus 17 gvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa---------------- 80 (213)
T KOG0095|consen 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA---------------- 80 (213)
T ss_pred CcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc----------------
Confidence 7999999999999999988899998777 58899999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++|+|||++-..||+.+. .|+.+++++. .++-.||||||.|+.+.
T Consensus 81 --------------------------------halilvydiscqpsfdclp-ewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 81 --------------------------------HALILVYDISCQPSFDCLP-EWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred --------------------------------ceEEEEEecccCcchhhhH-HHHHHHHHHhhcceEEEeeccccchhhh
Confidence 9999999999999999999 9999999986 46777999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|.++..-+..|.+... .-|+|+||+..+||+.+|..+.-.+.
T Consensus 128 ------------revp~qigeefs~~qd-myfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 128 ------------REVPQQIGEEFSEAQD-MYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred ------------hhhhHHHHHHHHHhhh-hhhhhhcccchhhHHHHHHHHHHHHH
Confidence 4578788888888877 57999999999999999999887665
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-29 Score=203.99 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=126.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.. +.+|++..+... ....+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~a----------------- 68 (220)
T cd04126 10 NVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGA----------------- 68 (220)
T ss_pred CCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccC-----------------
Confidence 799999999999999974 678886544311 22457899999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||+++++||..+. .|+..+.+. ..+.|++|||||+||.+..
T Consensus 69 -------------------------------d~~IlV~Dvt~~~Sf~~l~-~~~~~l~~~~~~~~piIlVgNK~DL~~~~ 116 (220)
T cd04126 69 -------------------------------AAVILTYDVSNVQSLEELE-DRFLGLTDTANEDCLFAVVGNKLDLTEEG 116 (220)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 9999999999999999998 666555554 3578999999999997511
Q ss_pred HHH-------HHHhhccCccccHHHHHHHHHHhCC-------------ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETI-------EKLKEKKLAPITYPQGLSMAKEIGA-------------VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... ........+.++.+++..++++++. .+|+|+||++|.||+++|..++..++
T Consensus 117 ~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000 0000111367999999999999862 47999999999999999999998776
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=196.43 Aligned_cols=176 Identities=52% Similarity=0.868 Sum_probs=146.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|..+.|...+.+|+.+.+...+.+++..+.+.+||++|++.+....+..+..+
T Consensus 11 g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a----------------- 73 (187)
T cd04129 11 ACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKA----------------- 73 (187)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCC-----------------
Confidence 799999999999999988888888877777778888889999999999988876666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
++++++||++++++|+.+...|+..+.++.++.|++|||||+|+.+...
T Consensus 74 -------------------------------~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 74 -------------------------------HVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 9999999999999999997679999988777899999999999864211
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCccc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVL 227 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~ 227 (228)
..+. ....+.++.+++..+++.+++.+|+++||++|.||+++|+++.+.++..+++.|... ||+
T Consensus 123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~-~~~ 186 (187)
T cd04129 123 AKEE--YRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSEPGAG-CCI 186 (187)
T ss_pred cccc--cccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCcccccC-ccc
Confidence 1100 111256777889999999997789999999999999999999999998888766654 544
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-29 Score=203.13 Aligned_cols=151 Identities=25% Similarity=0.419 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...+.+|++..+ ...+..++..+.+.+||++|++.+..++..+++++
T Consensus 23 gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 86 (219)
T PLN03071 23 GTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG---------------- 86 (219)
T ss_pred CCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc----------------
Confidence 7999999999999999999999996554 45667778889999999999999999999889988
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++|+|||+++++||..+. .|+..+.....+.|++|||||+|+...
T Consensus 87 --------------------------------~~~ilvfD~~~~~s~~~i~-~w~~~i~~~~~~~piilvgNK~Dl~~~- 132 (219)
T PLN03071 87 --------------------------------QCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR- 132 (219)
T ss_pred --------------------------------cEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhhhhc-
Confidence 9999999999999999998 999999887778999999999999642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+++ .+++..+ .+|+++||++|.||+++|.+++..++..
T Consensus 133 ------------~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 133 ------------QVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred ------------cCCHHHH-HHHHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 3444444 6777777 5899999999999999999999998764
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-29 Score=193.36 Aligned_cols=146 Identities=26% Similarity=0.358 Sum_probs=122.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.+.|+ +..+...+.+++..+.+.+||++|++.. .+++.+
T Consensus 10 gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~----------------- 66 (158)
T cd04103 10 QSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWV----------------- 66 (158)
T ss_pred CCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcC-----------------
Confidence 79999999999999998777665 4455677888999999999999999742 234555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|++||+.+. .|+..+..+. .+.|++|||||+|+...
T Consensus 67 -------------------------------~~~ilv~d~~~~~sf~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 67 -------------------------------DAVIFVFSLENEASFQTVY-NLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 9999999999999999998 8999998775 46899999999998632
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .+.++.+++..+++..+...|+||||++|.||+++|.++++.
T Consensus 115 ~----------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 115 N----------PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred C----------CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 1 156888899999988754589999999999999999999865
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=193.93 Aligned_cols=152 Identities=28% Similarity=0.549 Sum_probs=140.9
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
||||||+-||+.+.|...+..|+..+| .+.+.+.+....+.||||+||++|-.+-|.||++.
T Consensus 24 VGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS----------------- 86 (218)
T KOG0088|consen 24 VGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS----------------- 86 (218)
T ss_pred cchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC-----------------
Confidence 899999999999999999999996555 67888889999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+||++||+.+. .|..+++.... .+.+++||||+||...
T Consensus 87 -------------------------------nGalLVyDITDrdSFqKVK-nWV~Elr~mlGnei~l~IVGNKiDLEee- 133 (218)
T KOG0088|consen 87 -------------------------------NGALLVYDITDRDSFQKVK-NWVLELRTMLGNEIELLIVGNKIDLEEE- 133 (218)
T ss_pred -------------------------------CceEEEEeccchHHHHHHH-HHHHHHHHHhCCeeEEEEecCcccHHHh-
Confidence 9999999999999999999 99999998874 5788999999999986
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|.++.+++..+++.-| ..|+++||+.+.||.++|+.+....++.
T Consensus 134 -----------R~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 134 -----------RQVTRQEAEAYAESVG-ALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred -----------hhhhHHHHHHHHHhhc-hhheecccccccCHHHHHHHHHHHHHHH
Confidence 7899999999999999 5899999999999999999998887754
|
|
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=200.17 Aligned_cols=154 Identities=32% Similarity=0.548 Sum_probs=142.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+|+.+|+++.|.+.|.||+++.|.+.+.+++..+.++|+||+|++.+..+...+..+.
T Consensus 13 gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~----------------- 75 (196)
T KOG0395|consen 13 GVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG----------------- 75 (196)
T ss_pred CCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC-----------------
Confidence 799999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++||+++|+.||+.+. .+...|.+.. ..+|++|||||+|+.+.
T Consensus 76 -------------------------------~gF~lVysitd~~SF~~~~-~l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 76 -------------------------------DGFLLVYSITDRSSFEEAK-QLREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 9999999999999999998 8877775432 46899999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|.++.+++..++..++| +|+|+||+.+.+|+++|..+++.+-.++
T Consensus 124 ------------R~V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 124 ------------RQVSEEEGKALARSWGC-AFIETSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred ------------cccCHHHHHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhhh
Confidence 67999999999999997 5999999999999999999999887633
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=191.99 Aligned_cols=150 Identities=31% Similarity=0.559 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.+|+++.+...+.+++..+.+.+||++|++.+..+++.++.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 73 (163)
T cd04176 11 GVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG----------------- 73 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhC-----------------
Confidence 799999999999999998899998777777888899999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 74 -------------------------------QGFIVVYSLVNQQTFQDIK-PMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 9999999999999999998 8888887653 47999999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+...++..+++.++ .+++++||++|.|++++|.++.+.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 ------------REVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ------------CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 4466677888888888 4899999999999999999998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=196.54 Aligned_cols=153 Identities=23% Similarity=0.417 Sum_probs=135.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 73 (188)
T cd04125 10 GVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGA---------------- 73 (188)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCC----------------
Confidence 7999999999999999888999997655 46678888899999999999999888888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... ...|+++||||+|+.+.
T Consensus 74 --------------------------------d~iilv~d~~~~~s~~~i~-~~~~~i~~~~~~~~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 74 --------------------------------HGYLLVYDVTDQESFENLK-FWINEINRYARENVIKVIVANKSDLVNN 120 (188)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCCCccc
Confidence 9999999999999999998 8999998765 46899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++..++ +++++||++|.|++++|.++++.++..
T Consensus 121 ------------~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 121 ------------KVVDSNIAKSFCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred ------------ccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45778888899988885 899999999999999999999988754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=192.54 Aligned_cols=148 Identities=26% Similarity=0.468 Sum_probs=129.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||++..+...+..++..+.+.+||++|++.+..++..++..+
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (165)
T cd04140 11 GVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKG----------------- 73 (165)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcC-----------------
Confidence 799999999999999988899999877777777788889999999999999887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
+++++|||+++++||+.+. .|+..+.+.. ++.|++||+||+|+.
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 74 -------------------------------HAFILVYSVTSKQSLEELK-PIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 9999999999999999998 8887776642 468999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.. +.+..+++..++..+++ +|+|+||++|.||+++|++++.
T Consensus 122 ~~------------~~v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 122 HK------------REVSSNEGAACATEWNC-AFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred cc------------CeecHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHHHHh
Confidence 64 45777788888988885 8999999999999999999975
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=193.15 Aligned_cols=153 Identities=33% Similarity=0.577 Sum_probs=138.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE---------cCeEEeeeeeeCCCCcccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV---------DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~ 70 (228)
||||||++.+|+.+.|......|++.++. +++.. .++.+.+++|||+||++|+++...+|+++
T Consensus 19 GVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDA------- 91 (219)
T KOG0081|consen 19 GVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDA------- 91 (219)
T ss_pred CCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhh-------
Confidence 79999999999999999999999987774 55544 25689999999999999999999999999
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIIL 148 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piil 148 (228)
.+++++||+|+..||.++. .|+..++.+ ++++.|+|
T Consensus 92 -----------------------------------------MGFlLiFDlT~eqSFLnvr-nWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 92 -----------------------------------------MGFLLIFDLTSEQSFLNVR-NWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred -----------------------------------------ccceEEEeccchHHHHHHH-HHHHHHHHhhccCCCCEEE
Confidence 9999999999999999998 999998854 57888999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|||+||.+. |.++..++..+++++| +||||+||.+|.||++..+-++..+++.
T Consensus 130 cGNK~DL~~~------------R~Vs~~qa~~La~kyg-lPYfETSA~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 130 CGNKADLEDQ------------RVVSEDQAAALADKYG-LPYFETSACTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred EcCccchhhh------------hhhhHHHHHHHHHHhC-CCeeeeccccCcCHHHHHHHHHHHHHHH
Confidence 9999999986 7899999999999999 6999999999999999988888877754
|
|
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=191.56 Aligned_cols=151 Identities=28% Similarity=0.577 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.+|++..+ ...+..++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~---------------- 74 (165)
T cd01865 11 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGA---------------- 74 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCC----------------
Confidence 7999999999999999988999997555 34566788889999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+..+. +..|+++||||+|+...
T Consensus 75 --------------------------------~~~l~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 75 --------------------------------MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 9999999999999999998 8999988776 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++...+.
T Consensus 122 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 122 ------------RVVSSERGRQLADQLGF-EFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44677788888888885 8999999999999999999988654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=192.63 Aligned_cols=152 Identities=29% Similarity=0.579 Sum_probs=134.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|.+.+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 13 ~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a---------------- 76 (167)
T cd01867 13 GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA---------------- 76 (167)
T ss_pred CCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC----------------
Confidence 79999999999999999999999976553 5677888889999999999998888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++||||+|+.+.
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 77 --------------------------------MGIILVYDITDEKSFENIR-NWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8999988765 46899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.+++++++.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 124 ------------RVVSKEEGEALADEYGI-KFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45777888899999995 89999999999999999999998864
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=194.84 Aligned_cols=152 Identities=34% Similarity=0.579 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc----------CeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD----------GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|.++.|.+.+.+|++..+. ..+.+. +..+.+.+||++|++.+..++..+++++
T Consensus 14 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~------ 87 (180)
T cd04127 14 GVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA------ 87 (180)
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCC------
Confidence 79999999999999999999999975553 444443 4578999999999999988888888888
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++++|||+++++||..+. .|+..+.... ++.|++
T Consensus 88 ------------------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 88 ------------------------------------------MGFLLIFDLTNEQSFLNVR-NWMSQLQTHAYCENPDIV 124 (180)
T ss_pred ------------------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEE
Confidence 9999999999999999998 9999887653 478999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+||||+|+.+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.+++
T Consensus 125 iv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 125 LCGNKADLEDQ------------RQVSEEQAKALADKYGI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEEeCccchhc------------CccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999764 45788889999999995 89999999999999999999987764
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=195.63 Aligned_cols=154 Identities=32% Similarity=0.592 Sum_probs=134.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+.+.|. +.+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a--------------- 74 (191)
T cd04112 10 GVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA--------------- 74 (191)
T ss_pred CCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC---------------
Confidence 79999999999999885 467888876664 4578889999999999999998888887788877
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|+.+. .|+..+..... ..|+++|+||+|+..
T Consensus 75 ---------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 75 ---------------------------------HALLLLYDITNKASFDNIR-AWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 9999999999999999998 89999988763 789999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. +.+..+++..+++.+++ +|+++||++|.|++++|.++.+.+....
T Consensus 121 ~------------~~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 121 E------------RVVKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred c------------cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 4 45777888899998884 8999999999999999999999887653
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=190.36 Aligned_cols=150 Identities=25% Similarity=0.461 Sum_probs=129.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.+|++..+ ...+..++..+.+.+||++|++.+..++..++..+
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (166)
T cd00877 10 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGG---------------- 73 (166)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCC----------------
Confidence 7999999999999999888999996554 45566788889999999999999888888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|||+++++||..+. .|+..+.+...+.|+++||||+|+.+.
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piiiv~nK~Dl~~~- 119 (166)
T cd00877 74 --------------------------------QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCGNIPIVLCGNKVDIKDR- 119 (166)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEEchhcccc-
Confidence 9999999999999999998 899999988778999999999999742
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+. .+...+++..+ .+++|+||++|.|++++|+++++.++.
T Consensus 120 ------------~~~-~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 120 ------------KVK-AKQITFHRKKN-LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred ------------cCC-HHHHHHHHHcC-CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 233 23456666666 589999999999999999999998864
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=190.78 Aligned_cols=151 Identities=30% Similarity=0.603 Sum_probs=134.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---------------- 75 (166)
T cd01869 12 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 75 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC----------------
Confidence 7999999999999999888889887555 46677888889999999999999888888788877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 76 --------------------------------~~ii~v~d~~~~~s~~~l~-~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 76 --------------------------------HGIIIVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 9999999999999999998 8999998776 57899999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.+++ +++++||++|.|++++|.++++.+.
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 123 ------------RVVDYSEAQEFADELGI-PFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEECCCCcCHHHHHHHHHHHHH
Confidence 45778889999999995 8999999999999999999999875
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=192.26 Aligned_cols=153 Identities=30% Similarity=0.538 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.|.||++..+. ..+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a---------------- 73 (170)
T cd04108 10 SVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGA---------------- 73 (170)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCC----------------
Confidence 79999999999999999999999976664 6678889899999999999999999998889888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-C-CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-P-STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+. .|+..+.+.. + ..|+++|+||+|+..
T Consensus 74 --------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 74 --------------------------------QAIIIVFDLTDVASLEHTR-QWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 9999999999999999998 8999876543 3 478999999999965
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... .....+++..+++.+++ +++++||++|.||+++|+.+++.+.
T Consensus 121 ~~~----------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 121 PAQ----------YALMEQDAIKLAAEMQA-EYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred ccc----------ccccHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 321 22445677888888884 8999999999999999999998764
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=188.40 Aligned_cols=149 Identities=34% Similarity=0.578 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||.++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~----------------- 73 (162)
T cd04138 11 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 73 (162)
T ss_pred CCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcC-----------------
Confidence 799999999999999998999999888877888899889999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. .|+..+.+.. .+.|++||+||+|+..
T Consensus 74 -------------------------------~~~i~v~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~- 120 (162)
T cd04138 74 -------------------------------EGFLCVFAINSRKSFEDIH-TYREQIKRVKDSDDVPMVLVGNKCDLAA- 120 (162)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccccc-
Confidence 9999999999999999997 8888877654 4689999999999976
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+...++..+++.+++ +++++||++|.|++++|+++++.+
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 121 ------------RTVSSRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ------------ceecHHHHHHHHHHhCC-eEEEecCCCCCCHHHHHHHHHHHh
Confidence 23666778888888884 899999999999999999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=189.73 Aligned_cols=151 Identities=25% Similarity=0.531 Sum_probs=134.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.|...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (168)
T cd04119 10 GVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDT---------------- 73 (168)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccC----------------
Confidence 7999999999999999999999997666 46678889999999999999998888888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC------CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC------PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~------~~~piilv~nK~ 153 (228)
|++|+|||++++++|..+. .|+..+.+.. .+.|+++|+||+
T Consensus 74 --------------------------------d~~ilv~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~ 120 (168)
T cd04119 74 --------------------------------QGVLLVYDVTDRQSFEALD-SWLKEMKQEGGPHGNMENIVVVVCANKI 120 (168)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhccccccCCCceEEEEEEch
Confidence 9999999999999999998 8999988764 358999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+.+. +.++.+++..+++.++ .+++++||++|.|++++|+++++.++
T Consensus 121 Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 121 DLTKH------------RAVSEDEGRLWAESKG-FKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred hcccc------------cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99753 4577888888999888 58999999999999999999998876
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=189.57 Aligned_cols=151 Identities=29% Similarity=0.544 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~----------------- 72 (164)
T smart00173 10 GVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTG----------------- 72 (164)
T ss_pred CCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhC-----------------
Confidence 799999999999999998899999888888888899999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+.. .+.|+++||||+|+...
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 73 -------------------------------EGFLLVYSITDRQSFEEIK-KFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8887776543 36899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 121 ------------RVVSTEEGKELARQWG-CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ------------ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 4467778888998888 69999999999999999999998765
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=185.69 Aligned_cols=155 Identities=28% Similarity=0.527 Sum_probs=143.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+.+|+...|..+...|++..+. ..+.+.|++++++||||+|+++|+.+..++|+++
T Consensus 21 gvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga---------------- 84 (215)
T KOG0097|consen 21 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 84 (215)
T ss_pred cccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc----------------
Confidence 79999999999999999999999998886 4568999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~ 158 (228)
.+.++|||++.++++.++. .|+...++. +++..++|+|||.||...
T Consensus 85 --------------------------------agalmvyditrrstynhls-swl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 85 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred --------------------------------cceeEEEEehhhhhhhhHH-HHHhhhhccCCCceEEEEecchhhhhhc
Confidence 9999999999999999998 999887765 467789999999999986
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|.++.+++..|+++.| .-|+|+||++|.||++.|-+...+|.+..+
T Consensus 132 ------------rdv~yeeak~faeeng-l~fle~saktg~nvedafle~akkiyqniq 177 (215)
T KOG0097|consen 132 ------------RDVTYEEAKEFAEENG-LMFLEASAKTGQNVEDAFLETAKKIYQNIQ 177 (215)
T ss_pred ------------ccCcHHHHHHHHhhcC-eEEEEecccccCcHHHHHHHHHHHHHHhhh
Confidence 7799999999999999 589999999999999999999999976543
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=201.39 Aligned_cols=156 Identities=25% Similarity=0.356 Sum_probs=133.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...|.||+++.+.+.+.+++..+.+.||||+|++.+..++..++..+
T Consensus 10 gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~a----------------- 72 (247)
T cd04143 10 KVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTG----------------- 72 (247)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccC-----------------
Confidence 799999999999999998999999887788889999999999999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh----------CCCCCEEEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH----------CPSTPIILVG 150 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~----------~~~~piilv~ 150 (228)
|++|+|||+++++||+.+. .|+..+... ..+.|++||+
T Consensus 73 -------------------------------d~iIlVfdv~~~~Sf~~i~-~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 73 -------------------------------DVFILVFSLDNRESFEEVC-RLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 9999999999999999997 888887653 2468999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
||+|+... +.+..+++..++.......++++||++|.||+++|++++.....+..
T Consensus 121 NK~Dl~~~------------~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 121 NKADRDFP------------REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred ECccchhc------------cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccccc
Confidence 99999764 44777788777765422589999999999999999999997755444
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-28 Score=189.27 Aligned_cols=149 Identities=30% Similarity=0.541 Sum_probs=132.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 15 ~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~---------------- 78 (170)
T cd04116 15 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGS---------------- 78 (170)
T ss_pred CCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCC----------------
Confidence 7999999999999999888888886554 46778899999999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++++|||+++++||+.+. .|+..+.... .+.|++||+||+|
T Consensus 79 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 79 --------------------------------DCCLLTFAVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 9999999999999999997 8888776543 3589999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.. +.++.+++..+++.+++.+++++||++|.|++++|.++++.
T Consensus 126 l~~-------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPE-------------RQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccc-------------cccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 974 45788889999999987789999999999999999999875
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=187.29 Aligned_cols=151 Identities=26% Similarity=0.483 Sum_probs=129.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.++.+. .+.....+++..+.+.+||++|++.+..+++.+++.+
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04124 10 AVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCC----------------
Confidence 79999999999999998888887753 3455677788899999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.+|..+. .|+..+.+..++.|+++|+||+|+...
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~p~ivv~nK~Dl~~~- 119 (161)
T cd04124 74 --------------------------------HACILVFDVTRKITYKNLS-KWYEELREYRPEIPCIVVANKIDLDPS- 119 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCcEEEEEECccCchh-
Confidence 9999999999999999997 999999887778999999999998532
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. .++...+++.++ .+++++||++|.|++++|+.+++.++.++
T Consensus 120 -------------~-~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 161 (161)
T cd04124 120 -------------V-TQKKFNFAEKHN-LPLYYVSAADGTNVVKLFQDAIKLAVSYK 161 (161)
T ss_pred -------------H-HHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 1 234556677777 48999999999999999999999887653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=187.79 Aligned_cols=149 Identities=27% Similarity=0.507 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc--CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD--GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|+++.|.+.+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-------------- 75 (162)
T cd04106 10 NVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGA-------------- 75 (162)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCC--------------
Confidence 7999999999999999989999997665 4556666 7789999999999999988888888888
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+. .|+..+.....+.|+++|+||+|+..
T Consensus 76 ----------------------------------~~~v~v~d~~~~~s~~~l~-~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 76 ----------------------------------QACILVFSTTDRESFEAIE-SWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEChhccc
Confidence 9999999999999999998 99999887777899999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. +.++.+++..+++.+++ +++++||++|.|++++|+++...
T Consensus 121 ~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 121 Q------------AVITNEEAEALAKRLQL-PLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred c------------cCCCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHh
Confidence 4 45777889999999995 89999999999999999998753
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=192.47 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=126.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.||++.. +...+.+++..+.+.+|||+|...+.......+ +.....
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~------~~~~~~------- 76 (198)
T cd04142 10 GVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEW------MDPRFR------- 76 (198)
T ss_pred CCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHH------HHHHHh-------
Confidence 799999999999999998899998644 445677889989999999999865432111000 000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
....+|++++|||+++++||+.+. .|+..+.+.. +++|++|||||+|+
T Consensus 77 ---------------------------~~~~ad~iilv~D~~~~~S~~~~~-~~~~~i~~~~~~~~~~~piiivgNK~Dl 128 (198)
T cd04142 77 ---------------------------GLRNSRAFILVYDICSPDSFHYVK-LLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred ---------------------------hhccCCEEEEEEECCCHHHHHHHH-HHHHHHHHhcccCCCCCCEEEEEECccc
Confidence 011239999999999999999998 8888877653 57999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
... +.++.+++..++. .++ .+|+++||++|.||+++|+.++..++.+.+..
T Consensus 129 ~~~------------~~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~ 180 (198)
T cd04142 129 QRH------------RFAPRHVLSVLVRKSWK-CGYLECSAKYNWHILLLFKELLISATTRGRST 180 (198)
T ss_pred ccc------------ccccHHHHHHHHHHhcC-CcEEEecCCCCCCHHHHHHHHHHHhhccCCCc
Confidence 764 4466667777754 457 48999999999999999999999999877653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=187.22 Aligned_cols=150 Identities=25% Similarity=0.485 Sum_probs=131.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|..+.|...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 13 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~---------------- 76 (165)
T cd01864 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSA---------------- 76 (165)
T ss_pred CCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886544 45677888888999999999998888777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 77 --------------------------------d~~llv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 77 --------------------------------NGAIIAYDITRRSSFESVP-HWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred --------------------------------CEEEEEEECcCHHHHHhHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9999988764 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..+++..+++.+++..++|+||++|.|++++|+++.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 ------------REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred ------------cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 45777888999999987789999999999999999999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=186.12 Aligned_cols=150 Identities=30% Similarity=0.531 Sum_probs=132.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+++.+.....+++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 74 (164)
T cd04145 12 GVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTG----------------- 74 (164)
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhC-----------------
Confidence 799999999999999988889998877777778899889999999999999888888777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+.. .+.|++||+||+|+...
T Consensus 75 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 75 -------------------------------EGFLLVFSVTDRGSFEEVD-KFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 9999999999999999998 8888877642 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.+++ +++++||++|.|++++|++++..+
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 ------------RKVSREEGQELARKLKI-PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------------ceecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 44677778889988884 899999999999999999998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=186.31 Aligned_cols=152 Identities=30% Similarity=0.552 Sum_probs=136.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|...+.+|+++.+.+.+.+++..+.+++||++|++.+..++..++..+
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 73 (168)
T cd04177 11 GVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSG----------------- 73 (168)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhC-----------------
Confidence 799999999999999988899999887877788899889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|+.+. .|...+.+.. .+.|+++++||+|+...
T Consensus 74 -------------------------------~~~vlv~~~~~~~s~~~~~-~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 74 -------------------------------QGFLLVYSVTSEASLNELG-ELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 9999999999999999998 8888887643 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++..+++++||++|.|++++|.+++.+++
T Consensus 122 ------------~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 122 ------------RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred ------------CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4577778888888888668999999999999999999998876
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=186.63 Aligned_cols=151 Identities=32% Similarity=0.531 Sum_probs=128.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-ccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-DRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|.+.+.++....+...+.+++..+.+++||++|+..+ ......+++.+
T Consensus 9 ~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~---------------- 72 (165)
T cd04146 9 GVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWA---------------- 72 (165)
T ss_pred CCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhC----------------
Confidence 7999999999999999888999987777777888999999999999999852 23333344455
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||+.+. .|+..+.... .+.|+++||||+|+.
T Consensus 73 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 73 --------------------------------DGFVLVYSITDRSSFDEIS-QLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999999999999998 8888888754 379999999999986
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC-CCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ-KGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~-~~v~~lf~~l~~~i~ 213 (228)
.. +.++.+++..+++.++ .+|+++||++| .||+++|.++++.+.
T Consensus 120 ~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 120 HY------------RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred Hh------------CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 54 4578888999999999 58999999999 599999999998664
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=185.26 Aligned_cols=150 Identities=30% Similarity=0.545 Sum_probs=132.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.+...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++.+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 76 (165)
T cd01868 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA---------------- 76 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC----------------
Confidence 7999999999999999888889987555 56778888889999999999998888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. +|+..+.+... +.|++||+||+|+...
T Consensus 77 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 77 --------------------------------VGALLVYDITKKQTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 99999887764 5899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+..++...+++.++ .+++++||++|.|++++|++++..+
T Consensus 124 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 124 ------------RAVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4577888899999888 4899999999999999999998875
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=187.15 Aligned_cols=153 Identities=22% Similarity=0.280 Sum_probs=130.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..++.++
T Consensus 14 ~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~--------------- 78 (169)
T cd01892 14 GSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAAC--------------- 78 (169)
T ss_pred CCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcC---------------
Confidence 79999999999999998 899999987765 5678889889999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+... .++|+++|+||+|+...
T Consensus 79 ---------------------------------d~~llv~d~~~~~s~~~~~-~~~~~~~~~-~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 79 ---------------------------------DVACLVYDSSDPKSFSYCA-EVYKKYFML-GEIPCLFVAAKADLDEQ 123 (169)
T ss_pred ---------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHhccC-CCCeEEEEEEccccccc
Confidence 9999999999999999987 888765432 36999999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+...+...+++.+++..++++||++|.|++++|+.+.+.+..+
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 124 ------------QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQYP 168 (169)
T ss_pred ------------ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhCC
Confidence 223344566788888865679999999999999999999988753
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=193.58 Aligned_cols=153 Identities=33% Similarity=0.528 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.+|++..+ .+.+.+ ++..+.+.+||++|++.+..++..+++++
T Consensus 12 ~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~--------------- 76 (211)
T cd04111 12 TVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNS--------------- 76 (211)
T ss_pred CCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCC---------------
Confidence 7999999999999999888889986444 556666 56788999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||+.+. +|+..+.... ...|++|||||+|+.
T Consensus 77 ---------------------------------d~iilv~D~~~~~Sf~~l~-~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 77 ---------------------------------VGVLLVFDITNRESFEHVH-DWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred ---------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 9999999999999999998 8999887654 257889999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. +.++.+++..+++.++ .+++++||++|.||+++|+++.+.+.+.
T Consensus 123 ~~------------~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 123 SQ------------RQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred cc------------cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 64 5588888999999999 5899999999999999999999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=184.90 Aligned_cols=152 Identities=28% Similarity=0.557 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 14 ~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 77 (168)
T cd01866 14 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA---------------- 77 (168)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888876555 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|+..+..+. ++.|++||+||.|+...
T Consensus 78 --------------------------------d~il~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 78 --------------------------------AGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9999998765 67999999999999854
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..++..++ .+++|+||+++.|++++|.++++.+++
T Consensus 125 ------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 125 ------------REVSYEEGEAFAKEHG-LIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred ------------cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4578888889999988 589999999999999999999998764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=187.05 Aligned_cols=156 Identities=27% Similarity=0.507 Sum_probs=134.6
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|.. .|.+|++..+ ...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 10 ~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~--------------- 74 (193)
T cd04118 10 SVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA--------------- 74 (193)
T ss_pred CCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC---------------
Confidence 799999999999999974 7889997766 45688899999999999999999988888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+....++.|+++|+||+|+...
T Consensus 75 ---------------------------------d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 75 ---------------------------------KAAIVCYDLTDSSSFERAK-FWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhcCCCCCEEEEEEccccccc
Confidence 9999999999999999987 899998877668999999999998643
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ..+.+..+++..++..++ .+++++||++|.|++++|+++.+.+.+
T Consensus 121 ~~--------~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 121 DR--------SLRQVDFHDVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cc--------ccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 10 014566677888888888 489999999999999999999998865
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=182.90 Aligned_cols=150 Identities=32% Similarity=0.564 Sum_probs=132.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd04113 10 GTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCC----------------
Confidence 7999999999999999888888886555 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ++.|++||+||+|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 74 --------------------------------AGALLVYDITNRTSFEALP-TWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 9999999999999999998 8988887654 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||+++.|++++|.++++.+
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 121 ------------REVTFLEASRFAQENG-LLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578888999999999 6899999999999999999998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=181.76 Aligned_cols=161 Identities=73% Similarity=1.239 Sum_probs=137.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.++..+.+......++..+.+.+||++|++.+..++...++.+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~----------------- 72 (171)
T cd00157 10 AVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNT----------------- 72 (171)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCC-----------------
Confidence 799999999999999988889999888887888889999999999999998877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|....+.|+..+..+..+.|+++|+||+|+.....
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 73 -------------------------------DVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchh
Confidence 9999999999999999988789988888877899999999999987643
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
..... ......+..+++..++..+++.+|+++||++|.|++++|+++++
T Consensus 122 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 122 TLKKL-EKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhc-ccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 21111 11113467788899999999779999999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=193.04 Aligned_cols=152 Identities=28% Similarity=0.515 Sum_probs=135.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|++..+ .+.+.+++..+.+.+||++|++.+..++..+++++
T Consensus 22 ~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 85 (216)
T PLN03110 22 GVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGA---------------- 85 (216)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCC----------------
Confidence 7999999999999999888899997655 57788899999999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|+.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 86 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 86 --------------------------------VGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 9999999999999999998 8999888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..++..++ .+++++||++|.|++++|++++..+.+
T Consensus 133 ------------~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 133 ------------RSVAEEDGQALAEKEG-LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred ------------cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5577888899998888 599999999999999999999988754
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=183.30 Aligned_cols=150 Identities=29% Similarity=0.505 Sum_probs=131.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccc-cCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+.+.|...+.++++..+ ...+.+++..+.+.+||++|++.++ .++..+++++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~--------------- 76 (170)
T cd04115 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNV--------------- 76 (170)
T ss_pred CCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCC---------------
Confidence 7999999999999999888899986554 4667889999999999999998876 4667677777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.... .++|+++|+||+|+.
T Consensus 77 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 77 ---------------------------------HAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhcCCCCCCEEEEEECccch
Confidence 9999999999999999998 9998888764 469999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC---CCCHHHHHHHHHHHh
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT---QKGLKTVFDEAIRAV 212 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~---~~~v~~lf~~l~~~i 212 (228)
.. +.++.+++..+++.++ .+|+|+||++ +.|++++|.++++.+
T Consensus 123 ~~------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 123 EQ------------IQVPTDLAQRFADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hh------------cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 65 5577888899999888 5899999999 999999999999876
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-27 Score=189.85 Aligned_cols=154 Identities=27% Similarity=0.526 Sum_probs=135.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 16 gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~a---------------- 79 (210)
T PLN03108 16 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGA---------------- 79 (210)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886555 45678889889999999999999888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 80 --------------------------------d~~vlv~D~~~~~s~~~l~-~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 80 --------------------------------AGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred --------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 9999999999999999997 8988877654 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.+++ +++++||+++.||+++|.++++.+++..
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 127 ------------RAVSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 56888899999999995 8999999999999999999999887643
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=180.05 Aligned_cols=151 Identities=34% Similarity=0.539 Sum_probs=127.4
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|||||||++++..+ .|.+.+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~------------- 76 (164)
T cd04101 10 AVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP------------- 76 (164)
T ss_pred CCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC-------------
Confidence 79999999999965 68889999996554 4455564 6779999999999988877777777776
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.....+.|+++|+||+|+.
T Consensus 77 -----------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 77 -----------------------------------SVFILVYDVSNKASFENCS-RWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred -----------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccc
Confidence 9999999999999999987 9999988877779999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. ..++..++..+...+++ +++++||++|.|++++|+.+.+.++
T Consensus 121 ~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (164)
T cd04101 121 DK------------AEVTDAQAQAFAQANQL-KFFKTSALRGVGYEEPFESLARAFH 164 (164)
T ss_pred cc------------cCCCHHHHHHHHHHcCC-eEEEEeCCCCCChHHHHHHHHHHhC
Confidence 64 34666667777777784 7999999999999999999998753
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=189.18 Aligned_cols=150 Identities=27% Similarity=0.395 Sum_probs=127.1
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccc-cccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP-QTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|+.+.|. ..+.++.+ +.+...+.+++..+.+.+||++|++. .+...++. ++
T Consensus 10 gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~a-------------- 73 (221)
T cd04148 10 GVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQG-------------- 73 (221)
T ss_pred CCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCC--------------
Confidence 79999999999998886 77888876 56677888899999999999999982 22333333 55
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl 155 (228)
|++++|||++|+.||..+. .|+..+.... .+.|+++|+||+|+
T Consensus 74 ----------------------------------d~iilV~d~td~~S~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl 118 (221)
T cd04148 74 ----------------------------------DAFVVVYSVTDRSSFERAS-ELRIQLRRNRQLEDRPIILVGNKSDL 118 (221)
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEChhc
Confidence 9999999999999999998 8988887764 47999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... +.++.+++..++..+++ +|+++||++|.||+++|++++..+..
T Consensus 119 ~~~------------~~v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 119 ARS------------REVSVQEGRACAVVFDC-KFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred ccc------------ceecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 764 45777888889988885 89999999999999999999998864
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=180.57 Aligned_cols=166 Identities=27% Similarity=0.466 Sum_probs=138.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.||....+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 11 g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----------------- 73 (180)
T cd04137 11 SVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGI----------------- 73 (180)
T ss_pred CCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhC-----------------
Confidence 799999999999999988889988777777778888888999999999998877777666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|+.+. .|+..+.+.. .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 74 -------------------------------HGYILVYSVTSRKSFEVVK-VIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 9999999999999999998 7766666543 36899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCC--CCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK--KKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~--~~~~~~~ 228 (228)
+.+..++...+++.++ .+++++||+++.|++++|.++.+.+.......+. +++|.+|
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (180)
T cd04137 122 ------------RQVSTEEGKELAESWG-AAFLESSARENENVEEAFELLIEEIEKVENPLDPGQKKKCSIM 180 (180)
T ss_pred ------------CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeC
Confidence 3466667778888888 5899999999999999999999988765544333 4579875
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=176.05 Aligned_cols=152 Identities=33% Similarity=0.590 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.+..+...+.++++..+ ...+.+++..+.+.+||++|+..+..++..++..+
T Consensus 10 ~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~---------------- 73 (164)
T smart00175 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGA---------------- 73 (164)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCC----------------
Confidence 7999999999999999888888886655 45678888889999999999988887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+++.+. .|+..+..+. +++|+++|+||+|+...
T Consensus 74 --------------------------------d~~ilv~d~~~~~s~~~~~-~~l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 74 --------------------------------VGALLVYDITNRESFENLK-NWLKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEEchhcccc
Confidence 9999999999999999998 8999888776 67999999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++++.+..
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 121 ------------RQVSREEAEAFAEEHGL-PFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 44677788889998895 89999999999999999999998754
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-26 Score=175.94 Aligned_cols=150 Identities=28% Similarity=0.551 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---------------- 74 (163)
T cd01860 11 SVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA---------------- 74 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC----------------
Confidence 7999999999999999887888887655 56778899999999999999988887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... ...|+++++||+|+...
T Consensus 75 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 75 --------------------------------AAAIVVYDITSEESFEKAK-SWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 9998887765 57899999999998853
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 122 ------------RQVSTEEAQEYADENG-LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ------------CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4477788889999999 5899999999999999999999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-26 Score=175.61 Aligned_cols=149 Identities=32% Similarity=0.558 Sum_probs=129.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~---------------- 73 (161)
T cd01861 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 73 (161)
T ss_pred CCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886544 56677888888999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 74 --------------------------------~~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~ 120 (161)
T cd01861 74 --------------------------------SVAVVVYDITNRQSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDLSDK 120 (161)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhcccc
Confidence 9999999999999999998 89998876653 6999999999999643
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..++...+++..+ .+++++||+++.|++++|.++.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 121 ------------RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ------------CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 4577778888888888 589999999999999999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=176.17 Aligned_cols=154 Identities=29% Similarity=0.545 Sum_probs=131.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 73 (172)
T cd01862 10 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGA---------------- 73 (172)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCC----------------
Confidence 7999999999999999888888886544 45678888889999999999998888888778777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-----CCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-----STPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-----~~piilv~nK~D 154 (228)
|++++|||++++++|..+. .|...+..... ++|+++|+||+|
T Consensus 74 --------------------------------d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (172)
T cd01862 74 --------------------------------DCCVLVYDVTNPKSFESLD-SWRDEFLIQASPSDPENFPFVVLGNKID 120 (172)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCccCCCCceEEEEEECcc
Confidence 9999999999999999987 78777655432 689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+..+ +.++.++...+++..+..+++++||++|.|++++|+++.+.+++.
T Consensus 121 l~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 121 LEEK------------RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccc------------cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9853 346677788888888856899999999999999999999988765
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=173.55 Aligned_cols=151 Identities=30% Similarity=0.554 Sum_probs=131.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++.+.|...+.+++.+.+.+...+++..+.+.+||++|+..+...+..+++.+
T Consensus 10 ~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 72 (164)
T cd04139 10 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSG----------------- 72 (164)
T ss_pred CCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcC-----------------
Confidence 799999999999999988999999888888888899999999999999998887777777776
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 73 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 73 -------------------------------EGFLLVFSITDMESFTATA-EFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 9999999999999999998 7877777653 47999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.....+...++..++ .+++++||++|.|++++|.++.+.+.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 121 ------------RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ------------cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2356667778888888 48999999999999999999998775
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-25 Score=172.37 Aligned_cols=148 Identities=28% Similarity=0.555 Sum_probs=128.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 73 (161)
T cd01863 10 GVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGA---------------- 73 (161)
T ss_pred CCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCC----------------
Confidence 79999999999999998778888876554 4567788889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.+|..+. .|+..+..+. .+.|+++|+||+|+..
T Consensus 74 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 74 --------------------------------QGVILVYDVTRRDTFTNLE-TWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred --------------------------------CEEEEEEECCCHHHHHhHH-HHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 9999999999999999998 7999888764 4689999999999984
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+..++...+++..++ +++++||++|.|++++|+++++.
T Consensus 121 -------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 -------------REVTREEGLKFARKHNM-LFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -------------cccCHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHh
Confidence 34667788899998884 89999999999999999999875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-25 Score=171.60 Aligned_cols=151 Identities=32% Similarity=0.594 Sum_probs=128.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++....+ ...+.+.+..+.+.+||++|++.+..+++.++.++
T Consensus 10 ~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 73 (162)
T cd04123 10 RVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDA---------------- 73 (162)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccC----------------
Confidence 7999999999999999877777774444 45667778888999999999988888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|+..+..... +.|+++|+||+|+...
T Consensus 74 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 74 --------------------------------DGAILVYDITDADSFQKVK-KWIKELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 89888887654 6899999999999854
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..++...+++.+++ +++++||+++.|++++|+++.+.++
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~~~~l~~~~~ 162 (162)
T cd04123 121 ------------RVVSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKRMI 162 (162)
T ss_pred ------------cCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44666777888888884 7999999999999999999988753
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-26 Score=179.18 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=119.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.||++..+ ..+++..+.+.+||++|++.+..+++.+++++
T Consensus 9 ~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 68 (164)
T cd04162 9 GAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGS----------------- 68 (164)
T ss_pred CCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhC-----------------
Confidence 7999999999999989888899986432 34566678999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+. .|+..+.+..+++|+++|+||+|+.....
T Consensus 69 -------------------------------d~ii~V~D~t~~~s~~~~~-~~l~~~~~~~~~~piilv~NK~Dl~~~~~ 116 (164)
T cd04162 69 -------------------------------QGLIFVVDSADSERLPLAR-QELHQLLQHPPDLPLVVLANKQDLPAARS 116 (164)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCCCCCcEEEEEeCcCCcCCCC
Confidence 9999999999999999987 77777765556899999999999976532
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC------CCCHHHHHHHHHH
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT------QKGLKTVFDEAIR 210 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~------~~~v~~lf~~l~~ 210 (228)
..+. ....++..++++.+ ..++++||++ ++||+++|+.++.
T Consensus 117 ~~~i--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 117 VQEI--------HKELELEPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHH--------HHHhCChhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 1111 01123455666667 5789999888 9999999998864
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=179.20 Aligned_cols=153 Identities=29% Similarity=0.544 Sum_probs=129.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+. .+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 24 ~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 86 (211)
T PLN03118 24 GVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA---------------- 86 (211)
T ss_pred CCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC----------------
Confidence 79999999999998874 6777876555 35667788889999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++++|..+.+.|...+..+. .+.|++||+||+|+..
T Consensus 87 --------------------------------d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 87 --------------------------------QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999755777776543 3579999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. +.++.+++..++..+++ .|+++||+++.|++++|.++...+...
T Consensus 135 ~------------~~i~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 135 E------------RDVSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred c------------CccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 4 45777888888888884 899999999999999999999888653
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=172.85 Aligned_cols=155 Identities=28% Similarity=0.405 Sum_probs=118.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|.+.+.++ ...+.....+++..+.+.+||++|++.+...+..++..+
T Consensus 10 ~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a----------------- 71 (166)
T cd01893 10 GVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKA----------------- 71 (166)
T ss_pred CCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccC-----------------
Confidence 79999999999999997665443 333444456677889999999999987665555555666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|+.+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 72 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 72 -------------------------------NVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 9999999999999999986578888887767899999999999976432
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ....++...++..+. +.+++++||++|.|++++|..+.+.++.
T Consensus 121 ~----------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 121 Q----------AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred h----------hHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 0 001222333333332 2479999999999999999999998875
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=170.61 Aligned_cols=150 Identities=33% Similarity=0.600 Sum_probs=130.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++.+.+...+.++..+.+...+.+++..+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----------------- 71 (160)
T cd00876 9 GVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQG----------------- 71 (160)
T ss_pred CCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcC-----------------
Confidence 799999999999998988999998877777788888889999999999988776666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|...+..... ..|+++|+||+|+...
T Consensus 72 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 72 -------------------------------DGFILVYSITDRESFEEIK-GYREQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCccccc
Confidence 9999999999999999998 77777776654 7999999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++.+++..+++.++ .+++++||+++.|++++|++++..+
T Consensus 120 ------------~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 120 ------------RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred ------------ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHhhC
Confidence 4477788889999888 5899999999999999999998754
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=172.24 Aligned_cols=140 Identities=30% Similarity=0.506 Sum_probs=123.7
Q ss_pred hCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHH
Q psy8274 13 TNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVF 91 (228)
Q Consensus 13 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 91 (228)
.+.|.+.|.||++..+ .+.+.+++..+.+.||||+|++.+..+++.+++++
T Consensus 2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~a---------------------------- 53 (176)
T PTZ00099 2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDS---------------------------- 53 (176)
T ss_pred CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCC----------------------------
Confidence 3568889999997555 56788899999999999999999999999999998
Q ss_pred HHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccC
Q psy8274 92 DEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKL 170 (228)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 170 (228)
|++|+|||+++++||+.+. .|+..+.... ...|++|||||+||.+.
T Consensus 54 --------------------d~~ilv~D~t~~~sf~~~~-~w~~~i~~~~~~~~piilVgNK~DL~~~------------ 100 (176)
T PTZ00099 54 --------------------AAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL------------ 100 (176)
T ss_pred --------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc------------
Confidence 9999999999999999997 8998887654 57899999999999754
Q ss_pred ccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 171 APITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ .|+|+||++|.||+++|++++..+..
T Consensus 101 ~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 RKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45788889999998885 79999999999999999999998854
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=174.79 Aligned_cols=153 Identities=27% Similarity=0.440 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+.+.+...+.+.+..+.+.+||++|+..+..++..++.++
T Consensus 9 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~a----------------- 71 (198)
T cd04147 9 GVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNS----------------- 71 (198)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcC-----------------
Confidence 799999999999999988888888766667788888889999999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+.... .+.|++||+||+|+...
T Consensus 72 -------------------------------d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 72 -------------------------------DAFALVYAVDDPESFEEVE-RLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 9999999999999999997 8888777654 36999999999999653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +.+...+...... .++ .+++++||++|.|++++|+++++.+..
T Consensus 120 ~-----------~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 120 E-----------RQVPAKDALSTVELDWN-CGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred c-----------ccccHHHHHHHHHhhcC-CcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence 1 3344444444443 345 589999999999999999999998764
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-25 Score=172.93 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=116.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.||++..+. . ++...+.+.+||++|+..+...+..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~-~~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~a----------------- 67 (169)
T cd04158 9 GAGKTTILFKLKQDEFM-QPIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNT----------------- 67 (169)
T ss_pred CCCHHHHHHHHhcCCCC-CcCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccC-----------------
Confidence 79999999999998776 47788765443 2 333457899999999998888888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 68 -------------------------------d~ii~V~D~s~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 68 -------------------------------QAVVFVVDSSHRDRVSEAH-SELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred -------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 9999999999999999997 7777665432 45899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC-----CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG-----AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
++.+++..+++..+ ...++++||++|.||+++|+++.+.+...
T Consensus 116 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 116 --------------LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred --------------CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 45555655554322 13688999999999999999999877653
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-25 Score=174.39 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++..+. .+ +...+.+.+||++|++.+..+++.++.++
T Consensus 19 ~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a----------------- 77 (168)
T cd04149 19 AAGKTTILYKLKLGQSV-TTIPTVGFNVE-TV--TYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 77 (168)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcccceE-EE--EECCEEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988875 46788765443 22 23458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHh-hh-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVR-HH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~-~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+. .. ..++|++||+||+|+.+.
T Consensus 78 -------------------------------~~ii~v~D~t~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 78 -------------------------------QGLIFVVDSADRDRIDEAR-QELHRIINDREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred -------------------------------CEEEEEEeCCchhhHHHHH-HHHHHHhcCHhhcCCcEEEEEECcCCccC
Confidence 9999999999999999987 5554443 33 257899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH---h-CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE---I-GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
++.+++..+++. . ...+++++||++|.||+++|.++.+
T Consensus 126 --------------~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 126 --------------MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred --------------CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 344445444321 1 1136899999999999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-25 Score=175.93 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=112.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|. .+.||++..+. . ++...+.+.+||++|++.++.++..+++++
T Consensus 27 ~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a----------------- 85 (181)
T PLN00223 27 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 85 (181)
T ss_pred CCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988886 56788865443 2 334458899999999999999999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|..+. .++..+.. . .++.|++||+||+|+.+.
T Consensus 86 -------------------------------~~iI~V~D~s~~~s~~~~~-~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 86 -------------------------------QGLIFVVDSNDRDRVVEAR-DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred -------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9999999999999999887 55555433 2 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-------ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-------VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...++ +.+.+++ ..++++||++|+||+++|+++...+.+
T Consensus 134 --------------~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 134 --------------MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred --------------CCHHH---HHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 22232 3333332 246689999999999999999988764
|
|
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=168.08 Aligned_cols=151 Identities=26% Similarity=0.473 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++..+.+...+.+|++.. ....+.+++..+.+.+||++|+..+...+..++..+
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~---------------- 80 (169)
T cd04114 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA---------------- 80 (169)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 799999999999888887778887543 345678889889999999999988877777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 81 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 81 --------------------------------NALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 89988877653 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+....+.+... .+++++||++|.|++++|+++.+.++
T Consensus 128 ------------~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~ 169 (169)
T cd04114 128 ------------REVSQQRAEEFSDAQD-MYYLETSAKESDNVEKLFLDLACRLI 169 (169)
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHhC
Confidence 3466666777777777 58999999999999999999998653
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=169.84 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=107.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.|. .+.||++..+. .+. ...+.+.+||++|++.+..++..+++++
T Consensus 10 ~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 68 (159)
T cd04150 10 AAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 68 (159)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 79999999999988887 57888765442 233 3458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHh-hhC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVR-HHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+. ... .+.|++|++||+|+.+.
T Consensus 69 -------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 69 -------------------------------QGLIFVVDSNDRERIGEAR-EELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 9999999999999999998 5555443 322 46899999999999753
Q ss_pred hHHHHHHhhccCccccHHHH-HHHH----HHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSMA----KEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~~----~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. ..++. ..+. +..+ ..++++||++|.||+++|+++.+
T Consensus 117 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 117 M--------------SAAEVTDKLGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred C--------------CHHHHHHHhCccccCCCC-EEEEEeeCCCCCCHHHHHHHHhc
Confidence 1 11111 1111 1123 35789999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=170.45 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=110.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.|. .+.||++..+. .+.. ..+.+.+||++|++.+..++..+++++
T Consensus 23 ~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~a----------------- 81 (175)
T smart00177 23 AAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNT----------------- 81 (175)
T ss_pred CCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCC-----------------
Confidence 79999999999988885 57788865543 2333 457899999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|+.+. .|+..+.. . ..+.|++||+||+|+.+.
T Consensus 82 -------------------------------d~ii~v~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 82 -------------------------------QGLIFVVDSNDRDRIDEAR-EELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999999999999999988 55555543 2 246899999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. +.++..... +... ..++++||++|.||+++|+++...+.
T Consensus 130 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 130 M--------------KAAEITEKLGLHSIRDRN-WYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred C--------------CHHHHHHHhCccccCCCc-EEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 1 122221111 1112 35778999999999999999987753
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=171.85 Aligned_cols=151 Identities=27% Similarity=0.481 Sum_probs=128.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++++.+.|...|.+|++..+. ..+..++..+.+.+||++|++.+..++..++..+
T Consensus 19 g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~---------------- 82 (215)
T PTZ00132 19 GVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKG---------------- 82 (215)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccC----------------
Confidence 79999999999999999999999976554 4556688889999999999998888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||++++.||..+. .|+..+....++.|+++++||+|+.+.
T Consensus 83 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~i~lv~nK~Dl~~~- 128 (215)
T PTZ00132 83 --------------------------------QCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR- 128 (215)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECccCccc-
Confidence 9999999999999999998 999998877778999999999998652
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ ...+++..+ ..++++||++|.|++++|.++++.++..
T Consensus 129 ------------~~~~~-~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 129 ------------QVKAR-QITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred ------------cCCHH-HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 22222 345667777 5899999999999999999999988754
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=172.14 Aligned_cols=146 Identities=19% Similarity=0.240 Sum_probs=110.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.|.. +.||++..+. . ++...+.+.+||++|++.+..++..+++++
T Consensus 27 ~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 85 (182)
T PTZ00133 27 AAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNT----------------- 85 (182)
T ss_pred CCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 799999999999888864 6788865543 2 333458899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH-hhh-CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV-RHH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l-~~~-~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++++|..+. .++..+ ... ..++|++||+||.|+.+.
T Consensus 86 -------------------------------d~iI~v~D~t~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 86 -------------------------------NGLIFVVDSNDRERIGDAR-EELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 9999999999999999987 444444 332 246899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++.... ++... ..++++||++|.|++++|+++.+.+.+
T Consensus 134 ~--------------~~~~i~~~l~~~~~~~~~-~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 134 M--------------STTEVTEKLGLHSVRQRN-WYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred C--------------CHHHHHHHhCCCcccCCc-EEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 1 11111111 11112 357799999999999999999987764
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=160.76 Aligned_cols=147 Identities=34% Similarity=0.627 Sum_probs=126.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|+..+..++..+++++
T Consensus 10 ~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 73 (159)
T cd00154 10 GVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGA---------------- 73 (159)
T ss_pred CCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888886555 45677778889999999999987777666666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++++..+. .|+..+.... ...|+++++||+|+...
T Consensus 74 --------------------------------d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 120 (159)
T cd00154 74 --------------------------------HGAILVYDITNRESFENLD-KWLKELKEYAPENIPIILVGNKIDLEDQ 120 (159)
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEccccccc
Confidence 9999999999999999998 8999888876 67999999999999733
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
.....++...++..++ .+++++||+++.|++++|.++.
T Consensus 121 ------------~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 121 ------------RQVSTEEAQQFAKENG-LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ------------ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHh
Confidence 3466778888888888 5899999999999999999986
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=168.97 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=116.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++..+.|... .||.+... ...+.+ ++..+.+.+|||+|++.+..++..+++.+
T Consensus 13 ~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~--------------- 76 (183)
T cd04152 13 SAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCT--------------- 76 (183)
T ss_pred CCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccC---------------
Confidence 7999999999999888754 67765333 333433 45678999999999998888888888877
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+.
T Consensus 77 ---------------------------------d~ii~v~D~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 77 ---------------------------------DGIVFVVDSVDVERMEEAK-TELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9999999999999999887 7777766543 468999999999986
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHH--hC---CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKE--IG---AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.. ...++...+... .+ ..+++++||++|.|++++|+++++.+...++
T Consensus 123 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 123 NA--------------LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred cc--------------CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 43 222333333221 11 1368999999999999999999998876544
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=169.37 Aligned_cols=137 Identities=23% Similarity=0.285 Sum_probs=112.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-----CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-----GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||+++|+.+.|.+.+.+|++..+. +.+.++ +..+.+++||++|++.+..+++.+|+++
T Consensus 10 gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a----------- 78 (202)
T cd04102 10 GVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV----------- 78 (202)
T ss_pred CCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC-----------
Confidence 79999999999999999999999976553 344553 5779999999999999999999999998
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-------------
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC------------- 141 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~------------- 141 (228)
|++|+|||+++++||+.+. .|+..+....
T Consensus 79 -------------------------------------d~iIlVyDvtn~~Sf~~l~-~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 79 -------------------------------------NGIILVHDLTNRKSSQNLQ-RWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred -------------------------------------CEEEEEEECcChHHHHHHH-HHHHHHHHhhccccccccccccc
Confidence 9999999999999999998 9999987631
Q ss_pred -------CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHH----HHHHHHHHhCCceEEEecccCCC
Q psy8274 142 -------PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP----QGLSMAKEIGAVKYLECSALTQK 199 (228)
Q Consensus 142 -------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~evSa~~~~ 199 (228)
.++|++|||||+|+.+.+ .++.+ ....+++.+| .+.++.++++..
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r------------~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEK------------ESSGNLVLTARGFVAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred cccccCCCCceEEEEEECccchhhc------------ccchHHHhhHhhhHHHhcC-CceEEEecCCcc
Confidence 368999999999997642 23333 2456678888 478888887543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=162.83 Aligned_cols=146 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|.++. +...+.||++.... .+....+.+.+||++|++.+..++..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~---~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 69 (162)
T cd04157 9 NSGKTTIINQLKPENAQSQIIVPTVGFNVE---SFEKGNLSFTAFDMSGQGKYRGLWEHYYKNI---------------- 69 (162)
T ss_pred CCCHHHHHHHHcccCCCcceecCccccceE---EEEECCEEEEEEECCCCHhhHHHHHHHHccC----------------
Confidence 799999999999876 46677788764322 2233457889999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
|++++|||++++.+|..+. .|+..+.+.. .+.|+++|+||+|+
T Consensus 70 --------------------------------d~ii~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~NK~Dl 116 (162)
T cd04157 70 --------------------------------QGIIFVIDSSDRLRLVVVK-DELELLLNHPDIKHRRVPILFFANKMDL 116 (162)
T ss_pred --------------------------------CEEEEEEeCCcHHHHHHHH-HHHHHHHcCcccccCCCCEEEEEeCccc
Confidence 9999999999999998887 6666664431 36899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH--HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK--EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.......+ ..+...+.. ... .+++++||++|.|++++|+++.+
T Consensus 117 ~~~~~~~~-----------~~~~l~~~~~~~~~-~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 117 PDALTAVK-----------ITQLLGLENIKDKP-WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cCCCCHHH-----------HHHHhCCccccCce-EEEEEeeCCCCCchHHHHHHHhc
Confidence 75421000 011111111 112 36899999999999999999865
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=167.18 Aligned_cols=149 Identities=16% Similarity=0.248 Sum_probs=113.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++ +...+.||++.. ...+.. ..+.+.+||++|+..++.++..+++++
T Consensus 9 ~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a----------------- 67 (167)
T cd04161 9 NAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEA----------------- 67 (167)
T ss_pred CCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCC-----------------
Confidence 79999999999976 777888998754 233443 347889999999999888888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.+.. .+.|++||+||+|+.+.
T Consensus 68 -------------------------------~~ii~V~D~s~~~s~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 68 -------------------------------HGLVFVVDSSDDDRVQEVK-EILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred -------------------------------CEEEEEEECCchhHHHHHH-HHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 9999999999999999997 7877776543 47899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCC------CCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQ------KGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~------~~v~~lf~~l~~ 210 (228)
.+..+. +...++..++++.+. ..++++||++| .|+++.|+|+..
T Consensus 116 ~~~~~i--------~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 116 LLGADV--------IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCHHHH--------HHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 322111 111122233433332 46788999998 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-23 Score=162.53 Aligned_cols=142 Identities=17% Similarity=0.240 Sum_probs=108.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|++..+ ..+.+|++.. ...+.++ .+.+.+||++|++.++.++..++.++
T Consensus 24 ~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~----------------- 82 (173)
T cd04154 24 NAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFEST----------------- 82 (173)
T ss_pred CCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 7999999999998755 4566777632 2334444 37889999999998877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 83 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 83 -------------------------------DALIWVVDSSDRLRLDDCK-RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 9999999999999999887 666665432 257999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
...++...+.. ..+ .+++++||++|.|++++|++++.
T Consensus 131 --------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 131 --------------LSEEEIREALELDKISSHH-WRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred --------------CCHHHHHHHhCccccCCCc-eEEEeccCCCCcCHHHHHHHHhc
Confidence 12333333332 223 58999999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=159.98 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=106.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+.. +.||++..+. .+.++ .+.+.+||++|+..+...+..++.++
T Consensus 25 ~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 83 (174)
T cd04153 25 NAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNT----------------- 83 (174)
T ss_pred CCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcC-----------------
Confidence 799999999999988875 5677765543 23333 47899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|.... .++..+.+.. .+.|+++++||+|+...
T Consensus 84 -------------------------------d~vi~V~D~s~~~~~~~~~-~~l~~~~~~~~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 84 -------------------------------DAVILVIDSTDRERLPLTK-EELYKMLAHEDLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence 9999999999999998887 4444443332 46899999999998753
Q ss_pred hHHHHHHhhccCccccHHHH-HHH----HHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSM----AKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~----~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.+.++. ..+ ++..+ .+++++||++|.||+++|+++.+
T Consensus 132 --------------~~~~~i~~~l~~~~~~~~~-~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 132 --------------MTPAEISESLGLTSIRDHT-WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --------------CCHHHHHHHhCcccccCCc-eEEEecccCCCCCHHHHHHHHhc
Confidence 111221 111 12234 37999999999999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=171.17 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=110.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-------------CeEEeeeeeeCCCCcccccCCCCccccccch
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-------------GKPINLGLWDTAGQEDYDRLRPLSYPQTGLS 66 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 66 (228)
|||||||+++|+.+.|...+.+|++..+. +.+.++ ++.+.++|||++|++.|..+++.+|+++
T Consensus 31 GVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~A--- 107 (334)
T PLN00023 31 GVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQI--- 107 (334)
T ss_pred CCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCC---
Confidence 79999999999999999999999976653 455554 3578999999999999999999999998
Q ss_pred hHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----
Q psy8274 67 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----- 141 (228)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----- 141 (228)
+++|+|||+++++||+.+. .|+..+....
T Consensus 108 ---------------------------------------------dgiILVyDITdr~SFenL~-kWl~eI~~~~~~s~p 141 (334)
T PLN00023 108 ---------------------------------------------NGVIFVHDLSQRRTKTSLQ-KWASEVAATGTFSAP 141 (334)
T ss_pred ---------------------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcccccc
Confidence 9999999999999999998 9999998753
Q ss_pred --------CCCCEEEEEeCCCCCCchHHHHHHhhccCcc---ccHHHHHHHHHHhCCceE
Q psy8274 142 --------PSTPIILVGTKLDLRDDKETIEKLKEKKLAP---ITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 142 --------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~ 190 (228)
.++|++|||||+||..... .+. +..+++..+++++|+.+.
T Consensus 142 ~~s~~~~~~~ipIILVGNK~DL~~~~~---------~r~~s~~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 142 LGSGGPGGLPVPYIVIGNKADIAPKEG---------TRGSSGNLVDAARQWVEKQGLLPS 192 (334)
T ss_pred cccccccCCCCcEEEEEECcccccccc---------ccccccccHHHHHHHHHHcCCCcc
Confidence 2489999999999965311 022 468899999999886543
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-22 Score=155.07 Aligned_cols=143 Identities=23% Similarity=0.299 Sum_probs=106.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+.. +.||++..+. .+.. +..+.+.+||++|+..+...+..++..+
T Consensus 9 ~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~----------------- 68 (160)
T cd04156 9 SAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENT----------------- 68 (160)
T ss_pred CCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 799999999999998864 4677654332 2333 3457899999999988877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.+.. .+.|+++|+||+|+...
T Consensus 69 -------------------------------~~iv~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 69 -------------------------------DGLVYVVDSSDEARLDESQ-KELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 9999999999999999887 6666554432 47999999999999653
Q ss_pred hHHHHHHhhccCccccHHHHH------HHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGL------SMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. ..++.. .++...+ .+++++||++|.||+++|+++.+
T Consensus 117 ~--------------~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 117 L--------------TAEEITRRFKLKKYCSDRD-WYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred c--------------CHHHHHHHcCCcccCCCCc-EEEEecccccCCChHHHHHHHhc
Confidence 1 111111 2222233 47999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=155.33 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=104.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+. .+.||++..+. .++...+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 67 (158)
T cd04151 9 NAGKTTILYRLQLGEVV-TTIPTIGFNVE---TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNT----------------- 67 (158)
T ss_pred CCCHHHHHHHHccCCCc-CcCCccCcCeE---EEEECCEEEEEEECCCCHHHHHHHHHHhcCC-----------------
Confidence 79999999999888775 45677654432 2334457899999999998888888777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++....+.|...+... ..+.|+++|+||+|+.+..
T Consensus 68 -------------------------------~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 68 -------------------------------DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence 99999999999999887763444444433 2479999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
...+..... ...+ .+++++||++|.|++++|+++++
T Consensus 117 --------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 --------------SEAEISEKLGLSELKDRT-WSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred --------------CHHHHHHHhCccccCCCc-EEEEEeeccCCCCHHHHHHHHhc
Confidence 111111111 1112 36999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=154.86 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=105.4
Q ss_pred CCChhhhHHhhhhCCC------CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|+|||||++++..... ...+.+|++..+. .+.++ .+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~----------- 74 (167)
T cd04160 9 NAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAEC----------- 74 (167)
T ss_pred CCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCC-----------
Confidence 7999999999986432 2344556544442 33444 47889999999998877777667776
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTK 152 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK 152 (228)
|++++|+|+++++++.... .|+..+.+.. .+.|++||+||
T Consensus 75 -------------------------------------~~~v~vvd~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~NK 116 (167)
T cd04160 75 -------------------------------------HAIIYVIDSTDRERFEESK-SALEKVLRNEALEGVPLLILANK 116 (167)
T ss_pred -------------------------------------CEEEEEEECchHHHHHHHH-HHHHHHHhChhhcCCCEEEEEEc
Confidence 9999999999999998887 6666655432 47999999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHHh------CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI------GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+|+... ...++...+.+.. ...+++++||++|.|++++|+++.+
T Consensus 117 ~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 117 QDLPDA--------------LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccccC--------------CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 998653 2223333332221 1257999999999999999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.8e-22 Score=152.69 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=107.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++++.+ ..+.+|++..+. .+.++ .+.+.+||++|++.+..++..++..+
T Consensus 9 ~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~----------------- 67 (158)
T cd00878 9 GAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENT----------------- 67 (158)
T ss_pred CCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccC-----------------
Confidence 7999999999998874 356666654332 23333 47899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 68 -------------------------------~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 68 -------------------------------NGIIFVVDSSDRERIEEAK-EELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 9999999999999999987 6666655432 47899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
. +.++...... ... .+++++||++|.|++++|++++.
T Consensus 116 ~--------------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 116 L--------------SVSELIEKLGLEKILGRR-WHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred c--------------CHHHHHHhhChhhccCCc-EEEEEeeCCCCCCHHHHHHHHhh
Confidence 2 1222222221 123 57999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=157.17 Aligned_cols=144 Identities=19% Similarity=0.331 Sum_probs=109.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||++|+..+..++..++.++
T Consensus 29 ~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~a----------------- 87 (190)
T cd00879 29 NAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEV----------------- 87 (190)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccC-----------------
Confidence 79999999999988774 567776543 23455555 5788999999988777777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|+|+++..+|.... .|+..+.... .+.|+++++||+|+...
T Consensus 88 -------------------------------d~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 88 -------------------------------DGIVFLVDAADPERFQESK-EELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 9999999999999998877 6666665432 46899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH--------------h-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE--------------I-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.++...+.+. . ...+++++||++|.|++++|+++.+.
T Consensus 136 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 136 --------------VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred --------------cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 334444444432 1 11468999999999999999999865
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-24 Score=163.19 Aligned_cols=153 Identities=24% Similarity=0.411 Sum_probs=142.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+|||||+++||+.+-|...|..|++.++ ...+.+++..+...+||++|++.+..+...||+++
T Consensus 30 ~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga---------------- 93 (246)
T KOG4252|consen 30 SVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA---------------- 93 (246)
T ss_pred ccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc----------------
Confidence 6999999999999999999999997766 56778888889999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+.++||.-||+.||+... .|++.+......+|.++|-||+||.+.
T Consensus 94 --------------------------------qa~vLVFSTTDr~SFea~~-~w~~kv~~e~~~IPtV~vqNKIDlved- 139 (246)
T KOG4252|consen 94 --------------------------------QASVLVFSTTDRYSFEATL-EWYNKVQKETERIPTVFVQNKIDLVED- 139 (246)
T ss_pred --------------------------------cceEEEEecccHHHHHHHH-HHHHHHHHHhccCCeEEeeccchhhHh-
Confidence 9999999999999999999 999999999999999999999999986
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+++..+++.+++.+.+ +++.+|++...||..+|.-++++..+.
T Consensus 140 -----------s~~~~~evE~lak~l~~-RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 140 -----------SQMDKGEVEGLAKKLHK-RLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred -----------hhcchHHHHHHHHHhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 56999999999999995 899999999999999999999887654
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-21 Score=155.46 Aligned_cols=169 Identities=31% Similarity=0.447 Sum_probs=132.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|..+.|...+.+|++..+.. .....+..+.+.+|||+|++.++.+++.++.++
T Consensus 15 g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~---------------- 78 (219)
T COG1100 15 GVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA---------------- 78 (219)
T ss_pred CccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC----------------
Confidence 799999999999999999999998776654 444455588999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..++..+.+.|...+...+ +..|+++|+||+|+...
T Consensus 79 --------------------------------~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 79 --------------------------------NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred --------------------------------CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 999999999997777777669999999887 47999999999999987
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEeccc--CCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSAL--TQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~--~~~~v~~lf~~l~~~i~~~~~ 217 (228)
............+..........+... ....++++|++ .+.+|.++|.++++.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 554433332211233333333333333 22449999999 999999999999999975443
|
|
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=154.35 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=105.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++..+.+. .+.||.+... ..+.+++ +.+.+||++|+..+..++..++.++
T Consensus 27 ~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~a----------------- 85 (184)
T smart00178 27 NAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEV----------------- 85 (184)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 79999999999988775 3455554322 2233333 6789999999998888888888877
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|++++.++.... .++..+.+. ..+.|+++|+||+|+...
T Consensus 86 -------------------------------d~ii~vvD~~~~~~~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 86 -------------------------------NGIVYLVDAYDKERFAESK-RELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred -------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999998887 555555432 247899999999998653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----------HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----------EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.++...... ......++++||++|.|++++++|+..+
T Consensus 134 --------------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 134 --------------ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred --------------CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 22222222111 1123469999999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=147.09 Aligned_cols=148 Identities=20% Similarity=0.286 Sum_probs=107.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.+..|...+.||++..+.. +..+ .+.+.+||++|+..+..++..++..+
T Consensus 9 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~----------------- 68 (159)
T cd04159 9 NSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVTLKVWDLGGQPRFRSMWERYCRGV----------------- 68 (159)
T ss_pred CCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEEEEEEECCCCHhHHHHHHHHHhcC-----------------
Confidence 799999999999999998999988655432 2223 37899999999988877777677666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++..++.... .|+..+... . .+.|+++|+||+|+...
T Consensus 69 -------------------------------d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 69 -------------------------------NAIVYVVDAADRTALEAAK-NELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999998876 555444332 2 46899999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
....+...... .......+ .+++++||++|.|++++|+++.+
T Consensus 117 ~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 117 LSVDELIEQMN---------LKSITDRE-VSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cCHHHHHHHhC---------cccccCCc-eEEEEEEeccCCChHHHHHHHhh
Confidence 21111100000 00001122 47899999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-21 Score=149.72 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=102.8
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCcee------eeccc-ee--EEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTV------FDNYS-AN--VMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~------~~~~~-~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|||||||+++|++.. +...+.++. +.++. .. +.+ ++..+.+.+|||+|++.+...+..++.
T Consensus 10 ~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (179)
T cd01890 10 DHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLA 89 (179)
T ss_pred CCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHH
Confidence 799999999999742 333333332 11221 11 222 567788999999999988776666666
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++|+|||+++..++.... .|.... .
T Consensus 90 ~a------------------------------------------------d~~i~v~D~~~~~~~~~~~-~~~~~~-~-- 117 (179)
T cd01890 90 AC------------------------------------------------EGALLLVDATQGVEAQTLA-NFYLAL-E-- 117 (179)
T ss_pred hc------------------------------------------------CeEEEEEECCCCccHhhHH-HHHHHH-H--
Confidence 66 9999999999987777665 554322 2
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc--eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV--KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.++|+++|+||+|+.+.. .......+++.+++. .++++||++|.|++++|+++...+.
T Consensus 118 ~~~~iiiv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 118 NNLEIIPVINKIDLPSAD--------------PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred cCCCEEEEEECCCCCcCC--------------HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 368999999999986531 111233455555642 4899999999999999999998763
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=150.88 Aligned_cols=144 Identities=23% Similarity=0.341 Sum_probs=109.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||++++..+.+. .+.||.+.... .+..++ +.+.+||++|+..++.+|+.++.++
T Consensus 24 ~sGKTtll~~l~~~~~~-~~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~----------------- 82 (175)
T PF00025_consen 24 GSGKTTLLNRLKNGEIS-ETIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNA----------------- 82 (175)
T ss_dssp TSSHHHHHHHHHSSSEE-EEEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTE-----------------
T ss_pred ccchHHHHHHhhhcccc-ccCcccccccc-eeeeCc--EEEEEEeccccccccccceeecccc-----------------
Confidence 79999999999987654 46677654432 334444 6789999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|.|.+|.+.+.... ..+..+... . .+.|+++++||+|+.+.
T Consensus 83 -------------------------------~~iIfVvDssd~~~l~e~~-~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 83 -------------------------------DGIIFVVDSSDPERLQEAK-EELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp -------------------------------SEEEEEEETTGGGGHHHHH-HHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred -------------------------------ceeEEEEecccceeecccc-cchhhhcchhhcccceEEEEeccccccCc
Confidence 9999999999999999887 444444432 2 47999999999998864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH------HhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK------EIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
. +.++...... ... ..++.+||.+|+|+.+.|+|+.++|
T Consensus 131 ~--------------~~~~i~~~l~l~~l~~~~~-~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 131 M--------------SEEEIKEYLGLEKLKNKRP-WSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp S--------------THHHHHHHTTGGGTTSSSC-EEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred c--------------hhhHHHhhhhhhhcccCCc-eEEEeeeccCCcCHHHHHHHHHhcC
Confidence 2 2222222211 123 5689999999999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=144.71 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=98.2
Q ss_pred CCChhhhHHhhhhCCCCCC-CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCC-ccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGE-YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL-SYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+... +..+..+.....+ +...+.+.+|||||+.... .+.. .+... .+. ++
T Consensus 10 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~--~~~----~~---- 76 (168)
T cd01897 10 NVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRP-LEERNTIEMQ--AIT----AL---- 76 (168)
T ss_pred CCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCcc-ccCCchHHHH--HHH----HH----
Confidence 7999999999998876422 2221111111111 2234789999999985421 1110 00000 000 00
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH--HHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF--ENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~--~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
. ...|++++|+|+++..++ .... .|+..+.....+.|+++|+||+|+.
T Consensus 77 ------------------~-----------~~~d~~l~v~d~~~~~~~~~~~~~-~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 77 ------------------A-----------HLRAAVLFLFDPSETCGYSLEEQL-SLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred ------------------H-----------hccCcEEEEEeCCcccccchHHHH-HHHHHHHhhcCcCCeEEEEEccccC
Confidence 0 001899999999988764 5554 6788877665679999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+... +. +...+.+..+ .+++++||++|.|++++|+++.+.++
T Consensus 127 ~~~~------------~~--~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 127 TFED------------LS--EIEEEEELEG-EEVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred chhh------------HH--HHHHhhhhcc-CceEEEEecccCCHHHHHHHHHHHhC
Confidence 6432 11 1334444444 58999999999999999999998764
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-21 Score=145.63 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=62.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|||++++.++... .|...+ ..|+++|+||+|+.+. ....+++..+++..+..+++
T Consensus 64 d~vilv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 64 DVIALVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEA-------------DVDIERAKELLETAGAEPIF 123 (142)
T ss_pred CEEEEEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCc-------------ccCHHHHHHHHHHcCCCcEE
Confidence 999999999999998653 454332 2499999999999752 24556677888888766899
Q ss_pred EecccCCCCHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~ 209 (228)
++||++|.|++++|+++.
T Consensus 124 ~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 124 EISSVDEQGLEALVDYLN 141 (142)
T ss_pred EEecCCCCCHHHHHHHHh
Confidence 999999999999999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-20 Score=143.66 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=117.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+||||+++++..+.+... .||++.... .+.-+.+.+.+||++||++++++|.+||.+.
T Consensus 27 ~AGKTTILykLk~~E~vtt-vPTiGfnVE---~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t----------------- 85 (181)
T KOG0070|consen 27 AAGKTTILYKLKLGEIVTT-VPTIGFNVE---TVEYKNISFTVWDVGGQEKLRPLWKHYFQNT----------------- 85 (181)
T ss_pred CCCceeeeEeeccCCcccC-CCcccccee---EEEEcceEEEEEecCCCcccccchhhhccCC-----------------
Confidence 7899999999999988755 999987665 2233468899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++|||.|.+|++.+..+.+++...+.+.. ...|+++.+||.|+...-
T Consensus 86 -------------------------------~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 86 -------------------------------QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred -------------------------------cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 999999999999999999867666666654 579999999999998763
Q ss_pred HHHHHHhhccCccccHHHHHHHHHH-----hCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKE-----IGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ ..+....... .. ..+-.++|.+|+|+.+.++|+...+..
T Consensus 135 s--------------~~ei~~~L~l~~l~~~~-w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 135 S--------------AAEITNKLGLHSLRSRN-WHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred C--------------HHHHHhHhhhhccCCCC-cEEeeccccccccHHHHHHHHHHHHhc
Confidence 3 2222222111 22 356778999999999999999988764
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=139.62 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=67.2
Q ss_pred ceEEEEEecCCh-hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-C
Q psy8274 112 DVFQICFSLVNP-ASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-G 186 (228)
Q Consensus 112 d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~ 186 (228)
|++++|+|++++ .+++.+. .|.+.+.... ...|+++|+||+|+..... ..+....+.+.. +
T Consensus 80 d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~ 145 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEE-------------LFELLKELLKELWG 145 (170)
T ss_pred CEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchh-------------hHHHHHHHHhhCCC
Confidence 999999999999 7998887 8888887764 2689999999999976432 122333444443 4
Q ss_pred CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+++++||+++.|++++|+++.+.
T Consensus 146 -~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 146 -KPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -CCEEEEecCCCCCHHHHHHHHHhh
Confidence 579999999999999999999864
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=135.72 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|.+.. .+...||.+-... .+..+.+.+.+||++||..++..|+.||.++
T Consensus 26 NsGKTti~~kl~~~~-~~~i~pt~gf~Ik---tl~~~~~~L~iwDvGGq~~lr~~W~nYfest----------------- 84 (185)
T KOG0073|consen 26 NSGKTTIVKKLLGED-TDTISPTLGFQIK---TLEYKGYTLNIWDVGGQKTLRSYWKNYFEST----------------- 84 (185)
T ss_pred CCCchhHHHHhcCCC-ccccCCccceeeE---EEEecceEEEEEEcCCcchhHHHHHHhhhcc-----------------
Confidence 799999999998766 3455566543222 3334558999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
||+|+|+|+.|+..++.....+...+...+ -..|++|++||.|+...-
T Consensus 85 -------------------------------dglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 85 -------------------------------DGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred -------------------------------CeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 999999999999999998844444444333 368999999999998431
Q ss_pred HHHHHHhhccCcccc-HHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPIT-YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... .+. .-+...+++.+. ++.+-||+.+|+++.+.|+|++..+..
T Consensus 134 ~~~---------~i~~~~~L~~l~ks~~-~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 134 SLE---------EISKALDLEELAKSHH-WRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CHH---------HHHHhhCHHHhccccC-ceEEEEeccccccHHHHHHHHHHHHHH
Confidence 100 011 112334445566 589999999999999999999998875
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-19 Score=134.48 Aligned_cols=146 Identities=35% Similarity=0.479 Sum_probs=110.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++++.+.+...+.++++..+. ..+..++..+.+.+||++|+..+..++...+..+
T Consensus 11 ~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 74 (161)
T TIGR00231 11 NVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV---------------- 74 (161)
T ss_pred CCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh----------------
Confidence 79999999999999887777777755554 3456777778899999999888877666555555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
++++.++|++.. .++......|...+.+... +.|+++|+||+|+..
T Consensus 75 --------------------------------~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 75 --------------------------------ESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred --------------------------------hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 899999998877 6676655456666666554 789999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l 208 (228)
.. ... +........+..+++++||++|.|++++|.++
T Consensus 123 ~~-------------~~~-~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 123 AK-------------LKT-HVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ch-------------hhH-HHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 41 222 22233333444689999999999999999886
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=141.08 Aligned_cols=140 Identities=21% Similarity=0.303 Sum_probs=100.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++++.+..+. .+.+|.+..+ ..+..++ ..+.+||++|+..+...+..++..+
T Consensus 24 g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~----------------- 82 (173)
T cd04155 24 NAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENT----------------- 82 (173)
T ss_pred CCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCC-----------------
Confidence 79999999999987653 3556655322 2334454 6789999999887766665556665
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++..++.... .++..+... ..++|+++++||+|+.+.
T Consensus 83 -------------------------------~~ii~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 83 -------------------------------DCLIYVIDSADKKRLEEAG-AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 9999999999999998876 454444332 246999999999998754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCC-------ceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGA-------VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.+ . ..+.+.+++ .+++++||++|.|++++|+|+++
T Consensus 131 ~~--------------~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 131 AP--------------A---EEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CC--------------H---HHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 21 1 112222221 35789999999999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=134.77 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=99.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCce-eeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPT-VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++.+..+...+.++ ..+.....+.+++ ..+.+|||||+..+...... ..+....
T Consensus 6 ~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~------~~~~~~~-------- 69 (158)
T cd01879 6 NVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSED------EKVARDF-------- 69 (158)
T ss_pred CCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChh------HHHHHHH--------
Confidence 79999999999987644333333 3333445666676 46899999999776542110 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+ ...++|++++|+|++++++.. .|...+... ++|+++|+||+|+.+..
T Consensus 70 -------------------~-------~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 70 -------------------L-------LGEKPDLIVNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKR 117 (158)
T ss_pred -------------------h-------cCCCCcEEEEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhcccc
Confidence 0 001229999999999865533 333344333 68999999999997642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.. +...+.+.++ .+++++||+++.|++++|+++.+.+
T Consensus 118 ------------~~~~-~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 118 ------------GIKI-DLDKLSELLG-VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------------cchh-hHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 1222 2456677778 4899999999999999999998753
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-19 Score=137.73 Aligned_cols=143 Identities=19% Similarity=0.165 Sum_probs=90.6
Q ss_pred CCChhhhHHhhhhC---CCCCCCCc--eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTN---AFPGEYIP--TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+++|++. .+...+.+ |+...+ ..+.+.+ ...+.+|||||++.+.......+..+
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~a------------ 75 (164)
T cd04171 10 DHGKTTLIKALTGIETDRLPEEKKRGITIDLGF-AYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGI------------ 75 (164)
T ss_pred CCCHHHHHHHHhCcccccchhhhccCceEEeee-EEEEecC-CcEEEEEECCChHHHHHHHHhhhhcC------------
Confidence 79999999999953 34333333 222222 2334432 35789999999987654333334444
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeC
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTK 152 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK 152 (228)
|++++|+|+++ +.++..+. .+... ...|+++|+||
T Consensus 76 ------------------------------------d~ii~V~d~~~~~~~~~~~~~~-----~~~~~-~~~~~ilv~NK 113 (164)
T cd04171 76 ------------------------------------DLVLLVVAADEGIMPQTREHLE-----ILELL-GIKRGLVVLTK 113 (164)
T ss_pred ------------------------------------CEEEEEEECCCCccHhHHHHHH-----HHHHh-CCCcEEEEEEC
Confidence 99999999987 44443332 22222 23499999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHH---hCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKE---IGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+|+...... .....+...+.+. .+ .+++++||+++.|++++|+.+..
T Consensus 114 ~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 114 ADLVDEDWL----------ELVEEEIRELLAGTFLAD-APIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ccccCHHHH----------HHHHHHHHHHHHhcCcCC-CcEEEEeCCCCcCHHHHHHHHhh
Confidence 999764210 1112233344433 24 58999999999999999998753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=148.06 Aligned_cols=159 Identities=20% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ...|..|........+.++ ....+.+||+||...-..
T Consensus 168 NaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~------------------------- 221 (335)
T PRK12299 168 NAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGAS------------------------- 221 (335)
T ss_pred CCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCC-------------------------
Confidence 7999999999997543 2344444433333344442 123578999999632110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~ 156 (228)
.+.++...|..+.+. ++++++|+|+++.++++.+. .|..++..+.+ +.|+++|+||+|+.
T Consensus 222 ---~~~gLg~~flrhie~-------------a~vlI~ViD~s~~~s~e~~~-~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 222 ---EGAGLGHRFLKHIER-------------TRLLLHLVDIEAVDPVEDYK-TIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred ---ccccHHHHHHHHhhh-------------cCEEEEEEcCCCCCCHHHHH-HHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 111222223333222 29999999999988999987 99999988753 68999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.... +..++...+++..+ .+++++||+++.||+++|+++.+.+...
T Consensus 285 ~~~~------------~~~~~~~~~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 285 DEEE------------EREKRAALELAALG-GPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred Cchh------------HHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 6422 22223444445555 5899999999999999999999887653
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=129.95 Aligned_cols=147 Identities=39% Similarity=0.686 Sum_probs=108.5
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++++.+... ...+.+|..+.+.......+....+.+||++|...+.......+..+
T Consensus 6 ~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~---------------- 69 (157)
T cd00882 6 GVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGA---------------- 69 (157)
T ss_pred CCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCC----------------
Confidence 7999999999998877 55666666444555666667778999999999887665544444555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhh--HHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKW--YPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~--~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|+|++++.++..+. .| ...........|+++|+||+|+..
T Consensus 70 --------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 70 --------------------------------DGIILVYDVTDRESFENVK-EWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhhccCCCcEEEEEecccccc
Confidence 9999999999999999887 55 222233345799999999999986
Q ss_pred chHHHHHHhhccCccccHHH-HHHHHHHhCCceEEEecccCCCCHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQ-GLSMAKEIGAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
... ..... ........+ .+++++|+..+.|++++++++.
T Consensus 117 ~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 117 ERV------------VSEEELAEQLAKELG-VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ccc------------hHHHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence 532 11111 223333334 6899999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=130.09 Aligned_cols=156 Identities=27% Similarity=0.349 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEE-cCeEEeeeeeeCCCCccc-ccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDY-DRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
+||||+|+.+++.+.. ..++.||++|.|...+.. +|..-.+.++||.|-... ..+-.+|+..+
T Consensus 19 ~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a------------- 85 (198)
T KOG3883|consen 19 SVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA------------- 85 (198)
T ss_pred cccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC-------------
Confidence 6899999999996654 346889999999877765 466678999999998776 45667777777
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLD 154 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~D 154 (228)
|++++||+..|++||+.+. -+...|.++.+ .+||+++|||+|
T Consensus 86 -----------------------------------DafVLVYs~~d~eSf~rv~-llKk~Idk~KdKKEvpiVVLaN~rd 129 (198)
T KOG3883|consen 86 -----------------------------------DAFVLVYSPMDPESFQRVE-LLKKEIDKHKDKKEVPIVVLANKRD 129 (198)
T ss_pred -----------------------------------ceEEEEecCCCHHHHHHHH-HHHHHHhhccccccccEEEEechhh
Confidence 9999999999999999987 67777777654 489999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.++ +.++.+-++.||+.-. +..+|+++.+...+-+-|.-++..+..++.+
T Consensus 130 r~~p------------~~vd~d~A~~Wa~rEk-vkl~eVta~dR~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 130 RAEP------------REVDMDVAQIWAKREK-VKLWEVTAMDRPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred cccc------------hhcCHHHHHHHHhhhh-eeEEEEEeccchhhhhHHHHHHHhccCCccc
Confidence 9876 6689999999999888 6999999999999999999999998876553
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=130.96 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=95.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++.+.. +...+.++..+........++ ..+.+|||||...+.... ...+.+...
T Consensus 7 ~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~-------~~~~~~~~~------ 71 (157)
T cd01894 7 NVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGI-------SKEIREQAE------ 71 (157)
T ss_pred CCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHH-------HHHHHHHHH------
Confidence 799999999999765 334444544444444455555 578899999987654300 000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|+|..++.+.... .+...+... ..|+++|+||+|+...
T Consensus 72 --------------~~-------------~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~ 120 (157)
T cd01894 72 --------------LA-------------IEEADVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKE 120 (157)
T ss_pred --------------HH-------------HHhCCEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCCh
Confidence 00 0112999999999876655443 233344433 5999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. . .......++.+++++|+++|.|++++|+++++.+
T Consensus 121 ~~------------~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 121 ED------------E-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred HH------------H-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 32 1 1222345645789999999999999999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.5e-18 Score=133.57 Aligned_cols=154 Identities=23% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++..+ ...+..+..+.....+.++ + ..+.+||+||............. +.++
T Consensus 6 ~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~---~~~~---------- 70 (176)
T cd01881 6 NVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGN---QFLA---------- 70 (176)
T ss_pred CCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccH---HHHH----------
Confidence 7999999999998764 2344444433333334444 4 56799999997432111000000 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh------hhHHHHHHhhHHHHhhhC--------CCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP------ASFENVRAKWYPEVRHHC--------PST 144 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~------~s~~~~~~~~~~~l~~~~--------~~~ 144 (228)
.. ..+|++++|+|+++. .++..+. .|...+.... .+.
T Consensus 71 ---------------~~-------------~~~d~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 121 (176)
T cd01881 71 ---------------HI-------------RRADAILHVVDASEDDDIGGVDPLEDYE-ILNAELKLYDLETILGLLTAK 121 (176)
T ss_pred ---------------HH-------------hccCEEEEEEeccCCccccccCHHHHHH-HHHHHHHHhhhhhHHHHHhhC
Confidence 00 012999999999998 5787776 6666666443 368
Q ss_pred CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
|+++|+||+|+..... .............+ .+++++||+++.|++++++++...
T Consensus 122 p~ivv~NK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 122 PVIYVLNKIDLDDAEE------------LEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CeEEEEEchhcCchhH------------HHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999986532 11111222333334 579999999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-19 Score=131.97 Aligned_cols=152 Identities=20% Similarity=0.294 Sum_probs=119.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||||++...++.|.+...||++.... .+....+.+.+||.+||..++.+|..|++++
T Consensus 30 ~sGKtt~Vn~ia~g~~~edmiptvGfnmr---k~tkgnvtiklwD~gGq~rfrsmWerycR~v----------------- 89 (186)
T KOG0075|consen 30 NSGKTTLVNVIARGQYLEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRGV----------------- 89 (186)
T ss_pred cCCcceEEEEEeeccchhhhcccccceeE---EeccCceEEEEEecCCCccHHHHHHHHhhcC-----------------
Confidence 68999999999999999999999986555 5555668999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++++|.|..|++.+....+++...+.+.. ..+|+++.|||.|+...-
T Consensus 90 -------------------------------~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 90 -------------------------------SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred -------------------------------cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 999999999999998888755555555443 479999999999998763
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+...++..+..++ ... +.+|.+||+...|++.+..|++++-.
T Consensus 139 ~~~~li~rmgL~sit---------dRE-vcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 139 SKIALIERMGLSSIT---------DRE-VCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHhCccccc---------cce-EEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 322211111111111 112 46899999999999999999998654
|
|
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-19 Score=137.60 Aligned_cols=150 Identities=25% Similarity=0.371 Sum_probs=128.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeE-EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|.|||+++.|++.+.|...|.+|++......+ ..+...+.+..|||+|++.+..++..+|.+.
T Consensus 20 g~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~---------------- 83 (216)
T KOG0096|consen 20 GTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQG---------------- 83 (216)
T ss_pred cccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEec----------------
Confidence 68999999999999999999999977665443 3344479999999999999999999999988
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+.|++||++.+-++.++. .|...+.+.+.++||++.|||.|...+.
T Consensus 84 --------------------------------qcAiimFdVtsr~t~~n~~-rwhrd~~rv~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 84 --------------------------------QCAIIMFDVTSRFTYKNVP-RWHRDLVRVRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred --------------------------------ceeEEEeeeeehhhhhcch-HHHHHHHHHhcCCCeeeeccceeccccc
Confidence 8899999999999999998 9999999999999999999999988752
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...+...+-+... ..|+++||+++.|.+.-|.++.+++.-
T Consensus 131 --------------~k~k~v~~~rkkn-l~y~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 131 --------------VKAKPVSFHRKKN-LQYYEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred --------------cccccceeeeccc-ceeEEeecccccccccchHHHhhhhcC
Confidence 1223344555566 489999999999999999999998764
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.9e-18 Score=131.34 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=96.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|..+.+...+.++....+. ..+..+ +....+.+|||+|+..+..++...+..+
T Consensus 10 ~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~--------------- 74 (168)
T cd01887 10 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLT--------------- 74 (168)
T ss_pred CCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhc---------------
Confidence 79999999999998886654444432222 233333 2356789999999987766555444444
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++...-... ..+..+.. .+.|+++|+||+|+...
T Consensus 75 ---------------------------------d~il~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 75 ---------------------------------DIAILVVAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ---------------------------------CEEEEEEECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccc
Confidence 999999999885322221 11222333 36899999999998753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH----Hh-CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK----EI-GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~----~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... + +. .....+.. .+ ...+++++||++|.|++++|+++.+...
T Consensus 118 ~~~-~---------~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 118 NPE-R---------VK-NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cHH-H---------HH-HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 210 0 00 00111100 11 1247999999999999999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=139.66 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=87.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc-----------CCCCccc-cccchhH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR-----------LRPLSYP-QTGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~~~~~-~~~~~~~ 68 (228)
|||||||+++|.++.+...+.|++... ...+... .+.+|||+|...... .+..++. .+
T Consensus 19 ~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 88 (201)
T PRK04213 19 NVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNA----- 88 (201)
T ss_pred CCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhh-----
Confidence 799999999999888765555544221 2222222 588999999633221 1111111 00
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHH---------HHHhhHHHHhh
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFEN---------VRAKWYPEVRH 139 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~---------~~~~~~~~l~~ 139 (228)
..++++++|.|.++...+.. ....+...+..
T Consensus 89 ----------------------------------------~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (201)
T PRK04213 89 ----------------------------------------DRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE 128 (201)
T ss_pred ----------------------------------------hhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH
Confidence 01177788877754322210 00011222222
Q ss_pred hCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--------ceEEEecccCCCCHHHHHHHHHHH
Q psy8274 140 HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--------VKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.++|+++|+||+|+.... .+.+..+++.+++ .+++++||++| |++++|+++...
T Consensus 129 --~~~p~iiv~NK~Dl~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 129 --LGIPPIVAVNKMDKIKNR---------------DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred --cCCCeEEEEECccccCcH---------------HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence 379999999999997542 1233445555553 25899999999 999999999998
Q ss_pred hcC
Q psy8274 212 VLC 214 (228)
Q Consensus 212 i~~ 214 (228)
+..
T Consensus 191 ~~~ 193 (201)
T PRK04213 191 LHE 193 (201)
T ss_pred hcC
Confidence 654
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=137.74 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCChhhhHHhhhhCCCCCC--CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGE--YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++..+... +.+|.. .....+.+++. ..+.+|||+|...... . .+...
T Consensus 51 g~GKStLl~~l~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~i~Dt~G~~~~~~--~--------~~~~~-------- 110 (204)
T cd01878 51 NAGKSTLFNALTGADVYAEDQLFATLD-PTTRRLRLPDG-REVLLTDTVGFIRDLP--H--------QLVEA-------- 110 (204)
T ss_pred CCCHHHHHHHHhcchhccCCccceecc-ceeEEEEecCC-ceEEEeCCCccccCCC--H--------HHHHH--------
Confidence 7999999999998864322 223332 22233344443 3688999999743210 0 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
+...... ...+|++++|+|++++.++.... .|...+.... .+.|+++|+||+|+..
T Consensus 111 ------------~~~~~~~----------~~~~d~ii~v~D~~~~~~~~~~~-~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 111 ------------FRSTLEE----------VAEADLLLHVVDASDPDYEEQIE-TVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ------------HHHHHHH----------HhcCCeEEEEEECCCCChhhHHH-HHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 0000000 01129999999999999988876 6777776654 3689999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
... .. ......+ .+++++||+++.|++++|+++...+
T Consensus 168 ~~~------------~~-----~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 168 DEE------------LE-----ERLEAGR-PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred hHH------------HH-----HHhhcCC-CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 422 11 2233334 5799999999999999999998753
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=126.56 Aligned_cols=156 Identities=26% Similarity=0.482 Sum_probs=131.0
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
+|||||+-.|+++.+.+.+..+.+.++ .+++.+.|..+.+.|||.+|++.+....|..+.++
T Consensus 31 iGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~ds----------------- 93 (205)
T KOG1673|consen 31 IGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDS----------------- 93 (205)
T ss_pred cCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCc-----------------
Confidence 799999999999999888888887776 57889999999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc--
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD-- 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~-- 158 (228)
-+++|+||.|.++++..+. .||..-+..+...--|+||+|.|+.-.
T Consensus 94 -------------------------------vaIlFmFDLt~r~TLnSi~-~WY~QAr~~NktAiPilvGTKyD~fi~lp 141 (205)
T KOG1673|consen 94 -------------------------------VAILFMFDLTRRSTLNSIK-EWYRQARGLNKTAIPILVGTKYDLFIDLP 141 (205)
T ss_pred -------------------------------EEEEEEEecCchHHHHHHH-HHHHHHhccCCccceEEeccchHhhhcCC
Confidence 9999999999999999999 999998888765444678999996422
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+-++ .+ ..++.++++.++ .+.|++|+..+.||.++|.-+..++....
T Consensus 142 ~e~Q~--------~I-~~qar~YAk~mn-AsL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 142 PELQE--------TI-SRQARKYAKVMN-ASLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHH--------HH-HHHHHHHHHHhC-CcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 11111 12 234788888889 48999999999999999999999887543
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=153.77 Aligned_cols=160 Identities=17% Similarity=0.135 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+..|..+.....+.+++.. +.+|||+|......... +........+...
T Consensus 221 nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~------~~e~~~~~~~~~~-- 290 (472)
T PRK03003 221 NVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQAS------GHEYYASLRTHAA-- 290 (472)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccc------hHHHHHHHHHHHH--
Confidence 7999999999998764 3344455555566667777764 46899999743221100 0000000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...+|++++|||++++.++..+ .++..+.. .+.|++||+||+|+...
T Consensus 291 -----------------------------i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 291 -----------------------------IEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDE 337 (472)
T ss_pred -----------------------------HhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCh
Confidence 1123999999999999998887 45555544 37899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.... ....+...........+++++||++|.||+++|..+.+.+.
T Consensus 338 ~~~~----------~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 338 DRRY----------YLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred hHHH----------HHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2100 01111111111223358999999999999999999988663
|
|
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-19 Score=140.00 Aligned_cols=158 Identities=25% Similarity=0.376 Sum_probs=134.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||+++.+|+...|.-.|..|++.++. +....| ...+.+++||+.||+++-.+...+|+.+
T Consensus 35 ~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea--------------- 99 (229)
T KOG4423|consen 35 GVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEA--------------- 99 (229)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCC---------------
Confidence 79999999999999998889999988775 334444 4467899999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--C---CCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--P---STPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~---~~piilv~nK~ 153 (228)
.+..+|||+|..-+|+... +|.+.+.... + .+|+++.+|||
T Consensus 100 ---------------------------------~~~~iVfdvt~s~tfe~~s-kwkqdldsk~qLpng~Pv~~vllankC 145 (229)
T KOG4423|consen 100 ---------------------------------HGAFIVFDVTRSLTFEPVS-KWKQDLDSKLQLPNGTPVPCVLLANKC 145 (229)
T ss_pred ---------------------------------cceEEEEEccccccccHHH-HHHHhccCcccCCCCCcchheeccchh
Confidence 9999999999999999998 9999887642 1 36889999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
|..... ..........+++++|+..++|+|+|.+.|+.|+...+++.++....+
T Consensus 146 d~e~~a-----------~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 146 DQEKSA-----------KNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ccChHh-----------hhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccC
Confidence 988642 122245678899999999999999999999999999999999876544
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-17 Score=139.81 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ...|..|........+.+++ ...+.+||+||.......
T Consensus 167 naGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~------------------------ 221 (329)
T TIGR02729 167 NAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASE------------------------ 221 (329)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcc------------------------
Confidence 7999999999997653 23343333222223334433 256789999997432110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
+.++...|..+.+. ++++++|+|+++. .+++.+. .|..++..+. .+.|++||+||+
T Consensus 222 ----~~gLg~~flrhier-------------ad~ll~VvD~s~~~~~~~~e~l~-~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 222 ----GAGLGHRFLKHIER-------------TRVLLHLIDISPLDGRDPIEDYE-IIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ----cccHHHHHHHHHHh-------------hCEEEEEEcCccccccCHHHHHH-HHHHHHHHhhhhhccCCEEEEEeCc
Confidence 11122222222222 2999999999987 6787776 8888887764 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|+..... ..+....+++.++ .+++++||+++.|+++++.++.+.+
T Consensus 284 DL~~~~~-------------~~~~~~~l~~~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 284 DLLDEEE-------------LAELLKELKKALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCChHH-------------HHHHHHHHHHHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9976421 1223445555667 5899999999999999999998754
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-18 Score=135.43 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=96.5
Q ss_pred CCChhhhHHhhhh--CCCCCCC------------Cceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEY------------IPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|||||||+++|+. +.|...+ .++.+.++ .....++...+.+.+|||+|++.|...+..+++.+
T Consensus 12 ~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-- 89 (194)
T cd01891 12 DHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMV-- 89 (194)
T ss_pred CCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhc--
Confidence 7999999999997 5665443 11222222 23344555668899999999998877666666666
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|||+++.. +.... .++..+.. .++|
T Consensus 90 ----------------------------------------------d~~ilV~d~~~~~-~~~~~-~~~~~~~~--~~~p 119 (194)
T cd01891 90 ----------------------------------------------DGVLLLVDASEGP-MPQTR-FVLKKALE--LGLK 119 (194)
T ss_pred ----------------------------------------------CEEEEEEECCCCc-cHHHH-HHHHHHHH--cCCC
Confidence 9999999998742 22222 33443333 3689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------HhCCceEEEecccCCCCHHHH------HHHHHHHh
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------EIGAVKYLECSALTQKGLKTV------FDEAIRAV 212 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~evSa~~~~~v~~l------f~~l~~~i 212 (228)
+++|+||+|+..... ....++...+.. ..+ .+++++||++|.|+.+. +.+++.++
T Consensus 120 ~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~ 187 (194)
T cd01891 120 PIVVINKIDRPDARP-----------EEVVDEVFDLFIELGATEEQLD-FPVLYASAKNGWASLNLEDPSEDLEPLFDTI 187 (194)
T ss_pred EEEEEECCCCCCCCH-----------HHHHHHHHHHHHHhCCccccCc-cCEEEeehhccccccccccchhhHHHHHHHH
Confidence 999999999965321 011223333332 235 48999999999777433 44555555
Q ss_pred cCC
Q psy8274 213 LCP 215 (228)
Q Consensus 213 ~~~ 215 (228)
...
T Consensus 188 ~~~ 190 (194)
T cd01891 188 IEH 190 (194)
T ss_pred Hhc
Confidence 443
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=123.91 Aligned_cols=106 Identities=31% Similarity=0.522 Sum_probs=76.7
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|.+..+.. .+.++.+..+. ....+......+.+||++|++.+...+...+..+
T Consensus 9 g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~-------------- 74 (119)
T PF08477_consen 9 GVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKA-------------- 74 (119)
T ss_dssp TSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHS--------------
T ss_pred CCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcC--------------
Confidence 799999999999988761 12222233332 2445566766799999999987766555445555
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHH--hhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRA--KWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~--~~~~~l~~~~~~~piilv~nK~D 154 (228)
|++++|||+++++||..+.+ .|+..+.....++|++|||||.|
T Consensus 75 ----------------------------------d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 75 ----------------------------------DAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ----------------------------------CEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ----------------------------------cEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999999999852 46777776667899999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=130.77 Aligned_cols=151 Identities=17% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee--------------eccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF--------------DNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~--------------~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|+|||||++++++..+...+.++.. .... ....++.....+.+||++|+..+...+...+..+
T Consensus 9 ~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-- 86 (189)
T cd00881 9 DHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVS-- 86 (189)
T ss_pred CCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhc--
Confidence 7999999999998877544322221 0000 0111222246789999999876654444444444
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|++++.+.... .++..+.. .+.|
T Consensus 87 ----------------------------------------------d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~ 116 (189)
T cd00881 87 ----------------------------------------------DGAILVVDANEGVQPQTR--EHLRIARE--GGLP 116 (189)
T ss_pred ----------------------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHH--CCCC
Confidence 999999999987665443 34444444 4799
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-------------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-------------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++|+||+|+..+.... ....+.....+.. ...+++++||++|.|++++|.++...+
T Consensus 117 i~iv~nK~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 117 IIVAINKIDRVGEEDLE----------EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred eEEEEECCCCcchhcHH----------HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 99999999998632111 0111222222221 126899999999999999999999886
Q ss_pred c
Q psy8274 213 L 213 (228)
Q Consensus 213 ~ 213 (228)
.
T Consensus 187 ~ 187 (189)
T cd00881 187 P 187 (189)
T ss_pred C
Confidence 4
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=123.44 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=114.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++||||++.++..++.. ...||++-+.. .+..+.+.+.+||++|+++.+++|.+||.+.
T Consensus 27 ~aGKTtiLyKLkl~~~~-~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gt----------------- 85 (180)
T KOG0071|consen 27 AAGKTTILYKLKLGQSV-TTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 85 (180)
T ss_pred cCCceehhhHHhcCCCc-ccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCC-----------------
Confidence 68999999999987653 56788775554 3344568899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
.++|||.|..++...+.+++++...|.+.. .+.|+++.+||.|+.+..
T Consensus 86 -------------------------------qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 86 -------------------------------QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred -------------------------------ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 999999999999889888866666666553 468999999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...|...-. +... ++... .-..++||.+|+++.+-|.|+.....
T Consensus 135 ~pqei~d~l--------eLe~-~r~~~-W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 135 KPQEIQDKL--------ELER-IRDRN-WYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CHHHHHHHh--------cccc-ccCCc-cEeeccccccchhHHHHHHHHHhhcc
Confidence 433321111 1111 12222 34778999999999999999987543
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=145.54 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=100.8
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++... .....+|..+.+...+..++. .+.+|||+|...........-.. .......++
T Consensus 182 ~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~---~~~~~~~~~---- 252 (429)
T TIGR03594 182 NVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKY---SVLRTLKAI---- 252 (429)
T ss_pred CCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHH---HHHHHHHHH----
Confidence 7999999999997653 344455555555555666665 67889999987655433210000 000000001
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|+|++++.+.... .++..+... +.|+++|+||+|+...
T Consensus 253 ------------------------------~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~ 298 (429)
T TIGR03594 253 ------------------------------ERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKD 298 (429)
T ss_pred ------------------------------HhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCC
Confidence 122999999999998887765 444444443 6899999999999832
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
....+. + ..+........+..+++++||++|.|++++|+++.+...
T Consensus 299 ~~~~~~--------~-~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 299 EKTREE--------F-KKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHH--------H-HHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111111 0 011111111223368999999999999999999888654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=141.38 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=96.4
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|+|++..+.. ....|..+.....+..++. .+.+|||||... +..+...+.+.+ +.++
T Consensus 62 nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~-------~~~l--- 129 (339)
T PRK15494 62 NSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCA-------WSSL--- 129 (339)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHH-------HHHh---
Confidence 799999999999887642 1112222333344555554 578999999853 222211111100 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|.++ +|......|+..+... +.|+++|+||+|+.+
T Consensus 130 -------------------------------~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~ 174 (339)
T PRK15494 130 -------------------------------HSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES 174 (339)
T ss_pred -------------------------------hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc
Confidence 11299999999765 5555543566666544 567889999999864
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ...++..++...+ ...++++||++|.|++++|+++...+..
T Consensus 175 ~---------------~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 175 K---------------YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred c---------------cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 2 1234455555443 3579999999999999999999887654
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-17 Score=136.80 Aligned_cols=153 Identities=16% Similarity=0.056 Sum_probs=96.6
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH-hhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK-EIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (228)
|||||||+|++++..+. .....|+.+........++ ..+.+|||||........ ...|.. -..++
T Consensus 10 nvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l-------~~~~~~~~~~~l--- 77 (270)
T TIGR00436 10 NVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSL-------NRLMMKEARSAI--- 77 (270)
T ss_pred CCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchH-------HHHHHHHHHHHH---
Confidence 79999999999987653 2223344333222222222 468899999975431100 000100 00000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|+++..+.. . .++..+... +.|+++|+||+|+..
T Consensus 78 -------------------------------~~aDvvl~VvD~~~~~~~~--~-~i~~~l~~~--~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 78 -------------------------------GGVDLILFVVDSDQWNGDG--E-FVLTKLQNL--KRPVVLTRNKLDNKF 121 (270)
T ss_pred -------------------------------hhCCEEEEEEECCCCCchH--H-HHHHHHHhc--CCCEEEEEECeeCCC
Confidence 1229999999999887765 2 455555543 689999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... ..+....++...+..+++++||++|.|++++++.+.+.+..
T Consensus 122 ~~~-------------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 122 KDK-------------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred HHH-------------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 321 11233444554554579999999999999999999887643
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=148.53 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=95.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|+++.+. ....+.+ .+.....+.+++. .+.+|||+|.+...... .
T Consensus 48 nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~-----------~---------- 104 (472)
T PRK03003 48 NVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGL-----------Q---------- 104 (472)
T ss_pred CCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhH-----------H----------
Confidence 79999999999987642 1222322 3334445556664 47889999976311100 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.+..+.... ...+|++|+|||++++.++... .|...+... +.|+++|+||+|+...
T Consensus 105 ----------~~~~~~~~~~---------~~~aD~il~VvD~~~~~s~~~~--~i~~~l~~~--~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 105 ----------ASVAEQAEVA---------MRTADAVLFVVDATVGATATDE--AVARVLRRS--GKPVILAANKVDDERG 161 (472)
T ss_pred ----------HHHHHHHHHH---------HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCcc
Confidence 0000000000 0112999999999998777543 566666543 7999999999998642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. .+....+ .+|+...+++||++|.|++++|++++..+..
T Consensus 162 ~---------------~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 162 E---------------ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred c---------------hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1 1111122 2343356899999999999999999998865
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=144.05 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++.. +...+.+|..+.+...+.+++. .+.+|||+|...+....... + +.. +...
T Consensus 213 nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~----g--i~~---~~~~-- 279 (442)
T TIGR00450 213 NVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERL----G--IEK---SFKA-- 279 (442)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHH----H--HHH---HHHH--
Confidence 799999999999864 4556666666666777778875 45899999986543211100 0 000 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+...
T Consensus 280 -----------------------------~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 -----------------------------IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred -----------------------------HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc
Confidence 0122999999999999887753 5555443 36899999999999642
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+...+++.++ .+++++||++ .||+++|+.+.+.+..
T Consensus 326 ------------------~~~~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 326 ------------------SLEFFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred ------------------chhhhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 1123455566 4789999998 6999999999887764
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=149.47 Aligned_cols=150 Identities=18% Similarity=0.180 Sum_probs=103.8
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCcee------eeccc-ee--EEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTV------FDNYS-AN--VMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~------~~~~~-~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+++|+... +...+..+. +.++. .. +.+ ++..+.+.+|||||+.+|...+..++.
T Consensus 13 d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~ 92 (595)
T TIGR01393 13 DHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLA 92 (595)
T ss_pred CCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHH
Confidence 689999999999642 222222221 22221 11 222 566789999999999988766655565
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|||+++..+..... .|...+.
T Consensus 93 ~a------------------------------------------------D~aILVvDat~g~~~qt~~-~~~~~~~--- 120 (595)
T TIGR01393 93 AC------------------------------------------------EGALLLVDAAQGIEAQTLA-NVYLALE--- 120 (595)
T ss_pred hC------------------------------------------------CEEEEEecCCCCCCHhHHH-HHHHHHH---
Confidence 55 9999999999987777665 5554432
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc--eEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV--KYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|+++|+||+|+.+... ......+.+.+++. .++++||++|.|++++|+++.+.+..+.
T Consensus 121 ~~ipiIiViNKiDl~~~~~--------------~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 121 NDLEIIPVINKIDLPSADP--------------ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred cCCCEEEEEECcCCCccCH--------------HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 3689999999999865311 11123444445532 4899999999999999999999886554
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=126.95 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=63.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 190 (228)
|++++|+|+++.+++.. .|+..+ ....|+++++||+|+.+ ...+++..++.++++ .++
T Consensus 66 d~il~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~---------------~~~~~~~~~~~~~~~~~p~ 124 (158)
T PRK15467 66 DMLIYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD---------------ADVAATRKLLLETGFEEPI 124 (158)
T ss_pred CEEEEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc---------------ccHHHHHHHHHHcCCCCCE
Confidence 99999999999887633 333332 23679999999999864 233456677777774 489
Q ss_pred EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+++||++|+|++++|+.+.+.+.+
T Consensus 125 ~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 125 FELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEECCCccCHHHHHHHHHHhchh
Confidence 999999999999999999876654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=144.85 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|.+..+...+.+.+.... ...+.+++. ..+.+|||||++.|..++...+..+
T Consensus 97 d~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~a---------------- 159 (587)
T TIGR00487 97 DHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVT---------------- 159 (587)
T ss_pred CCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccC----------------
Confidence 6899999999998888665554443222 233444332 2678999999999887766555555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|+|+++. .+++.+ ..... .++|+++++||+|+.
T Consensus 160 --------------------------------DiaILVVda~dgv~~qT~e~i-----~~~~~--~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 160 --------------------------------DIVVLVVAADDGVMPQTIEAI-----SHAKA--ANVPIIVAINKIDKP 200 (587)
T ss_pred --------------------------------CEEEEEEECCCCCCHhHHHHH-----HHHHH--cCCCEEEEEECcccc
Confidence 999999999874 333322 12222 368999999999996
Q ss_pred CchHHHHHHhhccCccccHHHHHHHH-------HHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMA-------KEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.... ++..... ..++ -.+++++||++|.|++++|+++...
T Consensus 201 ~~~~---------------e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 201 EANP---------------DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred cCCH---------------HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 4211 1111221 2232 1479999999999999999998753
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=139.76 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=95.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+. .++..+..+.....+.+++. ..+.+|||+|...- +.... .+
T Consensus 199 NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~--l~~~l--------ie---------- 257 (351)
T TIGR03156 199 NAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRD--LPHEL--------VA---------- 257 (351)
T ss_pred CCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCccccc--CCHHH--------HH----------
Confidence 79999999999987643 23333434444555666332 46889999997321 00000 00
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.|...... ..++|++++|+|++++.+++.+. .|...+.... .+.|+++|+||+|+...
T Consensus 258 ----------~f~~tle~----------~~~ADlil~VvD~s~~~~~~~~~-~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 258 ----------AFRATLEE----------VREADLLLHVVDASDPDREEQIE-AVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred ----------HHHHHHHH----------HHhCCEEEEEEECCCCchHHHHH-HHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 00000000 01129999999999999888775 6666666543 36899999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. +. ... . +..+++++||++|.|++++++++...
T Consensus 317 ~~------------v~-----~~~-~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 PR------------IE-----RLE-E-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred Hh------------HH-----HHH-h-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 21 11 111 1 11368999999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=135.99 Aligned_cols=155 Identities=22% Similarity=0.227 Sum_probs=104.4
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++.... ..|..|........+.+++ ...+.+||+||...-.+
T Consensus 168 NaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~------------------------- 221 (424)
T PRK12297 168 NVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGAS------------------------- 221 (424)
T ss_pred CCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCccccc-------------------------
Confidence 79999999999976532 2343333222222333331 24688999999642111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCC---CCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCP---STPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~---~~piilv~nK~ 153 (228)
.+.++...|..+.+. |+++++|+|+++. .+++.+. .|..++..+.+ ..|++||+||+
T Consensus 222 ---~~~gLg~~fLrhier-------------~~llI~VID~s~~~~~dp~e~~~-~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 222 ---EGVGLGHQFLRHIER-------------TRVIVHVIDMSGSEGRDPIEDYE-KINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred ---ccchHHHHHHHHHhh-------------CCEEEEEEeCCccccCChHHHHH-HHHHHHhhhchhccCCcEEEEEeCC
Confidence 122233333333332 2999999999865 6777776 88888887753 68999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+... .+....+.+.++ .+++++||+++.|++++++++.+.+...
T Consensus 285 DL~~~----------------~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEA----------------EENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCC----------------HHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 98532 123455666666 5899999999999999999998877543
|
|
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-17 Score=120.98 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||++..++.-+... .+.||++.... .+..+...+++||.+|+...+++|++||.+.
T Consensus 28 GaGkttIlyrlqvgevv-ttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt----------------- 86 (182)
T KOG0072|consen 28 GAGKTTILYRLQVGEVV-TTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADT----------------- 86 (182)
T ss_pred CCCeeEEEEEcccCccc-ccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhccc-----------------
Confidence 67888888887765543 56777765444 3334667899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|.|.+|.+........++..+.+.. .+..++|++||.|.....
T Consensus 87 -------------------------------~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~ 135 (182)
T KOG0072|consen 87 -------------------------------DAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL 135 (182)
T ss_pred -------------------------------ceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence 999999999998887776656666776654 456788999999988764
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...|....- ...++.+ ..+.++++||.+|+|++.+++|+.+.+..
T Consensus 136 t~~E~~~~L--------~l~~Lk~--r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 136 TRSEVLKML--------GLQKLKD--RIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHHHHHh--------ChHHHhh--heeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 433332221 0111111 22689999999999999999999997764
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=142.60 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ...+..|..+.+...+.+++. .+.+|||+|...+....... .+...+..
T Consensus 225 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~------gi~~~~~~----- 291 (449)
T PRK05291 225 NVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKI------GIERSREA----- 291 (449)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHH------HHHHHHHH-----
Confidence 7999999999998763 445555556666666777774 57899999986432110000 00000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..++|++++|||++++.++.... .|.. ..+.|+++|+||+|+...
T Consensus 292 -----------------------------~~~aD~il~VvD~s~~~s~~~~~-~l~~-----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 292 -----------------------------IEEADLVLLVLDASEPLTEEDDE-ILEE-----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred -----------------------------HHhCCEEEEEecCCCCCChhHHH-HHHh-----cCCCCcEEEEEhhhcccc
Confidence 01129999999999998887653 3332 446899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. .. ...+ .+++++||++|.|++++++++...+..
T Consensus 337 ~~------------~~--------~~~~-~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 337 ID------------LE--------EENG-KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ch------------hh--------hccC-CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 21 11 2233 479999999999999999999998753
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=140.53 Aligned_cols=148 Identities=20% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHh-hcchhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE-IGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (228)
|||||||+++|++... ..++.++..+.....+.+++ ..+.+|||+|...... ... ..+... ..++
T Consensus 11 ~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~---~~~----~~~~~~~~~~~--- 78 (435)
T PRK00093 11 NVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDD---GFE----KQIREQAELAI--- 78 (435)
T ss_pred CCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcch---hHH----HHHHHHHHHHH---
Confidence 7999999999998763 34444444555555666677 6789999999875211 000 000000 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
..+|++++|+|++++.+.... .+...++.. +.|+++|+||+|+..
T Consensus 79 -------------------------------~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~ 123 (435)
T PRK00093 79 -------------------------------EEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPD 123 (435)
T ss_pred -------------------------------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCcc
Confidence 112999999999886554432 233334443 789999999999754
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. .....+ ..+|+..++++||++|.|++++|+++....
T Consensus 124 ~~----------------~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 124 EE----------------ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ch----------------hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 21 111222 345655689999999999999999998843
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=143.17 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=100.0
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++..+. +++..+..+.....+..++. .+.+||+||+..+..... ...+......
T Consensus 4 NvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~------~e~v~~~~l~------ 69 (591)
T TIGR00437 4 NVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSL------EEEVARDYLL------ 69 (591)
T ss_pred CCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccch------HHHHHHHHHh------
Confidence 79999999999987763 33333334444455666664 478999999987654321 0011110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
...+|++++|+|.++.+.-. .+...+.+ .+.|+++|+||+|+.+.
T Consensus 70 ----------------------------~~~aDvvI~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~- 114 (591)
T TIGR00437 70 ----------------------------NEKPDLVVNVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEK- 114 (591)
T ss_pred ----------------------------hcCCCEEEEEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHh-
Confidence 01129999999998744321 22223332 36999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+. .+...+.+.+| .+++++||++|.|++++|+++.+..
T Consensus 115 -----------~~i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 115 -----------KGIR-IDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred -----------CCCh-hhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 2233 34677888889 5999999999999999999998764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=117.85 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=92.8
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+. .....+........+..++. .+.+||++|........... . .+. ...+....
T Consensus 12 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~-e----~~~-~~~~~~~~- 82 (174)
T cd01895 12 NVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGI-E----KYS-VLRTLKAI- 82 (174)
T ss_pred CCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccH-H----HHH-HHHHHHHH-
Confidence 79999999999987642 22233333333344555654 46789999986542211100 0 000 00000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|+|++++.+.... .++..+... +.|+++++||+|+...
T Consensus 83 ------------------------------~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 83 ------------------------------ERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEK 128 (174)
T ss_pred ------------------------------hhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCc
Confidence 112999999999998887654 344343333 5899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHH-HHHHHh---CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGL-SMAKEI---GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...++.. .+.+.+ +..+++++||+++.|++++++.+.+.
T Consensus 129 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 129 DS------------KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred cH------------HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 21 1111111 111222 23589999999999999999998763
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-16 Score=125.68 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=58.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|++++|+|+++..+..... .+. .... .+.|+++|+||+|+....... ...++...... .
T Consensus 93 d~vi~VvD~~~~~~~~~~~-~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~~----------~~~~~~~~~l~~~~~~~~~ 158 (192)
T cd01889 93 DLMLLVVDATKGIQTQTAE-CLV-IGEI--LCKKLIVVLNKIDLIPEEERE----------RKIEKMKKKLQKTLEKTRF 158 (192)
T ss_pred CEEEEEEECCCCccHHHHH-HHH-HHHH--cCCCEEEEEECcccCCHHHHH----------HHHHHHHHHHHHHHHhcCc
Confidence 9999999998865544432 222 1122 257999999999997532211 11112221111 1
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+ .+++++||++|.|++++++.+..+|.-+
T Consensus 159 ~~-~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 159 KN-SPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CC-CCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 23 5899999999999999999999988754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=117.62 Aligned_cols=144 Identities=22% Similarity=0.242 Sum_probs=93.0
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++....+ ...+.++..+.+...+..++ ..+.+|||+|...+...... ..+....
T Consensus 11 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~------~~~~~~~------- 75 (157)
T cd04164 11 NVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEK------IGIERAR------- 75 (157)
T ss_pred CCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHH------HHHHHHH-------
Confidence 7999999999998764 22333333333334444444 56789999997654321000 0000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ..++|++++|+|++++.+..... .+.. ....|+++|+||+|+...
T Consensus 76 ------------------~~---------~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 76 ------------------EA---------IEEADLVLFVIDASRGLDEEDLE-ILEL-----PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred ------------------HH---------HhhCCEEEEEEECCCCCCHHHHH-HHHh-----hcCCCEEEEEEchhcCCc
Confidence 00 01229999999999988887764 2221 346999999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. . .....+ .+++++||+++.|+++++.++...+
T Consensus 123 ~~------------~-------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 123 SE------------L-------LSLLAG-KPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred cc------------c-------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence 21 1 223334 6899999999999999999988754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=124.32 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=93.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++++++.+...+.++.+.+...... .....+.+|||+|..... .+. .+.+.+..
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~l~l~DtpG~~~~~--~~~-------~~~~~~~~------- 95 (196)
T PRK00454 34 NVGKSSLINALTNRKNLARTSKTPGRTQLINFF--EVNDKLRLVDLPGYGYAK--VSK-------EEKEKWQK------- 95 (196)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCceeEEEEE--ecCCeEEEeCCCCCCCcC--CCc-------hHHHHHHH-------
Confidence 799999999999887665666555433222111 112578999999964311 000 00000000
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
.....+.. ...++++++|+|.+++.+.... .+...+.. .+.|+++++||+|+....+
T Consensus 96 -------------~~~~~~~~------~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~ 152 (196)
T PRK00454 96 -------------LIEEYLRT------RENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE 152 (196)
T ss_pred -------------HHHHHHHh------CccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH
Confidence 00000000 0112788999998876655432 22333332 2689999999999976432
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. ....++......... .+++++||+++.|++++|+.+...+.
T Consensus 153 ~----------~~~~~~i~~~l~~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 153 R----------KKQLKKVRKALKFGD-DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred H----------HHHHHHHHHHHHhcC-CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 1 111222333443334 58999999999999999999887664
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=144.24 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=101.3
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++++++... ...+.+|..+.+...+.+++.. +.+|||+|......... +........+..
T Consensus 460 nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~------~~e~~~~~r~~~--- 528 (712)
T PRK09518 460 NVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLT------GAEYYSSLRTQA--- 528 (712)
T ss_pred CCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccch------hHHHHHHHHHHH---
Confidence 7999999999998864 4556666666666666777764 55899999653211100 000000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
....+|++++|+|++++.++.... ++..+... +.|++||+||+|+.+.
T Consensus 529 ----------------------------~i~~advvilViDat~~~s~~~~~--i~~~~~~~--~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 ----------------------------AIERSELALFLFDASQPISEQDLK--VMSMAVDA--GRALVLVFNKWDLMDE 576 (712)
T ss_pred ----------------------------HhhcCCEEEEEEECCCCCCHHHHH--HHHHHHHc--CCCEEEEEEchhcCCh
Confidence 012239999999999998888763 44444443 6899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... + .-..+...........+.+++||++|.|++++|+.+.+...+
T Consensus 577 ~~~-~---------~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 577 FRR-Q---------RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred hHH-H---------HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 210 0 000011111111233567999999999999999999887754
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=143.13 Aligned_cols=147 Identities=20% Similarity=0.136 Sum_probs=100.2
Q ss_pred CCChhhhHHhhhh---CCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTT---NAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|+|||||+++|++ +.+.+++.+++.... ...+.+++ ..+.+||+||++.|.......+.++
T Consensus 10 d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~a------------- 74 (581)
T TIGR00475 10 DHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGI------------- 74 (581)
T ss_pred CCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccC-------------
Confidence 6899999999985 445545555543222 23345555 7889999999988765444444444
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEeC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGTK 152 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK 152 (228)
|++++|+|+++ +.+++.+. .+... ++| +++|+||
T Consensus 75 -----------------------------------D~aILVVDa~~G~~~qT~ehl~-----il~~l--gi~~iIVVlNK 112 (581)
T TIGR00475 75 -----------------------------------DAALLVVDADEGVMTQTGEHLA-----VLDLL--GIPHTIVVITK 112 (581)
T ss_pred -----------------------------------CEEEEEEECCCCCcHHHHHHHH-----HHHHc--CCCeEEEEEEC
Confidence 99999999998 55555542 22222 577 9999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHHhC---CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+|+.+.... ....++...+.+..+ ..+++++||++|.|+++++..+...+..
T Consensus 113 ~Dlv~~~~~----------~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 113 ADRVNEEEI----------KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCHHHH----------HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 999864321 112234455555543 2589999999999999999988775543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=118.05 Aligned_cols=153 Identities=19% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCChhhhHHhhhhCCCCCCC--CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+.... ..+... ............+.+||++|...........+.
T Consensus 13 g~GKttl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~----------------- 73 (168)
T cd04163 13 NVGKSTLLNALVGQKISIVSPKPQTTRN--RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMV----------------- 73 (168)
T ss_pred CCCHHHHHHHHhCCceEeccCCCCceec--eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHH-----------------
Confidence 79999999999977542211 112111 111122333467889999997643321111000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...... ...+|++++|+|++++.+.... .+...+... +.|+++|+||+|+...
T Consensus 74 --------------~~~~~~---------~~~~d~i~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 74 --------------KAAWSA---------LKDVDLVLFVVDASEPIGEGDE--FILELLKKS--KTPVILVLNKIDLVKD 126 (168)
T ss_pred --------------HHHHHH---------HHhCCEEEEEEECCCccCchHH--HHHHHHHHh--CCCEEEEEEchhcccc
Confidence 000000 0112999999999987322211 333444443 6899999999999843
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...+....+....+..+++++|++++.|++++++++.+.
T Consensus 127 ~~------------~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 127 KE------------DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HH------------HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 22 112223334444444689999999999999999998764
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=144.09 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=95.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|....+.....+.+.... ...+.+++ ..+.+|||||++.|..++...+..+
T Consensus 300 d~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~a---------------- 361 (787)
T PRK05306 300 DHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVT---------------- 361 (787)
T ss_pred CCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhC----------------
Confidence 6899999999998777654444332222 23445555 5678999999998876665444444
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++|+|||+++. .++..+. .... .++|+||++||+|+.
T Consensus 362 --------------------------------DiaILVVdAddGv~~qT~e~i~-----~a~~--~~vPiIVviNKiDl~ 402 (787)
T PRK05306 362 --------------------------------DIVVLVVAADDGVMPQTIEAIN-----HAKA--AGVPIIVAINKIDKP 402 (787)
T ss_pred --------------------------------CEEEEEEECCCCCCHhHHHHHH-----HHHh--cCCcEEEEEECcccc
Confidence 999999999884 3443321 2222 369999999999996
Q ss_pred CchH--HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKE--TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.... +...+. +...++..+| ..+++++||++|.||+++|+++...
T Consensus 403 ~a~~e~V~~eL~----------~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 403 GANPDRVKQELS----------EYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred ccCHHHHHHHHH----------HhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 5321 111110 0111233343 2589999999999999999998753
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=134.48 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=99.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++... ..+|..|........+.+++ ..+.+||+||...-.
T Consensus 169 NAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliega-------------------------- 220 (500)
T PRK12296 169 SAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGA-------------------------- 220 (500)
T ss_pred CCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCcccc--------------------------
Confidence 7999999999997643 23444444333333444444 568899999963211
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh----hhHHHHHHhhHHHHhhhC------------CC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP----ASFENVRAKWYPEVRHHC------------PS 143 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~------------~~ 143 (228)
..+.++...|..+.+ +|+++++|+|+++. ..+..+. .|..+|..+. ..
T Consensus 221 --s~g~gLg~~fLrhie-------------radvLv~VVD~s~~e~~rdp~~d~~-~i~~EL~~y~~~l~~~~~~~~l~~ 284 (500)
T PRK12296 221 --SEGKGLGLDFLRHIE-------------RCAVLVHVVDCATLEPGRDPLSDID-ALEAELAAYAPALDGDLGLGDLAE 284 (500)
T ss_pred --chhhHHHHHHHHHHH-------------hcCEEEEEECCcccccccCchhhHH-HHHHHHHHhhhcccccchhhhhcC
Confidence 111222223333322 23999999999863 3455554 5555555443 25
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.|++||+||+|+.+..... +.........+ .+++++||+++.|+++++.++.+.+...
T Consensus 285 kP~IVVlNKiDL~da~el~-------------e~l~~~l~~~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 285 RPRLVVLNKIDVPDARELA-------------EFVRPELEARG-WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCEEEEEECccchhhHHHH-------------HHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999997542211 11122233446 5899999999999999999999887553
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=136.77 Aligned_cols=151 Identities=20% Similarity=0.212 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ..++.++..+.....+..++. .+.+|||||......-
T Consensus 9 nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~----------------------- 63 (429)
T TIGR03594 9 NVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDG----------------------- 63 (429)
T ss_pred CCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchh-----------------------
Confidence 7999999999998763 334444445555556666664 5889999997422100
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.+.+..+....+ ..+|++++|+|.+++.+.... .+...+++. +.|+++|+||+|+...
T Consensus 64 --------~~~~~~~~~~~~~---------~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 64 --------LDKQIREQAEIAI---------EEADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKE 122 (429)
T ss_pred --------HHHHHHHHHHHHH---------hhCCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcc
Confidence 0000111111100 122999999999886555443 344455544 6899999999998754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. .. ... ...+|+.+++++||++|.|++++++++...+..
T Consensus 123 ~-------------~~---~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 123 D-------------AV---AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred c-------------cc---HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 2 11 111 235676689999999999999999999988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=143.87 Aligned_cols=147 Identities=16% Similarity=0.235 Sum_probs=97.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee---ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD---NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|+|||||+++|....+.....+.+.. .+...+..++....+.+|||||++.|..++...+..+
T Consensus 254 dvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a-------------- 319 (742)
T CHL00189 254 DHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT-------------- 319 (742)
T ss_pred CCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC--------------
Confidence 69999999999988776544433321 2223333445567899999999988876665555555
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~D 154 (228)
|++++|+|+++. .+++.+. .+.. .++|++||+||+|
T Consensus 320 ----------------------------------DiaILVVDA~dGv~~QT~E~I~-----~~k~--~~iPiIVViNKiD 358 (742)
T CHL00189 320 ----------------------------------DIAILIIAADDGVKPQTIEAIN-----YIQA--ANVPIIVAINKID 358 (742)
T ss_pred ----------------------------------CEEEEEEECcCCCChhhHHHHH-----HHHh--cCceEEEEEECCC
Confidence 999999999874 4444332 2222 3689999999999
Q ss_pred CCCchH--HHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 155 LRDDKE--TIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 155 l~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+..... ..+.+... ..+...+| ..+++++||++|.|++++|+.+....
T Consensus 359 l~~~~~e~v~~eL~~~----------~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 359 KANANTERIKQQLAKY----------NLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccccCHHHHHHHHHHh----------ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 975321 00100000 01122333 35899999999999999999998754
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=112.48 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=94.4
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++..+. ....++...........+. ...+.+||++|...+......... .+.
T Consensus 6 gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~-----~~~--------- 70 (163)
T cd00880 6 NAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREE-----LAR--------- 70 (163)
T ss_pred CCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHH-----HHH---------
Confidence 79999999999976543 1222333333333333221 467899999998765543321000 000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|+|.++..+..... +...... .+.|+++|+||+|+...
T Consensus 71 --------------~~-------------~~~~d~il~v~~~~~~~~~~~~~--~~~~~~~--~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 71 --------------RV-------------LERADLILFVVDADLRADEEEEK--LLELLRE--RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred --------------HH-------------HHhCCEEEEEEeCCCCCCHHHHH--HHHHHHh--cCCeEEEEEEccccCCh
Confidence 00 01129999999999988877653 2333322 37899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
........ ..........+ .+++++||+++.|+++++.++.+.
T Consensus 120 ~~~~~~~~---------~~~~~~~~~~~-~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 EEEEELLE---------LRLLILLLLLG-LPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhHHHHHH---------HHHhhcccccC-CceEEEeeeccCCHHHHHHHHHhh
Confidence 33111100 01111222223 689999999999999999999875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-16 Score=122.80 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=86.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++++.+..+...+.++.+.+.... +..++ .+.+||+||...-... . .....
T Consensus 28 ~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~-~--------~~~~~--------- 86 (179)
T TIGR03598 28 NVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVS-K--------EEKEK--------- 86 (179)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCC-h--------hHHHH---------
Confidence 7999999999998765545445544333211 22333 5889999996432100 0 00000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+.......+.. ...++++++|+|++++-+.... .++..+... ..|+++|+||+|+....
T Consensus 87 -----------~~~~~~~~l~~------~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 87 -----------WQKLIEEYLEK------RENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKS 145 (179)
T ss_pred -----------HHHHHHHHHHh------ChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHH
Confidence 00000000000 0112899999999886665554 334444433 68999999999997643
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLK 202 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~ 202 (228)
+. ....++....+...+. .+++++||++|+|++
T Consensus 146 ~~----------~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 146 EL----------NKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH----------HHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 21 1223334445554431 379999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=127.78 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=93.7
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++..+.. ....|........... ....+.+|||||........ ...|
T Consensus 15 n~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l-------~~~~----------- 74 (292)
T PRK00089 15 NVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRAL-------NRAM----------- 74 (292)
T ss_pred CCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHH-------HHHH-----------
Confidence 799999999999876532 1222222222211221 23678999999975432110 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...+...+ ..+|++++|+|+++..+- ....++..+.. .+.|+++|+||+|+...
T Consensus 75 -------------~~~~~~~~---------~~~D~il~vvd~~~~~~~--~~~~i~~~l~~--~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 75 -------------NKAAWSSL---------KDVDLVLFVVDADEKIGP--GDEFILEKLKK--VKTPVILVLNKIDLVKD 128 (292)
T ss_pred -------------HHHHHHHH---------hcCCEEEEEEeCCCCCCh--hHHHHHHHHhh--cCCCEEEEEECCcCCCC
Confidence 00000000 123999999999883222 11133334432 26899999999999843
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ........+.+.++..+++++||+++.|++++++++...+..
T Consensus 129 ~~------------~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 129 KE------------ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred HH------------HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 22 122234455555565689999999999999999999988754
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=133.99 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=94.8
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--cCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--RLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|++++..+.. +...+..+.....+.+.+. ..+.+|||+|..... .++..+
T Consensus 207 NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f------------------ 267 (426)
T PRK11058 207 NAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAF------------------ 267 (426)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHH------------------
Confidence 799999999999866432 2222333333344555442 246789999973321 111100
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
....+. ...+|++++|+|++++.++..+. .|...+.... .+.|+++|+||+|+.
T Consensus 268 --------------~~tl~~----------~~~ADlIL~VvDaS~~~~~e~l~-~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 268 --------------KATLQE----------TRQATLLLHVVDAADVRVQENIE-AVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred --------------HHHHHH----------hhcCCEEEEEEeCCCccHHHHHH-HHHHHHHHhccCCCCEEEEEEcccCC
Confidence 000000 01229999999999998888774 4444444432 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.... ...+. ...+...++++||++|.|++++++++...+..
T Consensus 323 ~~~~-------------~~~~~----~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 323 DDFE-------------PRIDR----DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cchh-------------HHHHH----HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5311 00011 12343235889999999999999999998753
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=117.67 Aligned_cols=146 Identities=19% Similarity=0.230 Sum_probs=92.4
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... .+++..+..+.....+.+++ ..+.++|+||-....+... ..+++...-
T Consensus 10 NvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~------ee~v~~~~l------- 74 (156)
T PF02421_consen 10 NVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSE------EERVARDYL------- 74 (156)
T ss_dssp TSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCc------HHHHHHHHH-------
Confidence 7999999999998764 23444444444455666666 5678889999754432211 122222111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+...| |++++|.|.++.+.-. .+...+... +.|+++|.||+|+....
T Consensus 75 -------------------~~~~~--------D~ii~VvDa~~l~r~l----~l~~ql~e~--g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 75 -------------------LSEKP--------DLIIVVVDATNLERNL----YLTLQLLEL--GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp -------------------HHTSS--------SEEEEEEEGGGHHHHH----HHHHHHHHT--TSSEEEEEETHHHHHHT
T ss_pred -------------------hhcCC--------CEEEEECCCCCHHHHH----HHHHHHHHc--CCCEEEEEeCHHHHHHc
Confidence 11112 9999999999744322 233344444 79999999999988652
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l 208 (228)
.+.. +...+.+.+| .|++++||+++.|++++++.+
T Consensus 122 ------------g~~i-d~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 122 ------------GIEI-DAEKLSERLG-VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp ------------TEEE--HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred ------------CCEE-CHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence 2322 3667888899 599999999999999999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=132.59 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=97.3
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||++++++.. ......+|..+.....+..++. .+.+|||+|...........-. ........++
T Consensus 183 n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~---~~~~~~~~~~---- 253 (435)
T PRK00093 183 NVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEK---YSVIRTLKAI---- 253 (435)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHH---HHHHHHHHHH----
Confidence 799999999999654 2333444545544444555554 4678999998654433210000 0000000011
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.++|++++|+|++++.+.... .+...+... ..|+++|+||+|+.+.
T Consensus 254 ------------------------------~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 254 ------------------------------ERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDE 299 (435)
T ss_pred ------------------------------HHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCH
Confidence 112999999999998887765 344444443 6899999999999853
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .+. +. .+........+..+++++||++|.|++++|+.+.+...
T Consensus 300 ~~-~~~--------~~-~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 300 KT-MEE--------FK-KELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred HH-HHH--------HH-HHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 110 11 11111122233468999999999999999999876443
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=122.19 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.++............+....+.+||+||+..++..+..+++.+
T Consensus 10 ~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~----------------- 72 (203)
T cd04105 10 DSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNS----------------- 72 (203)
T ss_pred CCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhcc-----------------
Confidence 799999999999998877665553322221222224456799999999988754443333221
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhh---hCCCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRH---HCPSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~---~~~~~piilv~nK~Dl~ 156 (228)
.+++|+|+|+++. +++..+.+.++..+.. +...+|++||+||+|+.
T Consensus 73 ------------------------------~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 73 ------------------------------AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred ------------------------------CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 1999999999997 7788776333333332 23579999999999987
Q ss_pred Cc
Q psy8274 157 DD 158 (228)
Q Consensus 157 ~~ 158 (228)
..
T Consensus 123 ~a 124 (203)
T cd04105 123 TA 124 (203)
T ss_pred cc
Confidence 54
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-16 Score=118.61 Aligned_cols=151 Identities=24% Similarity=0.309 Sum_probs=108.4
Q ss_pred CCChhhhHHhhhhC---CCCC----CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTN---AFPG----EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~----~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (228)
|+|||||+-+..+. .+.+ .-.+|++-. ..++.++ ...+.+||.+||+..+++|..||..+
T Consensus 27 nAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~---------- 93 (197)
T KOG0076|consen 27 NAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLA---------- 93 (197)
T ss_pred cCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeec--cceeEEEEcCChHHHHHHHHHHHHHh----------
Confidence 68999999876532 1211 223344322 2334445 35789999999999999999999998
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-h-CCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-H-CPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~-~~~~piilv~n 151 (228)
+++|+++|.+|++.|+... .-++.+.. . -..+|+++.+|
T Consensus 94 --------------------------------------H~ii~viDa~~~eR~~~~~-t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 94 --------------------------------------HGIIYVIDATDRERFEESK-TAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred --------------------------------------ceeEEeecCCCHHHHHHHH-HHHHHHHHHHHhcCCchhhhcc
Confidence 9999999999999999887 43444333 2 25799999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHH---hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE---IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|.|+.+..+..+.- .....+.. .. .++.+|||.+|+||++..+|+...+.+.
T Consensus 135 kqd~q~~~~~~El~-----------~~~~~~e~~~~rd-~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 135 KQDLQNAMEAAELD-----------GVFGLAELIPRRD-NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhhhhHHHHH-----------HHhhhhhhcCCcc-CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 99999874432220 01111122 23 4799999999999999999999998877
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-15 Score=119.71 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=56.7
Q ss_pred ceEEEEEecCCh----hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNP----ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++ .++..+. .+... ...|+++|+||+|+....... ...++...+...+
T Consensus 108 D~~llVvd~~~~~~~~~t~~~l~-----~~~~~-~~~~iiivvNK~Dl~~~~~~~----------~~~~~i~~~~~~~~~ 171 (203)
T cd01888 108 DGALLLIAANEPCPQPQTSEHLA-----ALEIM-GLKHIIIVQNKIDLVKEEQAL----------ENYEQIKKFVKGTIA 171 (203)
T ss_pred CEEEEEEECCCCCCCcchHHHHH-----HHHHc-CCCcEEEEEEchhccCHHHHH----------HHHHHHHHHHhcccc
Confidence 999999999873 3333332 22222 235799999999997642211 1112333333332
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
...+++++||++|.|++++|+.+...+..
T Consensus 172 ~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 172 ENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12579999999999999999999887654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-15 Score=136.18 Aligned_cols=155 Identities=19% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCc----eeeeccc-ee------------EEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP----TVFDNYS-AN------------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~----t~~~~~~-~~------------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|.+..+...... +++..+. .. ..++.....+.+|||||++.|..++...+..+
T Consensus 14 d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~a 93 (590)
T TIGR00491 14 DHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALA 93 (590)
T ss_pred CCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhC
Confidence 6999999999998877543322 2222111 00 01111112488999999998887776666666
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++++|||+++ +.+++.+. .+..
T Consensus 94 ------------------------------------------------D~~IlVvD~~~g~~~qt~e~i~-----~l~~- 119 (590)
T TIGR00491 94 ------------------------------------------------DLAILIVDINEGFKPQTQEALN-----ILRM- 119 (590)
T ss_pred ------------------------------------------------CEEEEEEECCcCCCHhHHHHHH-----HHHH-
Confidence 99999999997 55555442 2222
Q ss_pred CCCCCEEEEEeCCCCCCchH------HHH-----------HHhhc--------cCccccHHHHHHHHHHhCCceEEEecc
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------TIE-----------KLKEK--------KLAPITYPQGLSMAKEIGAVKYLECSA 195 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~~~-----------~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~evSa 195 (228)
.++|+++++||+|+...-. ..+ .+... ....+..+.........+..+++++||
T Consensus 120 -~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA 198 (590)
T TIGR00491 120 -YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISA 198 (590)
T ss_pred -cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeec
Confidence 2689999999999974210 000 00000 000011111111111123468999999
Q ss_pred cCCCCHHHHHHHHHH
Q psy8274 196 LTQKGLKTVFDEAIR 210 (228)
Q Consensus 196 ~~~~~v~~lf~~l~~ 210 (228)
++|+|+++++.++..
T Consensus 199 ~tGeGideLl~~l~~ 213 (590)
T TIGR00491 199 ITGEGIPELLTMLAG 213 (590)
T ss_pred CCCCChhHHHHHHHH
Confidence 999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=125.54 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=102.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... ...|..|+.......+..++ ...+.++|+||...-.+
T Consensus 169 NaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~------------------------- 222 (390)
T PRK12298 169 NAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGAS------------------------- 222 (390)
T ss_pred CCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCcccccc-------------------------
Confidence 7999999999997543 23344444333333344332 13478899999643111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC---ChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV---NPASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt---~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.+.++...|..+.+. ++++++|+|++ +.+.+..+. .|+.++..+. ...|++||+||+
T Consensus 223 ---~~~~Lg~~~l~~i~r-------------advlL~VVD~s~~~~~d~~e~~~-~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 223 ---EGAGLGIRFLKHLER-------------CRVLLHLIDIAPIDGSDPVENAR-IIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred ---chhhHHHHHHHHHHh-------------CCEEEEEeccCcccccChHHHHH-HHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 111122222222222 29999999998 456677776 8888888764 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|+..... + .+....+.+.++. .+++++||+++.|++++++++...+..
T Consensus 286 Dl~~~~e------------l-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 286 DLLDEEE------------A-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred ccCChHH------------H-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 9975421 1 1233344444442 268999999999999999999988754
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-15 Score=138.65 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++... ...+..+..+........++ ..+.+|||+|.+....-.
T Consensus 285 nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~---------------------- 340 (712)
T PRK09518 285 NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGI---------------------- 340 (712)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccH----------------------
Confidence 7999999999997653 22332232333333444455 457889999976321100
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+..+..++...+ ..+|++++|+|+++.-+.. ...|...++.. +.|+++|+||+|+...
T Consensus 341 ---------~~~~~~~~~~~~---------~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr~~--~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 341 ---------DSAIASQAQIAV---------SLADAVVFVVDGQVGLTST--DERIVRMLRRA--GKPVVLAVNKIDDQAS 398 (712)
T ss_pred ---------HHHHHHHHHHHH---------HhCCEEEEEEECCCCCCHH--HHHHHHHHHhc--CCCEEEEEECcccccc
Confidence 000111110000 1129999999998743332 22566666544 7999999999998653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ....+. .+|....+++||++|.||+++|++++..+..
T Consensus 399 ~~----------------~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 399 EY----------------DAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred hh----------------hHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 10 111221 2343456899999999999999999998765
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=134.56 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=99.0
Q ss_pred CCChhhhHHhhhhC--CCCC-----CCC------ceeeeccc-eeEEE-----cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTN--AFPG-----EYI------PTVFDNYS-ANVMV-----DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~-----~~~------~t~~~~~~-~~~~~-----~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
++|||||+.+|+.. .+.. .+. .+.+.+.. ..+.+ ++..+.+.+|||||+.+|...+...+.
T Consensus 17 d~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~~sl~ 96 (600)
T PRK05433 17 DHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSRSLA 96 (600)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHHHHHH
Confidence 68999999999863 2211 110 01111111 11111 566789999999999988765555555
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++|+|+|++++....... .|.....
T Consensus 97 ~a------------------------------------------------D~aILVVDas~gv~~qt~~-~~~~~~~--- 124 (600)
T PRK05433 97 AC------------------------------------------------EGALLVVDASQGVEAQTLA-NVYLALE--- 124 (600)
T ss_pred HC------------------------------------------------CEEEEEEECCCCCCHHHHH-HHHHHHH---
Confidence 55 9999999999876665554 5543322
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|+++|+||+|+..... ......+.+.+++ ..++++||++|.|++++++++...+..+.
T Consensus 125 ~~lpiIvViNKiDl~~a~~--------------~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 125 NDLEIIPVLNKIDLPAADP--------------ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCCCEEEEEECCCCCcccH--------------HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 3689999999999865311 1111233333443 24899999999999999999999886554
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=112.92 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++++++.+.....++.+.... ..+..++ .+.+||++|...... +.. ..+.+..
T Consensus 9 g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~--~~~-------~~~~~~~------ 70 (170)
T cd01876 9 NVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKV--SKE-------VKEKWGK------ 70 (170)
T ss_pred CCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcccccc--CHH-------HHHHHHH------
Confidence 79999999999977665555555433222 1223333 788999999654321 000 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.+...+.. ..+++++++++|.++..+.... ..+..+... +.|+++|+||+|+....
T Consensus 71 ------~~~~~~~~--------------~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 71 ------LIEEYLEN--------------RENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKS 126 (170)
T ss_pred ------HHHHHHHh--------------ChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChH
Confidence 00000000 1223889999999876433221 223333333 58999999999996543
Q ss_pred HHHHHHhhccCccccHHHHHHHHH-HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAK-EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. ...........+ .....+++++||+++.+++++++++.+.
T Consensus 127 ~~----------~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 127 EL----------AKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HH----------HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 21 111122222332 2333689999999999999999999864
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-14 Score=115.50 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+|+++|+||+|+.... ++..+++. ..++++||++|.|++++|+.+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~~~-----------------~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLISIE-----------------ELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCCHH-----------------HHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 36999999999987542 23344442 3689999999999999999998754
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-14 Score=122.48 Aligned_cols=149 Identities=20% Similarity=0.172 Sum_probs=105.7
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--cCCCCccccccchhHHhhcchhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--RLRPLSYPQTGLSMAKEIGAVKY 76 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 76 (228)
|||||||+||+++.+. ..++..++.|.......+.+.. +.++||+|-+... .+.. +..
T Consensus 13 NVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~-------~i~--------- 74 (444)
T COG1160 13 NVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQE-------LIR--------- 74 (444)
T ss_pred CCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHH-------HHH---------
Confidence 8999999999997764 5677778888888888888865 7888999976433 1111 111
Q ss_pred hhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 77 LECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
+|...+..++ |++|||+|....-+-.+- .+...|+ ..++|++||+||+|-.
T Consensus 75 -----------~Qa~~Ai~eA--------------DvilfvVD~~~Git~~D~--~ia~~Lr--~~~kpviLvvNK~D~~ 125 (444)
T COG1160 75 -----------EQALIAIEEA--------------DVILFVVDGREGITPADE--EIAKILR--RSKKPVILVVNKIDNL 125 (444)
T ss_pred -----------HHHHHHHHhC--------------CEEEEEEeCCCCCCHHHH--HHHHHHH--hcCCCEEEEEEcccCc
Confidence 1112222222 999999998765454433 4555666 3379999999999976
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. ++...-.-.+|+...+.+||..|.|+.+|+++++..+.
T Consensus 126 ~~-----------------e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 126 KA-----------------EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hh-----------------hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 43 12223334567778999999999999999999999873
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=130.43 Aligned_cols=146 Identities=21% Similarity=0.208 Sum_probs=90.8
Q ss_pred CCChhhhHHhhhh---CCCCCCC--CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTT---NAFPGEY--IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
++|||||+++|++ +.+.++. -.|+...|......++. .+.+||+||+++|.......+..+
T Consensus 10 dhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~------------ 75 (614)
T PRK10512 10 DHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGI------------ 75 (614)
T ss_pred CCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcC------------
Confidence 5899999999984 3444333 23332222211111333 478999999987743222222333
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEe
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGT 151 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~n 151 (228)
|++++|+|+++ +.+.+.+ ..+... ++| ++||+|
T Consensus 76 ------------------------------------D~~lLVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlN 112 (614)
T PRK10512 76 ------------------------------------DHALLVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALT 112 (614)
T ss_pred ------------------------------------CEEEEEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEE
Confidence 99999999987 4444443 223222 355 579999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+.+.... + ...++...+....++ .+++++||++|.|++++++.+.....
T Consensus 113 KiDlv~~~~~-~---------~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 113 KADRVDEARI-A---------EVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCccCCHHHH-H---------HHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 9999764211 1 112344555555442 57999999999999999999986543
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-14 Score=125.39 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=53.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHH--HHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYP--EVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~--~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|++++|+|+++++++... .+.. .+.......|++||+||+|+.+.. +.. .....++..+++..++
T Consensus 110 D~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~---------~~~~~ei~~~~~~~g~~ 178 (426)
T TIGR00483 110 DAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMDSVNYDEEEF---------EAIKKEVSNLIKKVGYN 178 (426)
T ss_pred CEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChhccCccHHHH---------HHHHHHHHHHHHHcCCC
Confidence 999999999988654221 1111 122222345799999999997421 111 1223456677777663
Q ss_pred ---ceEEEecccCCCCHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+++++
T Consensus 179 ~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 179 PDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cccceEEEeeccccccccccc
Confidence 579999999999998733
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.7e-13 Score=126.84 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=99.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... .+++..+..+..... ++.....+.+||+||...+......... ...++...
T Consensus 13 NvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~--~E~i~~~~-------- 80 (772)
T PRK09554 13 NSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSL--DEQIACHY-------- 80 (772)
T ss_pred CCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccH--HHHHHHHH--------
Confidence 7999999999997654 223333222222223 3344467899999999876543221110 01111110
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
... ..+|++++|+|.++.+.-. .|...+.+. +.|+++|+||+|+.+.
T Consensus 81 ------------------l~~--------~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~- 127 (772)
T PRK09554 81 ------------------ILS--------GDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEK- 127 (772)
T ss_pred ------------------Hhc--------cCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhc-
Confidence 001 1229999999999865432 233344443 6999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.+ ..+...+.+.+|+ +++++||++|.|++++.+.+.+..
T Consensus 128 -----------~~i-~id~~~L~~~LG~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 128 -----------QNI-RIDIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -----------cCc-HHHHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 223 2456778888995 899999999999999999888754
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-13 Score=104.69 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=107.0
Q ss_pred CCChhhhHHhhhhCCC--------CCCCCc----eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhH
Q psy8274 1 AVGKTCLLISYTTNAF--------PGEYIP----TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--------~~~~~~----t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~ 68 (228)
|+||||+++++..... ...+.. |+..+|.. +.+++ ...+-++|||||.+|.-+|....+++
T Consensus 20 ~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~~-~~~v~LfgtPGq~RF~fm~~~l~~ga----- 92 (187)
T COG2229 20 GAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELDE-DTGVHLFGTPGQERFKFMWEILSRGA----- 92 (187)
T ss_pred ccchhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEcC-cceEEEecCCCcHHHHHHHHHHhCCc-----
Confidence 6899999999987764 112222 22333332 22222 24677899999999999999999888
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEE
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIIL 148 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piil 148 (228)
.+.+++.|.+.+..+ +.. .++..+.+.++ +|++|
T Consensus 93 -------------------------------------------~gaivlVDss~~~~~-~a~-~ii~f~~~~~~-ip~vV 126 (187)
T COG2229 93 -------------------------------------------VGAIVLVDSSRPITF-HAE-EIIDFLTSRNP-IPVVV 126 (187)
T ss_pred -------------------------------------------ceEEEEEecCCCcch-HHH-HHHHHHhhccC-CCEEE
Confidence 999999999999999 444 67777777644 99999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++||.||.+. .+.++...+.... . .+.++++|..++++.+.++.+...
T Consensus 127 a~NK~DL~~a--------------~ppe~i~e~l~~~~~~-~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 127 AINKQDLFDA--------------LPPEKIREALKLELLS-VPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EeeccccCCC--------------CCHHHHHHHHHhccCC-CceeeeecccchhHHHHHHHHHhh
Confidence 9999999985 3444444444433 5 689999999999999999998877
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-13 Score=115.97 Aligned_cols=161 Identities=21% Similarity=0.224 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++.. ...+...|..|.....+..+++. +.++||+|-.+-..+....- .-.++.-..|+.+.
T Consensus 188 NvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E---~~Sv~rt~~aI~~a- 261 (444)
T COG1160 188 NVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVE---KYSVARTLKAIERA- 261 (444)
T ss_pred CCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceE---EEeehhhHhHHhhc-
Confidence 799999999999764 34455667777777778888875 46679999766544443221 11222333333333
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|.|.+.+-+-++. .....+.+. ..++++|.||+|+.+.
T Consensus 262 ---------------------------------~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 262 ---------------------------------DVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEE 304 (444)
T ss_pred ---------------------------------CEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCc
Confidence 999999999998777766 455666655 7899999999999875
Q ss_pred hH-HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KE-TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+ ..+. -..+........+..+.+.+||++|.++.++|+.+.....
T Consensus 305 ~~~~~~~---------~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 305 DEATMEE---------FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred hhhHHHH---------HHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 22 1111 1112223333346678999999999999999999887654
|
|
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-14 Score=104.02 Aligned_cols=151 Identities=21% Similarity=0.263 Sum_probs=108.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+.++...... .-.||-+-+ .+.+..+|. +.+.+||++|+...+++|.-||.+.
T Consensus 27 nAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenv----------------- 86 (185)
T KOG0074|consen 27 NAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENV----------------- 86 (185)
T ss_pred CCcchhHHHHHccCChh-hccccCCcc-eEEEeecCc-EEEEEEecCCccccchhhhhhhhcc-----------------
Confidence 68999999999875432 223333321 244555553 8899999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
|++|+|.|.+|...|+.+.+++.+.+.... ..+|+.+.+||.|+...-
T Consensus 87 -------------------------------d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 87 -------------------------------DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred -------------------------------ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 999999999999999998866666666543 468999999999988653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.+....- -....+... ..+-++||.+++|+.+..+|+....
T Consensus 136 ~~eeia~kl---------nl~~lrdRs-whIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 136 KVEEIALKL---------NLAGLRDRS-WHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred chHHHHHhc---------chhhhhhce-EEeeeCccccccCccCcchhhhcCC
Confidence 221111000 001111112 4678899999999999999987644
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=110.53 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=58.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG----- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 186 (228)
|++|+|.|+.+.-.-... ..+..+... ++|+++|.||+|+.... .+. +-.+....+.+..+
T Consensus 95 D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~--~~~--------~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 95 DIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKE--LEE--------IIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp SEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHH--HHH--------HHHHHHHHHHHHTTSTTTS
T ss_pred ccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhh--HHH--------HHHHHHHHhccccccCccc
Confidence 999999999876444332 344455555 68899999999998321 110 11111224444442
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+++++||++|.|++++++.+.+.+
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999998865
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-14 Score=127.62 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=107.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
||||||||-+++...|.+.-.+ ..+.+..-..+....+...+.|++....-+.....-++.+
T Consensus 19 G~GKtSLImSL~~eef~~~VP~-rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA----------------- 80 (625)
T KOG1707|consen 19 GVGKTSLIMSLLEEEFVDAVPR-RLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA----------------- 80 (625)
T ss_pred CccHHHHHHHHHhhhccccccc-cCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc-----------------
Confidence 8999999999999998754333 2222221122233445577889874433221111112222
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++.++|++++++|++.+.-+|++.+++.. -.+||||||||+|+..
T Consensus 81 -------------------------------~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 81 -------------------------------DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred -------------------------------CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 999999999999999999989999999987 4699999999999987
Q ss_pred chHHHHHHhhccCccccHHH-HHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQ-GLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~-~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
... -+.+. ...+...+ .+-.+++|||++..++.++|.-.-.+++-+..
T Consensus 130 ~~~------------~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 130 NEN------------NSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred ccc------------cchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCc
Confidence 532 11111 22222222 22358899999999999999999999987654
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=120.91 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=51.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA---- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 187 (228)
|++++|+|++++.++......++..+... ...|+++|+||+|+....... .....++...+.+..++
T Consensus 109 D~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~--------~~~~~~~i~~~l~~~g~~~~~ 179 (425)
T PRK12317 109 DAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR--------YEEVKEEVSKLLKMVGYKPDD 179 (425)
T ss_pred CEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH--------HHHHHHHHHHHHHhhCCCcCc
Confidence 99999999987323322221222223222 234689999999997521100 00123445566666653
Q ss_pred ceEEEecccCCCCHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+++++
T Consensus 180 ~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 180 IPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ceEEEeecccCCCccccc
Confidence 479999999999998743
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=112.45 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=67.5
Q ss_pred CCChhhhHHhhhhCCCCCCC-----------Ccee------eecc-c--eeEEE---cCeEEeeeeeeCCCCcccccCCC
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-----------IPTV------FDNY-S--ANVMV---DGKPINLGLWDTAGQEDYDRLRP 57 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-----------~~t~------~~~~-~--~~~~~---~~~~~~~~i~D~~g~~~~~~~~~ 57 (228)
|+|||||+.+|+...+.... ..+. +... . ..+.. ++..+.+.+|||||+..+.....
T Consensus 10 ~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~~~~~ 89 (213)
T cd04167 10 HHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFMDEVA 89 (213)
T ss_pred CCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchHHHHH
Confidence 79999999999976543211 0110 1111 0 11111 35568899999999987754444
Q ss_pred CccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH
Q psy8274 58 LSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV 137 (228)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l 137 (228)
..+..+ |++++|+|+++..++... .++...
T Consensus 90 ~~~~~a------------------------------------------------D~~llVvD~~~~~~~~~~--~~~~~~ 119 (213)
T cd04167 90 AALRLS------------------------------------------------DGVVLVVDVVEGVTSNTE--RLIRHA 119 (213)
T ss_pred HHHHhC------------------------------------------------CEEEEEEECCCCCCHHHH--HHHHHH
Confidence 344444 999999999987776542 444444
Q ss_pred hhhCCCCCEEEEEeCCCCC
Q psy8274 138 RHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 138 ~~~~~~~piilv~nK~Dl~ 156 (228)
... +.|+++|+||+|+.
T Consensus 120 ~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 120 ILE--GLPIVLVINKIDRL 136 (213)
T ss_pred HHc--CCCEEEEEECcccC
Confidence 332 58999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-13 Score=123.38 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=88.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCc----eeeeccc-eeE--EEcCeEE----------eeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP----TVFDNYS-ANV--MVDGKPI----------NLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~----t~~~~~~-~~~--~~~~~~~----------~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||++++.+..+...... +++.++. ... ...+... .+.+|||||++.|..++...+..+
T Consensus 16 ~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~a 95 (586)
T PRK04004 16 DHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALA 95 (586)
T ss_pred CCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhC
Confidence 6899999999986554322222 3332221 000 0011111 268999999998876655444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++++|+|+++ +.++..+. .+..
T Consensus 96 ------------------------------------------------D~~IlVvDa~~g~~~qt~e~i~-----~~~~- 121 (586)
T PRK04004 96 ------------------------------------------------DIAILVVDINEGFQPQTIEAIN-----ILKR- 121 (586)
T ss_pred ------------------------------------------------CEEEEEEECCCCCCHhHHHHHH-----HHHH-
Confidence 99999999997 66666553 2222
Q ss_pred CCCCCEEEEEeCCCCCCchH------H-----------HHHHhhc--------cCccccHHHHHHHHHH-hCCceEEEec
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------T-----------IEKLKEK--------KLAPITYPQGLSMAKE-IGAVKYLECS 194 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~-----------~~~~~~~--------~~~~v~~~~~~~~~~~-~~~~~~~evS 194 (228)
.++|+++++||+|+...-. . .+.+... ....+..+.... .+. .+..+++++|
T Consensus 122 -~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~-~~~~~~~v~ivpiS 199 (586)
T PRK04004 122 -RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDR-VKDFTKTVAIVPVS 199 (586)
T ss_pred -cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhh-hhccCCCceEeecc
Confidence 3789999999999852100 0 0000000 000011110000 011 1336799999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy8274 195 ALTQKGLKTVFDEAIR 210 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~ 210 (228)
|++|.|+++++..+..
T Consensus 200 A~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 200 AKTGEGIPDLLMVLAG 215 (586)
T ss_pred CCCCCChHHHHHHHHH
Confidence 9999999999988764
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=109.08 Aligned_cols=161 Identities=19% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCChhhhHHhhhhCCCCC------CCCceeee----------cc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPG------EYIPTVFD----------NY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~------~~~~t~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++++...-.. ....+..+ +. .....+......+.+|||||+..|...+...++.+
T Consensus 9 ~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~a 88 (237)
T cd04168 9 DAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVL 88 (237)
T ss_pred CCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHh
Confidence 799999999998642110 00011111 11 11223334457889999999987765444444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
|++++|+|+++...... . .+...+... +
T Consensus 89 ------------------------------------------------D~~IlVvd~~~g~~~~~-~-~~~~~~~~~--~ 116 (237)
T cd04168 89 ------------------------------------------------DGAILVISAVEGVQAQT-R-ILWRLLRKL--N 116 (237)
T ss_pred ------------------------------------------------CeEEEEEeCCCCCCHHH-H-HHHHHHHHc--C
Confidence 99999999998755432 2 555555544 6
Q ss_pred CCEEEEEeCCCCCCch--HHHHHH---hhc----------------------------------------cCccccHHHH
Q psy8274 144 TPIILVGTKLDLRDDK--ETIEKL---KEK----------------------------------------KLAPITYPQG 178 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~--~~~~~~---~~~----------------------------------------~~~~v~~~~~ 178 (228)
+|+++++||+|+.... ...+.. .+. ....++.++.
T Consensus 117 ~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el 196 (237)
T cd04168 117 IPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELEL 196 (237)
T ss_pred CCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHH
Confidence 8999999999987532 111110 000 0112333333
Q ss_pred HHHHHH----hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 179 LSMAKE----IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 179 ~~~~~~----~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..-.+. -.++|.|..||.++.||..+++.+...+.
T Consensus 197 ~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 197 DNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred HHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 322222 23467888899999999999999988653
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=108.75 Aligned_cols=156 Identities=19% Similarity=0.131 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++....- .-..|+.......+..+ ..++.+.||||-....... ++.|-+...
T Consensus 16 NvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l-------~~~m~~~a~------ 80 (298)
T COG1159 16 NVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHAL-------GELMNKAAR------ 80 (298)
T ss_pred CCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHH-------HHHHHHHHH------
Confidence 799999999999887531 22223333333333333 4678889999975432211 222222211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. -..+|+++||.|++.+..-.+- ..++.+.. .+.|++++.||+|...+
T Consensus 81 ------------------~s---------l~dvDlilfvvd~~~~~~~~d~--~il~~lk~--~~~pvil~iNKID~~~~ 129 (298)
T COG1159 81 ------------------SA---------LKDVDLILFVVDADEGWGPGDE--FILEQLKK--TKTPVILVVNKIDKVKP 129 (298)
T ss_pred ------------------HH---------hccCcEEEEEEeccccCCccHH--HHHHHHhh--cCCCeEEEEEccccCCc
Confidence 11 1233999999999875443321 34445554 36899999999999876
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
... . ......+...+.+...+++||+.|.|++.+.+.+...+..
T Consensus 130 ~~~-----------l-~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 130 KTV-----------L-LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHH-----------H-HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 421 1 2223334444566689999999999999999988887654
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=121.68 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=97.9
Q ss_pred CCChhhhHHhhhh--CCCCCCCC------------ceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEYI------------PTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
++|||||+.+|+. +.|...+. .+.+.++ .+...++...+.+.+|||||+.+|...+..+++.+
T Consensus 15 d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~a-- 92 (607)
T PRK10218 15 DHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMV-- 92 (607)
T ss_pred CCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhC--
Confidence 6899999999996 45533221 1112222 22334455568899999999998876666566665
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|+++....... .++..+... ++|
T Consensus 93 ----------------------------------------------Dg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip 122 (607)
T PRK10218 93 ----------------------------------------------DSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLK 122 (607)
T ss_pred ----------------------------------------------CEEEEEEecccCccHHHH--HHHHHHHHc--CCC
Confidence 999999999875433322 233333333 689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHH-------HHhCCceEEEecccCCC----------CHHHHHHHH
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA-------KEIGAVKYLECSALTQK----------GLKTVFDEA 208 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~evSa~~~~----------~v~~lf~~l 208 (228)
++++.||+|+....... ..++...+. .... ++++.+||++|. ++..+|+.+
T Consensus 123 ~IVviNKiD~~~a~~~~-----------vl~ei~~l~~~l~~~~~~~~-~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~I 190 (607)
T PRK10218 123 PIVVINKVDRPGARPDW-----------VVDQVFDLFVNLDATDEQLD-FPIVYASALNGIAGLDHEDMAEDMTPLYQAI 190 (607)
T ss_pred EEEEEECcCCCCCchhH-----------HHHHHHHHHhccCccccccC-CCEEEeEhhcCcccCCccccccchHHHHHHH
Confidence 99999999987542210 001111111 1123 579999999998 588999998
Q ss_pred HHHhcCCC
Q psy8274 209 IRAVLCPV 216 (228)
Q Consensus 209 ~~~i~~~~ 216 (228)
+..+..+.
T Consensus 191 i~~iP~P~ 198 (607)
T PRK10218 191 VDHVPAPD 198 (607)
T ss_pred HHhCCCCC
Confidence 88886553
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-13 Score=122.27 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=95.8
Q ss_pred CCChhhhHHhhhh--CCCCCCCCce--e----------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTT--NAFPGEYIPT--V----------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~~~~~t--~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
++|||||+.+++. +.|......+ + +.+. .+...++...+.+.+|||||+.+|.......+..+
T Consensus 11 d~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~a-- 88 (594)
T TIGR01394 11 DHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMV-- 88 (594)
T ss_pred CCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhC--
Confidence 6899999999996 4443221100 0 1111 12223334457889999999988765444444444
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++++|+|+++.. ..... .|+..+... ++|
T Consensus 89 ----------------------------------------------D~alLVVDa~~G~-~~qT~-~~l~~a~~~--~ip 118 (594)
T TIGR01394 89 ----------------------------------------------DGVLLLVDASEGP-MPQTR-FVLKKALEL--GLK 118 (594)
T ss_pred ----------------------------------------------CEEEEEEeCCCCC-cHHHH-HHHHHHHHC--CCC
Confidence 9999999998743 22222 455555544 689
Q ss_pred EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------HhCCceEEEecccCCC----------CHHHHHHHH
Q psy8274 146 IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------EIGAVKYLECSALTQK----------GLKTVFDEA 208 (228)
Q Consensus 146 iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~evSa~~~~----------~v~~lf~~l 208 (228)
+++|+||+|+.+.... + + ..+...+.. .+. .+++++||++|. |+..+|+.+
T Consensus 119 ~IVviNKiD~~~a~~~-~---------v-~~ei~~l~~~~g~~~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~I 186 (594)
T TIGR01394 119 PIVVINKIDRPSARPD-E---------V-VDEVFDLFAELGADDEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAI 186 (594)
T ss_pred EEEEEECCCCCCcCHH-H---------H-HHHHHHHHHhhcccccccc-CcEEechhhcCcccccCcccccCHHHHHHHH
Confidence 9999999998653210 0 0 112222221 234 479999999995 799999999
Q ss_pred HHHhcCCC
Q psy8274 209 IRAVLCPV 216 (228)
Q Consensus 209 ~~~i~~~~ 216 (228)
+..+..+.
T Consensus 187 v~~lP~P~ 194 (594)
T TIGR01394 187 VRHVPAPK 194 (594)
T ss_pred HHhCCCCC
Confidence 99887654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.8e-13 Score=117.74 Aligned_cols=86 Identities=15% Similarity=0.228 Sum_probs=56.6
Q ss_pred ceEEEEEecCChh----hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNPA----SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~----s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++. +.+.+ ..+... ...|+++|+||+|+.+..... ...++...+.+..
T Consensus 105 D~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 168 (406)
T TIGR03680 105 DGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSKEKAL----------ENYEEIKEFVKGTVA 168 (406)
T ss_pred CEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCHHHHH----------HHHHHHHhhhhhccc
Confidence 9999999999643 33333 222222 235789999999998643211 1122333333332
Q ss_pred -CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 186 -GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 186 -~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ .+++++||++|.|++++++++...+..
T Consensus 169 ~~-~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 169 EN-APIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CC-CeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 4 479999999999999999999986643
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=116.51 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred ceEEEEEecCCh----hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVNP----ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~----~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|++++ .+...+. .+... ...|+++|+||+|+.+..... ...++...+++..
T Consensus 110 D~~llVVDa~~~~~~~~t~~~l~-----~l~~~-~i~~iiVVlNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 173 (411)
T PRK04000 110 DGAILVIAANEPCPQPQTKEHLM-----ALDII-GIKNIVIVQNKIDLVSKERAL----------ENYEQIKEFVKGTVA 173 (411)
T ss_pred CEEEEEEECCCCCCChhHHHHHH-----HHHHc-CCCcEEEEEEeeccccchhHH----------HHHHHHHHHhccccC
Confidence 999999999964 3333332 22222 234789999999997643211 1122333444322
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
...+++++||++|.|++++++.+...+..+
T Consensus 174 ~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 174 ENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred CCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 125899999999999999999998876543
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=105.39 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=48.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 189 (228)
|++++|+|++++..-... .+...+... ...++|+|+||+|+........ .....+...+.+.+++ .+
T Consensus 102 d~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~ 170 (208)
T cd04166 102 DLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEEVF--------EEIVADYLAFAAKLGIEDIT 170 (208)
T ss_pred CEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHHHH--------HHHHHHHHHHHHHcCCCCce
Confidence 999999999875322211 222222222 2345788999999875311000 0112344556666663 35
Q ss_pred EEEecccCCCCHHHH
Q psy8274 190 YLECSALTQKGLKTV 204 (228)
Q Consensus 190 ~~evSa~~~~~v~~l 204 (228)
++++||++|.|+.+.
T Consensus 171 ii~iSA~~g~ni~~~ 185 (208)
T cd04166 171 FIPISALDGDNVVSR 185 (208)
T ss_pred EEEEeCCCCCCCccC
Confidence 899999999999753
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=106.27 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=103.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||.|++++....+...-+.....+..-.+.....++.++||||--.....+.+... -..+.+.+.|++..
T Consensus 82 NvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~--~s~lq~~~~a~q~A--- 156 (379)
T KOG1423|consen 82 NVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM--MSVLQNPRDAAQNA--- 156 (379)
T ss_pred CcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH--HHhhhCHHHHHhhC---
Confidence 7999999999999887554443333333333344455678999999996433222221111 01112233333222
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|.+++|+|+++.....+- .++..++.+ .++|-|||.||.|......
T Consensus 157 -------------------------------D~vvVv~Das~tr~~l~p--~vl~~l~~y-s~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 157 -------------------------------DCVVVVVDASATRTPLHP--RVLHMLEEY-SKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred -------------------------------CEEEEEEeccCCcCccCh--HHHHHHHHH-hcCCceeeccchhcchhhh
Confidence 999999999986665544 355555555 3689999999999876544
Q ss_pred HHHHHhh-ccCcccc---HHHHHHHHH---------HhC---CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKE-KKLAPIT---YPQGLSMAK---------EIG---AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~-~~~~~v~---~~~~~~~~~---------~~~---~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..=.+.. -....++ .+-.+++.. ..| +..+|.+||++|+||+++-++++.+...
T Consensus 203 ~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 203 LLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 2211000 0001111 111111111 111 2448999999999999999999987753
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=103.53 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++.+....- .++|.-|+-...-..+.+++ .-.+.+=|+||- +..|
T Consensus 169 NaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGL----------IEGA---------------- 221 (369)
T COG0536 169 NAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGL----------IEGA---------------- 221 (369)
T ss_pred CCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCccc----------cccc----------------
Confidence 7999999999997654 56777666444433444322 123555677763 3444
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh---HHHHHHhhHHHHhhhCC---CCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS---FENVRAKWYPEVRHHCP---STPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s---~~~~~~~~~~~l~~~~~---~~piilv~nK~ 153 (228)
..|.+++..|..++++. .+.++|.|++..+. .+.+. .+..+|..|.+ +.|.+||+||+
T Consensus 222 --s~G~GLG~~FLrHIERt-------------~vL~hviD~s~~~~~dp~~~~~-~i~~EL~~Y~~~L~~K~~ivv~NKi 285 (369)
T COG0536 222 --SEGVGLGLRFLRHIERT-------------RVLLHVIDLSPIDGRDPIEDYQ-TIRNELEKYSPKLAEKPRIVVLNKI 285 (369)
T ss_pred --ccCCCccHHHHHHHHhh-------------heeEEEEecCcccCCCHHHHHH-HHHHHHHHhhHHhccCceEEEEecc
Confidence 68899999999999885 99999999986553 55555 66777887753 68999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+....+..+ .....+.+..+...++.+||.++.|++++...+.+.+...
T Consensus 286 D~~~~~e~~~------------~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 286 DLPLDEEELE------------ELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcCHHHHH------------HHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 9665432111 1223333344433333399999999999999998877654
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=104.52 Aligned_cols=94 Identities=18% Similarity=0.098 Sum_probs=55.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHh---hc-c--------CccccHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLK---EK-K--------LAPITYPQGL 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~---~~-~--------~~~v~~~~~~ 179 (228)
|++++|.|++.+..-... .++..+... ++|+++|.||+|+.+.....+... .. . ...-+.+++.
T Consensus 111 D~~llVvda~~g~~~~d~--~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~ 186 (224)
T cd04165 111 DYAMLVVAANAGIIGMTK--EHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVV 186 (224)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeeccccee
Confidence 999999998765442222 445555544 689999999999875432111111 00 0 0000111222
Q ss_pred HHHHHh---CCceEEEecccCCCCHHHHHHHHH
Q psy8274 180 SMAKEI---GAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 180 ~~~~~~---~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
..++.. ...++|.+||.+|+|++++...+.
T Consensus 187 ~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 187 LAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222211 235899999999999999887664
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=109.00 Aligned_cols=150 Identities=23% Similarity=0.238 Sum_probs=105.0
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|.|++.. ...+-..|+.|.....+.++| +.+.+.||+|-.....
T Consensus 227 NvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d------------------------ 280 (454)
T COG0486 227 NVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDD------------------------ 280 (454)
T ss_pred CCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCcc------------------------
Confidence 799999999999765 345666777887888889999 5677889999643211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+..+++..+.....+ |.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.||...
T Consensus 281 --~VE~iGIeRs~~~i~~A--------------DlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 281 --VVERIGIERAKKAIEEA--------------DLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred --HHHHHHHHHHHHHHHhC--------------CEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccc
Confidence 13444555555555554 999999999986333333 2222 33346899999999999975
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .. .+ +..+-.+++.+|+++|.|++++.+.+...+...
T Consensus 340 ~~--------------~~---~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 340 IE--------------LE---SE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cc--------------cc---hh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 21 11 11 111113689999999999999999998877655
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=101.69 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=107.4
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||++.+++..- .+.|.-|+-...-.++..++.. .+.+=|+||-- +++
T Consensus 206 NAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI----------~GA---------------- 258 (366)
T KOG1489|consen 206 NAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGII----------EGA---------------- 258 (366)
T ss_pred CCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCcccc----------ccc----------------
Confidence 7999999999997653 4566666543333344444332 27777888742 232
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh---hhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP---ASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.-+++++-.|.-++++. +..+||.|++.. ..++.+. .+..+++.+. .+.|.++|+||+
T Consensus 259 --h~nkGlG~~FLrHiER~-------------~~l~fVvD~s~~~~~~p~~~~~-lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 259 --HMNKGLGYKFLRHIERC-------------KGLLFVVDLSGKQLRNPWQQLQ-LLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred --cccCcccHHHHHHHHhh-------------ceEEEEEECCCcccCCHHHHHH-HHHHHHHHHhhhhccCceEEEEecc
Confidence 45667778888888775 999999999988 7777776 6666777664 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
|+.+... .-...+++.+.-..++++||+++++++++++.+-.
T Consensus 323 D~~eae~---------------~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 323 DLPEAEK---------------NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CchhHHH---------------HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 9964311 11345666665334899999999999999987754
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=102.24 Aligned_cols=158 Identities=21% Similarity=0.199 Sum_probs=104.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++.+++... .++|.-|+-.-+-+ +++.....+|++||||--+...
T Consensus 178 NVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl------------------------- 230 (346)
T COG1084 178 NVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPL------------------------- 230 (346)
T ss_pred CCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCCh-------------------------
Confidence 8999999999998765 35566565221212 3334446889999999643220
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh--HHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS--FENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s--~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
...|--|.....+.+.|. ++|+|+||.+..+. ++... +++.++..... .|+++|.||+|+.+
T Consensus 231 ---~ErN~IE~qAi~AL~hl~-----------~~IlF~~D~Se~cgy~lE~Q~-~L~~eIk~~f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 231 ---EERNEIERQAILALRHLA-----------GVILFLFDPSETCGYSLEEQI-SLLEEIKELFK-APIVVVINKIDIAD 294 (346)
T ss_pred ---HHhcHHHHHHHHHHHHhc-----------CeEEEEEcCccccCCCHHHHH-HHHHHHHHhcC-CCeEEEEecccccc
Confidence 111223333444555555 99999999987665 45555 77777777665 89999999999986
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... .++.......-|......+++..+.+++.+-..+.....+.
T Consensus 295 ~e~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 295 EEK--------------LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred hhH--------------HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 532 22333334444545578889999999998887777765543
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-12 Score=96.23 Aligned_cols=78 Identities=26% Similarity=0.274 Sum_probs=60.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.|++|.|.+++.+...- .+.... ..|+|=|.||+|+.... ...+.+.++.+..|+-+.|
T Consensus 65 d~V~ll~dat~~~~~~pP------~fa~~f-~~pvIGVITK~Dl~~~~-------------~~i~~a~~~L~~aG~~~if 124 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPP------GFASMF-NKPVIGVITKIDLPSDD-------------ANIERAKKWLKNAGVKEIF 124 (143)
T ss_pred CEEEEEecCCCCCccCCc------hhhccc-CCCEEEEEECccCccch-------------hhHHHHHHHHHHcCCCCeE
Confidence 999999999987553221 112221 58999999999999421 3456678888889998899
Q ss_pred EecccCCCCHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~ 209 (228)
++|+.+|+||++|.+.+-
T Consensus 125 ~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 125 EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred EEECCCCcCHHHHHHHHh
Confidence 999999999999998763
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=99.04 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=48.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++..-.-... .++..+... ++| +|++.||+|+....+..+ ....+...+....|+
T Consensus 90 D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~---------~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 90 DGAILVVSATDGPMPQTR--EHLLLARQV--GVPYIVVFLNKADMVDDEELLE---------LVEMEVRELLSKYGFDGD 156 (195)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHH---------HHHHHHHHHHHHhccccc
Confidence 999999999864322221 333344443 466 778899999974322111 122345555555553
Q ss_pred -ceEEEecccCCCCH
Q psy8274 188 -VKYLECSALTQKGL 201 (228)
Q Consensus 188 -~~~~evSa~~~~~v 201 (228)
++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 68999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-12 Score=100.65 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=55.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcc---ccHHHHHHHHHHh--C
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP---ITYPQGLSMAKEI--G 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~--~ 186 (228)
|+++++.| .+|......|+..+.+. ..|+++|+||+|+..+.........+.... .-.+......... .
T Consensus 82 d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 155 (197)
T cd04104 82 DFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS 155 (197)
T ss_pred CEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888733 23444444677777766 689999999999965432110000000000 0001112222221 2
Q ss_pred CceEEEeccc--CCCCHHHHHHHHHHHhcC
Q psy8274 187 AVKYLECSAL--TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ~~~~~evSa~--~~~~v~~lf~~l~~~i~~ 214 (228)
..++|.+|+. .+.++..+.+.++..+..
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 3578999998 568999999888887754
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-12 Score=103.45 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=46.7
Q ss_pred ceEEEEEecCChhh---H----HHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHH
Q psy8274 112 DVFQICFSLVNPAS---F----ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt~~~s---~----~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~ 181 (228)
|++++|+|+++... | .... .+ .... .....|+++|+||+|+... ....+. ..++...+
T Consensus 102 d~~i~VvDa~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~~~---------i~~~l~~~ 169 (219)
T cd01883 102 DVAVLVVDARKGEFEAGFEKGGQTRE-HA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEERYDE---------IKKELSPF 169 (219)
T ss_pred CEEEEEEECCCCccccccccccchHH-HH-HHHH-HcCCCeEEEEEEccccccccccHHHHHH---------HHHHHHHH
Confidence 99999999998521 1 1111 22 1222 2233689999999999842 111110 11223334
Q ss_pred HHHhCC----ceEEEecccCCCCHH
Q psy8274 182 AKEIGA----VKYLECSALTQKGLK 202 (228)
Q Consensus 182 ~~~~~~----~~~~evSa~~~~~v~ 202 (228)
.+..+. .+++++||++|.|++
T Consensus 170 l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 170 LKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHcCCCcCCceEEEeecCcCCCCC
Confidence 445443 579999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=102.49 Aligned_cols=82 Identities=27% Similarity=0.313 Sum_probs=64.9
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++++|||++++. ||..+. .|+..+.. .++|++||+||+||..... +..+.+..+. .+| .++
T Consensus 38 D~viiV~d~~~p~~s~~~l~-r~l~~~~~--~~i~~vIV~NK~DL~~~~~------------~~~~~~~~~~-~~g-~~v 100 (245)
T TIGR00157 38 DQIVIVSSAVLPELSLNQLD-RFLVVAEA--QNIEPIIVLNKIDLLDDED------------MEKEQLDIYR-NIG-YQV 100 (245)
T ss_pred CEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEECcccCCCHH------------HHHHHHHHHH-HCC-CeE
Confidence 9999999999888 898887 89877654 4799999999999975422 3333344443 477 489
Q ss_pred EEecccCCCCHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~ 210 (228)
+++||++|.|++++|..+..
T Consensus 101 ~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEecCCchhHHHHHhhhcC
Confidence 99999999999999988754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-11 Score=106.61 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=46.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... +.+..+... ++|.+ ++.||+|+.+..+..+ ...++...+++.++.
T Consensus 100 D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~---------~~~~~i~~~l~~~~~~~~ 166 (394)
T TIGR00485 100 DGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRELLSEYDFPGD 166 (394)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHHH---------HHHHHHHHHHHhcCCCcc
Confidence 999999999874322221 222233333 56755 6899999986432111 112346666766653
Q ss_pred -ceEEEecccCCC
Q psy8274 188 -VKYLECSALTQK 199 (228)
Q Consensus 188 -~~~~evSa~~~~ 199 (228)
.+++++||++|.
T Consensus 167 ~~~ii~vSa~~g~ 179 (394)
T TIGR00485 167 DTPIIRGSALKAL 179 (394)
T ss_pred CccEEECcccccc
Confidence 589999999875
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=106.01 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... .++..+... ++| +|++.||+|+.+..+..+ .-.++...+.+..++
T Consensus 100 d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~---------~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 100 DGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELLE---------LVEMEVRELLSEYDFPGD 166 (394)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHHH---------HHHHHHHHHHHHhCCCcC
Confidence 999999999864322221 223333333 577 678899999975322111 112345566665553
Q ss_pred -ceEEEecccCCC--------CHHHHHHHHHHHhc
Q psy8274 188 -VKYLECSALTQK--------GLKTVFDEAIRAVL 213 (228)
Q Consensus 188 -~~~~evSa~~~~--------~v~~lf~~l~~~i~ 213 (228)
.+++++||++|. ++.++++.+...+.
T Consensus 167 ~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 167 DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 57788888777654
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-11 Score=105.34 Aligned_cols=122 Identities=21% Similarity=0.216 Sum_probs=82.2
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
+|+.+.+.++|||||-+|..--...+..| +++
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac------------------------------------------------~G~ 152 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAAC------------------------------------------------DGA 152 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhc------------------------------------------------Cce
Confidence 47889999999999999875444444444 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS 194 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS 194 (228)
|+|.|....-.-+-+. .++..++ .+..+|.|.||+|+...+.. .+ ..+...+... ...+.+.+|
T Consensus 153 lLvVDA~qGvqAQT~a-nf~lAfe---~~L~iIpVlNKIDlp~adpe----------~V-~~q~~~lF~~-~~~~~i~vS 216 (650)
T KOG0462|consen 153 LLVVDASQGVQAQTVA-NFYLAFE---AGLAIIPVLNKIDLPSADPE----------RV-ENQLFELFDI-PPAEVIYVS 216 (650)
T ss_pred EEEEEcCcCchHHHHH-HHHHHHH---cCCeEEEeeeccCCCCCCHH----------HH-HHHHHHHhcC-CccceEEEE
Confidence 9999998644333332 2222332 25678889999999875320 01 0112222222 225789999
Q ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCC
Q psy8274 195 ALTQKGLKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~~i~~~~~~~~ 220 (228)
|++|.|++++|+.+++.+.-++-...
T Consensus 217 AK~G~~v~~lL~AII~rVPpP~~~~d 242 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRVPPPKGIRD 242 (650)
T ss_pred eccCccHHHHHHHHHhhCCCCCCCCC
Confidence 99999999999999999987665443
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=104.69 Aligned_cols=145 Identities=21% Similarity=0.308 Sum_probs=93.8
Q ss_pred ChhhhHHhhhhCCCCCCCCceeeec-cceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 3 GKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 3 GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+..+-..........-+... ....+.++ +..-.+.++|||||+.|..++.-=..-+
T Consensus 17 GKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vt----------------- 79 (509)
T COG0532 17 GKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVT----------------- 79 (509)
T ss_pred CccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccc-----------------
Confidence 9999999988766654433333222 23444443 1234678889999999987776433333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|.+++|.|++| |++.+.+. .++. -++|++++.||+|..+
T Consensus 80 -------------------------------DIaILVVa~dDGv~pQTiEAI~-----hak~--a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 80 -------------------------------DIAILVVAADDGVMPQTIEAIN-----HAKA--AGVPIVVAINKIDKPE 121 (509)
T ss_pred -------------------------------cEEEEEEEccCCcchhHHHHHH-----HHHH--CCCCEEEEEecccCCC
Confidence 99999999997 44443332 2233 3899999999999986
Q ss_pred chHHH--HHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 158 DKETI--EKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 158 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+..- .++.+. .+ ....| |-..++++||++|+|+.+|+..++...
T Consensus 122 ~np~~v~~el~~~---gl-------~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 122 ANPDKVKQELQEY---GL-------VPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCHHHHHHHHHHc---CC-------CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 43311 111111 11 11223 236799999999999999999887654
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=100.32 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCChhhhHHhhhhCCCCCC----------CCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGE----------YIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|+|||||+|++.+..+... ..+|+. ..+...+..+|..+.+.+|||||........ ..+.....++.+
T Consensus 14 g~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~-~~~~~i~~yi~~ 92 (276)
T cd01850 14 GLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS-DCWKPIVDYIDD 92 (276)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch-hhHHHHHHHHHH
Confidence 7999999999998877533 234442 3334556667888999999999976543211 011110001111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
+.. .+......+.. ++.-...++|+++++.+.+. ..+....-..+..+. ..+|+++|
T Consensus 93 q~~-----------------~~l~~e~~~~r--~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~---~~v~vi~V 149 (276)
T cd01850 93 QFD-----------------QYLREESRIKR--NPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS---KRVNIIPV 149 (276)
T ss_pred HHH-----------------HHHHHHhhhcc--cccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh---ccCCEEEE
Confidence 100 00000000000 01112334588888888764 222222113444444 36899999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL 196 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~ 196 (228)
+||+|+....+ ...........++.++ +++|.....
T Consensus 150 inK~D~l~~~e----------~~~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 150 IAKADTLTPEE----------LKEFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred EECCCcCCHHH----------HHHHHHHHHHHHHHcC-CceECCCCC
Confidence 99999976432 1123344566677777 467766553
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=99.37 Aligned_cols=155 Identities=22% Similarity=0.218 Sum_probs=99.6
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+|++++.. +..+...+.-+.....+.+.+ ...+.+.||.|.-+-- |+.+-.+
T Consensus 202 NAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~L---P~~LV~A---------------- 261 (411)
T COG2262 202 NAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDL---PHPLVEA---------------- 261 (411)
T ss_pred cccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccC---ChHHHHH----------------
Confidence 799999999999654 334444555555566666654 2355667999964321 1111100
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|.. .|+.. ...|.+++|.|++++.....+. .....+.... ..+|+++|.||+|+...
T Consensus 262 -----------Fks----TLEE~------~~aDlllhVVDaSdp~~~~~~~-~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 262 -----------FKS----TLEEV------KEADLLLHVVDASDPEILEKLE-AVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred -----------HHH----HHHHh------hcCCEEEEEeecCChhHHHHHH-HHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 111 11111 1129999999999997777765 5566666653 56999999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. ......... ...+.+||++|.|++.++..+...+...
T Consensus 320 ~~-----------------~~~~~~~~~-~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 320 EE-----------------ILAELERGS-PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred hh-----------------hhhhhhhcC-CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 21 111122211 2488999999999999999999987743
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=113.26 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=89.7
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcC----------------eEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDG----------------KPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
++||||+..+.+....+.....+..... ..+.++. +.-.+.+|||||++.|..++...+..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a- 550 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA- 550 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC-
Confidence 6899999999876654433333322211 1122221 011378999999998876655444555
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~ 141 (228)
|++++|+|+++ +.++..+. .+...
T Consensus 551 -----------------------------------------------DivlLVVDa~~Gi~~qT~e~I~-----~lk~~- 577 (1049)
T PRK14845 551 -----------------------------------------------DLAVLVVDINEGFKPQTIEAIN-----ILRQY- 577 (1049)
T ss_pred -----------------------------------------------CEEEEEEECcccCCHhHHHHHH-----HHHHc-
Confidence 99999999987 55555442 33333
Q ss_pred CCCCEEEEEeCCCCCCc-h-----HHHHHHhhccCc-------------------cccHHHHHHHHHHhCCceEEEeccc
Q psy8274 142 PSTPIILVGTKLDLRDD-K-----ETIEKLKEKKLA-------------------PITYPQGLSMAKEIGAVKYLECSAL 196 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~-~-----~~~~~~~~~~~~-------------------~v~~~~~~~~~~~~~~~~~~evSa~ 196 (228)
++|+++|+||+|+... . +..+....+..+ .+..+......+-.+.+++++|||+
T Consensus 578 -~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~ 656 (1049)
T PRK14845 578 -KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAK 656 (1049)
T ss_pred -CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcC
Confidence 6899999999999632 0 000000000000 0000000000111245789999999
Q ss_pred CCCCHHHHHHHHHH
Q psy8274 197 TQKGLKTVFDEAIR 210 (228)
Q Consensus 197 ~~~~v~~lf~~l~~ 210 (228)
+|+|+++++..+..
T Consensus 657 tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 657 TGEGIPELLMMVAG 670 (1049)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999987754
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=101.92 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=97.0
Q ss_pred ChhhhHHhhhhCC--CCC---------------CCCcee-eeccceeEEE-cCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 3 GKTCLLISYTTNA--FPG---------------EYIPTV-FDNYSANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 3 GKTsli~~~~~~~--~~~---------------~~~~t~-~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||..|++... +.. +.--|+ .......+.. +|+.+.+.++|||||-+|.--....+..|
T Consensus 21 GKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAAC 100 (603)
T COG0481 21 GKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAAC 100 (603)
T ss_pred CcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhC
Confidence 9999999998432 211 111122 1222223332 67889999999999988753222222333
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
.+.++|.|.+..---+-+. ..|..+.+ +
T Consensus 101 ------------------------------------------------EGalLvVDAsQGveAQTlA-N~YlAle~---~ 128 (603)
T COG0481 101 ------------------------------------------------EGALLVVDASQGVEAQTLA-NVYLALEN---N 128 (603)
T ss_pred ------------------------------------------------CCcEEEEECccchHHHHHH-HHHHHHHc---C
Confidence 9999999999754444444 44444444 3
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH-HHHHHHhC--CceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG-LSMAKEIG--AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~--~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
..++-|.||+||..... +.. +....-.| +...+.+|||+|.||+++++.++..+..++-+.
T Consensus 129 LeIiPViNKIDLP~Adp---------------ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 129 LEIIPVLNKIDLPAADP---------------ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred cEEEEeeecccCCCCCH---------------HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 66788889999987521 122 22222233 345788999999999999999999998877543
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=106.39 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=107.6
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||.|++++.. ..+++...+-+.........+.. +++.|.||-........ ...++
T Consensus 13 NvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~------DE~Va----------- 73 (653)
T COG0370 13 NVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSE------DEKVA----------- 73 (653)
T ss_pred CccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCc------hHHHH-----------
Confidence 899999999999654 45677766666566666666654 78889999765544322 11111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..-.+...| |+++.|.|.+|-+.--.+. -++.+. +.|++++.|++|..+..
T Consensus 74 ---------------r~~ll~~~~--------D~ivnVvDAtnLeRnLylt----lQLlE~--g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 74 ---------------RDFLLEGKP--------DLIVNVVDATNLERNLYLT----LQLLEL--GIPMILALNMIDEAKKR 124 (653)
T ss_pred ---------------HHHHhcCCC--------CEEEEEcccchHHHHHHHH----HHHHHc--CCCeEEEeccHhhHHhc
Confidence 122233444 9999999999865543332 123333 78999999999987642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+ .-+..++.+.+| +|.+++||+.|.|++++...+.+......
T Consensus 125 ------------Gi-~ID~~~L~~~LG-vPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 125 ------------GI-RIDIEKLSKLLG-VPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ------------CC-cccHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 22 234668888999 59999999999999999999987655444
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=103.73 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=54.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|+|+++...-... .++..+... ++|.+ ++.||+|+.+..+..+ ....++..+.+.+++
T Consensus 100 D~~llVvda~~g~~~qt~--e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~---------~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 100 DGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLE---------LVEMEVRELLSKYDFPGD 166 (396)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEecCCcchHHHHH---------HHHHHHHHHHHHcCCCcC
Confidence 999999999874322211 233333332 57855 6799999975322111 122345566666543
Q ss_pred -ceEEEecccCCC----------CHHHHHHHHHHHhc
Q psy8274 188 -VKYLECSALTQK----------GLKTVFDEAIRAVL 213 (228)
Q Consensus 188 -~~~~evSa~~~~----------~v~~lf~~l~~~i~ 213 (228)
.+++++||++|. ++.++++.+...+.
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 579999999984 56777777766543
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-11 Score=111.85 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCChhhhHHhhhhCCCC-------------C-------CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFP-------------G-------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-------------~-------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+...-. . ++..|+...+ ..+......+.+|||||+.++...+...+
T Consensus 18 ~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtPG~~df~~~~~~~l 94 (687)
T PRK13351 18 DAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTPGHIDFTGEVERSL 94 (687)
T ss_pred CCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 79999999999853210 0 0111221111 12223346889999999987765544445
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
+.+ |++++|+|+++..+..... .| ..+...
T Consensus 95 ~~a------------------------------------------------D~~ilVvd~~~~~~~~~~~-~~-~~~~~~ 124 (687)
T PRK13351 95 RVL------------------------------------------------DGAVVVFDAVTGVQPQTET-VW-RQADRY 124 (687)
T ss_pred HhC------------------------------------------------CEEEEEEeCCCCCCHHHHH-HH-HHHHhc
Confidence 554 9999999999887766543 33 334333
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
++|+++|+||+|+...
T Consensus 125 --~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 125 --GIPRLIFINKMDRVGA 140 (687)
T ss_pred --CCCEEEEEECCCCCCC
Confidence 6899999999998864
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-11 Score=97.50 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc-CCCC--ccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPL--SYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 77 (228)
|+|||+|..+|..+.+...+... .......+ -+.....+.++|+|||.+.+. +... +...+
T Consensus 13 ~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~-------------- 76 (181)
T PF09439_consen 13 GSGKTALFSQLVNGKTVPTVTSM-ENNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNA-------------- 76 (181)
T ss_dssp TSSHHHHHHHHHHSS---B---S-SEEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGE--------------
T ss_pred CCCHHHHHHHHhcCCcCCeeccc-cCCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhC--------------
Confidence 79999999999998654333222 11111111 123345788999999988753 1111 12222
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH---CPSTPIILVGTKL 153 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~ 153 (228)
.+||||.|.+ ++..+....+.++..+... ...+|++|++||+
T Consensus 77 ----------------------------------k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 77 ----------------------------------KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp ----------------------------------EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred ----------------------------------CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 9999999997 4566777664555555433 2468999999999
Q ss_pred CCCCch
Q psy8274 154 DLRDDK 159 (228)
Q Consensus 154 Dl~~~~ 159 (228)
|+....
T Consensus 123 Dl~~A~ 128 (181)
T PF09439_consen 123 DLFTAK 128 (181)
T ss_dssp TSTT--
T ss_pred cccccC
Confidence 998653
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-12 Score=96.15 Aligned_cols=150 Identities=18% Similarity=0.277 Sum_probs=102.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||++.+..++. +.+.||.-.+ +-.+.+.+ +++..+|.+|+..-+..|..++..+
T Consensus 30 NAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v----------------- 88 (193)
T KOG0077|consen 30 NAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQV----------------- 88 (193)
T ss_pred CCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhh-----------------
Confidence 7999999999998775 3677776221 22334455 6788899999998888999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++.+|+-|.+.|.+.. .-++.+...- ...|+++.+||+|....
T Consensus 89 -------------------------------~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 89 -------------------------------DAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred -------------------------------ceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 9999999999999999887 3333333221 46899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh--------C--CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI--------G--AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~--~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
-+..+..-.. .+..++-.+ + ....|.||...+.+.-+.|.|+-..
T Consensus 137 ~se~~l~~~l--------~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 137 ASEDELRFHL--------GLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ccHHHHHHHH--------HHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 3221110000 011111111 1 1346778888888888888776543
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=103.07 Aligned_cols=164 Identities=20% Similarity=0.151 Sum_probs=115.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++..+..... ..|.-|.-..|- -+++.+...+++.||||--+..
T Consensus 178 NVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~p-------------------------- 229 (620)
T KOG1490|consen 178 NVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRP-------------------------- 229 (620)
T ss_pred CCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcc--------------------------
Confidence 79999999999877653 234444322222 2456677788999999854321
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHH-hhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRA-KWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~-~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.+..|..|....++.++|. .+|+++.|++..+++.-..+ +++..|....-+.|+|+|+||+|+..+
T Consensus 230 --lEdrN~IEmqsITALAHLr-----------aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 230 --EEDRNIIEMQIITALAHLR-----------SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRP 296 (620)
T ss_pred --hhhhhHHHHHHHHHHHHhh-----------hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCc
Confidence 3445667777778888887 89999999998776644431 666677766778999999999999876
Q ss_pred hHHHHHHhhccCccccHHHH--HHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQG--LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++ ++.+.. ......-|.++++++|+.+.+||.++-..+++.++..+-
T Consensus 297 ed------------L~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 297 ED------------LDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred cc------------cCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHHHH
Confidence 43 333332 222223343689999999999999999999998876543
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.7e-10 Score=91.72 Aligned_cols=160 Identities=16% Similarity=0.248 Sum_probs=90.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeE-EE-cCeEEeeeeeeCCCCcccccC-----CCCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV-MV-DGKPINLGLWDTAGQEDYDRL-----RPLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~-~~-~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~ 73 (228)
|+||||+.+-...+..+.++. ..+.+..... .+ ....+.+.+||.||+..+... ....++++
T Consensus 9 ~SGKTSi~~vIF~~~~p~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v---------- 77 (232)
T PF04670_consen 9 RSGKTSIRSVIFHKYSPRDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV---------- 77 (232)
T ss_dssp TSSHHHHHHHHHS---GGGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE----------
T ss_pred CCChhhHHHHHHcCCCchhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc----------
Confidence 799999777766654333322 1122221111 22 233468999999999765432 22233333
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHH--HhhHHHHhhhCCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVR--AKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~--~~~~~~l~~~~~~~piilv~n 151 (228)
.++|+|+|+.+.+-...+. ...+..+.+++++..+.+..+
T Consensus 78 --------------------------------------~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiH 119 (232)
T PF04670_consen 78 --------------------------------------GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIH 119 (232)
T ss_dssp --------------------------------------SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE
T ss_pred --------------------------------------CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999999998544333332 144556677889999999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC--CceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+|+..+....+.+... .+.....+...+ -..++.+|--+ +.+.++|-.+++.++...
T Consensus 120 K~D~l~~~~r~~~~~~~------~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 120 KMDLLSEDEREEIFRDI------QQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp -CCCS-HHHHHHHHHHH------HHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTTH
T ss_pred ecccCCHHHHHHHHHHH------HHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcccH
Confidence 99998765544433222 122233333333 24577777666 689999999999887433
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=95.97 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=50.8
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
+..+.+.+|||||+..|.......++.+ |+++
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~a------------------------------------------------D~~i 101 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLC------------------------------------------------DGAL 101 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhc------------------------------------------------CeeE
Confidence 4478899999999998776555555555 9999
Q ss_pred EEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 116 ICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 116 ~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
+|+|++++.+.... .++..... .++|+++|+||+|+.
T Consensus 102 lVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 102 VVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred EEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 99999987666543 22333322 258999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.8e-10 Score=104.52 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|+|..||.+|.||+.+++.++..+..+..
T Consensus 248 ~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~ 278 (526)
T PRK00741 248 LTPVFFGSALNNFGVQEFLDAFVEWAPAPQP 278 (526)
T ss_pred eEEEEEeecccCcCHHHHHHHHHHHCCCCCc
Confidence 4689999999999999999999999987653
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.1e-10 Score=96.71 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHH-HHHHHhcC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFD-EAIRAVLC 214 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~-~l~~~i~~ 214 (228)
..|+++|+||+|+..... . ...+........++.+||+.+.+++++.+ .+.+.+..
T Consensus 214 ~KPvI~VlNK~Dl~~~~~------------~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 214 SKPMVIAANKADIPDAEN------------N----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CCcEEEEEEHHHccChHH------------H----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 369999999999764321 0 01111223335799999999999999998 57777654
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=86.03 Aligned_cols=159 Identities=18% Similarity=0.110 Sum_probs=95.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|.+++..-......|.|.+...+ +.+++. +.+.|.||...-.- . ..+.+.|.
T Consensus 34 NVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv-~--------k~~~e~w~------- 94 (200)
T COG0218 34 NVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKV-P--------KEVKEKWK------- 94 (200)
T ss_pred cccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccC-C--------HHHHHHHH-------
Confidence 7999999999998663333444444443322 355553 77889999753221 0 01111111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..+.+-+..... ..+++++.|+-.+-.-.+. ++++.+... ++|++||+||+|.....
T Consensus 95 -----~~i~~YL~~R~~--------------L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 95 -----KLIEEYLEKRAN--------------LKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKS 151 (200)
T ss_pred -----HHHHHHHhhchh--------------heEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChh
Confidence 111111111111 1899999998766555444 677777777 89999999999988754
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHh----CCc-eEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEI----GAV-KYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~-~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+..+ .....++.+ ... .++.+|+..+.|++++-..+.+.+..
T Consensus 152 ~~~k-------------~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 152 ERNK-------------QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHH-------------HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3211 112222222 111 17788999999999999888876643
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=99.92 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=47.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++....-... ..+..+... ++| +|++.||+|+.+..+..+. ...+...+.+..++
T Consensus 100 D~~ilVvda~~g~~~qt~--~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~---------~~~~l~~~l~~~~~~~~ 166 (409)
T CHL00071 100 DGAILVVSAADGPMPQTK--EHILLAKQV--GVPNIVVFLNKEDQVDDEELLEL---------VELEVRELLSKYDFPGD 166 (409)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHH---------HHHHHHHHHHHhCCCCC
Confidence 999999999864322221 333333333 578 7788999999864322111 12345556665543
Q ss_pred -ceEEEecccCCCC
Q psy8274 188 -VKYLECSALTQKG 200 (228)
Q Consensus 188 -~~~~evSa~~~~~ 200 (228)
.+++++||.+|.|
T Consensus 167 ~~~ii~~Sa~~g~n 180 (409)
T CHL00071 167 DIPIVSGSALLALE 180 (409)
T ss_pred cceEEEcchhhccc
Confidence 6899999999874
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=101.91 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|.|.-||.+|.||+.+++.++..+..+.+
T Consensus 249 ~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~ 279 (527)
T TIGR00503 249 MTPVFFGTALGNFGVDHFLDGLLQWAPKPEA 279 (527)
T ss_pred eeEEEEeecccCccHHHHHHHHHHHCCCCcc
Confidence 4678999999999999999999999887653
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-10 Score=95.50 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=30.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++...... . .++...... ++|+++++||+|+...
T Consensus 96 D~~IlVvda~~g~~~~~-~-~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 96 DSAVMVIDAAKGVEPQT-R-KLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred CEEEEEEECCCCccHHH-H-HHHHHHHhc--CCCEEEEEECCccCCC
Confidence 99999999987543221 1 344333333 6899999999998764
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=82.91 Aligned_cols=67 Identities=27% Similarity=0.374 Sum_probs=48.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+++++||+.++..++..+ |...+...+ .+.|.++++||.|+.+. +.+..+++. .+
T Consensus 48 ~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~------------~~~~~~~~~---------~~ 103 (124)
T smart00010 48 DVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEE------------RQVATEEGL---------EF 103 (124)
T ss_pred CEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhh------------CcCCHHHHH---------HH
Confidence 999999999999998754 666665544 36889999999998542 223333333 35
Q ss_pred EEecccCCCCHH
Q psy8274 191 LECSALTQKGLK 202 (228)
Q Consensus 191 ~evSa~~~~~v~ 202 (228)
+++|++++.|+.
T Consensus 104 ~~~s~~~~~~~~ 115 (124)
T smart00010 104 AETSAKTPEEGE 115 (124)
T ss_pred HHHhCCCcchhh
Confidence 567889999884
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-09 Score=102.15 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++....... .++..+... ++|+++++||+|+...
T Consensus 100 D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred CEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 999999999986555433 333344433 6899999999999753
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=90.70 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=93.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||+|..++..+.+.+.+....+. .....+... .+.+.|.||+.+.+.-...++...
T Consensus 48 dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~----------------- 106 (238)
T KOG0090|consen 48 DSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHN----------------- 106 (238)
T ss_pred CCCceeeeeehhcCCccCeeeeeccc--eeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccc-----------------
Confidence 68999999999998654332222211 222222222 278899999987764333333310
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~ 156 (228)
.++-+++||.|.. ...-...+.+-+|..+...+ ..+|+++++||.|+.
T Consensus 107 ----------------------------~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 107 ----------------------------YSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred ----------------------------ccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 0118999999974 34444555534455555442 368999999999987
Q ss_pred Cc--hHHHHHHhhccCc----------cccHH----------HHHH--HHHHh-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DD--KETIEKLKEKKLA----------PITYP----------QGLS--MAKEI-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~--~~~~~~~~~~~~~----------~v~~~----------~~~~--~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.. .+.++..+++... .+..+ ++.. |..-. .-+.|.+.|++++ +++++-+|+.+.
T Consensus 159 tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 159 TAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 54 3344433333211 11111 1111 11111 1156999999998 899999998765
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=98.41 Aligned_cols=152 Identities=23% Similarity=0.301 Sum_probs=111.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||.|++.|++..+.+.+.++....|.. .+...|+..++.+.|++-. ....+...
T Consensus 435 ~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k--------------------- 492 (625)
T KOG1707|consen 435 NCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK--------------------- 492 (625)
T ss_pred cCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc---------------------
Confidence 689999999999999988777777555543 3455677778888887754 22221111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. -.||++.++||++++.||..+. ..++..... ...|+++|++|+|+....
T Consensus 493 ---------------------------e-~~cDv~~~~YDsS~p~sf~~~a-~v~~~~~~~-~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 493 ---------------------------E-AACDVACLVYDSSNPRSFEYLA-EVYNKYFDL-YKIPCLMVATKADLDEVP 542 (625)
T ss_pred ---------------------------c-ceeeeEEEecccCCchHHHHHH-HHHHHhhhc-cCCceEEEeeccccchhh
Confidence 1 2349999999999999999987 444433333 579999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. + .... -..+++++++.+...+|+++... .++|..+......+..
T Consensus 543 Q----------~-~~iq-pde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~Ph~ 587 (625)
T KOG1707|consen 543 Q----------R-YSIQ-PDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQYPHI 587 (625)
T ss_pred h----------c-cCCC-hHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhCCCc
Confidence 1 1 2222 27899999988889999996444 8999999998887763
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-09 Score=96.09 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=52.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEE-EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPII-LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|++.+..-... .++..+... ++|.+ ++.||+|+....+..+. -..+...+....++
T Consensus 100 D~~llVVDa~~g~~~qt~--~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~---------~~~~i~~~l~~~~~~~~ 166 (396)
T PRK00049 100 DGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELLEL---------VEMEVRELLSKYDFPGD 166 (396)
T ss_pred CEEEEEEECCCCCchHHH--HHHHHHHHc--CCCEEEEEEeecCCcchHHHHHH---------HHHHHHHHHHhcCCCcc
Confidence 999999999865332221 333444433 57876 57899999753221111 11234444444432
Q ss_pred -ceEEEecccCCC----------CHHHHHHHHHHHh
Q psy8274 188 -VKYLECSALTQK----------GLKTVFDEAIRAV 212 (228)
Q Consensus 188 -~~~~evSa~~~~----------~v~~lf~~l~~~i 212 (228)
.+++++||+++. ++..+++.+...+
T Consensus 167 ~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 167 DTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 689999999875 4556666666543
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=96.75 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=91.2
Q ss_pred ChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 3 GKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 3 GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||+..|-+..........+..... ..+.+ +|+ .+.+.|||||..|..++..-..-+
T Consensus 165 GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vt----------------- 225 (683)
T KOG1145|consen 165 GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVT----------------- 225 (683)
T ss_pred ChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccc-----------------
Confidence 999999999877765443333322221 22222 554 566789999998887765433333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
|.+++|..++| +.+.+ .|.+.. .++|+|++.||+|..
T Consensus 226 -------------------------------DIvVLVVAadDGVmpQT~E--------aIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 226 -------------------------------DIVVLVVAADDGVMPQTLE--------AIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred -------------------------------cEEEEEEEccCCccHhHHH--------HHHHHHhcCCCEEEEEeccCCC
Confidence 99999999987 33333 344433 389999999999976
Q ss_pred CchHHHHHHhhccCccccHHHHHHH-------HHHh-CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSM-------AKEI-GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+ .+.+.+- .+.+ |-.+.+++||++|.|++.|-+.++.+.
T Consensus 267 ~a~---------------pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 267 GAN---------------PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCC---------------HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 532 1222221 1223 336799999999999999999887754
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=96.78 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
.....+.++|+||+++|.......+..+ |++|
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~a------------------------------------------------D~aI 113 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQA------------------------------------------------DCAV 113 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhc------------------------------------------------cEEE
Confidence 3456788899999988865444444444 9999
Q ss_pred EEEecCChhhHH-------HHHHhhHHHHhhhCCCC-CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 116 ICFSLVNPASFE-------NVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 116 ~v~Dvt~~~s~~-------~~~~~~~~~l~~~~~~~-piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
+|+|+++. +|+ ...++| ..+.. .++ ++|++.||+|+.+.....+. -....++...+++..|+
T Consensus 114 lVVda~~G-~~e~g~~~~~qT~eh~-~~~~~--~gi~~iIV~vNKmD~~~~~~~~~~------~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 114 LIIDSTTG-GFEAGISKDGQTREHA-LLAFT--LGVKQMICCCNKMDATTPKYSKAR------YDEIVKEVSSYLKKVGY 183 (447)
T ss_pred EEEEcccC-ceecccCCCchHHHHH-HHHHH--cCCCcEEEEEEcccCCchhhhHHH------HHHHHHHHHHHHHHcCC
Confidence 99999873 232 112122 12222 256 47888999998732110000 00123456777777763
Q ss_pred ----ceEEEecccCCCCHHH
Q psy8274 188 ----VKYLECSALTQKGLKT 203 (228)
Q Consensus 188 ----~~~~evSa~~~~~v~~ 203 (228)
.+|+++||++|+|+.+
T Consensus 184 ~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 184 NPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CcccceEEEEeccccccccc
Confidence 5799999999999854
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.7e-09 Score=88.19 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=96.5
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
+||||||++.+++..- .++|.-|........+..+| .++|+.|+||--.-.+.-.. ++ .+.
T Consensus 73 svGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~g--rG-~~v------------- 134 (365)
T COG1163 73 SVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRG--RG-RQV------------- 134 (365)
T ss_pred CccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCC--Cc-cee-------------
Confidence 5899999999997654 56788787777777777777 57788999974221111100 00 000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh-HHHHHHhh-------------------------
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS-FENVRAKW------------------------- 133 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s-~~~~~~~~------------------------- 133 (228)
....+++|.+++|.|+..+.+ .+.+.+.+
T Consensus 135 -------------------------lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~ 189 (365)
T COG1163 135 -------------------------LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIR 189 (365)
T ss_pred -------------------------eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEE
Confidence 001233499999999986665 43333211
Q ss_pred ------------------HHH----------------------HhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccc
Q psy8274 134 ------------------YPE----------------------VRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173 (228)
Q Consensus 134 ------------------~~~----------------------l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 173 (228)
+.+ +...+-.+|.++|.||.|+...
T Consensus 190 i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--------------- 254 (365)
T COG1163 190 INGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--------------- 254 (365)
T ss_pred EecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---------------
Confidence 111 1111124699999999998873
Q ss_pred cHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++...+.+. ...+.+||+.+.|++++.+.+.+.+-
T Consensus 255 --e~~~~l~~~---~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 255 --EELERLARK---PNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred --HHHHHHHhc---cceEEEecccCCCHHHHHHHHHHhhC
Confidence 234444443 36899999999999999999998763
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=96.90 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhCC--c
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIGA--V 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ 188 (228)
|++++|+|+.....-.... .| ..+... ...++++|.||+|+.+... ..+ ...++...+.+.+++ .
T Consensus 105 D~allVVda~~G~~~qt~~-~~-~~~~~~-~~~~iivviNK~D~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~ 172 (406)
T TIGR02034 105 DLAVLLVDARKGVLEQTRR-HS-YIASLL-GIRHVVLAVNKMDLVDYDEEVFE---------NIKKDYLAFAEQLGFRDV 172 (406)
T ss_pred CEEEEEEECCCCCccccHH-HH-HHHHHc-CCCcEEEEEEecccccchHHHHH---------HHHHHHHHHHHHcCCCCc
Confidence 9999999987643221111 11 122222 2346889999999975321 100 011223344444443 4
Q ss_pred eEEEecccCCCCHHH
Q psy8274 189 KYLECSALTQKGLKT 203 (228)
Q Consensus 189 ~~~evSa~~~~~v~~ 203 (228)
+++++||++|.|+++
T Consensus 173 ~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 173 TFIPLSALKGDNVVS 187 (406)
T ss_pred cEEEeecccCCCCcc
Confidence 699999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.2e-10 Score=93.84 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=29.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|.|+++...-... .++..+... ++|++++.||+|+.+
T Consensus 89 D~ailVVDa~~g~~~~t~--~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTE--TVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred CEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 999999999875332221 334444444 689999999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-10 Score=104.22 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++........ ++..+... +.|+++|+||+|+...
T Consensus 85 D~vllvvd~~~~~~~~~~~--~~~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTET--VWRQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred CeEEEEEeCCCCcCHHHHH--HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 9999999999876665442 33333333 6899999999998743
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-09 Score=95.37 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=51.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 186 (228)
|++++|.|+++...-... +.+..+... ++| +|++.||+|+.......+. -..+...+....+
T Consensus 149 D~allVVda~~g~~~qt~--e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~---------i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 149 DGGILVVSAPDGPMPQTK--EHILLARQV--GVPSLVVFLNKVDVVDDEELLEL---------VEMELRELLSFYKFPGD 215 (447)
T ss_pred CEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHH---------HHHHHHHHHHHhCCCCC
Confidence 999999999765332221 333344433 688 5788999999853221111 0112333333332
Q ss_pred CceEEEeccc---CCCC-------HHHHHHHHHHHhc
Q psy8274 187 AVKYLECSAL---TQKG-------LKTVFDEAIRAVL 213 (228)
Q Consensus 187 ~~~~~evSa~---~~~~-------v~~lf~~l~~~i~ 213 (228)
.++++++|+. +|.| +.++++.+...+.
T Consensus 216 ~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 216 EIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred cceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2578888876 4555 6777777766554
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=98.74 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhC---C
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIG---A 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~---~ 187 (228)
|++++|+|++....-.... .+ ..+... ...|++||.||+|+.+... ..+. ...+...+.+.++ .
T Consensus 132 D~allVVDa~~G~~~qt~~-~~-~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~---------i~~~l~~~~~~~~~~~~ 199 (474)
T PRK05124 132 DLAILLIDARKGVLDQTRR-HS-FIATLL-GIKHLVVAVNKMDLVDYSEEVFER---------IREDYLTFAEQLPGNLD 199 (474)
T ss_pred CEEEEEEECCCCccccchH-HH-HHHHHh-CCCceEEEEEeeccccchhHHHHH---------HHHHHHHHHHhcCCCCC
Confidence 9999999997643211111 11 112212 1257899999999975321 1110 1112333343333 2
Q ss_pred ceEEEecccCCCCHHHH
Q psy8274 188 VKYLECSALTQKGLKTV 204 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~l 204 (228)
.+++++||++|.|++++
T Consensus 200 ~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 200 IRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ceEEEEEeecCCCcccc
Confidence 57999999999999864
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=91.06 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=31.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+++....... ..+..+... ++|+++++||+|+...
T Consensus 89 D~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 89 DAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence 999999999987655433 223333333 6899999999998864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-09 Score=97.16 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 186 (228)
|++++|+|+++...-... +++..+... ++| ++++.||+|+.+..+..+. -.++...+.+..|
T Consensus 169 D~ailVVda~~G~~~qt~--e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~---------i~~~i~~~l~~~g~~~~ 235 (478)
T PLN03126 169 DGAILVVSGADGPMPQTK--EHILLAKQV--GVPNMVVFLNKQDQVDDEELLEL---------VELEVRELLSSYEFPGD 235 (478)
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEecccccCHHHHHHH---------HHHHHHHHHHhcCCCcC
Confidence 999999999875433222 333334333 677 7788999999764321111 1124555555543
Q ss_pred CceEEEecccCCCC
Q psy8274 187 AVKYLECSALTQKG 200 (228)
Q Consensus 187 ~~~~~evSa~~~~~ 200 (228)
..+++++|+.++.+
T Consensus 236 ~~~~vp~Sa~~g~n 249 (478)
T PLN03126 236 DIPIISGSALLALE 249 (478)
T ss_pred cceEEEEEcccccc
Confidence 25799999998853
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-09 Score=100.37 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhCC--c
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIGA--V 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~ 188 (228)
|++++|+|++....-... ..+..+... ...|++||.||+|+.+.. +..+. ...+...+.+.+++ .
T Consensus 129 D~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~---------i~~~i~~~~~~~~~~~~ 196 (632)
T PRK05506 129 DLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE---------IVADYRAFAAKLGLHDV 196 (632)
T ss_pred CEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhHHHHH---------HHHHHHHHHHHcCCCCc
Confidence 999999999764322111 111122222 235788999999997521 11110 11233344455553 4
Q ss_pred eEEEecccCCCCHHH
Q psy8274 189 KYLECSALTQKGLKT 203 (228)
Q Consensus 189 ~~~evSa~~~~~v~~ 203 (228)
+++++||++|.|+.+
T Consensus 197 ~iipiSA~~g~ni~~ 211 (632)
T PRK05506 197 TFIPISALKGDNVVT 211 (632)
T ss_pred cEEEEecccCCCccc
Confidence 699999999999974
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.5e-09 Score=93.41 Aligned_cols=163 Identities=22% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|.|++... ..+...|..|.....+.++|. .+.+.||+|-..- .
T Consensus 278 NvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--~v~L~DTAGiRe~-------------------------~ 330 (531)
T KOG1191|consen 278 NVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--PVRLSDTAGIREE-------------------------S 330 (531)
T ss_pred CCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--EEEEEeccccccc-------------------------c
Confidence 7999999999998764 445556777777888888895 5566799995430 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEec--CChhhHHHHHHhhHHHHhhh-------CCCCCEEEE
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL--VNPASFENVRAKWYPEVRHH-------CPSTPIILV 149 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dv--t~~~s~~~~~~~~~~~l~~~-------~~~~piilv 149 (228)
....+.++++..+....++ |++++|+|. ++-++-..+. ..+.....- -.+.|++++
T Consensus 331 ~~~iE~~gI~rA~k~~~~a--------------dvi~~vvda~~~~t~sd~~i~-~~l~~~~~g~~~~~~~~~~~~~i~~ 395 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERA--------------DVILLVVDAEESDTESDLKIA-RILETEGVGLVVIVNKMEKQRIILV 395 (531)
T ss_pred CChhHHHhHHHHHHHHhhc--------------CEEEEEecccccccccchHHH-HHHHHhccceEEEeccccccceEEE
Confidence 1123455666666666666 999999999 4444444433 333332221 124799999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH--hC-CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE--IG-AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.||+|+...-+ ...... ..+... ++ .....++|+++++|++.+...+...+.....
T Consensus 396 ~nk~D~~s~~~-----------~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 396 ANKSDLVSKIP-----------EMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred echhhccCccc-----------cccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 99999987521 122110 011111 11 1346679999999999999999988876544
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-09 Score=93.09 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=45.9
Q ss_pred ceEEEEEecCChh---hHH---HHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHH
Q psy8274 112 DVFQICFSLVNPA---SFE---NVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~ 181 (228)
|++++|.|+++.. .|. ...++| ..+... .+| +|++.||+|+... ....+ ...++...+
T Consensus 110 D~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~---------~i~~~i~~~ 177 (446)
T PTZ00141 110 DVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTVNYSQERYD---------EIKKEVSAY 177 (446)
T ss_pred CEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccchhhHHHHH---------HHHHHHHHH
Confidence 9999999998642 110 111122 223222 565 6789999995421 11111 112234444
Q ss_pred HHHhCC----ceEEEecccCCCCHHH
Q psy8274 182 AKEIGA----VKYLECSALTQKGLKT 203 (228)
Q Consensus 182 ~~~~~~----~~~~evSa~~~~~v~~ 203 (228)
....|+ ++++++|+.+|+|+.+
T Consensus 178 l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 178 LKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHhcCCCcccceEEEeecccCCCccc
Confidence 444443 6799999999999964
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=94.15 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=55.4
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH--hCCc
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE--IGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~ 188 (228)
|++++|.|++++. .-+-.+ ++ ..+. ...-.|+|+|.||+|+.+.....+ ..++...+.+. ....
T Consensus 142 D~alLVVda~~g~~~~qT~e-hl-~i~~-~lgi~~iIVvlNKiDlv~~~~~~~----------~~~ei~~~l~~~~~~~~ 208 (460)
T PTZ00327 142 DAALLLIAANESCPQPQTSE-HL-AAVE-IMKLKHIIILQNKIDLVKEAQAQD----------QYEEIRNFVKGTIADNA 208 (460)
T ss_pred CEEEEEEECCCCccchhhHH-HH-HHHH-HcCCCcEEEEEecccccCHHHHHH----------HHHHHHHHHHhhccCCC
Confidence 9999999998641 111111 22 1222 222356899999999986432111 11222223222 1236
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+++++||++|.|+++|++.+...+..+
T Consensus 209 ~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 209 PIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred eEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 899999999999999999998766543
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.4e-08 Score=77.94 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=91.4
Q ss_pred CCChhhhHHhhhhCCCC-CCC-C-ceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEY-I-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~-~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|.+++.... ... . +...........+++. .+.++||||-...... ...+..
T Consensus 10 g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~--------~~~~~~-------- 71 (196)
T cd01852 10 GAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVS--------PEQLSK-------- 71 (196)
T ss_pred CCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCC--------hHHHHH--------
Confidence 89999999999976532 221 1 1111112223344554 6788999997654210 000110
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~D 154 (228)
+..+...... ...|++++|.|+.+ .+-.+. ..+..+.+... -.++++|.|+.|
T Consensus 72 ---------------~i~~~~~~~~------~g~~~illVi~~~~-~t~~d~--~~l~~l~~~fg~~~~~~~ivv~T~~d 127 (196)
T cd01852 72 ---------------EIVRCLSLSA------PGPHAFLLVVPLGR-FTEEEE--QAVETLQELFGEKVLDHTIVLFTRGD 127 (196)
T ss_pred ---------------HHHHHHHhcC------CCCEEEEEEEECCC-cCHHHH--HHHHHHHHHhChHhHhcEEEEEECcc
Confidence 1111111111 12299999999876 333222 45556655543 257888899999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec-----ccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS-----ALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS-----a~~~~~v~~lf~~l~~~i~~ 214 (228)
.....+. +.... -.....+.+.+..| ..|+..+ +..+.++++|++.+-+.+..
T Consensus 128 ~l~~~~~-~~~~~-----~~~~~l~~l~~~c~-~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 128 DLEGGTL-EDYLE-----NSCEALKRLLEKCG-GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred ccCCCcH-HHHHH-----hccHHHHHHHHHhC-CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 7654321 11111 11245666777766 3565555 44577899999988887764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=84.37 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHH-HHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKT-VFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~-lf~~l~~~i~ 213 (228)
.+|+++|+||.|+..... ....+.+. +...++.+||+.+.++++ +.+.+++.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~----------------~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp 271 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----------------NIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIP 271 (396)
T ss_pred CCCEEEEEEchhcccchH----------------HHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCC
Confidence 379999999999764211 11122222 445799999999999999 5566555443
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=73.75 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|+|||||+|++++... .....++........+.+++..+ .++||||-..
T Consensus 9 ~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~ 59 (116)
T PF01926_consen 9 NVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGIND 59 (116)
T ss_dssp TSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSS
T ss_pred CCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcc
Confidence 7999999999997543 22233333222223445566544 6899999543
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-09 Score=92.96 Aligned_cols=150 Identities=23% Similarity=0.329 Sum_probs=112.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
++|||+|++||+++.|..+ ..+.+..|.+.+.++++...+.+.|.+|... ..+....
T Consensus 40 ~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wv----------------- 96 (749)
T KOG0705|consen 40 QSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV----------------- 96 (749)
T ss_pred cCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhc-----------------
Confidence 4799999999999998744 3445667888999999999999999998432 1122223
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++||||.+.|..+|+.+. .+.-.+..+ ...+|+++++++.-....
T Consensus 97 -------------------------------davIfvf~~~d~~s~q~v~-~l~~~l~~~r~r~~i~l~lvgtqd~iS~~ 144 (749)
T KOG0705|consen 97 -------------------------------DAVVFVFSVEDEQSFQAVQ-ALAHEMSSYRNISDLPLILVGTQDHISAK 144 (749)
T ss_pred -------------------------------cceEEEEEeccccCHHHHH-HHHhhcccccccccchHHhhcCcchhhcc
Confidence 9999999999999999886 443334433 246899999987644433
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .+.+...++..++-.+....+|+.++.+|.+++.+|.++..++...
T Consensus 145 ~----------~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 145 R----------PRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred c----------ccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 2 2566666666666665545899999999999999999999877654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=93.70 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|.+..||.++.|++.+++.+...+..+.
T Consensus 251 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 281 (691)
T PRK12739 251 EFFPVLCGSAFKNKGVQPLLDAVVDYLPSPL 281 (691)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCCChh
Confidence 3457888899999999999999999887654
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=85.37 Aligned_cols=84 Identities=24% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
++|.+++|+|++++.++....+.|+..+... ++|+++|+||+||.+... ...+.....+.++ .+
T Consensus 80 niD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~-------------~~~~~~~~~~~~g-~~ 143 (298)
T PRK00098 80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLE-------------EARELLALYRAIG-YD 143 (298)
T ss_pred cCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHH-------------HHHHHHHHHHHCC-Ce
Confidence 4499999999999887766655887776543 789999999999974311 1122344455677 48
Q ss_pred EEEecccCCCCHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~ 209 (228)
++++||+++.|+++++..+.
T Consensus 144 v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEEEeCCCCccHHHHHhhcc
Confidence 99999999999999998763
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-07 Score=90.09 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|++..||.++.||+.+++.++..+..+.
T Consensus 253 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 253 EIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred cEEEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 4467888899999999999999999888764
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=86.18 Aligned_cols=151 Identities=18% Similarity=0.224 Sum_probs=98.9
Q ss_pred CCCCCCceeeeccceeEEE--------cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccc
Q psy8274 16 FPGEYIPTVFDNYSANVMV--------DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGL 87 (228)
Q Consensus 16 ~~~~~~~t~~~~~~~~~~~--------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (228)
+.++|.||..|.+..+... .-..+.+.+||++|+...+..|..++.++
T Consensus 130 ~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v------------------------ 185 (317)
T cd00066 130 SDPDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDV------------------------ 185 (317)
T ss_pred hCCCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCC------------------------
Confidence 3457888887665443322 22357889999999999999999999988
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh----------hhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCC
Q psy8274 88 KTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP----------ASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDL 155 (228)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~----------~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl 155 (228)
+++++|.|.++- ..+.... ..+..+-+. . .+.|++|++||.|+
T Consensus 186 ------------------------~~iifvv~lsd~d~~~~e~~~~nrl~esl-~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 186 ------------------------TAIIFVVALSEYDQVLFEDESTNRMQESL-NLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred ------------------------CEEEEEEEchhcccccccCCcchHHHHHH-HHHHHHHhCccccCCCEEEEccChHH
Confidence 999999999873 3344444 333333332 2 47899999999997
Q ss_pred CCchH----HHHHHhhccCccccHHHHHHHHHHh---------CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 156 RDDKE----TIEKLKEKKLAPITYPQGLSMAKEI---------GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 156 ~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
....- ...-+.......-+.+++..|.+.. ..+....++|.+-.+++.+|..+...|++.
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 65321 0011111111123455565555541 123456788998899999999999888764
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=96.93 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCChhhhHHhhhhC---------------CCCCC---CCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTN---------------AFPGE---YIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+.+|+.. .+... +..|+.... ......++..+.+.+|||||+.+|.......+.
T Consensus 29 ~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~ 108 (720)
T TIGR00490 29 DHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMR 108 (720)
T ss_pred CCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHH
Confidence 68999999999853 11111 112332211 222335666788999999999876533222233
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|+|+.+....... .....+..
T Consensus 109 ~a------------------------------------------------D~~llVvda~~g~~~~t~--~~~~~~~~-- 136 (720)
T TIGR00490 109 AV------------------------------------------------DGAIVVVCAVEGVMPQTE--TVLRQALK-- 136 (720)
T ss_pred hc------------------------------------------------CEEEEEEecCCCCCccHH--HHHHHHHH--
Confidence 33 999999999874333222 12222222
Q ss_pred CCCCEEEEEeCCCCCC
Q psy8274 142 PSTPIILVGTKLDLRD 157 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~ 157 (228)
.+.|+++++||+|+..
T Consensus 137 ~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 137 ENVKPVLFINKVDRLI 152 (720)
T ss_pred cCCCEEEEEEChhccc
Confidence 2578889999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-08 Score=78.16 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=55.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHH-----HHhC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA-----KEIG 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~ 186 (228)
|++++|+|++++.. .|...+.....+.|+++|+||+|+.... ........+. +..+
T Consensus 36 d~il~VvD~~~~~~------~~~~~l~~~~~~~~~ilV~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 36 ALVVHVVDIFDFPG------SLIPRLRLFGGNNPVILVGNKIDLLPKD-------------KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred cEEEEEEECccCCC------ccchhHHHhcCCCcEEEEEEchhcCCCC-------------CCHHHHHHHHHHHHHhhcC
Confidence 99999999987542 2222332223468999999999997531 2222223332 2223
Q ss_pred --CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 187 --AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 187 --~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...++++||++|.|+++++..+...+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 136899999999999999999988763
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-08 Score=82.32 Aligned_cols=83 Identities=27% Similarity=0.250 Sum_probs=63.1
Q ss_pred CCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 110 RCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
++|.+++|+|++++. ++..+. .|+..+... ++|+++|+||+||..... ......+...++ .
T Consensus 78 nvD~vllV~d~~~p~~s~~~ld-r~L~~~~~~--~ip~iIVlNK~DL~~~~~--------------~~~~~~~~~~~g-~ 139 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNPRLLD-RYLVAAEAA--GIEPVIVLTKADLLDDEE--------------EELELVEALALG-Y 139 (287)
T ss_pred eCCEEEEEEEcCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEEHHHCCChHH--------------HHHHHHHHHhCC-C
Confidence 449999999999988 888776 788777654 689999999999976411 111223334467 5
Q ss_pred eEEEecccCCCCHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+++++||+++.|+++++..+..
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999887653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-08 Score=81.37 Aligned_cols=94 Identities=16% Similarity=0.095 Sum_probs=60.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-----------HHHHHHhhccCccccHHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-----------ETIEKLKEKKLAPITYPQGLS 180 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~v~~~~~~~ 180 (228)
|.++.+.|..|+.==.+. +++..+....-+.|++++.|.+|...+. ..++++.+. -.+...+
T Consensus 119 DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-----k~~~~~~ 191 (296)
T COG3596 119 DLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-----KAEALGR 191 (296)
T ss_pred cEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-----HHHHHHH
Confidence 989999998876432222 4444554444458999999999987652 122221111 0112334
Q ss_pred HHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 181 ~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
++++ .-|++.+|...+.|++++...++..+..
T Consensus 192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHhh--cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 4444 2367888889999999999999998764
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-08 Score=83.86 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 108 KKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 108 ~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
..++|.+++|+|++++. ....+. .|+..... .++|++||+||+||..... ........+.+|
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~Ld-R~L~~a~~--~~ip~ILVlNK~DLv~~~~--------------~~~~~~~~~~~g 149 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLS-RFLVKAES--TGLEIVLCLNKADLVSPTE--------------QQQWQDRLQQWG 149 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHH-HHHHHHHH--CCCCEEEEEEchhcCChHH--------------HHHHHHHHHhcC
Confidence 45569999999999876 343444 67665533 3799999999999975421 112223335678
Q ss_pred CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+ .++++||+++.|+++++..+...
T Consensus 150 ~-~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 150 Y-QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred C-eEEEEEcCCCCCHHHHhhhhccc
Confidence 4 89999999999999999888643
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=73.54 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=59.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|-.+++++|-..- -+.... ..|+|=|.+|.||.++ -+.+...+|.++.|.-++|
T Consensus 66 dvi~~v~~and~~s~f~p------~f~~~~-~k~vIgvVTK~DLaed--------------~dI~~~~~~L~eaGa~~IF 124 (148)
T COG4917 66 DVIIYVHAANDPESRFPP------GFLDIG-VKKVIGVVTKADLAED--------------ADISLVKRWLREAGAEPIF 124 (148)
T ss_pred ceeeeeecccCccccCCc------cccccc-ccceEEEEecccccch--------------HhHHHHHHHHHHcCCcceE
Confidence 999999999998764332 111111 3568988999999964 2334567888889988999
Q ss_pred EecccCCCCHHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~ 210 (228)
++|+.++.||++++.-+..
T Consensus 125 ~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 125 ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred EEeccCcccHHHHHHHHHh
Confidence 9999999999999988764
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=76.11 Aligned_cols=80 Identities=23% Similarity=0.164 Sum_probs=53.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE--EEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-hCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI--ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE-IGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi--ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~ 188 (228)
+.++.|+|+++.++... .+. +++.. ++++||+|+.+..+ ...+......+. ....
T Consensus 114 ~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~------------~~~~~~~~~~~~~~~~~ 171 (199)
T TIGR00101 114 DLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG------------ADLGVMERDAKKMRGEK 171 (199)
T ss_pred CcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc------------ccHHHHHHHHHHhCCCC
Confidence 88999999997655321 111 13333 78899999985311 112222333333 2336
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++++||++|.|++++|+++.+..+
T Consensus 172 ~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 172 PFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 8999999999999999999997654
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=82.89 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++||++++..++..+. .|+..... .++|++||+||+||...... ....+.....+.+| .
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ld-r~L~~a~~--~~i~~VIVlNK~DL~~~~~~-----------~~~~~~~~~y~~~g-~ 183 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIID-RYLVACET--LGIEPLIVLNKIDLLDDEGR-----------AFVNEQLDIYRNIG-Y 183 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEECccCCCcHHH-----------HHHHHHHHHHHhCC-C
Confidence 3469999999999999998887 88775543 36899999999999764210 01122233345567 4
Q ss_pred eEEEecccCCCCHHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
+++++||+++.|+++++..+...
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhhC
Confidence 89999999999999999988653
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.8e-07 Score=74.99 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=56.3
Q ss_pred ceEEEEEec---CChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH------HHHHHhhc----c---CccccH
Q psy8274 112 DVFQICFSL---VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE------TIEKLKEK----K---LAPITY 175 (228)
Q Consensus 112 d~vi~v~Dv---t~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~------~~~~~~~~----~---~~~v~~ 175 (228)
.+++.|.|. +++.+|-.-- +|..---+..+.|.|+|-||+|+.+..- ..|.+..- . ...+..
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNM--lYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~ 226 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNM--LYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTR 226 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHH--HHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhh
Confidence 666777774 3455564421 1222222334799999999999998642 11111110 0 001111
Q ss_pred HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 176 ~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.....+-.-+.-+..+-|||.+|.|.+++|..+-+.+-
T Consensus 227 SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 227 SMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred hHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 11111222223367889999999999999999887664
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.1e-07 Score=79.28 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=56.9
Q ss_pred ceEEEEE-ecC----ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 112 DVFQICF-SLV----NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 112 d~vi~v~-Dvt----~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
+..|+|. |.+ .++.+..+.+.|+..|... ++|+++|.||.|-..+ .+.+.+..+..+++
T Consensus 146 tIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~--------------et~~l~~~l~eky~ 209 (492)
T TIGR02836 146 TIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHP--------------ETEALRQELEEKYD 209 (492)
T ss_pred cEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCc--------------hhHHHHHHHHHHhC
Confidence 7888887 653 3456777777899999888 8999999999994332 12233445556678
Q ss_pred CceEEEecccC--CCCHHHHHHHHHHHh
Q psy8274 187 AVKYLECSALT--QKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ~~~~~evSa~~--~~~v~~lf~~l~~~i 212 (228)
.+++.+|+.. .+.|..+|..++..+
T Consensus 210 -vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 210 -VPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred -CceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 5777877763 345666666555443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-08 Score=84.26 Aligned_cols=81 Identities=22% Similarity=0.390 Sum_probs=59.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHH----HHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL----SMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~ 187 (228)
+++++|+|+.|..+ .|...+.+...+.|+++|+||+|+... .+..++.. .+++.+|+
T Consensus 65 ~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k-------------~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 65 ALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPK-------------SVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred cEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCC-------------CCCHHHHHHHHHHHHHHcCC
Confidence 89999999976542 455566655557899999999999753 12333333 34556674
Q ss_pred c--eEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 V--KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~--~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .++++||++|.|++++|..+.+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2 48999999999999999998664
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=72.19 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=56.6
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|++++...... .+...+.. .+.|+++|+||+|+..... . .+...+.+..+ .++
T Consensus 13 aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~--~~~~~~~~~~~-~~~ 73 (156)
T cd01859 13 SDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------L--EKWKSIKESEG-IPV 73 (156)
T ss_pred CCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------H--HHHHHHHHhCC-CcE
Confidence 4999999999876543321 22222222 2689999999999964311 0 11112333345 478
Q ss_pred EEecccCCCCHHHHHHHHHHHhc
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++||+++.|++++++.+.+.+.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=73.61 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=51.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 190 (228)
+..+.|.|+++...... . .... ...|.++++||+|+..... ....+.....+.+ ...++
T Consensus 125 ~~~i~Vvd~~~~d~~~~---~---~~~~--~~~a~iiv~NK~Dl~~~~~------------~~~~~~~~~l~~~~~~~~i 184 (207)
T TIGR00073 125 HMRVVLLSVTEGDDKPL---K---YPGM--FKEADLIVINKADLAEAVG------------FDVEKMKADAKKINPEAEI 184 (207)
T ss_pred CeEEEEEecCcccchhh---h---hHhH--HhhCCEEEEEHHHccccch------------hhHHHHHHHHHHhCCCCCE
Confidence 55677888876543211 1 1111 1467899999999975311 1122233333332 22589
Q ss_pred EEecccCCCCHHHHHHHHHHHh
Q psy8274 191 LECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++||++|.|++++|+++.+..
T Consensus 185 ~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 185 ILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-07 Score=83.68 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=58.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH------h
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------I 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~ 185 (228)
|+|++|.|.+...+..+. .+.+.+.+.....|+++|.||+|+.+..+ -..+....+.+. .
T Consensus 260 DvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree------------ddkE~Lle~V~~~L~q~~i 325 (741)
T PRK09866 260 SAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS------------DDADQVRALISGTLMKGCI 325 (741)
T ss_pred CEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc------------chHHHHHHHHHHHHHhcCC
Confidence 999999999876555543 44555655533369999999999864311 112333333321 1
Q ss_pred CCceEEEecccCCCCHHHHHHHHHH
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
....+|++||+.|.|++++++.+..
T Consensus 326 ~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 326 TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2346999999999999999999877
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-08 Score=81.89 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=50.0
Q ss_pred ceEEEEEecC---ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch--HHHHHHhhc-cCcc-c---cHHHHHHH
Q psy8274 112 DVFQICFSLV---NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK--ETIEKLKEK-KLAP-I---TYPQGLSM 181 (228)
Q Consensus 112 d~vi~v~Dvt---~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~-~~~~-v---~~~~~~~~ 181 (228)
-+++++.|.. ++..|-... ++......+-+.|.+.|.||+|+.... ...+..... .... + ...-...+
T Consensus 124 ~~~v~LvD~~~~~~~~~f~s~~--L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i 201 (238)
T PF03029_consen 124 LVVVFLVDSSFCSDPSKFVSSL--LLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEI 201 (238)
T ss_dssp -EEEEEE-GGG-SSHHHHHHHH--HHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHH
T ss_pred eEEEEEEecccccChhhHHHHH--HHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 6788888975 555555442 222222333479999999999998733 111100000 0000 0 11111222
Q ss_pred HH---HhCCc-eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 182 AK---EIGAV-KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 182 ~~---~~~~~-~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++ .++.. +++.+|+.+++++++++..+-+++
T Consensus 202 ~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 202 AELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22 23545 899999999999999999887654
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.7e-06 Score=73.76 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCCCCCch-----HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 143 STPIILVGTKLDLRDDK-----ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+|++||++|||....- ...+.+. .......+||-.+| ...+.+|++...|++-++.-+...++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfd------fiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFD------FIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHH------HHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhcC
Confidence 35999999999985321 1222211 22345678899999 589999999999999999999988763
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-07 Score=76.99 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=47.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 189 (228)
|+.|++.|.- ..+.... .--..|.....-.-++|+.||+||.+-++..-. --..+-..|+..+|. ..
T Consensus 111 dlAIlLVDAR--~Gvl~QT-rRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~--------~I~~dy~~fa~~L~~~~~~ 179 (431)
T COG2895 111 DLAILLVDAR--KGVLEQT-RRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE--------AIVADYLAFAAQLGLKDVR 179 (431)
T ss_pred cEEEEEEecc--hhhHHHh-HHHHHHHHHhCCcEEEEEEeeecccccCHHHHH--------HHHHHHHHHHHHcCCCcce
Confidence 9999999973 2332222 101111111112457788899999975331111 112345677888764 45
Q ss_pred EEEecccCCCCHH
Q psy8274 190 YLECSALTQKGLK 202 (228)
Q Consensus 190 ~~evSa~~~~~v~ 202 (228)
++++||+.|+||-
T Consensus 180 ~IPiSAl~GDNV~ 192 (431)
T COG2895 180 FIPISALLGDNVV 192 (431)
T ss_pred EEechhccCCccc
Confidence 8999999999975
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8e-07 Score=74.59 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=59.2
Q ss_pred ceEEEEEecCChhhHHHHHH-hhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccC---------------ccccH
Q psy8274 112 DVFQICFSLVNPASFENVRA-KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKL---------------APITY 175 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~-~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---------------~~v~~ 175 (228)
+++++|+|.+...+..+... .|+........+.|+++|.||+|+....+..+....... ....
T Consensus 130 ~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~- 208 (253)
T PRK13768 130 SVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS- 208 (253)
T ss_pred eEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH-
Confidence 99999999976544333321 233332322347999999999999876442221111100 0000
Q ss_pred HHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 176 PQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 176 ~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+.....+..+ ..+++++|++++.|++++++++...+
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 01112223333 24789999999999999999997765
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-07 Score=79.14 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=84.4
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
+.+.+||++|+...+..|..++.++ ++++||.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v------------------------------------------------~~IiFvv 215 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNV------------------------------------------------TAIIFCV 215 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCC------------------------------------------------CEEEEEE
Confidence 5678999999999999999999888 9999999
Q ss_pred ecCCh----------hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHHH
Q psy8274 119 SLVNP----------ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSMA 182 (228)
Q Consensus 119 Dvt~~----------~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~~ 182 (228)
|+++- ..+.... ..+..+-+. ..+.|++|++||.|+....- ...-+...... .+.+.+..|.
T Consensus 216 dlSd~d~~~~Ed~~~nrl~esl-~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~-~~~~~~~~yi 293 (342)
T smart00275 216 ALSEYDQVLEEDESTNRMQESL-NLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGP-NDYEAAAKFI 293 (342)
T ss_pred ECcccccchhccCcchHHHHHH-HHHHHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCC-CCHHHHHHHH
Confidence 99962 2354444 333343332 24789999999999875321 11111111111 2444555554
Q ss_pred HHh-----C-----CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 183 KEI-----G-----AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 183 ~~~-----~-----~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.. . .+.++.++|.+-.++..+|+.+...|++.
T Consensus 294 ~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 294 KQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 431 1 13456788888899999999988877653
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=76.58 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=45.6
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCc--cccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLA--PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+|++||++|+|....-+... .++.. .+-......+|-.+|+ ..+.+|++...|++.++.-+...+..
T Consensus 197 ipi~VV~tksD~~~~Lek~~---~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKET---DWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred cceEEEEecccHHHHHhhhc---ccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhcc
Confidence 59999999999765311000 00001 1122336677778895 78889999999999999998888764
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-06 Score=74.57 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=87.5
Q ss_pred ChhhhHHhhhhCC--CCCCCC--ceeee--c---------cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchh
Q psy8274 3 GKTCLLISYTTNA--FPGEYI--PTVFD--N---------YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSM 67 (228)
Q Consensus 3 GKTsli~~~~~~~--~~~~~~--~t~~~--~---------~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~ 67 (228)
|||||+..++.++ |.+... ..+.| + ..+.-.++-+.+.+.|.|||||.+|-.--.....-.
T Consensus 17 GKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MV---- 92 (603)
T COG1217 17 GKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMV---- 92 (603)
T ss_pred CcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhc----
Confidence 9999999999654 432110 01111 1 122323344447888999999998854332222222
Q ss_pred HHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCC
Q psy8274 68 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|+++++.|..+ |++=.-+. + .+. .+.
T Consensus 93 --------------------------------------------DgvlLlVDA~EGpMPQTrFVlk-K---Al~---~gL 121 (603)
T COG1217 93 --------------------------------------------DGVLLLVDASEGPMPQTRFVLK-K---ALA---LGL 121 (603)
T ss_pred --------------------------------------------ceEEEEEEcccCCCCchhhhHH-H---HHH---cCC
Confidence 99999999876 33322221 1 111 145
Q ss_pred CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------hCCceEEEecccCCC----------CHHHHHHH
Q psy8274 145 PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE-------IGAVKYLECSALTQK----------GLKTVFDE 207 (228)
Q Consensus 145 piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~evSa~~~~----------~v~~lf~~ 207 (228)
+.|||.||+|....+.. +. .+++..+.-. ++ .|++..|++.|. ++.-||+.
T Consensus 122 ~PIVVvNKiDrp~Arp~---------~V--vd~vfDLf~~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~ 189 (603)
T COG1217 122 KPIVVINKIDRPDARPD---------EV--VDEVFDLFVELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFET 189 (603)
T ss_pred CcEEEEeCCCCCCCCHH---------HH--HHHHHHHHHHhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHH
Confidence 56777899999875431 01 1122233322 45 478888988764 78889999
Q ss_pred HHHHhcCCCC
Q psy8274 208 AIRAVLCPVP 217 (228)
Q Consensus 208 l~~~i~~~~~ 217 (228)
+++.+..+.-
T Consensus 190 I~~hvp~P~~ 199 (603)
T COG1217 190 ILDHVPAPKG 199 (603)
T ss_pred HHHhCCCCCC
Confidence 9999887663
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=69.90 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=43.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCCchHHHHHHhhccCccccHHHHHH-HHH-HhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS-MAK-EIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~ 188 (228)
|++++|.|.+........ .++..+... +.|. ++|.||+|+.+.....+. +. .+... +.. .....
T Consensus 105 DvVllviDa~~~~~~~~~--~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~--------~~-~~l~~~~~~~~~~~~ 171 (225)
T cd01882 105 DLVLLLIDASFGFEMETF--EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRK--------TK-KRLKHRFWTEVYQGA 171 (225)
T ss_pred CEEEEEEecCcCCCHHHH--HHHHHHHHc--CCCeEEEEEeccccCCcHHHHHH--------HH-HHHHHHHHHhhCCCC
Confidence 999999999865443332 344444443 4674 559999999753221111 11 11211 222 22336
Q ss_pred eEEEecccCCC
Q psy8274 189 KYLECSALTQK 199 (228)
Q Consensus 189 ~~~evSa~~~~ 199 (228)
+++.+||++..
T Consensus 172 ki~~iSa~~~~ 182 (225)
T cd01882 172 KLFYLSGIVHG 182 (225)
T ss_pred cEEEEeeccCC
Confidence 89999999874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=7e-07 Score=72.75 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=37.6
Q ss_pred CCCceEEEEEecCChhhHHHHH--HhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 109 KRCDVFQICFSLVNPASFENVR--AKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~--~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
.+++++|+|||+...+--.++. ++-++.+.++.+...++....|.||.....
T Consensus 80 ~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 80 RNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 3449999999998775544442 134455666777788899999999987654
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=70.49 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=65.0
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|+.++|.+.+. |++-+++- .+.-. .-..+++|-||+||...+. ...++++..+|.+--
T Consensus 111 DgAlLvIaANEpcPQPQT~EHl~-----AleIi-gik~iiIvQNKIDlV~~E~----------AlE~y~qIk~FvkGt~A 174 (415)
T COG5257 111 DGALLVIAANEPCPQPQTREHLM-----ALEII-GIKNIIIVQNKIDLVSRER----------ALENYEQIKEFVKGTVA 174 (415)
T ss_pred cceEEEEecCCCCCCCchHHHHH-----HHhhh-ccceEEEEecccceecHHH----------HHHHHHHHHHHhccccc
Confidence 99999999875 44444442 22211 1256889999999998654 334556666666542
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
.-.|++++||..+.|++.+++.+...|..+..+
T Consensus 175 e~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 175 ENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred CCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 225899999999999999999999999876554
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=65.68 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=48.6
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|+.++.+.... .+...+.....+.|+++|.||+|+..... ..+...+.+..+ .++
T Consensus 12 aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~~-~~i 74 (141)
T cd01857 12 SDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEEQ--------------RKAWAEYFKKEG-IVV 74 (141)
T ss_pred CCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHHH--------------HHHHHHHHHhcC-CeE
Confidence 3999999999987765421 22233332224689999999999975321 123344555566 589
Q ss_pred EEecccCCCC
Q psy8274 191 LECSALTQKG 200 (228)
Q Consensus 191 ~evSa~~~~~ 200 (228)
+++||+++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998754
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.6e-06 Score=72.20 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|.+++... ...|..|..+.....+.+.+. ...+++.|+||-.
T Consensus 31 NvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 31 NVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 7999999999986654 234444432322233333221 2358899999954
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=64.98 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=54.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+.... ++....-...+.|+++|.||+|+..... + ......+....+ ..++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~~~~~p~IiVlNK~Dl~~~~~------------~-~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIKEKGKKLILVLNKADLVPKEV------------L-RKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHhcCCCCEEEEEechhcCCHHH------------H-HHHHHHHHhhCC-ceEE
Confidence 689999999988766532 2221111123689999999999975321 0 000112222333 5689
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q psy8274 192 ECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i 212 (228)
.+||+++.|++++++.+....
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EEeccCCcChhhHHHHHHHHh
Confidence 999999999999999887653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=73.11 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
||||||++|++++... .....++...........+| ..+.++||||....... .
T Consensus 48 GVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~------------~---------- 103 (313)
T TIGR00991 48 GVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYI------------N---------- 103 (313)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHH------------H----------
Confidence 8999999999997653 11222211111112223345 57899999996543110 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl 155 (228)
+...+.++..+.. ...|++++|..++.. .+......++..+...+. -.+.|||.|+.|.
T Consensus 104 ----------e~~~~~ik~~l~~-------~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 104 ----------DQAVNIIKRFLLG-------KTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred ----------HHHHHHHHHHhhc-------CCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 0001111111110 012999999665432 233222245556665542 2578999999997
Q ss_pred CCc
Q psy8274 156 RDD 158 (228)
Q Consensus 156 ~~~ 158 (228)
..+
T Consensus 166 ~~p 168 (313)
T TIGR00991 166 SPP 168 (313)
T ss_pred CCC
Confidence 743
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-06 Score=69.08 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=84.4
Q ss_pred CCChhhhHHhhhhCCCCCCCC--cee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI--PTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~--~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|+||||++|.+++........ ... .........++|. .+.|+||||-.+.... ...+.
T Consensus 10 GsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~--------~~~~~--------- 70 (212)
T PF04548_consen 10 GSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGS--------DEEII--------- 70 (212)
T ss_dssp TSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEE--------HHHHH---------
T ss_pred CCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCccc--------HHHHH---------
Confidence 899999999999776432211 111 1112233466774 5678999995432210 01111
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC---CCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS---TPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~---~piilv~nK~D 154 (228)
.+..+......| ..+++++|...+ +-+-.+. ..+..+....+. .-++||.|..|
T Consensus 71 --------------~~i~~~l~~~~~------g~ha~llVi~~~-r~t~~~~--~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 71 --------------REIKRCLSLCSP------GPHAFLLVIPLG-RFTEEDR--EVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp --------------HHHHHHHHHTTT-------ESEEEEEEETT-B-SHHHH--HHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred --------------HHHHHHHHhccC------CCeEEEEEEecC-cchHHHH--HHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 111111110111 129999999987 3332222 444455544331 34777788888
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc------CCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL------TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~------~~~~v~~lf~~l~~~i~~ 214 (228)
...... .+.+... -.......+.+..+ .+|..++.+ ....+.+||..+-.-+..
T Consensus 128 ~~~~~~-~~~~l~~----~~~~~l~~li~~c~-~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 128 ELEDDS-LEDYLKK----ESNEALQELIEKCG-GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp GGTTTT-HHHHHHH----HHHHHHHHHHHHTT-TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-HHHHHhc----cCchhHhHHhhhcC-CEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 665533 2211111 11234567777788 478777666 334677787777665543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.5e-06 Score=72.70 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
|||||||+|++++.... ..+.++...........++ ..+.+|||||-...
T Consensus 41 GvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~ 92 (249)
T cd01853 41 GVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLES 92 (249)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcc
Confidence 89999999999987542 2222332221222333455 56789999997643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-06 Score=64.14 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=54.3
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|.+++|.|+.++.+-..- .+...+.....+.|+++|.||+|+..... . ......+.+.+. ...
T Consensus 9 aD~il~VvD~~~p~~~~~~--~i~~~l~~~~~~~p~ilVlNKiDl~~~~~------------~-~~~~~~~~~~~~-~~~ 72 (157)
T cd01858 9 SDVVIQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIFVLNKCDLVPTWV------------T-ARWVKILSKEYP-TIA 72 (157)
T ss_pred CCEEEEEEECCCCccccCH--HHHHHHHhccCCCCEEEEEEchhcCCHHH------------H-HHHHHHHhcCCc-EEE
Confidence 3999999999987432111 33334443334589999999999975421 0 111222222222 225
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~ 211 (228)
+.+||+.+.|++++++.+...
T Consensus 73 ~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 73 FHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred EEeeccccccHHHHHHHHHHH
Confidence 789999999999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=74.02 Aligned_cols=84 Identities=23% Similarity=0.169 Sum_probs=55.6
Q ss_pred ceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 112 DVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
|..++|.|.++ +.+.+++. .+... ...-.++|.||+|+.++.. .++.. .+...... +.+.
T Consensus 75 d~alLvV~~deGl~~qtgEhL~-----iLdll-gi~~giivltk~D~~d~~r-~e~~i---------~~Il~~l~-l~~~ 137 (447)
T COG3276 75 DYALLVVAADEGLMAQTGEHLL-----ILDLL-GIKNGIIVLTKADRVDEAR-IEQKI---------KQILADLS-LANA 137 (447)
T ss_pred ceEEEEEeCccCcchhhHHHHH-----HHHhc-CCCceEEEEeccccccHHH-HHHHH---------HHHHhhcc-cccc
Confidence 99999999964 55555542 22222 2344689999999997532 11111 11111111 4557
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++.+|+.+|.||+++-+.+....
T Consensus 138 ~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 138 KIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccccccCCCHHHHHHHHHHhh
Confidence 899999999999999999999877
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.1e-06 Score=71.36 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|.+++|.+...+..+.... ..+.. ..-++|.||+|+.......+ ...+...... .
T Consensus 171 D~vlvv~~p~~gd~iq~~k----~gi~E----~aDIiVVNKaDl~~~~~a~~----------~~~el~~~L~l~~~~~~~ 232 (332)
T PRK09435 171 DFFLLLQLPGAGDELQGIK----KGIME----LADLIVINKADGDNKTAARR----------AAAEYRSALRLLRPKDPG 232 (332)
T ss_pred CEEEEEecCCchHHHHHHH----hhhhh----hhheEEeehhcccchhHHHH----------HHHHHHHHHhcccccccC
Confidence 9999996644444443332 11111 22378899999886432110 0111111111 1
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|. .+++.+||+++.|++++++.+.+.....
T Consensus 233 w~-~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 233 WQ-PPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred CC-CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 22 5899999999999999999999876543
|
|
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=68.43 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred CCChhhhHHhhhhCCCCCCC---C-------cee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEY---I-------PTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|+|||||+|.|.+..+.... . ++. .......+.-++..+.+.++||||......... .+...-.++.
T Consensus 14 G~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~-~~~~I~~yI~- 91 (281)
T PF00735_consen 14 GLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSD-CWEPIVDYIE- 91 (281)
T ss_dssp TSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCH-HHHHHHHHHH-
T ss_pred CCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchh-hhHHHHHHHH-
Confidence 89999999999987653321 1 111 111122334477889999999999765322110 0110000111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
+-|......-..+.-+...-.++|++|++.+.+.. ++..+. +..+++....+++|-|
T Consensus 92 -------------------~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D---i~~mk~Ls~~vNvIPv 148 (281)
T PF00735_consen 92 -------------------SQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD---IEFMKRLSKRVNVIPV 148 (281)
T ss_dssp -------------------HHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH---HHHHHHHTTTSEEEEE
T ss_pred -------------------HHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH---HHHHHHhcccccEEeE
Confidence 11111111111111111123345999999998742 333332 2244444445889999
Q ss_pred EeCCCCCCchH
Q psy8274 150 GTKLDLRDDKE 160 (228)
Q Consensus 150 ~nK~Dl~~~~~ 160 (228)
..|+|.....+
T Consensus 149 IaKaD~lt~~e 159 (281)
T PF00735_consen 149 IAKADTLTPEE 159 (281)
T ss_dssp ESTGGGS-HHH
T ss_pred EecccccCHHH
Confidence 99999887543
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.8e-06 Score=76.23 Aligned_cols=118 Identities=22% Similarity=0.353 Sum_probs=74.6
Q ss_pred eeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEe
Q psy8274 40 NLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119 (228)
Q Consensus 40 ~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D 119 (228)
.+.++||||++.|..++.....- ||.+|+|.|
T Consensus 541 g~lvIdtpghEsFtnlRsrgssl------------------------------------------------C~~aIlvvd 572 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSL------------------------------------------------CDLAILVVD 572 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccc------------------------------------------------cceEEEEee
Confidence 36789999999998777644333 499999999
Q ss_pred cCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc------hHHHHHHhhccCccccHHHH-------HHHHH
Q psy8274 120 LVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD------KETIEKLKEKKLAPITYPQG-------LSMAK 183 (228)
Q Consensus 120 vt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~------~~~~~~~~~~~~~~v~~~~~-------~~~~~ 183 (228)
+.. +.+++++. .|+.+ +.|.||+.||+|..-. ..+.+.++.+....+. +-- ..|+.
T Consensus 573 ImhGlepqtiESi~-----lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~-EF~~R~~~ii~efaE 644 (1064)
T KOG1144|consen 573 IMHGLEPQTIESIN-----LLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN-EFKERLNNIIVEFAE 644 (1064)
T ss_pred hhccCCcchhHHHH-----HHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH-HHHHHHHHHHHHHHH
Confidence 874 55565542 55555 7999999999996531 1222222222111111 100 01111
Q ss_pred H-------h------CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 184 E-------I------GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 184 ~-------~------~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. + ..+.++++||-+|+||-+|+-++++...
T Consensus 645 QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 645 QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 0 1 1245789999999999999999887553
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-05 Score=67.84 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=56.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI------ 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 185 (228)
|..++|.|+.....-+.++ .+ .+-+. .....++|.||+|...+...... + ...+.++.+.+
T Consensus 95 Dlm~lviDv~kG~QtQtAE-cL--iig~~-~c~klvvvinkid~lpE~qr~sk--------i-~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 95 DLMILVIDVQKGKQTQTAE-CL--IIGEL-LCKKLVVVINKIDVLPENQRASK--------I-EKSAKKVRKTLESTGFD 161 (522)
T ss_pred eeeeEEEehhcccccccch-hh--hhhhh-hccceEEEEeccccccchhhhhH--------H-HHHHHHHHHHHHhcCcC
Confidence 9999999998654433332 11 11111 12446778899887754321110 1 11122333322
Q ss_pred CCceEEEecccCC----CCHHHHHHHHHHHhcCCCCC
Q psy8274 186 GAVKYLECSALTQ----KGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 186 ~~~~~~evSa~~~----~~v~~lf~~l~~~i~~~~~~ 218 (228)
|-.|+.++||+.| +++.++.+.+-.++..++.+
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 3378999999999 78888888888888877654
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-05 Score=66.82 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|++++... .+.|..|..+.....+.+.+. ...+++.|+||-.
T Consensus 12 NvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 12 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred CCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 7999999999997663 233443332322233333221 1358889999854
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-06 Score=82.73 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=29.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|.|+++.-.-... .++..+... +.|++++.||+|+.
T Consensus 117 D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 117 DGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred CeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 999999999875433322 333444443 58999999999987
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-05 Score=62.92 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=39.7
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+|++-|-||+|. ++.++..++++. ..-+.+|+..+-|++.+++.+.+.+.
T Consensus 239 ~~ClYvYnKID~-----------------vs~eevdrlAr~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----------------VSIEEVDRLARQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeeccce-----------------ecHHHHHHHhcC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 477777888873 556778888886 34667899999999999999999764
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=68.60 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=49.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH---HhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK---EIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~ 188 (228)
|.++++-+ +.+-+++. .+...+ ...|.++|.||+|+....+....... . ......+.. .+. .
T Consensus 149 D~i~vv~~---~~~~~el~-~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~~-----~-~~~l~~l~~~~~~~~-~ 213 (300)
T TIGR00750 149 DTFVVVTI---PGTGDDLQ-GIKAGL----MEIADIYVVNKADGEGATNVTIARLM-----L-ALALEEIRRREDGWR-P 213 (300)
T ss_pred ceEEEEec---CCccHHHH-HHHHHH----hhhccEEEEEcccccchhHHHHHHHH-----H-HHHHhhccccccCCC-C
Confidence 77777743 33434443 222222 25778999999999865321000000 0 000011111 122 3
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+++++||+++.|++++++++.....
T Consensus 214 ~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 214 PVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999988643
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.5e-06 Score=81.89 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=29.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++|+|.|++..-..... ..+..+... +.|++++.||+|+.
T Consensus 123 D~ailVvda~~Gv~~~t~--~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 123 DGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CEEEEEEECCCCCcccHH--HHHHHHHHC--CCCEEEEEECCccc
Confidence 999999999875443322 333333333 68999999999987
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.2e-05 Score=64.31 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCChhhhHHhhhhCCCCCC----------CCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGE----------YIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~----------~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|.|||||+|.+++..+... ..+++.. .+...+.=+|..+.+.++||||..++-.... ++.-.
T Consensus 33 G~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~-~we~I------ 105 (373)
T COG5019 33 GLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK-CWEPI------ 105 (373)
T ss_pred CCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc-cHHHH------
Confidence 7899999999998755433 2233322 2223334478889999999999877543311 11111
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC-----CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP-----KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
-+...++....+.-..... .-.+++++++..-.+ +.++..+.=..+..|. ..+
T Consensus 106 ------------------~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls---~~v 163 (373)
T COG5019 106 ------------------VDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLS---KRV 163 (373)
T ss_pred ------------------HHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHh---ccc
Confidence 1111222222222222221 224569999988876 3344444313333343 447
Q ss_pred CEEEEEeCCCCCCchH
Q psy8274 145 PIILVGTKLDLRDDKE 160 (228)
Q Consensus 145 piilv~nK~Dl~~~~~ 160 (228)
.+|-|+-|+|.....+
T Consensus 164 NlIPVI~KaD~lT~~E 179 (373)
T COG5019 164 NLIPVIAKADTLTDDE 179 (373)
T ss_pred CeeeeeeccccCCHHH
Confidence 7777789999887543
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=69.65 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=57.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
..+++|.|+.|..+ .|...+.+...+.|+++|+||+||.... ...++. ..+++.+|+
T Consensus 71 ~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~-------------~~~~~i~~~l~~~~k~~g~ 131 (365)
T PRK13796 71 ALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKS-------------VKKNKVKNWLRQEAKELGL 131 (365)
T ss_pred cEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCc-------------cCHHHHHHHHHHHHHhcCC
Confidence 48999999987431 4555666655578999999999997531 222222 234555664
Q ss_pred c--eEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 V--KYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~--~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. .++.+||+++.|++++++.+.+.
T Consensus 132 ~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 132 RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 2 58999999999999999999764
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.7e-05 Score=69.67 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=48.5
Q ss_pred ceEEEEEecCChhh---H--HHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHh
Q psy8274 112 DVFQICFSLVNPAS---F--ENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEI 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s---~--~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~ 185 (228)
|+.+||.|+.+.+. | ....++.+ .|.+...-.-+|++.||+|+.+-++ ..++ -..+...+.+..
T Consensus 110 D~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wde~rf~e---------i~~~v~~l~k~~ 179 (428)
T COG5256 110 DVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWDEERFEE---------IVSEVSKLLKMV 179 (428)
T ss_pred cEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccCHHHHHH---------HHHHHHHHHHHc
Confidence 99999999987631 1 11110100 1222223345788889999986211 1111 112344466666
Q ss_pred CC----ceEEEecccCCCCHHHH
Q psy8274 186 GA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 186 ~~----~~~~evSa~~~~~v~~l 204 (228)
|+ ++|+++|+..|+|+.+.
T Consensus 180 G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 180 GYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CCCccCCeEEecccccCCccccc
Confidence 54 45999999999998653
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-05 Score=60.65 Aligned_cols=80 Identities=26% Similarity=0.207 Sum_probs=53.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|+|+.++.+-... .+... ..+.|+++|.||+|+..... + .+...+.+..+ ..++
T Consensus 21 D~il~v~D~~~~~~~~~~--~i~~~----~~~k~~ilVlNK~Dl~~~~~------------~--~~~~~~~~~~~-~~vi 79 (171)
T cd01856 21 DLVIEVRDARIPLSSRNP--LLEKI----LGNKPRIIVLNKADLADPKK------------T--KKWLKYFESKG-EKVL 79 (171)
T ss_pred CEEEEEeeccCccCcCCh--hhHhH----hcCCCEEEEEehhhcCChHH------------H--HHHHHHHHhcC-CeEE
Confidence 999999999876543221 12222 22578999999999964311 0 11112222233 4689
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q psy8274 192 ECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i 212 (228)
.+||+++.|++++...+...+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999988865
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=65.24 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.6
Q ss_pred ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.|.|+=||++|.||+.+++.++.-...+..
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~ 280 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWAPSPRA 280 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhCCCCCc
Confidence 679999999999999999999998776654
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=9e-06 Score=77.98 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=27.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|++++|.|+...-.-.... .| ...... +.|.+++.||+|+..
T Consensus 112 D~avlVvda~~g~~~~t~~-~~-~~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 112 DGAIVVVDAVEGVMPQTET-VL-RQALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred CEEEEEEECCCCCCccHHH-HH-HHHHHc--CCCeEEEEECchhhc
Confidence 9999999988653332221 22 222222 467899999999763
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.2e-05 Score=67.33 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=43.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------- 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------- 184 (228)
|.+|++.+ .+-+-.++ .+...+.+. ++|+.+|-+|+|..-. ...+.+.+..+.++...-+++
T Consensus 116 D~fiii~s--~rf~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~-----~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 116 DFFIIISS--ERFTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLY-----NERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp SEEEEEES--SS--HHHH--HHHHHHHHT--T-EEEEEE--HHHHHH-----HHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCCchhhH--HHHHHHHHc--CCcEEEEEecccccHh-----hhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 98888865 33333333 455666666 7899999999995211 111111233443333322222
Q ss_pred -hC--CceEEEecccCCC--CHHHHHHHHHHHhc
Q psy8274 185 -IG--AVKYLECSALTQK--GLKTVFDEAIRAVL 213 (228)
Q Consensus 185 -~~--~~~~~evSa~~~~--~v~~lf~~l~~~i~ 213 (228)
.| ..++|-+|+.+-. +.-.+.+.+...+.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 12 2568899988543 45556666655443
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.3e-05 Score=65.11 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 144 TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+-++|.||+|+..... ...++.....+.. ...+++++||++|+|++++++|+..+
T Consensus 231 ~ADIVVLNKiDLl~~~~------------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN------------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH------------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56688899999975211 1223333333332 34689999999999999999999774
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.9e-05 Score=67.99 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=66.3
Q ss_pred EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCc
Q psy8274 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCD 112 (228)
Q Consensus 33 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 112 (228)
.++.....+.+.|.||+.+|.+..-.-...+ |
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqa------------------------------------------------D 280 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQA------------------------------------------------D 280 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhcccccc------------------------------------------------c
Confidence 4456677889999999887764332222233 9
Q ss_pred eEEEEEecCChhhHHHHHH------hhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHH-HH
Q psy8274 113 VFQICFSLVNPASFENVRA------KWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMA-KE 184 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~------~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~ 184 (228)
+.++|.|.+-. .|+.=.+ +....++ ...-.-+||+.||.|+++=.. ..+ .-......|. +.
T Consensus 281 ~avLvvd~s~~-~FE~gfd~~gQtrEha~llr-~Lgi~qlivaiNKmD~V~Wsq~RF~---------eIk~~l~~fL~~~ 349 (603)
T KOG0458|consen 281 VAVLVVDASTG-EFESGFDPGGQTREHALLLR-SLGISQLIVAINKMDLVSWSQDRFE---------EIKNKLSSFLKES 349 (603)
T ss_pred eEEEEEECCcc-hhhhccCCCCchHHHHHHHH-HcCcceEEEEeecccccCccHHHHH---------HHHHHHHHHHHHh
Confidence 99999998632 2222110 1111222 222346788999999986321 111 1112344454 44
Q ss_pred hCC----ceEEEecccCCCCHHHH
Q psy8274 185 IGA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 185 ~~~----~~~~evSa~~~~~v~~l 204 (228)
.|+ +.|++||...|+|+...
T Consensus 350 ~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 350 CGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCcccCCcceEecccccCCccccc
Confidence 443 36999999999998765
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=64.59 Aligned_cols=82 Identities=27% Similarity=0.209 Sum_probs=55.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+-... .+...+ .+.|+++|.||+|+..... ......+.+..+ .+++
T Consensus 23 DvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~--------------~~~~~~~~~~~~-~~vi 81 (276)
T TIGR03596 23 DVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAV--------------TKQWLKYFEEKG-IKAL 81 (276)
T ss_pred CEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHH--------------HHHHHHHHHHcC-CeEE
Confidence 999999999877554332 122222 2589999999999975311 011111222344 4789
Q ss_pred EecccCCCCHHHHHHHHHHHhcC
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+||+++.|++++.+.+.+.+..
T Consensus 82 ~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 82 AINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEECCCcccHHHHHHHHHHHHHH
Confidence 99999999999999888876643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.1e-05 Score=48.11 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred ceEEEEEecCChhhH--HHHHHhhHHHHhhhCCCCCEEEEEeCCC
Q psy8274 112 DVFQICFSLVNPASF--ENVRAKWYPEVRHHCPSTPIILVGTKLD 154 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~--~~~~~~~~~~l~~~~~~~piilv~nK~D 154 (228)
++|+|++|++..++| +... .++.+++....+.|+++|.||+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred ceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 999999999976665 5555 77888888888999999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00046 Score=60.32 Aligned_cols=131 Identities=18% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCChhhhHHhhhhCCCCCCCC---------ceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI---------PTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~---------~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~ 70 (228)
|.|||||+|++....+.++.. .|.. ..+...+.=+|..+.+.+.||||..+...... ++.-..
T Consensus 31 GlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~-~w~pi~------ 103 (366)
T KOG2655|consen 31 GLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN-CWRPIV------ 103 (366)
T ss_pred CccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc-cchhhh------
Confidence 789999999988776654311 1111 11122333368889999999999876543311 121110
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCC---CCC-CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP---TVP-KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI 146 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi 146 (228)
+....+-...++-.. .+. .-.+++++++....+. .++..+. +....+....+.+
T Consensus 104 ------------------~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~D---i~~Mk~l~~~vNi 161 (366)
T KOG2655|consen 104 ------------------NYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLD---IEFMKKLSKKVNL 161 (366)
T ss_pred ------------------HHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhh---HHHHHHHhccccc
Confidence 011111112222111 122 2235688888887653 3444443 2233333445778
Q ss_pred EEEEeCCCCCCchH
Q psy8274 147 ILVGTKLDLRDDKE 160 (228)
Q Consensus 147 ilv~nK~Dl~~~~~ 160 (228)
|-|.-|+|.....+
T Consensus 162 IPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 162 IPVIAKADTLTKDE 175 (366)
T ss_pred cceeeccccCCHHH
Confidence 88889999887644
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.2e-05 Score=64.87 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCC----CEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PST----PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~----piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
|.++.|.|++.|..-...+ ..+.-+...- +.. .++=|-||+|..... +..+ +
T Consensus 259 dlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~E-------~-- 315 (410)
T KOG0410|consen 259 DLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEEE-------K-- 315 (410)
T ss_pred ceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Cccc-------c--
Confidence 9999999999987765554 4444444441 112 245567888877542 1111 1
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.....+||++|+|++++.+.+-.++..
T Consensus 316 -n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 316 -NLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred -CCccccccccCccHHHHHHHHHHHhhh
Confidence 125668999999999999988777653
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.9e-05 Score=65.02 Aligned_cols=83 Identities=23% Similarity=0.243 Sum_probs=56.6
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++|.++..+-...-+. .++..+... ++|.+||.||+||.+... ........+ ..+ .
T Consensus 111 ANvD~vliV~s~~p~~~~~~ld-r~L~~a~~~--~i~piIVLNK~DL~~~~~------------~~~~~~~~~--~~g-~ 172 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIE-RYLALAWES--GAEPVIVLTKADLCEDAE------------EKIAEVEAL--APG-V 172 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHH-HHHHHHHHc--CCCEEEEEEChhcCCCHH------------HHHHHHHHh--CCC-C
Confidence 5679999999997554444443 666555555 677888999999976311 000112222 235 5
Q ss_pred eEEEecccCCCCHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~ 209 (228)
+++.+|++++.|++++..++-
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 889999999999999888874
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.6e-05 Score=59.26 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=25.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKL 153 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~ 153 (228)
|++|+|.+.+...+-.... .+....... ...+++|.||.
T Consensus 130 d~vi~V~~~~~~~~~~~~~-~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 130 DVVIFVVDANQDLTESDME-FLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEETTSTGGGHHHH-HHHHHHTTT--CSSEEEEEE-G
T ss_pred CEEEEEeccCcccchHHHH-HHHHHhcCC--CCeEEEEEcCC
Confidence 9999999999866544443 444444444 34488888984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=62.34 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=54.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|++++|.|+.++.+.... .+...+ .+.|+++|.||+|+.+... ......+.+..+ .+++
T Consensus 26 DvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~~--------------~~~~~~~~~~~~-~~vi 84 (287)
T PRK09563 26 DVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPEV--------------TKKWIEYFEEQG-IKAL 84 (287)
T ss_pred CEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHHH--------------HHHHHHHHHHcC-CeEE
Confidence 999999999876554321 122222 2689999999999965311 011122223335 4789
Q ss_pred EecccCCCCHHHHHHHHHHHhc
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+||+++.|++++.+.+...+.
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999988877654
|
|
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.1e-05 Score=71.63 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=64.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-------ecc--ce---------eE---EEcCeEEeeeeeeCCCCcccccCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-------DNY--SA---------NV---MVDGKPINLGLWDTAGQEDYDRLRPLS 59 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-------~~~--~~---------~~---~~~~~~~~~~i~D~~g~~~~~~~~~~~ 59 (228)
+.|||+|+.-++....++-+.++-. ..+ .. ++ ...++.+.+.+.|||||-+|..-....
T Consensus 138 hhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE~ta~ 217 (971)
T KOG0468|consen 138 HHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDETTAS 217 (971)
T ss_pred ccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHHHHHH
Confidence 4799999999987665332111111 000 01 11 115778899999999998775332222
Q ss_pred cccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh
Q psy8274 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH 139 (228)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~ 139 (228)
++-+ |++++|+|+...-.+..- . .|++
T Consensus 218 l~~s------------------------------------------------DgvVlvvDv~EGVmlntE--r---~ikh 244 (971)
T KOG0468|consen 218 LRLS------------------------------------------------DGVVLVVDVAEGVMLNTE--R---IIKH 244 (971)
T ss_pred hhhc------------------------------------------------ceEEEEEEcccCceeeHH--H---HHHH
Confidence 2222 999999999887776543 2 2333
Q ss_pred hC-CCCCEEEEEeCCCCC
Q psy8274 140 HC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 140 ~~-~~~piilv~nK~Dl~ 156 (228)
.- ...|+++|.||.|+.
T Consensus 245 aiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 245 AIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHhccCcEEEEEehhHHH
Confidence 22 368999999999965
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=63.57 Aligned_cols=150 Identities=19% Similarity=0.248 Sum_probs=94.7
Q ss_pred CCCCCceeeecccee--------EEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccch
Q psy8274 17 PGEYIPTVFDNYSAN--------VMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLK 88 (228)
Q Consensus 17 ~~~~~~t~~~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 88 (228)
.++|.||..|-...+ +.+.-+...+.++|++||..-+.-|.++|.+.
T Consensus 165 ~~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v------------------------- 219 (354)
T KOG0082|consen 165 SPDYVPTEQDILRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDV------------------------- 219 (354)
T ss_pred CCCCCCCHHHHHhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCC-------------------------
Confidence 456778775543221 12222336889999999988888888899988
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh----------HHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 89 TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS----------FENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s----------~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
++||||.++++-+. ..... ++.+.+-+.. .+.++||..||.||-
T Consensus 220 -----------------------~aviF~vslSeYdq~l~ED~~~NRM~eS~-~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 220 -----------------------TAVIFCVSLSEYDQVLEEDETTNRMHESL-KLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred -----------------------CEEEEEEehhhhhhhcccccchhHHHHHH-HHHHHHhcCcccccCcEEEEeecHHHH
Confidence 99999999874211 11111 3344444332 478999999999987
Q ss_pred Cch----HHHHHHhhccCccccHHHHHHHHHHh---------CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 157 DDK----ETIEKLKEKKLAPITYPQGLSMAKEI---------GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 157 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+. +...-+...... -+.+++..+.+.. .-+-+..++|.+-.+|+.+|..+.+.|++..
T Consensus 276 eEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 276 EEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 642 111111122122 4555666665542 1123556688888899999999999887643
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=61.85 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 50 (228)
|||||||+|++++.... +.|..|.-+.....+.+.+. ...++++|+||-.
T Consensus 8 N~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 8 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 79999999999987652 33443332333333333332 2358899999954
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00082 Score=57.04 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=56.2
Q ss_pred ceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 112 DVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
|+.|+|...+| |.+-+++. ..++. .+| ++++.||+|+.+..+-.+. -..+...+..++++
T Consensus 100 DgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~ellel---------VemEvreLLs~y~f 163 (394)
T COG0050 100 DGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEELLEL---------VEMEVRELLSEYGF 163 (394)
T ss_pred CccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHHHHH---------HHHHHHHHHHHcCC
Confidence 99999999987 44444432 22223 565 5677899999986554332 22346677777764
Q ss_pred ----ceEEEecccCCC--------CHHHHHHHHHHHhcCCCCC
Q psy8274 188 ----VKYLECSALTQK--------GLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 188 ----~~~~evSa~~~~--------~v~~lf~~l~~~i~~~~~~ 218 (228)
.|+..-||+..- .|.+|++.+-..+..+.++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 345555555322 3567777777776665554
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00023 Score=67.59 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=29.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|+|+...-..+.- .+......+ ++|.+++.||+|....
T Consensus 101 DgavvVvdaveGV~~QTE--tv~rqa~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 101 DGAVVVVDAVEGVEPQTE--TVWRQADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred cceEEEEECCCCeeecHH--HHHHHHhhc--CCCeEEEEECcccccc
Confidence 999999998764333222 333333444 7999999999997653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00019 Score=54.61 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=29.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++....... .....+ ..+...+.+++ .+.+|||||-.
T Consensus 93 ~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 93 NVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred CCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 799999999999876532 111111 22233445554 57899999953
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=52.21 Aligned_cols=45 Identities=24% Similarity=0.099 Sum_probs=29.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+.+++|.|.+..-+-.... .+...+... ..|+++|.||.|..+..
T Consensus 164 ~IIL~Vvda~~d~~~~d~l-~ia~~ld~~--~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 164 CLILAVTPANVDLANSDAL-KLAKEVDPQ--GERTIGVITKLDLMDEG 208 (240)
T ss_pred CeEEEEEECCCCCCchhHH-HHHHHHHHc--CCcEEEEEECCCCCCcc
Confidence 6899999886432222222 333344333 68999999999998753
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0013 Score=54.26 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=33.3
Q ss_pred CCChhhhHHhhhhCCCCCCCC-ceeeeccc---------eeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI-PTVFDNYS---------ANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~-~t~~~~~~---------~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
|.|||||+|.+......+... +..+..+. ..+.=++...++.++||||..+.
T Consensus 56 glgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 56 GLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred CCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 689999999998665443211 11121222 22333788899999999998764
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0026 Score=59.83 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCChhhhHHhhhhCC-CCCC-CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA-FPGE-YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
||||||++|++++.. |... ..+.+..........++ ..+.++||||-.....- . .. ...+.
T Consensus 128 GVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~d-q-~~---neeIL---------- 190 (763)
T TIGR00993 128 GVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASD-Q-SK---NEKIL---------- 190 (763)
T ss_pred CCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccc-h-HH---HHHHH----------
Confidence 899999999999865 3222 11222111122233455 46788999997653210 0 00 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH-HHHHHhhHHHHhhhCCC---CCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF-ENVRAKWYPEVRHHCPS---TPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~-~~~~~~~~~~l~~~~~~---~piilv~nK~D 154 (228)
..+...+.. ..+|+||+|..++..... .+. .++..|...+.. .-+|||-|+.|
T Consensus 191 --------------k~Ik~~Lsk-------~gpDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 191 --------------SSVKKFIKK-------NPPDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred --------------HHHHHHHhc-------CCCCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 000111110 012999999887633322 222 566677766542 35788889999
Q ss_pred CCCc
Q psy8274 155 LRDD 158 (228)
Q Consensus 155 l~~~ 158 (228)
...+
T Consensus 248 ~lpp 251 (763)
T TIGR00993 248 SAPP 251 (763)
T ss_pred cCCC
Confidence 8753
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0087 Score=53.44 Aligned_cols=83 Identities=7% Similarity=0.117 Sum_probs=58.1
Q ss_pred ceEEEEEecC----ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 112 DVFQICFSLV----NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt----~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
-|+++-=|.+ .++.|..+++....+|... ++|.+++.|-.+=... .+.+-+..+..+++
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~--------------et~~L~~eL~ekY~- 209 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYSE--------------ETQELAEELEEKYD- 209 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCH--------------HHHHHHHHHHHHhC-
Confidence 4555555544 4788999988889999888 8999999988764443 34455677778889
Q ss_pred ceEEEecccC--CCCHHHHHHHHHHH
Q psy8274 188 VKYLECSALT--QKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~~~~evSa~~--~~~v~~lf~~l~~~ 211 (228)
.+.+.+++.. ...|..++..++-.
T Consensus 210 vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 210 VPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred CcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 5888888763 34555555555443
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00088 Score=59.67 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCCCceeeecccee--------EEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccc
Q psy8274 17 PGEYIPTVFDNYSAN--------VMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGL 87 (228)
Q Consensus 17 ~~~~~~t~~~~~~~~--------~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (228)
.+.|.||..|....+ +.+.- ....+.++|++|+..-+.-|..++.+.
T Consensus 205 ~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v------------------------ 260 (389)
T PF00503_consen 205 QPDYIPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDV------------------------ 260 (389)
T ss_dssp STTB---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTE------------------------
T ss_pred CCCccCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccc------------------------
Confidence 346788876644321 11111 335679999999998888999999888
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC--------h--hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCC
Q psy8274 88 KTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN--------P--ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDL 155 (228)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~--------~--~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl 155 (228)
++||||.++++ + -.+.+.. .+...+-+. ..+.|++|+.||.|+
T Consensus 261 ------------------------~~vif~vsls~ydq~~~ed~~~nrl~esl-~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 261 ------------------------TAVIFVVSLSEYDQTLYEDPNTNRLHESL-NLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp ------------------------SEEEEEEEGGGGGSBESSSTTSBHHHHHH-HHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred ------------------------cEEEEeecccchhhhhcccchHHHHHHHH-HHHHHHHhCcccccCceEEeeecHHH
Confidence 99999999763 1 1133333 334444432 247899999999997
Q ss_pred CCchH-----HHHHHhhccCc-cccHHHHHHHHHHh-----------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 156 RDDKE-----TIEKLKEKKLA-PITYPQGLSMAKEI-----------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 156 ~~~~~-----~~~~~~~~~~~-~v~~~~~~~~~~~~-----------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
....= ...-+...... .-+.+.+..|.+.. ..+.+..++|.+-.+++.+|..+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 65310 00001111011 13456666666652 112456788888899999999887654
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=57.23 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=30.8
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
||.||++||...-+--++.. ..+..++.+-+ .+-||.||.|.++..
T Consensus 182 ~D~IiLlfD~hKLDIsdEf~-~vi~aLkG~Ed--kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 182 VDRIILLFDAHKLDISDEFK-RVIDALKGHED--KIRVVLNKADQVDTQ 227 (532)
T ss_pred ccEEEEEechhhccccHHHH-HHHHHhhCCcc--eeEEEeccccccCHH
Confidence 59999999986543333333 44556665533 356678999988763
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=57.21 Aligned_cols=80 Identities=25% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEE------------c----CeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMV------------D----GKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||||.|.++...-. +.|.-++-+.-...+.+ . -....++++|++|-- ++
T Consensus 12 NVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV----------~G- 80 (372)
T COG0012 12 NVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLV----------KG- 80 (372)
T ss_pred CCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccC----------CC-
Confidence 79999999999977643 44544332111111111 1 124577888988732 23
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
|..|.+++.-|.+..|.. |+++.|.|+.
T Consensus 81 -----------------As~GeGLGNkFL~~IRev-------------daI~hVVr~f 108 (372)
T COG0012 81 -----------------ASKGEGLGNKFLDNIREV-------------DAIIHVVRCF 108 (372)
T ss_pred -----------------cccCCCcchHHHHhhhhc-------------CeEEEEEEec
Confidence 378999999999999987 9999999986
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0041 Score=53.17 Aligned_cols=87 Identities=25% Similarity=0.268 Sum_probs=57.4
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
+.|-.++|+.+.+|+-=..+.+.++-..... ++..+|+.||+||.+..+. .. .+.....+.+| .+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~----------~~--~~~~~~y~~~g-y~ 143 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA----------AV--KELLREYEDIG-YP 143 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH----------HH--HHHHHHHHhCC-ee
Confidence 3466666666666554333333555444443 5656666899999986431 11 34566777788 58
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+.+|++++.+++++...+...
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EEEecCcCcccHHHHHHHhcCC
Confidence 9999999999999998876543
|
|
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0048 Score=54.12 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=56.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH---HHHHHhh--------c-cCccccHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE---TIEKLKE--------K-KLAPITYPQGL 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~--------~-~~~~v~~~~~~ 179 (228)
|..++|...+...+..- ++.+-.+... ++|.+++.+|+|+.++.. ..+++.. + ..+.-+..++.
T Consensus 276 h~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv 351 (591)
T KOG1143|consen 276 HFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAV 351 (591)
T ss_pred ceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHH
Confidence 66677777665433321 1233344433 799999999999998732 2222111 1 13445566677
Q ss_pred HHHHHh---CCceEEEecccCCCCHHHHH
Q psy8274 180 SMAKEI---GAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 180 ~~~~~~---~~~~~~evSa~~~~~v~~lf 205 (228)
..+++. ++.|+|.+|+.+|++++-+-
T Consensus 352 ~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 352 KAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHhccCCceeEEEEeecCccchhHHH
Confidence 666664 56889999999999987553
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0009 Score=63.00 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEE
Q psy8274 37 KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116 (228)
Q Consensus 37 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 116 (228)
..+.+.++|+|||-+|.+...+..+-+ |++++
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~------------------------------------------------d~alv 101 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLS------------------------------------------------DGALV 101 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhc------------------------------------------------CCcEE
Confidence 457788999999999876554433333 99999
Q ss_pred EEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 117 CFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 117 v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
+.|+.. ..++.-+++.|. ++..++||.||+|.
T Consensus 102 lvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 102 LVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKIDR 136 (887)
T ss_pred EEeeccccchhHHHHHHHHHH-------ccCceEEEEehhhh
Confidence 999864 344444443343 35677889999994
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=55.20 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=52.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH------Hh
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK------EI 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~ 185 (228)
|.+++|.=..-.+.++-+..-++ . +-=++|.||.|+......... ...+..+.. .|
T Consensus 166 Dt~~~v~~pg~GD~~Q~iK~Gim----E----iaDi~vINKaD~~~A~~a~r~----------l~~al~~~~~~~~~~~W 227 (323)
T COG1703 166 DTFLVVMIPGAGDDLQGIKAGIM----E----IADIIVINKADRKGAEKAARE----------LRSALDLLREVWRENGW 227 (323)
T ss_pred ceEEEEecCCCCcHHHHHHhhhh----h----hhheeeEeccChhhHHHHHHH----------HHHHHHhhcccccccCC
Confidence 88888876655555555431111 1 222677899996654221111 111112221 12
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. .+.+.+||..|.|++++++.+.+.......
T Consensus 228 ~-ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 228 R-PPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred C-CceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 3 689999999999999999999886654333
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00078 Score=56.66 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=44.7
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcc-----ccHHHHHHHHHHhCC
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP-----ITYPQGLSMAKEIGA 187 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~ 187 (228)
-++++.|++.+-.-.+. ..+..+.+. ++|..+|.||||...... ....+. .......+.+..-.
T Consensus 222 ~~FLLvd~sv~i~~~D~--~~i~~~ge~--~VP~t~vfTK~DK~k~~~------~~~kKp~~~i~~~f~~l~~~~f~~~- 290 (320)
T KOG2486|consen 222 RVFLLVDASVPIQPTDN--PEIAWLGEN--NVPMTSVFTKCDKQKKVK------RTGKKPGLNIKINFQGLIRGVFLVD- 290 (320)
T ss_pred eeeeeeeccCCCCCCCh--HHHHHHhhc--CCCeEEeeehhhhhhhcc------ccccCccccceeehhhccccceecc-
Confidence 34455566543221111 123344444 799999999999764310 000000 11111111111112
Q ss_pred ceEEEecccCCCCHHHHHHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
.++..+|+.++.|+++++-.+..
T Consensus 291 ~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 291 LPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred CCceeeecccccCceeeeeehhh
Confidence 46778999999999988765544
|
|
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0032 Score=54.43 Aligned_cols=80 Identities=26% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEc---------------CeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVD---------------GKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|||||||.|.+++.... +.|.-++-+.-..++.+. -....+.++|++|-- ++
T Consensus 30 NvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv----------kG-- 97 (391)
T KOG1491|consen 30 NVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV----------KG-- 97 (391)
T ss_pred CCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc----------cC--
Confidence 79999999999987664 333333322222233331 124578888888742 22
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
|.+|.+++..|..+.|+. |+++.|.++.
T Consensus 98 ----------------As~G~GLGN~FLs~iR~v-------------DaifhVVr~f 125 (391)
T KOG1491|consen 98 ----------------ASAGEGLGNKFLSHIRHV-------------DAIFHVVRAF 125 (391)
T ss_pred ----------------cccCcCchHHHHHhhhhc-------------cceeEEEEec
Confidence 378999999999999997 9999998875
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0034 Score=55.37 Aligned_cols=80 Identities=25% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCChhhhHHhhhhCCC-C-CCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||||.+.+++... . +.|..|+.+.....+.+.+. ...+++.|+||-.. +
T Consensus 12 n~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~----------g- 80 (368)
T TIGR00092 12 NVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG----------G- 80 (368)
T ss_pred CCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc----------c-
Confidence 7999999999997765 2 34544433333333333321 23567778887422 1
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
+..|.+++..|..+++.. |++++|.|..
T Consensus 81 -----------------As~g~Glgn~fL~~ir~~-------------d~l~hVvr~f 108 (368)
T TIGR00092 81 -----------------ASKGEGLGNQFLANIREV-------------DIIQHVVRCF 108 (368)
T ss_pred -----------------hhcccCcchHHHHHHHhC-------------CEEEEEEeCC
Confidence 245667788888888776 9999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0065 Score=50.33 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=52.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHh---hhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVR---HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
.+.++|.|.-+. -.+.+. .+...+. +.++++.+=+...|.|-....-.++. +|.+...-...++. .|.
T Consensus 103 gALifvIDaQdd-y~eala-~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kiet-----qrdI~qr~~d~l~d-~gle 174 (347)
T KOG3887|consen 103 GALIFVIDAQDD-YMEALA-RLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIET-----QRDIHQRTNDELAD-AGLE 174 (347)
T ss_pred CeEEEEEechHH-HHHHHH-HHHHHhhheeecCCCceEEEEEEeccCCchhhhhhh-----HHHHHHHhhHHHHh-hhhc
Confidence 899999997542 222222 2222222 23567777788999997654321111 11111111112222 121
Q ss_pred ---ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 188 ---VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..|+ ..+-..+.+-++|.+++++++.+-|
T Consensus 175 ~v~vsf~-LTSIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 175 KVQVSFY-LTSIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cceEEEE-EeeecchHHHHHHHHHHHHHhhhch
Confidence 2344 4455668899999999998876544
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0079 Score=50.36 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCC
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 49 (228)
.||||||+..+..-.- .+.|..|.-......+...+. ++++.|.||-
T Consensus 69 SvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgi 116 (358)
T KOG1487|consen 69 SVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGI 116 (358)
T ss_pred ccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcch
Confidence 4899999999885432 345555555555555555564 5677899974
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.01 Score=52.23 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=53.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHH------HHhhcc----CccccHHHHH--
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIE------KLKEKK----LAPITYPQGL-- 179 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~------~~~~~~----~~~v~~~~~~-- 179 (228)
|-.+++...+|.-+-.--+ ++ -...- -..|+|+|.+|+|+........ ...... ...-+..++.
T Consensus 228 dYglLvVaAddG~~~~tkE-HL-gi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~a 303 (527)
T COG5258 228 DYGLLVVAADDGVTKMTKE-HL-GIALA--MELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLA 303 (527)
T ss_pred ceEEEEEEccCCcchhhhH-hh-hhhhh--hcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHh
Confidence 8889999988865543322 22 12111 2689999999999987643221 111111 1112222231
Q ss_pred HHHHHh--CCceEEEecccCCCCHHHHHHHH
Q psy8274 180 SMAKEI--GAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 180 ~~~~~~--~~~~~~evSa~~~~~v~~lf~~l 208 (228)
..+-+. +..|+|.+|+.+|+|++-+.+-+
T Consensus 304 a~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 304 AKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred hhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 112222 36899999999999987554443
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.042 Score=47.81 Aligned_cols=89 Identities=21% Similarity=0.266 Sum_probs=50.5
Q ss_pred ceEEEEEecCCh---hhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 112 DVFQICFSLVNP---ASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~---~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|+.|+|...+|. ++=+++. .-++. .-.-+++..||.|++++.+..+. +. -|...+..++|+
T Consensus 142 DGaILVVaatDG~MPQTrEHlL-----LArQV-GV~~ivvfiNKvD~V~d~e~leL--------VE-mE~RElLse~gf~ 206 (449)
T KOG0460|consen 142 DGAILVVAATDGPMPQTREHLL-----LARQV-GVKHIVVFINKVDLVDDPEMLEL--------VE-MEIRELLSEFGFD 206 (449)
T ss_pred CceEEEEEcCCCCCcchHHHHH-----HHHHc-CCceEEEEEecccccCCHHHHHH--------HH-HHHHHHHHHcCCC
Confidence 999999999984 3333331 22222 22346788899999976554443 22 235566666653
Q ss_pred ---ceEEEeccc---CCC----C---HHHHHHHHHHHhcCC
Q psy8274 188 ---VKYLECSAL---TQK----G---LKTVFDEAIRAVLCP 215 (228)
Q Consensus 188 ---~~~~evSa~---~~~----~---v~~lf~~l~~~i~~~ 215 (228)
+|++.=||+ .|. | |.+|++.+-..|..+
T Consensus 207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 456665554 442 1 445555555544443
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.067 Score=46.53 Aligned_cols=48 Identities=15% Similarity=0.014 Sum_probs=27.7
Q ss_pred CCCCCceEEEEEecCChhhHHH-HHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 107 KKKRCDVFQICFSLVNPASFEN-VRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 107 ~~~~~d~vi~v~Dvt~~~s~~~-~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..-..|+++-|.|+..-..... +.+.....+... =+||.||.|+.++.
T Consensus 113 ~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-----D~ivlNK~Dlv~~~ 161 (323)
T COG0523 113 DGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-----DVIVLNKTDLVDAE 161 (323)
T ss_pred cceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-----cEEEEecccCCCHH
Confidence 4445599999999875433222 221222222211 26778999999863
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=46.69 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=29.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++++|.|+.++.+-.+- .+.+.+.-...+.|+++|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~--~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRCP--QVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCCH--HHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 789999999876443221 223332111235899999999999764
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0063 Score=51.69 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++.+..... ....++. ....+.++. .+.++||||.-
T Consensus 128 nvGKSslin~l~~~~~~~~~~~~g~T~--~~~~~~~~~---~~~l~DtPG~~ 174 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKVGNRPGVTK--GQQWIKLSD---GLELLDTPGIL 174 (276)
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeec--ceEEEEeCC---CEEEEECCCcc
Confidence 799999999999765321 2111111 122334433 46899999973
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG4273|consensus | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.042 Score=45.83 Aligned_cols=97 Identities=15% Similarity=0.314 Sum_probs=60.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-----HHHHHH---------------------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-----ETIEKL--------------------- 165 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-----~~~~~~--------------------- 165 (228)
.++++|||.+...++..+. .|+....-..-+ -++-+|||.|.+... ..-+..
T Consensus 80 ~a~vmvfdlse~s~l~alq-dwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQ-DWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHH-hhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 8999999999999999987 887653322112 235668999976421 000000
Q ss_pred h------hccCccccHHHHHHHHHHhCCceEEEecccCC------------CCHHHHHHHHHHH
Q psy8274 166 K------EKKLAPITYPQGLSMAKEIGAVKYLECSALTQ------------KGLKTVFDEAIRA 211 (228)
Q Consensus 166 ~------~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~------------~~v~~lf~~l~~~ 211 (228)
+ ...........+..||.++| +.|+|.++.+. .||+.+|..+-..
T Consensus 158 egssllgsedasldirga~lewc~e~~-~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHG-FEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcC-ceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 0 00011233445678888999 58999998543 3777777766543
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.044 Score=47.57 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+++++..
T Consensus 14 GaGKTTll~~ll~~ 27 (318)
T PRK11537 14 GAGKTTLLRHILNE 27 (318)
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999965
|
|
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.053 Score=50.37 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHh----CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 173 ITYPQGLSMAKEI----GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 173 v~~~~~~~~~~~~----~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+.++.....+.. .+.|.+-=||..|.||+-+++.++..+..+.+
T Consensus 264 ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~E 312 (721)
T KOG0465|consen 264 PSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSE 312 (721)
T ss_pred CCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhh
Confidence 5555555555542 45677888999999999999999999876544
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.025 Score=57.32 Aligned_cols=47 Identities=28% Similarity=0.312 Sum_probs=32.1
Q ss_pred CceEEEEEecCCh-----hhH----HHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 111 CDVFQICFSLVNP-----ASF----ENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 111 ~d~vi~v~Dvt~~-----~s~----~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
.+|||++.|+.+- +.. ..+. ..+.++.+.. -..||.||.||+|+..-
T Consensus 202 lnGvil~vs~~~Ll~~~~~~~~~~a~~lR-~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 202 LNGVVVTVSLADLLTADPAERKAHARAIR-QRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCeEEEEEEHHHHhCCCHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 3999999998742 211 1222 4455555554 37999999999999864
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.019 Score=49.15 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=59.7
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|+.+++...+. |.+-+++. .. ++.+ -.-++++-||+||..++.-. ...++.++|.+.-
T Consensus 150 DaalLlIA~NEsCPQPQTsEHLa-av--eiM~---LkhiiilQNKiDli~e~~A~----------eq~e~I~kFi~~t~a 213 (466)
T KOG0466|consen 150 DAALLLIAGNESCPQPQTSEHLA-AV--EIMK---LKHIIILQNKIDLIKESQAL----------EQHEQIQKFIQGTVA 213 (466)
T ss_pred hhhhhhhhcCCCCCCCchhhHHH-HH--HHhh---hceEEEEechhhhhhHHHHH----------HHHHHHHHHHhcccc
Confidence 88888777653 44555443 11 1222 24578889999999865422 2344556666643
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.-.|++++||.-+.|++.+.+-+...|.-+-
T Consensus 214 e~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 214 EGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred CCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 2258999999999999999999999887543
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.01 Score=50.63 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++.+.... ....|.+... ...+.+++ .+.++||||-.
T Consensus 131 nvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 131 NVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence 79999999999976542 1112221111 12334443 46799999974
|
|
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.027 Score=52.80 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=28.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|.+..+..+.... +++...... ++-|+++-||+|....++
T Consensus 234 DVfVlV~NaEntlt~sek--~Ff~~vs~~--KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 234 DVFVLVVNAENTLTLSEK--QFFHKVSEE--KPNIFILNNKWDASASEP 278 (749)
T ss_pred CeEEEEecCccHhHHHHH--HHHHHhhcc--CCcEEEEechhhhhcccH
Confidence 888888777665555443 232222222 455778889999987643
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.019 Score=44.51 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++++....
T Consensus 10 GsGKTtl~~~l~~~~ 24 (158)
T cd03112 10 GAGKTTLLNHILTEQ 24 (158)
T ss_pred CCCHHHHHHHHHhcc
Confidence 799999999998753
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.059 Score=47.16 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=40.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|++... +.+. ....+... -.+--++.||.|..... --+..++...+ .|+.
T Consensus 254 d~~iLVl~a~~g~--d~~~--~a~~f~~~--~~~~giIlTKlD~~~~~----------------G~~ls~~~~~~-~Pi~ 310 (336)
T PRK14974 254 DLVIFVGDALAGN--DAVE--QAREFNEA--VGIDGVILTKVDADAKG----------------GAALSIAYVIG-KPIL 310 (336)
T ss_pred ceEEEeeccccch--hHHH--HHHHHHhc--CCCCEEEEeeecCCCCc----------------cHHHHHHHHHC-cCEE
Confidence 8889999987543 2221 11222211 12235667999987531 22445555567 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|.+++++.
T Consensus 311 ~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 311 FLG--VGQGYDDLI 322 (336)
T ss_pred EEe--CCCChhhcc
Confidence 886 789998765
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0097 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||||++++.... ...+.-+.+-. ..+.++. .+.++||||--.
T Consensus 142 NVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~ 189 (322)
T COG1161 142 NVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIP 189 (322)
T ss_pred CCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCC---CeEEecCCCcCC
Confidence 79999999999987652 11111132222 2334444 278899999643
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.031 Score=44.86 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=51.5
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEE
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYL 191 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ 191 (228)
.-++|.|++..+- ..++-.+.+.+ .=++|.||.||...- ..+.+...+-+++. +-.+++
T Consensus 120 ~~v~VidvteGe~---~P~K~gP~i~~-----aDllVInK~DLa~~v------------~~dlevm~~da~~~np~~~ii 179 (202)
T COG0378 120 LRVVVIDVTEGED---IPRKGGPGIFK-----ADLLVINKTDLAPYV------------GADLEVMARDAKEVNPEAPII 179 (202)
T ss_pred eEEEEEECCCCCC---CcccCCCceeE-----eeEEEEehHHhHHHh------------CccHHHHHHHHHHhCCCCCEE
Confidence 6778888875421 11121222211 227889999998752 23434444444443 335899
Q ss_pred EecccCCCCHHHHHHHHHHHhc
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++|+++|.|+++++.++.....
T Consensus 180 ~~n~ktg~G~~~~~~~i~~~~~ 201 (202)
T COG0378 180 FTNLKTGEGLDEWLRFIEPQAL 201 (202)
T ss_pred EEeCCCCcCHHHHHHHHHhhcc
Confidence 9999999999999999877643
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.096 Score=44.46 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=42.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|.+. ..+.+. . ...+.+.. .+--+|.||.|.... .-.+..+....+ .|+.
T Consensus 192 ~~~~LVl~a~~--~~~~~~-~-~~~f~~~~--~~~g~IlTKlDe~~~----------------~G~~l~~~~~~~-~Pi~ 248 (272)
T TIGR00064 192 DEVLLVLDATT--GQNALE-Q-AKVFNEAV--GLTGIILTKLDGTAK----------------GGIILSIAYELK-LPIK 248 (272)
T ss_pred ceEEEEEECCC--CHHHHH-H-HHHHHhhC--CCCEEEEEccCCCCC----------------ccHHHHHHHHHC-cCEE
Confidence 89999999974 333332 2 22222221 234577899998653 223455566667 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|.+++++-
T Consensus 249 ~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 249 FIG--VGEKIDDLA 260 (272)
T ss_pred EEe--CCCChHhCc
Confidence 887 788887653
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.044 Score=41.47 Aligned_cols=43 Identities=9% Similarity=0.075 Sum_probs=29.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|.++++.+.+ ..++.... ..++.+.+.....++.+|.|+.+..
T Consensus 68 D~vviv~~~~-~~s~~~~~-~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 68 DEVIVVTTPE-PTSITDAY-ALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CeEEEEcCCC-hhHHHHHH-HHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 9999998875 55665554 4555555444456778899999744
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.02 Score=50.52 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=12.8
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|+++..
T Consensus 164 nvGKStliN~l~~~ 177 (360)
T TIGR03597 164 NVGKSSLINKLLKQ 177 (360)
T ss_pred CCCHHHHHHHHHhh
Confidence 89999999999974
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.14 Score=46.21 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=24.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+-+++|.|.+-...-.. ....+.+. -.+--+|.||.|....
T Consensus 214 ~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 214 DNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred cEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCCC
Confidence 88999999875422221 12233222 2345677899998653
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=42.95 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=41.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+..++|.|++.. .+.+. +. ....+. -.+--+|.||.|.... .-.+...+...+ .|+.
T Consensus 234 ~~~~LVl~a~~g--~~~~~-~a-~~f~~~--~~~~giIlTKlD~t~~----------------~G~~l~~~~~~~-~Pi~ 290 (318)
T PRK10416 234 HEVLLVLDATTG--QNALS-QA-KAFHEA--VGLTGIILTKLDGTAK----------------GGVVFAIADELG-IPIK 290 (318)
T ss_pred ceEEEEEECCCC--hHHHH-HH-HHHHhh--CCCCEEEEECCCCCCC----------------ccHHHHHHHHHC-CCEE
Confidence 778899998842 33332 21 121111 1234677899996542 223556666778 5888
Q ss_pred EecccCCCCHHHHH
Q psy8274 192 ECSALTQKGLKTVF 205 (228)
Q Consensus 192 evSa~~~~~v~~lf 205 (228)
.++ +|++++++-
T Consensus 291 ~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 291 FIG--VGEGIDDLQ 302 (318)
T ss_pred EEe--CCCChhhCc
Confidence 887 888887763
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.016 Score=45.28 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.5
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.++...
T Consensus 45 GvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 45 GVGKSSLINALLPEA 59 (161)
T ss_dssp TSSHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHhhc
Confidence 899999999999763
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.024 Score=49.84 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.3
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|+|+...
T Consensus 215 gVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 215 GVGKSSLINALLPEA 229 (347)
T ss_pred CCCHHHHHHHhcccc
Confidence 899999999999653
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.98 Score=35.40 Aligned_cols=47 Identities=30% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCC-CC
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTA-GQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~-g~ 49 (228)
|||||||+.++...-- ..-.+++-.+...+.-+|+.+-+.+.|+. |.
T Consensus 15 GvGKtTl~~ki~e~L~--~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~ 62 (179)
T COG1618 15 GVGKTTLVLKIAEKLR--EKGYKVGGFITPEVREGGKRIGFKIVDLATGE 62 (179)
T ss_pred CccHHHHHHHHHHHHH--hcCceeeeEEeeeeecCCeEeeeEEEEccCCc
Confidence 8999999998874211 11133444455556668899999999988 44
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.028 Score=48.07 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.7
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
|||||||+|.+++...
T Consensus 171 g~GKSTlin~l~~~~~ 186 (287)
T cd01854 171 GVGKSTLINALLPDLD 186 (287)
T ss_pred CCCHHHHHHHHhchhh
Confidence 8999999999997543
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.039 Score=48.61 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.++...
T Consensus 182 gVGKSSLIN~L~~~~ 196 (352)
T PRK12289 182 GVGKSSLINRLIPDV 196 (352)
T ss_pred CCCHHHHHHHHcCcc
Confidence 899999999999653
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.13 Score=42.27 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCChhhhHHhhhhC--CCCC--CCCceeeeccceeEEE-cCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTN--AFPG--EYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~--~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~ 53 (228)
++|||+|+|++++. .|.- ...++...-+-....+ .+....+.++||+|.....
T Consensus 17 ~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~ 74 (224)
T cd01851 17 SSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred CCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccc
Confidence 68999999999988 6631 1122221111111111 1234678899999976543
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.046 Score=45.61 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|++....
T Consensus 130 gvGKStLiN~L~~~~ 144 (245)
T TIGR00157 130 GVGKSSLINALDPSV 144 (245)
T ss_pred CCCHHHHHHHHhhhh
Confidence 899999999999653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG2743|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.064 Score=45.94 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=14.0
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
|+|||||+|.++.+..
T Consensus 67 GaGKtTLLn~Il~~~h 82 (391)
T KOG2743|consen 67 GAGKTTLLNYILTGQH 82 (391)
T ss_pred cCChHHHHHHHHccCC
Confidence 8999999999997753
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.037 Score=48.94 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||+|+++..
T Consensus 170 NvGKSTLiN~L~~~ 183 (365)
T PRK13796 170 NVGKSTLINRIIKE 183 (365)
T ss_pred CCcHHHHHHHHHhh
Confidence 89999999999854
|
|
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.075 Score=44.69 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=48.9
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
+.+.++|++||.+-+.-|-.++.+. .++|||.
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndv------------------------------------------------tAiifv~ 233 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDV------------------------------------------------TAIIFVV 233 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCc------------------------------------------------cEEEEEE
Confidence 5788999999998888887788877 8999998
Q ss_pred ecCC--------h--hhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 119 SLVN--------P--ASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 119 Dvt~--------~--~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
..++ + -.+.+.. .+...+.+.+ ..+.+||..||.|+..+
T Consensus 234 acSsyn~vlrED~~qNRL~EaL-~LFksiWnNRwL~tisvIlFLNKqDllae 284 (379)
T KOG0099|consen 234 ACSSYNMVLREDNQQNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQDLLAE 284 (379)
T ss_pred eccchhhhhhcCCchhHHHHHH-HHHHHHHhhhHHhhhheeEEecHHHHHHH
Confidence 7653 1 1122222 3333333322 35789999999998764
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.05 Score=46.61 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=26.9
Q ss_pred CCChhhhHHhhhhCCC------CCCC-CceeeeccceeEEEcCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAF------PGEY-IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~------~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++....- .+.. ......+...-+.+++. =.|.||||...+.
T Consensus 174 GVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 174 GVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred CCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 8999999999985321 1111 11111222333444321 2567999976554
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=47.06 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.8
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
++..+.+.++|.||+-+|.+-....++-.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVT 122 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVT 122 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEec
Confidence 46678899999999999876555544444
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.34 Score=37.93 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=41.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.++++...+ ..++..+. .+++.+.+. +.|+.+|.||.|.... ...++..+++.+|+ +++
T Consensus 116 D~vliv~~~~-~~~~~~~~-~~~~~l~~~--~~~~~vV~N~~~~~~~---------------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 116 DAALLVTEPT-PSGLHDLE-RAVELVRHF--GIPVGVVINKYDLNDE---------------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred CEEEEEecCC-cccHHHHH-HHHHHHHHc--CCCEEEEEeCCCCCcc---------------hHHHHHHHHHHcCC-CeE
Confidence 9999999876 44666665 666666655 5678899999997542 12356667777774 443
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.081 Score=45.47 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|||||||+|.+++..
T Consensus 174 gvGKStlin~l~~~~ 188 (298)
T PRK00098 174 GVGKSTLLNALAPDL 188 (298)
T ss_pred CCCHHHHHHHHhCCc
Confidence 899999999998653
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.19 Score=36.16 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=26.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-C-CCCEEEEEeC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-P-STPIILVGTK 152 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~-~~piilv~nK 152 (228)
|.++++.+. +..++..+. .+++.+++.. + ...+.+|.|+
T Consensus 66 D~vlvvv~~-~~~s~~~~~-~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQ-DLPSIRNAK-RLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CeEEEEecC-ChHHHHHHH-HHHHHHHHcCCCCcCceEEEecC
Confidence 999999875 466777776 7777766653 2 3456677775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.7 Score=34.36 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=62.4
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
+.|-|+|+.|.+..-|+..++ .-+..+...+.--.+.++++-....+. ..+..++..+++..+.+ |
T Consensus 64 rIDlIVFvinl~sk~SL~~ve-~SL~~vd~~fflGKVCfl~t~a~~~~~------------~sv~~~~V~kla~~y~~-p 129 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVE-ASLSHVDPSFFLGKVCFLATNAGRESH------------CSVHPNEVRKLAATYNS-P 129 (176)
T ss_pred eeEEEEEEEecCCcccHHHHH-HHHhhCChhhhccceEEEEcCCCcccc------------cccCHHHHHHHHHHhCC-C
Confidence 359999999999999999887 444455433322234455555554443 45899999999999995 8
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++.+.-.+.++...+=.++++.+
T Consensus 130 lL~~~le~~~~~~~lAqRLL~~l 152 (176)
T PF11111_consen 130 LLFADLENEEGRTSLAQRLLRML 152 (176)
T ss_pred EEEeecccchHHHHHHHHHHHHH
Confidence 88887777766666666665543
|
CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival []. |
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.053 Score=44.79 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCCCEEEEEeCCCCCCchHHHH----HHhhccCccccHHHHHHHHHHh----C-----CceEEEecccCCCCHHHHHHHH
Q psy8274 142 PSTPIILVGTKLDLRDDKETIE----KLKEKKLAPITYPQGLSMAKEI----G-----AVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~----~-----~~~~~evSa~~~~~v~~lf~~l 208 (228)
.+.++|+..||-|+.++.--.. -+-++....-+.+.+..|.-++ + ++.-..++|.+-+|++-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 4789999999999987531100 0111112223334444444432 1 1223456778889999999999
Q ss_pred HHHhcCC
Q psy8274 209 IRAVLCP 215 (228)
Q Consensus 209 ~~~i~~~ 215 (228)
-..+++.
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 9888764
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.2 Score=43.64 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=50.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|+|+-|.|+-++.+-..- .+.+.....|.++|+||.||.... +...=...+.+..+ ...+
T Consensus 36 d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-------------~~~~W~~~~~~~~~-~~~~ 95 (322)
T COG1161 36 DVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-------------VTKKWKKYFKKEEG-IKPI 95 (322)
T ss_pred CEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-------------HHHHHHHHHHhcCC-CccE
Confidence 999999999988775432 444444456779999999999853 22222333333334 4577
Q ss_pred EecccCCCCHHHHHH
Q psy8274 192 ECSALTQKGLKTVFD 206 (228)
Q Consensus 192 evSa~~~~~v~~lf~ 206 (228)
.+++..+.+...+..
T Consensus 96 ~v~~~~~~~~~~i~~ 110 (322)
T COG1161 96 FVSAKSRQGGKKIRK 110 (322)
T ss_pred EEEeecccCccchHH
Confidence 888887777666664
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.07 Score=48.66 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
||||||+||.+++..-.. ...|-| ..+..++.+.. .+.+.|+||--
T Consensus 324 NVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred CCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 799999999999876532 223333 22345555555 36778999953
|
|
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.26 Score=45.11 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=47.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|+|+.+.|+-||--|..- .+..++...-+....+|+.||.||..+.. ...-..+.+..+ ++++
T Consensus 176 DivvqIVDARnPllfr~~--dLe~Yvke~d~~K~~~LLvNKaDLl~~~q--------------r~aWa~YF~~~n-i~~v 238 (562)
T KOG1424|consen 176 DIVVQIVDARNPLLFRSP--DLEDYVKEVDPSKANVLLVNKADLLPPEQ--------------RVAWAEYFRQNN-IPVV 238 (562)
T ss_pred ceEEEEeecCCccccCCh--hHHHHHhccccccceEEEEehhhcCCHHH--------------HHHHHHHHHhcC-ceEE
Confidence 999999999998777654 45555555545567788889999997531 111223444456 6888
Q ss_pred EecccC
Q psy8274 192 ECSALT 197 (228)
Q Consensus 192 evSa~~ 197 (228)
.-||..
T Consensus 239 f~SA~~ 244 (562)
T KOG1424|consen 239 FFSALA 244 (562)
T ss_pred EEeccc
Confidence 888886
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.29 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETI 162 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~ 162 (228)
|.|+++.|..=.--.+-. .+++.+.++ ..| ++-|+++.||....+..
T Consensus 135 DLVlLlIdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~stL 182 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNPSTL 182 (1077)
T ss_pred heeEEEeccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccChHHH
Confidence 999999997643323332 455666666 444 56788999998765433
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.096 Score=43.98 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=45.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH----hCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE----IGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~ 187 (228)
|.+++|.-..-.+..+-+..-++ +. +=++|.||.|+......... ......+.+. |.
T Consensus 144 D~~v~v~~Pg~GD~iQ~~KaGim----Ei----aDi~vVNKaD~~gA~~~~~~----------l~~~l~l~~~~~~~W~- 204 (266)
T PF03308_consen 144 DTVVLVLVPGLGDEIQAIKAGIM----EI----ADIFVVNKADRPGADRTVRD----------LRSMLHLLREREDGWR- 204 (266)
T ss_dssp SEEEEEEESSTCCCCCTB-TTHH----HH-----SEEEEE--SHHHHHHHHHH----------HHHHHHHCSTSCTSB--
T ss_pred CeEEEEecCCCccHHHHHhhhhh----hh----ccEEEEeCCChHHHHHHHHH----------HHHHHhhccccccCCC-
Confidence 99999988776555544331222 11 22677899995543221111 1111222111 23
Q ss_pred ceEEEecccCCCCHHHHHHHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+++.+||.++.|++++++.+.+.
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999999999988774
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.024 Score=50.49 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=25.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|+++.|||.+-.-.-+-+. -|-.. .+ -++|-+...||+|...
T Consensus 127 dgavav~dasagve~qtlt-vwrqa-dk--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 127 DGAVAVFDASAGVEAQTLT-VWRQA-DK--FKIPAHCFINKMDKLA 168 (753)
T ss_pred cCeEEEEeccCCcccceee-eehhc-cc--cCCchhhhhhhhhhhh
Confidence 9999999987532222222 33221 11 2578888889999664
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.4 Score=42.78 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=38.4
Q ss_pred ceEEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+-+++|.|.+. .+.+..+. ..+.+...-.+-=+|.||.|.... .-.+..+....+ .|+
T Consensus 295 ~e~~LVLsAt~~~~~l~~i~----~~f~~~~~~~i~glIlTKLDEt~~----------------~G~iL~i~~~~~-lPI 353 (767)
T PRK14723 295 VRRLLLLNAASHGDTLNEVV----HAYRHGAGEDVDGCIITKLDEATH----------------LGPALDTVIRHR-LPV 353 (767)
T ss_pred CeEEEEECCCCcHHHHHHHH----HHHhhcccCCCCEEEEeccCCCCC----------------ccHHHHHHHHHC-CCe
Confidence 66788989874 33343332 222221110122356799997653 234566677777 477
Q ss_pred EEecccCCCCH-HHH
Q psy8274 191 LECSALTQKGL-KTV 204 (228)
Q Consensus 191 ~evSa~~~~~v-~~l 204 (228)
..+ -+|.+| +++
T Consensus 354 ~yi--t~GQ~VPdDL 366 (767)
T PRK14723 354 HYV--STGQKVPEHL 366 (767)
T ss_pred EEE--ecCCCChhhc
Confidence 666 356666 443
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.094 Score=42.27 Aligned_cols=40 Identities=80% Similarity=1.144 Sum_probs=38.5
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
+..+|++++|..++++|+++++++.++|.+.+++.+.+.+
T Consensus 144 g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 144 GLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999998765
|
|
| >PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.73 Score=42.72 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=69.5
Q ss_pred ccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----hhhHHHHHHhhHHHHhh
Q psy8274 81 ALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N----PASFENVRAKWYPEVRH 139 (228)
Q Consensus 81 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~----~~s~~~~~~~~~~~l~~ 139 (228)
+..|-+++ |.|.+..-+..+..| |++++|--+- | .+++.++. ..++.+++
T Consensus 300 aGFGaDlGaEKF~dIkcr~~gl~P--------~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~-RHIenvr~ 370 (557)
T PRK13505 300 AGFGADLGAEKFLDIKCRKAGLKP--------DAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLE-RHIENIRK 370 (557)
T ss_pred ccccCCCCCceeeeeecccCCCCC--------CEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHH-HHHHHHHH
Confidence 33443332 345555555556667 9999987432 1 23455665 55666666
Q ss_pred hCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEec--ccCCCCHHHHHHHHHHHhcC
Q psy8274 140 HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECS--ALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evS--a~~~~~v~~lf~~l~~~i~~ 214 (228)
+ ++|++|+.||.|...+. ..+....+|++.|+ ++..+. ++-|+|-.++-+.+.+++.+
T Consensus 371 F--GvPvVVAINKFd~DTe~--------------Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 371 F--GVPVVVAINKFVTDTDA--------------EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred c--CCCEEEEEeCCCCCCHH--------------HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHhc
Confidence 5 89999999999988752 23456788888884 665332 44667778888888777663
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.2 Score=34.42 Aligned_cols=43 Identities=5% Similarity=-0.081 Sum_probs=28.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|.++++.+.+ ..++..+. .+++.+.+. ......+|.|+.|...
T Consensus 86 d~viiv~~~~-~~s~~~~~-~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 86 DEALLVTTPE-ISSLRDAD-RVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CcEEEEeCCC-cchHHHHH-HHHHHHHHc-CCceEEEEEeCCcccc
Confidence 9999998865 45666665 556666553 2234568899998654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.6 Score=34.04 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..|++++.+|..... ...+.....+ ..++++ +.+|=+++.+++.+.+.
T Consensus 126 ~~~~i~v~h~~~~~~-------------------~~~~i~~~~~-~~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 126 EKPVIATLHRRSVHP-------------------FVQEIKSRPG-GRVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred CCeEEEEECchhhHH-------------------HHHHHhccCC-cEEEEE---cchhhhhHHHHHHHHHh
Confidence 689999988753221 1233444445 367777 44566788888888664
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.38 Score=34.02 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=15.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYP 135 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~ 135 (228)
|.++++.+. +..++..+. .+++
T Consensus 63 d~viv~~~~-~~~s~~~~~-~~~~ 84 (104)
T cd02042 63 DLVLIPVQP-SPLDLDGLE-KLLE 84 (104)
T ss_pred CEEEEeccC-CHHHHHHHH-HHHH
Confidence 999999886 466776665 5544
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >KOG3929|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.29 Score=41.17 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=25.8
Q ss_pred CChhhhHHhhhhCCCCCCCCceeeeccc--eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 2 VGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 2 vGKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
-|+|++|+++....- ....||..-.|. .+..-+..+=...+|+.+|-..
T Consensus 54 ~~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~ 104 (363)
T KOG3929|consen 54 GGKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTS 104 (363)
T ss_pred CceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCcc
Confidence 467888888764332 234455533333 2222222233467788887544
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.2 Score=37.99 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
||||||++.++...
T Consensus 147 GvGKTTtiakLA~~ 160 (374)
T PRK14722 147 GVGKTTTTAKLAAR 160 (374)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998753
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.34 Score=43.04 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=13.5
Q ss_pred ceEEEEEecCChhhHHHH
Q psy8274 112 DVFQICFSLVNPASFENV 129 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~ 129 (228)
|-+|||.|.+-..+-...
T Consensus 215 d~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 215 DEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred CeEEEEEeccccHhHHHH
Confidence 999999999865554443
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.7 Score=39.26 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=35.6
Q ss_pred ceEEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
.-.++|.|.+. ...+..+ + ..+..-.+-=++.||.|.... .-.+..++...+ .|+
T Consensus 301 ~~~~LVl~at~~~~~~~~~----~---~~f~~~~~~~~I~TKlDEt~~----------------~G~~l~~~~~~~-lPi 356 (420)
T PRK14721 301 VKHLLLLNATSSGDTLDEV----I---SAYQGHGIHGCIITKVDEAAS----------------LGIALDAVIRRK-LVL 356 (420)
T ss_pred ceEEEEEcCCCCHHHHHHH----H---HHhcCCCCCEEEEEeeeCCCC----------------ccHHHHHHHHhC-CCE
Confidence 56778888873 3333322 2 222211222356799997653 334566777777 466
Q ss_pred EEecccCCCCH
Q psy8274 191 LECSALTQKGL 201 (228)
Q Consensus 191 ~evSa~~~~~v 201 (228)
..++ +|.+|
T Consensus 357 ~yvt--~Gq~V 365 (420)
T PRK14721 357 HYVT--NGQKV 365 (420)
T ss_pred EEEE--CCCCc
Confidence 6663 55555
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.1 Score=40.11 Aligned_cols=87 Identities=17% Similarity=0.097 Sum_probs=53.1
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++|-|.|.-||-+-..- ++-..+++..+..-+|+|.||+||+.. -++..=+..+.+++- .--
T Consensus 214 SDVvvqVlDARDPmGTrc~--~ve~ylkke~phKHli~vLNKvDLVPt-------------wvt~~Wv~~lSkeyP-TiA 277 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRCK--HVEEYLKKEKPHKHLIYVLNKVDLVPT-------------WVTAKWVRHLSKEYP-TIA 277 (572)
T ss_pred cceeEEeeeccCCcccccH--HHHHHHhhcCCcceeEEEeeccccccH-------------HHHHHHHHHHhhhCc-cee
Confidence 4999999999998775432 455566666677889999999999974 133333444555544 223
Q ss_pred EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|..|-.+..|-- .+-.+++++-+
T Consensus 278 fHAsi~nsfGKg-alI~llRQf~k 300 (572)
T KOG2423|consen 278 FHASINNSFGKG-ALIQLLRQFAK 300 (572)
T ss_pred eehhhcCccchh-HHHHHHHHHHh
Confidence 444544444433 33344444443
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=2 Score=40.01 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=37.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
...++|.+.+. ++..+. ..+..+.. ..+.-+|.||.|.... .-.+..+...++ .++.
T Consensus 459 ~a~lLVLpAts--s~~Dl~-eii~~f~~---~~~~gvILTKlDEt~~----------------lG~aLsv~~~~~-LPI~ 515 (559)
T PRK12727 459 VTSLLVLPANA--HFSDLD-EVVRRFAH---AKPQGVVLTKLDETGR----------------FGSALSVVVDHQ-MPIT 515 (559)
T ss_pred CCcEEEEECCC--ChhHHH-HHHHHHHh---hCCeEEEEecCcCccc----------------hhHHHHHHHHhC-CCEE
Confidence 45567777653 344333 33333322 2456788999997542 345666677777 4666
Q ss_pred EecccCCCCH
Q psy8274 192 ECSALTQKGL 201 (228)
Q Consensus 192 evSa~~~~~v 201 (228)
.++ +|.+|
T Consensus 516 yvt--~GQ~V 523 (559)
T PRK12727 516 WVT--DGQRV 523 (559)
T ss_pred EEe--CCCCc
Confidence 663 45555
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.94 Score=40.32 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=33.9
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.|+||-|.|+-||.+-.+- +.-..+.....+.-.|||.||+||+..
T Consensus 147 sDVVleVlDARDPlgtR~~--~vE~~V~~~~gnKkLILVLNK~DLVPr 192 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCP--EVEEAVLQAHGNKKLILVLNKIDLVPR 192 (435)
T ss_pred hheEEEeeeccCCCCCCCh--hHHHHHHhccCCceEEEEeehhccCCH
Confidence 3999999999999885543 233344434345789999999999864
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.95 Score=37.09 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCCCEEEEEeCCCCCCchH--HHHHHhh-----------ccCc-----cccHHHHHHHHHHhCCceEEEecccCCCCHHH
Q psy8274 142 PSTPIILVGTKLDLRDDKE--TIEKLKE-----------KKLA-----PITYPQGLSMAKEIGAVKYLECSALTQKGLKT 203 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~--~~~~~~~-----------~~~~-----~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~ 203 (228)
-.+|.|=|.+|.||..... ..+.+.. ..++ .++.. ...+...+++..|++..+.+.+.|+.
T Consensus 163 lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~-i~~~v~d~~Mv~FlPl~~~~eeSi~~ 241 (273)
T KOG1534|consen 163 LEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKC-IAQLVDDYSMVNFLPLDSSDEESINI 241 (273)
T ss_pred hcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHH-HHHHhccccceeeeecCCCCHHHHHH
Confidence 4689999999999987532 1111110 0011 01111 12333446788899999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q psy8274 204 VFDEAIRAVLCPVPT 218 (228)
Q Consensus 204 lf~~l~~~i~~~~~~ 218 (228)
++..+-.++..-.-.
T Consensus 242 iL~~ID~aiQy~Ed~ 256 (273)
T KOG1534|consen 242 ILSYIDDAIQYGEDL 256 (273)
T ss_pred HHHHHHHHHHhcccc
Confidence 999888877654433
|
|
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.28 Score=39.25 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=37.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 106 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 106 (228)
++.+|++ .++.++++||+++.||++.|.+..+.+....+.+.
T Consensus 133 a~~yAe~-~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 133 AQAYAES-QGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHHHHh-cCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 6777877 56899999999999999999999999988888765
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=88.42 E-value=3.8 Score=37.76 Aligned_cols=65 Identities=9% Similarity=-0.004 Sum_probs=36.5
Q ss_pred EEEEEecCC-hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEE
Q psy8274 114 FQICFSLVN-PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE 192 (228)
Q Consensus 114 vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 192 (228)
.++|.|.+. ...+.. .+..+....+--++.||.|.... .-.+..+...++ .++..
T Consensus 368 ~~LVLdAt~~~~~l~~-------i~~~f~~~~~~g~IlTKlDet~~----------------~G~~l~i~~~~~-lPI~y 423 (484)
T PRK06995 368 RLLLLNATSHGDTLNE-------VVQAYRGPGLAGCILTKLDEAAS----------------LGGALDVVIRYK-LPLHY 423 (484)
T ss_pred eEEEEeCCCcHHHHHH-------HHHHhccCCCCEEEEeCCCCccc----------------chHHHHHHHHHC-CCeEE
Confidence 677888763 322222 22333322233456799997643 334667777777 47766
Q ss_pred ecccCCCCH-HHH
Q psy8274 193 CSALTQKGL-KTV 204 (228)
Q Consensus 193 vSa~~~~~v-~~l 204 (228)
+ -+|.+| +++
T Consensus 424 v--t~GQ~VPeDL 434 (484)
T PRK06995 424 V--SNGQRVPEDL 434 (484)
T ss_pred E--ecCCCChhhh
Confidence 6 456666 443
|
|
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=88.31 E-value=0.26 Score=39.40 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=32.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
+..+|++ .++.|+++||+++.||++.|-+....++.
T Consensus 134 GeaFA~e-hgLifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 134 GEAFARE-HGLIFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred HHHHHHH-cCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 7778888 78999999999999999999999988875
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=88.11 E-value=2.1 Score=38.04 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.0
Q ss_pred ceEEEecccCCCCHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf 205 (228)
+|+|.+|-.+|.|+..+-
T Consensus 333 CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 333 CPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred cceEEeccccCCChHHHH
Confidence 589999999999987543
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.7 Score=29.41 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|+|||++...+...--... .+...++ .+.++|+++...
T Consensus 9 G~Gktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~ 46 (99)
T cd01983 9 GVGKTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLG 46 (99)
T ss_pred CCCHHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCcc
Confidence 7999999988775321101 1112223 577889887643
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.3 Score=44.84 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=30.5
Q ss_pred ceEEEEEecCChhhHHHH--------HHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENV--------RAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~--------~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+..|+.+--+-+.. .+.-+.+++... -..||.|+.||.|+..-
T Consensus 216 NGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 216 NGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred ceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 999999998752222111 113344444443 26899999999999874
|
|
| >PF14331 ImcF-related_N: ImcF-related N-terminal domain | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.5 Score=37.12 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=30.5
Q ss_pred ceEEEEEecCC-----hh--hHHHHHH---hhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVN-----PA--SFENVRA---KWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~-----~~--s~~~~~~---~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+|||+++|+.+ .+ .+....+ .-+.++.... -..||.||.||+|+..-
T Consensus 27 nGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 27 NGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccC
Confidence 99999999863 21 2222221 2333444433 36899999999999875
|
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.09 E-value=3.2 Score=35.16 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 107 KKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 107 ~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
.-.++|.+|+|=-.| +.++.++. ..++.+.+. ++|..+|.||.++..
T Consensus 182 sl~~aD~ai~VTEPT-p~glhD~k-r~~el~~~f--~ip~~iViNr~~~g~ 228 (284)
T COG1149 182 SLKGADLAILVTEPT-PFGLHDLK-RALELVEHF--GIPTGIVINRYNLGD 228 (284)
T ss_pred hhccCCEEEEEecCC-ccchhHHH-HHHHHHHHh--CCceEEEEecCCCCc
Confidence 344459999997776 66777776 666666666 799999999996554
|
|
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=87.06 E-value=0.36 Score=38.20 Aligned_cols=36 Identities=44% Similarity=0.779 Sum_probs=32.5
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 99 (228)
++.+|++++++.+.++||+++.| +.+.|...++..+
T Consensus 144 ~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 144 GANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 78889998888999999999999 9999999988654
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=86.89 E-value=0.92 Score=38.69 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc---ceeEEE--cCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV--DGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~---~~~~~~--~~~~~~~~i~D~~g~~~ 51 (228)
|.|||||+..+.+-.|.....+-..... ..++.+ -+...++.+.||.|..+
T Consensus 52 g~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 52 GLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred CccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 7899999999999888543222111111 111222 35678999999998654
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=86.66 E-value=0.62 Score=36.71 Aligned_cols=48 Identities=50% Similarity=0.761 Sum_probs=41.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 111 (228)
++.+++..+...+.++||+++.|+++.|...++..+..-|..|--++|
T Consensus 138 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~ 185 (187)
T cd04129 138 GKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSEPGAGCC 185 (187)
T ss_pred HHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCcccccCcc
Confidence 445566667778999999999999999999999999999998888777
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=7.2 Score=34.91 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=37.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
.-+++|.|.+.. ...+. ..+.++..-.+-=++.||.|.... .-.+..++...+ .|+.
T Consensus 287 ~e~~LVlsat~~--~~~~~----~~~~~~~~~~~~~~I~TKlDet~~----------------~G~~l~~~~~~~-~Pi~ 343 (388)
T PRK12723 287 AEFHLAVSSTTK--TSDVK----EIFHQFSPFSYKTVIFTKLDETTC----------------VGNLISLIYEMR-KEVS 343 (388)
T ss_pred CeEEEEEcCCCC--HHHHH----HHHHHhcCCCCCEEEEEeccCCCc----------------chHHHHHHHHHC-CCEE
Confidence 357889998764 22222 233333221233466799997653 234556666667 4665
Q ss_pred EecccCCCCH-HHH
Q psy8274 192 ECSALTQKGL-KTV 204 (228)
Q Consensus 192 evSa~~~~~v-~~l 204 (228)
.+ -+|.+| +++
T Consensus 344 yi--t~Gq~vPeDl 355 (388)
T PRK12723 344 YV--TDGQIVPHNI 355 (388)
T ss_pred EE--eCCCCChhhh
Confidence 55 355666 443
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.21 E-value=0.91 Score=40.89 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=9.6
Q ss_pred CCChhhhHHhhh
Q psy8274 1 AVGKTCLLISYT 12 (228)
Q Consensus 1 gvGKTsli~~~~ 12 (228)
|+||||.+-.+.
T Consensus 110 GsGKTTt~~KLA 121 (451)
T COG0541 110 GSGKTTTAGKLA 121 (451)
T ss_pred CCChHhHHHHHH
Confidence 799999886655
|
|
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=85.72 E-value=0.4 Score=37.79 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.++.|.|..+-.........+...+... . +++.||+|+...
T Consensus 115 ~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A----D-vIvlnK~D~~~~ 156 (178)
T PF02492_consen 115 DSIITVVDATNFDELENIPELLREQIAFA----D-VIVLNKIDLVSD 156 (178)
T ss_dssp SEEEEEEEGTTHGGHTTHCHHHHHHHCT-----S-EEEEE-GGGHHH
T ss_pred cceeEEeccccccccccchhhhhhcchhc----C-EEEEeccccCCh
Confidence 88999999865322222221222222222 2 667799999875
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=85.04 E-value=0.66 Score=41.27 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
||||||+||++...... .-..|++.... ..+.+|. .+.+.|.||--..
T Consensus 262 NVGKSSvINsL~~~k~C~vg~~pGvT~sm-qeV~Ldk---~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 262 NVGKSSVINSLKRRKACNVGNVPGVTRSM-QEVKLDK---KIRLLDSPGIVPP 310 (435)
T ss_pred CCChhHHHHHHHHhccccCCCCccchhhh-hheeccC---CceeccCCceeec
Confidence 79999999999977652 22233332222 2333343 5788899986543
|
|
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=84.68 E-value=0.68 Score=38.04 Aligned_cols=42 Identities=36% Similarity=0.535 Sum_probs=36.4
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhhCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVPTV 105 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~ 105 (228)
++.+|++++++.++++||+++.+ |++.|...++..+...+..
T Consensus 140 g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 140 GTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCCc
Confidence 78899999999999999999985 9999999999987755533
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=84.32 E-value=0.63 Score=37.70 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=34.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
++.+|.+. ++.|.++||++|.|+++.|...++.++.
T Consensus 140 ge~lA~e~-G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 140 GEALAREY-GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHh-CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 89999998 7999999999999999999999999985
|
|
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.9 Score=35.99 Aligned_cols=40 Identities=68% Similarity=1.022 Sum_probs=34.1
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
++.++++.+...+.++||+++.|+++.|...++.++.+.+
T Consensus 142 ~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~~ 181 (191)
T cd01875 142 GGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181 (191)
T ss_pred HHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcccc
Confidence 4556666777789999999999999999999999988654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=83.95 E-value=7.8 Score=33.99 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=12.6
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|.|||||+..+.+.
T Consensus 187 GTGKTSLCKaLaQk 200 (423)
T KOG0744|consen 187 GTGKTSLCKALAQK 200 (423)
T ss_pred CCChhHHHHHHHHh
Confidence 78999999999875
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=83.92 E-value=0.97 Score=35.66 Aligned_cols=47 Identities=43% Similarity=0.746 Sum_probs=36.5
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 111 (228)
..+++..+.+.+.++||+++.|+++.|...++..+.+.+.......|
T Consensus 140 ~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~~~~~~~~~ 186 (189)
T cd04134 140 LAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHPHSSAC 186 (189)
T ss_pred HHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccccCcCCCcc
Confidence 34555556678899999999999999999999999877755444433
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=83.91 E-value=10 Score=34.02 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=11.8
Q ss_pred EEeeeeeeCCCCcccc
Q psy8274 38 PINLGLWDTAGQEDYD 53 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~ 53 (228)
.+.+.+.||.|...+.
T Consensus 281 ~~d~ILVDTaGrs~~D 296 (407)
T COG1419 281 DCDVILVDTAGRSQYD 296 (407)
T ss_pred cCCEEEEeCCCCCccC
Confidence 3577888999976654
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=83.29 E-value=0.62 Score=33.70 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
||||||+++.+...
T Consensus 9 gsGKST~a~~La~~ 22 (121)
T PF13207_consen 9 GSGKSTLAKELAER 22 (121)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 79999999999874
|
... |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=83.18 E-value=1.4 Score=34.46 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=26.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeC-CCC
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDT-AGQ 49 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~-~g~ 49 (228)
|+|||||+.+++..- .....+..+ .+...+.-+|..+.+.+.|. .|.
T Consensus 9 G~GKTTll~k~i~~l-~~~~~~v~G-f~t~evr~~g~r~GF~iv~l~~g~ 56 (168)
T PF03266_consen 9 GVGKTTLLKKVIEEL-KKKGLPVGG-FYTEEVRENGRRIGFDIVDLNSGE 56 (168)
T ss_dssp TSSHHHHHHHHHHHH-HHTCGGEEE-EEEEEEETTSSEEEEEEEET-TS-
T ss_pred CCCHHHHHHHHHHHh-hccCCccce-EEeecccCCCceEEEEEEECcCCC
Confidence 799999999988531 111111112 22233334677777888887 443
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=83.04 E-value=0.66 Score=30.17 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=11.4
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||+..+..
T Consensus 33 GsGKSTllDAi~~ 45 (62)
T PF13555_consen 33 GSGKSTLLDAIQT 45 (62)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999988874
|
|
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=82.48 E-value=0.89 Score=39.22 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee------ccceeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD------NYSANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~------~~~~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||+|.+........-..+++. .....+.+-.. -.+.+.||||--.
T Consensus 153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGil~ 208 (335)
T KOG2485|consen 153 NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGILV 208 (335)
T ss_pred CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCcCC
Confidence 79999999988755442221222221 22222222221 1256679999643
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.1 Score=35.80 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=33.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 106 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 106 (228)
++.+++.. .+.+.++||++|.||++.|...++.+++..+.++
T Consensus 133 ~~~~a~~~-~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 133 AQAYAERN-GMTFFEVSPLCNFNITESFTELARIVLMRHGRPP 174 (189)
T ss_pred HHHHHHHc-CCEEEEecCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 56666665 4689999999999999999999998886555444
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=82.16 E-value=0.72 Score=33.40 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.4
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|||||||++.|...
T Consensus 8 GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 8 GSGKTTIAKELAER 21 (129)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999998864
|
... |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=82.14 E-value=0.88 Score=35.79 Aligned_cols=38 Identities=53% Similarity=0.879 Sum_probs=31.6
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 101 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (228)
++.+++..+...+.++||+++.|+++.|...++..+.|
T Consensus 138 ~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 138 GEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcC
Confidence 56777776666799999999999999999999876543
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=81.60 E-value=0.89 Score=35.72 Aligned_cols=36 Identities=44% Similarity=0.738 Sum_probs=31.5
Q ss_pred cchhHHhhcchhhhhcccccccc-chhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~ 99 (228)
++.+|++.++..+.++||++|.+ +++.|...++..|
T Consensus 140 ~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 140 GCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred HHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 67888888888999999999995 9999999988644
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=80.94 E-value=1.1 Score=34.22 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 55 LRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
.+...|.. +..+|+ .+++.|+++|+++|.||+..|.+.++.++.
T Consensus 131 qrdv~yee-ak~fae-engl~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 131 QRDVTYEE-AKEFAE-ENGLMFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred cccCcHHH-HHHHHh-hcCeEEEEecccccCcHHHHHHHHHHHHHH
Confidence 33334443 344554 457999999999999999999999998863
|
|
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=80.71 E-value=0.88 Score=33.87 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.+...-
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999998653
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.68 E-value=13 Score=33.83 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC--------------------hhhHHHHHHhhHHHHhhhCCCCCEEE
Q psy8274 89 TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN--------------------PASFENVRAKWYPEVRHHCPSTPIIL 148 (228)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~--------------------~~s~~~~~~~~~~~l~~~~~~~piil 148 (228)
|.|.+..-+.++..| |++++|--+-- ...|.++. +.++.++++ .+|++|
T Consensus 306 EKF~dIK~r~~gl~P--------davVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~-~Hi~Nikkf--gvp~VV 374 (554)
T COG2759 306 EKFFDIKCRSSGLKP--------DAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLL-KHIENIKKF--GVPVVV 374 (554)
T ss_pred hhhcceeccccCCCC--------CeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHH-HHHHHHHHc--CCCeEE
Confidence 455555666677778 99999976431 12344443 334444444 799999
Q ss_pred EEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEE--ecccCCCCHHHHHHHHHHHhcC
Q psy8274 149 VGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLE--CSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e--vSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.||.-...+. .......++.++| +++.- +=++-|+|-.++-+.++..+-+
T Consensus 375 AIN~F~tDt~~--------------Ei~~i~~~~~~~g-v~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 375 AINKFPTDTEA--------------EIAAIEKLCEEHG-VEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred EeccCCCCCHH--------------HHHHHHHHHHHcC-CceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 99998644432 2234567888888 45432 3467788889999998888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 228 | ||||
| 1i4d_D | 192 | Crystal Structure Analysis Of Rac1-Gdp Complexed Wi | 3e-84 | ||
| 1ryf_A | 203 | Alternative Splicing Of Rac1 Generates Rac1b, A Sel | 8e-84 | ||
| 1i4t_D | 192 | Crystal Structure Analysis Of Rac1-Gmppnp In Comple | 3e-83 | ||
| 1hh4_A | 192 | Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ | 4e-83 | ||
| 1e96_A | 192 | Structure Of The RacP67PHOX COMPLEX Length = 192 | 4e-83 | ||
| 1ds6_A | 192 | Crystal Structure Of A Rac-Rhogdi Complex Length = | 3e-82 | ||
| 2vrw_A | 184 | Critical Structural Role For The Ph And C1 Domains | 2e-81 | ||
| 2h7v_A | 188 | Co-crystal Structure Of Ypka-rac1 Length = 188 | 1e-80 | ||
| 1g4u_R | 184 | Crystal Structure Of The Salmonella Tyrosine Phosph | 2e-80 | ||
| 1mh1_A | 186 | Small G-Protein Length = 186 | 2e-80 | ||
| 2wkq_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 5e-80 | ||
| 2yin_C | 196 | Structure Of The Complex Between Dock2 And Rac1. Le | 5e-80 | ||
| 2wkr_A | 332 | Structure Of A Photoactivatable Rac1 Containing The | 5e-80 | ||
| 2wkp_A | 332 | Structure Of A Photoactivatable Rac1 Containing Lov | 6e-80 | ||
| 2fju_A | 178 | Activated Rac1 Bound To Its Effector Phospholipase | 9e-80 | ||
| 3sua_A | 184 | Crystal Structure Of The Intracellular Domain Of Pl | 1e-79 | ||
| 3th5_A | 204 | Crystal Structure Of Wild-Type Rac1 Length = 204 | 1e-79 | ||
| 1foe_B | 177 | Crystal Structure Of Rac1 In Complex With The Guani | 1e-79 | ||
| 3b13_B | 184 | Crystal Structure Of The Dhr-2 Domain Of Dock2 In C | 3e-79 | ||
| 2g0n_A | 179 | The Crystal Structure Of The Human Rac3 In Complex | 5e-79 | ||
| 2ic5_A | 180 | Crystal Structure Of Human Rac3 Grown In The Presen | 5e-79 | ||
| 3sbd_A | 187 | Crystal Structure Of Rac1 P29s Mutant Length = 187 | 6e-79 | ||
| 4gzm_A | 204 | Crystal Structure Of Rac1 F28l Mutant Length = 204 | 6e-79 | ||
| 1he1_C | 176 | Crystal Structure Of The Complex Between The Gap Do | 6e-79 | ||
| 2w2t_A | 185 | Rac2 (G12v) In Complex With Gdp Length = 185 | 6e-79 | ||
| 2c2h_A | 192 | Crystal Structure Of The Human Rac3 In Complex With | 7e-79 | ||
| 4gzl_A | 204 | Crystal Structure Of Rac1 Q61l Mutant Length = 204 | 1e-78 | ||
| 3ryt_C | 180 | The Plexin A1 Intracellular Region In Complex With | 1e-78 | ||
| 2w2v_A | 184 | Rac2 (G12v) In Complex With Gtpgs Length = 184 | 2e-77 | ||
| 1a4r_B | 191 | G12v Mutant Of Human Placental Cdc42 Gtpase In The | 8e-61 | ||
| 2dfk_B | 194 | Crystal Structure Of The Cdc42-Collybistin Ii Compl | 8e-61 | ||
| 2odb_A | 192 | The Crystal Structure Of Human Cdc42 In Complex Wit | 8e-61 | ||
| 1grn_A | 191 | Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. | 9e-61 | ||
| 1nf3_A | 195 | Structure Of Cdc42 In A Complex With The Gtpase-Bin | 8e-60 | ||
| 2qrz_A | 189 | Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is | 9e-60 | ||
| 1an0_A | 190 | Cdc42hs-Gdp Complex Length = 190 | 2e-59 | ||
| 2wm9_B | 190 | Structure Of The Complex Between Dock9 And Cdc42. L | 3e-59 | ||
| 1aje_A | 194 | Cdc42 From Human, Nmr, 20 Structures Length = 194 | 5e-59 | ||
| 1kz7_B | 188 | Crystal Structure Of The DhPH FRAGMENT OF MURINE DB | 6e-59 | ||
| 1doa_A | 191 | Structure Of The Rho Family Gtp-Binding Protein Cdc | 7e-59 | ||
| 3vhl_B | 195 | Crystal Structure Of The Dhr-2 Domain Of Dock8 In C | 2e-58 | ||
| 4did_A | 193 | Crystal Structure Of Salmonella Effector N-Terminal | 2e-58 | ||
| 1cee_A | 179 | Solution Structure Of Cdc42 In Complex With The Gtp | 2e-58 | ||
| 1ees_A | 178 | Solution Structure Of Cdc42hs Complexed With A Pept | 5e-58 | ||
| 1gzs_A | 180 | Crystal Structure Of The Complex Between The Gef Do | 5e-58 | ||
| 3gcg_A | 182 | Crystal Structure Of Map And Cdc42 Complex Length = | 7e-58 | ||
| 3eg5_A | 178 | Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W | 1e-57 | ||
| 3qbv_A | 178 | Structure Of Designed Orthogonal Interaction Betwee | 1e-57 | ||
| 1am4_D | 177 | Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S | 1e-57 | ||
| 2kb0_A | 178 | Cdc42(T35a) Length = 178 | 2e-57 | ||
| 2ase_A | 178 | Nmr Structure Of The F28l Mutant Of Cdc42hs Length | 2e-57 | ||
| 1cf4_A | 184 | Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | 2e-57 | ||
| 2atx_A | 194 | Crystal Structure Of The Tc10 Gppnhp Complex Length | 3e-53 | ||
| 2wbl_C | 180 | Three-Dimensional Structure Of A Binary Rop-Prone C | 3e-52 | ||
| 2nty_C | 180 | Rop4-Gdp-Prone8 Length = 180 | 5e-51 | ||
| 3bwd_D | 182 | Crystal Structure Of The Plant Rho Protein Rop5 Len | 2e-50 | ||
| 2j0v_A | 212 | The Crystal Structure Of Arabidopsis Thaliana Rac7- | 4e-49 | ||
| 3tvd_A | 193 | Crystal Structure Of Mouse Rhoa-Gtp Complex Length | 4e-45 | ||
| 4f38_A | 195 | Crystal Structure Of Geranylgeranylated Rhoa In Com | 4e-45 | ||
| 1lb1_B | 192 | Crystal Structure Of The Dbl And Pleckstrin Homolog | 4e-45 | ||
| 1x86_B | 196 | Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A | 5e-45 | ||
| 1cxz_A | 182 | Crystal Structure Of Human Rhoa Complexed With The | 6e-45 | ||
| 1s1c_A | 183 | Crystal Structure Of The Complex Between The Human | 6e-45 | ||
| 3kz1_E | 182 | Crystal Structure Of The Complex Of Pdz-Rhogef DhPH | 7e-45 | ||
| 3lw8_A | 185 | Shigella Ipgb2 In Complex With Human Rhoa, Gdp And | 8e-45 | ||
| 1dpf_A | 180 | Crystal Structure Of A Mg-Free Form Of Rhoa Complex | 1e-44 | ||
| 2q3h_A | 201 | The Crystal Structure Of Rhoua In The Gdp-bound Sta | 1e-44 | ||
| 1ow3_B | 193 | Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With | 2e-44 | ||
| 1cc0_A | 190 | Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le | 2e-44 | ||
| 3msx_A | 180 | Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With | 2e-44 | ||
| 1xcg_B | 178 | Crystal Structure Of Human Rhoa In Complex With DhP | 2e-44 | ||
| 1tx4_B | 177 | RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | 3e-44 | ||
| 2gcn_A | 201 | Crystal Structure Of The Human Rhoc-Gdp Complex Len | 3e-44 | ||
| 1z2c_A | 193 | Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With | 6e-44 | ||
| 1kmq_A | 184 | Crystal Structure Of A Constitutively Activated Rho | 2e-43 | ||
| 2gco_A | 201 | Crystal Structure Of The Human Rhoc-gppnhp Complex | 4e-43 | ||
| 2fv8_A | 207 | The Crystal Structure Of Rhob In The Gdp-Bound Stat | 8e-43 | ||
| 3a58_B | 188 | Crystal Structure Of Sec3p - Rho1p Complex From Sac | 6e-42 | ||
| 2j1l_A | 214 | Crystal Structure Of Human Rho-Related Gtp-Binding | 5e-39 | ||
| 2v55_B | 200 | Mechanism Of Multi-site Phosphorylation From A Rock | 5e-31 | ||
| 1m7b_A | 184 | Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI | 8e-31 | ||
| 1gwn_A | 205 | The Crystal Structure Of The Core Domain Of RhoeRND | 1e-30 | ||
| 3ref_B | 194 | Crystal Structure Of Ehrho1 Bound To Gdp And Magnes | 2e-29 | ||
| 4dvg_A | 188 | Crystal Structure Of E. Histolytica Formin1 Bound T | 8e-29 | ||
| 2cls_A | 198 | The Crystal Structure Of The Human Rnd1 Gtpase In T | 2e-25 | ||
| 2rex_B | 197 | Crystal Structure Of The Effector Domain Of Plxnb1 | 2e-25 | ||
| 3q3j_B | 214 | Crystal Structure Of Plexin A2 Rbd In Complex With | 2e-25 | ||
| 421p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 6e-11 | ||
| 1agp_A | 166 | Three-Dimensional Structures And Properties Of A Tr | 6e-11 | ||
| 1clu_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 7e-11 | ||
| 1jah_A | 166 | H-Ras P21 Protein Mutant G12p, Complexed With Guano | 1e-10 | ||
| 4epr_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 5e-10 | ||
| 4dso_A | 189 | Small-Molecule Ligands Bind To A Distinct Pocket In | 7e-10 | ||
| 6q21_A | 171 | Molecular Switch For Signal Transduction: Structura | 9e-10 | ||
| 2q21_A | 171 | Crystal Structures At 2.2 Angstroms Resolution Of T | 9e-10 | ||
| 2cld_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 9e-10 | ||
| 1wq1_R | 166 | Ras-Rasgap Complex Length = 166 | 9e-10 | ||
| 1rvd_A | 166 | H-Ras Complexed With Diaminobenzophenone-Beta,Gamma | 9e-10 | ||
| 3v4f_A | 166 | H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | 1e-09 | ||
| 2fe4_A | 171 | The Crystal Structure Of Human Neuronal Rab6b In It | 1e-09 | ||
| 3i3s_R | 166 | Crystal Structure Of H-Ras With Thr50 Replaced By I | 1e-09 | ||
| 3lo5_A | 166 | Crystal Structure Of The Dominant Negative S17n Mut | 1e-09 | ||
| 4efm_A | 171 | Crystal Structure Of H-Ras G12v In Complex With Gpp | 1e-09 | ||
| 4efl_A | 171 | Crystal Structure Of H-Ras Wt In Complex With Gppnh | 1e-09 | ||
| 2c5l_A | 173 | Structure Of Plc Epsilon Ras Association Domain Wit | 2e-09 | ||
| 2quz_A | 166 | Crystal Structure Of The Activating H-Rask117r Muta | 2e-09 | ||
| 4q21_A | 189 | Molecular Switch For Signal Transduction: Structura | 2e-09 | ||
| 2x1v_A | 166 | Crystal Structure Of The Activating H-Ras I163f Mut | 2e-09 | ||
| 3k9n_A | 166 | Allosteric Modulation Of H-Ras Gtpase Length = 166 | 2e-09 | ||
| 1iaq_A | 166 | C-H-Ras P21 Protein Mutant With Thr 35 Replaced By | 3e-09 | ||
| 1xcm_A | 167 | Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu | 3e-09 | ||
| 3kkm_A | 172 | Crystal Structure Of H-Ras T35s In Complex With Gpp | 3e-09 | ||
| 1xj0_A | 166 | Crystal Structure Of The Gdp-Bound Form Of The Rasg | 3e-09 | ||
| 1lf0_A | 166 | Crystal Structure Of Rasa59g In The Gtp-Bound Form | 3e-09 | ||
| 521p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 3e-09 | ||
| 1lfd_B | 167 | Crystal Structure Of The Active Ras Protein Complex | 4e-09 | ||
| 221p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-09 | ||
| 2rgb_A | 166 | Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | 4e-09 | ||
| 621p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 4e-09 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 4e-09 | ||
| 3ddc_A | 166 | Crystal Structure Of Nore1a In Complex With Ras Len | 5e-09 | ||
| 1zw6_A | 166 | Crystal Structure Of The Gtp-Bound Form Of Rasq61g | 5e-09 | ||
| 2ocb_A | 180 | Crystal Structure Of Human Rab9b In Complex With A | 7e-09 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 7e-09 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 7e-09 | ||
| 4epx_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 9e-09 | ||
| 4ept_A | 170 | Discovery Of Small Molecules That Bind To K-Ras And | 9e-09 | ||
| 1zvq_A | 166 | Structure Of The Q61g Mutant Of Ras In The Gdp-Boun | 9e-09 | ||
| 1nvv_Q | 166 | Structural Evidence For Feedback Activation By Rasg | 1e-08 | ||
| 721p_A | 166 | Three-Dimensional Structures Of H-Ras P21 Mutants: | 1e-08 | ||
| 2f9l_A | 199 | 3d Structure Of Inactive Human Rab11b Gtpase Length | 1e-08 | ||
| 2rgc_A | 166 | Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | 1e-08 | ||
| 2rga_A | 166 | Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | 1e-08 | ||
| 4efn_A | 171 | Crystal Structure Of H-Ras Q61l In Complex With Gpp | 2e-08 | ||
| 2cl0_X | 166 | Crystal Structure Analysis Of A Fluorescent Form Of | 2e-08 | ||
| 1yzu_A | 170 | Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng | 2e-08 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 2e-08 | ||
| 1z08_A | 170 | Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | 2e-08 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 2e-08 | ||
| 1yzt_A | 184 | Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng | 2e-08 | ||
| 2ery_A | 172 | The Crystal Structure Of The Ras Related Protein Rr | 2e-08 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 2e-08 | ||
| 3gft_A | 187 | Human K-Ras In Complex With A Gtp Analogue Length = | 5e-08 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 5e-08 | ||
| 1yzl_A | 179 | Gppnhp-Bound Rab9 Gtpase Length = 179 | 5e-08 | ||
| 3con_A | 190 | Crystal Structure Of The Human Nras Gtpase Bound Wi | 6e-08 | ||
| 2ke5_A | 174 | Solution Structure And Dynamics Of The Small Gtpase | 6e-08 | ||
| 2kwi_A | 178 | Ralb-Rlip76 (Ralbp1) Complex Length = 178 | 6e-08 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 8e-08 | ||
| 1d5c_A | 162 | Crystal Structure Of Plasmodium Falciparum Rab6 Com | 9e-08 | ||
| 2a78_A | 187 | Crystal Structure Of The C3bot-Rala Complex Reveals | 9e-08 | ||
| 1yzq_A | 170 | Gppnhp-Bound Rab6 Gtpase Length = 170 | 9e-08 | ||
| 1uad_A | 175 | Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi | 9e-08 | ||
| 2bov_A | 206 | Molecular Recognition Of An Adp-Ribosylating Clostr | 9e-08 | ||
| 1s8f_A | 177 | Crystal Structure Of Rab9 Complexed To Gdp Reveals | 1e-07 | ||
| 1wms_A | 177 | High Resolution Crystal Structure Of Human Rab9 Gtp | 1e-07 | ||
| 1u8y_A | 168 | Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal | 1e-07 | ||
| 2y8e_A | 179 | Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo | 1e-07 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 1e-07 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 1e-07 | ||
| 2gil_A | 162 | Structure Of The Extremely Slow Gtpase Rab6a In The | 2e-07 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 2e-07 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 2e-07 | ||
| 1yzk_A | 184 | Gppnhp Bound Rab11 Gtpase Length = 184 | 2e-07 | ||
| 1oiv_A | 191 | X-Ray Structure Of The Small G Protein Rab11a In Co | 2e-07 | ||
| 1z0a_A | 174 | Gdp-Bound Rab2a Gtpase Length = 174 | 3e-07 | ||
| 3brw_D | 167 | Structure Of The Rap-Rapgap Complex Length = 167 | 3e-07 | ||
| 4dxa_A | 169 | Co-Crystal Structure Of Rap1 In Complex With Krit1 | 3e-07 | ||
| 1gua_A | 167 | Human Rap1a, Residues 1-167, Double Mutant (E30d,K3 | 3e-07 | ||
| 1ky2_A | 182 | Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | 6e-07 | ||
| 2f7s_A | 217 | The Crystal Structure Of Human Rab27b Bound To Gdp | 9e-07 | ||
| 1zc3_A | 175 | Crystal Structure Of The Ral-Binding Domain Of Exo8 | 1e-06 | ||
| 3cwz_A | 188 | Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | 1e-06 | ||
| 1c1y_A | 167 | Crystal Structure Of Rap.Gmppnp In Complex With The | 1e-06 | ||
| 2hv8_A | 172 | Crystal Structure Of Gtp-Bound Rab11 In Complex Wit | 2e-06 | ||
| 4dkx_A | 216 | Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | 2e-06 | ||
| 2d7c_A | 167 | Crystal Structure Of Human Rab11 In Complex With Fi | 2e-06 | ||
| 2gzd_A | 173 | Crystal Structure Of Rab11 In Complex With Rab11-Fi | 2e-06 | ||
| 1x3s_A | 195 | Crystal Structure Of Human Rab18 In Complex With Gp | 2e-06 | ||
| 1z0f_A | 179 | Gdp-Bound Rab14 Gtpase Length = 179 | 2e-06 | ||
| 1oiw_A | 191 | X-ray Structure Of The Small G Protein Rab11a In Co | 2e-06 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 2e-06 | ||
| 2a5j_A | 191 | Crystal Structure Of Human Rab2b Length = 191 | 3e-06 | ||
| 2if0_A | 200 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 3e-06 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 3e-06 | ||
| 3bbp_A | 211 | Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = | 3e-06 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 3e-06 | ||
| 3rap_R | 167 | The Small G Protein Rap2 In A Non Catalytic Complex | 3e-06 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 3e-06 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 4e-06 | ||
| 2iez_A | 220 | Crystal Structure Of Mouse Rab27b Bound To Gdp In M | 4e-06 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 4e-06 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 4e-06 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 4e-06 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 4e-06 | ||
| 3oes_A | 201 | Crystal Structure Of The Small Gtpase Rhebl1 Length | 5e-06 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 5e-06 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 6e-06 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 6e-06 | ||
| 3kko_A | 183 | Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX | 8e-06 | ||
| 2gf9_A | 189 | Crystal Structure Of Human Rab3d In Complex With Gd | 8e-06 | ||
| 2il1_A | 192 | Crystal Structure Of A Predicted Human Gtpase In Co | 8e-06 | ||
| 2iey_A | 195 | Crystal Structure Of Mouse Rab27b Bound To Gdp In H | 9e-06 | ||
| 4drz_A | 196 | Crystal Structure Of Human Rab14 Length = 196 | 9e-06 | ||
| 1vg0_B | 207 | The Crystal Structures Of The Rep-1 Protein In Comp | 1e-05 | ||
| 3bc1_A | 195 | Crystal Structure Of The Complex Rab27a-slp2a Lengt | 1e-05 | ||
| 2zet_A | 203 | Crystal Structure Of The Small Gtpase Rab27b Comple | 1e-05 | ||
| 1vg1_A | 185 | Gdp-bound Rab7 Length = 185 | 1e-05 | ||
| 3law_A | 207 | Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2 | 1e-05 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 1e-05 | ||
| 2fn4_A | 181 | The Crystal Structure Of Human Ras-Related Protein, | 1e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 2e-05 | ||
| 2bku_A | 177 | Kap95p:rangtp Complex Length = 177 | 2e-05 | ||
| 2o52_A | 200 | Crystal Structure Of Human Rab4b In Complex With Gd | 3e-05 | ||
| 1byu_A | 216 | Canine Gdp-Ran Length = 216 | 3e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 4e-05 | ||
| 3pir_A | 183 | Crystal Structure Of M-Rasd41e In Complex With Gppn | 4e-05 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 4e-05 | ||
| 3kkp_A | 183 | Crystal Structure Of M-Ras P40d In Complex With Gpp | 4e-05 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 5e-05 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 5e-05 | ||
| 2atv_A | 196 | The Crystal Structure Of Human Rerg In The Gdp Boun | 5e-05 | ||
| 1z22_A | 168 | Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac | 6e-05 | ||
| 1ek0_A | 170 | Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17 | 7e-05 | ||
| 1x1r_A | 178 | Crystal Structure Of M-Ras In Complex With Gdp Leng | 9e-05 | ||
| 1qg4_A | 216 | Canine Gdp-Ran F72y Mutant Length = 216 | 9e-05 | ||
| 1t91_A | 207 | Crystal Structure Of Human Small Gtpase Rab7(Gtp) L | 1e-04 | ||
| 2ew1_A | 201 | Crystal Structure Of Rab30 In Complex With A Gtp An | 1e-04 | ||
| 1wa5_A | 176 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-04 | ||
| 2bmd_A | 186 | High Resolution Structure Of Gdp-Bound Human Rab4a | 1e-04 | ||
| 2hup_A | 201 | Crystal Structure Of Human Rab43 In Complex With Gd | 2e-04 | ||
| 1rrp_A | 204 | Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = | 2e-04 | ||
| 3ea5_A | 216 | Kap95p Binding Induces The Switch Loops Of Rangdp T | 2e-04 | ||
| 2p5s_A | 199 | Rab Domain Of Human Rasef In Complex With Gdp Lengt | 2e-04 | ||
| 1a2k_C | 216 | Gdpran-Ntf2 Complex Length = 216 | 2e-04 | ||
| 3gj0_A | 221 | Crystal Structure Of Human Rangdp Length = 221 | 3e-04 | ||
| 3tso_A | 178 | Structure Of The Cancer Associated Rab25 Protein In | 3e-04 | ||
| 1qbk_C | 216 | Structure Of The Karyopherin Beta2-ran Gppnhp Nucle | 3e-04 | ||
| 2oil_A | 193 | Crystal Structure Of Human Rab25 In Complex With Gd | 3e-04 | ||
| 3c5c_A | 187 | Crystal Structure Of Human Ras-Like, Family 12 Prot | 4e-04 | ||
| 3dz8_A | 191 | Crystal Structure Of Human Rab3b Gtpase Bound With | 5e-04 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 5e-04 | ||
| 1yu9_A | 175 | Gppnhp-Bound Rab4a Length = 175 | 6e-04 | ||
| 3bfk_A | 181 | Crystal Structure Of Plasmodium Falciparum Rab11a I | 6e-04 |
| >pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192 | Back alignment and structure |
|
| >pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203 | Back alignment and structure |
|
| >pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192 | Back alignment and structure |
|
| >pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192 | Back alignment and structure |
|
| >pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192 | Back alignment and structure |
|
| >pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192 | Back alignment and structure |
|
| >pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184 | Back alignment and structure |
|
| >pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188 | Back alignment and structure |
|
| >pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|1MH1|A Chain A, Small G-Protein Length = 186 | Back alignment and structure |
|
| >pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196 | Back alignment and structure |
|
| >pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332 | Back alignment and structure |
|
| >pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332 | Back alignment and structure |
|
| >pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178 | Back alignment and structure |
|
| >pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184 | Back alignment and structure |
|
| >pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204 | Back alignment and structure |
|
| >pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177 | Back alignment and structure |
|
| >pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184 | Back alignment and structure |
|
| >pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179 | Back alignment and structure |
|
| >pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180 | Back alignment and structure |
|
| >pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187 | Back alignment and structure |
|
| >pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176 | Back alignment and structure |
|
| >pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185 | Back alignment and structure |
|
| >pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204 | Back alignment and structure |
|
| >pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180 | Back alignment and structure |
|
| >pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184 | Back alignment and structure |
|
| >pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191 | Back alignment and structure |
|
| >pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194 | Back alignment and structure |
|
| >pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192 | Back alignment and structure |
|
| >pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191 | Back alignment and structure |
|
| >pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195 | Back alignment and structure |
|
| >pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189 | Back alignment and structure |
|
| >pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190 | Back alignment and structure |
|
| >pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190 | Back alignment and structure |
|
| >pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194 | Back alignment and structure |
|
| >pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188 | Back alignment and structure |
|
| >pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191 | Back alignment and structure |
|
| >pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195 | Back alignment and structure |
|
| >pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193 | Back alignment and structure |
|
| >pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179 | Back alignment and structure |
|
| >pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178 | Back alignment and structure |
|
| >pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180 | Back alignment and structure |
|
| >pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182 | Back alignment and structure |
|
| >pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178 | Back alignment and structure |
|
| >pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178 | Back alignment and structure |
|
| >pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177 | Back alignment and structure |
|
| >pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178 | Back alignment and structure |
|
| >pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178 | Back alignment and structure |
|
| >pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184 | Back alignment and structure |
|
| >pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194 | Back alignment and structure |
|
| >pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180 | Back alignment and structure |
|
| >pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180 | Back alignment and structure |
|
| >pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182 | Back alignment and structure |
|
| >pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212 | Back alignment and structure |
|
| >pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193 | Back alignment and structure |
|
| >pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195 | Back alignment and structure |
|
| >pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192 | Back alignment and structure |
|
| >pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196 | Back alignment and structure |
|
| >pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182 | Back alignment and structure |
|
| >pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183 | Back alignment and structure |
|
| >pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182 | Back alignment and structure |
|
| >pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185 | Back alignment and structure |
|
| >pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180 | Back alignment and structure |
|
| >pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201 | Back alignment and structure |
|
| >pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193 | Back alignment and structure |
|
| >pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190 | Back alignment and structure |
|
| >pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180 | Back alignment and structure |
|
| >pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178 | Back alignment and structure |
|
| >pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177 | Back alignment and structure |
|
| >pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201 | Back alignment and structure |
|
| >pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193 | Back alignment and structure |
|
| >pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184 | Back alignment and structure |
|
| >pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201 | Back alignment and structure |
|
| >pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207 | Back alignment and structure |
|
| >pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188 | Back alignment and structure |
|
| >pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214 | Back alignment and structure |
|
| >pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200 | Back alignment and structure |
|
| >pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184 | Back alignment and structure |
|
| >pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205 | Back alignment and structure |
|
| >pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194 | Back alignment and structure |
|
| >pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188 | Back alignment and structure |
|
| >pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198 | Back alignment and structure |
|
| >pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197 | Back alignment and structure |
|
| >pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214 | Back alignment and structure |
|
| >pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166 | Back alignment and structure |
|
| >pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166 | Back alignment and structure |
|
| >pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189 | Back alignment and structure |
|
| >pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171 | Back alignment and structure |
|
| >pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171 | Back alignment and structure |
|
| >pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166 | Back alignment and structure |
|
| >pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166 | Back alignment and structure |
|
| >pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166 | Back alignment and structure |
|
| >pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171 | Back alignment and structure |
|
| >pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166 | Back alignment and structure |
|
| >pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166 | Back alignment and structure |
|
| >pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173 | Back alignment and structure |
|
| >pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189 | Back alignment and structure |
|
| >pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166 | Back alignment and structure |
|
| >pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166 | Back alignment and structure |
|
| >pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167 | Back alignment and structure |
|
| >pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172 | Back alignment and structure |
|
| >pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167 | Back alignment and structure |
|
| >pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166 | Back alignment and structure |
|
| >pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166 | Back alignment and structure |
|
| >pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170 | Back alignment and structure |
|
| >pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166 | Back alignment and structure |
|
| >pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166 | Back alignment and structure |
|
| >pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166 | Back alignment and structure |
|
| >pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199 | Back alignment and structure |
|
| >pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171 | Back alignment and structure |
|
| >pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166 | Back alignment and structure |
|
| >pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184 | Back alignment and structure |
|
| >pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190 | Back alignment and structure |
|
| >pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174 | Back alignment and structure |
|
| >pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187 | Back alignment and structure |
|
| >pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170 | Back alignment and structure |
|
| >pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175 | Back alignment and structure |
|
| >pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177 | Back alignment and structure |
|
| >pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177 | Back alignment and structure |
|
| >pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168 | Back alignment and structure |
|
| >pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184 | Back alignment and structure |
|
| >pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174 | Back alignment and structure |
|
| >pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167 | Back alignment and structure |
|
| >pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169 | Back alignment and structure |
|
| >pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167 | Back alignment and structure |
|
| >pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182 | Back alignment and structure |
|
| >pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217 | Back alignment and structure |
|
| >pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175 | Back alignment and structure |
|
| >pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188 | Back alignment and structure |
|
| >pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167 | Back alignment and structure |
|
| >pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172 | Back alignment and structure |
|
| >pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216 | Back alignment and structure |
|
| >pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167 | Back alignment and structure |
|
| >pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173 | Back alignment and structure |
|
| >pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195 | Back alignment and structure |
|
| >pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179 | Back alignment and structure |
|
| >pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191 | Back alignment and structure |
|
| >pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183 | Back alignment and structure |
|
| >pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189 | Back alignment and structure |
|
| >pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192 | Back alignment and structure |
|
| >pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195 | Back alignment and structure |
|
| >pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196 | Back alignment and structure |
|
| >pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207 | Back alignment and structure |
|
| >pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195 | Back alignment and structure |
|
| >pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203 | Back alignment and structure |
|
| >pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185 | Back alignment and structure |
|
| >pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177 | Back alignment and structure |
|
| >pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200 | Back alignment and structure |
|
| >pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196 | Back alignment and structure |
|
| >pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168 | Back alignment and structure |
|
| >pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170 | Back alignment and structure |
|
| >pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216 | Back alignment and structure |
|
| >pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207 | Back alignment and structure |
|
| >pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201 | Back alignment and structure |
|
| >pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176 | Back alignment and structure |
|
| >pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186 | Back alignment and structure |
|
| >pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201 | Back alignment and structure |
|
| >pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204 | Back alignment and structure |
|
| >pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216 | Back alignment and structure |
|
| >pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199 | Back alignment and structure |
|
| >pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216 | Back alignment and structure |
|
| >pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221 | Back alignment and structure |
|
| >pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178 | Back alignment and structure |
|
| >pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216 | Back alignment and structure |
|
| >pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193 | Back alignment and structure |
|
| >pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187 | Back alignment and structure |
|
| >pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175 | Back alignment and structure |
|
| >pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = e-106
Identities = 84/223 (37%), Positives = 108/223 (48%), Gaps = 53/223 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL+ + AFP Y PTVF+ Y N+ V GKP++L +WDTAGQ+DYDRLRPL Y
Sbjct: 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFY 103
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P V +CF +
Sbjct: 104 PDA------------------------------------------------SVLLLCFDV 115
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P SF+N+ +WYPEV H C PII+VG K DLR DK + KL+ L P+TY +G
Sbjct: 116 TSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQE 175
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 223
MA+ +GAV YLECSA + VF EA L + +
Sbjct: 176 MARSVGAVAYLECSARLHDNVHAVFQEAAEVAL-----SSRGR 213
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = e-106
Identities = 102/224 (45%), Positives = 125/224 (55%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTC+LI YT+N FP +YIPTVFDN+SANV VDG+ +NLGLWDTAGQEDY RLRPLSY
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D+F + FSL
Sbjct: 79 RGA------------------------------------------------DIFVLAFSL 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
++ AS+ENV KW PE+R P+ PI+LVGTKLDLRDDK + IT QG
Sbjct: 91 ISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL----ADHTNVITSTQGEE 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+ K+IGA Y+ECS+ TQ+ +K VFD AI+ VL P +R
Sbjct: 147 LRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRR 190
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 302 bits (776), Expect = e-106
Identities = 157/213 (73%), Positives = 163/213 (76%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 99
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DVF ICFSL
Sbjct: 100 PQT------------------------------------------------DVFLICFSL 111
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 112 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVL
Sbjct: 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = e-105
Identities = 94/213 (44%), Positives = 118/213 (55%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSI 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR D+ T +L + K P+ +G
Sbjct: 107 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207 | Back alignment and structure |
|---|
Score = 300 bits (769), Expect = e-104
Identities = 92/215 (42%), Positives = 115/215 (53%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK + L LWDTAGQEDYDRLRPLSY
Sbjct: 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DV +CFS+
Sbjct: 95 PDT------------------------------------------------DVILMCFSV 106
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILV K DLR D+ +L K P+ G +
Sbjct: 107 DSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
MA I A YLECSA T++G++ VF+ A RA L
Sbjct: 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 298 bits (766), Expect = e-104
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKT L++SYTTN +P EYIPT FDN+SA V VDG+P+ L L DTAGQ+++D+LRPL Y
Sbjct: 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCY 89
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
T D+F +CFS+
Sbjct: 90 TNT------------------------------------------------DIFLLCFSV 101
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+P+SF+NV KW PE+R HCP PIILVGT+ DLR+D + + +L + K P+
Sbjct: 102 VSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+A+EI A Y+ECSALTQK LK VFD AI A + ++
Sbjct: 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY----SDTQQ 201
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194 | Back alignment and structure |
|---|
Score = 298 bits (764), Expect = e-104
Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 61/223 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL++++ P Y+PTVF+N+S + + L LWDTAGQE+YDRLRPLSY
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DV +CF++
Sbjct: 93 ADS------------------------------------------------DVVLLCFAV 104
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N SF+N+ KW PE++H+ + +LVG K+DLR D +T +G
Sbjct: 105 NNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD----------DVTKQEGDD 154
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 223
+ +++G V Y+E S++ + GL VF++++ + P K
Sbjct: 155 LCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN---KPVPK 194
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = e-103
Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 49/214 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P + D ICF +
Sbjct: 98 PDS------------------------------------------------DAVLICFDI 109
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +
Sbjct: 110 SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169
Query: 181 MAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVL 213
MAK+IGA Y+ECSAL ++ ++ +F A A +
Sbjct: 170 MAKQIGAATYIECSALQSENSVRDIFHVATLACV 203
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = e-103
Identities = 103/215 (47%), Positives = 127/215 (59%), Gaps = 50/215 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYT+N FP +Y+PTVFDN+SANV+V+G +NLGLWDTAGQEDY+RLRPLSY
Sbjct: 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
DVF + FSL
Sbjct: 78 RGA------------------------------------------------DVFILAFSL 89
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
++ AS+ENV KW PE++H+ P PI+LVGTKLDLRDDK+ + PIT QG
Sbjct: 90 ISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFF--IDHPGAVPITTVQGEE 147
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+ K IGA Y+ECS+ +Q+ +K VFD AIR VL P
Sbjct: 148 LKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 288 bits (738), Expect = e-100
Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 49/214 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RPLSY
Sbjct: 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 76
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P + D ICF +
Sbjct: 77 PDS------------------------------------------------DAVLICFDI 88
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +
Sbjct: 89 SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148
Query: 181 MAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVL 213
MAK+IGA Y+ECSAL ++ ++ +F A A +
Sbjct: 149 MAKQIGAATYIECSALQSENSVRDIFHVATLACV 182
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194 | Back alignment and structure |
|---|
Score = 285 bits (731), Expect = 3e-99
Identities = 109/215 (50%), Positives = 135/215 (62%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
P T DVF ICFS+
Sbjct: 88 PMT------------------------------------------------DVFLICFSV 99
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASF+NV+ +W PE++ + P+ P +L+GT++DLRDD +T+ +L + K PI QG
Sbjct: 100 VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AKEIGA Y+ECSALTQKGLKTVFDEAI A+L P
Sbjct: 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 8e-99
Identities = 160/224 (71%), Positives = 167/224 (74%), Gaps = 52/224 (23%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
PQT DV ICFSL
Sbjct: 75 PQT------------------------------------------------DVSLICFSL 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 87 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P K+
Sbjct: 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP----PPVKK 186
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 8e-97
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 50/227 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L + +P Y+PTVF+NY+A + + + + L LWDT+G YD +RPL Y
Sbjct: 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D +CF +
Sbjct: 97 SDS------------------------------------------------DAVLLCFDI 108
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++ KW E+ +CPST ++L+G K DLR D T+ +L +K API+Y QG +
Sbjct: 109 SRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168
Query: 181 MAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVLCPVPTVPKKKRCV 226
+AK++GA YLE SA T +K + ++F A L P+ +K V
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK-PSPLPQKSPV 214
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 | Back alignment and structure |
|---|
Score = 284 bits (727), Expect = 1e-96
Identities = 155/214 (72%), Positives = 162/214 (75%), Gaps = 48/214 (22%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYP 61
VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAG EDYDRLRPLSYP
Sbjct: 166 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121
QT DVF ICFSLV
Sbjct: 226 QT------------------------------------------------DVFLICFSLV 237
Query: 122 NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM 181
+PASF +VRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+M
Sbjct: 238 SPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 297
Query: 182 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
AKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP
Sbjct: 298 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 7e-35
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 64/230 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L + F Y PTV + YS V + +L L DTAGQ++Y L
Sbjct: 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + +S+
Sbjct: 94 ------------------------------------------------IGVHGYVLVYSV 105
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SF+ + Y ++ H P++LVG K DL ++E + +G
Sbjct: 106 TSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPERE------------VQAVEG 152
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+ G ++E SA + + +F + I+ + + +++RC L+
Sbjct: 153 KKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-32
Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + T F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +SL
Sbjct: 73 ------------------------------------------------KNGQGFILVYSL 84
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
VN SF++++ ++ P+ILVG K+DL ++E ++ +G
Sbjct: 85 VNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESERE------------VSSSEG 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+E G ++E SA ++ + +F E +R +
Sbjct: 132 RALAEEWG-CPFMETSAKSKTMVDELFAEIVRQM 164
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-32
Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPTV D Y + D L + DT G + ++ LS
Sbjct: 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSI 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + +S+
Sbjct: 73 ------------------------------------------------SKGHAFILVYSI 84
Query: 121 VNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ S E ++ Y ++ S PI+LVG K D +E + +
Sbjct: 85 TSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESPSRE------------VQSSE 131
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+ ++E SA +K +F E +
Sbjct: 132 AEALARTWK-CAFMETSAKLNHNVKELFQELLNLE 165
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-31
Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y
Sbjct: 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + + +S+
Sbjct: 76 ------------------------------------------------IDINGYILVYSV 87
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE ++ + ++ PI+LVG K DL ++ I+Y +G
Sbjct: 88 TSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHMERV------------ISYEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A+ +LE SA + VF I
Sbjct: 135 KALAESWN-AAFLESSAKENQTAVDVFRRIILEA 167
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-31
Identities = 48/245 (19%), Positives = 87/245 (35%), Gaps = 79/245 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 83
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 84 ------------------------------------------------RSGEGFLCVFSI 95
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 96 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 142
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC---------------PVPTVPKKK 223
+ A++ V Y+E SA T+ + VF + +R + ++
Sbjct: 143 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRE 201
Query: 224 RCVLL 228
RC +L
Sbjct: 202 RCCIL 206
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-31
Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 74 ------------------------------------------------RSGEGFLCVFSI 85
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 86 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 132
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A + V Y+E SA T+ + VF + +R +
Sbjct: 133 KNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-31
Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS+
Sbjct: 88 ------------------------------------------------RSGEGFLCVFSI 99
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
SF + ++ + P +LVG K DL D ++ ++ +
Sbjct: 100 TEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDKRQ------------VSVEEA 146
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A++ V Y+E SA T+ + VF + +R +
Sbjct: 147 KNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-31
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +S+
Sbjct: 73 ------------------------------------------------KNGQGFALVYSI 84
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
++F +++ ++ P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDERV------------VGKEQG 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 132 QNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-31
Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 64/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F +Y PT+ D+Y+ VDG P L + DTAGQE++ +R
Sbjct: 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + F++
Sbjct: 79 ------------------------------------------------RAGHGFLLVFAI 90
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SF V K + ++ P++LVG K DL ++ + +
Sbjct: 91 NDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQRQ------------VPRSEA 137
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ V Y E SA + + F++ +RAV
Sbjct: 138 SAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAV 170
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-30
Identities = 44/215 (20%), Positives = 71/215 (33%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L ++ + P D Y +MVD + + L ++D Q D
Sbjct: 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
QTG D F I FS
Sbjct: 93 CLQTG-----------------------------------------------DAFLIVFS 105
Query: 120 LVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF V + +R P+ILVG K DL +E ++ +
Sbjct: 106 VTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSRE------------VSLEE 152
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
G +A + K++E SA + +F+ A+R +
Sbjct: 153 GRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 186
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-30
Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 80/245 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPT+ D Y + D L + DT G + ++ LS
Sbjct: 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + FS+
Sbjct: 78 ------------------------------------------------SKGHAFILVFSV 89
Query: 121 VNPASFENVRAKWY---PEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ S E + Y +++ P++LVG K D +E + +
Sbjct: 90 TSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDE-TQRE------------VDTRE 135
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL--------------CPVPTVPKKK 223
++A+E ++E SA +K +F E + T K
Sbjct: 136 AQAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194
Query: 224 RCVLL 228
+C L+
Sbjct: 195 KCTLM 199
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-30
Identities = 43/215 (20%), Positives = 70/215 (32%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L ++ + D Y +MVD + + L ++D Q D
Sbjct: 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
QTG D F I FS
Sbjct: 72 CLQTG-----------------------------------------------DAFLIVFS 84
Query: 120 LVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF V + +R P+ILVG K DL +E ++ +
Sbjct: 85 VTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLARSRE------------VSLEE 131
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
G +A + K++E SA + +F+ A+R +
Sbjct: 132 GRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 165
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 7e-30
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 65/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R
Sbjct: 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D F I +S+
Sbjct: 88 ------------------------------------------------RTGDGFLIVYSV 99
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ ASFE+V +++ + S P+ILV K+DL ++ +T QG
Sbjct: 100 TDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHLRK------------VTRDQG 146
Query: 179 LSMAKEIGAVKYLECSALT-QKGLKTVFDEAIRAV 212
MA + + Y+E SA + F + +R +
Sbjct: 147 KEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 9e-30
Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ L + + T F EY P + D YS+ VD +P++L + DTA +
Sbjct: 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP-------- 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F + +S+
Sbjct: 83 -------------------RNCERY---------LN-------------WAHAFLVVYSV 101
Query: 121 VNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SF++ + + H S P +L+G KLD+ ++ +T
Sbjct: 102 DSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMAQYRQ------------VTKA 148
Query: 177 QGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAV 212
+G+++A G + E SA ++ VF EA+R
Sbjct: 149 EGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREA 184
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-29
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 74/239 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 74 ------------------------------------------------RTGEGFLCVFAI 85
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SFE++ + +++ P++LVG K DL + + Q
Sbjct: 86 NNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDL-PSRT------------VDTKQA 131
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL---------CPVPTVPKKKRCVLL 228
+A+ G + ++E SA T++G+ F +R + K +CV++
Sbjct: 132 QDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-29
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 91 ------------------------------------------------RTGEGFLCVFAI 102
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SF ++ + +++ P++LVG K DL + + Q
Sbjct: 103 NNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDL-PTRT------------VDTKQA 148
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+AK G + ++E SA T++G++ F +R +
Sbjct: 149 HELAKSYG-IPFIETSAKTRQGVEDAFYTLVREI 181
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-29
Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 66/215 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + T F EY PT+ Y +D + +++ + DTAGQED R
Sbjct: 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQREGHM 96
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F + + +
Sbjct: 97 ------------------------------------------------RWGEGFVLVYDI 108
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE V + + +ILVG K DL ++ ++ +G
Sbjct: 109 TDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHSRQ------------VSTEEG 155
Query: 179 LSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAV 212
+A E+ + ECSA T +G + +F E R V
Sbjct: 156 EKLATELA-CAFYECSACTGEGNITEIFYELCREV 189
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-29
Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGKT L + + D Y + VDG+ L + DT E
Sbjct: 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL-------- 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ S + L+ + I +S+
Sbjct: 66 -----------------DKSWSQESCLQG---------------------GSAYVIVYSI 87
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE+ + ++R H PIILVG K DL +E ++ +G
Sbjct: 88 ADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLARCRE------------VSVEEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A K++E SA Q + +F+ +R +
Sbjct: 135 RACAVVFD-CKFIETSATLQHNVAELFEGVVRQL 167
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-29
Identities = 38/214 (17%), Positives = 68/214 (31%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + G Y +++VDG+ +L ++D Q+ L
Sbjct: 12 GVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 70
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D + I +S+
Sbjct: 71 ------------------------------------------------AMGDAYVIVYSV 82
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE + ++R PIILVG K DL +E ++ +G
Sbjct: 83 TDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRSRE------------VSVDEG 129
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A K++E SA ++ +F+ +R +
Sbjct: 130 RACAVVFD-CKFIETSAALHHNVQALFEGVVRQI 162
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-29
Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F E PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 73 ------------------------------------------------RTGEGFLCVFAI 84
Query: 121 VNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
N SFE++ ++ +++ P++LVG K DL + + Q
Sbjct: 85 NNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDL-AART------------VESRQA 130
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 131 QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREI 163
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-28
Identities = 47/217 (21%), Positives = 70/217 (32%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ ++ Y F +Y T+ D + V+ + + L LWDTAGQE
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE---EFD--- 68
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQ---KGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
A+T+ +G A VL VF
Sbjct: 69 ---------------------AITKAYYRG-------AQACVL-------------VFST 87
Query: 117 CFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SFE + W +V P LV K+DL DD I
Sbjct: 88 T----DRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDSC------------IKNE 130
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +AK + +++ S + VF L
Sbjct: 131 EAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHL 166
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-28
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 67/216 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL+ + N F G YI T+ D V ++G+ + L +WDTAGQE R R +
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE---RFRTIT 75
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + G G+ V+D
Sbjct: 76 STYYR---------GTH-----------GVIVVYD------------------------- 90
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + SF NV+ +W E+ +C ILVG K D + K +
Sbjct: 91 --VTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPERKV------------VETED 135
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A ++G ++ E SA ++ +F+ VL
Sbjct: 136 AYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL 170
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-27
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 67/217 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKT L+ +T + F TV D V + GK I L +WDTAGQE R +
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---RFNSIT 92
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + A G+ V+D
Sbjct: 93 SAYYR---------SAK-----------GIILVYD------------------------- 107
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ +F+++ KW + + ++LVG KLD D+E IT
Sbjct: 108 --ITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE------------ITRQ 152
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG A++I +++ E SA + +F + + +L
Sbjct: 153 QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-27
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 67/217 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKTC++ + T AF T+ D + + GK + L +WDTAGQE R R +
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---RFRTIT 95
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + A G +D
Sbjct: 96 QSYYR---------SAN-----------GAILAYD------------------------- 110
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ +SF +V W +VR + + +L+G K DL + +E ++
Sbjct: 111 --ITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSELRE------------VSLA 155
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ S+A+ + +E SA ++ F ++
Sbjct: 156 EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-26
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y I A +FD
Sbjct: 85 Y----------IQAQ-----------CAIIMFD--------------------------- 96
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + +++NV W+ ++ C + PI+L G K+D++D K + +
Sbjct: 97 VTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK--------------AKSI 141
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ ++Y + SA + + F R ++
Sbjct: 142 VFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 174
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-26
Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 71/219 (32%)
Query: 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 104
Query: 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115
+ D +
Sbjct: 105 HDHCM------------------------------------------------QVGDAYL 116
Query: 116 ICFSLVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
I +S+ + ASFE + ++R PIILVG K DL +E +
Sbjct: 117 IVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRCRE------------V 163
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ +G + A K++E SA Q +K +F+ +R V
Sbjct: 164 SVSEGRACAVVFD-CKFIETSAAVQHNVKELFEGIVRQV 201
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-26
Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y ++F ++ TV D V K I L +WDTAGQE R R +
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE---RYRTIT 88
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 89 TAYYR---------GAM-----------GFLLMYD------------------------- 103
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + +ILVG K DL D++ +
Sbjct: 104 --IANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDERV------------VPAE 148
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
G +A ++G ++ E SA +K VF+ + +
Sbjct: 149 DGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC 184
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 2e-26
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+CLL + F + T+ + S + V GK + L +WDTAGQE R R +
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---RFRSVT 76
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 77 RSY---------------Y--------RG-------AAGALL-------------VYDIT 93
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ ++ + W + R + IIL G K DL D+E +T+
Sbjct: 94 ----SRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDADRE------------VTFL 136
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E + +LE SALT + ++ F + R +L
Sbjct: 137 EASRFAQENE-LMFLETSALTGENVEEAFVQCARKIL 172
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-26
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+CLL + N F + T+ + S V V GK + L +WDTAGQE R R +
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE---RFRSVT 91
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 92 RSY---------------Y--------RG-------AAGALL-------------VYDIT 108
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ ++ ++ W + R P+ +IL G K DL ++E +T+
Sbjct: 109 ----SRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPERE------------VTFL 151
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E + +LE SALT + ++ F + R +L
Sbjct: 152 EASRFAQENE-LMFLETSALTGENVEEAFLKCARTIL 187
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 2e-26
Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL +T F + T+ + + + V G+ I L +WDTAGQE R R +
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---RFRAVT 81
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A++ V+ I
Sbjct: 82 RSY---------------Y--------RG-------AAGALM-------------VYDIT 98
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+++ ++ W + R+ P+T IIL+G K DL ++ +TY
Sbjct: 99 ----RRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQRD------------VTYE 141
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E G + +LE SA T + ++ F EA + +
Sbjct: 142 EAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIY 177
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 2e-26
Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y + F ++ TV D V K + L +WDTAGQE R R +
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE---RYRTIT 89
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 90 TAYYR---------GAM-----------GFILMYD------------------------- 104
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + +ILVG K D+ +++ +
Sbjct: 105 --ITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEERV------------VPTE 149
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A+++G + E SA ++ F+ + A+
Sbjct: 150 KGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAIC 185
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-26
Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKTCL+ +T FP T+ D V ++G+ + L +WDTAGQE R R +
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---RFRSIT 92
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + A L +D
Sbjct: 93 QSYYR---------SAN-----------ALILTYD------------------------- 107
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ SF + +W E+ + +LVG K+DL + +E ++
Sbjct: 108 --ITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAERRE------------VSQQ 152
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ ++ + YLE SA ++ +F + ++
Sbjct: 153 RAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI 188
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 7e-26
Identities = 47/217 (21%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKT LL +T N F + T+ + + VM+ + +WDTAG E R R +
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE---RYRAIT 91
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L VF +
Sbjct: 92 SAY---------------Y--------RG-------AVGALL-------------VFDLT 108
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ V +W E+ H + ++LVG K DL +E +
Sbjct: 109 ----KHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQARE------------VPTE 151
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+ G + +LE SAL ++ F+ ++ +
Sbjct: 152 EARMFAENNG-LLFLETSALDSTNVELAFETVLKEIF 187
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-26
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGKTC+L ++ +AF +I T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE---RFRTIT 74
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 75 TAYYR---------GAM-----------GIMLVYD------------------------- 89
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF+N+R W + H +++G K D+ D ++ ++
Sbjct: 90 --ITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKRQ------------VSKE 134
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A + G +K++E SA ++ F R +
Sbjct: 135 RGEKLALDYG-IKFMETSAKANINVENAFFTLARDIK 170
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 8e-26
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 99
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 100 SSYYR---------GAH-----------GIIVVYD------------------------- 114
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + SF NV+ +W E+ + + +LVG K DL K + Y
Sbjct: 115 --VTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKV------------VDYT 159
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A +G + +LE SA ++ F +
Sbjct: 160 TAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 195
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 9e-26
Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 68/216 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAG E R R +
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE---RYRAIT 95
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L V+ I
Sbjct: 96 SAY---------------Y--------RG-------AVGALL-------------VYDIA 112
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ENV +W E+R H + I+LVG K DLR + +
Sbjct: 113 ----KHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTD 155
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ + A++ G + ++E SAL ++ F + +
Sbjct: 156 EARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 190
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-25
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L Y ++F ++ TV D + + K I L +WDTAG E R R +
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE---RYRTIT 74
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G ++D
Sbjct: 75 TAYYR---------GAM-----------GFILMYD------------------------- 89
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ N SF V+ W +++ + + ++LVG K D+ D++ ++
Sbjct: 90 --ITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERV------------VSSE 134
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G +A +G ++ E SA +K F+ + +
Sbjct: 135 RGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVIC 170
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-25
Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ +T F + T+ + + V +DGK I L +WDTAGQE R +
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE---SFRSIT 87
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY Y +G A A+L V+ I
Sbjct: 88 RSY---------------Y--------RG-------AAGALL-------------VYDIT 104
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+F ++ W + R H + I+L+G K DL ++ +
Sbjct: 105 ----RRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD------------VKRE 147
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+G + A+E G + ++E SA T ++ F + +
Sbjct: 148 EGEAFAREHG-LIFMETSAKTACNVEEAFINTAKEIY 183
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-25
Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 65/216 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPT--VFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKT + F Y T ++ + G I +WDTAGQE L+ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y IGA G FD
Sbjct: 81 YY----------IGAS-----------GAILFFD-------------------------- 93
Query: 119 SLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ 177
+ + + +N+ +W E + PI++ K+D+++ ++ I+
Sbjct: 94 -VTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNRQK------------ISKKL 139
Query: 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + K +Y E SA T F R
Sbjct: 140 VMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFT 174
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-25
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + + YI T+ D + +DGK I L +WDTAGQE R R +
Sbjct: 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---RFRTIT 82
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 83 SSYYR---------GAH-----------GIIVVYD------------------------- 97
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + SF NV+ +W E+ + + +LVG K DL K + Y
Sbjct: 98 --VTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTKKV------------VDYT 142
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A +G + +LE SA ++ F +
Sbjct: 143 TAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 178
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-25
Identities = 53/217 (24%), Positives = 86/217 (39%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F E T+ + + ++ VDGK I +WDTAGQE R R +
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE---RYRRIT 71
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A+L V+ I
Sbjct: 72 SAY---------------Y--------RG-------AVGALL-------------VYDIA 88
Query: 118 FSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
++ENV +W E+R H + I+LVG K DLR + +
Sbjct: 89 ----KHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHLRA------------VPTD 131
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + A++ + ++E SAL ++ F + +
Sbjct: 132 EARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY 167
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 7e-25
Identities = 51/228 (22%), Positives = 79/228 (34%), Gaps = 79/228 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-----------FDNYSANVMVDGKPINLGLWDTAGQ 49
VGKT +L YT F ++I TV N + G+ I+L LWDTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 50 EDYDRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 107
E R R L ++ + A+ G +FD
Sbjct: 81 E---RFRSLTTAFFR---------DAM-----------GFLLLFD--------------- 102
Query: 108 KKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKL 165
L N SF NVR W +++ H + I+L G K DL D +
Sbjct: 103 ------------LTNEQSFLNVR-NWISQLQMHAYSENPDIVLCGNKSDLEDQRA----- 144
Query: 166 KEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + +A++ G + Y E SA + + + ++
Sbjct: 145 -------VKEEEARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM 184
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-24
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + F +I T+ D V ++GK + L +WDTAGQE R R +
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE---RFRTIT 69
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 70 TAYYR---------GAM-----------GIILVYD------------------------- 84
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + +F N++ +W+ V H ++LVG K D+ + + +T
Sbjct: 85 --ITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM-ETRV------------VTAD 128
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG ++AKE+G + ++E SA + +F + +
Sbjct: 129 QGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 164
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 1e-24
Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 72/221 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ L+ Y TN F + T+ + + ++ VDG + + +WDTAGQE R R L
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE---RFRSLR 73
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+ + G+ F V +
Sbjct: 74 TPFYR---------GSD-----------CCLLTFS------------VDDSQ-------- 93
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAP 172
SF+N+ W E ++ S P +++G K+D+ +++
Sbjct: 94 -------SFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDI-SERQ------------ 132
Query: 173 ITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ + + ++ G Y E SA + F+EA+R VL
Sbjct: 133 VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-24
Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 69/218 (31%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKTCLL+ + AF G +I TV D + + VDG + L +WDTAGQE R R +
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE---RFRSV 76
Query: 59 --SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
+Y + A L ++D
Sbjct: 77 THAYYR---------DAH-----------ALLLLYD------------------------ 92
Query: 117 CFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ N ASF+N++ W E+ + ++L+G K+D ++ +
Sbjct: 93 ---VTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAHERV------------VKR 136
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
G +AKE G + ++E SA T + F + +
Sbjct: 137 EDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK 173
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-24
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 70/218 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL+ +T + F E T+ D + VDG L +WDTAGQE R R L
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE---RFRTLT 81
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + GA G+ V+D
Sbjct: 82 PSYYR---------GAQ-----------GVILVYD------------------------- 96
Query: 118 FSLVNPASFENVRAKWYPEVRHHCPSTPI--ILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ +F + W E+ +C I +LVG K+D +++E +
Sbjct: 97 --VTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDK-ENRE------------VDR 140
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+GL A++ + ++E SA T G++ F+E + ++
Sbjct: 141 NEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKII 177
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-24
Identities = 45/231 (19%), Positives = 76/231 (32%), Gaps = 71/231 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEY--IPTVFDNYSANVMVDGKPINLGL---WDTAGQEDYDRL 55
VGK+ L + + D Y +MVDG+ + L W+ G+ ++ L
Sbjct: 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--L 73
Query: 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115
+ D +
Sbjct: 74 HDHCM------------------------------------------------QVGDAYL 85
Query: 116 ICFSLVNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
I +S+ + ASFE + ++R PIILVG K DL +E +
Sbjct: 86 IVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDLVRXRE------------V 132
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 224
+ +G + A K++E SA Q +K +F+ +R V + K +R
Sbjct: 133 SVSEGRAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNER 182
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 3e-24
Identities = 44/217 (20%), Positives = 74/217 (34%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
AVGK+ L++ + F T+ + V +D + +WDTAGQE R L
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE---RYHSLA 72
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
Y Y +G A A++ V+ I
Sbjct: 73 PMY---------------Y--------RG-------AQAAIV-------------VYDIT 89
Query: 118 FSLVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
N SF + W E++ P+ I L G K DL + + + +
Sbjct: 90 ----NEESFARAK-NWVKELQRQASPNIVIALSGNKADLANKRA------------VDFQ 132
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ S A + + ++E SA T + +F + +
Sbjct: 133 EAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 4e-24
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 79/228 (34%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP----------INLGLWDTAGQ 49
VGKT L YT N F ++I TV D V+ + + ++L LWDTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 50 EDYDRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPK 107
E R R L ++ + A+ G +FD
Sbjct: 95 E---RFRSLTTAFFR---------DAM-----------GFLLMFD--------------- 116
Query: 108 KKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKL 165
L + SF NVR W +++ + C + I+L+G K DL D +E
Sbjct: 117 ------------LTSQQSFLNVR-NWMSQLQANAYCENPDIVLIGNKADLPDQRE----- 158
Query: 166 KEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ Q +A + G + Y E SA T + ++ + + ++
Sbjct: 159 -------VNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM 198
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-24
Identities = 54/215 (25%), Positives = 81/215 (37%), Gaps = 68/215 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAGQE R R L
Sbjct: 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---RFRSLI 80
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
SY + + AV+ V+ I
Sbjct: 81 PSY---------------IRDSTV---------------AVV-------------VYDIT 97
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
N SF KW +VR I+LVG K DL D ++ ++
Sbjct: 98 ----NTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ------------VSTE 140
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211
+G AKE+ V ++E SA +K +F A
Sbjct: 141 EGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAA 174
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-24
Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 67/220 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPL 58
VGKT L+ Y + + +Y T+ D + V VDG K + +WDTAGQE + L
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y GA V+D
Sbjct: 78 FYR----------GAD-----------CCVLVYD-------------------------- 90
Query: 119 SLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPI 173
+ N +SFEN++ W E H + P +++G K+D + K+ +
Sbjct: 91 -VTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-----------V 137
Query: 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ +AK +G + SA + T F+E R+ L
Sbjct: 138 SEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 6e-24
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 69/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+CLL+ + + F +I T+ D V ++GK + L LWDTAGQE R R +
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE---RFRTIT 86
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y + GA+ G+ V+D
Sbjct: 87 TAYYR---------GAM-----------GIILVYD------------------------- 101
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+ + +F N++ +W+ V H ++LVG K D+ + + +T
Sbjct: 102 --VTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDM-ETRV------------VTAD 145
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
QG ++AKE+G + ++E SA + +F + +
Sbjct: 146 QGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 181
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 8e-24
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 68/217 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
VGK+ LL +T N F + T+ + + + ++GK I +WDTAGQE R R +
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE---RYRAIT 79
Query: 59 -SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117
+Y Y +G A+ A++ V+ I
Sbjct: 80 SAY---------------Y--------RG-------AVGALI-------------VYDIS 96
Query: 118 FSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYP 176
+S+EN W E+R + + + L+G K DL + +
Sbjct: 97 ----KSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHLRA------------VPTE 139
Query: 177 QGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + A+E + + E SAL + + F+E I +
Sbjct: 140 ESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIY 175
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 1e-22
Identities = 44/222 (19%), Positives = 65/222 (29%), Gaps = 72/222 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKP-INLGLWDTAGQEDYDRLRPL 58
A GKT L + F +Y T+ D + + + G + L +WD GQ +
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT---IGGKM 72
Query: 59 --SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116
Y G A +L V+ I
Sbjct: 73 LDKY---------------I--------YG-------AQGVLL-------------VYDI 89
Query: 117 CFSLVNPASFENVRAKWYPEVR----HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAP 172
N SFEN+ WY V+ + LVG K+DL +
Sbjct: 90 T----NYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKIDLEHMRT------------ 132
Query: 173 ITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214
I + L +E G SA T + F + +L
Sbjct: 133 IKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILG 173
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-22
Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT L+ Y F +Y T+ D + VMVD + + + +WDTAGQE + L
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y GA VFD
Sbjct: 78 YR----------GAD-----------CCVLVFD--------------------------- 89
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ P +F+ + W E + P +++G K+DL + + ++ +
Sbjct: 90 VTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW------ 142
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ Y E SA ++ F R L
Sbjct: 143 -------CYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-19
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 71/225 (31%)
Query: 1 AVGKTCLLISYTTNAFP--GEYIPTV---FDNYSANVMVDGK---PINLGLWDTAGQEDY 52
GKT LL G TV ++ + + K + L +WD AG+E
Sbjct: 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWP--IQIRDKRKRDLVLNVWDFAGRE-- 67
Query: 53 DRLRPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKR 110
+ ++ YL V+D + K +
Sbjct: 68 -EFYSTHPHF----MT-----QRALYL-----------AVYD------------LSKGQ- 93
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKE--K 168
A + ++ W ++ S+P+ILVGT LD+ D+K+ + + K
Sbjct: 94 -------------AEVDAMK-PWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITK 139
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+L +G ++ + + L + I L
Sbjct: 140 ELLNK---RGFPAIRDY----HFVNATEESDALAKLRKTIINESL 177
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-19
Identities = 35/225 (15%), Positives = 63/225 (28%), Gaps = 75/225 (33%)
Query: 1 AVGKTCLLISYT--TNAFPGEYIPTV-FDNYSANVMVDGKPINLGLW--DTAGQEDYDRL 55
VGK+ L+ +T + F +Y T + A V + +++ L+ DTAG +
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---LY 86
Query: 56 RPL--SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDV 113
+ Y + G A+L V
Sbjct: 87 KEQISQY---------------W--------NG-------VYYAIL-------------V 103
Query: 114 FQICFSLVNPASFENVRAKWYPEVR----HHCPSTPIILVGTKLDLRDDKETIEKLKEKK 169
F + + SFE+ + W+ ++ +LV K DL +
Sbjct: 104 FDVS----SMESFESCK-AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ-------- 150
Query: 170 LAPITYPQGLSMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRAVL 213
+ A + + + SA K F
Sbjct: 151 ---VRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFY 191
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 3e-18
Identities = 42/214 (19%), Positives = 73/214 (34%), Gaps = 61/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ +++ + +N F PT+ + V ++ + +WDTAGQE R
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE---RFA--- 66
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
+L + A A+ + +
Sbjct: 67 ---------------------SLAP----XYYRNAQAAL-----------------VVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ P SF R W E+ I LVG K+D + + + +G
Sbjct: 85 VTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQEGGERK---------VAREEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+E G + + E SA T + + VF +
Sbjct: 135 EKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 6e-17
Identities = 30/222 (13%), Positives = 53/222 (23%), Gaps = 74/222 (33%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV---------DGKPINLGLWDTAGQED 51
GKT LL F + T N + K WD GQE
Sbjct: 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110
Query: 52 YDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRC 111
++ S++ +L
Sbjct: 111 MHASHQF-----------------FMTRSSV--------------YML------------ 127
Query: 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLA 171
+ + + N W + + +P+I+V K+D
Sbjct: 128 -LL-------DSRTDSNKH-YWLRHIEKYGGKSPVIVVMNKIDENPSYN----------- 167
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
I + I ++ S G++++ AVL
Sbjct: 168 -IEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVL 207
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-15
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 VGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ Y T + E P + ++VDG+ L + D G +
Sbjct: 31 SGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPEL 80
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-13
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 114 FQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLA 171
FSL + SF+ V ++ + P++LVGT+ + +
Sbjct: 89 VVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAANPRV--------- 138
Query: 172 PITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
I + ++ ++ Y E A ++ VF + + V+
Sbjct: 139 -IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-15
Identities = 38/251 (15%), Positives = 72/251 (28%), Gaps = 102/251 (40%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLG----------------- 42
+VGK+ +++ T + F T+ + V ++ I
Sbjct: 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNN 76
Query: 43 --------------------LWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSAL 82
+WDTAGQE Y + PL Y GA
Sbjct: 77 VIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR----------GAT-------- 118
Query: 83 TQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP 142
VFD + N + + + W +++
Sbjct: 119 ---CAIVVFD---------------------------ISNSNTLDRAK-TWVNQLKIS-S 146
Query: 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLK 202
+ IILV K+D + + + + A++ + +++ SA T +K
Sbjct: 147 NYIIILVANKIDK-NKFQ------------VDILEVQKYAQDNN-LLFIQTSAKTGTNIK 192
Query: 203 TVFDEAIRAVL 213
+F +
Sbjct: 193 NIFYMLAEEIY 203
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-15
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52
GK+ L+ + T ++ T + Y ++VDG+ + + + AG D
Sbjct: 17 RSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 67
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHH----CPSTPIILVGT--KLDLRDDKETIEK 164
D FSL + SF+ V + + ++ + LVGT ++ +
Sbjct: 73 ADAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV---- 127
Query: 165 LKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + ++ ++ Y E A + VF E + V+
Sbjct: 128 --------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-14
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKTCL + FP T+ D V +DG+ I + LWDTAGQE +
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERF 82
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-09
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 122 NPASFENVRAKWYPEVRHHCPST--PIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
N ASF ++ W E + H + P ILVG K DLR + +
Sbjct: 105 NMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLRSAIQ------------VPTDLAQ 151
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEA 208
A + E SA V +
Sbjct: 152 KFADTHS-MPLFETSAKNPNDNDHV-EAI 178
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 3e-14
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
AVGK+ L+ N F T+ D ++VDG+ L LWDTAGQE +
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF 90
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 5e-12
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
SF N+R +W + + PI+LVG K D+RD T + + G
Sbjct: 112 CEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKC------VPGHFGEK 164
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A G + E SA + R V
Sbjct: 165 LAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-13
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGKT L++ Y N F ++I T+ + + + GK +NL +WDTAGQE +
Sbjct: 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-11
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ SF+ V+ W E+R + +VG K+DL ++ ++ + S
Sbjct: 90 DEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKERH------------VSIQEAES 136
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A+ +G K+ SA KG++ +F + + ++
Sbjct: 137 YAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-13
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+CLL+ ++ + + +YI T+ D V +DGK + L +WDTAGQE +
Sbjct: 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 116 ICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
I + + + SF V+ W E+ + + +LVG K DL+D + +
Sbjct: 86 IVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKRV------------VE 132
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
Y A + +LE SAL ++ F R +
Sbjct: 133 YDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK 170
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 5e-13
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
GK+ L++ + + F T+ +S + V+ + +WDTAGQE R L
Sbjct: 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE---RYHSLA 78
Query: 59 -SY 60
Y
Sbjct: 79 PMY 81
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-10
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N ASFE + KW E++ P+ + L G K DL D ++ +T +
Sbjct: 96 NQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDARK------------VTAEDAQT 142
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G + ++E SA T +K +F E R +
Sbjct: 143 YAQENG-LFFMETSAKTATNVKEIFYEIARRL 173
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-12
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDY 52
VGK+ ++ + + F PT+ + V + +WDTAGQE +
Sbjct: 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
SF ++ KW E++ H + + + G K DL D +E +
Sbjct: 107 KQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDIRE------------VPLKDAKE 153
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+ IG +E SA ++ +F R +
Sbjct: 154 YAESIG-AIVVETSAKNAINIEELFQGISRQI 184
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 2e-12
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV---FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
VGK+ ++ + ++F PT+ F + V + +WDTAG E R R
Sbjct: 16 GVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLE---RFRA 70
Query: 58 L--SY 60
L Y
Sbjct: 71 LAPMY 75
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 5e-11
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+F ++ W E+R H PS + + G K DL D +E +
Sbjct: 90 KEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDVRE------------VMERDAKD 136
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A I ++E SA + +F E R +
Sbjct: 137 YADSIH-AIFVETSAKNAININELFIEISRRIP 168
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL- 58
+VGKT L+ + ++F Y T+ D S + ++ + + L LWDTAG E R R L
Sbjct: 26 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE---RFRSLI 82
Query: 59 -SY 60
SY
Sbjct: 83 PSY 85
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-10
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 122 NPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
N SF+ KW +VR I+LVG K DL D ++ ++ +G
Sbjct: 100 NVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADKRQ------------VSIEEGER 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
AKE+ V ++E SA +K +F A+
Sbjct: 147 KAKELN-VMFIETSAKAGYNVKQLFRRVAAAL 177
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 1e-11
Identities = 33/240 (13%), Positives = 80/240 (33%), Gaps = 54/240 (22%)
Query: 2 VGKTCLL---ISYTTNAFPGEYIPTV----------------FDNYSANVMVDGKPINLG 42
+GK+CL + + + F ++ + + + + D +
Sbjct: 39 IGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98
Query: 43 LW------DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 96
+ D + + Y + + A ++ + + L Q GL+ F++
Sbjct: 99 IVEQTEFIDDQTFQPHRSTALQPYIKR--AAATKLASAEKLMYFCTDQLGLEQDFEQKQM 156
Query: 97 AVLCPVPTVPKKKRCDVFQICF--SLVNPASFENVRAKWYPEVRHHCPST--PIILVGTK 152
K D F + S +F++ K+ + + T PI++V TK
Sbjct: 157 P--------DGKLLVDGFLLGIDVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTK 207
Query: 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
D ++ I +++K+ ++ +E SA + + F ++ +
Sbjct: 208 CDEGVERY------------IRDAHTFALSKK--NLQVVETSARSNVNVDLAFSTLVQLI 253
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.96 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.96 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.96 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.96 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.96 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.96 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.96 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.96 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.96 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.96 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.95 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.95 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.95 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.95 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.95 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.95 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.95 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.95 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.95 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.95 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.95 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.95 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.95 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.95 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.95 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.95 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.95 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.95 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.95 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.95 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.95 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.95 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.95 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.95 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.95 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.95 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.95 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.95 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.95 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.95 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.95 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.95 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.95 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.91 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.95 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.95 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.95 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.95 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.94 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.94 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.94 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.94 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.94 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.94 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.94 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.94 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.93 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.93 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.93 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.93 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.92 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.92 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.92 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.92 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.92 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.92 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.92 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.92 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.91 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.91 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.91 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.91 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.91 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.91 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.9 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.9 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.89 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.89 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.89 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.88 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.88 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.86 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.86 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.86 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.86 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.85 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.84 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.84 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.84 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.84 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.82 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.81 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.8 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.79 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.79 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.79 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.78 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.78 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.78 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.77 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.77 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.76 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.76 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.76 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.75 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.75 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.74 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.74 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.74 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.73 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.72 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.71 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.7 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.69 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.69 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.68 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.68 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.68 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.68 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.67 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.67 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.66 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.66 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.65 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.65 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.64 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.64 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.63 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.62 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.62 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.61 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.61 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.61 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.61 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.61 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.6 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.6 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.58 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.58 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.57 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.57 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.57 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.55 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.55 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.54 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.53 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.53 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.53 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.52 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.5 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.48 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.47 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.45 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.44 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.44 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.42 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.4 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.39 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.39 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.36 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.35 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.32 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.31 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.3 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.3 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.28 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.23 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.2 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.16 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.16 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.12 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.1 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.08 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.03 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.96 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.96 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 98.95 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 98.93 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.8 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 98.76 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.75 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.7 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.65 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.61 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.44 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.28 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.25 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 97.81 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.77 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 97.72 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.59 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.5 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.41 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.36 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.36 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.04 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 97.03 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.92 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.72 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.42 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 96.12 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.77 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 95.0 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 94.88 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 94.18 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 89.32 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 88.9 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 87.23 |
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=236.72 Aligned_cols=152 Identities=30% Similarity=0.509 Sum_probs=130.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+.+.|...|.||++..+ .+.+.+++..+.++||||+|++.|..+++.+++++
T Consensus 23 ~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a---------------- 86 (216)
T 4dkx_A 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDS---------------- 86 (216)
T ss_dssp TSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccc----------------
Confidence 7999999999999999999999997555 56788899999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++++||+.+. .|+..+.... +++|++|||||+|+.+.
T Consensus 87 --------------------------------~~~ilv~di~~~~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 87 --------------------------------AAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred --------------------------------cEEEEEeecchhHHHHHHH-HHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 9999999999999999998 9999888764 67999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|.++.+++..+++++++ +|+|+||++|.||+++|+.+++.+..
T Consensus 134 ------------r~V~~~e~~~~a~~~~~-~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 134 ------------RQVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred ------------CcccHHHHhhHHHHhCC-eeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 77999999999999995 89999999999999999999998864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=214.06 Aligned_cols=172 Identities=38% Similarity=0.744 Sum_probs=149.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 37 ~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 99 (214)
T 3q3j_B 37 QCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS----------------- 99 (214)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC-----------------
Confidence 799999999999999999999999988888888899999999999999999999999999888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||..+.+.|+..+....++.|++||+||+|+.....
T Consensus 100 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 148 (214)
T 3q3j_B 100 -------------------------------DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148 (214)
T ss_dssp -------------------------------SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHH
T ss_pred -------------------------------eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchh
Confidence 9999999999999999954499999999888899999999999987655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcCCCCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~~~~~~~ 220 (228)
..........+.++.+++..+++.+++.+|+++||++|.| |+++|+++++.++......+
T Consensus 149 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC------
T ss_pred hhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 5555555556889999999999999966999999999998 99999999999987665443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=206.33 Aligned_cols=166 Identities=65% Similarity=1.101 Sum_probs=148.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----------------- 90 (194)
T 2atx_A 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT----------------- 90 (194)
T ss_dssp TSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCC-----------------
Confidence 799999999999999998999999888877788888889999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 139 (194)
T 2atx_A 91 -------------------------------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 139 (194)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc
Confidence 9999999999999999997689999998877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++.
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 140 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 555554445577899999999999997689999999999999999999998875
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=203.46 Aligned_cols=169 Identities=94% Similarity=1.493 Sum_probs=150.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 77 (186)
T 1mh1_A 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 77 (186)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCC-----------------
Confidence 799999999999999998999999888888888899999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 78 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 126 (186)
T 1mh1_A 78 -------------------------------DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (186)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred -------------------------------cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch
Confidence 9999999999999999987679999988877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++.+.++.+..
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence 555555555678899999999999996699999999999999999999999986543
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=205.59 Aligned_cols=160 Identities=42% Similarity=0.841 Sum_probs=145.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 33 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 95 (194)
T 3reg_A 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS----------------- 95 (194)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC-----------------
Confidence 799999999999999999999999988888888999999999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+.+..++.|++||+||+|+.....
T Consensus 96 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 144 (194)
T 3reg_A 96 -------------------------------DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS 144 (194)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC
Confidence 9999999999999999985599999998888899999999999986422
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.+..+++..+++.+++..++++||++|.||+++|+++++.+...++.
T Consensus 145 ----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 145 ----------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp ----------TCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC-
T ss_pred ----------CcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCCC
Confidence 568889999999999975599999999999999999999999876654
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=204.76 Aligned_cols=166 Identities=43% Similarity=0.863 Sum_probs=146.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.||++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 17 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 79 (184)
T 1m7b_A 17 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 79 (184)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC-----------------
Confidence 799999999999999988899999888877788889899999999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+....++.|++||+||+|+.+...
T Consensus 80 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 128 (184)
T 1m7b_A 80 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 128 (184)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchh
Confidence 9999999999999999984489999988878899999999999987554
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+|+++||+ ++.||+++|+++++.+++
T Consensus 129 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 129 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 444444555578999999999999986699999999 689999999999998874
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=210.28 Aligned_cols=165 Identities=61% Similarity=1.029 Sum_probs=142.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 19 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 81 (212)
T 2j0v_A 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA----------------- 81 (212)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC-----------------
Confidence 799999999999999998999999888887788899999999999999999999998888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 82 -------------------------------d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 82 -------------------------------DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcc
Confidence 9999999999999999997689999998877899999999999976532
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
... ...+.++.+++..+++.+++.+++++||++|.||+++|+++++.+.....
T Consensus 131 ~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 131 YLA----DHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HHH----TCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred ccc----cccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 111 11235688889999999996699999999999999999999999987544
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=209.54 Aligned_cols=166 Identities=27% Similarity=0.443 Sum_probs=135.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 96 (201)
T 3oes_A 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV----------------- 96 (201)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC-----------------
Confidence 799999999999999999999999888877777788889999999999999999999888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .++|++||+||+|+...
T Consensus 97 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 97 -------------------------------HGYVLVYSVTSLHSFQVIE-SLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 9999999999999999998 9998887763 46899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
+.++..++..+++.+++ +++++||++|.||+++|.++++.+........++++|.||
T Consensus 145 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~~~~~~c~l~ 201 (201)
T 3oes_A 145 ------------REVQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVENSYGQERRCHLM 201 (201)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred ------------cccCHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHhhhhhhccccccccC
Confidence 56888899999999995 9999999999999999999999999888887888889875
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=205.73 Aligned_cols=167 Identities=57% Similarity=0.961 Sum_probs=140.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 30 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 92 (201)
T 2q3h_A 30 AVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT----------------- 92 (201)
T ss_dssp TSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC-----------------
Confidence 799999999999999988899999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+..+.++.|++||+||+|+.....
T Consensus 93 -------------------------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 141 (201)
T 2q3h_A 93 -------------------------------DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141 (201)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH
T ss_pred -------------------------------cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh
Confidence 9999999999999999996579999998878899999999999987655
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++..
T Consensus 142 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 142 VLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 4444444445778889999999999966999999999999999999999988754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=205.99 Aligned_cols=165 Identities=95% Similarity=1.490 Sum_probs=149.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+.+.+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 40 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 102 (204)
T 4gzl_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT----------------- 102 (204)
T ss_dssp TSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC-----------------
Confidence 799999999999999999999999888888888899999999999999999999888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+...|+..+....++.|++||+||+|+.....
T Consensus 103 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 103 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 9999999999999999997689999998888899999999999998877
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~l 204 (204)
T 4gzl_A 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTTC
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHhC
Confidence 77777777778899999999999999878999999999999999999998653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=207.21 Aligned_cols=168 Identities=50% Similarity=0.970 Sum_probs=130.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 44 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~----------------- 106 (214)
T 2j1l_A 44 GCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA----------------- 106 (214)
T ss_dssp TSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CE-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccC-----------------
Confidence 799999999999999988899999888888888899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|++||+||+|+.....
T Consensus 107 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 107 -------------------------------SVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp -------------------------------EEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 9999999999999999997679999988878899999999999988766
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.++..+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 156 LVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred hhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 55555555567899999999999999669999999999999999999999988543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=201.01 Aligned_cols=166 Identities=57% Similarity=1.002 Sum_probs=148.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (201)
T 2gco_A 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 97 (201)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCC-----------------
Confidence 799999999999999988899999888877788899999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++++|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 98 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 98 -------------------------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 9999999999999999995589999988877899999999999988766
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+++++||++|.||+++|+++++.+++
T Consensus 147 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred chhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 555555555677899999999999997689999999999999999999998764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=206.26 Aligned_cols=166 Identities=43% Similarity=0.863 Sum_probs=146.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 100 (205)
T 1gwn_A 38 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 100 (205)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC-----------------
Confidence 799999999999999998899999888877778888899999999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|++||+||+|+.....
T Consensus 101 -------------------------------d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 149 (205)
T 1gwn_A 101 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 149 (205)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchh
Confidence 9999999999999999994499999988877899999999999987555
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++.+++.+|+++||+ ++.||+++|+.+++.+++
T Consensus 150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 150 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 445555555578999999999999986699999999 689999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=200.36 Aligned_cols=169 Identities=54% Similarity=0.957 Sum_probs=143.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (207)
T 2fv8_A 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT----------------- 97 (207)
T ss_dssp TSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCC-----------------
Confidence 799999999999999988888999887877788899999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 98 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (207)
T 2fv8_A 98 -------------------------------DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146 (207)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc
Confidence 9999999999999999995589999988878899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++.+.++.++.
T Consensus 147 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred chhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 555555555577889999999999997689999999999999999999999987543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=199.65 Aligned_cols=165 Identities=62% Similarity=1.044 Sum_probs=126.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++.++
T Consensus 18 ~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 80 (182)
T 3bwd_D 18 AVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA----------------- 80 (182)
T ss_dssp TSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCC-----------------
Confidence 799999999999999988899999888877777788889999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.+...
T Consensus 81 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 81 -------------------------------DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcc
Confidence 9999999999999999997679999998877899999999999976543
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+. ....+.++.+++..+++.+++.+++++||++|.|++++|+++++.++.+
T Consensus 130 ~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 130 FFID--HPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHHH--C--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred cccc--cccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 2111 1223557888999999999966999999999999999999999988753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=196.16 Aligned_cols=157 Identities=27% Similarity=0.410 Sum_probs=139.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 78 (181)
T 3t5g_A 16 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI----------------- 78 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcC-----------------
Confidence 799999999999999999999999888888888999999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|+.+. .|+..+.... .+.|++||+||+|+...
T Consensus 79 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 79 -------------------------------NGYILVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 9999999999999999998 8988887664 37899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTV 219 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~ 219 (228)
+.++.+++..+++.+++ +++++||++|.|++++|.++++.+...+...
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 127 ------------RVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEKMDGAC 174 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTSHHHHHHHHHHHHHHHHTC----
T ss_pred ------------ceecHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence 66889999999999995 8999999999999999999999998766543
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=202.50 Aligned_cols=152 Identities=29% Similarity=0.512 Sum_probs=136.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 24 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 86 (206)
T 2bov_A 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 86 (206)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC-----------------
Confidence 799999999999999988999999888888888899999999999999988877776666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+||+|+...
T Consensus 87 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 87 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 9999999999999999997 89988887754 7999999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.||+++|.++++.+..
T Consensus 135 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 135 ------------RQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------ccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999995 89999999999999999999998864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=197.07 Aligned_cols=151 Identities=32% Similarity=0.555 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|..+.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 14 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 76 (189)
T 4dsu_A 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 76 (189)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcC-----------------
Confidence 799999999999999988999999888888888999999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 77 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~- 123 (189)
T 4dsu_A 77 -------------------------------EGFLCVFAINNTKSFEDIH-HYREQIKRVKDSEDVPMVLVGNKCDLPS- 123 (189)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTCSCCCEEEEEECTTSSS-
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECccCcc-
Confidence 9999999999999999998 8888887754 4799999999999985
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.++ .+++++||++|.|++++|.++.+.+..
T Consensus 124 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 124 ------------RTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp ------------CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4577888999999999 589999999999999999999998863
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=198.72 Aligned_cols=151 Identities=28% Similarity=0.472 Sum_probs=131.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+|+++.+...+.+++..+.+.+||++|++.+..+ ..+++.+
T Consensus 31 ~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~----------------- 92 (187)
T 3c5c_A 31 GAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA----------------- 92 (187)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC-----------------
T ss_pred CCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC-----------------
Confidence 7999999999999999999999998888777888999999999999999887764 4455666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.
T Consensus 93 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 93 -------------------------------HAFLVVYSVDSRQSFDSSS-SYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 9999999999999999998 8999888763 579999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecc-cCCCCHHHHHHHHHHHhcC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSA-LTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa-~~~~~v~~lf~~l~~~i~~ 214 (228)
.. +.++.+++..+++.+++ +++++|| ++|.||+++|+++++.+.+
T Consensus 141 ~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 141 QY------------RQVTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GG------------CSSCHHHHHHHHHHHTC-EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hc------------CccCHHHHHHHHHHcCC-cEEEEeecCccccHHHHHHHHHHHHhh
Confidence 64 56888999999999995 9999999 8999999999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=197.61 Aligned_cols=151 Identities=21% Similarity=0.347 Sum_probs=131.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|...+.+| ...+...+.+++..+.+.+|||+|++.+. +++.+
T Consensus 30 ~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~----------------- 86 (184)
T 3ihw_A 30 SSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV----------------- 86 (184)
T ss_dssp TSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC-----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC-----------------
Confidence 79999999999999998888888 44566788899999999999999998775 55555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|+..+.... .+.|++||+||+|+...
T Consensus 87 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (184)
T 3ihw_A 87 -------------------------------DAVVFVFSLEDEISFQTVY-NYFLRLCSFRNASEVPMVLVGTQDAISAA 134 (184)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHTTSCGGGSCEEEEEECTTCBTT
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999998764 47899999999999632
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
. .+.++.+++..+++.++..+|+++||++|.||+++|+++++.+.+.+
T Consensus 135 ~----------~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 135 N----------PRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp B----------CCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred c----------ccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 2 16788999999999998569999999999999999999999887543
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=190.07 Aligned_cols=152 Identities=28% Similarity=0.498 Sum_probs=134.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 75 (167)
T 1c1y_A 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccC-----------------
Confidence 799999999999999988899999888877788888899999999999998887777667666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 76 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 76 -------------------------------QGFALVYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 9999999999999999988 888887765 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++..+++++||++|.|++++|+++.+.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 124 ------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp ------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ------------ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 5578888999999884369999999999999999999998874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=192.41 Aligned_cols=152 Identities=32% Similarity=0.475 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+.....+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 90 (183)
T 3kkq_A 28 GVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG----------------- 90 (183)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC-----------------
Confidence 799999999999999999999999888888888999999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 91 -------------------------------DGFLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 9999999999999999998 888888664 357899999999999874
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEeccc-CCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSAL-TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~-~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||+ +|.||+++|+++.+.+.+
T Consensus 139 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 139 ------------RKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp ------------CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ------------cCcCHHHHHHHHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 5688899999999999 589999999 999999999999998764
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-29 Score=198.86 Aligned_cols=155 Identities=24% Similarity=0.434 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 39 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 102 (201)
T 2hup_A 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA---------------- 102 (201)
T ss_dssp TSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC----------------
Confidence 7999999999999999888889987555 56778889889999999999998888777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 103 --------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 103 --------------------------------NGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp --------------------------------SEEEEEEETTBHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 9999999999999999998 9999988876 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.+++.+++++||++|.||+++|.++++.+....
T Consensus 150 ------------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 150 ------------REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp ------------CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ------------cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 5588889999999999558999999999999999999999887543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=192.17 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=126.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|.. +.||+++.+...+.+++..+.+.+||++|++. ..+++++
T Consensus 17 ~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~----------------- 73 (178)
T 2iwr_A 17 RSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA----------------- 73 (178)
T ss_dssp GGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhC-----------------
Confidence 799999999999999986 88898888888888999999999999999876 2345555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh---C-CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH---C-PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~-~~~piilv~nK~Dl~ 156 (228)
|++++|||+++++||..+. .|+..+... . ++.|++||+||+|+.
T Consensus 74 -------------------------------d~~ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 74 -------------------------------DAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999998 876665543 2 478999999999995
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... .+.++.+++..+++.++..+++++||++|.|++++|+++++.+...
T Consensus 122 ~~~----------~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 122 ASS----------PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp TTB----------CCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ccc----------cCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 321 1568889999999887446999999999999999999999988653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=197.39 Aligned_cols=152 Identities=25% Similarity=0.425 Sum_probs=132.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 80 (199)
T 2gf0_A 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG----------------- 80 (199)
T ss_dssp TSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHC-----------------
T ss_pred CCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccC-----------------
Confidence 799999999999999988888998877777778899999999999999988877666666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 81 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 81 -------------------------------HAFILVFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999999999999999887 7777776543 4689999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++++.+...
T Consensus 129 -------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 129 -------------REVDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp -------------CSSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred -------------cccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 34677888899999994 899999999999999999999988654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=196.00 Aligned_cols=153 Identities=28% Similarity=0.573 Sum_probs=107.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (183)
T 2fu5_C 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA---------------- 81 (183)
T ss_dssp CC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC----------------
Confidence 7999999999999998888888886555 45678899999999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 82 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 82 --------------------------------MGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 9999999999999999998 8999888764 57899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +++++||++|.||+++|.++.+.+...
T Consensus 129 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 129 ------------RQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred ------------CcCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 45788889999999994 899999999999999999999988753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=190.91 Aligned_cols=156 Identities=28% Similarity=0.467 Sum_probs=136.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 19 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 81 (181)
T 2fn4_A 19 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG----------------- 81 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC-----------------
Confidence 799999999999999999999999888887888899999999999999998887777777666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.+. . .+.|+++|+||+|+...
T Consensus 82 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 82 -------------------------------HGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 888887443 3 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
+.++.+++..++..+++ +++++||++|.|++++|+++.+.+.+.+..
T Consensus 130 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 130 ------------RQVPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHHTTC
T ss_pred ------------cccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 45778889999999994 999999999999999999999998765443
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=188.98 Aligned_cols=152 Identities=29% Similarity=0.511 Sum_probs=132.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.+|.+..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 14 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 76 (168)
T 1u8z_A 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 76 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcC-----------------
Confidence 799999999999999988899999888877788899999999999999988877766666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.+.
T Consensus 77 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 77 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 89888887653 7999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.|++++|+++.+.+.+
T Consensus 125 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 125 ------------RQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45788889999999994 89999999999999999999998864
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=188.03 Aligned_cols=152 Identities=29% Similarity=0.559 Sum_probs=129.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1z08_A 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS---------------- 79 (170)
T ss_dssp TSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccC----------------
Confidence 79999999999999998888888866554 6677788899999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 80 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 80 --------------------------------NGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 9999999999999999998 8998887754 47899999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+.+
T Consensus 127 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 127 ------------RHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 5578888999999999 589999999999999999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-28 Score=187.46 Aligned_cols=154 Identities=29% Similarity=0.536 Sum_probs=136.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 19 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 82 (181)
T 3tw8_B 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT---------------- 82 (181)
T ss_dssp TSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC----------------
Confidence 7999999999999999888888886554 46778899999999999999999999998888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++..+. .|+..+....++.|++||+||+|+...
T Consensus 83 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~- 128 (181)
T 3tw8_B 83 --------------------------------HGVIVVYDVTSAESFVNVK-RWLHEINQNCDDVCRILVGNKNDDPER- 128 (181)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHCTTSEEEEEEECTTCGGG-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCCCchh-
Confidence 9999999999999999998 899999988888999999999998865
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..++..+++ +++++||++|.|++++|+++.+.+...+
T Consensus 129 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 129 -----------KVVETEDAYKFAGQMGI-QLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp -----------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred -----------cccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56788889999999995 9999999999999999999999887543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=188.25 Aligned_cols=153 Identities=27% Similarity=0.362 Sum_probs=120.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+...+.++. .+.+...+.+++..+.+.+||++|++.+.. ++..++..+
T Consensus 12 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~--------------- 76 (169)
T 3q85_A 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTG--------------- 76 (169)
T ss_dssp TSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHC---------------
T ss_pred CCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccC---------------
Confidence 799999999999877765555544 555567788899999999999999988765 666566666
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~ 156 (228)
|++++|||++++++|..+. .|+..+..... +.|+++|+||+|+.
T Consensus 77 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 77 ---------------------------------DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred ---------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 9999999999999999998 88888887754 79999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+. +.++.+++..+++.+++ +++++||++|.|++++|+++++.+...
T Consensus 123 ~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 123 RS------------REVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp GG------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hc------------ccCCHHHHHHHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 64 56888999999999995 999999999999999999999988654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-28 Score=186.50 Aligned_cols=151 Identities=24% Similarity=0.352 Sum_probs=112.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 12 ~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 73 (166)
T 3q72_A 12 GVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMG----------------- 73 (166)
T ss_dssp TSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------C-----------------
T ss_pred CCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhC-----------------
Confidence 79999999999876654 445666667777788899999999999999999998988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 74 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 74 -------------------------------DAYVIVYSVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 9999999999999999998 8888887653 57999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 122 ------------REVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 5688889999999999 499999999999999999999998764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=186.34 Aligned_cols=155 Identities=30% Similarity=0.549 Sum_probs=127.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+. ..+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 20 ~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~--------------- 84 (180)
T 2g6b_A 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA--------------- 84 (180)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC---------------
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC---------------
Confidence 79999999999999885 467788866554 4557899999999999999999998888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+..
T Consensus 85 ---------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 85 ---------------------------------HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 9999999999999999998 8999888776 5799999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. +.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.+.
T Consensus 131 ~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 131 E------------RVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp C------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred c------------cccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5 45778889999999995 89999999999999999999999876543
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=194.84 Aligned_cols=155 Identities=27% Similarity=0.366 Sum_probs=127.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+...+.+++ .+.+...+.+++..+.+.+||++|++.+.. ++..+++.+
T Consensus 33 ~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~--------------- 97 (195)
T 3cbq_A 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG--------------- 97 (195)
T ss_dssp TSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC---------------
T ss_pred CCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC---------------
Confidence 799999999998654433344444 445567778899999999999999987653 555555555
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++|+|||++++.||..+. .|+..+.... .+.|++||+||+|+.
T Consensus 98 ---------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 98 ---------------------------------DAFLIVFSVTDRRSFSKVP-ETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 9999999999999999998 8998888765 479999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.. +.++.+++..+++.+++ +++++||++|.||+++|+++++.+...+.
T Consensus 144 ~~------------~~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 144 RS------------REVSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TT------------CCSCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred cc------------CCcCHHHHHHHHHHhCC-EEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 64 56888899999999995 89999999999999999999999876443
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=185.89 Aligned_cols=152 Identities=28% Similarity=0.471 Sum_probs=135.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 78 (168)
T 1z2a_A 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA---------------- 78 (168)
T ss_dssp TSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCC----------------
Confidence 7999999999999999888889886544 56678888889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.++..+. .|+..+.....+.|+++|+||+|+...
T Consensus 79 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~piilv~nK~Dl~~~- 124 (168)
T 1z2a_A 79 --------------------------------QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD- 124 (168)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG-
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECcccCcc-
Confidence 9999999999999999998 899888877678999999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||++|.|++++|+++.+.+++
T Consensus 125 -----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 125 -----------SCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp -----------CSSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred -----------cccCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 45778889999999995 99999999999999999999998864
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-28 Score=193.57 Aligned_cols=153 Identities=24% Similarity=0.479 Sum_probs=135.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 36 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 99 (201)
T 2ew1_A 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA---------------- 99 (201)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC----------------
Confidence 7999999999999999888888886544 56778899999999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 100 --------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 100 --------------------------------NALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 9999988775 47899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++..+ .+++++||++|.||+++|.++++.+...
T Consensus 147 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 147 ------------REVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp ------------CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5578888999999999 4899999999999999999999988753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-28 Score=196.67 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=125.0
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++. .|...+.++..+.+.+.+.+++..+.+.+|||+|++. +..+.+.+++.+
T Consensus 47 ~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a-------------- 112 (211)
T 2g3y_A 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG-------------- 112 (211)
T ss_dssp TSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC--------------
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC--------------
Confidence 79999999999954 3454444433455667788899999999999999876 444556666766
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl 155 (228)
+++++|||++++.||+.+. .|...+... ..++|++|||||+||
T Consensus 113 ----------------------------------~~~ilVydvt~~~sf~~~~-~~~~~l~~~~~~~~~piilVgNK~DL 157 (211)
T 2g3y_A 113 ----------------------------------DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDL 157 (211)
T ss_dssp ----------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECTTC
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEChHH
Confidence 9999999999999999998 888777654 247999999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+. +.++.+++..++..+++ +|+|+||++|.||+++|+++++.+...+
T Consensus 158 ~~~------------r~v~~~e~~~~a~~~~~-~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 158 VRC------------REVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp GGG------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred hcC------------ceEeHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 764 56788888899999995 8999999999999999999999886543
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=203.69 Aligned_cols=167 Identities=93% Similarity=1.498 Sum_probs=150.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 165 ~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 227 (332)
T 2wkq_A 165 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT----------------- 227 (332)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTC-----------------
T ss_pred CCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCC-----------------
Confidence 799999999999999999999999988888888999999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....+++|+++|+||+|+.....
T Consensus 228 -------------------------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 276 (332)
T 2wkq_A 228 -------------------------------DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 276 (332)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc
Confidence 9999999999999999987679999988877899999999999987665
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++++.++.+
T Consensus 277 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred hhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence 5555555556789999999999999976999999999999999999999998764
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=188.45 Aligned_cols=153 Identities=25% Similarity=0.310 Sum_probs=118.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc--cccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--YDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++..+.+...+.+++..+.+.+||++|++. +..+...++..+
T Consensus 14 ~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~--------------- 78 (175)
T 2nzj_A 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG--------------- 78 (175)
T ss_dssp TSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC---------------
T ss_pred CccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC---------------
Confidence 799999999999988765544333344566778899999999999999987 344445555555
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.
T Consensus 79 ---------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 79 ---------------------------------SAYVIVYSIADRGSFESAS-ELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHCC----CCEEEEEECTTCT
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 9999999999999999998 8888887753 479999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+. +.++.+++..++..++ .+++++||++|.|++++|+++.+.+...
T Consensus 125 ~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 125 RC------------REVSVEEGRACAVVFD-CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TT------------CCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cc------------cccCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 64 4577888889999999 4999999999999999999999988653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=186.19 Aligned_cols=154 Identities=31% Similarity=0.505 Sum_probs=134.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 22 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 85 (181)
T 2efe_B 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA---------------- 85 (181)
T ss_dssp TSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886655 45677888889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 86 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 86 --------------------------------AAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 9999999999999999998 9999888775 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+....
T Consensus 133 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 133 ------------RKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred ------------ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4578888999999999 48999999999999999999999886543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=189.15 Aligned_cols=153 Identities=27% Similarity=0.507 Sum_probs=131.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 94 (191)
T 2a5j_A 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA---------------- 94 (191)
T ss_dssp TSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC----------------
Confidence 7999999999999999888888886655 45678889899999999999999988888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 95 --------------------------------d~ii~v~d~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 95 --------------------------------AGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 9999999999999999998 8999888764 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +++++||++|.||+++|+++++.+.+.
T Consensus 142 ------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 142 ------------RDVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55788889999999995 899999999999999999999988753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=189.86 Aligned_cols=155 Identities=27% Similarity=0.542 Sum_probs=137.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 26 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 89 (196)
T 3tkl_A 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 89 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC----------------
Confidence 7999999999999999888888886555 46778899999999999999999988888888777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 90 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 90 --------------------------------HGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999988775 47899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.+..+++..+++.+++ +++++||++|.||+++|.++.+.+....+
T Consensus 137 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 137 ------------KVVDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-CEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred ------------cccCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 56888889999999994 99999999999999999999999876544
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=193.32 Aligned_cols=155 Identities=28% Similarity=0.474 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 23 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 86 (223)
T 3cpj_B 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA---------------- 86 (223)
T ss_dssp TSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC----------------
Confidence 79999999999999998888888876554 5678889889999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 87 --------------------------------d~vilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 87 --------------------------------VGALIVYDISKSSSYENCN-HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp --------------------------------CEEEEEEC-CCHHHHHHHH-HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred --------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 9999999999999999998 8999988775 47899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.+++..+++.++ .+++++||++|.||+++|+++++.+.....
T Consensus 134 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 134 ------------RAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 5578888999999999 599999999999999999999999886443
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=189.17 Aligned_cols=154 Identities=25% Similarity=0.383 Sum_probs=132.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcC-eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.||++ +.+...+.+++ ..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~--------------- 80 (178)
T 2hxs_A 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGA--------------- 80 (178)
T ss_dssp TSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTC---------------
T ss_pred CCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhC---------------
Confidence 7999999999999998877888885 44456677776 678999999999999888888777777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCC-EEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTP-IILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~p-iilv~nK~D 154 (228)
|++++|||++++.+|..+. .|+..+.... ...| ++||+||+|
T Consensus 81 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 81 ---------------------------------QGVLLVYDITNYQSFENLE-DWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred ---------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 9999999999999999987 8988887753 2455 899999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+. +.++.+++..+++.+++ +++++||++|.||+++|+++.+.+....
T Consensus 127 l~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 127 LEHM------------RTIKPEKHLRFCQENGF-SSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp GGGG------------CSSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cccc------------cccCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9764 55788889999999994 8999999999999999999999987654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=183.99 Aligned_cols=151 Identities=26% Similarity=0.512 Sum_probs=132.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1r2q_A 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA---------------- 79 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC----------------
Confidence 7999999999999999888888886655 45677888889999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 80 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 80 --------------------------------QAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 9999999999999999998 8988888764 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+.
T Consensus 127 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 127 ------------RAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 4577888999999999 58999999999999999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=186.35 Aligned_cols=152 Identities=30% Similarity=0.545 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 88 (179)
T 1z0f_A 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 88 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC----------------
Confidence 7999999999999999888888887555 45677888899999999999998877777677766
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 89 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 89 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEeCcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999998 9998888765 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++++.+.+
T Consensus 136 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 136 ------------RDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 5578888999999999 499999999999999999999998864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-28 Score=188.61 Aligned_cols=152 Identities=29% Similarity=0.512 Sum_probs=135.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+...+.+|.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 90 (187)
T 2a9k_A 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 90 (187)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC-----------------
Confidence 799999999999999988899999888887888899999999999999988877776666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|+++|+||+|+...
T Consensus 91 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 91 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 9999999999999999998 88888887653 7999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +++++||+++.|++++|+++.+.+..
T Consensus 139 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 139 ------------RQVSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 45788889999999995 89999999999999999999998864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=186.56 Aligned_cols=152 Identities=30% Similarity=0.559 Sum_probs=135.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 95 (189)
T 2gf9_A 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA---------------- 95 (189)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC----------------
Confidence 79999999999999998888888876553 5667788889999999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 96 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 96 --------------------------------MGFLLMYDIANQESFAAVQ-DWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999988875 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++++.+.+
T Consensus 143 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 143 ------------RVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------------cCCCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778889999999994 99999999999999999999998754
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=188.54 Aligned_cols=151 Identities=29% Similarity=0.579 Sum_probs=135.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (206)
T 2bcg_Y 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS---------------- 81 (206)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCC----------------
Confidence 79999999999999998888898876554 5678899999999999999999999988888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... ...|++||+||+|+...
T Consensus 82 --------------------------------d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 82 --------------------------------HGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 8999988775 57899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.++ .+++++||++|.||+++|.++.+.+.
T Consensus 129 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 129 ------------RVVEYDVAKEFADANK-MPFLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4578888999999999 48999999999999999999998775
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=184.96 Aligned_cols=151 Identities=31% Similarity=0.549 Sum_probs=133.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~----------------- 75 (167)
T 1kao_A 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC-----------------
Confidence 799999999999999988889998887778888899999999999999988877766666666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 76 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 76 -------------------------------QGFILVYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 9999999999999999998 8887777654 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 124 ------------REVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp ------------CCSCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ------------ccCCHHHHHHHHHHhCC-CEEEecCCCCcCHHHHHHHHHHHHh
Confidence 45778888999999994 8999999999999999999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=181.73 Aligned_cols=151 Identities=25% Similarity=0.463 Sum_probs=133.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~---------------- 79 (170)
T 1z0j_A 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGS---------------- 79 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCC----------------
Confidence 7999999999999999888888887655 45677888889999999999998888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... +..|+++|+||+|+.+.
T Consensus 80 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 80 --------------------------------AAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 9999999999999999997 8999988774 57899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.++ .+++++||++|.|++++|+++.+.+.
T Consensus 127 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 127 ------------REVMERDAKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 4577888999999999 59999999999999999999998875
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=184.16 Aligned_cols=153 Identities=30% Similarity=0.558 Sum_probs=129.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 80 (177)
T 1wms_A 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS---------------- 80 (177)
T ss_dssp TSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC----------------
Confidence 7999999999999999888888886555 56778899999999999999999888888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|
T Consensus 81 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 81 --------------------------------DCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHccccccCCCcEEEEEECCc
Confidence 9999999999999999997 8988887653 4689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.. +.+..+++..+++..+..+++++||++|.|++++|+++++.+++.
T Consensus 128 l~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 128 ISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CSS-------------CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred ccc-------------cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 974 457788889998855446999999999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=192.32 Aligned_cols=152 Identities=29% Similarity=0.447 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++. ..++..++..+
T Consensus 38 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~----------------- 99 (196)
T 2atv_A 38 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG----------------- 99 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC-----------------
Confidence 799999999999999998999999888887788899999999999999987 44555555555
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 100 -------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 100 -------------------------------EGFVLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8888887653 47999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|. ||+++|+++++.+.+.
T Consensus 148 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 148 ------------RQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp ------------CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHhC-CeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 5588889999999999 499999999999 9999999999988753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=183.59 Aligned_cols=152 Identities=28% Similarity=0.581 Sum_probs=127.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~---------------- 76 (170)
T 1g16_A 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA---------------- 76 (170)
T ss_dssp TSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE----------------
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccC----------------
Confidence 7999999999999999888888887555 45677788889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~- 122 (170)
T 1g16_A 77 --------------------------------MGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET- 122 (170)
T ss_dssp --------------------------------EEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECccCCc-
Confidence 9999999999999999987 8998888775 5789999999999943
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.++.+.+.+.
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 123 ------------RVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ------------CccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45777889999999994 899999999999999999999988653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=186.07 Aligned_cols=153 Identities=27% Similarity=0.487 Sum_probs=135.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 20 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 83 (186)
T 2bme_A 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA---------------- 83 (186)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC----------------
Confidence 7999999999999999888888886554 56678889889999999999999888888788877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 84 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 84 --------------------------------AGALLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999998 8988887764 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++..++..+++.++ .+++++||++|.|++++|+++++.+...
T Consensus 131 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 131 ------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4578888999999999 5999999999999999999999988753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=183.01 Aligned_cols=154 Identities=27% Similarity=0.503 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~---------------- 76 (170)
T 1ek0_A 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNA---------------- 76 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccC----------------
Confidence 7999999999999999888888886655 46677888899999999999998887777777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 77 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 77 --------------------------------QAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred --------------------------------cEEEEEEecCChHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999999999998 8998888765 57999999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.
T Consensus 124 ~~---------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 124 GG---------ERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp SC---------CCCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred cc---------ccCCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 21 245778888999999994 8999999999999999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=185.74 Aligned_cols=152 Identities=32% Similarity=0.523 Sum_probs=126.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 93 (190)
T 3con_A 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 93 (190)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC-----------------
Confidence 799999999999999988888888887877888899999999999999999888888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+.... .+.|+++|+||+|+..
T Consensus 94 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~- 140 (190)
T 3con_A 94 -------------------------------EGFLCVFAINNSKSFADIN-LYREQIKRVKDSDDVPMVLVGNKCDLPT- 140 (190)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSC-
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCcCCc-
Confidence 9999999999999999997 8988888764 3799999999999976
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.
T Consensus 141 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 141 ------------RTVDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------ccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 24677888999999995 899999999999999999999988753
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=185.38 Aligned_cols=152 Identities=26% Similarity=0.441 Sum_probs=131.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+...+..++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 75 (172)
T 2erx_A 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG----------------- 75 (172)
T ss_dssp TSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccC-----------------
Confidence 799999999999999988888988877777778888889999999999988776666666655
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.+.. ++.|+++|+||+|+..
T Consensus 76 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 76 -------------------------------HAFILVYSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 9999999999999999887 7877777653 4789999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +.+...++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 124 ~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 124 S------------REVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp G------------CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred c------------cccCHHHHHHHHHHhC-CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 5 4577788889999999 489999999999999999999987654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=185.45 Aligned_cols=155 Identities=29% Similarity=0.543 Sum_probs=120.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--------------- 82 (182)
T 1ky3_A 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA--------------- 82 (182)
T ss_dssp TSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTC---------------
T ss_pred CCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcC---------------
Confidence 7999999999999999888888885444 4556666 5678999999999999998888888888
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~ 153 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+
T Consensus 83 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 83 ---------------------------------DCCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred ---------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 9999999999999999997 8988877653 478999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+.... +.++.+++..+++..+..+++++||++|.|++++|+++.+.+++.
T Consensus 129 Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 129 DAEESK-----------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TSCGGG-----------CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccc-----------ccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 996532 457788888998855446899999999999999999999988753
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=180.26 Aligned_cols=151 Identities=32% Similarity=0.535 Sum_probs=132.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+.++.++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 13 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~----------------- 75 (166)
T 2ce2_X 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 75 (166)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccC-----------------
Confidence 799999999999999988888988887777888899999999999999988777666666665
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC--CCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP--STPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~--~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.++..+. .|+..+..... +.|+++|+||+|+...
T Consensus 76 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 76 -------------------------------EGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 9999999999999999997 89888887653 7999999999999862
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+..+++..+++.+++ +++++||++|.|++++|.++.+.+.+
T Consensus 124 -------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 124 -------------TVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp -------------CSCHHHHHHHHHHHTC-CEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred -------------ccCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3667788899999994 89999999999999999999998754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=187.44 Aligned_cols=153 Identities=24% Similarity=0.434 Sum_probs=134.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+. ..+.+++..+.+.+||++|++.+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 96 (192)
T 2fg5_A 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS---------------- 96 (192)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC----------------
Confidence 79999999999999998888888876653 5567788889999999999999888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 97 --------------------------------d~iilV~d~~~~~s~~~~~-~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 97 --------------------------------AAAVIVYDITKQDSFYTLK-KWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp --------------------------------SEEEEEEETTCTHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 9999999999999999997 9999988876 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+...
T Consensus 144 ------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 144 ------------REVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp ------------CCSCHHHHHHHHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 4578888999999999 5899999999999999999999987643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=187.25 Aligned_cols=152 Identities=26% Similarity=0.540 Sum_probs=134.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (203)
T 1zbd_A 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGA---------------- 81 (203)
T ss_dssp TSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCC----------------
Confidence 7999999999999999888888886555 45677788899999999999999888888788777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 82 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 82 --------------------------------MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 9999999999999999998 8999988876 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++.+.+..
T Consensus 129 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 129 ------------RVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55788889999999995 99999999999999999999988764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=183.42 Aligned_cols=152 Identities=31% Similarity=0.509 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++. .+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 24 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~---------------- 87 (179)
T 2y8e_A 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS---------------- 87 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCC----------------
Confidence 79999999999999998888888864 4456778899889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 88 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 88 --------------------------------TVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 9999999999999999998 8988887654 47999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.|++++|+++.+.+..
T Consensus 135 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 135 ------------RQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp ------------CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ------------CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 4577888999999999 599999999999999999999987654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=184.61 Aligned_cols=153 Identities=27% Similarity=0.548 Sum_probs=134.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 88 (195)
T 1x3s_A 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA---------------- 88 (195)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886555 46678889999999999999999888887777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+.... .+.|++||+||+|+..
T Consensus 89 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 89 --------------------------------QGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 9999999999999999998 8999888765 4689999999999954
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..+++.++ .+++++||+++.|++++|+++.+.+....
T Consensus 136 -------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 136 -------------REVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp -------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred -------------cccCHHHHHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4577888999999999 48999999999999999999999987643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=187.56 Aligned_cols=153 Identities=30% Similarity=0.504 Sum_probs=132.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc--eeEEEcCe---------EEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGK---------PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|+++.+...+.+|++..+. ..+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------ 94 (195)
T 3bc1_A 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDA------ 94 (195)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTC------
T ss_pred CCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCC------
Confidence 79999999999999998888888866554 44555655 78999999999998887777777777
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++++|||++++.++..+. .|+..+.... .+.|++
T Consensus 95 ------------------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pii 131 (195)
T 3bc1_A 95 ------------------------------------------MGFLLLFDLTNEQSFLNVR-NWISQLQMHAYSENPDIV 131 (195)
T ss_dssp ------------------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSSSSSCCEE
T ss_pred ------------------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCCEE
Confidence 9999999999999999998 9999888765 479999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|+||+|+... +.+..+++..+++.+++ +++++||++|.|++++|+++.+.+.+.
T Consensus 132 lv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 132 LCGNKSDLEDQ------------RAVKEEEARELAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EEEECTTCGGG------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECcccccc------------cccCHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999764 45778889999999995 999999999999999999999988754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=192.63 Aligned_cols=154 Identities=27% Similarity=0.533 Sum_probs=136.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 96 (191)
T 3dz8_A 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA---------------- 96 (191)
T ss_dssp TSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC----------------
T ss_pred CcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC----------------
Confidence 7999999999999999888888886555 45667788889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|+.+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 97 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 97 --------------------------------MGFILMYDITNEESFNAVQ-DWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 9999999999999999998 8999998876 57999999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..+++.+++ +++++||++|.||+++|+++++.+.+..
T Consensus 144 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 144 ------------RVVPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 56888899999999995 9999999999999999999999887543
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=188.94 Aligned_cols=158 Identities=28% Similarity=0.428 Sum_probs=125.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 38 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~---------------- 101 (199)
T 2p5s_A 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA---------------- 101 (199)
T ss_dssp TSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC----------------
Confidence 7999999999999999888888887655 46678899999999999999988877766666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 102 --------------------------------d~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~NK~Dl~~~ 148 (199)
T 2p5s_A 102 --------------------------------DGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKADIRDT 148 (199)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHC---CCEEEEEECGGGHHH
T ss_pred --------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 9999999999999999998 8999888765 47999999999999743
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.. ....+.+..+++..+++.+++ +++++||++|.||+++|.++++.+.+
T Consensus 149 ~~------~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 149 AA------TEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HH------HTTCCCCCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cc------cccccccCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 11 011256888889999999995 99999999999999999999998864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-29 Score=202.75 Aligned_cols=165 Identities=95% Similarity=1.498 Sum_probs=142.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|+++.+...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 40 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 102 (204)
T 3th5_A 40 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 102 (204)
Confidence 799999999999999988899999888887788888889999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++++.+|..+.+.|+..+....++.|+++|+||+|+.....
T Consensus 103 -------------------------------d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~ 151 (204)
T 3th5_A 103 -------------------------------DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
Confidence 9999999999999999986578888887777899999999999987544
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+.......+.++.+++..+++.+++.+++++||++|.|++++|+++++.++
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 152 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 33333333345678888999999999668999999999999999999988653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=188.62 Aligned_cols=153 Identities=28% Similarity=0.510 Sum_probs=124.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 98 (200)
T 2o52_A 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA---------------- 98 (200)
T ss_dssp TSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC----------------
Confidence 7999999999999999888888886554 46677889889999999999999888888888877
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 99 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 99 --------------------------------AGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 9999999999999999998 8998887765 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++..++..+++..+ .+++++||++|.||+++|.++++.+...
T Consensus 146 ------------~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 146 ------------REVTFLEASRFAQENE-LMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5577888999999999 5999999999999999999999988753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=185.93 Aligned_cols=151 Identities=28% Similarity=0.486 Sum_probs=129.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccc-cCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+. .++..+++.+
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--------------- 94 (189)
T 1z06_A 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV--------------- 94 (189)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC---------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC---------------
Confidence 7999999999999999888888886554 4667888988999999999998887 6666667666
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+.
T Consensus 95 ---------------------------------d~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 95 ---------------------------------HAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ---------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999999998 8998888764 579999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC---CCHHHHHHHHHHHhc
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ---KGLKTVFDEAIRAVL 213 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~---~~v~~lf~~l~~~i~ 213 (228)
+. +.++.+++..+++.+++ +++++||++| .||+++|.++++.+.
T Consensus 141 ~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 141 SA------------IQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GG------------CCSCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cc------------ceeCHHHHHHHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 64 45788889999999995 8999999999 999999999988764
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=189.74 Aligned_cols=153 Identities=28% Similarity=0.502 Sum_probs=124.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 36 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~---------------- 99 (192)
T 2il1_A 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA---------------- 99 (192)
T ss_dssp TSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC----------------
T ss_pred CCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC----------------
Confidence 7999999999999999888888885444 56678889899999999999988877766666666
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 100 --------------------------------d~iilV~D~~~~~s~~~~~-~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 100 --------------------------------KGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999997 8998888775 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++..+++++||++|.||+++|+++++.+.+
T Consensus 147 ------------~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 147 ------------REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp ------------CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45778888899988633699999999999999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=190.34 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=101.0
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceee-eccceeEEEcCe--EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVF-DNYSANVMVDGK--PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+++|+++ .+...+.+|++ +.+...+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 30 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~------------ 97 (208)
T 2yc2_C 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV------------ 97 (208)
T ss_dssp -------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC------------
T ss_pred CCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC------------
Confidence 79999999999998 88888889986 555677788887 89999999999999888888888888
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC----CCCEEEEEe
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP----STPIILVGT 151 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~----~~piilv~n 151 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+|
T Consensus 98 ------------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~piilv~n 140 (208)
T 2yc2_C 98 ------------------------------------YYAILVFDVSSMESFESCK-AWFELLKSARPDRERPLRAVLVAN 140 (208)
T ss_dssp ------------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred ------------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhhcccccCCcEEEEEE
Confidence 9999999999999999998 99999988764 789999999
Q ss_pred CCCCCC-chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC-CCCHHHHHHHHHHHhcC
Q psy8274 152 KLDLRD-DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 152 K~Dl~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~-~~~v~~lf~~l~~~i~~ 214 (228)
|+|+.. . +.++.+++..+++.++ .+++++||++ |.|++++|+++++.+..
T Consensus 141 K~Dl~~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 141 KTDLPPQR------------HQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp CC-------------------CCCHHHHHHHHHHTT-CEEEECCC-------CHHHHHHHHHHHH
T ss_pred Ccccchhh------------ccCCHHHHHHHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 999986 4 4578889999999999 5999999999 99999999999998764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=183.77 Aligned_cols=152 Identities=26% Similarity=0.476 Sum_probs=133.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 98 (193)
T 2oil_A 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA---------------- 98 (193)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC----------------
Confidence 7999999999999999888888886555 45677788889999999999998888877777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 99 --------------------------------d~vi~v~D~~~~~s~~~~~-~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 99 --------------------------------VGALLVFDLTKHQTYAVVE-RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 9999999999999999988 8988887765 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.|++++|.++++.+.+
T Consensus 146 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 146 ------------REVPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45778889999999995 99999999999999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=184.41 Aligned_cols=153 Identities=27% Similarity=0.379 Sum_probs=121.3
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc-cccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED-YDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++. .|...+.++..+.+...+.+++..+.+.+||++|++. +..+++.+++.+
T Consensus 16 ~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~-------------- 81 (192)
T 2cjw_A 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG-------------- 81 (192)
T ss_dssp TSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC--------------
T ss_pred CCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC--------------
Confidence 79999999999953 3454444443455567788899999999999999876 444556666666
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDL 155 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl 155 (228)
|++++|||+++++||..+. .|...+.... .+.|+++|+||+|+
T Consensus 82 ----------------------------------~~~i~v~dv~~~~s~~~~~-~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 82 ----------------------------------DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp ----------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred ----------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCeEEEEEechhh
Confidence 9999999999999999997 8887777643 47899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
... +.+..+++..++..+++ +|+++||++|.||+++|+++++.+...
T Consensus 127 ~~~------------r~v~~~~~~~~a~~~~~-~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 127 VRX------------REVSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp GGG------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcc------------ccccHHHHHHHHHHhCC-ceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 754 56778888888888884 899999999999999999999988543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=188.78 Aligned_cols=152 Identities=25% Similarity=0.290 Sum_probs=126.6
Q ss_pred CCChhhhHHhhhhCCCCCCC-----------Cceeeecc-ceeE-EEcCeEEeeeeeeCCCCcccccCCCCccccccchh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-----------IPTVFDNY-SANV-MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSM 67 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~ 67 (228)
|||||||+ +++.+.+...+ .+|++..+ ...+ .+++..+.+.+|||+|++.+..++..+++.+
T Consensus 24 ~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---- 98 (198)
T 3t1o_A 24 LSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV---- 98 (198)
T ss_dssp TSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC----
T ss_pred CCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC----
Confidence 79999999 56666776553 45665444 3444 6678889999999999999998888888888
Q ss_pred HHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC------ChhhHHHHHHhhHHHHhhhC
Q psy8274 68 AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV------NPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt------~~~s~~~~~~~~~~~l~~~~ 141 (228)
|++|+|||++ +.++|..+. .|+..+....
T Consensus 99 --------------------------------------------d~~i~v~D~~~~~~~~~~~s~~~l~-~~l~~~~~~~ 133 (198)
T 3t1o_A 99 --------------------------------------------DGIVFVADSAPNRLRANAESMRNMR-ENLAEYGLTL 133 (198)
T ss_dssp --------------------------------------------CEEEEEEECCGGGHHHHHHHHHHHH-HHHHHTTCCT
T ss_pred --------------------------------------------CEEEEEEECCcchhhHhHHHHHHHH-HHHHhhcccc
Confidence 9999999999 667888887 8888886555
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.|++||+||+|+.+. ++.+++..+++.+++.+++++||++|.||+++|+++++.+....
T Consensus 134 ~~~piilv~NK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPDA--------------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TSSCEEEEEECTTSTTC--------------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcccc--------------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 78999999999999763 77788999999999659999999999999999999999887543
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=183.56 Aligned_cols=152 Identities=26% Similarity=0.509 Sum_probs=130.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+|++.. +...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 81 (207)
T 1vg8_A 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA---------------- 81 (207)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCC----------------
Confidence 799999999999999988888888544 456677788889999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++||+||+|
T Consensus 82 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (207)
T 1vg8_A 82 --------------------------------DCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKID 128 (207)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred --------------------------------cEEEEEEECCCHHHHHHHH-HHHHHHHHhcccccCCCCcEEEEEECCC
Confidence 9999999999999999997 8888877653 3689999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.. +.+..+++..+++.....+++++||++|.|++++|+++++.+..
T Consensus 129 l~~-------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 129 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp SSC-------------CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred Ccc-------------cccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 984 34677788888884433689999999999999999999988753
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=180.84 Aligned_cols=150 Identities=23% Similarity=0.412 Sum_probs=127.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeE-------------------------------------Eeee
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKP-------------------------------------INLG 42 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~-------------------------------------~~~~ 42 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++.. +.+.
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (208)
T 3clv_A 17 SVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFD 96 (208)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEE
T ss_pred CCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEE
Confidence 7999999999999999888888886544 3455656554 8899
Q ss_pred eeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC
Q psy8274 43 LWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122 (228)
Q Consensus 43 i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~ 122 (228)
+||++|++.+..++..++..+ |++++|||+++
T Consensus 97 i~Dt~G~~~~~~~~~~~~~~~------------------------------------------------d~~i~v~D~~~ 128 (208)
T 3clv_A 97 IWDTAGQERYASIVPLYYRGA------------------------------------------------TCAIVVFDISN 128 (208)
T ss_dssp EEECTTGGGCTTTHHHHHTTC------------------------------------------------SEEEEEEETTC
T ss_pred EEECCCcHHHHHHHHHHhcCC------------------------------------------------CEEEEEEECCC
Confidence 999999998888777777777 99999999999
Q ss_pred hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHH
Q psy8274 123 PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLK 202 (228)
Q Consensus 123 ~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~ 202 (228)
+.++..+. .|+..+..... .|+++|+||+|+ .. +.+..+++..+++.+++ +++++||++|.|++
T Consensus 129 ~~s~~~~~-~~~~~i~~~~~-~piilv~NK~D~-~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 192 (208)
T 3clv_A 129 SNTLDRAK-TWVNQLKISSN-YIIILVANKIDK-NK------------FQVDILEVQKYAQDNNL-LFIQTSAKTGTNIK 192 (208)
T ss_dssp HHHHHHHH-HHHHHHHHHSC-CEEEEEEECTTC-C-------------CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHH
T ss_pred HHHHHHHH-HHHHHHHhhCC-CcEEEEEECCCc-cc------------ccCCHHHHHHHHHHcCC-cEEEEecCCCCCHH
Confidence 99999988 89998887655 999999999993 32 55788899999999995 99999999999999
Q ss_pred HHHHHHHHHhcC
Q psy8274 203 TVFDEAIRAVLC 214 (228)
Q Consensus 203 ~lf~~l~~~i~~ 214 (228)
++|+++.+.+.+
T Consensus 193 ~l~~~l~~~~~~ 204 (208)
T 3clv_A 193 NIFYMLAEEIYK 204 (208)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-26 Score=182.75 Aligned_cols=151 Identities=28% Similarity=0.586 Sum_probs=133.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 93 (213)
T 3cph_A 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA---------------- 93 (213)
T ss_dssp TSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC----------------
Confidence 7999999999999999888888886555 45678889889999999999999988888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+..... +.|++||+||+|+..
T Consensus 94 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~- 139 (213)
T 3cph_A 94 --------------------------------MGIILVYDVTDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET- 139 (213)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHTTTCSEEEEEEECTTCSS-
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc-
Confidence 9999999999999999988 89988887754 689999999999953
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.+++ +++++||++|.||+++|.++.+.+..
T Consensus 140 ------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 140 ------------RVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45777888999999995 89999999999999999999988764
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-27 Score=188.00 Aligned_cols=152 Identities=31% Similarity=0.545 Sum_probs=131.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCe----------EEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK----------PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|+++.+...+.+|++..+ ...+.+++. .+.+.+||++|++.+..++..++..+
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~------ 108 (217)
T 2f7s_A 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA------ 108 (217)
T ss_dssp TSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC------
T ss_pred CCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCC------
Confidence 7999999999999999888888886655 456667766 78999999999988877777777777
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++|+|||++++.+|..+. .|+..+.... .+.|++
T Consensus 109 ------------------------------------------d~iilV~D~~~~~s~~~~~-~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 109 ------------------------------------------MGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIV 145 (217)
T ss_dssp ------------------------------------------CEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEE
T ss_pred ------------------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCcCCCCEE
Confidence 9999999999999999998 8988887665 579999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+||+|+... +.++.+++..+++.+++ +++++||++|.||+++|+++.+.+..
T Consensus 146 lV~NK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 146 LIGNKADLPDQ------------REVNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEECTTCGGG------------CCSCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEEECCccccc------------cccCHHHHHHHHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999764 45778889999999994 89999999999999999999998865
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-27 Score=190.86 Aligned_cols=152 Identities=28% Similarity=0.563 Sum_probs=125.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+
T Consensus 43 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 106 (199)
T 3l0i_B 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA---------------- 106 (199)
T ss_dssp TSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcC----------------
Confidence 7999999999999999888888886555 46678899999999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|++||+||+|+...
T Consensus 107 --------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 107 --------------------------------HGIIVVYDVTDQESFNNVK-QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp --------------------------------SEEEECC-CCCSHHHHHHH-HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 9999999999999999998 8999988775 47899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++ .+++++||++|.||+++|.++.+.+..
T Consensus 154 ------------~~v~~~~~~~~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 154 ------------KVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp ------------CCCCSCC-CHHHHTTT-CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred ------------ccCCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567777888999999 489999999999999999999887764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=184.11 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+.. .+.+|++..+. .+++..+.+.+|||+|++.+..++..+++.+
T Consensus 27 ~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 87 (199)
T 4bas_A 27 NSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGAKKFRGLWETYYDNI---------------- 87 (199)
T ss_dssp TSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCSGGGGGGGGGGCTTC----------------
T ss_pred CCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCCHhHHHHHHHHHhcC----------------
Confidence 799999999999999987 78888874333 2345568899999999999999998888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---------CCCCEEEEE
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---------PSTPIILVG 150 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---------~~~piilv~ 150 (228)
|++|+|||++++++|..+. .|+..+.... .+.|++||+
T Consensus 88 --------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~ 134 (199)
T 4bas_A 88 --------------------------------DAVIFVVDSSDHLRLCVVK-SEIQAMLKHEDIRRELPGGGRVPFLFFA 134 (199)
T ss_dssp --------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred --------------------------------CEEEEEEECCcHHHHHHHH-HHHHHHHhChhhhhcccccCCCCEEEEE
Confidence 9999999999999999998 7776665431 278999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHH-HHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGL-SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 218 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~ 218 (228)
||+|+.......+ +...... .+++..+ .+++++||++|.||+++|+++++.+.....+
T Consensus 135 NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 135 NKMDAAGAKTAAE---------LVEILDLTTLMGDHP-FVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp ECTTSTTCCCHHH---------HHHHHTHHHHHTTSC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred ECcCCCCCCCHHH---------HHHHhcchhhccCCe-eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 9999986522111 1111111 1224456 5899999999999999999999988765443
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=188.77 Aligned_cols=153 Identities=25% Similarity=0.469 Sum_probs=132.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 25 ~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 88 (221)
T 3gj0_A 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA---------------- 88 (221)
T ss_dssp TSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC----------------
Confidence 7999999999998888878888885444 55677888899999999999999998888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++.+|..+. .|+..+....++.|++||+||+|+.+..
T Consensus 89 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 89 --------------------------------QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSTTCCEEEEEECTTSSSCS
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHHhCCCCCEEEEEECCcccccc
Confidence 9999999999999999998 9999999988889999999999997641
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+. .++..+++.++ .+++++||++|.||+++|.++.+.+.....
T Consensus 136 -------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 136 -------------VK-AKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp -------------SC-GGGCCHHHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred -------------cc-HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 22 24567788888 499999999999999999999999876543
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=184.70 Aligned_cols=155 Identities=23% Similarity=0.345 Sum_probs=129.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEE-cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMV-DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+...+.+|.+..+. ..... ++..+.+.+||++|++.+..++..++..+
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--------------- 85 (218)
T 4djt_A 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA--------------- 85 (218)
T ss_dssp TSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC---------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC---------------
Confidence 79999999999999988777787755443 33333 34458899999999999988888888777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-CCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-STPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.++..+. .|+..+..... +.|++||+||+|+.+
T Consensus 86 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 86 ---------------------------------SGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131 (218)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC-
T ss_pred ---------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 9999999999999999998 99999887754 589999999999986
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. +.+..+++..+++.++ .+++++||++|.|++++|.++.+.+.....
T Consensus 132 ~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 132 R------------QKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp ---------------CCHHHHHHHTTTCC-CEEEEEBTTTTBTTTHHHHHHHHHHHCCTT
T ss_pred c------------cccCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 4 4577888888888888 489999999999999999999999887544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=179.66 Aligned_cols=145 Identities=17% Similarity=0.279 Sum_probs=110.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.||++.. ...+.+++ +.+.+|||+|++.++.++..+++.+
T Consensus 35 ~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 93 (198)
T 1f6b_A 35 NAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI----------------- 93 (198)
T ss_dssp TSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcC-----------------
Confidence 79999999999988874 567777654 35566777 7899999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+. ..+.|+++|+||+|+.+.
T Consensus 94 -------------------------------d~~i~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 141 (198)
T 1f6b_A 94 -------------------------------NGIVFLVDCADHERLLESK-EELDSLMTDETIANVPILILGNKIDRPEA 141 (198)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTSCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCcEEEEEECCCcccc
Confidence 9999999999999999998 787777654 257999999999999753
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh----------------CCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI----------------GAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++.+++..++... ...+++++||++|.||+++|+++.+.+
T Consensus 142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 142 --------------ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp --------------CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred --------------CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4455555554421 225899999999999999999998653
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=176.10 Aligned_cols=152 Identities=18% Similarity=0.274 Sum_probs=113.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+. .+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 26 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 84 (187)
T 1zj6_A 26 NAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT----------------- 84 (187)
T ss_dssp TSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 79999999999988887 667777632 34555555 7899999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 85 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 85 -------------------------------EFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp -------------------------------CEEEEEEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 9999999999999999998 788777665 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVP 220 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~ 220 (228)
...++..... +..+ .+++++||++|.|++++|+++++.+....+..+
T Consensus 133 --------------~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 133 --------------MTVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp --------------CCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred --------------CCHHHHHHHhChhhhcCCC-cEEEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 2222332222 1235 489999999999999999999999887666544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=174.57 Aligned_cols=143 Identities=19% Similarity=0.302 Sum_probs=115.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.+|++.. ...+.+++ +.+.+||++|++.+..++..+++.+
T Consensus 33 ~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 91 (190)
T 1m2o_B 33 NAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV----------------- 91 (190)
T ss_dssp TSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC-----------------
Confidence 79999999999998875 567777553 45566676 7889999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.+. ..+.|+++|+||+|+...
T Consensus 92 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 92 -------------------------------NGIVFLVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCChHHHHHHH-HHHHHHHcchhhcCCCEEEEEECCCCcCC
Confidence 9999999999999999998 787777653 257999999999999763
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH------------HhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK------------EIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++.+++..+.. ..+ .+++++||++|.||+++|+++.+.
T Consensus 140 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 140 --------------VSEAELRSALGLLNTTGSQRIEGQRP-VEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp --------------CCHHHHHHHTTCSSCCC---CCSSCC-EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred --------------CCHHHHHHHhCCccccccccccccce-EEEEEeECCcCCCHHHHHHHHHhh
Confidence 33333333322 133 589999999999999999999764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-25 Score=173.54 Aligned_cols=147 Identities=16% Similarity=0.215 Sum_probs=116.9
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++. +...+.+|++. ....+.+++ +.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 91 (190)
T 2h57_A 31 NSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG---------------- 91 (190)
T ss_dssp TSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC----------------
Confidence 799999999999887 66677787763 334455554 7899999999999988888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl 155 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+
T Consensus 92 --------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl 138 (190)
T 2h57_A 92 --------------------------------QAIIFVIDSSDRLRMVVAK-EELDTLLNHPDIKHRRIPILFFANKMDL 138 (190)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHSTTTTTSCCCEEEEEECTTS
T ss_pred --------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhccCCCeEEEEEeCcCc
Confidence 9999999999999999998 7777766543 47899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+. .+.++...+.. ..+ .+++++||++|.||+++|+++.+.+.+
T Consensus 139 ~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 139 RDA--------------VTSVKVSQLLCLENIKDKP-WHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTC--------------CCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred ccC--------------CCHHHHHHHhChhhccCCc-eEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 764 33344444442 124 589999999999999999999988754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=175.94 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=114.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+...+.+|++..+.. ++...+.+.+||++|++.+..++..++..+
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~----------------- 91 (188)
T 1zd9_A 32 YSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGV----------------- 91 (188)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccC-----------------
Confidence 799999999999999988888888766542 333457899999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|++||+||+|+...
T Consensus 92 -------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 92 -------------------------------SAIVYMVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999999999999999998 777666543 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+... .....++...+ .+++++||++|.||+++|+++.+.+...
T Consensus 140 ~~~~~~~~---------~~~~~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 140 LDEKELIE---------KMNLSAIQDRE-ICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CCHHHHHH---------HTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred CCHHHHHH---------HhChhhhccCC-eeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 21100000 00000111223 5799999999999999999999987654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=173.35 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=111.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|. .+.||++.. ... ++...+.+.+||++|++.+..++..++.++
T Consensus 10 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 68 (164)
T 1r8s_A 10 AAGKTTILYKLKLGEIV-TTIPTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 68 (164)
T ss_dssp TSSHHHHHHHHHHHCSS-CCCCCSSCC-EEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTC-----------------
T ss_pred CCCHHHHHHHHHcCCcC-cccCcCcee-EEE--EEECCEEEEEEEcCCChhhHHHHHHHhccC-----------------
Confidence 79999999999998886 456777622 222 333457899999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 69 -------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 69 -------------------------------QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 9999999999999999988 777776553 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
....+ +....+...++..+ .+++++||++|.|++++|+++.+.+.+
T Consensus 117 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 117 MNAAE---------ITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CCHHH---------HHHHTTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CCHHH---------HHHHhCcccccCcc-EEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 21000 11011111112234 479999999999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-25 Score=174.85 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=117.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeE--EE-cCeEEeeeeeeCCCCcccccCC---CCccccccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANV--MV-DGKPINLGLWDTAGQEDYDRLR---PLSYPQTGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~--~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~~~~~~~~~~~~ 73 (228)
|||||||++++.+ .+... ++++..+ ...+ .+ ++..+.+.+||++|++.+.... ..+++++
T Consensus 30 ~vGKTsLi~~l~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~---------- 96 (196)
T 3llu_A 30 RSGKSSIQKVVFH-KMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT---------- 96 (196)
T ss_dssp TSSHHHHHHHHHS-CCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC----------
T ss_pred CCCHHHHHHHHHh-cCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC----------
Confidence 7999999997665 44433 4443322 2222 33 3677899999999999987665 6777777
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh--hhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP--ASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~--~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
|++|+|||++++ +++..+. .|+..+....++.|++||||
T Consensus 97 --------------------------------------~~~i~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~piilv~n 137 (196)
T 3llu_A 97 --------------------------------------GALIYVIDAQDDYMEALTRLH-ITVSKAYKVNPDMNFEVFIH 137 (196)
T ss_dssp --------------------------------------SEEEEEEETTSCCHHHHHHHH-HHHHHHHHHCTTCEEEEEEE
T ss_pred --------------------------------------CEEEEEEECCCchHHHHHHHH-HHHHHHHhcCCCCcEEEEEe
Confidence 999999999997 6777776 77777766677899999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHH----HhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAK----EIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+.......+. .+.+...++..+++ .++ .+|+++||++ .||+++|..+++.++
T Consensus 138 K~Dl~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 138 KVDGLSDDHKIET-----QRDIHQRANDDLADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CGGGSCHHHHHHH-----HHHHHHHHHHHHHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred ccccCchhhhhHH-----HhHHHHHHHHHHHHhhhhcCC-cceEEEEech-hhHHHHHHHHHHHhC
Confidence 9999874321111 14577777888888 667 5899999999 999999999998764
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-25 Score=170.15 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=115.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++.. ...+.++ .+.+.+||++|++.+..++..++..+
T Consensus 17 ~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 75 (171)
T 1upt_A 17 GAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNT----------------- 75 (171)
T ss_dssp TSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccC-----------------
Confidence 79999999999998885 466776532 2344555 47889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 76 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 76 -------------------------------DAVIYVVDSCDRDRIGISK-SELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp -------------------------------SEEEEEEETTCCTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 9999999999999999987 6666655432 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ +....+..+++..+ .+++++||++|.|++++|+++.+.+.++
T Consensus 124 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 124 MTSSE---------MANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp CCHHH---------HHHHHTGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHH---------HHHHhCchhccCCc-eEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 21100 11111112223345 4899999999999999999999988754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=169.65 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++. ...+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 86 (186)
T 1ksh_A 28 NAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFEST----------------- 86 (186)
T ss_dssp TSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCC-----------------
Confidence 799999999999888 66778887633 33445554 7889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 87 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 87 -------------------------------DGLIWVVDSADRQRMQDCQ-RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 9999999999999999988 777666554 257999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .++..... +..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 135 ~~--------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 135 LS--------------CNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CC--------------HHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CC--------------HHHHHHHhChhhccCCc-eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 21 12222111 1234 5899999999999999999999988653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=171.50 Aligned_cols=143 Identities=19% Similarity=0.289 Sum_probs=112.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+ ..+.+|++..+ ..+.+++ +.+.+||++|++.+..++..++..+
T Consensus 31 ~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 89 (181)
T 2h17_A 31 NAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNT----------------- 89 (181)
T ss_dssp TSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTC-----------------
T ss_pred CCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999999988 56667776433 4455555 7899999999999998888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 90 -------------------------------d~ii~v~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 90 -------------------------------EFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp -------------------------------CEEEEEEETTCTTTHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 9999999999999999998 777666654 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHH-----HHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMA-----KEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. ..++..... +..+ .+++++||++|.||+++|+++++.
T Consensus 138 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 138 M--------------TVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp C--------------CHHHHHHHTTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHTC
T ss_pred C--------------CHHHHHHHhCcccccCCc-eEEEEccCCCCcCHHHHHHHHHhh
Confidence 1 122222221 2234 489999999999999999999764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=177.64 Aligned_cols=159 Identities=23% Similarity=0.327 Sum_probs=113.8
Q ss_pred CCChhhhHHhhhhC--CCCCCCCceeeecc-ceeEEE---cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNY-SANVMV---DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||+++|++. .+.+.+.+|++..+ ...+.+ ++..+.+.+||++|++.+..+++.++.++
T Consensus 12 gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~----------- 80 (184)
T 2zej_A 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR----------- 80 (184)
T ss_dssp TSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS-----------
T ss_pred CCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC-----------
Confidence 79999999999984 67777888886544 333333 34578899999999999888887777776
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCCCCCEEEEEeCC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCPSTPIILVGTKL 153 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~~~piilv~nK~ 153 (228)
+++++|||++++ .+|..+. .|+..+....++.|++|||||+
T Consensus 81 -------------------------------------~~~i~v~d~~~~~~s~~~~~-~~~~~~~~~~~~~piilv~nK~ 122 (184)
T 2zej_A 81 -------------------------------------ALYLAVYDLSKGQAEVDAMK-PWLFNIKARASSSPVILVGTHL 122 (184)
T ss_dssp -------------------------------------EEEEEEEEGGGCHHHHHTHH-HHHHHHHHHCTTCEEEEEEECG
T ss_pred -------------------------------------cEEEEEEeCCcchhHHHHHH-HHHHHHHhhCCCCcEEEEEECC
Confidence 999999999997 5898887 9999888776789999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc---eEEEecccCCC-CHHHHHHHHHHHhcCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV---KYLECSALTQK-GLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~evSa~~~~-~v~~lf~~l~~~i~~~~~ 217 (228)
|+.+.....+ +..+.+..+++.+++. +++++||++|. +++++++.+.+.+...+.
T Consensus 123 Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 123 DVSDEKQRKA---------CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp GGCCHHHHHH---------HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred CcccchhhHH---------HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 9986532111 1134456677677753 39999999997 999999999998876543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=171.75 Aligned_cols=147 Identities=21% Similarity=0.290 Sum_probs=109.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+ ..+.||++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 26 ~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~----------------- 84 (181)
T 1fzq_A 26 NAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENT----------------- 84 (181)
T ss_dssp TSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCC-----------------
Confidence 7999999999998865 3456666532 33455554 7889999999998887777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+... ..+.|+++|+||+|+.+.
T Consensus 85 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 85 -------------------------------DILIYVIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 9999999999999999987 777665443 257899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.. .++.... +...+ .+++++||++|.||+++|+++++.+.+.
T Consensus 133 ~~--------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 133 AP--------------ASEIAEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp CC--------------HHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred CC--------------HHHHHHHhCchhccCCc-eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 21 1111111 11224 4799999999999999999999987643
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=180.72 Aligned_cols=170 Identities=19% Similarity=0.265 Sum_probs=114.5
Q ss_pred CCChhhhHHhhhh---CCCCCCCCcee-eeccc-eeEE--------------EcCeEEeeeeee----------------
Q psy8274 1 AVGKTCLLISYTT---NAFPGEYIPTV-FDNYS-ANVM--------------VDGKPINLGLWD---------------- 45 (228)
Q Consensus 1 gvGKTsli~~~~~---~~~~~~~~~t~-~~~~~-~~~~--------------~~~~~~~~~i~D---------------- 45 (228)
|||||||+++|++ +.|...+.+|+ +..+. +.+. +++..+.+++||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 7999999999998 67777888886 44332 2222 567889999999
Q ss_pred -------CCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 46 -------TAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 46 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
++|++.+..++..++... .+.+++..|.....+ ....++|++|+||
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~--------~~~~~ad~vilV~ 170 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCT-------------------DQLGLEQDFEQKQMP--------DGKLLVDGFLLGI 170 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCG-------------------GGTTCGGGSCCCBCG--------GGEEECCEEEEEE
T ss_pred ccccccccchhhhhhhhhhhhhhcc-------------------ccccccccccccccc--------cccccCCEEEEEE
Confidence 667777777777666510 111111110000000 0001239999999
Q ss_pred ecCCh--hhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceEEEe
Q psy8274 119 SLVNP--ASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKYLEC 193 (228)
Q Consensus 119 Dvt~~--~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ev 193 (228)
|++++ +||..+. .|+..+... ..++|++||+||+|+.... .+ +++..+++.. + .+++++
T Consensus 171 D~t~~~~~s~~~~~-~~l~~i~~~~~~~~~piilV~NK~Dl~~~~------------~v--~~~~~~~~~~~~-~~~~e~ 234 (255)
T 3c5h_A 171 DVSRGMNRNFDDQL-KFVSNLYNQLAKTKKPIVVVLTKCDEGVER------------YI--RDAHTFALSKKN-LQVVET 234 (255)
T ss_dssp ECBC----CHHHHH-HHHHHHHHHHHHTTCCEEEEEECGGGBCHH------------HH--HHHHHHHHTSSS-CCEEEC
T ss_pred ECCCCchhhHHHHH-HHHHHHHHHhccCCCCEEEEEEcccccccH------------HH--HHHHHHHHhcCC-CeEEEE
Confidence 99998 9999998 899888765 2579999999999997642 23 4677777764 6 589999
Q ss_pred cccCCCCHHHHHHHHHHHhc
Q psy8274 194 SALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 194 Sa~~~~~v~~lf~~l~~~i~ 213 (228)
||++|.||+++|+++++.+.
T Consensus 235 SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 235 SARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 99999999999999998764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-25 Score=175.23 Aligned_cols=151 Identities=18% Similarity=0.178 Sum_probs=106.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.+. .+.||++.. ...+..+ .+.+.+||++|++.+..++..++..+
T Consensus 39 ~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 97 (192)
T 2b6h_A 39 AAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNT----------------- 97 (192)
T ss_dssp TSSHHHHHHHHCSSCCE-EEEEETTEE-EEEEEET--TEEEEEEECC-----CTTHHHHHHTC-----------------
T ss_pred CCCHHHHHHHHHhCCcc-ccCCcCcee-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 79999999999998886 456666522 2233433 47899999999998888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|++||+||+|+.+.
T Consensus 98 -------------------------------d~iilv~D~~~~~s~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 98 -------------------------------QGLIFVVDSNDRERVQESA-DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999999998 7777765532 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+..+ +....+..+++..+ .+++++||++|.||+++|+++++.+.+
T Consensus 146 ~~~~~---------i~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 146 MPVSE---------LTDKLGLQHLRSRT-WYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp CCHHH---------HHHHTTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred CCHHH---------HHHHhCcccccCCc-eEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 21000 11011111111233 479999999999999999999998754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=166.38 Aligned_cols=152 Identities=30% Similarity=0.524 Sum_probs=128.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.||++..+ ...+.++|..+.+.+||++|++.+..++..++..+
T Consensus 15 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 78 (199)
T 2f9l_A 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGA---------------- 78 (199)
T ss_dssp TSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcC----------------
Confidence 7999999999999999888888885444 56788899999999999999998887777777776
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 79 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 79 --------------------------------VGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 9999999999999999887 8888777654 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..++...++ .++++||+++.|++++|+++.+.+..
T Consensus 126 ------------~~~~~~~a~~l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 126 ------------RAVPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cCcCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45677788999999994 89999999999999999999988754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=169.79 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=114.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. .+.||++.. ...+..+ .+.+.+|||+|++.+..++..++..+
T Consensus 32 ~~GKssli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~----------------- 90 (189)
T 2x77_A 32 NAGKTSILYRLHLGDVV-TTVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDT----------------- 90 (189)
T ss_dssp TSSHHHHHHHTCCSCCE-EECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCC-CcCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcC-----------------
Confidence 79999999999988875 356666522 2344444 37889999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++++|..+. .|+..+.... .+.|+++|+||+|+...
T Consensus 91 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 91 -------------------------------DAVIYVVDSTDRDRMGVAK-HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp -------------------------------CEEEEEEETTCCTTHHHHH-HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEeCCCHHHHHHHH-HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 9999999999999999987 6766665442 47999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+..+ +....+...++..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus 139 ~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 139 ASEAE---------IAEQLGVSSIMNRT-WTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCHHH---------HHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCHHH---------HHHHhChhhccCCc-eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 21100 11111111122334 4799999999999999999999988654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=166.46 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=110.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+ ..+.+|++.. ...+.+++ +.+.+||++|++.+..++..++..+
T Consensus 28 ~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~----------------- 86 (183)
T 1moz_A 28 GAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADT----------------- 86 (183)
T ss_dssp TSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTE-----------------
T ss_pred CCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999998877 4666776532 33445554 7889999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.+|..+. .|+..+... ..+.|+++|+||+|+...
T Consensus 87 -------------------------------d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 87 -------------------------------AAVIFVVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp -------------------------------EEEEEEEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCCHHHHHHHH-HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 9999999999999999998 777777665 357999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHH-----HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAK-----EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++...... ..+ .+++++||++|.|++++|+++.+.+.+
T Consensus 135 ~--------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 135 L--------------SASEVSKELNLVELKDRS-WSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp C--------------CHHHHHHHTTTTTCCSSC-EEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred C--------------CHHHHHHHhCcccccCCc-eEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 1 2222222211 123 479999999999999999999998753
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=163.08 Aligned_cols=151 Identities=30% Similarity=0.525 Sum_probs=130.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++..+
T Consensus 39 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~---------------- 102 (191)
T 1oix_A 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA---------------- 102 (191)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC----------------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC----------------
Confidence 7999999999999999888889986555 57788899999999999999998888877777776
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++..+|..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 103 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 103 --------------------------------VGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEECcCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 9999999999999999887 7888776654 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+...++..++...++ .++++||+++.|++++|+.+.+.++
T Consensus 150 ------------~~~~~~~a~~l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i~ 191 (191)
T 1oix_A 150 ------------RAVPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILTEIY 191 (191)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 44667788999999994 8999999999999999999988763
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=186.06 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=116.2
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc---CCCCccccccchhHHhhcch
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR---LRPLSYPQTGLSMAKEIGAV 74 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~ 74 (228)
|||||||++++..+.+.. .+.||++..+.. ++ ..+.+++|||+||++|.. .++.+|+++
T Consensus 9 gvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a----------- 73 (331)
T 3r7w_B 9 RCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSV----------- 73 (331)
T ss_dssp TSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTC-----------
T ss_pred CCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCC-----------
Confidence 799999999887664433 256777665542 33 458999999999999963 357788888
Q ss_pred hhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh--hhHHHHHHhhHHHHhhhCCCCCEEEEEeC
Q psy8274 75 KYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP--ASFENVRAKWYPEVRHHCPSTPIILVGTK 152 (228)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~--~s~~~~~~~~~~~l~~~~~~~piilv~nK 152 (228)
+++|+|||++++ +++..+. .|+..+.+..+++|++|||||
T Consensus 74 -------------------------------------~~~IlV~Ditd~~~~~~~~l~-~~l~~~~~~~~~ipillvgNK 115 (331)
T 3r7w_B 74 -------------------------------------GALVYVIDSQDEYINAITNLA-MIIEYAYKVNPSINIEVLIHK 115 (331)
T ss_dssp -------------------------------------SEEEEECCCSSCTTHHHHHHH-HHHHHHHHHCTTCEEEEECCC
T ss_pred -------------------------------------CEEEEEEECCchHHHHHHHHH-HHHHHHhhcCCCCcEEEEEEC
Confidence 999999999998 3333333 445555566778999999999
Q ss_pred CCCCCchHHHHHHhhccCccccHHHHHHHHHH----hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 153 LDLRDDKETIEKLKEKKLAPITYPQGLSMAKE----IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 153 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+|+.......+. .|.+..+++..+++. ++ .+|+|+||++ ++|.++|..+++.++..
T Consensus 116 ~DL~~~~~R~~~-----~R~V~~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 116 VDGLSEDFKVDA-----QRDIMQRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSCSHHHHHH-----HHHHHHHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred cccCchhhhhhH-----HHHhhHHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 999865321110 145777888888886 67 5899999998 69999999999988743
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=157.03 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=107.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+...+.+++...+ ...+.+++. .+.+|||+|++.+..++..++..+
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~---------------- 79 (178)
T 2lkc_A 18 DHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVT---------------- 79 (178)
T ss_dssp TTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCC----------------
T ss_pred CCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhC----------------
Confidence 7999999999999998877777664433 455677775 567999999999998888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|||++++...... .++..+.. .+.|+++|+||+|+....
T Consensus 80 --------------------------------d~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~ 123 (178)
T 2lkc_A 80 --------------------------------DIVILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN 123 (178)
T ss_dssp --------------------------------CEEEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC
T ss_pred --------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC
Confidence 999999999984333222 12223332 378999999999998631
Q ss_pred HHHHHHhhccCccccHHHHHHHHH-------HhC-CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAK-------EIG-AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~-------~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
. ++.....+ .++ ..+++++||++|.|++++|+++++.+...+.
T Consensus 124 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 124 P---------------DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp H---------------HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred H---------------HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 1 11111111 122 1489999999999999999999998765443
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-23 Score=167.38 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=108.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCe-EEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.++..+.+. +.+++. .+.+.+|||+|++.+.. ++..+++.+
T Consensus 17 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~--------------- 79 (214)
T 2fh5_B 17 DSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA--------------- 79 (214)
T ss_dssp TSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE---------------
T ss_pred CCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC---------------
Confidence 79999999999999998887766544333 555544 58899999999998876 666667777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh-hHHHHHHhhHHHHhhh---CCCCCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHH---CPSTPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~---~~~~piilv~nK~D 154 (228)
|++++|||+++.. ++....+.|...+... ..+.|++||+||+|
T Consensus 80 ---------------------------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (214)
T 2fh5_B 80 ---------------------------------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126 (214)
T ss_dssp ---------------------------------EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTT
T ss_pred ---------------------------------CEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCC
Confidence 9999999999854 5666664555555542 34689999999999
Q ss_pred CCCchHHHHH---Hh-------hccCccccHHH------------HHHHHHHhC--CceEEEecccCC------CCHHHH
Q psy8274 155 LRDDKETIEK---LK-------EKKLAPITYPQ------------GLSMAKEIG--AVKYLECSALTQ------KGLKTV 204 (228)
Q Consensus 155 l~~~~~~~~~---~~-------~~~~~~v~~~~------------~~~~~~~~~--~~~~~evSa~~~------~~v~~l 204 (228)
+.......+. .. ......++..+ +..|+.... ..+|+|+||++| .||+++
T Consensus 127 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~l 206 (214)
T 2fh5_B 127 IAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDL 206 (214)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHH
Confidence 9764321110 00 00111122222 222222221 368999999999 999999
Q ss_pred HHHHHHHh
Q psy8274 205 FDEAIRAV 212 (228)
Q Consensus 205 f~~l~~~i 212 (228)
|+++.+.+
T Consensus 207 f~~l~~~~ 214 (214)
T 2fh5_B 207 EKWLAKIA 214 (214)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998753
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-23 Score=176.04 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=119.6
Q ss_pred CCChhhhHHhhhhC--CCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-----ccCCCCccccccchhHHhhc
Q psy8274 1 AVGKTCLLISYTTN--AFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----DRLRPLSYPQTGLSMAKEIG 72 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~~~~~~~ 72 (228)
|||||||+++|+++ .+. ..+.+|++..+. .+.+++ .+.+.+||++|++.+ ..++..+++++
T Consensus 13 ~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a--------- 81 (307)
T 3r7w_A 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV--------- 81 (307)
T ss_dssp TSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC---------
T ss_pred CCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC---------
Confidence 79999999999987 333 245566655443 334444 588999999999987 56666666666
Q ss_pred chhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhH---HHHhhhCCCCCEEEE
Q psy8274 73 AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWY---PEVRHHCPSTPIILV 149 (228)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~---~~l~~~~~~~piilv 149 (228)
|++++|||++++++|..+. .|. ..+....+++|++||
T Consensus 82 ---------------------------------------d~vi~V~D~t~~~s~~~l~-~~~~~l~~l~~~~~~~piilv 121 (307)
T 3r7w_A 82 ---------------------------------------QVLIHVFDVESTEVLKDIE-IFAKALKQLRKYSPDAKIFVL 121 (307)
T ss_dssp ---------------------------------------SEEEEEEETTCSCHHHHHH-HHHHHHHHHHHHCTTCEEEEE
T ss_pred ---------------------------------------CEEEEEEECCChhhHHHHH-HHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999999999986 564 444555678999999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+||+|+.......+. ..+..+++..+++.+|+ .+++++||++ .++.++|..++..++.
T Consensus 122 ~NK~Dl~~~~~r~~~------~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 122 LHKMDLVQLDKREEL------FQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECGGGSCHHHHHHH------HHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EecccccchhhhhHH------HHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcC
Confidence 999999874321110 11566788999999984 6999999999 8999999999987764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-23 Score=181.29 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=105.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+... .||++..+. .++...+.+.+|||+|++.+..++..++..+
T Consensus 175 ~vGKSsLl~~l~~~~~~~~-~pT~~~~~~---~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----------------- 233 (329)
T 3o47_A 175 AAGKTTILYKLKLGEIVTT-IPTIGFNVE---TVEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 233 (329)
T ss_dssp TSSHHHHHHHTCSSCCEEE-EEETTEEEE---EEEETTEEEEEEECC-----CCSHHHHHTTE-----------------
T ss_pred CccHHHHHHHHhCCCCCCc-ccccceEEE---EEecCcEEEEEEECCCCHhHHHHHHHHhccC-----------------
Confidence 7999999999999887644 355543332 2333447899999999999998888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHH-hhhC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEV-RHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l-~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.+|..+. .|+..+ .... .++|++||+||+|+.+.
T Consensus 234 -------------------------------d~vilV~D~~~~~s~~~~~-~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 234 -------------------------------QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp -------------------------------EEEEEEEETTCSSSHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------CEEEEEEECCchHHHHHHH-HHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 9999999999999999998 555444 3332 57999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
....+ +....+...++..+ .+++++||++|.||+++|+++++.+.+.
T Consensus 282 ~~~~~---------i~~~~~~~~~~~~~-~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 282 MNAAE---------ITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp CCHHH---------HHHHHTCTTCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred cCHHH---------HHHHhchhhhhcCC-CEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 21111 00011111111223 4799999999999999999999988753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=156.54 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.|++. +.....+.+++ ..+.+|||+|++.+...+. .+.+.......
T Consensus 13 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~------~~~~~~~~~~~----- 79 (165)
T 2wji_A 13 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSI------DEIIARDYIIN----- 79 (165)
T ss_dssp TSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSH------HHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcch------hHHHHHHHHhc-----
Confidence 7999999999998776544445442 33344555665 5789999999987643210 01111110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..++++++|||+++.+++ . .|+..+.+. +.|+++|+||+|+...
T Consensus 80 -----------------------------~~~~~~i~v~D~~~~~~~---~-~~~~~~~~~--~~p~ilv~nK~Dl~~~- 123 (165)
T 2wji_A 80 -----------------------------EKPDLVVNIVDATALERN---L-YLTLQLMEM--GANLLLALNKMDLAKS- 123 (165)
T ss_dssp -----------------------------HCCSEEEEEEETTCHHHH---H-HHHHHHHHT--TCCEEEEEECHHHHHH-
T ss_pred -----------------------------CCCCEEEEEecCCchhHh---H-HHHHHHHhc--CCCEEEEEEchHhccc-
Confidence 011999999999986543 3 566666553 7999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+.++. ++..+++.++ .+++++||++|.||+++|+++.+.+
T Consensus 124 -----------~~~~~-~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 124 -----------LGIEI-DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp -----------TTCCC-CHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred -----------cChhh-HHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 22332 4677888889 4899999999999999999998875
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=157.18 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=105.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCccc-----------ccCCCCcccc-ccchhH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDY-----------DRLRPLSYPQ-TGLSMA 68 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~~~~~~-~~~~~~ 68 (228)
|||||||+++|+++.+...+.|++... ...+.++ .+.+||++|.... ..++..+++. +
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 80 (190)
T 2cxx_A 11 NVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA----- 80 (190)
T ss_dssp TSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG-----
T ss_pred CCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhh-----
Confidence 799999999999998877766655321 2223333 6899999995432 2121112211 1
Q ss_pred HhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHH--------Hhh-
Q psy8274 69 KEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPE--------VRH- 139 (228)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~--------l~~- 139 (228)
+++++||+++|..+|..+.+.|... +..
T Consensus 81 -------------------------------------------~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 117 (190)
T 2cxx_A 81 -------------------------------------------KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 117 (190)
T ss_dssp -------------------------------------------GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred -------------------------------------------ccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHH
Confidence 8888889999999998875477653 211
Q ss_pred h-CCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc------eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 140 H-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV------KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 140 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
. ..+.|+++|+||+|+.... .+++..+++.+++. +++++||++|.|++++|+++++.+
T Consensus 118 ~~~~~~piilv~nK~Dl~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 118 LRELDIPTIVAVNKLDKIKNV---------------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHTTCCEEEEEECGGGCSCH---------------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhcCCceEEEeehHhccCcH---------------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 1 2479999999999998741 34567788888852 479999999999999999999988
Q ss_pred cCCCC
Q psy8274 213 LCPVP 217 (228)
Q Consensus 213 ~~~~~ 217 (228)
...+.
T Consensus 183 ~~~~~ 187 (190)
T 2cxx_A 183 RERQG 187 (190)
T ss_dssp HHC--
T ss_pred chhhc
Confidence 76543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=150.41 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=94.9
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccC-------CCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRL-------RPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~~~~~~~~ 71 (228)
|||||||+++|.++.+. ..+.++..+.+...+..++. .+.+||++|+..+... +..++..
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--------- 79 (161)
T 2dyk_A 11 NVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED--------- 79 (161)
T ss_dssp TSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT---------
T ss_pred CCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh---------
Confidence 79999999999988753 33333334444555666664 6789999998764321 1111222
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
+|++++|||++++.+.... .+...+.. .+.|+++|+|
T Consensus 80 ---------------------------------------~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~n 116 (161)
T 2dyk_A 80 ---------------------------------------AEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVAT 116 (161)
T ss_dssp ---------------------------------------CSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEE
T ss_pred ---------------------------------------CCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEE
Confidence 2999999999987555432 33444444 3689999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|+|+.+.. +++..++ .+++.+++++||++|.|++++|+++++.+
T Consensus 117 K~Dl~~~~----------------~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 117 KVDDPKHE----------------LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp CCCSGGGG----------------GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred Ccccccch----------------HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 99998642 1223344 56755899999999999999999998865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=157.78 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+.....+ +..+........++ ..+.+|||+|+.......... +. ..++.
T Consensus 39 ~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~-------~~--~~~~~---- 103 (228)
T 2qu8_A 39 NVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNT-------IE--MTTIT---- 103 (228)
T ss_dssp TSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCH-------HH--HHHHH----
T ss_pred CCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhh-------HH--HHHHH----
Confidence 7999999999999877422211 11111122223333 678999999985421100000 00 00000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHH-HhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVR-AKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~-~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.. ...+|++++|||++++.+|.... ..|+..+....++.|+++|+||+|+...
T Consensus 104 -----------------~~---------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 104 -----------------AL---------AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp -----------------HH---------HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred -----------------Hh---------hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 00 01129999999999998875221 1566666665568999999999999864
Q ss_pred hHHHHHHhhccCccccHH---HHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYP---QGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~---~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .+..+ .+..++...+ ..+++++||++|.||+++|+++++.+...
T Consensus 158 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 158 D------------SLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp -------------CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred h------------hhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 2 24333 4556666665 24899999999999999999999988643
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=179.31 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=110.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-------E--EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-------V--MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-------~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|||||||+++|+++.|...+.+|++..+... + ..++..+.+.+||++|++.+..+...+++.+
T Consensus 51 ~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~-------- 122 (535)
T 3dpu_A 51 MAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRS-------- 122 (535)
T ss_dssp CSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSS--------
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCC--------
Confidence 7999999999999999888889887665422 1 2234468899999999999888877777776
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
|++++|||+++.+. +. .|+..+..+.++.|++||+|
T Consensus 123 ----------------------------------------d~ii~V~D~s~~~~---~~-~~~~~l~~~~~~~pvilV~N 158 (535)
T 3dpu_A 123 ----------------------------------------SVYMLLLDSRTDSN---KH-YWLRHIEKYGGKSPVIVVMN 158 (535)
T ss_dssp ----------------------------------------EEEEEEECGGGGGG---HH-HHHHHHHHHSSSCCEEEEEC
T ss_pred ----------------------------------------cEEEEEEeCCCchh---HH-HHHHHHHHhCCCCCEEEEEE
Confidence 99999999987644 34 78888888877899999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+|+... +.+..+++..++..+++ +++++||++|.||+++|..+.+.+....
T Consensus 159 K~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 159 KIDENPS------------YNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp CTTTCTT------------CCCCHHHHHHHCGGGTT-CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred CCCcccc------------cccCHHHHHHHHHhcCC-ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 9999864 45777888888888884 8999999999999999999999887654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=151.09 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=99.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCc----------ccccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE----------DYDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+++|+++.+. .+.++.+..........+ ..+.+||++|.. .+..++..++..+
T Consensus 33 ~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~------- 102 (195)
T 3pqc_A 33 NVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNR------- 102 (195)
T ss_dssp TSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcC-------
Confidence 79999999999988743 444554443332222112 357799999932 2221111111110
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
..++++++|+|+++..+.... .+...+... +.|+++|+
T Consensus 103 --------------------------------------~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~ 140 (195)
T 3pqc_A 103 --------------------------------------WSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVL 140 (195)
T ss_dssp --------------------------------------TTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEE
T ss_pred --------------------------------------cCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEE
Confidence 122999999999886554433 233333333 68999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+....+ +....+++..++...+..+++++||++|.||+++|+++.+.+.+
T Consensus 141 nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 141 TKMDKVKMSE----------RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECGGGSCGGG----------HHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EChhcCChHH----------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999986432 23444566777777665789999999999999999999988753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=152.30 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=105.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+++ .+.....+.+++ ..+.+|||+|++.+..... ...+.....
T Consensus 17 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~------~~~~~~~~~------- 81 (188)
T 2wjg_A 17 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSI------DEIIARDYI------- 81 (188)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccH------HHHHHHHHH-------
Confidence 799999999999876544444444 233345556665 6789999999987642210 001110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.. ..++++++|+|.++ +.... .|+..+... +.|+++|+||+|+...
T Consensus 82 ------------~~---------------~~~~~~i~v~d~~~---~~~~~-~~~~~~~~~--~~piilv~nK~Dl~~~- 127 (188)
T 2wjg_A 82 ------------IN---------------EKPDLVVNIVDATA---LERNL-YLTLQLMEM--GANLLLALNKMDLAKS- 127 (188)
T ss_dssp ------------HH---------------HCCSEEEEEEEGGG---HHHHH-HHHHHHHTT--TCCEEEEEECHHHHHH-
T ss_pred ------------hc---------------cCCCEEEEEecchh---HHHHH-HHHHHHHhc--CCCEEEEEEhhhcccc-
Confidence 00 01299999999886 44444 676666653 7899999999998754
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+. .++..+++.++ .+++++||+++.|++++|+++++.+....
T Consensus 128 -----------~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 128 -----------LGIE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp -----------TTCC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred -----------ccch-HHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 2233 35678888889 48999999999999999999999887654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-21 Score=152.45 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=91.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccce-eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.++.+.+... ...+++ .+.+|||+|........
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~----------------------- 86 (195)
T 1svi_A 33 NVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSK----------------------- 86 (195)
T ss_dssp TSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCH-----------------------
T ss_pred CCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCH-----------------------
Confidence 799999999999988766666666544432 234444 58999999943211000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
...+.+.......+... ..+|++++|||++++.++... .++..+.. .+.|+++|+||+|+....
T Consensus 87 ------~~~~~~~~~~~~~~~~~------~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 87 ------SEREAWGRMIETYITTR------EELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKG 150 (195)
T ss_dssp ------HHHHHHHHHHHHHHHHC------TTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGG
T ss_pred ------HHHHHHHHHHHHHHhhh------hcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChH
Confidence 00000111111111100 112899999999998888765 34444444 378999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHH-HHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 160 ETIEKLKEKKLAPITYPQGLS-MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+..+ ..+++.. +....+ .+++++||++|.|++++|+++.+.+.
T Consensus 151 ~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 151 KWDK----------HAKVVRQTLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp GHHH----------HHHHHHHHHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHH----------HHHHHHHHHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2111 1122222 222234 58999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-22 Score=154.44 Aligned_cols=149 Identities=18% Similarity=0.255 Sum_probs=100.9
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+.++..+.+...+.+++. .+.+|||+|+..+..... ...+...+..+
T Consensus 14 g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~------~~~~~~~~~~~---- 81 (172)
T 2gj8_A 14 NAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVE------RIGIERAWQEI---- 81 (172)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHH------HHHHHHHHHHH----
T ss_pred CCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHH------HHHHHHHHHHH----
Confidence 7999999999998764 334445545555667777875 478999999865321100 00000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
..+|++++|||++++.++... .|+..+.+.. .++|+++|+||+|+..
T Consensus 82 ------------------------------~~ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 82 ------------------------------EQADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp ------------------------------HTCSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred ------------------------------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECccCCc
Confidence 112999999999999998743 6777777654 4699999999999854
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .. +++..+ .+++++||++|.||+++|+++.+.+.
T Consensus 130 ~~-------------~~------~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 130 ET-------------LG------MSEVNG-HALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CC-------------CE------EEEETT-EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ch-------------hh------hhhccC-CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 21 00 111234 58999999999999999999998764
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-20 Score=156.50 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=108.3
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+.. ....|...........+ ....+.+|||||+..+.. +. .. +..|
T Consensus 20 nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~-~~-~l---~~~~----------- 82 (308)
T 3iev_A 20 NVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKK-SD-VL---GHSM----------- 82 (308)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCT-TC-HH---HHHH-----------
T ss_pred CCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCcccc-ch-hH---HHHH-----------
Confidence 799999999999988742 22222222222223333 146788999999876431 00 00 1111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.......+ ..+|++++|+|++++.++.... .|+..+... +.|+++|+||+|+...
T Consensus 83 -------------~~~~~~~l---------~~aD~il~VvD~~~~~~~~~~~-~~~~~l~~~--~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 83 -------------VEIAKQSL---------EEADVILFMIDATEGWRPRDEE-IYQNFIKPL--NKPVIVVINKIDKIGP 137 (308)
T ss_dssp -------------HHHHHHHH---------HHCSEEEEEEETTTBSCHHHHH-HHHHHTGGG--CCCEEEEEECGGGSSS
T ss_pred -------------HHHHHHHh---------hcCCEEEEEEeCCCCCCchhHH-HHHHHHHhc--CCCEEEEEECccCCCC
Confidence 11111110 0129999999999999998876 667777774 7899999999999832
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+....+....+.+.++ ..+++++||++|.|++++|+++...+...
T Consensus 138 ------------~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 138 ------------AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ------------GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred ------------HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 2244455667777773 56899999999999999999999988653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=151.53 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=103.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+.....| +..+.....+..++ ..+.+||+||+..+...+. ...++.....
T Consensus 15 nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~------~e~v~~~~~~------ 80 (258)
T 3a1s_A 15 NVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSI------DEKIARDYLL------ 80 (258)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSH------HHHHHHHHHH------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCH------HHHHHHHHHh------
Confidence 7999999999998765322222 22222233334334 6889999999987754331 0011110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+...
T Consensus 81 --------------------~--------~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~- 125 (258)
T 3a1s_A 81 --------------------K--------GDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKK- 125 (258)
T ss_dssp --------------------H--------SCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHH-
T ss_pred --------------------h--------cCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCc-
Confidence 0 1129999999999976654 344455444 7999999999998654
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+.. ++..+++.+|+ +++++||++|.|++++|+++.+.+..
T Consensus 126 -----------~~i~~-~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 126 -----------TGMKI-DRYELQKHLGI-PVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp -----------TTCCB-CHHHHHHHHCS-CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred -----------cchHH-HHHHHHHHcCC-CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 22332 46788899994 99999999999999999999997753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-20 Score=155.93 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=102.2
Q ss_pred CCChhhhHHhhhhCC-CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++.. +.+.+..+..+ .+...++. ...+.+|||||+..+..... ...++....
T Consensus 13 nvGKSTL~n~L~g~~~~v~~~pg~tv~--~~~~~~~~-~~~l~l~DtpG~~~~~~~~~------~e~v~~~~~------- 76 (272)
T 3b1v_A 13 NSGKTSLFNLITGHNQRVGNWPGVTVE--RKSGLVKK-NKDLEIQDLPGIYSMSPYSP------EAKVARDYL------- 76 (272)
T ss_dssp TSSHHHHHHHHHCCCCCCCSSSCCCCS--CEEEECTT-CTTEEEEECCCCSCSSCSSH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCCcEE--EEEEEEec-CCeEEEEECCCcCccCCCCh------HHHHHHHHH-------
Confidence 799999999999865 34444322222 22233444 56899999999987653211 001111000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
.. ..+|++++|||+++.+++. .|...+... +.|+++|+||+|+...
T Consensus 77 -------------------~~--------~~~d~vi~V~D~t~~e~~~----~~~~~l~~~--~~p~ilv~NK~Dl~~~- 122 (272)
T 3b1v_A 77 -------------------LS--------QRADSILNVVDATNLERNL----YLTTQLIET--GIPVTIALNMIDVLDG- 122 (272)
T ss_dssp -------------------HT--------TCCSEEEEEEEGGGHHHHH----HHHHHHHHT--CSCEEEEEECHHHHHH-
T ss_pred -------------------hc--------CCCCEEEEEecCCchHhHH----HHHHHHHhc--CCCEEEEEEChhhCCc-
Confidence 00 1129999999999876653 444555543 7999999999998653
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+. .++..+++.+|+ +++++||++|.|++++|+++.+.+..
T Consensus 123 -----------~~~~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 123 -----------QGKK-INVDKLSYHLGV-PVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp -----------TTCC-CCHHHHHHHHTS-CEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred -----------CCcH-HHHHHHHHHcCC-CEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 2233 356788888995 89999999999999999999986543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-20 Score=149.01 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=93.1
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcccc----ccchhHHhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ----TGLSMAKEIGA 73 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~~~~~~~~ 73 (228)
|||||||+++|.++.+.. .+.++++..+ ..+.+.+||++|++.++..+..++.. +
T Consensus 22 g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~---------- 83 (218)
T 1nrj_B 22 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV---------- 83 (218)
T ss_dssp TSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE----------
T ss_pred CCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccC----------
Confidence 799999999999988754 3566665444 34678999999998887665555443 3
Q ss_pred hhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh-----CCCCCEE
Q psy8274 74 VKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH-----CPSTPII 147 (228)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~-----~~~~pii 147 (228)
|++++|||++ ++.+|..+. .|+..+... ..+.|++
T Consensus 84 --------------------------------------~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~i 124 (218)
T 1nrj_B 84 --------------------------------------KGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDIL 124 (218)
T ss_dssp --------------------------------------EEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEE
T ss_pred --------------------------------------CEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEE
Confidence 9999999999 899999888 776666543 2579999
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG 200 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~ 200 (228)
+|+||+|+.......+. ...-.+++..++...+ .+++++||++|.+
T Consensus 125 lv~nK~Dl~~~~~~~~~------~~~l~~~~~~~~~~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 125 IACNKSELFTARPPSKI------KDALESEIQKVIERRK-KSLNEVERKINEE 170 (218)
T ss_dssp EEEECTTSTTCCCHHHH------HHHHHHHHHHHHHHHH-HHHHC--------
T ss_pred EEEEchHhcccCCHHHH------HHHHHHHHHHHHHHHh-ccccccccccccc
Confidence 99999999875321111 0111445667777777 4788999998764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=145.70 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=96.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEc-CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVD-GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.+.....++.+.+.. ....+. .....+.+|||||......... .
T Consensus 39 ~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------~----------- 98 (223)
T 4dhe_A 39 NAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA---------A----------- 98 (223)
T ss_dssp HHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST---------H-----------
T ss_pred CCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh---------h-----------
Confidence 68999999999988632222222222221 122333 3346789999999643211000 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.+.+.......+.. ...+|++++|+|++++.+.... .|+..+... +.|+++|+||+|+...
T Consensus 99 ---------~~~~~~~~~~~~~~------~~~~d~vi~v~d~~~~~~~~~~--~~~~~l~~~--~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 99 ---------KAHWEQLLSSYLQT------RPQLCGMILMMDARRPLTELDR--RMIEWFAPT--GKPIHSLLTKCDKLTR 159 (223)
T ss_dssp ---------HHHHHHHHHHHHHH------CTTEEEEEEEEETTSCCCHHHH--HHHHHHGGG--CCCEEEEEECGGGSCH
T ss_pred ---------HHHHHHHHHHHHhc------CcCcCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEeccccCCh
Confidence 00000000000000 0112899999999986554332 566666654 7899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh------CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI------GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
....+. .++.......+ ...+++++||++|.||+++|+++.+.+.....
T Consensus 160 ~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 160 QESINA----------LRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHHH----------HHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhHHHH----------HHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 432111 11222222221 33689999999999999999999998875443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-20 Score=152.40 Aligned_cols=153 Identities=11% Similarity=0.121 Sum_probs=100.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+.....|++ .+.....+.+++. .+.+|||||+..+....... .....++.....
T Consensus 11 n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~--~~~e~i~~~~~~------ 80 (256)
T 3iby_A 11 NCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGI--SQDEQIAAQSVI------ 80 (256)
T ss_dssp TSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC--------CHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCC--CHHHHHHHHHHh------
Confidence 799999999999876533333333 3444555666664 78999999997765321100 000001110000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ..+|++++|+|+++.+++..+. . .+... +.|+++|+||+|+....
T Consensus 81 --------------------~--------~~~d~vi~VvDas~~~~~~~l~-~---~l~~~--~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 81 --------------------D--------LEYDCIINVIDACHLERHLYLT-S---QLFEL--GKPVVVALNMMDIAEHR 126 (256)
T ss_dssp --------------------H--------SCCSEEEEEEEGGGHHHHHHHH-H---HHTTS--CSCEEEEEECHHHHHHT
T ss_pred --------------------h--------CCCCEEEEEeeCCCchhHHHHH-H---HHHHc--CCCEEEEEEChhcCCcC
Confidence 0 1129999999999977766554 3 33333 68999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.+.. +...+.+.+| .+++++||++|.|++++|+++.+.
T Consensus 127 ------------~~~~-~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 ------------GISI-DTEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------------TCEE-CHHHHHHHHC-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------------CcHH-HHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 1222 2456778889 499999999999999999999886
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=153.59 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=111.3
Q ss_pred hhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccc
Q psy8274 5 TCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALT 83 (228)
Q Consensus 5 Tsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (228)
.+|+.+|+.+.|. ..+.||+++.+...+..++ .+.+||+ +++++.+++.+++++
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~a-------------------- 85 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANV-------------------- 85 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESC--------------------
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccC--------------------
Confidence 3789999999998 8999999987765433333 7899999 899999999999998
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHH
Q psy8274 84 QKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETI 162 (228)
Q Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~ 162 (228)
|++|+|||++++. ++..+. .|+..+... ++|++||+||+||.+...
T Consensus 86 ----------------------------d~vilV~D~~~~~~s~~~l~-~~l~~~~~~--~~piilv~NK~DL~~~~~-- 132 (301)
T 1u0l_A 86 ----------------------------DQVILVVTVKMPETSTYIID-KFLVLAEKN--ELETVMVINKMDLYDEDD-- 132 (301)
T ss_dssp ----------------------------CEEEEEECSSTTCCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHHH--
T ss_pred ----------------------------CEEEEEEeCCCCCCCHHHHH-HHHHHHHHC--CCCEEEEEeHHHcCCchh--
Confidence 9999999999998 788776 899887663 799999999999986522
Q ss_pred HHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHH
Q psy8274 163 EKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+ +++..+++.++. .+++++||++|.||+++|..+..
T Consensus 133 ----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 133 ----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp ----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred ----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 2 345666666651 38999999999999999988754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=160.73 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=103.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++.. +...+.+|..+.+...+..++. .+.+|||+|...........- .........++.
T Consensus 205 ~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e---~~~~~~~~~~~~--- 276 (456)
T 4dcu_A 205 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTE---KYSVLRALKAID--- 276 (456)
T ss_dssp TSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCS---HHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHH---HHHHHHHHHHHh---
Confidence 799999999999764 2345555656666777777775 688999999543221110000 000000000111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++|++++|+|++++.+-... .|...+... +.|++||+||+|+...
T Consensus 277 -------------------------------~ad~~llviD~~~~~~~~~~--~~~~~~~~~--~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 277 -------------------------------RSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDK 321 (456)
T ss_dssp -------------------------------HCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCC
T ss_pred -------------------------------hCCEEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEEChhcCCC
Confidence 11999999999986554443 566666653 6999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHh----CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEI----GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++...++.. +..+++++||++|.||+++|..+.+.+..
T Consensus 322 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 322 ------------DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ------------CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ------------chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 345566666666654 23689999999999999999999987743
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=160.80 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=101.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+ ...+.+|..+.+...+..++. .+.+|||+|+.+........-.. .......++..
T Consensus 185 nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~---~~~~~~~~~~~-- 257 (436)
T 2hjg_A 185 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKY---SVLRALKAIDR-- 257 (436)
T ss_dssp TSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHH---HHHHHHHHHHH--
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHH---HHHHHHHHHHh--
Confidence 7999999999998876 344555556666667777775 47899999986543321110000 00000001111
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|++++|||++++.+++.. .|+..+... +.|+++|+||+|+.+.
T Consensus 258 --------------------------------ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 258 --------------------------------SEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDK 301 (436)
T ss_dssp --------------------------------CSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCC
T ss_pred --------------------------------CCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCc
Confidence 1999999999999998886 577776654 7999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHH-HHHh---CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSM-AKEI---GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..+.++.... .+.+ +..+++++||++|.||+++|+.+.+.+..
T Consensus 302 ~------------~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 302 D------------ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp C------------TTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred c------------hHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 2 2222233222 2222 23589999999999999999999887753
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=155.86 Aligned_cols=145 Identities=19% Similarity=0.161 Sum_probs=86.7
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCC--------ccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL--------SYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~~~~~ 70 (228)
|||||||+|+|++.. +...+.+|..+.+...+.+++ +.+.+|||+|+..+...+.. ++..+
T Consensus 243 nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a------- 313 (476)
T 3gee_A 243 NAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA------- 313 (476)
T ss_dssp TSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSC-------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccC-------
Confidence 799999999999875 344455555666667777777 56899999998775533321 23333
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++++|||++++.++..+. .+...+... .+.|+++|+
T Consensus 314 -----------------------------------------D~vl~VvD~s~~~s~~~~~-~~~~~l~~l-~~~piIvV~ 350 (476)
T 3gee_A 314 -----------------------------------------DLILYLLDLGTERLDDELT-EIRELKAAH-PAAKFLTVA 350 (476)
T ss_dssp -----------------------------------------SEEEEEEETTTCSSGGGHH-HHHHHHHHC-TTSEEEEEE
T ss_pred -----------------------------------------CEEEEEEECCCCcchhhhH-HHHHHHHhc-CCCCEEEEE
Confidence 9999999999998885432 222222222 269999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
||+|+..... .. ...+.+. +..+++++||++|.|++++|+++.+.+.
T Consensus 351 NK~Dl~~~~~------------~~---~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 351 NKLDRAANAD------------AL---IRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECTTSCTTTH------------HH---HHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ECcCCCCccc------------hh---HHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999987532 11 1233333 2258999999999999999999999887
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=150.38 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=97.2
Q ss_pred CCChhhhHHhhhhCCCCC-CCC-ceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYI-PTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+.. ... .|+.+.....+.. ....+.+|||||........
T Consensus 17 nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l---------------------- 72 (301)
T 1wf3_A 17 NVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDAL---------------------- 72 (301)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHH----------------------
T ss_pred CCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHH----------------------
Confidence 799999999999988742 222 2333222222222 34688999999987532110
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++.|.......+ ..+|++++|||++++.+.... .++..+....++.|+++|+||+|+...
T Consensus 73 ---------~~~~~~~~~~~l---------~~ad~il~VvD~~~~~~~~~~--~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 73 ---------GEFMDQEVYEAL---------ADVNAVVWVVDLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp ---------HHHHHHHHHHHT---------SSCSEEEEEEETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred ---------HHHHHHHHHHHH---------hcCCEEEEEEECCCCCChHHH--HHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 011111111111 123999999999987665532 344566665557999999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH-hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE-IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
... ....++. .++.+++++||++|.|++++|+.+...+.
T Consensus 133 ~~~----------------~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 133 PEE----------------AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHH----------------HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred hHH----------------HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 320 1112222 34457999999999999999999988664
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-19 Score=154.00 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=107.7
Q ss_pred CCCCCCceeeeccceeE----------EEcC----eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccc
Q psy8274 16 FPGEYIPTVFDNYSANV----------MVDG----KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSA 81 (228)
Q Consensus 16 ~~~~~~~t~~~~~~~~~----------~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (228)
+.+.|.||+++.+..++ .+++ ..+.+++|||+|++.++.+|..+|+++
T Consensus 146 ~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~------------------ 207 (354)
T 2xtz_A 146 SDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGV------------------ 207 (354)
T ss_dssp HSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTE------------------
T ss_pred hcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCC------------------
Confidence 35678899877664322 2355 678999999999999999999999999
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------ChhhHHHHHHhhHHHHhhh--CCCCCEEEE
Q psy8274 82 LTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------NPASFENVRAKWYPEVRHH--CPSTPIILV 149 (228)
Q Consensus 82 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------~~~s~~~~~~~~~~~l~~~--~~~~piilv 149 (228)
+++|+|||++ +..+|.... .|+..+.+. ..++|++||
T Consensus 208 ------------------------------~~iI~v~dis~ydq~l~e~~~~~s~~~~~-~~~~~i~~~~~~~~~piiLv 256 (354)
T 2xtz_A 208 ------------------------------TAVIFCAAISEYDQTLFEDEQKNRMMETK-ELFDWVLKQPCFEKTSFMLF 256 (354)
T ss_dssp ------------------------------EEEEEEEEGGGTTCBCSSCTTSBHHHHHH-HHHHHHHTCGGGSSCEEEEE
T ss_pred ------------------------------CEEEEEEECcccccccccccchhHHHHHH-HHHHHHHhccccCCCeEEEE
Confidence 9999999998 888999988 788777654 357999999
Q ss_pred EeCCCCCCchHHHHH------Hhhcc---CccccHHHHHHHHHHh---------------CCceEEEecccCCCCHHHHH
Q psy8274 150 GTKLDLRDDKETIEK------LKEKK---LAPITYPQGLSMAKEI---------------GAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~------~~~~~---~~~v~~~~~~~~~~~~---------------~~~~~~evSa~~~~~v~~lf 205 (228)
|||+|+...+-.... +.... ....+.+++..++... ....++++||+++.||+++|
T Consensus 257 gNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 257 LNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp EECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred EECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 999998643110000 00000 0012356777775431 22356899999999999999
Q ss_pred HHHHHHhcC
Q psy8274 206 DEAIRAVLC 214 (228)
Q Consensus 206 ~~l~~~i~~ 214 (228)
.++.+.+++
T Consensus 337 ~~v~~~I~~ 345 (354)
T 2xtz_A 337 KLVDETLRR 345 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-19 Score=150.13 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=102.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|+|++..+...+.|++ .+.....+..++ ..+.+|||||+..+......... ...++......
T Consensus 13 n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~--~e~i~~~~~~~----- 83 (274)
T 3i8s_A 13 NSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSL--DEQIACHYILS----- 83 (274)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCH--HHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCH--HHHHHHHHHhh-----
Confidence 799999999999876543333333 333344455555 45788999999877643321110 00111111000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
..+|++++|+|+++.++...+. ..+... +.|+++|+||+|+....
T Consensus 84 -----------------------------~~~d~ii~VvD~~~~~~~~~~~----~~l~~~--~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 84 -----------------------------GDADLLINVVDASNLERNLYLT----LQLLEL--GIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp -----------------------------TCCSEEEEEEEGGGHHHHHHHH----HHHHHH--TCCEEEEEECHHHHHHT
T ss_pred -----------------------------cCCCEEEEEecCCChHHHHHHH----HHHHhc--CCCEEEEEECccchhhh
Confidence 1229999999999876655443 344444 79999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
.+. .+...+++.+|+ +++++||++|.|++++|+++.+.+...
T Consensus 129 ------------~~~-~~~~~l~~~lg~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 129 ------------NIR-IEIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ------------TEE-ECHHHHHHHHTS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred ------------hHH-HHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 122 235677888894 999999999999999999998876543
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=145.19 Aligned_cols=155 Identities=20% Similarity=0.092 Sum_probs=102.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|++..+...+.+++ .+.....+..++. .+.+||+||+..+..... ...++....
T Consensus 13 g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~------~~~~~~~~~------- 77 (271)
T 3k53_A 13 NVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSI------DELIARNFI------- 77 (271)
T ss_dssp SSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCH------HHHHHHHHH-------
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCH------HHHHHHHhh-------
Confidence 799999999999877643333433 2333445555664 589999999987654211 000000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
. ...+|++++|+|+++.+... .|...+... ...|+++|+||+|+....
T Consensus 78 -------------------~--------~~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 78 -------------------L--------DGNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp -------------------H--------TTCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHH
T ss_pred -------------------h--------ccCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCccc
Confidence 0 01129999999999864322 333344443 239999999999987542
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.+.. +...+.+.+| .+++++||++|.|++++|+.+...+....
T Consensus 126 ------------~~~~-~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 126 ------------GAKI-DIKKMRKELG-VPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp ------------TCCC-CHHHHHHHHS-SCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred ------------ccHH-HHHHHHHHcC-CcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 1222 2677888899 58999999999999999999999876543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=153.60 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=93.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|+++.. ..++..+..+.....+.+++. .+.+|||+|.+.... ..+. ..+..
T Consensus 11 nvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~---~~~~---~~~~~--------- 73 (439)
T 1mky_A 11 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQ---DIIS---QKMKE--------- 73 (439)
T ss_dssp TSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGG---GCCC---HHHHH---------
T ss_pred CCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCcccccc---chHH---HHHHH---------
Confidence 7999999999998764 344444445666677777886 468899999875321 0000 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+....+ ..+|++++|||++++.+..+. .+...++.. ++|++||+||+|+.+.
T Consensus 74 ---------------~~~~~~---------~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~ 125 (439)
T 1mky_A 74 ---------------VTLNMI---------READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE 125 (439)
T ss_dssp ---------------HHHHHH---------TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH
T ss_pred ---------------HHHHHH---------HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc
Confidence 000000 112999999999987666542 233334443 6899999999998642
Q ss_pred hHHHHHHhhccCccccHHHH-HHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQG-LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. ..++ ..+. .+|+.+++++||++|.|++++|+++...+..
T Consensus 126 ~---------------~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 126 F---------------EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp H---------------HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred c---------------HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 0 0112 2333 4565578999999999999999999998864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-19 Score=155.55 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=102.3
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++..+. ..+.++..+.....+.+.+. ..+.+|||+|+..+..+........ ..++
T Consensus 44 ~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~-------~~~l---- 111 (423)
T 3qq5_A 44 NVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA-------RRVF---- 111 (423)
T ss_dssp STTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH-------HHHH----
T ss_pred CCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH-------HHHH----
Confidence 79999999999988763 33444444555566666554 2788999999998766544311110 0000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++|||++..+.. ..|+..+... +.|+++|+||+|+...
T Consensus 112 ------------------------------~~aD~vllVvD~~~~~~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 112 ------------------------------YRADCGILVTDSAPTPYE----DDVVNLFKEM--EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp ------------------------------TSCSEEEEECSSSCCHHH----HHHHHHHHHT--TCCEEEECCCCTTTTC
T ss_pred ------------------------------hcCCEEEEEEeCCChHHH----HHHHHHHHhc--CCCEEEEEeCcCCCCc
Confidence 112999999999433222 2677777766 7999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. .. +.+..+++.++ .+++++||++|.|++++|+++.+.+...
T Consensus 156 ~------------~~--~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 156 K------------AE--ELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp C------------CT--HHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred c------------HH--HHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 2 12 45566666778 4899999999999999999999998655
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-18 Score=153.66 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=103.0
Q ss_pred CCChhhhHHhhhhCC--CCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCc-ccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-DYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|+|++.. +..++..|..+.....+.+++. .+.+|||+|.. .+....... + +...+..+.
T Consensus 253 nvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~----g--i~~~~~~~~-- 322 (482)
T 1xzp_A 253 NVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERL----G--IERTLQEIE-- 322 (482)
T ss_dssp HHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCC----C--HHHHHHHHH--
T ss_pred CCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHH----H--HHHHHHHhh--
Confidence 689999999999875 3556666667777777888874 57899999987 543222111 0 000000000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
.+|++|+|||++++.+++.. .++..+ .+.|+++|+||+|+..
T Consensus 323 --------------------------------~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 323 --------------------------------KADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVE 364 (482)
T ss_dssp --------------------------------HCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCC
T ss_pred --------------------------------cccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECccccc
Confidence 11999999999999888765 344333 3689999999999975
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
. ++.++...++. ++ .+++++||++|.|++++|+++.+.+.
T Consensus 365 ~--------------~~~~~~~~~~~-~~-~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 365 K--------------INEEEIKNKLG-TD-RHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp C--------------CCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred c--------------cCHHHHHHHhc-CC-CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3 23334433332 33 47999999999999999999998765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=142.79 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=71.4
Q ss_pred ceEEEEEecCChh--hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPA--SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~--s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
|++++|+|++++. ++.... .|+..+.....+.|+++|+||+|+..... .+++..+++..+ .+
T Consensus 248 d~illV~D~s~~~~~~~~~~~-~~~~~i~~~~~~~piilV~NK~Dl~~~~~--------------~~~~~~~~~~~~-~~ 311 (357)
T 2e87_A 248 NLIIYIFDPSEHCGFPLEEQI-HLFEEVHGEFKDLPFLVVINKIDVADEEN--------------IKRLEKFVKEKG-LN 311 (357)
T ss_dssp SEEEEEECTTCTTSSCHHHHH-HHHHHHHHHTTTSCEEEEECCTTTCCHHH--------------HHHHHHHHHHTT-CC
T ss_pred CEEEEEEeCCccccCCHHHHH-HHHHHHHHhcCCCCEEEEEECcccCChHH--------------HHHHHHHHHhcC-CC
Confidence 9999999999887 677776 88888887655799999999999987532 134556666777 58
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++++||++|.|++++|+++.+.+.
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998774
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-18 Score=151.46 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=108.8
Q ss_pred CCCCCCceeeeccc----------eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccc
Q psy8274 16 FPGEYIPTVFDNYS----------ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQK 85 (228)
Q Consensus 16 ~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (228)
+.+.|.||..+.+. ..+.++ .+.+.+|||+|++.++.+|..+|+++
T Consensus 162 ~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a---------------------- 217 (353)
T 1cip_A 162 AQPNYIPTQQDVLRTRVKTTGIVETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGV---------------------- 217 (353)
T ss_dssp TSTTCCCCHHHHHTCCCCCCSEEEEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTC----------------------
T ss_pred hcCCCCCCccccccccCceeceEEEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcC----------------------
Confidence 34567776654322 123333 47899999999999999999999999
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCC
Q psy8274 86 GLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKL 153 (228)
Q Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~ 153 (228)
+++|||||+++ ..+|.... .|+..+.+. ..++|++|++||+
T Consensus 218 --------------------------~~iIfV~dls~~d~~l~ed~~~nr~~e~~-~~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 218 --------------------------TAIIFCVALSDYDLVLAEDEEMNRMHESM-KLFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp --------------------------SEEEEEEEGGGGGCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECH
T ss_pred --------------------------CEEEEEEECccccccccccchhhhHHHHH-HHHHHHHcCccccCCcEEEEEECc
Confidence 99999999999 56788887 787777654 2579999999999
Q ss_pred CCCCchHHH---HH-HhhccCccccHHHHHHHHHH-----------hCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETI---EK-LKEKKLAPITYPQGLSMAKE-----------IGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~---~~-~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+....-.. +. +... ...++.+++..+++. .+ +.++++||+++.||+++|.++.+.+++.
T Consensus 271 DL~~~ki~~~~l~~~fp~~-~g~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEY-AGSNTYEEAAAYIQCQFEDLNKRKDTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTC-CSCSCHHHHHHHHHHHHHTTCSCTTTCC-EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhccccchhhccccc-CCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 986431000 00 0000 013678888888873 44 5899999999999999999999988753
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=147.11 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=107.2
Q ss_pred CCChhhhHHhhhhCCCC-CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+. ..|..|........+.+++ ...+.+||+||.......+
T Consensus 168 nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~----------------------- 223 (342)
T 1lnz_A 168 SVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQG----------------------- 223 (342)
T ss_dssp TSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCT-----------------------
T ss_pred CCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCccccccc-----------------------
Confidence 79999999999977542 2333232222222344443 1468899999964321111
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHC---PSTPIILVGTKL 153 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~ 153 (228)
.++...|..+.+. ++++|+|+|+++ +.++..+. .|..++..+. .+.|++||+||+
T Consensus 224 -----~~l~~~fl~~i~~-------------~d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~ 284 (342)
T 1lnz_A 224 -----VGLGHQFLRHIER-------------TRVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKM 284 (342)
T ss_dssp -----TTTHHHHHHHHHH-------------CCEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECT
T ss_pred -----chhHHHHHHHHHh-------------ccEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECc
Confidence 0111112222221 299999999998 88999887 8999998875 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
|+.... +....+.+.++. .+++++||+++.|++++|.++.+.+.....
T Consensus 285 Dl~~~~----------------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 285 DMPEAA----------------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp TSTTHH----------------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred cCCCCH----------------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 998642 234455555542 479999999999999999999998876443
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=148.44 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=106.3
Q ss_pred CCCCCceeeeccce----------eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcccccccc
Q psy8274 17 PGEYIPTVFDNYSA----------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKG 86 (228)
Q Consensus 17 ~~~~~~t~~~~~~~----------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (228)
.++|.||+.+.+.. .+.+++ +.+++|||+|++.++.+|..+|+++
T Consensus 187 ~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a----------------------- 241 (402)
T 1azs_C 187 QDDYVPSDQDLLRCRVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDV----------------------- 241 (402)
T ss_dssp CTTCCCCHHHHHHCCCCCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTC-----------------------
T ss_pred ccccCCccccccccccceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhccCC-----------------------
Confidence 45788887665532 233343 7899999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCC
Q psy8274 87 LKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKLD 154 (228)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~D 154 (228)
+++|||||+++ ..+|..+. .|+..+.+. ..++|++|||||+|
T Consensus 242 -------------------------~~iIfV~dis~ydq~l~ed~~~ns~~e~~-~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 242 -------------------------TAIIFVVASSSYNMVIREDNQTNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp -------------------------CEEEEEEETTGGGCBCTTTSCSBHHHHHH-HHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred -------------------------CEEEEEEECcccccccccccccchHHHHH-HHHHHHHhcccCCCCeEEEEEEChh
Confidence 99999999999 89999998 888888765 35799999999999
Q ss_pred CCCchHHHHH------Hhhcc------------CccccHHHHHHHHH-----H--------hCCceEEEecccCCCCHHH
Q psy8274 155 LRDDKETIEK------LKEKK------------LAPITYPQGLSMAK-----E--------IGAVKYLECSALTQKGLKT 203 (228)
Q Consensus 155 l~~~~~~~~~------~~~~~------------~~~v~~~~~~~~~~-----~--------~~~~~~~evSa~~~~~v~~ 203 (228)
|...+-.... +-... ...-+.+++..|++ . .+ +.++++||+++.||++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~-~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHY-CYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSC-EEEEECCTTCHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcc-cEEEEEEeecCcCHHH
Confidence 8643210000 00000 00002456666642 2 23 4678999999999999
Q ss_pred HHHHHHHHhcC
Q psy8274 204 VFDEAIRAVLC 214 (228)
Q Consensus 204 lf~~l~~~i~~ 214 (228)
+|..+.+.+++
T Consensus 375 vF~~v~~~I~~ 385 (402)
T 1azs_C 375 VFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-18 Score=155.87 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=105.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|.+..+...+.+++...+ ...+.+++ ...+.+|||||++.|..++...+..+
T Consensus 14 ~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~a---------------- 76 (537)
T 3izy_P 14 DHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVT---------------- 76 (537)
T ss_dssp TTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSB----------------
T ss_pred CCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccC----------------
Confidence 7999999999998877655666664433 23333321 23688999999999999888888887
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
|++++|+|+++........ ++..+.. .++|+++|+||+|+....
T Consensus 77 --------------------------------D~vILVVDa~dg~~~qt~e--~l~~~~~--~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 77 --------------------------------DIVILVVAADDGVMKQTVE--SIQHAKD--AHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp --------------------------------SSCEEECBSSSCCCHHHHH--HHHHHHT--TTCCEEECCBSGGGTTTS
T ss_pred --------------------------------CEEEEEEECCCCccHHHHH--HHHHHHH--cCCcEEEEEecccccccc
Confidence 9999999999876665443 2333333 368999999999997532
Q ss_pred HHHHHHhhccCccccHHHHHHH---HHHh-CCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSM---AKEI-GAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~---~~~~-~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. ..+. .+...+ +..+ +..+++++||++|.|++++|+.+...+...
T Consensus 121 ~----------~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 121 P----------EKVK-KELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML 169 (537)
T ss_dssp C----------CSSS-SHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred h----------HHHH-HHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence 1 0111 111111 1112 125899999999999999999999876543
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-18 Score=143.96 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=99.2
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
.+.+++||++||+.++.+|..+|+++ +++|+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~------------------------------------------------~~iIfV 197 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENV------------------------------------------------TSIMFL 197 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSC------------------------------------------------SEEEEE
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCC------------------------------------------------CEEEEE
Confidence 47899999999999999999999999 999999
Q ss_pred EecC----------ChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHH
Q psy8274 118 FSLV----------NPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSM 181 (228)
Q Consensus 118 ~Dvt----------~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~ 181 (228)
||++ +..+|.... .|+..+.+.. .++|++|++||+|+...+- ...-+.......++.+++..+
T Consensus 198 ~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~f 276 (327)
T 3ohm_A 198 VALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF 276 (327)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHH
T ss_pred EECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHH
Confidence 9665 677788777 6776665432 5799999999999875320 000011111224788889888
Q ss_pred HH----------HhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 182 AK----------EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 182 ~~----------~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+. ..+ +.++++||+++.||+.+|..+.+.|++..
T Consensus 277 i~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 277 ILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 54 345 57899999999999999999999998654
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-17 Score=141.33 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCCCceeeeccce----------eEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcccccccc
Q psy8274 17 PGEYIPTVFDNYSA----------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKG 86 (228)
Q Consensus 17 ~~~~~~t~~~~~~~----------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (228)
.+.|.||..+.+.. .+.++ .+.+.+|||+|++.++..|..+|+++
T Consensus 171 ~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~----------------------- 225 (362)
T 1zcb_A 171 VPDYIPSQQDILLARRPTKGIHEYDFEIK--NVPFKMVDVGGQRSERKRWFECFDSV----------------------- 225 (362)
T ss_dssp STTCCCCHHHHHHCCCCCSSEEEEEEEET--TEEEEEEEECC-------CTTSCTTC-----------------------
T ss_pred cCCCCCChhhhhhccCCccceEEEEeeeC--CeEEEEEeccchhhhhhhHHHHhCCC-----------------------
Confidence 44677776544322 23333 37899999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----------hhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCC
Q psy8274 87 LKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----------PASFENVRAKWYPEVRHH--CPSTPIILVGTKLD 154 (228)
Q Consensus 87 v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----------~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~D 154 (228)
+++|||||+++ ..+|.... .|+..+.+. ..++|++|++||+|
T Consensus 226 -------------------------~~iIfv~dls~~dq~l~ed~~~n~~~es~-~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 226 -------------------------TSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp -------------------------CEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred -------------------------CEEEEEEECccccccccccccccHHHHHH-HHHHHHhcchhhCCCCEEEEEEChh
Confidence 99999999999 78999988 777777654 35799999999999
Q ss_pred CCCchHH---HH-HHhhccCccccHHHHHHHHH-----------HhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKET---IE-KLKEKKLAPITYPQGLSMAK-----------EIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~---~~-~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+....-. .. -+.......++.+++..++. ..+ +.++++||+++.||+++|.++.+.+++
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 8643100 00 00000001266778887762 234 478999999999999999999998864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-18 Score=152.38 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=84.7
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc--------cCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD--------RLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+|+|++..+. .++..+..+.....+.+++ ..+.+|||+|++... ..+..++..+
T Consensus 13 nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a------- 83 (436)
T 2hjg_A 13 NVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA------- 83 (436)
T ss_dssp TSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHHHC-------
T ss_pred CCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC-------
Confidence 79999999999987653 2222232332333333333 578999999986211 1111111111
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++++|+|++++.++.+. .+...+++ .+.|++||+
T Consensus 84 -----------------------------------------d~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~ 118 (436)
T 2hjg_A 84 -----------------------------------------DVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAV 118 (436)
T ss_dssp -----------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEE
T ss_pred -----------------------------------------CEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEE
Confidence 999999999998777653 34444443 378999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+..... . ...+. .+|+.+++++||++|.|++++|+++.+.+..
T Consensus 119 NK~D~~~~~~----------~------~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 119 NKLDNTEMRA----------N------IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ECCCC---------------C------CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ECccCccchh----------h------HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 9999875321 0 01122 3454579999999999999999999998864
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=144.57 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=94.6
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++..+ ...+.+|..+.....+.+++. .+.+|||+|...+........-..
T Consensus 234 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~--------------- 296 (462)
T 3geh_A 234 NVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVER--------------- 296 (462)
T ss_dssp TSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC---------------------------------
T ss_pred CCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHH---------------
Confidence 7999999999997643 444445555666677778884 568999999865443222110000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+-.....+|++++|||++++.+.... .|+..+. ..|+++|+||+|+...
T Consensus 297 -------------------------~~~~~~~aD~vl~VvD~s~~~~~~~~--~i~~~l~----~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 297 -------------------------SRQAANTADLVLLTIDAATGWTTGDQ--EIYEQVK----HRPLILVMNKIDLVEK 345 (462)
T ss_dssp ---------------------------CCCCSCSEEEEEEETTTCSCHHHH--HHHHHHT----TSCEEEEEECTTSSCG
T ss_pred -------------------------HhhhhhcCCEEEEEeccCCCCCHHHH--HHHHhcc----CCcEEEEEECCCCCcc
Confidence 00011222999999999998877663 5665553 3799999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.. +. ....+. .+ .+++++||++|.|++++|+++.+.+....
T Consensus 346 ~~------------~~--~~~~~~--~~-~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 346 QL------------IT--SLEYPE--NI-TQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp GG------------ST--TCCCCT--TC-CCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred hh------------hH--HHHHhc--cC-CcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 32 11 011111 23 58999999999999999999999887654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=141.65 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=85.1
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.+|||||++.|.......+..+ |++++|
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~------------------------------------------------D~~ilV 105 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALM------------------------------------------------DGAILV 105 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTC------------------------------------------------SEEEEE
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhC------------------------------------------------CEEEEE
Confidence 36899999999988766555445555 999999
Q ss_pred EecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC--CceEEEecc
Q psy8274 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLECSA 195 (228)
Q Consensus 118 ~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~evSa 195 (228)
+|++++.++.... .|+..+.... ..|+++|+||+|+.+.....+ ..++...+....+ ..+++++||
T Consensus 106 vda~~~~~~~qt~-~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~----------~~~~i~~~l~~~~~~~~~ii~vSA 173 (403)
T 3sjy_A 106 VAANEPFPQPQTR-EHFVALGIIG-VKNLIIVQNKVDVVSKEEALS----------QYRQIKQFTKGTWAENVPIIPVSA 173 (403)
T ss_dssp EETTSCSSCHHHH-HHHHHHHHHT-CCCEEEEEECGGGSCHHHHHH----------HHHHHHHHHTTSTTTTCCEEECBT
T ss_pred EECCCCCCcHHHH-HHHHHHHHcC-CCCEEEEEECccccchHHHHH----------HHHHHHHHHHhhCCCCCEEEEEEC
Confidence 9999987666665 5665555442 358999999999987542111 1122233332221 258999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCC
Q psy8274 196 LTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 196 ~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++|.|++++|+.+.+.+..+..
T Consensus 174 ~~g~gi~~L~~~l~~~l~~~~~ 195 (403)
T 3sjy_A 174 LHKINIDSLIEGIEEYIKTPYR 195 (403)
T ss_dssp TTTBSHHHHHHHHHHHSCCCCC
T ss_pred CCCcChHHHHHHHHHhCCCCCC
Confidence 9999999999999987765443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=140.25 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCC---CccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP---LSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+|++++... ...+..|..+.....+.++|. .+.+|||+|......... ..+... ....++.
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~-----~~~~~i~ 262 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY-----RVVDSIE 262 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH-----HHHHHHH
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH-----HHHHHHh
Confidence 7999999999998764 344455555666677888886 568899999865443321 011000 0000000
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCC
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDL 155 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 155 (228)
.+|++++|+|++++.+.... .+...+... +.|+++|+||+|+
T Consensus 263 ----------------------------------~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl 304 (439)
T 1mky_A 263 ----------------------------------KADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDL 304 (439)
T ss_dssp ----------------------------------HCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGG
T ss_pred ----------------------------------hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccC
Confidence 01999999999988777653 344444443 7899999999999
Q ss_pred CCchHHHHHHhhccCccccHHHHHH-HHHHh---CCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 156 RDDKETIEKLKEKKLAPITYPQGLS-MAKEI---GAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+... .+.++... +.+.+ +..+++++||++|.||+++|+.+.+.+.
T Consensus 305 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 305 VVHRE------------KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp STTGG------------GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCchh------------hHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 76421 22222222 22222 2358999999999999999999987654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-16 Score=138.77 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=89.3
Q ss_pred CCChhhhHHhhhhC---CCCCCCCc--eeeeccce-eEEE-------------c--C----eEEeeeeeeCCCCcccccC
Q psy8274 1 AVGKTCLLISYTTN---AFPGEYIP--TVFDNYSA-NVMV-------------D--G----KPINLGLWDTAGQEDYDRL 55 (228)
Q Consensus 1 gvGKTsli~~~~~~---~~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~~~i~D~~g~~~~~~~ 55 (228)
++|||||+++|++. .+..++.+ |+...|.. .+.. + + ....+.+||+||++.|...
T Consensus 18 d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 97 (408)
T 1s0u_A 18 DHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97 (408)
T ss_dssp TSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHH
Confidence 68999999999843 34444444 44322221 1111 1 1 1368999999999877543
Q ss_pred CCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC----hhhHHHHHH
Q psy8274 56 RPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN----PASFENVRA 131 (228)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~----~~s~~~~~~ 131 (228)
.......+ |++++|+|+++ +.+++.+.
T Consensus 98 ~~~~~~~~------------------------------------------------D~~ilVvda~~g~~~~qt~e~l~- 128 (408)
T 1s0u_A 98 MLSGASLM------------------------------------------------DGAILVIAANEPCPQPQTKEHLM- 128 (408)
T ss_dssp HHTTCSCC------------------------------------------------SEEEEEEETTSCSSCHHHHHHHH-
T ss_pred HHHhHhhC------------------------------------------------CEEEEEEECCCCCCCchhHHHHH-
Confidence 33333333 99999999995 45555543
Q ss_pred hhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCceEEEecccCCCCHHHHHHHHH
Q psy8274 132 KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVKYLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 132 ~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~evSa~~~~~v~~lf~~l~ 209 (228)
.+... ...|+++|+||+|+..... .....++...+++.. ...+++++||++|.|++++++.+.
T Consensus 129 ----~~~~l-~~~~iivv~NK~Dl~~~~~----------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 193 (408)
T 1s0u_A 129 ----ALEIL-GIDKIIIVQNKIDLVDEKQ----------AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ 193 (408)
T ss_dssp ----HHHHT-TCCCEEEEEECTTSSCTTT----------TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred ----HHHHc-CCCeEEEEEEccCCCCHHH----------HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 22222 2358999999999986421 112334555565542 125899999999999999999999
Q ss_pred HHhcCCC
Q psy8274 210 RAVLCPV 216 (228)
Q Consensus 210 ~~i~~~~ 216 (228)
..+..+.
T Consensus 194 ~~i~~~~ 200 (408)
T 1s0u_A 194 DFIPTPK 200 (408)
T ss_dssp HHSCCCC
T ss_pred HhCCCCc
Confidence 8776543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=135.03 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCChhhhHHhhhhCCCCC--CCCceeeeccceeEEEcCeEEeeeeeeCCCCc-c--------cccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPINLGLWDTAGQE-D--------YDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||++++++..+.. ....|........+..+ ...+.+|||||.. . +.......+..+
T Consensus 18 nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~------ 89 (301)
T 1ega_A 18 NVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV------ 89 (301)
T ss_dssp SSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE------
T ss_pred CCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcC------
Confidence 799999999999876531 11112221111222223 3578899999987 2 222233334444
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
|++++|+|+++ +....+.+...+.. .+.|+++|
T Consensus 90 ------------------------------------------D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilv 122 (301)
T 1ega_A 90 ------------------------------------------ELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILA 122 (301)
T ss_dssp ------------------------------------------EEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEE
T ss_pred ------------------------------------------CEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEE
Confidence 99999999977 33333122333332 36899999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+||+|+..... ...+....+.+.+++..++++||+++.|++++++.+...+.
T Consensus 123 lNK~D~~~~~~------------~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 123 VNKVDNVQEKA------------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp EESTTTCCCHH------------HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred EECcccCccHH------------HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 99999986211 12233455656667557999999999999999999988664
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=142.54 Aligned_cols=146 Identities=22% Similarity=0.142 Sum_probs=95.7
Q ss_pred CCChhhhHHhhhhCC-------CCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhc
Q psy8274 1 AVGKTCLLISYTTNA-------FPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIG 72 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 72 (228)
|+|||||+++|++.. +..+..+.+. +.....+.+++ ..+.+||+||++.|.......+..+
T Consensus 29 d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~a--------- 97 (482)
T 1wb1_A 29 DHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADII--------- 97 (482)
T ss_dssp TSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSC---------
T ss_pred CChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHhhC---------
Confidence 689999999999766 2223332221 11122344455 6789999999987755444444444
Q ss_pred chhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEE
Q psy8274 73 AVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILV 149 (228)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv 149 (228)
|++++|+|+++ +.+++.+. .+... ++|+++|
T Consensus 98 ---------------------------------------D~~ilVvda~~g~~~qt~e~l~-----~~~~~--~ip~Ivv 131 (482)
T 1wb1_A 98 ---------------------------------------DLALIVVDAKEGPKTQTGEHML-----ILDHF--NIPIIVV 131 (482)
T ss_dssp ---------------------------------------CEEEEEEETTTCSCHHHHHHHH-----HHHHT--TCCBCEE
T ss_pred ---------------------------------------CEEEEEEecCCCccHHHHHHHH-----HHHHc--CCCEEEE
Confidence 99999999998 55555442 33333 6888999
Q ss_pred EeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-C--CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 150 GTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-G--AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~--~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+||+|+.+.... ....++...+++.. + ..+++++||++|.|++++++.+...+.
T Consensus 132 iNK~Dl~~~~~~----------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 132 ITKSDNAGTEEI----------KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECTTSSCHHHH----------HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EECCCcccchhH----------HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 999999864221 11233455555544 2 258999999999999999999999774
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-17 Score=140.17 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=97.8
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
...+.+++||++||+.++.+|..+|+++ +++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a------------------------------------------------~~iI 189 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDV------------------------------------------------DCAI 189 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSC------------------------------------------------SEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccC------------------------------------------------CEEE
Confidence 3457899999999999999999999999 9999
Q ss_pred EEEecC----------ChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCchHHHHH----HhhccCccccHHHHH
Q psy8274 116 ICFSLV----------NPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDDKETIEK----LKEKKLAPITYPQGL 179 (228)
Q Consensus 116 ~v~Dvt----------~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~v~~~~~~ 179 (228)
+|||++ +..+|.... .|+..+.+. ..++|++|++||+|+...+-.... +..... ..+.+++.
T Consensus 190 fV~diS~ydq~l~e~~~~nr~~es~-~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g-~~~~e~a~ 267 (340)
T 4fid_A 190 FVTSLAEYDMKLYEDGNTSRLTESI-AVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTG-GDNAVMGA 267 (340)
T ss_dssp EEEEGGGTTCBCC--CCSBHHHHHH-HHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCC-TTCHHHHH
T ss_pred EEEECCccccccccccccchHHHHH-HHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcC-CCCHHHHH
Confidence 999999 788898887 677666654 257999999999998753210000 000111 12567776
Q ss_pred HHHHHhC--------------------------CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 180 SMAKEIG--------------------------AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 180 ~~~~~~~--------------------------~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.++.... .+.++++||++..||+.+|..+.+.|++
T Consensus 268 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 268 QYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 6654321 2578999999999999999999998875
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=144.58 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=98.0
Q ss_pred CCChhhhHHhhhhCC--CCCC-CCcee----------eecc-ce--eEEE---cCeEEeeeeeeCCCCcccccCCCCccc
Q psy8274 1 AVGKTCLLISYTTNA--FPGE-YIPTV----------FDNY-SA--NVMV---DGKPINLGLWDTAGQEDYDRLRPLSYP 61 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~~-~~~t~----------~~~~-~~--~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~ 61 (228)
|+|||||+++|+... +... ...+. +.+. .. .+.+ ++..+.+.+|||||+.+|...+...+.
T Consensus 14 d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~ 93 (599)
T 3cb4_D 14 DHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLA 93 (599)
T ss_dssp ----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHH
Confidence 689999999998632 2110 00111 1111 11 1222 566789999999999887655444444
Q ss_pred cccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC
Q psy8274 62 QTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC 141 (228)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~ 141 (228)
.+ |++++|+|++++.++.... .|...+.
T Consensus 94 ~a------------------------------------------------D~aILVVDa~~gv~~qt~~-~~~~~~~--- 121 (599)
T 3cb4_D 94 AC------------------------------------------------EGALLVVDAGQGVEAQTLA-NCYTAME--- 121 (599)
T ss_dssp HC------------------------------------------------SEEEEEEETTTCCCTHHHH-HHHHHHH---
T ss_pred HC------------------------------------------------CEEEEEEECCCCCCHHHHH-HHHHHHH---
Confidence 44 9999999999988877765 6655443
Q ss_pred CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 142 PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 142 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
.+.|+++|+||+|+.... .......+.+.+++ ..++++||++|.|++++|+++.+.+..+..
T Consensus 122 ~~ipiIvViNKiDl~~a~--------------~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 122 MDLEVVPVLNKIDLPAAD--------------PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp TTCEEEEEEECTTSTTCC--------------HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred CCCCEEEeeeccCccccc--------------HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 268999999999998642 11223445555563 248999999999999999999998876543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=125.92 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCChhhhHHhhhhCCCCC---CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|.++.+.. .+.+++...+ ..+.+.+||++|+..+...+..++... .
T Consensus 58 g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~-------~------ 116 (193)
T 2ged_A 58 NSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTR-------A------ 116 (193)
T ss_dssp TSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHH-------G------
T ss_pred CCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhh-------c------
Confidence 799999999999987643 2233332222 446889999999988876655544330 0
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHHHhhh-----CCCCCEEEEEe
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPEVRHH-----CPSTPIILVGT 151 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~l~~~-----~~~~piilv~n 151 (228)
..+|++++|||++ ++.+|..+. .|+..+... ..+.|+++|+|
T Consensus 117 -------------------------------~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 117 -------------------------------KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp -------------------------------GGEEEEEEEEETTCCHHHHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred -------------------------------ccCCEEEEEEECCCCchhHHHHH-HHHHHHHhhhhhccccCCCEEEEEE
Confidence 0019999999999 999999987 676665542 24799999999
Q ss_pred CCCCCCch
Q psy8274 152 KLDLRDDK 159 (228)
Q Consensus 152 K~Dl~~~~ 159 (228)
|+|+....
T Consensus 165 K~Dl~~~~ 172 (193)
T 2ged_A 165 KSELFTAR 172 (193)
T ss_dssp CTTSTTCC
T ss_pred chHhcCCC
Confidence 99998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-17 Score=144.34 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=82.0
Q ss_pred CCChhhhHHhhhh-CCCCCCCC--------ceeeecc-ceeEEEcCeEEeeeeeeCCCCcc-------cccCCCCccccc
Q psy8274 1 AVGKTCLLISYTT-NAFPGEYI--------PTVFDNY-SANVMVDGKPINLGLWDTAGQED-------YDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~-~~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 63 (228)
|+|||||++++.. +.+...+. +|++..+ ...+..++..+.+.+|||+|+.. +..++.
T Consensus 47 g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~------ 120 (361)
T 2qag_A 47 GLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS------ 120 (361)
T ss_dssp TSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHH------
T ss_pred CCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHH------
Confidence 7999999999764 44443332 4443322 33445567778999999999843 332222
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC-hhhHHHHHHhhHHHHhhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN-PASFENVRAKWYPEVRHHCP 142 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~-~~s~~~~~~~~~~~l~~~~~ 142 (228)
.+ .+.|....+...+..-. .....++.+++|++++ ..++..+...|+..+ ..
T Consensus 121 --~i--------------------~~~~~~yl~~~~~~~r~--~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~ 173 (361)
T 2qag_A 121 --YI--------------------DEQFERYLHDESGLNRR--HIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HN 173 (361)
T ss_dssp --HH--------------------HHHHHHHHHHHTCSCCC---CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS
T ss_pred --HH--------------------HHHHHHHHHHhhhhccc--cccCCceEEEEEEEecCCCCcchhHHHHHHHh---cc
Confidence 00 00000000110000000 0111134456677765 566766653455444 35
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccH--HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITY--PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
++|+|+|+||+|+....+ +.. +++..+++.++ ++++++||+++.+ ++.|.++.+.+....|
T Consensus 174 ~~piIlV~NK~Dl~~~~e------------v~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLKE------------RERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp -SCEEEEEECCSSSCHHH------------HHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCS
T ss_pred CCCEEEEEECCCCCCHHH------------HHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 799999999999987543 222 45667777778 4899999999999 8888888888765544
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=142.61 Aligned_cols=116 Identities=18% Similarity=0.230 Sum_probs=87.0
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
++..+.+.+|||||+.+|.......+..+ |++
T Consensus 69 dg~~~~inliDTPGh~dF~~ev~r~l~~a------------------------------------------------D~a 100 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYEVSRALAAC------------------------------------------------EGA 100 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHHHHHHHHTC------------------------------------------------SEE
T ss_pred CCCeEEEEEEECCCcHhHHHHHHHHHHhC------------------------------------------------CEE
Confidence 56678999999999998765444334444 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC--ceEEE
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--VKYLE 192 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~e 192 (228)
++|+|++++.++.... .|..... .+.|+++|+||+|+..... ......+.+.+++ ..+++
T Consensus 101 ILVVDa~~gv~~qt~~-~~~~a~~---~~ipiIvviNKiDl~~a~~--------------~~v~~el~~~lg~~~~~vi~ 162 (600)
T 2ywe_A 101 LLLIDASQGIEAQTVA-NFWKAVE---QDLVIIPVINKIDLPSADV--------------DRVKKQIEEVLGLDPEEAIL 162 (600)
T ss_dssp EEEEETTTBCCHHHHH-HHHHHHH---TTCEEEEEEECTTSTTCCH--------------HHHHHHHHHTSCCCGGGCEE
T ss_pred EEEEECCCCccHHHHH-HHHHHHH---CCCCEEEEEeccCccccCH--------------HHHHHHHHHhhCCCcccEEE
Confidence 9999999988887776 6655443 2689999999999976421 1123344455553 24899
Q ss_pred ecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 193 CSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 193 vSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+||++|.||+++|+++++.+..+.
T Consensus 163 vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 163 ASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred EEeecCCCchHHHHHHHHhccccc
Confidence 999999999999999999887654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-16 Score=135.77 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=60.8
Q ss_pred ceEEEEEecCC----hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--
Q psy8274 112 DVFQICFSLVN----PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-- 185 (228)
Q Consensus 112 d~vi~v~Dvt~----~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 185 (228)
|++++|+|+++ +.+++.+. .+... ...|+++|+||+|+....... ...++...+.+..
T Consensus 108 D~~ilVvda~~g~~~~qt~e~l~-----~~~~~-~~~~iivviNK~Dl~~~~~~~----------~~~~~i~~~l~~~~~ 171 (410)
T 1kk1_A 108 DGAILVIAANEPCPRPQTREHLM-----ALQII-GQKNIIIAQNKIELVDKEKAL----------ENYRQIKEFIEGTVA 171 (410)
T ss_dssp SEEEEEEETTSCSSCHHHHHHHH-----HHHHH-TCCCEEEEEECGGGSCHHHHH----------HHHHHHHHHHTTSTT
T ss_pred CEEEEEEECCCCCCChhHHHHHH-----HHHHc-CCCcEEEEEECccCCCHHHHH----------HHHHHHHHHHHhcCc
Confidence 99999999995 44555443 22222 235899999999998753211 1223344454431
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
...+++++||++|.|++++++.+...+..+.
T Consensus 172 ~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 172 ENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 2258999999999999999999998776543
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.9e-16 Score=127.61 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=93.5
Q ss_pred CCChhhhHHhhhhCC-CCCCCCce-e-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNA-FPGEYIPT-V-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+++|++.. +...+.++ + .......+..++ ..+.+|||||+..+......+. +.+.
T Consensus 32 g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~--------~~i~----- 96 (260)
T 2xtp_A 32 GTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALY--------KEVQ----- 96 (260)
T ss_dssp TSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHH--------HHHH-----
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHH--------HHHH-----
Confidence 799999999999876 55444444 2 222334455555 4688999999876543211100 0000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEe-CC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGT-KL 153 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~n-K~ 153 (228)
...... ...+|++++|||+++...... .+...+..... ..|+++|.| |+
T Consensus 97 ---------------~~~~~~---------~~~~d~il~V~d~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~vv~nK~ 149 (260)
T 2xtp_A 97 ---------------RCYLLS---------APGPHVLLLVTQLGRYTSQDQ---QAAQRVKEIFGEDAMGHTIVLFTHKE 149 (260)
T ss_dssp ---------------HHHHHH---------TTCCSEEEEEEETTCCCHHHH---HHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred ---------------HHHHhc---------CCCCcEEEEEEeCCCCCHHHH---HHHHHHHHHhCchhhccEEEEEEccc
Confidence 000000 012299999999986222211 22333333321 345555555 99
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce--E--EEecccCCCCHHHHHHHHHHHhcC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK--Y--LECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~--~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
|+.... ..+. ... ....++..+++.++... + +++||+++.|++++|.++.+.+..
T Consensus 150 Dl~~~~-~~~~-i~~----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 150 DLNGGS-LMDY-MHD----SDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGTTCC-HHHH-HHH----CCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcc-HHHH-HHh----cchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 998531 1110 000 11134555666665211 2 789999999999999999987754
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-16 Score=144.28 Aligned_cols=146 Identities=16% Similarity=0.279 Sum_probs=95.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+++|....+.....+.+.... ...+..++ ..+.+|||||++.|..++...+..+
T Consensus 14 d~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~a---------------- 75 (501)
T 1zo1_I 14 DHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQAT---------------- 75 (501)
T ss_dssp TSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSC----------------
T ss_pred CCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhC----------------
Confidence 6899999999997766544333332111 22233344 4688999999999988887777766
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.
T Consensus 76 --------------------------------D~aILVVda~~g~~~qT~e~l~-----~~~~--~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 76 --------------------------------DIVVLVVAADDGVMPQTIEAIQ-----HAKA--AQVPVVVAVNKIDKP 116 (501)
T ss_dssp --------------------------------SSEEEEEETTTBSCTTTHHHHH-----HHHH--TTCCEEEEEECSSSS
T ss_pred --------------------------------CEEEEEeecccCccHHHHHHHH-----HHHh--cCceEEEEEEecccc
Confidence 99999999988 44444332 2222 368999999999997
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
..... + . ...... ...+++.++ ..+++++||++|.|++++|+++...
T Consensus 117 ~~~~~-~-v----~~~l~~--~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 117 EADPD-R-V----KNELSQ--YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCCC-C-T----TCCCCC--CCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ccCHH-H-H----HHHHHH--hhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 53110 0 0 000000 000112222 2589999999999999999998764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=134.87 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=99.5
Q ss_pred CCChhhhHHhhhhC--------CCCCCC--C-----ceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLISYTTN--------AFPGEY--I-----PTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~~~~~~--------~~~~~~--~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|+|||||+++|+.. .|.... . .+.+.+. .....++.....+.+|||||+++|.......+..+
T Consensus 21 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~a- 99 (405)
T 2c78_A 21 DHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQM- 99 (405)
T ss_dssp TSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHC-
Confidence 69999999999973 221100 0 0111111 12233444456789999999998754444444444
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST 144 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~ 144 (228)
|++|+|+|++++...... .|+..+... ++
T Consensus 100 -----------------------------------------------D~~ilVvda~~g~~~qt~--~~l~~~~~~--~i 128 (405)
T 2c78_A 100 -----------------------------------------------DGAILVVSAADGPMPQTR--EHILLARQV--GV 128 (405)
T ss_dssp -----------------------------------------------SSEEEEEETTTCCCHHHH--HHHHHHHHT--TC
T ss_pred -----------------------------------------------CEEEEEEECCCCCcHHHH--HHHHHHHHc--CC
Confidence 999999999987654432 455555544 67
Q ss_pred C-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCCCC------------------H
Q psy8274 145 P-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQKG------------------L 201 (228)
Q Consensus 145 p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~~~------------------v 201 (228)
| +++|+||+|+.......+ ...++...+++.+++ .+++++||++|.| +
T Consensus 129 p~iivviNK~Dl~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i 199 (405)
T 2c78_A 129 PYIVVFMNKVDMVDDPELLD---------LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKI 199 (405)
T ss_dssp CCEEEEEECGGGCCCHHHHH---------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHH
T ss_pred CEEEEEEECccccCcHHHHH---------HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccH
Confidence 8 889999999985322111 122355667777764 5899999999987 7
Q ss_pred HHHHHHHHHHhcCC
Q psy8274 202 KTVFDEAIRAVLCP 215 (228)
Q Consensus 202 ~~lf~~l~~~i~~~ 215 (228)
.++++.+...+..+
T Consensus 200 ~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 200 WELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhcCCC
Confidence 78888887766543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=131.04 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=97.7
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|+|||||+|++++..+.. .+..+..+.....+.+++. .+.+|||+|.....+ ... +. .
T Consensus 189 naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp--~~l-------ve-~--------- 247 (364)
T 2qtf_A 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIP--PQI-------VD-A--------- 247 (364)
T ss_dssp TSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCC--GGG-------HH-H---------
T ss_pred CCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCC--HHH-------HH-H---------
Confidence 799999999999876532 2333334455667788884 568999999632110 000 00 0
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh--hHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA--SFENVRAKWYPEVRHHC-PSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~--s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~ 156 (228)
|...... ...+|++++|+|++++. +...+. .|...+.... .+.|+++|+||+|+.
T Consensus 248 -----------f~~tl~~----------~~~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 248 -----------FFVTLSE----------AKYSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp -----------HHHHHHG----------GGGSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred -----------HHHHHHH----------HHhCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 0000000 01129999999999877 555554 5666666543 478999999999987
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHh-C-CceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEI-G-AVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..... .....+..+++.+ . ..+++++||+++.|++++++.+.+.+..+
T Consensus 306 ~~~~~-----------~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 306 NGDLY-----------KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCHH-----------HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CchHH-----------HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 63210 0012233444555 2 13689999999999999999998877543
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-16 Score=139.81 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=54.3
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
.+.+.+|||||+.+|......+++.+ |++++|
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~allV 112 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTLTAV------------------------------------------------DSALMV 112 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGC------------------------------------------------SEEEEE
T ss_pred CEEEEEEECCCchhHHHHHHHHHHhC------------------------------------------------CEEEEE
Confidence 46789999999998877666666666 999999
Q ss_pred EecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 118 FSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 118 ~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|+++..+..... ++..+... ++|+++|+||+|+...
T Consensus 113 vDa~~g~~~~t~~--~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 113 IDAAKGVEPRTIK--LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp EETTTCSCHHHHH--HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred EeCCCCCCHHHHH--HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9999987777664 33444444 6899999999999753
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=133.28 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=98.6
Q ss_pred CCChhhhHHhhhhC-------CCCCC-----------CCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcccc
Q psy8274 1 AVGKTCLLISYTTN-------AFPGE-----------YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQ 62 (228)
Q Consensus 1 gvGKTsli~~~~~~-------~~~~~-----------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 62 (228)
|+|||||+++|+.. .|... .-.|+.. ....++.....+.+|||||++.|.......+..
T Consensus 13 ~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~---~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~ 89 (397)
T 1d2e_A 13 DHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA---AHVEYSTAARHYAHTDCPGHADYVKNMITGTAP 89 (397)
T ss_dssp TSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC---EEEEEECSSCEEEEEECSSHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe---eeEEeccCCeEEEEEECCChHHHHHHHHhhHhh
Confidence 68999999999964 12110 0012111 112334444678899999998876544444555
Q ss_pred ccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC
Q psy8274 63 TGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP 142 (228)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~ 142 (228)
+ |++|+|+|+++....+... .| ..+...
T Consensus 90 a------------------------------------------------D~~ilVvda~~g~~~qt~e-~l-~~~~~~-- 117 (397)
T 1d2e_A 90 L------------------------------------------------DGCILVVAANDGPMPQTRE-HL-LLARQI-- 117 (397)
T ss_dssp C------------------------------------------------SEEEEEEETTTCSCHHHHH-HH-HHHHHT--
T ss_pred C------------------------------------------------CEEEEEEECCCCCCHHHHH-HH-HHHHHc--
Confidence 5 9999999999865444332 33 344333
Q ss_pred CCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCCCC----------HHHHHHH
Q psy8274 143 STP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQKG----------LKTVFDE 207 (228)
Q Consensus 143 ~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~~~----------v~~lf~~ 207 (228)
++| +++|+||+|+....+..+ ...++...+++.+++ .+++++||++|.| +.++|+.
T Consensus 118 ~vp~iivviNK~Dl~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~ 188 (397)
T 1d2e_A 118 GVEHVVVYVNKADAVQDSEMVE---------LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDA 188 (397)
T ss_dssp TCCCEEEEEECGGGCSCHHHHH---------HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHH
T ss_pred CCCeEEEEEECcccCCCHHHHH---------HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHH
Confidence 678 789999999985322111 123456677777764 5899999999765 8899999
Q ss_pred HHHHhcCC
Q psy8274 208 AIRAVLCP 215 (228)
Q Consensus 208 l~~~i~~~ 215 (228)
+...+..+
T Consensus 189 l~~~~p~p 196 (397)
T 1d2e_A 189 VDTYIPVP 196 (397)
T ss_dssp HHHHSCCC
T ss_pred HHHhCCCC
Confidence 98877644
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=136.83 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCChhhhHHhhhhCCCCCCC----Cceeeeccce-------------eEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEY----IPTVFDNYSA-------------NVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~----~~t~~~~~~~-------------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|++..+.... .++++..+.. .+.++.....+.+|||||++.|..++...+..+
T Consensus 15 d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~a 94 (594)
T 1g7s_A 15 DHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALA 94 (594)
T ss_dssp TSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSC
T ss_pred CCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhC
Confidence 79999999999976543211 1122221110 000001112489999999999988888777777
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC---hhhHHHHHHhhHHHHhhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN---PASFENVRAKWYPEVRHH 140 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~---~~s~~~~~~~~~~~l~~~ 140 (228)
|++|+|||+++ +.++..+. .+...
T Consensus 95 ------------------------------------------------D~aILVvDa~~Gv~~qT~e~l~-----~l~~~ 121 (594)
T 1g7s_A 95 ------------------------------------------------DLAILIVDINEGFKPQTQEALN-----ILRMY 121 (594)
T ss_dssp ------------------------------------------------SEEEEEEETTTCCCHHHHHHHH-----HHHHT
T ss_pred ------------------------------------------------CEEEEEEECCCCccHhHHHHHH-----HHHHc
Confidence 99999999999 77776553 23333
Q ss_pred CCCCCEEEEEeCCCCCCchH------HHHHHhhccCcccc------HHHHHHHHHHhC--------------CceEEEec
Q psy8274 141 CPSTPIILVGTKLDLRDDKE------TIEKLKEKKLAPIT------YPQGLSMAKEIG--------------AVKYLECS 194 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~~~------~~~~~~~~~~~~v~------~~~~~~~~~~~~--------------~~~~~evS 194 (228)
++|+++|+||+|+..... ..+..... ...+. ..+......+.+ ..+++++|
T Consensus 122 --~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~-~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vS 198 (594)
T 1g7s_A 122 --RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ-DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPIS 198 (594)
T ss_dssp --TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECC
T ss_pred --CCeEEEEecccccccccccccCCchHHHHHHh-HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEe
Confidence 689999999999964210 00000000 00000 001111111222 24899999
Q ss_pred ccCCCCHHHHHHHHHHHhc
Q psy8274 195 ALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 195 a~~~~~v~~lf~~l~~~i~ 213 (228)
|++|.|++++++++...+.
T Consensus 199 A~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 199 AITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHhhcc
Confidence 9999999999999988664
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=134.18 Aligned_cols=113 Identities=18% Similarity=0.191 Sum_probs=72.1
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.+|||||+++|.......+..+ |++++|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~a------------------------------------------------D~~ilV 125 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQA------------------------------------------------DLAVLV 125 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhC------------------------------------------------CEEEEE
Confidence 35889999999998876555555555 999999
Q ss_pred EecCChhh---HHHHH--HhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----
Q psy8274 118 FSLVNPAS---FENVR--AKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA---- 187 (228)
Q Consensus 118 ~Dvt~~~s---~~~~~--~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 187 (228)
+|+++... |.... ...+..+.. .++| +++|+||+|+.......+. .....++...+++.+|+
T Consensus 126 VDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~~~------~~~i~~~~~~~l~~~g~~~~~ 197 (439)
T 3j2k_7 126 ISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSNER------YEECKEKLVPFLKKVGFNPKK 197 (439)
T ss_pred EECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHHHH------HHHHHHHHHHHHHHhcccccC
Confidence 99998532 11100 011122222 2566 9999999999643111000 11223445566666653
Q ss_pred -ceEEEecccCCCCHHHHHH
Q psy8274 188 -VKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 188 -~~~~evSa~~~~~v~~lf~ 206 (228)
.+++++||++|.|++++++
T Consensus 198 ~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 198 DIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeeEEEeeccCCcccccccc
Confidence 4799999999999999654
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-16 Score=139.03 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=79.9
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
+.....+.+|||||+++|.......+..+ |++
T Consensus 80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~a------------------------------------------------D~~ 111 (435)
T 1jny_A 80 ETKKYFFTIIDAPGHRDFVKNMITGASQA------------------------------------------------DAA 111 (435)
T ss_dssp ECSSCEEEECCCSSSTTHHHHHHHTSSCC------------------------------------------------SEE
T ss_pred ecCCeEEEEEECCCcHHHHHHHHhhhhhc------------------------------------------------CEE
Confidence 34456899999999999876655556666 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhC-----CC-CCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC-
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHC-----PS-TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA- 187 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 187 (228)
|+|+|+++ .+|+.+. .|......+. .+ .|+++|+||+|+.+.....+. .....+++..+++.+++
T Consensus 112 ilVvDa~~-gsfe~~~-~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~------~~~~~~~i~~~~~~~~~~ 183 (435)
T 1jny_A 112 ILVVSAKK-GEYEAGM-SVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR------YKEIVDQVSKFMRSYGFN 183 (435)
T ss_dssp EEEEECST-THHHHHH-STTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH------HHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCC-Ccccccc-ccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH------HHHHHHHHHHHHHHcCCC
Confidence 99999998 7787665 4544433321 13 468999999999863100000 01223556777777763
Q ss_pred ---ceEEEecccCCCCHHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf~ 206 (228)
.+++++||++|.|+.+++.
T Consensus 184 ~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 184 TNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CTTCEEEECBTTTTBTTTBCCS
T ss_pred cCCceEEEeecccCcccccccc
Confidence 5799999999999986543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=125.37 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=85.5
Q ss_pred CCChhhhHHhhhhC-CCCCCC-------Cceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTN-AFPGEY-------IPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~-~~~~~~-------~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|+|||||+|+++.. .+...+ .+|++.. +...+..++..+.+.+|||||.......... +......
T Consensus 18 g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~-~~~i~~~----- 91 (274)
T 3t5d_A 18 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC-WQPVIDY----- 91 (274)
T ss_dssp TSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT-THHHHHH-----
T ss_pred CCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh-HHHHHHH-----
Confidence 79999999997654 444444 4555332 3344445676789999999998654221111 1100000
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEe
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGT 151 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~n 151 (228)
+.+-|....+.-....-....-.++|+++++.+.+.. ++......++..+.. ++|+++|+|
T Consensus 92 ---------------i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~---~~pvi~V~n 152 (274)
T 3t5d_A 92 ---------------IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE---KVNIIPLIA 152 (274)
T ss_dssp ---------------HHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT---TSCEEEEES
T ss_pred ---------------HHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc---cCCEEEEEe
Confidence 0001111111111111111122345889999877652 222222245555554 799999999
Q ss_pred CCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 152 KLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 152 K~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
|+|+....+.. .............+ ++++++||+++.|+++++.++.+.+.
T Consensus 153 K~D~~~~~e~~----------~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 153 KADTLTPEECQ----------QFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp SGGGSCHHHHH----------HHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCS
T ss_pred ccCCCCHHHHH----------HHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 99997653311 11223445555677 58999999999999999999988653
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=132.58 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=72.7
Q ss_pred eEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEE
Q psy8274 37 KPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQI 116 (228)
Q Consensus 37 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 116 (228)
....+.+|||||++.|.......+..+ |++|+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~a------------------------------------------------D~~il 133 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTC------------------------------------------------DLAII 133 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTC------------------------------------------------SEEEE
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhC------------------------------------------------CEEEE
Confidence 346789999999988765444444444 99999
Q ss_pred EEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch-HHHHHHhhccCccccHHHHHHHHHHhC--C--ceEE
Q psy8274 117 CFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK-ETIEKLKEKKLAPITYPQGLSMAKEIG--A--VKYL 191 (228)
Q Consensus 117 v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~--~--~~~~ 191 (228)
|+|++++...... .++..+... ...|+++|+||+|+.+.. +..+ ...++...+++.++ . .+++
T Consensus 134 VvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~---------~i~~~~~~~~~~~g~~~~~~~~i 201 (434)
T 1zun_B 134 LVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDERVFE---------SIKADYLKFAEGIAFKPTTMAFV 201 (434)
T ss_dssp EEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHH---------HHHHHHHHHHHTTTCCCSEEEEE
T ss_pred EEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHH---------HHHHHHHHHHHHhCCCccCceEE
Confidence 9999986543332 344344333 223699999999998631 1111 12345666777776 1 5799
Q ss_pred EecccCCCCHHHH
Q psy8274 192 ECSALTQKGLKTV 204 (228)
Q Consensus 192 evSa~~~~~v~~l 204 (228)
++||++|.|++++
T Consensus 202 ~vSA~~g~gi~~~ 214 (434)
T 1zun_B 202 PMSALKGDNVVNK 214 (434)
T ss_dssp ECCTTTCTTTSSC
T ss_pred EEeccCCCCcccc
Confidence 9999999999984
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-16 Score=138.56 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=83.2
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcc--------cccCCCCccccccchhHHh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQED--------YDRLRPLSYPQTGLSMAKE 70 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~~~~~ 70 (228)
|||||||+|+|++..+. .++..+..+.. ...++.....+.+|||+|... +......++..+
T Consensus 33 nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~--~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a------- 103 (456)
T 4dcu_A 33 NVGKSTIFNRIAGERISIVEDTPGVTRDRI--YSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA------- 103 (456)
T ss_dssp SSSHHHHHHHHEEEEEC-----------CE--EEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC-------
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcceeEE--EEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC-------
Confidence 79999999999987653 12222222222 223333446889999999542 111111112222
Q ss_pred hcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 71 IGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
|++|+|+|..+..+.... .+...+++ .+.|++||+
T Consensus 104 -----------------------------------------d~il~VvD~~~~~~~~d~--~l~~~l~~--~~~pvilV~ 138 (456)
T 4dcu_A 104 -----------------------------------------DVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAV 138 (456)
T ss_dssp -----------------------------------------SEEEEEEESSSCSCHHHH--HHHHHHTT--CCSCEEEEE
T ss_pred -----------------------------------------CEEEEEEeCCCCCChHHH--HHHHHHHH--cCCCEEEEE
Confidence 999999998875544432 34444444 379999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
||+|+..... +...+ ..+|+...+++||++|.|+.++|+++.+.+..
T Consensus 139 NK~D~~~~~~----------------~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 139 NKLDNTEMRA----------------NIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp ECC-------------------------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred ECccchhhhh----------------hHHHH-HHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 9999875311 00111 12344467899999999999999999987754
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=137.09 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=70.1
Q ss_pred EEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCc
Q psy8274 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCD 112 (228)
Q Consensus 33 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d 112 (228)
.++.....+.+|||||++.|.......+..+ |
T Consensus 105 ~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~a------------------------------------------------D 136 (483)
T 3p26_A 105 HFSTHRANFTIVDAPGHRDFVPNAIMGISQA------------------------------------------------D 136 (483)
T ss_dssp EEECSSCEEEEECCCCCGGGHHHHHHHHTTC------------------------------------------------S
T ss_pred EEecCCceEEEEECCCcHHHHHHHHHhhhhC------------------------------------------------C
Confidence 3444557899999999998876665555655 9
Q ss_pred eEEEEEecCChhhHHHH-----HHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhC
Q psy8274 113 VFQICFSLVNPASFENV-----RAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIG 186 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~-----~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (228)
++|+|+|++++.++..+ ....+..+ ......|++||+||+|+.+... ..+ ...++...+...+|
T Consensus 137 ~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~~~~~iIvviNK~Dl~~~~~~~~~---------~i~~~~~~~l~~~g 206 (483)
T 3p26_A 137 MAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLGIHNLIIAMNKMDNVDWSQQRFE---------EIKSKLLPYLVDIG 206 (483)
T ss_dssp EEEEEEECCC------CCCCHHHHHHHHHH-HHTTCCCEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHHHHT
T ss_pred EEEEEEECCCCccccccchhhhHHHHHHHH-HHcCCCcEEEEEECcCcccchHHHHH---------HHHHHHHHHHHHcC
Confidence 99999999997654321 10111122 2223357999999999986321 111 11223444555554
Q ss_pred C----ceEEEecccCCCCHHH
Q psy8274 187 A----VKYLECSALTQKGLKT 203 (228)
Q Consensus 187 ~----~~~~evSa~~~~~v~~ 203 (228)
+ .+++++||++|.|+++
T Consensus 207 ~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 207 FFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCGGGEEEEECCSSSCTTSSS
T ss_pred CCcccceEEEEeeecCCCccc
Confidence 3 5799999999999985
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.6e-15 Score=117.54 Aligned_cols=162 Identities=11% Similarity=0.013 Sum_probs=89.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++++++..+...+.++.+.... ..+.+++ .+.+||++|...... .... ...+...
T Consensus 36 g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~-~~~~----~~~~~~~--------- 98 (210)
T 1pui_A 36 NAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEV-PEEM----KRKWQRA--------- 98 (210)
T ss_dssp TSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-------CC----HHHHHHH---------
T ss_pred CCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCccccc-CHHH----HHHHHHH---------
Confidence 79999999999987765555666654432 3334444 578999999754210 0000 0000000
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+...+.. ...++++++++|++++.++... .+...+.. ...|+++|+||+|+....
T Consensus 99 -------~~~~~~~--------------~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 99 -------LGEYLEK--------------RQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASG 153 (210)
T ss_dssp -------HHHHHHH--------------CTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHH
T ss_pred -------HHHHHHh--------------hhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCch
Confidence 0000000 0112999999999987766432 22222332 268999999999987643
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +......+..++...+ ...++++||+++.|++++++.+.+.+..
T Consensus 154 ~----------~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 154 A----------RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp H----------HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred h----------HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 2 1112334555555554 3578899999999999999999887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-15 Score=120.30 Aligned_cols=165 Identities=13% Similarity=-0.011 Sum_probs=91.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCce--e-eeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPT--V-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t--~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||++++++..+.....++ + .......+.+++ ..+.+|||||....... ...
T Consensus 39 g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~--------~~~----------- 97 (239)
T 3lxx_A 39 GAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVP--------NAE----------- 97 (239)
T ss_dssp TSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-------------CHH-----------
T ss_pred CCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCC--------HHH-----------
Confidence 79999999999998876554442 2 222234455566 46789999996542210 000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC---CCCCEEEEEeCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC---PSTPIILVGTKLD 154 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~---~~~piilv~nK~D 154 (228)
+.+.+....... ...+|++|+|+|+++...-+ . .|+..+.... ...|++||+||+|
T Consensus 98 ---------~~~~~~~~~~~~---------~~~~~~~l~v~d~~~~~~~~-~--~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 98 ---------TSKEIIRCILLT---------SPGPHALLLVVPLGRYTEEE-H--KATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp ---------HHHHHHHHHHHT---------TTCCSEEEEEEETTCCSSHH-H--HHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred ---------HHHHHHHHHHhc---------CCCCcEEEEEeeCCCCCHHH-H--HHHHHHHHHhhhhccceEEEEEeCCc
Confidence 000011111110 01239999999997644421 1 3444443321 2369999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC-----CCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ-----KGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~-----~~v~~lf~~l~~~i~~ 214 (228)
+.......+. .....+.+..+++.++. .++.++...+ .+|.++|..+...+..
T Consensus 157 ~~~~~~~~~~------i~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 157 DLGDTNLHDY------LREAPEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GC------------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHH------HHhchHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8765321111 00112467888888884 7888876643 6899999988877643
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-15 Score=130.70 Aligned_cols=140 Identities=8% Similarity=-0.054 Sum_probs=89.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|+|||||+++|+ .+-.|+...+ ..+......+.+|||||+++|.......+..+
T Consensus 31 d~GKSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~a----------------- 84 (370)
T 2elf_A 31 KSGRTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNIS----------------- 84 (370)
T ss_dssp TSSHHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTC-----------------
T ss_pred CCCHHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHC-----------------
Confidence 689999999998 1222322111 12333345699999999988753333233333
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEe-CCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGT-KLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~n-K~Dl~~~ 158 (228)
|++|+|+| ++. .+.... .++..+... ++|. ++++| |+|+ +.
T Consensus 85 -------------------------------D~ailVvd-~~g-~~~qt~-e~~~~~~~~--~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 85 -------------------------------DIAVLCIP-PQG-LDAHTG-ECIIALDLL--GFKHGIIALTRSDST-HM 127 (370)
T ss_dssp -------------------------------SEEEEEEC-TTC-CCHHHH-HHHHHHHHT--TCCEEEEEECCGGGS-CH
T ss_pred -------------------------------CEEEEEEc-CCC-CcHHHH-HHHHHHHHc--CCCeEEEEEEeccCC-CH
Confidence 99999999 543 333333 455455444 5777 88888 9999 53
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhC--CceEEE--ecccC---CCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIG--AVKYLE--CSALT---QKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e--vSa~~---~~~v~~lf~~l~~~i~ 213 (228)
... + ...++...+++.++ ..++++ +||++ +.|++++++.+.+.+.
T Consensus 128 ~~~-~---------~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 128 HAI-D---------ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp HHH-H---------HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred HHH-H---------HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 211 1 01234444444433 258999 99999 9999999999987654
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-15 Score=135.73 Aligned_cols=109 Identities=20% Similarity=0.181 Sum_probs=65.1
Q ss_pred EeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEE
Q psy8274 39 INLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118 (228)
Q Consensus 39 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~ 118 (228)
..+.+|||||++.|.......+..+ |++|+|+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~a------------------------------------------------D~~ilVv 152 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQA------------------------------------------------DIGVLVI 152 (467)
T ss_dssp EEEEECCCCC-----------TTSC------------------------------------------------SEEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhcccC------------------------------------------------CEEEEEE
Confidence 5789999999999887666666666 9999999
Q ss_pred ecCCh---hhHHHHHHhhHHHHhhh-CCCCC-EEEEEeCCCCCCc---hHHHHHHhhccCccccHHHHHHHHHHh-CC--
Q psy8274 119 SLVNP---ASFENVRAKWYPEVRHH-CPSTP-IILVGTKLDLRDD---KETIEKLKEKKLAPITYPQGLSMAKEI-GA-- 187 (228)
Q Consensus 119 Dvt~~---~s~~~~~~~~~~~l~~~-~~~~p-iilv~nK~Dl~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-- 187 (228)
|+++. .||+... ++...+... ..++| ++||+||+|+... .+.. .....+...+++.+ |+
T Consensus 153 Da~~g~~e~sf~~~~-qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~---------~~i~~e~~~~l~~~~g~~~ 222 (467)
T 1r5b_A 153 SARRGEFEAGFERGG-QTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY---------KECVDKLSMFLRRVAGYNS 222 (467)
T ss_dssp ECSTTHHHHTTSTTC-CHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH---------HHHHHHHHHHHHHHHCCCH
T ss_pred eCCcCccccccCCCC-cHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH---------HHHHHHHHHHHHHhcCCCc
Confidence 99986 3443222 232222221 13577 9999999999642 1111 12233456666665 42
Q ss_pred ---ceEEEecccCCCCHHHHH
Q psy8274 188 ---VKYLECSALTQKGLKTVF 205 (228)
Q Consensus 188 ---~~~~evSa~~~~~v~~lf 205 (228)
.+++++||++|.|+.++|
T Consensus 223 ~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 223 KTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHEEEEECBTTTTBTTSSCC
T ss_pred cCCceEEeccccccccccccc
Confidence 469999999999998765
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=131.96 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=71.7
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
.....+.+|||||++.|.......+..+ |++|
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~a------------------------------------------------D~~l 273 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAIMGISQA------------------------------------------------DMAI 273 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHTTTSSCC------------------------------------------------SEEE
T ss_pred cCCceEEEEECCCCcccHHHHHHHHhhc------------------------------------------------CceE
Confidence 3446889999999998877766667777 9999
Q ss_pred EEEecCChh---hHH--HHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH-HHHHHhhccCccccHHHHHHHHHHhCC--
Q psy8274 116 ICFSLVNPA---SFE--NVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE-TIEKLKEKKLAPITYPQGLSMAKEIGA-- 187 (228)
Q Consensus 116 ~v~Dvt~~~---s~~--~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 187 (228)
+|+|++++. +|. ......+..+.. ....|++||+||+|+..... ..+ ....+...+...+|+
T Consensus 274 lVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~~~~~~~~---------ei~~~l~~~l~~~g~~~ 343 (611)
T 3izq_1 274 LCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVDWSQQRFE---------EIKSKLLPYLVDIGFFE 343 (611)
T ss_dssp EEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTTTCHHHHH---------HHHHHHHHHHHHHTCCG
T ss_pred EEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccchhHHHHH---------HHHHHHHHHHHhhcccc
Confidence 999998742 110 000011112221 12245999999999986311 111 112345556666553
Q ss_pred --ceEEEecccCCCCHHHH
Q psy8274 188 --VKYLECSALTQKGLKTV 204 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~l 204 (228)
.+++++||++|.||.++
T Consensus 344 ~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 344 DNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp GGCEEEECCTTTCTTTSSC
T ss_pred cCccEEeeecccCCCcccc
Confidence 58999999999999976
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=140.65 Aligned_cols=153 Identities=18% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCC-------CCC-------CCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccc
Q psy8274 1 AVGKTCLLISYTTNA-------FPG-------EYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGL 65 (228)
Q Consensus 1 gvGKTsli~~~~~~~-------~~~-------~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 65 (228)
|+|||||+++|+... +.. ....+.+.+.. ..+.++.....+.+|||||++.|.......+..+
T Consensus 306 DvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~A-- 383 (1289)
T 3avx_A 306 DHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQM-- 383 (1289)
T ss_dssp TSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCC--
T ss_pred CCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhC--
Confidence 689999999998641 110 00111222211 2234455557889999999998765554455555
Q ss_pred hhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC
Q psy8274 66 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP 145 (228)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p 145 (228)
|++|+|+|++++...+.. .++..+... ++|
T Consensus 384 ----------------------------------------------D~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP 413 (1289)
T 3avx_A 384 ----------------------------------------------DGAILVVAATDGPMPQTR--EHILLGRQV--GVP 413 (1289)
T ss_dssp ----------------------------------------------SEEEEEEETTTCSCTTHH--HHHHHHHHH--TCS
T ss_pred ----------------------------------------------CEEEEEEcCCccCcHHHH--HHHHHHHHc--CCC
Confidence 999999999986543332 344444444 678
Q ss_pred -EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----ceEEEecccCC--------CCHHHHHHHHHHHh
Q psy8274 146 -IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA----VKYLECSALTQ--------KGLKTVFDEAIRAV 212 (228)
Q Consensus 146 -iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~evSa~~~--------~~v~~lf~~l~~~i 212 (228)
++||+||+|+.+..+..+ ...+++..+++.+++ .+++++||++| .|+.++|+.+...+
T Consensus 414 ~IIVVINKiDLv~d~e~le---------~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 414 YIIVFLNKCDMVDDEELLE---------LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CEEEEEECCTTCCCHHHHH---------HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEEeecccccchhhHH---------HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 789999999986322111 123456677777763 58999999999 46899999988866
Q ss_pred cC
Q psy8274 213 LC 214 (228)
Q Consensus 213 ~~ 214 (228)
..
T Consensus 485 p~ 486 (1289)
T 3avx_A 485 PE 486 (1289)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-15 Score=128.53 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=49.7
Q ss_pred hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHH
Q psy8274 125 SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTV 204 (228)
Q Consensus 125 s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~l 204 (228)
+|+.+.. ..+.......|+++|+||.|+....+ .....+++..+++.++ ++++++||+++ |++++
T Consensus 140 ~Ld~~~~---~~l~~l~~~~~iilV~~K~Dl~~~~e----------~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 140 GLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKE----------RERLKKRILDEIEEHN-IKIYHLPDAES-DEDED 204 (301)
T ss_dssp SCCHHHH---HHHHHHTTTSCEEEEECCGGGSCHHH----------HHHHHHHHHHHHHHTT-CCCCCCC----------
T ss_pred CCCHHHH---HHHHHHHhcCCEEEEEEeCCCCCHHH----------HHHHHHHHHHHHHHcC-CeEEecCCccc-cccHH
Confidence 4665531 33444445689999999999986532 1234567888899999 59999999999 99999
Q ss_pred HHHHHHHhcCCCC
Q psy8274 205 FDEAIRAVLCPVP 217 (228)
Q Consensus 205 f~~l~~~i~~~~~ 217 (228)
|.++.+.+....|
T Consensus 205 f~~l~~~i~~~~p 217 (301)
T 2qnr_A 205 FKEQTRLLKASIP 217 (301)
T ss_dssp CHHHHHHHHTTCS
T ss_pred HHHHHHHhhcCCC
Confidence 9999999876554
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-16 Score=130.98 Aligned_cols=85 Identities=18% Similarity=0.019 Sum_probs=54.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHH--HHHhCCce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM--AKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~ 189 (228)
+++++|+|+++..+..... .|+..+.. .+.|+++|+||+|+..... ...+..... ....+..+
T Consensus 164 ~~il~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~i~V~NK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 164 CLILAVSPANSDLANSDAL-KIAKEVDP--QGQRTIGVITKLDLMDEGT------------DARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp EEEEEEEESSSCGGGCHHH-HHHHHHCT--TCSSEEEEEECGGGSCTTC------------CCHHHHTTCSSCCTTCEEE
T ss_pred eEEEEEecCCcchhhhHHH-HHHHHhCC--CCCeEEEEEEccccCCCCc------------hHHHHHhCCcCcCCCCcEE
Confidence 3445799998765554433 34444443 3689999999999986422 111111100 00113347
Q ss_pred EEEecccCCCCHHHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~ 211 (228)
++++||++|.|++++|+++...
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHH
Confidence 8899999999999999998763
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-15 Score=132.40 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=73.5
Q ss_pred EcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCce
Q psy8274 34 VDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDV 113 (228)
Q Consensus 34 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (228)
++.....+.+|||||++.|.......+..+ |+
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~a------------------------------------------------D~ 111 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQA------------------------------------------------DC 111 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCC------------------------------------------------SE
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhC------------------------------------------------CE
Confidence 344456899999999998776555555555 99
Q ss_pred EEEEEecCChh---hHH---HHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc-hHHHHHHhhccCccccHHHHHHHHHHh
Q psy8274 114 FQICFSLVNPA---SFE---NVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD-KETIEKLKEKKLAPITYPQGLSMAKEI 185 (228)
Q Consensus 114 vi~v~Dvt~~~---s~~---~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 185 (228)
+|+|+|+++.. +|+ ... .++..+.. .++| ++||+||+|+... ....+ ...++...+++.+
T Consensus 112 ~ilVvda~~g~~~~sf~~~~qt~-~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~~~---------~i~~~~~~~l~~~ 179 (458)
T 1f60_A 112 AILIIAGGVGEFEAGISKDGQTR-EHALLAFT--LGVRQLIVAVNKMDSVKWDESRFQ---------EIVKETSNFIKKV 179 (458)
T ss_dssp EEEEEECSHHHHHHHTCTTSHHH-HHHHHHHH--TTCCEEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHHHH
T ss_pred EEEEEeCCcCccccccCcchhHH-HHHHHHHH--cCCCeEEEEEEccccccCCHHHHH---------HHHHHHHHHHHHc
Confidence 99999999763 331 112 22222222 2565 8999999999841 11111 1234566777777
Q ss_pred CC----ceEEEecccCCCCHHHH
Q psy8274 186 GA----VKYLECSALTQKGLKTV 204 (228)
Q Consensus 186 ~~----~~~~evSa~~~~~v~~l 204 (228)
++ .+++++||++|.|+.++
T Consensus 180 g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 180 GYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCCccCceEEEeecccCcCcccc
Confidence 74 58999999999999743
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=129.60 Aligned_cols=104 Identities=17% Similarity=0.059 Sum_probs=67.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCcee----------------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTV----------------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~----------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++|+..........++ +..+ .....+....+.+.+|||+|+.++.......++.+
T Consensus 19 gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~a 98 (665)
T 2dy1_A 19 GSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAA 98 (665)
T ss_dssp TSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhc
Confidence 799999999999544321111111 1111 12233333457889999999988765444444444
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
|++++|+|+++....... .++..+... +
T Consensus 99 ------------------------------------------------d~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ 126 (665)
T 2dy1_A 99 ------------------------------------------------DAALVAVSAEAGVQVGTE--RAWTVAERL--G 126 (665)
T ss_dssp ------------------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHHHT--T
T ss_pred ------------------------------------------------CcEEEEEcCCcccchhHH--HHHHHHHHc--c
Confidence 999999999876554433 444455443 6
Q ss_pred CCEEEEEeCCCCC
Q psy8274 144 TPIILVGTKLDLR 156 (228)
Q Consensus 144 ~piilv~nK~Dl~ 156 (228)
+|+++|+||+|+.
T Consensus 127 ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 127 LPRMVVVTKLDKG 139 (665)
T ss_dssp CCEEEEEECGGGC
T ss_pred CCEEEEecCCchh
Confidence 9999999999987
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=132.55 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEE
Q psy8274 38 PINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQIC 117 (228)
Q Consensus 38 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v 117 (228)
...+.||||||++.|.......+..+ |++|+|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~a------------------------------------------------D~alLV 285 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSA------------------------------------------------DFAVLV 285 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------------------------------------------------------CCSE
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhC------------------------------------------------CEEEEE
Confidence 36789999999999887766666666 999999
Q ss_pred EecCCh----------hhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCc-hHHHHHHhhccCccccHHHHHHHH-HH
Q psy8274 118 FSLVNP----------ASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDD-KETIEKLKEKKLAPITYPQGLSMA-KE 184 (228)
Q Consensus 118 ~Dvt~~----------~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~ 184 (228)
+|++++ .+...+ ..+... ++| +|||+||+|+... ....+ ....+...+. +.
T Consensus 286 VDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl~~~~~~~~~---------~i~~el~~~l~~~ 349 (592)
T 3mca_A 286 VDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDLMSWSEDRFQ---------EIKNIVSDFLIKM 349 (592)
T ss_dssp EEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGGGTTCHHHHH---------HHHHHHHHHHTTT
T ss_pred EECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEeccccccccHHHHH---------HHHHHHHHHHHHh
Confidence 999864 333322 122222 455 9999999999752 11111 1123344444 44
Q ss_pred hCC----ceEEEecccCCCCHH
Q psy8274 185 IGA----VKYLECSALTQKGLK 202 (228)
Q Consensus 185 ~~~----~~~~evSa~~~~~v~ 202 (228)
+|+ .+++++||++|.||.
T Consensus 350 ~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 350 VGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCGGGEEEEEECSSSCSSSC
T ss_pred hCCCccceEEEEEecccCcccc
Confidence 554 379999999999998
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=113.99 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++..+ ...+.++........+..++ ..+.+|||||+..+......+++.
T Consensus 46 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~---------------- 107 (262)
T 3def_A 46 GVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALEL---------------- 107 (262)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHH----------------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHH----------------
Confidence 7999999999998874 34444444444444455565 478999999998876443322211
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl 155 (228)
....+. ...+|++++|+|++... +......|+..+..... ..|+++|+||+|+
T Consensus 108 ----------------i~~~l~-------~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 108 ----------------IKGFLV-------NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp ----------------HHHHTT-------TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred ----------------HHHHHh-------cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 011110 01229999999997655 54443367777776543 2499999999999
Q ss_pred CC
Q psy8274 156 RD 157 (228)
Q Consensus 156 ~~ 157 (228)
..
T Consensus 164 ~~ 165 (262)
T 3def_A 164 SP 165 (262)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=118.43 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=68.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCC---CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
+.+++++|++ ...+..+. .|...+..+.. ..|.+||+||+|+... . ...+.....+..+ .
T Consensus 237 ~~lL~vvDls-~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-------------~~~~l~~~l~~~g-~ 299 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-------------AVKALADALAREG-L 299 (416)
T ss_dssp SEEEEEEETT-SCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-------------HHHHHHHHHHTTT-S
T ss_pred HhhhEEeCCc-cCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-------------HHHHHHHHHHhcC-C
Confidence 9999999998 66777776 77777666542 5899999999999864 1 1223444455556 4
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+++++||+++.|++++++++.+.+.....
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 89999999999999999999998876543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=121.78 Aligned_cols=174 Identities=14% Similarity=0.112 Sum_probs=76.1
Q ss_pred CCChhhhHHhhhhCCCCCCC--------Cceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY--------IPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEI 71 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~--------~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 71 (228)
|+|||||++.|++..+.... .+|+.. .....+..++....+.+||++|....... ...+. .+.+
T Consensus 41 GaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~----~i~~-- 113 (418)
T 2qag_C 41 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQ----PVID-- 113 (418)
T ss_dssp TSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------CH----HHHH--
T ss_pred CCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhhHH----HHHH--
Confidence 89999999999987763111 122221 11222233455568999999998654210 00000 0100
Q ss_pred cchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCCh-hhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 72 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNP-ASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 72 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~-~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
++ ++.+......-+..+. .-...+++.+++|+.+.. .+++.+...|+..+. .++|+|+|+
T Consensus 114 ----~i----------~~~~~~~l~qr~~IaR--al~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVi 174 (418)
T 2qag_C 114 ----YI----------DSKFEDYLNAESRVNR--RQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLI 174 (418)
T ss_dssp ----HH----------HHHHHHHTTTSCC-CC--CCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEE
T ss_pred ----HH----------HHHHHHHHHHHHHHHH--HhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEE
Confidence 00 0001000000000000 112233555666666553 466665435666664 369999999
Q ss_pred eCCCCCCchHHHHHHhhccCccccH--HHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 151 TKLDLRDDKETIEKLKEKKLAPITY--PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 151 nK~Dl~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
||+|+....+ +.. .++..++..++ ++++++|++++.+++++|..+...+.
T Consensus 175 nK~Dll~~~e------------v~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 175 AKADTLTPEE------------CQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ESTTSSCHHH------------HHHHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred EcccCccHHH------------HHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 9999987533 222 56777788888 58999999999999999988887654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-14 Score=115.48 Aligned_cols=59 Identities=24% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..|.++|+||+|+... +....+++..+++.++ ..+++++||++|.|++++|+++.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADA------------VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHH------------HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCch------------hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4788999999998753 2245566777777653 258999999999999999999988764
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=117.82 Aligned_cols=106 Identities=17% Similarity=0.092 Sum_probs=65.1
Q ss_pred CCChhhhHHhhhhCC--CCC--------CCCcee----------eecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCc
Q psy8274 1 AVGKTCLLISYTTNA--FPG--------EYIPTV----------FDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59 (228)
Q Consensus 1 gvGKTsli~~~~~~~--~~~--------~~~~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 59 (228)
|+|||||+++|+... +.. .+..+. +.+. .....++...+.+.+|||||+.+|......+
T Consensus 23 ~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~ 102 (529)
T 2h5e_A 23 DAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT 102 (529)
T ss_dssp TSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHG
T ss_pred CChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHH
Confidence 799999999999632 100 000111 1111 1122333334788999999998877555555
Q ss_pred cccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh
Q psy8274 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH 139 (228)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~ 139 (228)
+..+ |++|+|+|+++...-... .++..+..
T Consensus 103 l~~a------------------------------------------------D~~IlVvDa~~g~~~~t~--~~~~~~~~ 132 (529)
T 2h5e_A 103 LTAV------------------------------------------------DCCLMVIDAAKGVEDRTR--KLMEVTRL 132 (529)
T ss_dssp GGGC------------------------------------------------SEEEEEEETTTCSCHHHH--HHHHHHTT
T ss_pred HHHC------------------------------------------------CEEEEEEeCCccchHHHH--HHHHHHHH
Confidence 5555 999999999986433221 33333333
Q ss_pred hCCCCCEEEEEeCCCCCCc
Q psy8274 140 HCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 140 ~~~~~piilv~nK~Dl~~~ 158 (228)
.++|+++|+||+|+...
T Consensus 133 --~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 133 --RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp --TTCCEEEEEECTTSCCS
T ss_pred --cCCCEEEEEcCcCCccc
Confidence 26899999999999754
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=109.72 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|+|||||+++|++..+. ..+.++..... ...++.....+.+|||||+..+..+...+.. .+
T Consensus 49 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~--------~i------- 111 (270)
T 1h65_A 49 GVGKSSTVNSIIGERVVSISPFQSEGPRPV--MVSRSRAGFTLNIIDTPGLIEGGYINDMALN--------II------- 111 (270)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--EEEEEETTEEEEEEECCCSEETTEECHHHHH--------HH-------
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeeE--EEEEeeCCeEEEEEECCCCCCCccchHHHHH--------HH-------
Confidence 79999999999988763 23333322222 2233333467999999999876433221110 00
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCC-C--CCEEEEEeCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCP-S--TPIILVGTKLDL 155 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~-~--~piilv~nK~Dl 155 (228)
...+ ....+|++++|||++.. ++......|+..+..... . .|+++|+||+|+
T Consensus 112 -----------------~~~~-------~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 112 -----------------KSFL-------LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp -----------------HHHT-------TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred -----------------HHHh-------hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 0000 00122999999999753 454443377777776543 2 699999999999
Q ss_pred CCc
Q psy8274 156 RDD 158 (228)
Q Consensus 156 ~~~ 158 (228)
..+
T Consensus 167 ~~~ 169 (270)
T 1h65_A 167 SPP 169 (270)
T ss_dssp CCG
T ss_pred CCc
Confidence 754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-13 Score=123.93 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCChhhhHHhhhhC--CCCC------------------CCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTTN--AFPG------------------EYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+.. .+.. .+..|+... ...+..+ .+.+.+|||||+.+|...+...+
T Consensus 22 ~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG~~df~~~~~~~l 98 (691)
T 1dar_A 22 DAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPGHVDFTIEVERSM 98 (691)
T ss_dssp TSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCSSTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcCccchHHHHHHHH
Confidence 79999999999842 2210 111222111 1122223 36889999999988765544444
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
..+ |++++|+|+++..++.... .|. .+...
T Consensus 99 ~~a------------------------------------------------D~~ilVvDa~~g~~~~t~~-~~~-~~~~~ 128 (691)
T 1dar_A 99 RVL------------------------------------------------DGAIVVFDSSQGVEPQSET-VWR-QAEKY 128 (691)
T ss_dssp HHC------------------------------------------------SEEEEEEETTTCSCHHHHH-HHH-HHHHT
T ss_pred HHC------------------------------------------------CEEEEEEECCCCcchhhHH-HHH-HHHHc
Confidence 444 9999999999988887664 444 34433
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
+.|+++|+||+|+...
T Consensus 129 --~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 129 --KVPRIAFANKMDKTGA 144 (691)
T ss_dssp --TCCEEEEEECTTSTTC
T ss_pred --CCCEEEEEECCCcccC
Confidence 7999999999999754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=105.55 Aligned_cols=85 Identities=18% Similarity=0.086 Sum_probs=58.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-CceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG-AVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 190 (228)
+.+++|+|+++.... .. .+.. .. ..|+++|+||+|+... +....++...+++.++ ..++
T Consensus 131 ~~~i~vvd~~~~~~~--~~-~~~~---~~--~~~~iiv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~i 190 (221)
T 2wsm_A 131 NYRVVMVSVTEGDDV--VE-KHPE---IF--RVADLIVINKVALAEA------------VGADVEKMKADAKLINPRAKI 190 (221)
T ss_dssp SEEEEEEEGGGCTTH--HH-HCHH---HH--HTCSEEEEECGGGHHH------------HTCCHHHHHHHHHHHCTTSEE
T ss_pred CcEEEEEeCCCcchh--hh-hhhh---hh--hcCCEEEEecccCCcc------------hhhHHHHHHHHHHHhCCCCeE
Confidence 789999999875431 11 2211 11 4789999999998653 1234555666666553 2589
Q ss_pred EEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 191 LECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+++||++|.|++++|+++.+.+....
T Consensus 191 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 191 IEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHC---
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=108.33 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=66.8
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCcccc-HHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT-YPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~ 189 (228)
|++++|||++++. ++..+. .|+..+... ++|++||+||+||.+... +. .++...+++.+|+ +
T Consensus 81 D~vliV~d~~~p~~s~~~l~-~~l~~~~~~--~~~~ilV~NK~DL~~~~~------------v~~~~~~~~~~~~~g~-~ 144 (302)
T 2yv5_A 81 DRVIIVETLKMPEFNNYLLD-NMLVVYEYF--KVEPVIVFNKIDLLNEEE------------KKELERWISIYRDAGY-D 144 (302)
T ss_dssp CEEEEEECSTTTTCCHHHHH-HHHHHHHHT--TCEEEEEECCGGGCCHHH------------HHHHHHHHHHHHHTTC-E
T ss_pred CEEEEEEECCCCCCCHHHHH-HHHHHHHhC--CCCEEEEEEcccCCCccc------------cHHHHHHHHHHHHCCC-e
Confidence 9999999999986 888776 888877663 799999999999986521 22 3455677777884 8
Q ss_pred EEEecccCCCCHHHHHHHHH
Q psy8274 190 YLECSALTQKGLKTVFDEAI 209 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~ 209 (228)
++++||++|.|++++|..+.
T Consensus 145 ~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 145 VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEECCTTTCTTHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHhhcc
Confidence 99999999999999998754
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=122.92 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=60.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH----HHHHHhhccCccccHHHHHHHHHHhC-
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE----TIEKLKEKKLAPITYPQGLSMAKEIG- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~- 186 (228)
|++++|+|++++.+..... .|...+... ..|+++|+||+|+..... ..+...... ..+.......+....+
T Consensus 202 D~vL~Vvda~~~~s~~e~~-~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~-~~i~~~~~~~l~~~~~~ 277 (695)
T 2j69_A 202 HAILFVMRASQPCTLGERR-YLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASE-NRLRQVFNANLAEYCTV 277 (695)
T ss_dssp SEEEEEEETTSTTCHHHHH-HHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHH-HHHHHHHHHHHGGGGBS
T ss_pred CEEEEEEeCCCccchhHHH-HHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHH-HHHHHHHHHHHHHhhcc
Confidence 9999999999988888775 555444433 678999999999975420 000000000 0000000001111111
Q ss_pred ------CceEEEeccc--------------CCCCHHHHHHHHHHHhcC
Q psy8274 187 ------AVKYLECSAL--------------TQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 187 ------~~~~~evSa~--------------~~~~v~~lf~~l~~~i~~ 214 (228)
..++++|||+ ++.|+++++..+...+..
T Consensus 278 ~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 278 EGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp SSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1368999999 999999999999886643
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=116.08 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=51.9
Q ss_pred CeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEE
Q psy8274 36 GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQ 115 (228)
Q Consensus 36 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi 115 (228)
+..+.+.+|||||+.+|...+...++.+ |++|
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~aI 110 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFTIEVERSMRVL------------------------------------------------DGAV 110 (704)
T ss_pred CCceeEEEEeCCCccchHHHHHHHHHHC------------------------------------------------CEEE
Confidence 3448899999999988765554444444 9999
Q ss_pred EEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 116 ICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 116 ~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+|+|+++..+..... .| ..+... ++|+++|+||+|+...
T Consensus 111 lVvDa~~gv~~qt~~-~~-~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 111 MVYCAVGGVQPQSET-VW-RQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEEeCCCCCcHHHHH-HH-HHHHHc--CCCEEEEEeCCCcccc
Confidence 999999876655443 33 333333 6899999999998754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-13 Score=116.70 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=52.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++|+|+|.++...... .|+..+.... .+.|+++|+||+|+.... ....+.+..+...++ .+|
T Consensus 174 d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~ 237 (360)
T 3t34_A 174 NCIILAISPANQDLATS---DAIKISREVDPSGDRTFGVLTKIDLMDKG------------TDAVEILEGRSFKLK-YPW 237 (360)
T ss_dssp SEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEEEEECGGGCCTT------------CCSHHHHTTSSSCCS-SCC
T ss_pred CeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEEEEeCCccCCCc------------ccHHHHHcCcccccc-CCe
Confidence 99999998865443321 3444444443 368999999999998652 233333333444456 579
Q ss_pred EEecccCCCCHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDE 207 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~ 207 (228)
+++|++++.++++.+..
T Consensus 238 ~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 238 VGVVNRSQADINKNVDM 254 (360)
T ss_dssp EEECCCCHHHHHTTCCH
T ss_pred EEEEECChHHhccCCCH
Confidence 99999998888776544
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-13 Score=112.00 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=49.2
Q ss_pred ceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|++++|+|.++.. +-.... .+...+.. .+.|+++|+||+|+..... ...+........++ ..|
T Consensus 169 d~iilvvd~~~~~~~~~~~~-~i~~~~~~--~~~~~i~v~NK~Dl~~~~~------------~~~~~~~~~~~~~~-~~~ 232 (315)
T 1jwy_B 169 NAIIVAVTPANTDLANSDAL-QLAKEVDP--EGKRTIGVITKLDLMDKGT------------DAMEVLTGRVIPLT-LGF 232 (315)
T ss_dssp TEEEEEEEESSSCSTTCSHH-HHHHHHCS--SCSSEEEEEECTTSSCSSC------------CCHHHHTTSSSCCT-TCE
T ss_pred CeEEEEEEecCcchhhhHHH-HHHHHhCC--CCCcEEEEEcCcccCCcch------------HHHHHHhCCCccCC-CCe
Confidence 9999999985432 111111 23333332 3689999999999986421 11111110000111 245
Q ss_pred EEecc---cC---CCCHHHHHHHHHHHhcC
Q psy8274 191 LECSA---LT---QKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 191 ~evSa---~~---~~~v~~lf~~l~~~i~~ 214 (228)
+++|+ .+ +.|+++++..+...+..
T Consensus 233 ~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 233 IGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp EECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 56554 45 78999999998877654
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.5e-12 Score=117.06 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCChhhhHHhhhh--CCCCC-----------CC-------CceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCcc
Q psy8274 1 AVGKTCLLISYTT--NAFPG-----------EY-------IPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60 (228)
Q Consensus 1 gvGKTsli~~~~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 60 (228)
|+|||||+++|+. +.+.. ++ ..|+.. ....+..++ +.+.+|||||+.++.......+
T Consensus 20 ~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~-~~~~~~~~~--~~i~liDTPG~~df~~~~~~~l 96 (693)
T 2xex_A 20 DAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITS-AATTAAWEG--HRVNIIDTPGHVDFTVEVERSL 96 (693)
T ss_dssp GGTHHHHHHHHHHHHSSCC-------------------------CC-SEEEEEETT--EEEEEECCCCCSSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEee-eeEEEEECC--eeEEEEECcCCcchHHHHHHHH
Confidence 6899999999995 33311 00 011111 011233333 6789999999987665444344
Q ss_pred ccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh
Q psy8274 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH 140 (228)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~ 140 (228)
+.+ |++++|+|+++..+..... .|. .+...
T Consensus 97 ~~a------------------------------------------------D~~llVvDa~~g~~~~~~~-~~~-~~~~~ 126 (693)
T 2xex_A 97 RVL------------------------------------------------DGAVTVLDAQSGVEPQTET-VWR-QATTY 126 (693)
T ss_dssp HHC------------------------------------------------SEEEEEEETTTBSCHHHHH-HHH-HHHHT
T ss_pred HHC------------------------------------------------CEEEEEECCCCCCcHHHHH-HHH-HHHHc
Confidence 444 9999999999988877664 443 44444
Q ss_pred CCCCCEEEEEeCCCCCCc
Q psy8274 141 CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 141 ~~~~piilv~nK~Dl~~~ 158 (228)
+.|+++|+||+|+...
T Consensus 127 --~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 127 --GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp --TCCEEEEEECTTSTTC
T ss_pred --CCCEEEEEECCCcccc
Confidence 6899999999999764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=112.01 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHH
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~ 206 (228)
.+|+++|+||+|+... . ............+ .+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~~-~-------------~l~~l~~~~~~~~-~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASD-E-------------QIKRLVREEEKRG-YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCH-H-------------HHHHHHHHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccch-H-------------HHHHHHHHHhhcC-CcEEEEeccchhhHHHHHh
Confidence 3899999999998732 1 0122222223335 4899999999988876544
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-13 Score=116.32 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=49.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+++++|.|.+...+-.... .++..+.. .+.|+++|+||+|+.+....... ..+...+...+|+.+++
T Consensus 169 ~iiL~v~~a~~~~~~~~~~-~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~----------~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 169 CLILAVSPANSDLANSDAL-KVAKEVDP--QGQRTIGVITKLDLMDEGTDARD----------VLENKLLPLRRGYIGVV 235 (353)
T ss_dssp EEEEEEEETTSCGGGCHHH-HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHH----------HHTTCSSCCTTCEEECC
T ss_pred eEEEEEecCCCccchhHHH-HHHHHhCc--CCCceEEEeccccccCcchhHHH----------HHhCCcccccCCceEEE
Confidence 6666676765432211111 23333332 36899999999999864220000 00000001113445678
Q ss_pred EecccCCCCHHHHHHHHHH
Q psy8274 192 ECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~ 210 (228)
++||+++.|++++++.+..
T Consensus 236 ~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHH
T ss_pred eCCcccccccccHHHHHHH
Confidence 8999999999999998876
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=99.43 Aligned_cols=111 Identities=9% Similarity=-0.021 Sum_probs=69.0
Q ss_pred eCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh
Q psy8274 45 DTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA 124 (228)
Q Consensus 45 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~ 124 (228)
|.+||..++++|..||.++ |++|+|.|.+|.+
T Consensus 108 ~~GGQ~klRplWr~Yy~~T------------------------------------------------dglIfVVDSsD~~ 139 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVV------------------------------------------------DGFIYVANAEAHK 139 (227)
T ss_dssp ---------CCHHHHHHHC------------------------------------------------SEEEEEEECBTTC
T ss_pred ccCcHHHHHHHHHHHhcCC------------------------------------------------CEEEEEeccccHh
Confidence 3458999999999999998 9999999999986
Q ss_pred hHHHHHHhh---HHHHhhhC--CCCCEEEEEeCC-CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCC
Q psy8274 125 SFENVRAKW---YPEVRHHC--PSTPIILVGTKL-DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQ 198 (228)
Q Consensus 125 s~~~~~~~~---~~~l~~~~--~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~ 198 (228)
.++ ..+++ ...+.+.. .+.|++|++||. |+....+..+..+...+.. + ... +.+..|||++|
T Consensus 140 R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~--------l--~R~-W~Iq~csA~TG 207 (227)
T 3l82_B 140 RHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL--------L--NHP-WLVQDTEAETL 207 (227)
T ss_dssp CCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG--------G--CSC-EEEEEEETTTC
T ss_pred HHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC--------C--CCC-EEEEEeECCCC
Confidence 654 33233 23333322 468999999995 7765433222211111110 0 122 56899999999
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy8274 199 KGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 199 ~~v~~lf~~l~~~i~~~ 215 (228)
+|+.+.++|+...+...
T Consensus 208 eGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 208 TGFLNGIEWILEEVESK 224 (227)
T ss_dssp TTHHHHHHHHTTTTTTC
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999877543
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=106.09 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=54.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH-------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE------- 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------- 184 (228)
|++++|+|.+..+.+..+. ..+ ...|+++|+||+|+....... ....+.......
T Consensus 194 D~vl~V~d~~~~~~~~~l~----~~~----~~~p~ivVlNK~Dl~~~~~~~----------~~~~~l~~~l~~~~~~~~~ 255 (355)
T 3p32_A 194 DTFVLLTLARTGDQLQGIK----KGV----LELADIVVVNKADGEHHKEAR----------LAARELSAAIRLIYPREAL 255 (355)
T ss_dssp SEEEEEEESSTTCTTTTCC----TTS----GGGCSEEEEECCCGGGHHHHH----------HHHHHHHHHHHHHSTTCCS
T ss_pred CEEEEEECCCCCccHHHHH----HhH----hhcCCEEEEECCCCcChhHHH----------HHHHHHHHHHhhccccccC
Confidence 9999999987665543221 111 135899999999997542210 011111122111
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++ .+++++||++|.|++++++++.+.+.
T Consensus 256 ~~-~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 256 WR-PPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CC-CCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CC-CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 23 58999999999999999999988764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-10 Score=98.15 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=29.7
Q ss_pred CCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC
Q psy8274 143 STPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT 197 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~ 197 (228)
..|+++++|+.|..-. .......+..++...+ .+++++||+.
T Consensus 199 ~KPvi~v~N~~e~~~~------------~n~~~~~v~~~~~~~~-~~~i~~sA~~ 240 (363)
T 1jal_A 199 LKPTMYIANVNEDGFE------------NNPYLDRVREIAAKEG-AVVVPVCAAI 240 (363)
T ss_dssp TSCEEEEEECCTTCSS------------SCHHHHHHHHHHHHTT-CEEEEECHHH
T ss_pred CCcEEEEEeccccccc------------ccHHHHHHHHHHHHcC-CCEEEechHH
Confidence 4899999999996521 1123455677777778 4899999764
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-11 Score=110.07 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=34.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|+|+++........ .|+..+... ..|+++|+||+|+....+
T Consensus 190 D~il~VvDa~~~~~~~~~~-~~l~~l~~~--~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 190 DLIILLFDAHKLEISDEFS-EAIGALRGH--EDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp SEEEEEEETTSCCCCHHHH-HHHHHTTTC--GGGEEEEEECGGGSCHHH
T ss_pred CEEEEEEeCCcCCCCHHHH-HHHHHHHhc--CCCEEEEEECCCccCHHH
Confidence 9999999998855444444 666666544 579999999999987543
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-11 Score=96.82 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=54.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHh-hhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHH-------------
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVR-HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQ------------- 177 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~------------- 177 (228)
++++++.|.....+.......+..... ....+.|+++|+||+|+....+..+. ... .+ ..+.
T Consensus 139 ~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~-~~~-l~--~~~~~~~~l~~~~~~~~ 214 (262)
T 1yrb_A 139 PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERH-RKY-FE--DIDYLTARLKLDPSMQG 214 (262)
T ss_dssp CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHH-HHH-HH--CHHHHHHHHHHCCSHHH
T ss_pred ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHH-HHH-Hh--ChHHHHHHHhccccccc
Confidence 677777776543333222211111111 11236899999999999865421111 000 00 0000
Q ss_pred -----HHHHHHHhCC-ceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 178 -----GLSMAKEIGA-VKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 178 -----~~~~~~~~~~-~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
...+++.++. .+++++||+++.|++++++++.+.+.
T Consensus 215 ~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 215 LMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1112345543 37999999999999999999987653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-11 Score=113.69 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=55.5
Q ss_pred cCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceE
Q psy8274 35 DGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVF 114 (228)
Q Consensus 35 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~v 114 (228)
++..+.+.+|||||+.+|...+..+++.+ |++
T Consensus 94 ~~~~~~i~liDTPG~~df~~~~~~~l~~a------------------------------------------------D~a 125 (842)
T 1n0u_A 94 DGNSFLINLIDSPGHVDFSSEVTAALRVT------------------------------------------------DGA 125 (842)
T ss_dssp CSSEEEEEEECCCCCCSSCHHHHHHHHTC------------------------------------------------SEE
T ss_pred cCCCceEEEEECcCchhhHHHHHHHHHhC------------------------------------------------CEE
Confidence 44578899999999998876665555555 999
Q ss_pred EEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 115 QICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 115 i~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
|+|+|++++.++.... .|.... . .+.|+++|+||+|+..
T Consensus 126 ilVvDa~~g~~~qt~~-~~~~~~-~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 126 LVVVDTIEGVCVQTET-VLRQAL-G--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEETTTBSCHHHHH-HHHHHH-H--TTCEEEEEEECHHHHH
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH-H--cCCCeEEEEECCCcch
Confidence 9999999998888764 554332 2 2689999999999873
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=96.09 Aligned_cols=110 Identities=9% Similarity=-0.036 Sum_probs=73.7
Q ss_pred CCCCcccccCCCCccccccchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh
Q psy8274 46 TAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS 125 (228)
Q Consensus 46 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s 125 (228)
.+||..++++|..||.++ |++|+|.|.+|++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~t------------------------------------------------dglIfVVDSsDreR 225 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVV------------------------------------------------DGFIYVANAEAHKR 225 (312)
T ss_dssp ---CCCCCHHHHHHHHHC------------------------------------------------SEEEECCBCBTTCC
T ss_pred CCCHHHHHHHHHHHhcCC------------------------------------------------CEEEEEecCCcHhH
Confidence 568899999999999998 99999999999886
Q ss_pred HHHHHHh---hHHHHhhh--CCCCCEEEEEeC-CCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC
Q psy8274 126 FENVRAK---WYPEVRHH--CPSTPIILVGTK-LDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK 199 (228)
Q Consensus 126 ~~~~~~~---~~~~l~~~--~~~~piilv~nK-~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~ 199 (228)
++ ..++ +...+.+. ..+.|++|.+|| .|+....+..+..+...... + ... ..+..|||.+|+
T Consensus 226 le-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~--------l--~r~-W~Iq~csA~tGe 293 (312)
T 3l2o_B 226 HE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL--------L--NHP-WLVQDTEAETLT 293 (312)
T ss_dssp CC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG--------G--CSC-EEEEEEETTTCT
T ss_pred HH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc--------C--CCc-EEEEecccCCCc
Confidence 54 2212 22333332 247999999996 68876533222211111110 0 122 568999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q psy8274 200 GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 200 ~v~~lf~~l~~~i~~~ 215 (228)
|+.+.++|+...+...
T Consensus 294 GL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 294 GFLNGIEWILEEVESK 309 (312)
T ss_dssp THHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988644
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-10 Score=100.71 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=47.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHH-------HHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSM-------AKE 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~ 184 (228)
|.+++|+|++++.....+. . .+ ...|.++|.||+|+........ ...+.... +..
T Consensus 189 d~vl~V~d~~~~~~~~~i~-~---~i----l~~~~ivVlNK~Dl~~~~~~~~----------~~~~l~~~l~~~~~~a~~ 250 (349)
T 2www_A 189 DMFVLLLPPAGGDELQGIK-R---GI----IEMADLVAVTKSDGDLIVPARR----------IQAEYVSALKLLRKRSQV 250 (349)
T ss_dssp SEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHHH----------HHHHHHHHHTTCC-----
T ss_pred CEEEEEEcCCcchhHHHhH-H---HH----HhcCCEEEEeeecCCCchhHHH----------HHHHHHHHHHhcCccccC
Confidence 9999999998764332221 1 11 1458899999999975321000 00001000 011
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++ .+++++||++|.|++++++++.+.+
T Consensus 251 ~~-~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 251 WK-PKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp CC-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CC-ceEEEEecCCCCCHHHHHHHHHHHH
Confidence 23 5789999999999999999998764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-10 Score=99.79 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=49.7
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC-----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG----- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----- 186 (228)
|++++|+|.++...+. .+.. .. .+.|.++|+||+|+........ ...+.......++
T Consensus 171 D~vl~Vvd~~~~~~~~-----~l~~-~~--~~~p~ivv~NK~Dl~~~~~~~~----------~~~~l~~~l~~~~~~~~~ 232 (341)
T 2p67_A 171 DCFISLQIAGGGDDLQ-----GIKK-GL--MEVADLIVINKDDGDNHTNVAI----------ARHMYESALHILRRKYDE 232 (341)
T ss_dssp SEEEEEECC------C-----CCCH-HH--HHHCSEEEECCCCTTCHHHHHH----------HHHHHHHHHHHSCCSBTT
T ss_pred CEEEEEEeCCccHHHH-----HHHH-hh--hcccCEEEEECCCCCChHHHHH----------HHHHHHHHHHhccccccC
Confidence 9999999997654321 1111 00 1468899999999986422110 0011122122222
Q ss_pred -CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 187 -AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 187 -~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
..+++++||++|.|++++++.+...+.
T Consensus 233 ~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 233 WQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp BCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 257899999999999999999988653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=93.39 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCEEEEEeCCCCC--CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHH
Q psy8274 144 TPIILVGTKLDLR--DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVF 205 (228)
Q Consensus 144 ~piilv~nK~Dl~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf 205 (228)
.|+++++||.|.. +.. +....+.+..+++..| .+++++||++..++.+++
T Consensus 202 KPvi~v~N~~e~d~~~~~-----------~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGR-----------GNPQVEAVRRKALEEG-AEVVVVSARLEAELAELS 253 (368)
T ss_dssp SCEEEEEECCGGGTTTCT-----------TCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTSC
T ss_pred CCeEEeccccHHhhcccc-----------hhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHhc
Confidence 7999999999843 210 1134456777888888 589999998854444433
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=95.78 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred CceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 187 AVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 187 ~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.|.+..||++|.||+.+++.++..+..+..
T Consensus 268 ~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~ 298 (548)
T 3vqt_A 268 LTPVFFGSAINNFGVREMLDMFVEFAPGPQP 298 (548)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCSCC
T ss_pred cceeeecccccCcCHHHHHHHHHHhCCCCCC
Confidence 4678899999999999999999999877654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-09 Score=90.99 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=63.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
+++++|+|++|+. . .|...+.+...+.|+++|+||+||.... ...++. ..+++..|.
T Consensus 71 ~~il~VvD~~d~~-----~-~~~~~l~~~~~~~p~ilV~NK~DL~~~~-------------~~~~~~~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 71 ALVVKIVDIFDFN-----G-SWLPGLHRFVGNNKVLLVGNKADLIPKS-------------VKHDKVKHWMRYSAKQLGL 131 (368)
T ss_dssp CEEEEEEETTSHH-----H-HCCTTHHHHSSSSCEEEEEECGGGSCTT-------------SCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEECCCCc-----c-cHHHHHHHHhCCCcEEEEEEChhcCCcc-------------cCHHHHHHHHHHHHHHcCC
Confidence 7999999999853 2 7888888877789999999999997532 222233 333566674
Q ss_pred --ceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 188 --VKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..++++||++|.|++++++.+....
T Consensus 132 ~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 2789999999999999999987654
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-09 Score=101.30 Aligned_cols=83 Identities=19% Similarity=0.087 Sum_probs=54.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHH---HHHHhCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS---MAKEIGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~ 188 (228)
|++++|.|++++.+-.+.. .++..+... +.|+++|.||+|+..... .. .+... +...+++.
T Consensus 189 DlIL~VVDAs~~~~~~d~l-~ll~~L~~~--g~pvIlVlNKiDlv~~~~------------~~-~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 189 CLILAVSPANSDLANSDAL-KIAKEVDPQ--GQRTIGVITKLDLMDEGT------------DA-RDVLENKLLPLRRGYI 252 (772)
T ss_dssp EEEEEEEETTSCSSSCHHH-HHHHHHCTT--CSSEEEEEECTTSSCTTC------------CS-HHHHTTCSSCCSSCEE
T ss_pred cEEEEEEcCCCCcchhHHH-HHHHHHHhc--CCCEEEEEeCcccCCcch------------hh-HHHHHHHhhhhhccCC
Confidence 9999999998754433322 334444433 689999999999986432 11 11111 00012445
Q ss_pred eEEEecccCCCCHHHHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~ 210 (228)
+++.+||++|.|++++++.+..
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHH
Confidence 6788999999999999999886
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=5e-08 Score=85.07 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=70.8
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+|++++... ..+|..|+.+.....+.+++. .+++.||||-..- +
T Consensus 82 NvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~----------a---------------- 133 (376)
T 4a9a_A 82 SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDG----------A---------------- 133 (376)
T ss_dssp CHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC---------------------------
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCC----------c----------------
Confidence 7999999999997653 455666665555666777774 5678899995321 1
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLR 156 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~ 156 (228)
..+.+++..|...++.. |++++|.|++++..-.. .+..+|... ..+.|.+++.||.|..
T Consensus 134 --~~~~~~g~~~l~~i~~a-------------d~il~vvD~~~p~~~~~---~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 134 --KDGRGRGKQVIAVARTC-------------NLLFIILDVNKPLHHKQ---IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ------CHHHHHHHHHHHC-------------SEEEEEEETTSHHHHHH---HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred --hhhhHHHHHHHHHHHhc-------------CccccccccCccHHHHH---HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 23344444555555543 99999999998744322 223334433 2357888899999964
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.7e-09 Score=95.82 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=26.7
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...|.+..||++|.||+.+++.+...+..+..
T Consensus 211 ~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~ 242 (638)
T 3j25_A 211 SLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH 242 (638)
T ss_dssp SCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG
T ss_pred ccccccccccccCCCchhHhhhhhccccCccc
Confidence 34688899999999999999999987765543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-08 Score=86.79 Aligned_cols=82 Identities=26% Similarity=0.380 Sum_probs=62.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH----HHHHHHhCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG----LSMAKEIGA 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~ 187 (228)
+++++|+|++|+.+ .|...+.+...+.|+++|+||+|+.... ...+.. ..+++..|.
T Consensus 73 ~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-------------~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 73 ALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-------------VKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp CEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-------------CCHHHHHHHHHHHHHTTTC
T ss_pred cEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-------------cCHHHHHHHHHHHHHHcCC
Confidence 89999999999763 5666777776689999999999997642 222222 334556674
Q ss_pred --ceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 188 --VKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 188 --~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..++++||++|.|++++++.+....
T Consensus 134 ~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 134 CPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp CCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999987654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-08 Score=85.24 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=47.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh---C--
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI---G-- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~-- 186 (228)
|.+++|+|....+....+. ..+. ..|.+++.||+|+..... ......+.+.... .
T Consensus 170 d~vl~v~d~~~~~~~~~i~----~~i~----~~~~ivvlNK~Dl~~~~~------------~s~~~~~~l~~a~~l~~~~ 229 (337)
T 2qm8_A 170 DFFLVLMLPGAGDELQGIK----KGIF----ELADMIAVNKADDGDGER------------RASAAASEYRAALHILTPP 229 (337)
T ss_dssp SEEEEEECSCC------CC----TTHH----HHCSEEEEECCSTTCCHH------------HHHHHHHHHHHHHTTBCCS
T ss_pred CEEEEEEcCCCcccHHHHH----HHHh----ccccEEEEEchhccCchh------------HHHHHHHHHHHHHHhcccc
Confidence 9999999986543322111 1111 235677779999764321 1111122222211 1
Q ss_pred ----CceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 187 ----AVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 187 ----~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
..+++.+||+++.|++++++.+.+..
T Consensus 230 ~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 230 SATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp BTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 25789999999999999999988754
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=81.85 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
...|.+..||..+.|+..+++.++..+..+..
T Consensus 263 ~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~ 294 (709)
T 4fn5_A 263 EIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTE 294 (709)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHSCCTTS
T ss_pred eeeeeeeeecccCCchHHHHHHHHhhCCCCcc
Confidence 34678889999999999999999998876643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=73.20 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=58.7
Q ss_pred ceEEEEEecCChhhHHH--HHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPASFEN--VRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~--~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
|++++|+|+.++.+..+ +. +| ..+.|+++|.||+||.+... .+....+.+..| .+
T Consensus 25 DvVl~VvDAr~p~~~~~~~l~-~~-------l~~kp~ilVlNK~DL~~~~~--------------~~~~~~~~~~~g-~~ 81 (282)
T 1puj_A 25 DIVYELVDARIPMSSRNPMIE-DI-------LKNKPRIMLLNKADKADAAV--------------TQQWKEHFENQG-IR 81 (282)
T ss_dssp SEEEEEEETTSTTTTSCHHHH-HH-------CSSSCEEEEEECGGGSCHHH--------------HHHHHHHHHTTT-CC
T ss_pred CEEEEEEeCCCCCccCCHHHH-HH-------HCCCCEEEEEECcccCCHHH--------------HHHHHHHHHhcC-Cc
Confidence 99999999999888753 22 33 25799999999999987421 122234444557 48
Q ss_pred EEEecccCCCCHHHHHHHHHHHhc
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++++||+++.|+++++..+.+.+.
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHHH
Confidence 999999999999999988776553
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.8e-07 Score=80.75 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCc-eeeeccceeEEEcCe---------------EEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIP-TVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++++..+.....| +..+.....+.+++. ...+.+||++|.....
T Consensus 32 nvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 32 NVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 7999999999998765332222 222222333444332 2358999999987543
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=66.67 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=54.3
Q ss_pred CceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 111 ~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
+|++++|+|+.++.+..... +. + . ++|.++|.||+||.+... .+....+.+..|. ++
T Consensus 22 ~D~vl~VvDar~P~~~~~~~---l~-l---l-~k~~iivlNK~DL~~~~~--------------~~~~~~~~~~~g~-~v 78 (262)
T 3cnl_A 22 VNTVVEVRDARAPFATSAYG---VD-F---S-RKETIILLNKVDIADEKT--------------TKKWVEFFKKQGK-RV 78 (262)
T ss_dssp CSEEEEEEETTSTTTTSCTT---SC-C---T-TSEEEEEEECGGGSCHHH--------------HHHHHHHHHHTTC-CE
T ss_pred CCEEEEEeeCCCCCcCcChH---HH-h---c-CCCcEEEEECccCCCHHH--------------HHHHHHHHHHcCC-eE
Confidence 39999999999987765421 11 1 1 789999999999987421 1122344455674 67
Q ss_pred EEecccCCCCHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~ 210 (228)
.+||+++.|+++++..+..
T Consensus 79 -~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 79 -ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -EECCTTSCHHHHHHHHCCC
T ss_pred -EEECCCCcCHHHHHHHHHH
Confidence 9999999999998877644
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.5e-05 Score=67.49 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
.|+|.+++|+|+.+|..-....+.++...... ++|.+||.||+||.+..... ....+...+.+..| .
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~----------~~~~~~~~~y~~~g-~ 151 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTE----------DTIQAYAEDYRNIG-Y 151 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHH----------HHHHHHHHHHHHHT-C
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhH----------HHHHHHHHHHHhCC-C
Confidence 45599999999986655333433555444333 78889999999998752100 00123344455568 4
Q ss_pred eEEEecccCCCCHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDE 207 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~ 207 (228)
+.+.+||.++.|+++++..
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 8999999999998876643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.7e-05 Score=69.41 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=47.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCE-EEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPI-ILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|.+++|.|.+...... .....+... .|+ .+|.||+|...... .+.......+.
T Consensus 215 d~vllVvDa~~g~~~~----~~a~~~~~~---~~i~gvVlNK~D~~~~~g----------------~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 215 DNIVYVMDASIGQACE----AQAKAFKDK---VDVASVIVTKLDGHAKGG----------------GALSAVAATKSPII 271 (504)
T ss_dssp SEEEEEEETTCCTTHH----HHHHHHHHH---HCCCCEEEECTTSCCCCT----------------HHHHHHHHHCCCEE
T ss_pred ceEEEEEeccccccHH----HHHHHHHhh---cCceEEEEeCCccccchH----------------HHHHHHHHhCCCeE
Confidence 9999999998754321 222233332 675 78899999875321 01112222221
Q ss_pred --------------ceEEEecccCCCC-HHHHHHHHHHH
Q psy8274 188 --------------VKYLECSALTQKG-LKTVFDEAIRA 211 (228)
Q Consensus 188 --------------~~~~evSa~~~~~-v~~lf~~l~~~ 211 (228)
.+...+|+..|.| +.++++++.+.
T Consensus 272 fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 272 FIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1234579999999 99999998765
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=69.01 Aligned_cols=43 Identities=2% Similarity=-0.155 Sum_probs=26.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
++++++.|....-.+..+ ..+..+.. .+.|++++.||.|....
T Consensus 247 ~~~~~~l~~~~~~~~g~l--~~l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 247 HPRVYQLNEGQTLFFGGL--ARLDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp CCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred CceEEEEcCCceEEECCE--EEEEEccC--CCceEEEEecCCccccc
Confidence 888999887432111122 11222222 25799999999998764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0004 Score=59.98 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=53.9
Q ss_pred CCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCc
Q psy8274 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAV 188 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (228)
-|+|.+++|.... |..-....+.++-..... ++|++||.||+||.+.... + ..++.....+..| .
T Consensus 129 anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~-~----------~~~~~~~~y~~~G-~ 193 (358)
T 2rcn_A 129 ANIDQIVIVSAIL-PELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM-D----------FVNEQMDIYRNIG-Y 193 (358)
T ss_dssp ECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH-H----------HHHHHHHHHHTTT-C
T ss_pred hcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH-H----------HHHHHHHHHHhCC-C
Confidence 4569999887654 444333333555444444 6788999999999875210 0 0112233344567 4
Q ss_pred eEEEecccCCCCHHHHHHH
Q psy8274 189 KYLECSALTQKGLKTVFDE 207 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~ 207 (228)
+++.+||.++.|++++...
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp CEEECBTTTTBTHHHHHHH
T ss_pred cEEEEecCCCcCHHHHHHh
Confidence 7999999999999988764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00039 Score=61.39 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=26.3
Q ss_pred eEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 113 VFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 113 ~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
+++|+.|...+-+-.++ .++..+. .++|+|+|.||+|...+.+
T Consensus 151 ~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp EEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHHH
T ss_pred EEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchHH
Confidence 36667676544443333 3444443 4789999999999887543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00013 Score=63.78 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCChhhhHHhhhhCCC-CC-CCCceeeeccceeEEEcCeE---------------EeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAF-PG-EYIPTVFDNYSANVMVDGKP---------------INLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~ 51 (228)
|||||||+|.+++..+ .. .+..+..+.....+.+++.. ..+.+||++|...
T Consensus 30 naGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 30 NVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 7999999999998765 32 33333333334455555421 3578999999653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.36 E-value=1.6e-05 Score=68.94 Aligned_cols=43 Identities=5% Similarity=-0.107 Sum_probs=25.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+.++++.|....-.+..+ ..+..+.. .+.|++++.||.|....
T Consensus 246 ~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 246 KPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp CCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEE
T ss_pred CceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccc
Confidence 778888876322111121 11222222 25799999999998864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0022 Score=53.03 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 110 ~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
++++.+++.|.+. .++..+...++..+... .++++|.+|+|.....+
T Consensus 111 Ral~~lllldep~-~gL~~lD~~~l~~L~~~---~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 111 RVHCCLYFISPTG-HSLRPLDLEFMKHLSKV---VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp SCCEEEEEECCCS-SSCCHHHHHHHHHHHTT---SEEEEEETTGGGSCHHH
T ss_pred eeeeeeEEEecCC-CcCCHHHHHHHHHHHhc---CcEEEEEeccccCCHHH
Confidence 3477888888541 12222221444555443 89999999999887543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0038 Score=54.83 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHH----HHH----HHhC--CceEEEecc--cCCCCH
Q psy8274 134 YPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL----SMA----KEIG--AVKYLECSA--LTQKGL 201 (228)
Q Consensus 134 ~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~----~~~----~~~~--~~~~~evSa--~~~~~v 201 (228)
...+.+. +.|+++|.||.|+.--.+ -. .........+.. .+. .+.| ....+.+|+ ..+.|+
T Consensus 168 a~aL~~~--~~p~~lV~tkpdlllLDE---Pt--sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 168 AKAISMM--KKEFYFVRTKVDSDITNE---AD--GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp HHHHHHT--TCEEEEEECCHHHHHHHH---HT--TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred HHHHHhc--CCCeEEEEecCcccccCc---cc--ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 3344443 689999999999651100 00 000112222222 222 1222 235788999 677789
Q ss_pred HHHHHHHHHHhc
Q psy8274 202 KTVFDEAIRAVL 213 (228)
Q Consensus 202 ~~lf~~l~~~i~ 213 (228)
+++.+.+...+.
T Consensus 241 e~L~d~I~~~Lp 252 (413)
T 1tq4_A 241 PVLMDKLISDLP 252 (413)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCc
Confidence 999999987664
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0036 Score=55.44 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=39.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|.+++|.|.+....-... ...+... -.+..+|.||.|..... ..+..+....+ .|+.
T Consensus 214 d~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~g----------------G~~ls~~~~~g-~PI~ 270 (443)
T 3dm5_A 214 HEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAKG----------------GGALSAVAATG-APIK 270 (443)
T ss_dssp SEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSSH----------------HHHHHHHHTTC-CCEE
T ss_pred ceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCcccc----------------cHHHHHHHHHC-CCEE
Confidence 899999998865433222 2223322 23456888999987642 12344455567 4777
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.++. |+++++
T Consensus 271 fig~--Ge~vdd 280 (443)
T 3dm5_A 271 FIGT--GEKIDD 280 (443)
T ss_dssp EEEC--SSSTTC
T ss_pred EEEc--CCChHH
Confidence 6764 555543
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0012 Score=58.42 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=25.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCC-C-EEEEEeCCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPST-P-IILVGTKLDLRD 157 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~-p-iilv~nK~Dl~~ 157 (228)
|.+++|.|.+.... .. .. +...+... | ..+|.||+|...
T Consensus 212 d~vllVvda~~g~~---~~-~~---~~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 212 DEIILVIDGTIGQQ---AG-IQ---AKAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SEEEEEEEGGGGGG---HH-HH---HHHHHTTSCSCEEEEEECSSSCS
T ss_pred cceeEEeeccccHH---HH-HH---HHHHhhcccCCeEEEEeCCCCcc
Confidence 99999999876532 11 11 22222335 6 788999999865
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=53.98 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=26.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQED 51 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~ 51 (228)
|||||||+|++.+..... ..++.+.+.. ..+.++. .+.+|||||...
T Consensus 109 ~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 109 NTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp TSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred CCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 799999999999766531 2222232222 1223332 688999999754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0038 Score=51.98 Aligned_cols=46 Identities=24% Similarity=0.127 Sum_probs=25.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++++..... ..+..+.+. ...+.++. .+.+|||||..
T Consensus 130 nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 130 NVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp TSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 799999999999765321 111111111 11233333 57899999974
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=52.02 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=39.8
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
+.+++|.|.+.......+ ...+... -.+..+|.||.|..... ..+.......+ .|+.
T Consensus 213 d~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~~----------------G~als~~~~~g-~Pi~ 269 (433)
T 3kl4_A 213 DDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAKG----------------GGALSAVVATG-ATIK 269 (433)
T ss_dssp SEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSCH----------------HHHHHHHHHHT-CEEE
T ss_pred cceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccccc----------------hHHHHHHHHHC-CCEE
Confidence 899999999865332222 2233322 24567889999987531 23455555667 5777
Q ss_pred EecccCCCCH
Q psy8274 192 ECSALTQKGL 201 (228)
Q Consensus 192 evSa~~~~~v 201 (228)
.++. |+++
T Consensus 270 fig~--Ge~v 277 (433)
T 3kl4_A 270 FIGT--GEKI 277 (433)
T ss_dssp EEEC--CSSS
T ss_pred EEEC--CCCh
Confidence 7775 5554
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0017 Score=57.81 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=22.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVG 150 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~ 150 (228)
.+.++|+|.++. +..... .|...+... ..+++.+-
T Consensus 122 ~G~~vV~D~tn~-~~~~R~-~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 122 GGHVAVFDATNT-TRERRA-MIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp CCSEEEEESCCC-SHHHHH-HHHHHHHHH--TCEEEEEE
T ss_pred CCCEEEEeCCCC-CHHHHH-HHHHHHHhc--CCcEEEEE
Confidence 788999999987 555544 676666655 34444443
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=53.30 Aligned_cols=52 Identities=23% Similarity=0.079 Sum_probs=28.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEE----E-cCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM----V-DGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~i~D~~g~~~~ 52 (228)
|||||||+|++++....-...+|.......... + ......+.++||||-...
T Consensus 48 nvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 48 RTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp TSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 799999999999765311222222111111111 1 122246788999997654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.096 Score=44.42 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=39.5
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|-.+++.|.+...... .....+.+. ...-+++.||.|.... ...+.......+ .|+.
T Consensus 243 de~llvLDa~t~~~~~----~~~~~~~~~--~~it~iilTKlD~~a~----------------~G~~l~~~~~~~-~pi~ 299 (328)
T 3e70_C 243 NLVIFVGDALAGNAIV----EQARQFNEA--VKIDGIILTKLDADAR----------------GGAALSISYVID-APIL 299 (328)
T ss_dssp SEEEEEEEGGGTTHHH----HHHHHHHHH--SCCCEEEEECGGGCSC----------------CHHHHHHHHHHT-CCEE
T ss_pred CCCEEEEecHHHHHHH----HHHHHHHHh--cCCCEEEEeCcCCccc----------------hhHHHHHHHHHC-CCEE
Confidence 8889999987653222 222233322 1223667799996432 223556677778 5777
Q ss_pred EecccCCCCHHH
Q psy8274 192 ECSALTQKGLKT 203 (228)
Q Consensus 192 evSa~~~~~v~~ 203 (228)
.++ +|+++++
T Consensus 300 ~i~--~Ge~v~d 309 (328)
T 3e70_C 300 FVG--VGQGYDD 309 (328)
T ss_dssp EEE--CSSSTTC
T ss_pred EEe--CCCCccc
Confidence 776 6766654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=89.32 E-value=1.4 Score=40.34 Aligned_cols=16 Identities=38% Similarity=0.262 Sum_probs=13.7
Q ss_pred CCCEEEEEeCCCCCCc
Q psy8274 143 STPIILVGTKLDLRDD 158 (228)
Q Consensus 143 ~~piilv~nK~Dl~~~ 158 (228)
..+.|+|.||.|+.+.
T Consensus 214 g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 214 GDRTIGILTKPDLVDK 229 (608)
T ss_dssp CCSEEEEEECGGGSSS
T ss_pred CCceEEEecchhhcCc
Confidence 5789999999998864
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=88.90 E-value=0.3 Score=43.16 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
++|||+|+|++++.
T Consensus 77 ~~GKStLLN~llg~ 90 (447)
T 3q5d_A 77 RKGKSFLMDFMLRY 90 (447)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhh
Confidence 68999999999863
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=87.23 E-value=1 Score=37.45 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=39.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (228)
|.+++|.|.+..... . .....+.. ..| ..+|.||.|.... ...+..+....+ .|+
T Consensus 214 d~vllVvda~~g~~~---~-~~~~~~~~---~~~i~gvVlnk~D~~~~----------------~g~~~~~~~~~~-~pi 269 (297)
T 1j8m_F 214 DEVTLVIDASIGQKA---Y-DLASKFNQ---ASKIGTIIITKMDGTAK----------------GGGALSAVAATG-ATI 269 (297)
T ss_dssp SEEEEEEEGGGGGGH---H-HHHHHHHH---TCTTEEEEEECGGGCTT----------------HHHHHHHHHTTT-CCE
T ss_pred CEEEEEeeCCchHHH---H-HHHHHHHh---hCCCCEEEEeCCCCCcc----------------hHHHHHHHHHHC-cCE
Confidence 999999998743221 1 11222222 356 6688899997643 123455666777 477
Q ss_pred EEecccCCCCHHH
Q psy8274 191 LECSALTQKGLKT 203 (228)
Q Consensus 191 ~evSa~~~~~v~~ 203 (228)
..++ +|+++++
T Consensus 270 ~~i~--~Ge~v~d 280 (297)
T 1j8m_F 270 KFIG--TGEKIDE 280 (297)
T ss_dssp EEEE--CSSSTTC
T ss_pred EEEe--CCCChhh
Confidence 7775 5666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 228 | ||||
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 2e-36 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 1e-35 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 1e-33 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 3e-31 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 2e-30 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 9e-29 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-26 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 9e-26 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 7e-24 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-24 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-22 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-22 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 2e-21 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 3e-21 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 4e-21 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 4e-21 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 7e-21 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-20 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 1e-20 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-20 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 1e-18 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 1e-18 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-17 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 1e-16 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-16 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-16 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 2e-16 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 2e-14 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 4e-14 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 4e-14 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 2e-13 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 7e-12 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 3e-11 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-10 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 2e-10 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 3e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 5e-09 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 8e-09 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-08 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 7e-08 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 1e-07 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 1e-07 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 2e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 5e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 3e-04 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 4e-04 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 7e-07 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 7e-07 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 1e-06 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 8e-06 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 8e-06 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 2e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 3e-05 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 4e-05 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-04 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 2e-04 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 0.003 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (312), Expect = 2e-36
Identities = 121/228 (53%), Positives = 143/228 (62%), Gaps = 49/228 (21%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTN FP EY+PTVFDNY+ VM+ G+P LGL+DTAGQEDYDRLRPLSY
Sbjct: 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSY 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DVF +CFS+
Sbjct: 73 ------------------------------------------------PQTDVFLVCFSV 84
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+P+SFENV+ KW PE+ HHCP TP +LVGT++DLRDD TIEKL + K PIT
Sbjct: 85 VSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK 144
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228
+A+++ AVKY+ECSALTQKGLK VFDEAI A L P P K +RCVLL
Sbjct: 145 LARDLKAVKYVECSALTQKGLKNVFDEAILAALEP-PEPKKSRRCVLL 191
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (306), Expect = 1e-35
Identities = 156/217 (71%), Positives = 163/217 (75%), Gaps = 48/217 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP+NLGLWDTAGQEDYDRLRPLSY
Sbjct: 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 74
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ DV ICFSL
Sbjct: 75 ------------------------------------------------PQTDVSLICFSL 86
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
V+PASFENVRAKWYPEVRHHCP+TPIILVGTKLDLRDDK+TIEKLKEKKL PITYPQGL+
Sbjct: 87 VSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217
MAKEIGAVKYLECSALTQ+GLKTVFDEAIRAVLCP P
Sbjct: 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 1e-33
Identities = 107/215 (49%), Positives = 133/215 (61%), Gaps = 48/215 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
AVGKTCLL+SY +AFP EY+PTVFD+Y+ +V V GK LGL+DTAGQEDYDRLRPLSY
Sbjct: 19 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 78
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
DVF ICFS+
Sbjct: 79 ------------------------------------------------PMTDVFLICFSV 90
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VNPASF+NV+ +W PE++ + P+ P +L+GT++DLRDD +T+ +L + K PI QG
Sbjct: 91 VNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 150
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215
+AKEIGA Y+ECSALTQKGLKTVFDEAI A+L P
Sbjct: 151 LAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (276), Expect = 3e-31
Identities = 91/213 (42%), Positives = 115/213 (53%), Gaps = 48/213 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKTCLLI + + FP Y+PTVF+NY A++ VDGK + L LWDTAG EDYDRLRPLSY
Sbjct: 12 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSY 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
DV +CFS+
Sbjct: 72 ------------------------------------------------PDTDVILMCFSI 83
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P S EN+ KW PEV+H CP+ PIILVG K DLR+D+ T +L + K P+ +G
Sbjct: 84 DSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRD 143
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
MA IGA Y+ECSA T+ G++ VF+ A RA L
Sbjct: 144 MANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (271), Expect = 2e-30
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 49/214 (22%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + + FP Y+PTVF+NY+A+ +D + I L LWDT+G YD +RP
Sbjct: 12 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP--- 68
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D ICF +
Sbjct: 69 ---------------------------------------------LSYPDSDAVLICFDI 83
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
P + ++V KW E++ CP+T ++LVG K DLR D T+ +L + P++Y QG +
Sbjct: 84 SRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 143
Query: 181 MAKEIGAVKYLECSALT-QKGLKTVFDEAIRAVL 213
MAK+IGA Y+ECSAL + ++ +F A A +
Sbjct: 144 MAKQIGAATYIECSALQSENSVRDIFHVATLACV 177
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (259), Expect = 9e-29
Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ + + F +I T+ ++ V ++GK + L +WDTAGQE + +
Sbjct: 12 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 71
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 72 YRGA------------------------------------------------MGIILVYD 83
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + +F N++ + H ++LVG K D+ T + QG
Sbjct: 84 ITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-------------QGE 130
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++AKE+G + ++E SA + +F + +
Sbjct: 131 ALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQ 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 98.3 bits (244), Expect = 2e-26
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTC+L ++ +AF +I T+ ++ + +DGK I L +WDTAGQE + +
Sbjct: 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 76 YRGA------------------------------------------------MGIMLVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ N SF+N+R H +++G K D+ D ++ ++ +G
Sbjct: 88 ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE------------RGE 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A + G +K++E SA ++ F R +
Sbjct: 136 KLALDYG-IKFMETSAKANINVENAFFTLARDIK 168
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.8 bits (240), Expect = 9e-26
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTCL+ +T FP T+ D V ++G+ + L +WDTAGQE + +
Sbjct: 15 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 75 YRSA------------------------------------------------NALILTYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SF + ++ +LVG K+DL + + ++ +
Sbjct: 87 ITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR------------EVSQQRAE 134
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ + YLE SA ++ +F + ++
Sbjct: 135 EFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI 167
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.2 bits (228), Expect = 7e-24
Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ ++ + + +YI T+ ++ V +DGK + L +WDTAGQE + +
Sbjct: 16 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + I +
Sbjct: 76 YRGS------------------------------------------------HGIIIVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + SF V+ R+ + +LVG K DL+D + + +
Sbjct: 88 VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAK------------ 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + +LE SAL ++ F R +
Sbjct: 136 -EFADANKMPFLETSALDSTNVEDAFLTMARQIK 168
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.5 bits (226), Expect = 7e-24
Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 62/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL +T F + T+ + + V G+ I L +WDTAGQE + +
Sbjct: 14 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 73
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 74 YRGA------------------------------------------------AGALMVYD 85
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ +++ ++ + P+T IIL+G K DL ++ + +
Sbjct: 86 ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYE------------EAK 133
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A+E G +LE SA T + ++ F EA + +
Sbjct: 134 QFAEENGL-LFLEASAKTGENVEDAFLEAAKKI 165
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 88.0 bits (217), Expect = 2e-22
Identities = 40/214 (18%), Positives = 73/214 (34%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L Y ++F ++ TV ++ + + K I L +WDTAGQE Y +
Sbjct: 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y F + +
Sbjct: 75 YRGA------------------------------------------------MGFILMYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ N SF V+ + + ++LVG K D+ D++ ++ +G
Sbjct: 87 ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER------------VVSSERGR 134
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A +G ++ E SA +K F+ + +
Sbjct: 135 QLADHLGF-EFFEASAKDNINVKQTFERLVDVIC 167
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.7 bits (216), Expect = 3e-22
Identities = 40/214 (18%), Positives = 71/214 (33%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GK+CLL + F + T+ + S + V GK + L +WDTAGQE + +
Sbjct: 15 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 74
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 75 Y------------------------------------------------RGAAGALLVYD 86
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + ++ + + IIL G K DL D+ +T+ +
Sbjct: 87 ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR------------EVTFLEAS 134
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A+E + +LE SALT + ++ F + R +L
Sbjct: 135 RFAQENE-LMFLETSALTGENVEEAFVQCARKIL 167
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (210), Expect = 2e-21
Identities = 43/214 (20%), Positives = 67/214 (31%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL +T N F E T+ + ++ VDGK I +WDTAGQE Y R+
Sbjct: 14 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 73
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 74 Y------------------------------------------------RGAVGALLVYD 85
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ ++ENV H + I+LVG K DLR +
Sbjct: 86 IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF---------- 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
E + ++E SAL ++ F + +
Sbjct: 136 ---AEKNNLSFIETSALDSTNVEEAFKNILTEIY 166
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.6 bits (208), Expect = 3e-21
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + T F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +SL
Sbjct: 73 ------------------------------------------------KNGQGFILVYSL 84
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
VN SF++++ +R P+ILVG K+DL ++E +G
Sbjct: 85 VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS------------EGR 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++A+E G ++E SA ++ + +F E +R +
Sbjct: 133 ALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 4e-21
Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKTCLL+ + AF G +I TV ++ + + VDG + L +WDTAGQE + +
Sbjct: 16 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 75
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y + +
Sbjct: 76 YYRDA------------------------------------------------HALLLLY 87
Query: 119 SLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ N ASF+N++A + ++L+G K+D ++ + G
Sbjct: 88 DVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHER------------VVKREDG 135
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+AKE G + ++E SA T + F + +
Sbjct: 136 EKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.5 bits (208), Expect = 4e-21
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+CLL+ +T F + T+ + A ++ +DGK I L +WDTAGQE + +
Sbjct: 13 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 73 YRGA------------------------------------------------AGALLVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ +F ++ + +H + I+L+G K DL ++ + +G
Sbjct: 85 ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKRE------------EGE 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A+E G ++E SA T ++ F + +
Sbjct: 133 AFAREHGL-IFMETSAKTACNVEEAFINTAKEIY 165
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (206), Expect = 7e-21
Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 68/219 (31%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ L+ Y TN F + T+ + + VDG + + +WDTAGQE + LR
Sbjct: 16 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y D + FS
Sbjct: 76 YRG------------------------------------------------SDCCLLTFS 87
Query: 120 LVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ + SF+N+ W E ++ S P +++G K+D+ + + + E
Sbjct: 88 VDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTE----------- 135
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + ++ G Y E SA + F+EA+R VL
Sbjct: 136 --EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.8 bits (206), Expect = 1e-20
Identities = 51/238 (21%), Positives = 80/238 (33%), Gaps = 79/238 (33%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-----------DGKPINLGLWDTAGQ 49
VGKT L YT N F ++I TV ++ +V ++L LWDTAGQ
Sbjct: 15 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 74
Query: 50 EDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKK 109
E + L +
Sbjct: 75 ERFRSLTTAFFRDA---------------------------------------------- 88
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEK 168
F + F L + SF NVR + C + I+L+G K DL D +E E
Sbjct: 89 --MGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE----- 141
Query: 169 KLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCV 226
Q +A + G + Y E SA T + ++ + + ++ + ++CV
Sbjct: 142 -------RQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIM------KRMEQCV 185
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.1 bits (204), Expect = 1e-20
Identities = 43/213 (20%), Positives = 69/213 (32%), Gaps = 62/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
+VGKT L+ + ++F Y T+ D S + ++ + I L LWDTAGQE + L P
Sbjct: 10 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSY 69
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
+ +
Sbjct: 70 IRD------------------------------------------------SAAAVVVYD 81
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ N SF+ I+LVG K DL D ++ + E+
Sbjct: 82 ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGER----------- 130
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
AKE+ ++E SA +K +F A+
Sbjct: 131 -KAKELNV-MFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.4 bits (200), Expect = 6e-20
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGK+ LL+ +T + F E T+ D + VDG L +WDTAGQE + L P
Sbjct: 17 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 76
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 77 Y------------------------------------------------RGAQGVILVYD 88
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ +F + + + + ++ ++++E + +GL
Sbjct: 89 VTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE------------VDRNEGL 136
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A++ + ++E SA T G++ F+E + ++
Sbjct: 137 KFARKHS-MLFIEASAKTCDGVQCAFEELVEKII 169
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.7 bits (190), Expect = 1e-18
Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT L++ Y N F ++I T+ ++ + + GK +NL +WDTAGQE + L P+
Sbjct: 13 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + +
Sbjct: 73 YRD------------------------------------------------SNGAILVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + SF+ V+ + + +VG K+DL ++ ++ +
Sbjct: 85 ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER------------HVSIQEAE 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
S A+ +GA K+ SA KG++ +F + + ++
Sbjct: 133 SYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMI 165
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.7 bits (190), Expect = 1e-18
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E + +R L
Sbjct: 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K F + +S+
Sbjct: 73 ------------------------------------------------KNGQGFALVYSI 84
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
++F +++ +R P+ILVG K DL D++ + QG
Sbjct: 85 TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER------------VVGKEQGQ 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
++A++ +LE SA ++ + +F + +R +
Sbjct: 133 NLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.0 bits (183), Expect = 1e-17
Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F F++
Sbjct: 73 ------------------------------------------------RTGEGFLCVFAI 84
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
N SFE++ R P++LVG K DL + ++
Sbjct: 85 NNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQD------------ 132
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+ G + Y+E SA T++G++ F +R +
Sbjct: 133 -LARSYG-IPYIETSAKTRQGVEDAFYTLVREIR 164
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.7 bits (177), Expect = 1e-16
Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ L++ + F T+ + V +D + +WDTAGQE Y L P+
Sbjct: 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 76 YRG------------------------------------------------AQAAIVVYD 87
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ N SF + R P+ I L G K DL + + + + +
Sbjct: 88 ITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR------------AVDFQEAQ 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
S A + + ++E SA T + +F + +
Sbjct: 136 SYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 71.9 bits (175), Expect = 2e-16
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + + + F +Y PT D+Y V++DG+ + + + DTAGQEDY +R +
Sbjct: 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F FS
Sbjct: 74 ------------------------------------------------RSGEGFLCVFS- 84
Query: 121 VNPASFENVRAKWYPEVR--HHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ A + ++ + P +LVG K DL D + ++ +
Sbjct: 85 ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR------------QVSVEEA 132
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A + V Y+E SA T+ + VF + +R +
Sbjct: 133 KNRADQWN-VNYVETSAKTRANVDKVFFDLMREIR 166
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.0 bits (175), Expect = 2e-16
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 65/219 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANV--MVDGKPINLGLWDTAGQEDYDRLRPL 58
VGKT L+ Y + + +Y T+ ++ + K + +WDTAGQE + L
Sbjct: 12 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 71
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
Y + D + +
Sbjct: 72 FY------------------------------------------------RGADCCVLVY 83
Query: 119 SLVNPASFENVRAKWYPEVRH----HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPIT 174
+ N +SFEN+++ + H + P +++G K+D + K+ ++
Sbjct: 84 DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK-----------IVS 132
Query: 175 YPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+AK +G + SA + T F+E R+ L
Sbjct: 133 EKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.0 bits (175), Expect = 2e-16
Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 62/214 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F +Y PT+ D+Y+ VDG P L + DTAGQE++ +R
Sbjct: 16 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 75
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + F++
Sbjct: 76 ------------------------------------------------RAGHGFLLVFAI 87
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SF V + +R P++LVG K DL ++ + +
Sbjct: 88 NDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ------------VPRSEAS 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ V Y E SA + + F++ +RAV
Sbjct: 136 AFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVR 168
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.6 bits (161), Expect = 2e-14
Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 59/213 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG-KPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ +++ + +N F PT+ + + + +WDTAGQE + L P+
Sbjct: 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 73 YRN------------------------------------------------AQAALVVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ P SF R I LVG K+D+ + + +E +G
Sbjct: 85 VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVARE---------EGE 135
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+E G + E SA T + + VF +
Sbjct: 136 KLAEEKGL-LFFETSAKTGENVNDVFLGIGEKI 167
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.8 bits (159), Expect = 4e-14
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + + F +Y PT+ D+Y+ ++D + L + DTAGQE++ +R
Sbjct: 15 GVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMRE--- 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + F + FS+
Sbjct: 72 ---------------------------------------------QYMRTGEGFLLVFSV 86
Query: 121 VNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ SFE + K+ ++ P+IL+G K DL + +T +G
Sbjct: 87 TDRGSFEEIY-KFQRQILRVKDRDEFPMILIGNKADLDHQR------------QVTQEEG 133
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+A+++ Y+E SA + + F E +R +
Sbjct: 134 QQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIR 167
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.8 bits (159), Expect = 4e-14
Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 62/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLG-LWDTAGQEDYDRLRPLS 59
VGK+ ++ + ++F PT+ ++ + ++ +WDTAG E + L P+
Sbjct: 14 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 73
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + I +
Sbjct: 74 Y------------------------------------------------RGSAAAIIVYD 85
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ +F ++ +H PS + + G K DL D + +
Sbjct: 86 ITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR------------EVMERDAK 133
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
A I A ++E SA + +F E R +
Sbjct: 134 DYADSIHA-IFVETSAKNAININELFIEISRRI 165
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.2 bits (155), Expect = 2e-13
Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 59/212 (27%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + F YIPTV D Y + D L + DT G + ++ LS
Sbjct: 12 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSI 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + +
Sbjct: 72 SKG----------------------------------------------HAFILVYSITS 85
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ E++ S PI+LVG K D + + + +
Sbjct: 86 RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR------------EVQSSEAEA 133
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ ++E SA +K +F E +
Sbjct: 134 LARTWKC-AFMETSAKLNHNVKELFQELLNLE 164
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.7 bits (143), Expect = 7e-12
Identities = 49/215 (22%), Positives = 78/215 (36%), Gaps = 63/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L I + F +Y PT+ D+Y + +D + L + DTAGQE++ +R
Sbjct: 14 GVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 73
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D F I +S+
Sbjct: 74 ------------------------------------------------RTGDGFLIVYSV 85
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ ASFE+V +R S P+ILV K+DL + +T QG
Sbjct: 86 TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR------------KVTRDQGK 133
Query: 180 SMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVL 213
MA + + Y+E SA + F + +R +
Sbjct: 134 EMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIR 167
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.2 bits (139), Expect = 3e-11
Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 66/218 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPINLGLWDTAGQEDYDRLRPLS 59
VGKT L+ Y F +Y T+ ++ ++ D + + + +WDTAGQE
Sbjct: 12 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER-------- 63
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
V + D + F
Sbjct: 64 ----------------------------------------FQSLGVAFYRGADCCVLVFD 83
Query: 120 LVNPASFENVRAKWYPEVRHHCP----STPIILVGTKLDLRDDKETIEKLKEKKLAPITY 175
+ P +F+ + + + P + P +++G K+DL + +
Sbjct: 84 VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-------------QVAT 130
Query: 176 PQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + + Y E SA ++ F R L
Sbjct: 131 KRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 55.8 bits (133), Expect = 2e-10
Identities = 26/212 (12%), Positives = 45/212 (21%), Gaps = 61/212 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKT +L E + T+ V+ K I+ +WD GQ+ L +
Sbjct: 10 AAGKTTILYKLKLG----EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+
Sbjct: 66 ------------------------------------------------QNTQGLIFVVDS 77
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ R + + ++LV + + IT GL
Sbjct: 78 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLH 129
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ A + GL D +
Sbjct: 130 SLRHRN-WYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.8 bits (133), Expect = 2e-10
Identities = 44/215 (20%), Positives = 75/215 (34%), Gaps = 64/215 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L++ + T F EY PT+ Y +D + +++ + DTAGQED +
Sbjct: 12 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMR 71
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ F + + +
Sbjct: 72 W-------------------------------------------------GEGFVLVYDI 82
Query: 121 VNPASFEN-VRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE + K + + +ILVG K DL + ++ +G
Sbjct: 83 TDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR------------QVSTEEGE 130
Query: 180 SMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVL 213
+A E+ + ECSA T +G + +F E R V
Sbjct: 131 KLATELAC-AFYECSACTGEGNITEIFYELCREVR 164
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.0 bits (131), Expect = 3e-10
Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 65/214 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
GKT + + T F +Y+ T+ + + + PI +WDTAGQE + LR
Sbjct: 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 72
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y Q I F
Sbjct: 73 YIQ------------------------------------------------AQCAIIMFD 84
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + +++NV W+ ++ C + PI+L G K+D++D K + +
Sbjct: 85 VTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSI 129
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
++ ++Y + SA + + F R ++
Sbjct: 130 VFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 162
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.6 bits (122), Expect = 5e-09
Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 63/214 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPINLGLWDTAGQEDYDRLRPLS 59
AVGK+ ++ Y F +Y T+ ++ + V+ + + L LWDTAGQE++D +
Sbjct: 12 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 71
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + + FS
Sbjct: 72 Y------------------------------------------------RGAQACVLVFS 83
Query: 120 LVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ SFE + W +V P LV K+DL DD I +
Sbjct: 84 TTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDDS------------CIKNEEAE 130
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+AK + ++ S + VF L
Sbjct: 131 GLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHL 163
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 51.2 bits (121), Expect = 8e-09
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 3/106 (2%)
Query: 110 RCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKETIEKLKEK 168
+ + + + + + PI+++G K+D + +
Sbjct: 80 AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF 139
Query: 169 KLAPITYPQGLSMAKEIGA--VKYLECSALTQKGLKTVFDEAIRAV 212
L T +G KE+ A ++ CS L ++G F + +
Sbjct: 140 GLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (117), Expect = 2e-08
Identities = 42/212 (19%), Positives = 60/212 (28%), Gaps = 65/212 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLS 59
VGKTCL + FP T+ + V +DG+ I + LWDTAGQE + +
Sbjct: 12 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 71
Query: 60 YPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFS 119
Y + +
Sbjct: 72 YYRN-----------------------------------------------VHAVVFVYD 84
Query: 120 LVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ N ASF ++ A +H P ILVG K DLR +
Sbjct: 85 MTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTD------------LA 132
Query: 179 LSMAKEIGAVKYLECSALTQK---GLKTVFDE 207
A E SA ++ +F
Sbjct: 133 QKFADTHSM-PLFETSAKNPNDNDHVEAIFMT 163
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 48.8 bits (115), Expect = 7e-08
Identities = 26/213 (12%), Positives = 45/213 (21%), Gaps = 63/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L PT+ N + K + L +WD GQ Y
Sbjct: 27 GAGKTTILYRLQIGEVV-TTKPTIGFNV---ETLSYKNLKLNVWDLGGQTSIRPYWRCYY 82
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
Sbjct: 83 ------------------------------------------------ADTAAVIFVVDS 94
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + + ++ +++ K D E KE L
Sbjct: 95 TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKE---------LNL 145
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
K+ + SA+ +G+ D I +
Sbjct: 146 VELKDRS-WSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.4 bits (114), Expect = 1e-07
Identities = 26/227 (11%), Positives = 54/227 (23%), Gaps = 57/227 (25%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ + +PT D + + + D GQ R +
Sbjct: 12 ESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRSERRKWIHCF 66
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + D +
Sbjct: 67 ENV------------------------------------TSIMFLVALSEYDQVLVESDN 90
Query: 121 VNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
N E +A + + + ++ +IL K DL ++K L + +
Sbjct: 91 ENR--MEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDA 148
Query: 180 SMAKEIGAVKYL-------------ECSALTQKGLKTVFDEAIRAVL 213
A+E ++ A + ++ VF +L
Sbjct: 149 QAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 48.0 bits (113), Expect = 1e-07
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 109 KRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPST-PIILVGTKLDLRDDKETIEKLKE 167
+ D+ + FE + + S P+++ K DL E
Sbjct: 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE---- 137
Query: 168 KKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
I L ++ + CSALT +G++ + + V
Sbjct: 138 -----IAEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 47.0 bits (110), Expect = 2e-07
Identities = 24/210 (11%), Positives = 52/210 (24%), Gaps = 60/210 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT + + F + IPTV N + + + LWD GQ +
Sbjct: 12 YSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPRF-------- 60
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + + + +
Sbjct: 61 ---------------------------------------RSMWERYCRGVSAIVYMVDAA 81
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ + P++++G K DL + E +++ LS
Sbjct: 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK---------MNLS 132
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIR 210
++ + S + + I+
Sbjct: 133 AIQDRE-ICCYSISCKEKDNIDITLQWLIQ 161
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 5e-07
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRP 57
+VGK+ L I + F Y PT+ + ++ + V+G+ +L L DTAGQ++Y
Sbjct: 14 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ 70
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 3e-04
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 44 WDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 98
G + + + + G ++A+ A +LE SA + VF I
Sbjct: 112 IMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEA 165
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 4e-04
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+A+ A +LE SA + VF I
Sbjct: 135 LAESWNA-AFLESSAKENQTAVDVFRRIILEA 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.5 bits (106), Expect = 7e-07
Identities = 22/206 (10%), Positives = 41/206 (19%), Gaps = 54/206 (26%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT LL + PT + I +D G RL +
Sbjct: 10 NAGKTTLLHMLKNDRLA-TLQPTWHPTS---EELAIGNIKFTTFDLGGHIQARRLWKDYF 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+
Sbjct: 66 ------------------------------------------------PEVNGIVFLVDA 77
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+P F+ R + ++ + + +L+ + G
Sbjct: 78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL--GLLNTTGSQ 135
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFD 206
+ V+ CS + + G F
Sbjct: 136 RIEGQRPVEVFMCSVVMRNGYLEAFQ 161
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 7e-07
Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 61/215 (28%)
Query: 1 AVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPL 58
VGK+ L + + + D Y +MVDG+ + L D + +
Sbjct: 13 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN----- 67
Query: 59 SYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICF 118
+ + +
Sbjct: 68 -----------------------------------------EWLHDHCMQVGDAYLIVYS 86
Query: 119 SLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG 178
+ + + PIILVG K DL + ++ +G
Sbjct: 87 ITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCR------------EVSVSEG 134
Query: 179 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ A K++E SA Q +K +F+ +R V
Sbjct: 135 RACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVR 168
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 44.9 bits (105), Expect = 1e-06
Identities = 27/207 (13%), Positives = 44/207 (21%), Gaps = 63/207 (30%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
A GKT +L F+ V K + +WD GQ+ L Y
Sbjct: 22 AAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYY 77
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
Sbjct: 78 TG------------------------------------------------TQGLIFVVDC 89
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + R + + + I++ K DL D + E I GL
Sbjct: 90 ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE---------IQEKLGL 140
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFD 206
+ ++ A + GL
Sbjct: 141 TRIRDRN-WYVQPSCATSGDGLYEGLT 166
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 45.0 bits (105), Expect = 1e-06
Identities = 29/213 (13%), Positives = 53/213 (24%), Gaps = 63/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L ++ N E + T S + +WD GQE Y
Sbjct: 25 NAGKTTILYQFSMN----EVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 80
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ +
Sbjct: 81 ------------------------------------------------TNTEFVIVVVDS 92
Query: 121 VNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ R + Y + H +++ K D+++ E I+ L
Sbjct: 93 TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE---------ISQFLKL 143
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ K+ C ALT +GL + + +
Sbjct: 144 TSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 8e-06
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 111 CDVFQICFSLVNPASFENVRAKWYPEVRHHCP---STPIILVGTKLDLRDDKETIEKLKE 167
D FSL + SF+ V + LVGT+ +
Sbjct: 71 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR------ 124
Query: 168 KKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
+ + ++ ++ Y E A + VF E + V+
Sbjct: 125 ----VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 8e-06
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Query: 33 MVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECSALTQKGLKTVFD 92
G + L R+ ++ ++ Y E A + VF
Sbjct: 103 GRGGLALALVGTQDRISASSPRVV---GDARARALCADMKRCSYYETCATYGLNVDRVFQ 159
Query: 93 EAIRAVL 99
E + V+
Sbjct: 160 EVAQKVV 166
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 2e-04
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTA 47
GK+ L+ + T ++ T + Y ++VDG+ + + + A
Sbjct: 15 RSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEA 60
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 24/213 (11%), Positives = 50/213 (23%), Gaps = 63/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L + PT+ N ++ + L +WD GQ+ +
Sbjct: 12 NAGKTTILKKFNGEDVD-TISPTLGFNI---KTLEHRGFKLNIWDVGGQKSLRSYWRNYF 67
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D
Sbjct: 68 ------------------------------------------------ESTDGLIWVVDS 79
Query: 121 VNPASFENVRAKWYPEVRH-HCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ ++ + + + +++ K DL + +L I
Sbjct: 80 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH-- 137
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
+ CSA+T + L D + +
Sbjct: 138 --------WRIQGCSAVTGEDLLPGIDWLLDDI 162
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 3e-05
Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 61/213 (28%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
VGK+ L + G Y +++VDG+ +L ++D Q+ L
Sbjct: 11 GVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCM 69
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+
Sbjct: 70 AMG-----------------------------------------------DAYVIVYSVT 82
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
+ + + PIILVG K DL +E +G +
Sbjct: 83 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD------------EGRA 130
Query: 181 MAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213
A K++E SA ++ +F+ +R +
Sbjct: 131 CAVVFDC-KFIETSAALHHNVQALFEGVVRQIR 162
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 4e-05
Identities = 25/227 (11%), Positives = 46/227 (20%), Gaps = 60/227 (26%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ ++ G I K ++ ++D GQ + +
Sbjct: 12 ESGKSTIVKQMKIIHEAGTGIVE--------THFTFKDLHFKMFDVGGQRSERKKWIHCF 63
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ D +
Sbjct: 64 EGV---------------------TAIIFCVA-----------------LSDYDLVLAED 85
Query: 121 VNPASFENVRAKWYPEVRHHCPS-TPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ + + T IIL K DL ++K L
Sbjct: 86 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYE 145
Query: 180 SMAKEIGA-------------VKYLECSALTQKGLKTVFDEAIRAVL 213
A I + A K ++ VFD ++
Sbjct: 146 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 192
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 22/213 (10%), Positives = 43/213 (20%), Gaps = 63/213 (29%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT +L E + T+ V K + +WD G
Sbjct: 15 GAGKTTILYRLQVG----EVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRP------ 64
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
D
Sbjct: 65 ------------------------------------------YWRCYYSNTDAVIYVVDS 82
Query: 121 VNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGL 179
+ +++ + +++ K D+ + E GL
Sbjct: 83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS---------LGL 133
Query: 180 SMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212
K+ + + SA GL + + +
Sbjct: 134 PALKDRK-WQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (88), Expect = 2e-04
Identities = 29/236 (12%), Positives = 61/236 (25%), Gaps = 76/236 (32%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GKT L + T + + ++ D+ + + + + +L L D G E +
Sbjct: 10 DSGKTLLFVRLLTGQYR-DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 68
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
K
Sbjct: 69 -----------------------------------------------KSSARAVVFVVDS 81
Query: 121 VNPASFENVRAKWYPEVRHHCPST----PIILVGTKLDLRDDK--ETIEKLKEKKLAPIT 174
A++ +V + +++ K D+ K + I++ EK+L +
Sbjct: 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 141
Query: 175 YPQGLSMAKEIGA----------------------VKYLECSALTQKGLKTVFDEA 208
+ + + + V++LECSA +G D
Sbjct: 142 VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 197
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.3 bits (80), Expect = 0.003
Identities = 30/227 (13%), Positives = 59/227 (25%), Gaps = 57/227 (25%)
Query: 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSY 60
GK+ L PT + + K + + D GQ + +
Sbjct: 12 ESGKSTFLKQMR---IIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQRSERKRWFECF 65
Query: 61 PQTGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSL 120
+ + + + + I ++
Sbjct: 66 DSV---------------------TSILFLVSSSEFDQVLMEDRQTNRLTE-SLNIFETI 103
Query: 121 VNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180
VN F NV IIL K DL ++K + +K+ L P L
Sbjct: 104 VNNRVFSNV---------------SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLR 148
Query: 181 MAKEIGAVKYL--------------ECSALTQKGLKTVFDEAIRAVL 213
++ + +A+ + ++ VF + +L
Sbjct: 149 DVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 228 | |||
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.97 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.96 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.96 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.95 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.93 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.92 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.91 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.91 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.88 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.83 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.82 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.81 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.77 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.77 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.76 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.75 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.67 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.66 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.65 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.64 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.58 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.57 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.56 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.5 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.49 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.45 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.39 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.25 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.18 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.17 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.05 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.0 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.93 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.88 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.87 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 98.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.68 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.56 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.45 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.02 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.95 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 97.95 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.7 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.68 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.63 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 97.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.93 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 96.68 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 96.58 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 95.87 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.04 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.14 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 90.4 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.85 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 88.37 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 86.27 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.49 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 83.55 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.39 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 83.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 82.89 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 82.33 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 81.69 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 81.34 | |
| d1eg7a_ | 549 | Formyltetrahydrofolate synthetase {Moorella thermo | 81.14 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 80.17 |
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-36 Score=238.63 Aligned_cols=179 Identities=69% Similarity=1.160 Sum_probs=161.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|.+.+.||+++.+.....+++..+.+.+||++|++.+..+++.+++.+
T Consensus 13 ~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~----------------- 75 (191)
T d2ngra_ 13 AVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT----------------- 75 (191)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhccccc-----------------
Confidence 799999999999999999999999988888888999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+.+.|...+.+..++.|+++||||+|+.....
T Consensus 76 -------------------------------~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~ 124 (191)
T d2ngra_ 76 -------------------------------DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124 (191)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHH
T ss_pred -------------------------------ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccch
Confidence 9999999999999999998567777777778899999999999998877
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCVLL 228 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 228 (228)
..+.......+.++.+++..+++.++..+|+||||++|.||+++|+.++..++++.+. +++++|+||
T Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~~-k~~~~C~i~ 191 (191)
T d2ngra_ 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP-KKSRRCVLL 191 (191)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSCCST-TCCCSCCCC
T ss_pred hhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcCcCC-CCCCCCeEC
Confidence 7777777778899999999999998767999999999999999999999999876543 555668876
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-35 Score=228.27 Aligned_cols=166 Identities=56% Similarity=0.999 Sum_probs=153.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+.+.|.+.+.||+++.+.....+++..+.+.+||++|++.+..+++.+++++
T Consensus 12 ~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~----------------- 74 (177)
T d1kmqa_ 12 ACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT----------------- 74 (177)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccc-----------------
Confidence 799999999999999999999999988888889999999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++|+|||+++++||+.+.+.|...+.+..++.|++|||||+|+.....
T Consensus 75 -------------------------------~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 123 (177)
T d1kmqa_ 75 -------------------------------DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 123 (177)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHH
T ss_pred -------------------------------hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhh
Confidence 9999999999999999988667777887778899999999999998877
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
..+.......+.++.+++..+++++++.+|+||||++|.||+++|+.+++++++
T Consensus 124 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~ 177 (177)
T d1kmqa_ 124 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177 (177)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence 777777777789999999999999998899999999999999999999998874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-35 Score=229.99 Aligned_cols=167 Identities=65% Similarity=1.109 Sum_probs=152.6
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.||+++.+.+.+.+++..+.+.+||++|++.+..++..+++++
T Consensus 19 ~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a----------------- 81 (185)
T d2atxa1 19 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT----------------- 81 (185)
T ss_dssp TSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccc-----------------
Confidence 799999999999999999999999888888888899999999999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+.+...|...++...++.|+++||||+|+.+...
T Consensus 82 -------------------------------~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~ 130 (185)
T d2atxa1 82 -------------------------------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130 (185)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH
T ss_pred -------------------------------ceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchh
Confidence 9999999999999999887677878877778899999999999998776
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..........+.++.+++..+++.++..+|+||||++|.||+++|+.++++++.|
T Consensus 131 ~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il~P 185 (185)
T d2atxa1 131 TLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185 (185)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHcCC
Confidence 6666666667899999999999999977999999999999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-34 Score=223.29 Aligned_cols=167 Identities=95% Similarity=1.499 Sum_probs=155.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|.+.+.||+++.+...+..++..+.+.+||++|++.+..++..+++++
T Consensus 15 ~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------------- 77 (183)
T d1mh1a_ 15 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT----------------- 77 (183)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhccccc-----------------
Confidence 799999999999999999999999988888889999999999999999999999999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||+++++||+++...|+..++++..+.|++|||||+|+.....
T Consensus 78 -------------------------------~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~ 126 (183)
T d1mh1a_ 78 -------------------------------DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126 (183)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH
T ss_pred -------------------------------ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhh
Confidence 9999999999999999997568888888878899999999999998877
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
..+.......+.++..++..+++.++..+|+||||++|.||+++|.++++.++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 127 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (183)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred hhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence 7777777778889999999999999977999999999999999999999999976
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-33 Score=220.72 Aligned_cols=166 Identities=43% Similarity=0.858 Sum_probs=151.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|.+.|.||+++.+.+.+.+++..+.+.+||++|++.+...++.+++++
T Consensus 12 ~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 74 (179)
T d1m7ba_ 12 QCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS----------------- 74 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhh-----------------
Confidence 799999999999999999999999988888888999999999999999999999999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchH
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKE 160 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~ 160 (228)
|++++|||++|++||+.+.+.|...+....++.|++|||||+|+.....
T Consensus 75 -------------------------------~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (179)
T d1m7ba_ 75 -------------------------------DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 123 (179)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH
T ss_pred -------------------------------hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccch
Confidence 9999999999999999998567777777778999999999999988777
Q ss_pred HHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCC-HHHHHHHHHHHhcC
Q psy8274 161 TIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKG-LKTVFDEAIRAVLC 214 (228)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~-v~~lf~~l~~~i~~ 214 (228)
........+.+.++.+++..++++++..+|+||||++|.| |+++|+.+++.+++
T Consensus 124 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 124 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence 6666666777899999999999999877999999999985 99999999999875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-33 Score=214.51 Aligned_cols=151 Identities=28% Similarity=0.446 Sum_probs=139.7
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|.+.+.||++..|.+.+.+++..+.+.+||++|.+.+..++..++.++
T Consensus 14 ~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~----------------- 76 (167)
T d1xtqa1 14 SVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI----------------- 76 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSC-----------------
T ss_pred CcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhh-----------------
Confidence 799999999999999999999999888888899999999999999999999999999899888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.+.. .++|++|||||+|+...
T Consensus 77 -------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 124 (167)
T d1xtqa1 77 -------------------------------NGYILVYSVTSIKSFEVIK-VIHGKLLDMVGKVQIPIMLVGNKKDLHME 124 (167)
T ss_dssp -------------------------------CEEEEEEETTCHHHHHHHH-HHHHHHHHHHCSSCCCEEEEEECTTCGGG
T ss_pred -------------------------------hhhhhhcccchhhhhhhhh-hhhhhhhhcccccccceeeeccccccccc
Confidence 9999999999999999998 8988877653 47899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++++++ +|+||||++|.||+++|..+++.+.
T Consensus 125 ------------r~v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 125 ------------RVISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ------------cchhHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHHhc
Confidence 67999999999999995 8999999999999999999998874
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-33 Score=213.78 Aligned_cols=152 Identities=28% Similarity=0.448 Sum_probs=140.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|...+.||++. .+......++..+.+.+||++|++.+..+++.+++++
T Consensus 12 ~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---------------- 75 (164)
T d1z2aa1 12 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGA---------------- 75 (164)
T ss_dssp TSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccC----------------
Confidence 79999999999999999999999964 4567788899999999999999999999988888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+++++||+.+. .|+..+.++.++.|++|||||+|+.+.
T Consensus 76 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~Dl~~~- 121 (164)
T d1z2aa1 76 --------------------------------QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD- 121 (164)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGGGGGG-
T ss_pred --------------------------------ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccCCcccc-
Confidence 9999999999999999998 999999988888999999999999875
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|+++++++++
T Consensus 122 -----------~~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~lq 164 (164)
T d1z2aa1 122 -----------SCIKNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ 164 (164)
T ss_dssp -----------CSSCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred -----------eeeeehhhHHHHHHcCC-EEEEeccCCCcCHHHHHHHHHHHHhC
Confidence 67899999999999996 89999999999999999999998874
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=9.1e-33 Score=214.57 Aligned_cols=152 Identities=29% Similarity=0.511 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|...|.||+++.+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 14 ~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~----------------- 76 (168)
T d1u8za_ 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG----------------- 76 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHC-----------------
T ss_pred CcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhccccc-----------------
Confidence 799999999999999999999999999988889999999999999999999888888788877
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|++||..+. .|+..+.+.. ++.|++|||||+|+.+.
T Consensus 77 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piiivgnK~Dl~~~ 124 (168)
T d1u8za_ 77 -------------------------------EGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred -------------------------------ceeEEEeeccchhhhhhHH-HHHHHHHHhhCCCCCcEEEEecccccccc
Confidence 9999999999999999998 9999887653 57899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|.++++++..
T Consensus 125 ------------~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~~ 167 (168)
T d1u8za_ 125 ------------RQVSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ------------ccccHHHHHHHHHHcCC-eEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence 67899999999999995 89999999999999999999998864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-32 Score=212.84 Aligned_cols=152 Identities=32% Similarity=0.464 Sum_probs=140.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|.+.+.||+++.+.+.+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 14 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~----------------- 76 (169)
T d1x1ra1 14 GVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG----------------- 76 (169)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC-----------------
T ss_pred CcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhc-----------------
Confidence 799999999999999999999999988888889999999999999999999999988888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|++||..+. .|+..+.+.. .+.|++|||||+|+...
T Consensus 77 -------------------------------~~~llv~d~~d~~Sf~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~ 124 (169)
T d1x1ra1 77 -------------------------------DGFLIVYSVTDKASFEHVD-RFHQLILRVKDRESFPMILVANKVDLMHL 124 (169)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred -------------------------------cEEEEecccccchhhhccc-hhhHHHHhhccccCccEEEEecccchhhh
Confidence 9999999999999999998 8999887653 47899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|+|+||+++. ||+++|..+++.+++
T Consensus 125 ------------~~v~~e~~~~~~~~~~~-~~~e~Sak~~~~nV~~~F~~l~~~i~~ 168 (169)
T d1x1ra1 125 ------------RKVTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ 168 (169)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred ------------ceeehhhHHHHHHHcCC-EEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 67999999999999995 99999999886 999999999998875
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-32 Score=213.97 Aligned_cols=155 Identities=28% Similarity=0.472 Sum_probs=141.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.+|..+.+.+.+.+++..+.+.+||++|++.+..++..+++++
T Consensus 16 ~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~----------------- 78 (173)
T d2fn4a1 16 GVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG----------------- 78 (173)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC-----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccc-----------------
Confidence 799999999999999999999999888888899999999999999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. +|+..+.+. ..+.|++|||||+|+.+.
T Consensus 79 -------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~ 126 (173)
T d2fn4a1 79 -------------------------------HGFLLVFAINDRQSFNEVG-KLFTQILRVKDRDDFPVVLVGNKADLESQ 126 (173)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred -------------------------------eeeeeecccccccccchhh-hhhHHHHHHhccCCCceEEEEEeechhhc
Confidence 9999999999999999998 898887654 357899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 217 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~~ 217 (228)
+.++.+++..+++.+++ +|+||||++|.||+++|..+++.+.+.++
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~k~~~ 172 (173)
T d2fn4a1 127 ------------RQVPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRKYQE 172 (173)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred ------------cccchhhhhHHHHhcCC-EEEEEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence 66888999999999995 89999999999999999999999876544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.1e-32 Score=214.15 Aligned_cols=153 Identities=25% Similarity=0.443 Sum_probs=137.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.||+++.+.....+++..+.+.+||++|++.+...+..+++.+
T Consensus 12 ~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a----------------- 74 (171)
T d2erxa1 12 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKG----------------- 74 (171)
T ss_dssp TSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccce-----------------
Confidence 799999999999999999999999998888889999999999999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh---CCCCCEEEEEeCCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH---CPSTPIILVGTKLDLRD 157 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~ 157 (228)
|++++|||+++++||..+. .|+..+.+. ..++|++|||||+|+..
T Consensus 75 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilVgnK~Dl~~ 122 (171)
T d2erxa1 75 -------------------------------HAFILVYSITSRQSLEELK-PIYEQICEIKGDVESIPIMLVGNKCDESP 122 (171)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTTH-HHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred -------------------------------eEEEEEeecccccchhccc-chhhhhhhhhccCCCCcEEEEeecccccc
Confidence 9999999999999999998 888777653 25689999999999976
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
. +.++.+++..+++.+++ +|+||||++|.||+++|..+++.+.++
T Consensus 123 ~------------~~v~~~e~~~~~~~~~~-~~~e~Sak~~~~v~e~f~~l~~~~~~~ 167 (171)
T d2erxa1 123 S------------REVQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKRR 167 (171)
T ss_dssp G------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred c------------ccccHHHHHHHHHHcCC-eEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 5 67899999999999995 899999999999999999999876544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.2e-32 Score=213.83 Aligned_cols=152 Identities=24% Similarity=0.349 Sum_probs=124.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.+..+. .+.++.++.+.+.+.+++..+.+.+||++|++.+..++..+++++
T Consensus 11 ~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~----------------- 72 (168)
T d2gjsa1 11 GVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMG----------------- 72 (168)
T ss_dssp TSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSC-----------------
T ss_pred CcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhh-----------------
Confidence 79999999999987764 456777888888889999999999999999999999999899888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||+.+. .|+..+.... ..+|++|||||+|+.+.
T Consensus 73 -------------------------------d~~ilv~d~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 120 (168)
T d2gjsa1 73 -------------------------------DAYVIVYSVTDKGSFEKAS-ELRVQLRRARQTDDVPIILVGNKSDLVRS 120 (168)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHCC--CCCEEEEEECTTCGGG
T ss_pred -------------------------------hhhceeccccccccccccc-cccchhhcccccccceEEEeecccchhhh
Confidence 9999999999999999998 9999887765 46899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++..++..+++.+++ +|+||||++|.||+++|.++++.++..
T Consensus 121 ------------~~v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~~f~~l~~~i~~~ 164 (168)
T d2gjsa1 121 ------------REVSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIRLR 164 (168)
T ss_dssp ------------CCSCHHHHHHHHHHHTS-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ------------cchhHHHHHHHHHhcCC-EEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 67899999999999995 999999999999999999999988653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=5.4e-32 Score=209.63 Aligned_cols=152 Identities=30% Similarity=0.571 Sum_probs=131.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|.+.+.||.+..+ .+....++..+.+.+||++|++.+..+++.+++++
T Consensus 13 ~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~---------------- 76 (167)
T d1z08a1 13 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDS---------------- 76 (167)
T ss_dssp TSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCC----------------
Confidence 7999999999999999999999997555 45778889999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.... ...|++|||||+|+...
T Consensus 77 --------------------------------~~~i~v~d~~~~~Sf~~~~-~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 123 (167)
T d1z08a1 77 --------------------------------NGAILVYDITDEDSFQKVK-NWVKELRKMLGNEICLCIVGNKIDLEKE 123 (167)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred --------------------------------ceeEEEEeCCchhHHHhhh-hhhhhcccccccccceeeeccccccccc
Confidence 9999999999999999998 8887776554 57899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.++++.+++.+++ +|+||||++|.||+++|.++++++++
T Consensus 124 ------------~~v~~~e~~~~a~~~~~-~~~e~Sak~~~~v~e~F~~l~~~i~~ 166 (167)
T d1z08a1 124 ------------RHVSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 166 (167)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred ------------cccchHHHHHHHHHcCC-eEEEEecCCCcCHHHHHHHHHHHHhh
Confidence 67999999999999995 89999999999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.8e-32 Score=209.05 Aligned_cols=153 Identities=27% Similarity=0.490 Sum_probs=139.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|.+.+.||+++.+...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 13 ~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------------- 75 (167)
T d1c1ya_ 13 GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCccccccccccccccc-----------------
Confidence 799999999999999999999999988888888899999999999999999999888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||+.+. .|+..+.+. .++.|++|||||+|+...
T Consensus 76 -------------------------------~~~ilv~d~~~~~sf~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~ 123 (167)
T d1c1ya_ 76 -------------------------------QGFALVYSITAQSTFNDLQ-DLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred -------------------------------ceeEEeeeccchhhhHhHH-HHHHHHHHhcCCCCCeEEEEEEecCcccc
Confidence 9999999999999999998 888877654 357899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.++..+|+|+||++|.||+++|.+++++|.+
T Consensus 124 ------------~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~k 167 (167)
T d1c1ya_ 124 ------------RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167 (167)
T ss_dssp ------------CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHTC
T ss_pred ------------cccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhcC
Confidence 66888999999998755699999999999999999999998863
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.2e-32 Score=211.37 Aligned_cols=152 Identities=29% Similarity=0.440 Sum_probs=132.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.|.+.|.||++..|...+..++..+.+.+||++|++.+. .+..+++++
T Consensus 12 ~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~----------------- 73 (168)
T d2atva1 12 GVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWG----------------- 73 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhccc-----------------
Confidence 79999999999999999999999998888888889999999999999998764 334455556
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++++||..+. .|+..+... ..+.|++|||||+|+...
T Consensus 74 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 121 (168)
T d2atva1 74 -------------------------------EGFVLVYDITDRGSFEEVL-PLKNILDEIKKPKNVTLILVGNKADLDHS 121 (168)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------ccceeecccCCccchhhhh-hhcccccccccccCcceeeeccchhhhhh
Confidence 9999999999999999998 776655543 357999999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCC-CHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQK-GLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~-~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++++++ +|+|+||++|. ||+++|.++++.+.++
T Consensus 122 ------------r~V~~~e~~~~a~~~~~-~~~e~Saktg~gnV~e~F~~l~~~i~~~ 166 (168)
T d2atva1 122 ------------RQVSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCREVRRR 166 (168)
T ss_dssp ------------CCSCHHHHHHHHHHHTS-EEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred ------------ccCcHHHHHHHHHHhCC-eEEEEccccCCcCHHHHHHHHHHHHHHh
Confidence 67999999999999995 99999999998 5999999999988643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-31 Score=208.65 Aligned_cols=153 Identities=29% Similarity=0.521 Sum_probs=135.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.||.++.+...+.+++..+.+.+||++|++.+...++.+++.+
T Consensus 15 ~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------------- 77 (171)
T d2erya1 15 GVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG----------------- 77 (171)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCcccCcccccceeeeeeeccccccccccccccccccccccccccccc-----------------
Confidence 799999999999999999999999998888999999999999999999999888887777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.+. ....|++|||||+|+...
T Consensus 78 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~ 125 (171)
T d2erya1 78 -------------------------------EGFLLVFSVTDRGSFEEIY-KFQRQILRVKDRDEFPMILIGNKADLDHQ 125 (171)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTSSCCSEEEEEECTTCTTS
T ss_pred -------------------------------ceEEEeeccccccchhhHH-HHhHHHHhhcccCCCCEEEEEeccchhhh
Confidence 9999999999999999998 888776654 357899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +|+||||++|.||+++|.++++.+.+.
T Consensus 126 ------------~~v~~~~~~~~~~~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 126 ------------RQVTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIRKF 169 (171)
T ss_dssp ------------CSSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ------------ccchHHHHHHHHHHcCC-EEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 67899999999999995 899999999999999999999988643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-31 Score=207.66 Aligned_cols=151 Identities=31% Similarity=0.549 Sum_probs=138.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.+|+++.+.....+++..+.+.+||++|++.+...+..+++++
T Consensus 13 ~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a----------------- 75 (167)
T d1kaoa_ 13 GVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG----------------- 75 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC-----------------
T ss_pred CcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcc-----------------
Confidence 799999999999999999999999998888889999999999999999999888888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++++||..+. .|+..+.+.. +++|++|||||+|+.+.
T Consensus 76 -------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilvgnK~Dl~~~ 123 (167)
T d1kaoa_ 76 -------------------------------QGFILVYSLVNQQSFQDIK-PMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred -------------------------------cceeeeeeecchhhhhhhh-chhhhhhhhccCCCCCEEEEEEccchhhc
Confidence 9999999999999999998 8888877643 57899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +|+||||++|.||+++|.++++++.
T Consensus 124 ------------~~~~~~~~~~~~~~~~~-~~~e~Sak~g~~i~e~f~~i~~~i~ 165 (167)
T d1kaoa_ 124 ------------REVSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp ------------CCSCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred ------------ccchHHHHHHHHHHcCC-eEEEECCCCCcCHHHHHHHHHHHHc
Confidence 56888999999999995 8999999999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1e-30 Score=202.41 Aligned_cols=151 Identities=25% Similarity=0.462 Sum_probs=136.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|.+.+.+|.+..+. .....++....+.+||++|++.+..++..+++.+
T Consensus 14 ~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---------------- 77 (167)
T d1z0ja1 14 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGS---------------- 77 (167)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhc----------------
Confidence 79999999999999999999999966654 5667788889999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|..+. .|+..+.+.. +..|++|||||+|+.+.
T Consensus 78 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 124 (167)
T d1z0ja1 78 --------------------------------AAAIIVYDITKEETFSTLK-NWVRELRQHGPPSIVVAIAGNKCDLTDV 124 (167)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred --------------------------------cceEEEeeechhhhhhhHH-HhhhhhhhccCCcceEEEecccchhccc
Confidence 9999999999999999998 8887777655 57899999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.++++.+++.+++ +|+||||++|.||+++|.++++++.
T Consensus 125 ------------~~v~~~~~~~~~~~~~~-~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 125 ------------REVMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ------------cchhHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHhCC
Confidence 67899999999999995 8999999999999999999999873
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.9e-32 Score=210.75 Aligned_cols=150 Identities=25% Similarity=0.464 Sum_probs=129.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|.+.+.||++.. +.+.+.+++..+.+.+||++|+..+..+++.+++++
T Consensus 13 ~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 76 (170)
T d1i2ma_ 13 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA---------------- 76 (170)
T ss_dssp TSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccc----------------
Confidence 799999999999999999999999654 456777899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+++++||+.+. .|+..+.+..+++|++|||||+|+...
T Consensus 77 --------------------------------~~~ilv~d~~~~~Sf~~~~-~~~~~~~~~~~~~piilvgnK~Dl~~~- 122 (170)
T d1i2ma_ 77 --------------------------------QCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR- 122 (170)
T ss_dssp --------------------------------CEEEEEEETTSGGGGTTHH-HHHHHHHHHHCSCCEEEEEECCCCSCS-
T ss_pred --------------------------------cchhhccccccccccchhH-HHHHHHhhccCCCceeeecchhhhhhh-
Confidence 9999999999999999998 899988887788999999999999864
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ ..+++..+++.++ .+|+|+||++|.||+++|.++++.++.
T Consensus 123 -----------~--~~~~~~~~~~~~~-~~~~e~Sak~~~~v~e~f~~l~~~l~~ 163 (170)
T d1i2ma_ 123 -----------K--VKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIG 163 (170)
T ss_dssp -----------C--CTTTSHHHHSSCS-SEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred -----------h--hhhHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence 2 2234567888888 489999999999999999999998875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.5e-31 Score=203.58 Aligned_cols=151 Identities=30% Similarity=0.527 Sum_probs=135.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|...+.++++..+ ......++..+.+.+||++|++.+...+..++.++
T Consensus 10 ~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---------------- 73 (164)
T d1yzqa1 10 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDS---------------- 73 (164)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhcc----------------
Confidence 7999999999999999999999986444 56667788999999999999999999888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.||..+. +|+..+.+.. ++.|++|||||+|+.+.
T Consensus 74 --------------------------------~~~ilv~d~~~~~s~~~i~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (164)
T d1yzqa1 74 --------------------------------AAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 120 (164)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred --------------------------------ceEEEeeccccccchhhhH-hhHHHHHHhcCCCceEEEEecccchhhh
Confidence 9999999999999999998 8888777654 67999999999999865
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.+..+++..+++.+++ +|+||||++|.||+++|.++++++.
T Consensus 121 ------------~~~~~~~~~~~~~~~~~-~~~e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 121 ------------RQVSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred ------------hhhhHHHHHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHhhC
Confidence 56888999999999995 8999999999999999999999864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1e-30 Score=202.88 Aligned_cols=152 Identities=28% Similarity=0.541 Sum_probs=136.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-eccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.++.+ +.+...+..++..+.+.+||++|++.+..+++.+++++
T Consensus 15 ~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~a---------------- 78 (169)
T d3raba_ 15 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGA---------------- 78 (169)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTC----------------
T ss_pred CcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcC----------------
Confidence 7999999999999999999999886 44456778888899999999999999999999899988
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||+++++++..+. .|...+.+.. ...|+++|+||+|+...
T Consensus 79 --------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~ 125 (169)
T d3raba_ 79 --------------------------------MGFILMYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDE 125 (169)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCSCCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEECccchhhhhhh-hhhhhhhcccCCcceEEEEEeecccccc
Confidence 9999999999999999998 7777776654 57899999999998875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|+||||++|.||+++|+++++.+++
T Consensus 126 ------------~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~e 168 (169)
T d3raba_ 126 ------------RVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICE 168 (169)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred ------------cccchhhhHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 66888999999999995 89999999999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.3e-31 Score=203.93 Aligned_cols=152 Identities=24% Similarity=0.467 Sum_probs=136.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+.+.|...+.++.+.. +.+.+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 15 ~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~---------------- 78 (171)
T d2ew1a1 15 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA---------------- 78 (171)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcc----------------
Confidence 799999999999999998888888544 457788899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.+|..+. +|+..+.+.. ...|++|||||+|+.+.
T Consensus 79 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~ilvgnK~D~~~~ 125 (171)
T d2ew1a1 79 --------------------------------NALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLAER 125 (171)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------ceEEEeeecccchhhhhhh-hhhhhhcccccccccEEEEEeecccccc
Confidence 9999999999999999998 7777776654 57899999999998765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|++|||++|.||+++|.+++++++.
T Consensus 126 ------------~~v~~~~~~~~~~~~~~-~~~~~SAktg~gV~e~f~~l~~~l~~ 168 (171)
T d2ew1a1 126 ------------REVSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS 168 (171)
T ss_dssp ------------CSSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------cchhhhHHHHHHHhCCC-EEEEEccCCCCCHHHHHHHHHHHHHH
Confidence 56888999999999995 89999999999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-30 Score=201.85 Aligned_cols=151 Identities=30% Similarity=0.547 Sum_probs=135.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|...+.++....+ .....+++..+.+.+||++|++.+..++..+++++
T Consensus 14 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~---------------- 77 (166)
T d1z0fa1 14 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA---------------- 77 (166)
T ss_dssp TSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCC----------------
Confidence 7999999999999999999888885554 56778899999999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||+++++||..+. .|+..+.+.. +..|++++|||+|+...
T Consensus 78 --------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 124 (166)
T d1z0fa1 78 --------------------------------AGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKADLEAQ 124 (166)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------cEEEEEeccCchHHHHHHH-HHHHHHHhhccccceEEEEcccccchhh
Confidence 9999999999999999998 8888887765 57899999999999765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++.+++..+++.+++ +|+||||++|.||+++|.++++++.
T Consensus 125 ------------~~~~~~~~~~~~~~~~~-~~~e~Saktg~~v~e~f~~i~~~i~ 166 (166)
T d1z0fa1 125 ------------RDVTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIY 166 (166)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------cccHHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 56888899999999995 9999999999999999999998863
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1e-30 Score=202.22 Aligned_cols=151 Identities=32% Similarity=0.554 Sum_probs=138.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+++.|.+.+.+++++.+...+..++..+.+.+||++|++.+...++.++..+
T Consensus 13 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~----------------- 75 (166)
T d1ctqa_ 13 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG----------------- 75 (166)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcc-----------------
Confidence 799999999999999999999999998888888899999999999999999888777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++.||+.+. .|+..+.+.. +++|+++||||+|+..
T Consensus 76 -------------------------------~~~iiv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~- 122 (166)
T d1ctqa_ 76 -------------------------------EGFLCVFAINNTKSFEDIH-QYREQIKRVKDSDDVPMVLVGNKCDLAA- 122 (166)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSSCCEEEEEECTTCSC-
T ss_pred -------------------------------cccceeecccccccHHHHH-HHHHHHHHhcCCCCCeEEEEeccccccc-
Confidence 9999999999999999998 9999988753 5689999999999975
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.+++..+++.+++ +|+|+||++|.||+++|.++++++.+
T Consensus 123 ------------~~~~~~~~~~~~~~~~~-~~~e~Sak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 123 ------------RTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ------------ccccHHHHHHHHHHhCC-eEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence 46888899999999995 89999999999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.8e-30 Score=202.22 Aligned_cols=154 Identities=27% Similarity=0.510 Sum_probs=133.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|...+.++..... ......++..+.+.+||++|++.+..+++.++..+
T Consensus 13 ~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---------------- 76 (173)
T d2a5ja1 13 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA---------------- 76 (173)
T ss_dssp TSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC----------------
T ss_pred CcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhcc----------------
Confidence 7999999999999999988888885444 45667788899999999999999999999999888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|++||+.+. +|+..+.+.. +++|++|||||+|+...
T Consensus 77 --------------------------------d~~ilv~d~~~~~sf~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~ 123 (173)
T d2a5ja1 77 --------------------------------AGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESR 123 (173)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CEEEEEEeecChHHHHhHH-HHHHHHHHhCCCCCeEEEEecCCchhhh
Confidence 9999999999999999998 8888887764 57999999999998875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
+.+..+++..+++.+++ +|+||||++|.||+++|.++++.+++..
T Consensus 124 ------------~~~~~~~~~~~a~~~~~-~~~e~Sa~tg~~V~e~f~~i~~~i~~~~ 168 (173)
T d2a5ja1 124 ------------RDVKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYRKI 168 (173)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 66888999999999995 8999999999999999999999987543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.7e-30 Score=199.12 Aligned_cols=152 Identities=26% Similarity=0.488 Sum_probs=137.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|...+.+|.+..+. .....++..+.+.+||++|++.+..+++.+++++
T Consensus 16 ~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~---------------- 79 (170)
T d1r2qa_ 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA---------------- 79 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCc----------------
Confidence 79999999999999999999999976654 5667788899999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|..+. .|...+.+.. ++.|++|||||+|+.+.
T Consensus 80 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 126 (170)
T d1r2qa_ 80 --------------------------------QAAIVVYDITNEESFARAK-NWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------ceEEEEeccchhhHHHHHH-HHhhhhhhccCCCceEEeeccccccccc
Confidence 9999999999999999998 7777776554 68999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.++.++++.+++.+++ +|+||||++|.||+++|.++++++.+
T Consensus 127 ------------~~v~~e~~~~~~~~~~~-~~~e~SAk~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 127 ------------RAVDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred ------------ccccHHHHHHHHHhcCC-EEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 67999999999999995 89999999999999999999998875
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-29 Score=201.07 Aligned_cols=153 Identities=29% Similarity=0.559 Sum_probs=137.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccc-eeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.||.+..+. ..+.+++..+.+.+|||+|++.+..+++.+++++
T Consensus 16 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a---------------- 79 (194)
T d2bcgy1 16 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGS---------------- 79 (194)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTC----------------
T ss_pred CcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccC----------------
Confidence 79999999999999999999999977664 5678899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~ 158 (228)
+++|+|||++++++|..+. .|...+.+. ..+.|++|||||+|+.+.
T Consensus 80 --------------------------------~~~i~v~d~t~~~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~~~~ 126 (194)
T d2bcgy1 80 --------------------------------HGIIIVYDVTDQESFNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDK 126 (194)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred --------------------------------CEEEEEEeCcchhhhhhHh-hhhhhhhhcccCCceEEEEEeccccccc
Confidence 9999999999999999998 777777654 467899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.++...+++..++ +|+|+||++|.||+++|.++++.+...
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~e~SAk~g~gi~e~f~~l~~~i~~~ 170 (194)
T d2bcgy1 127 ------------RVVEYDVAKEFADANKM-PFLETSALDSTNVEDAFLTMARQIKES 170 (194)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------cchhHHHHhhhhhccCc-ceEEEecCcCccHHHHHHHHHHHHHHH
Confidence 66888999999999994 899999999999999999999887753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.9e-30 Score=200.12 Aligned_cols=156 Identities=28% Similarity=0.506 Sum_probs=122.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecccee-EE-EcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VM-VDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~-~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+.+|.+..+... .. .+...+.+.+||++|++.+...+..+++.+
T Consensus 12 ~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~--------------- 76 (175)
T d1ky3a_ 12 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA--------------- 76 (175)
T ss_dssp TSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTC---------------
T ss_pred CcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhcc---------------
Confidence 7999999999999999999998886655433 22 345567899999999999999999999988
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKL 153 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~ 153 (228)
+++++|||++++.||..+. .|+..+.... .++|++|||||+
T Consensus 77 ---------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilv~nK~ 122 (175)
T d1ky3a_ 77 ---------------------------------DCCVLVYDVTNASSFENIK-SWRDEFLVHANVNSPETFPFVILGNKI 122 (175)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred ---------------------------------ceEEEEeecccccccchhh-hcchhhhhhhhhcccccCcEEEEeccc
Confidence 9999999999999999988 9998876531 368999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
|+.+.. +.++.+++..+++.++..+|+||||++|.||+++|+++++.+++++
T Consensus 123 Dl~~~~-----------~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~ 174 (175)
T d1ky3a_ 123 DAEESK-----------KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 174 (175)
T ss_dssp TSCGGG-----------CCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred chhhhh-----------cchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence 998652 5688889999999998678999999999999999999999887643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=7.3e-30 Score=197.94 Aligned_cols=154 Identities=27% Similarity=0.517 Sum_probs=136.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|.+.+.||.+..+ .+.+..++..+.+.+||++|++.+..+++.++..+
T Consensus 13 ~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~---------------- 76 (170)
T d1ek0a_ 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNA---------------- 76 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhcc----------------
Confidence 7999999999999999999999997766 46788899999999999999999988888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++++.||..+. .|+..+.... ...|+++|+||+|+.+.
T Consensus 77 --------------------------------~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~v~nk~d~~~~ 123 (170)
T d1ek0a_ 77 --------------------------------QAALVVYDVTKPQSFIKAR-HWVKELHEQASKDIIIALVGNKIDMLQE 123 (170)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred --------------------------------ceEEEEEeCCcccchhhhh-hhhhhhccccccccceeeeecccccccc
Confidence 9999999999999999998 7777666554 57899999999998653
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.. .+.++.+++..+++.+++ +|+|+||++|.||+++|..+++++.
T Consensus 124 ~~---------~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 124 GG---------ERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp SC---------CCCSCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred cc---------hhhhhHHHHHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHhc
Confidence 21 367999999999999996 9999999999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.4e-29 Score=193.61 Aligned_cols=152 Identities=30% Similarity=0.526 Sum_probs=125.1
Q ss_pred CCChhhhHHhhhhCCCCCCC-Cceeeec-cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEY-IPTVFDN-YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~-~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|+++.|...+ .++++.. +...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 16 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~--------------- 80 (170)
T d2g6ba1 16 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA--------------- 80 (170)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC---------------
T ss_pred CcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCC---------------
Confidence 79999999999999986554 4555444 456788899999999999999999999999999998
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRD 157 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~ 157 (228)
|++++|||+++++||..+. .|+..+.+.. ...|+++|+||+|+..
T Consensus 81 ---------------------------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~~k~d~~~ 126 (170)
T d2g6ba1 81 ---------------------------------HALLLLYDVTNKASFDNIQ-AWLTEIHEYAQHDVALMLLGNKVDSAH 126 (170)
T ss_dssp ---------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred ---------------------------------ceeEEEecCCcccchhhhh-hhhhhhhhccCCCceEEEEEeeechhh
Confidence 9999999999999999998 6666665544 5789999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
. +.++.+++..+++.+++ +|+|+||++|.||+++|.++++.+.+
T Consensus 127 ~------------~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gi~e~f~~l~~~i~k 170 (170)
T d2g6ba1 127 E------------RVVKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKR 170 (170)
T ss_dssp C------------CCSCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred c------------ccccHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHcCC
Confidence 5 67899999999999995 99999999999999999999998763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.2e-30 Score=198.69 Aligned_cols=153 Identities=27% Similarity=0.481 Sum_probs=136.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|.+.+.+|.+..+ ...+..++..+.+.+||++|++.+..++..+++.+
T Consensus 15 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---------------- 78 (174)
T d2bmea1 15 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA---------------- 78 (174)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhC----------------
Confidence 7999999999999999999999986655 45677889999999999999999999888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||.+++++|..+. .|+..+.... ++.|++|||||+|+...
T Consensus 79 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~D~~~~ 125 (174)
T d2bmea1 79 --------------------------------AGALLVYDITSRETYNALT-NWLTDARMLASQNIVIILCGNKKDLDAD 125 (174)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred --------------------------------CEEEEEEecccchhHHHHh-hhhcccccccCCceEEEEEEecccccch
Confidence 9999999999999999998 8888777664 57999999999998765
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+..+++..+++.+++ +|+||||++|.||+++|.+++++++.+
T Consensus 126 ------------~~~~~~~~~~~~~~~~~-~~~e~Sak~~~gi~e~f~~l~~~i~~~ 169 (174)
T d2bmea1 126 ------------REVTFLEASRFAQENEL-MFLETSALTGENVEEAFVQCARKILNK 169 (174)
T ss_dssp ------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ------------hchhhhHHHHHHHhCCC-EEEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence 56888889999999994 899999999999999999999998754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-29 Score=196.66 Aligned_cols=152 Identities=30% Similarity=0.505 Sum_probs=132.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeee-ccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.++.+. .+...+.+++..+.+.+||++|++.+..++..+++++
T Consensus 14 ~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~---------------- 77 (175)
T d2f9la1 14 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGA---------------- 77 (175)
T ss_dssp TSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhcc----------------
Confidence 79999999999999999888888754 4466778899999999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||+++++||..+. .|+..+.++. +++|++|||||+|+.+.
T Consensus 78 --------------------------------~~~i~v~d~~~~~S~~~~~-~~~~~i~~~~~~~~piilvgnK~Dl~~~ 124 (175)
T d2f9la1 78 --------------------------------VGALLVYDIAKHLTYENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 124 (175)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------------CeEEEEEECCCcccchhHH-HHHHHHHHhcCCCCcEEEEEeeeccccc
Confidence 9999999999999999998 8888887765 57899999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+....+.+..+.+.++ .+|+|+||++|.||+++|+++++.+.+
T Consensus 125 ------------~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 125 ------------RAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp ------------CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------ccchHHHHHHhhcccC-ceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 4567777788888888 599999999999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.1e-29 Score=194.48 Aligned_cols=152 Identities=30% Similarity=0.562 Sum_probs=131.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||++||+++.|.+.+.+|++..+ .....+++..+.+.+||++|+......+...+..+
T Consensus 16 ~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~---------------- 79 (174)
T d1wmsa_ 16 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS---------------- 79 (174)
T ss_dssp TSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC----------------
T ss_pred CCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhcc----------------
Confidence 7999999999999999999999996655 46677899999999999999988888888777777
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
++++++||++++.||+.+. .|++.+.... +..|++|||||+|
T Consensus 80 --------------------------------~~~i~~~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~piilVgnK~D 126 (174)
T d1wmsa_ 80 --------------------------------DCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNKID 126 (174)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred --------------------------------ceEEEEEeeecccccchhh-hHHHHHHHHhccccCCCceEEEeccccc
Confidence 9999999999999999998 8988876542 3589999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+ +.++.+++..++++.+..+|+||||++|.||+++|++++++++.
T Consensus 127 l~~-------------~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 127 ISE-------------RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp CSS-------------CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhh-------------ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence 975 56899999999999876799999999999999999999999874
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=2.3e-29 Score=195.80 Aligned_cols=152 Identities=28% Similarity=0.578 Sum_probs=107.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.+|++..+ .+.+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 16 ~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~---------------- 79 (173)
T d2fu5c1 16 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA---------------- 79 (173)
T ss_dssp CC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCC----------------
Confidence 7999999999999999989899986544 56788899999999999999999999999999998
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
|++|+|||++++.||..+. .|...+.... .+.|+++|+||+|+...
T Consensus 80 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~iilv~~k~D~~~~ 126 (173)
T d2fu5c1 80 --------------------------------MGIMLVYDITNEKSFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDK 126 (173)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------------CEEEEEEECCChhhHHHHH-HHHHHhhhhccCCceEEEEEecccchhh
Confidence 9999999999999999998 8878877554 57999999999999875
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+....+++..++..+++ +|++|||++|+||+++|.++++.+..
T Consensus 127 ------------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~gv~e~f~~l~~~i~~ 169 (173)
T d2fu5c1 127 ------------RQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKA 169 (173)
T ss_dssp ------------CCSCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHhcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 55777889999999995 89999999999999999999998853
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.9e-29 Score=195.25 Aligned_cols=151 Identities=27% Similarity=0.383 Sum_probs=124.6
Q ss_pred CCChhhhHHhhhhCCCCC-CCCcee-eeccceeEEEcCeEEeeeeeeCCC---CcccccCCCCccccccchhHHhhcchh
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTV-FDNYSANVMVDGKPINLGLWDTAG---QEDYDRLRPLSYPQTGLSMAKEIGAVK 75 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (228)
|||||||+++|..+.+.. .+.+|+ .+.+.+.+.+++..+.+.+||+++ ++.+ ++..+++++
T Consensus 13 ~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~------------ 78 (172)
T d2g3ya1 13 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVG------------ 78 (172)
T ss_dssp TSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCC------------
T ss_pred CcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--ccccccccc------------
Confidence 799999999999877642 333444 556778889999999999998764 4444 445566777
Q ss_pred hhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCC
Q psy8274 76 YLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKL 153 (228)
Q Consensus 76 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~ 153 (228)
|++|+|||+++++||..+. +|+..+.... +++|++|||||+
T Consensus 79 ------------------------------------~~~ilvfd~t~~~s~~~~~-~~~~~i~~~~~~~~~piilvgnK~ 121 (172)
T d2g3ya1 79 ------------------------------------DAYLIVYSITDRASFEKAS-ELRIQLRRARQTEDIPIILVGNKS 121 (172)
T ss_dssp ------------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHTSGGGTTSCEEEEEECT
T ss_pred ------------------------------------ceeeeeecccccchhhhhh-hhhhhhhhccccCCceEEEEeccc
Confidence 9999999999999999998 8888877543 579999999999
Q ss_pred CCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 154 DLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 154 Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|+.+. +.++.++++.+++.+++ +|+||||++|.||+++|..+++++..+
T Consensus 122 Dl~~~------------~~v~~~~~~~~a~~~~~-~~~e~Sak~g~~i~~~f~~l~~~i~~r 170 (172)
T d2g3ya1 122 DLVRC------------REVSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRLR 170 (172)
T ss_dssp TCGGG------------CCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccc------------ccccHHHHHHHHHHcCC-eEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence 99875 67899999999999995 999999999999999999999988654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.2e-29 Score=193.32 Aligned_cols=151 Identities=20% Similarity=0.276 Sum_probs=128.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|. .+.++.++.+.+.+.+++..+.+.+||++|+..+. +++++
T Consensus 15 ~vGKTsLi~~~~~~~f~-~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~a----------------- 71 (175)
T d2bmja1 15 RSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWA----------------- 71 (175)
T ss_dssp TTTHHHHHHHHHHSCCC-CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHC-----------------
T ss_pred CCCHHHHHHHHHhCCCC-CcCCccceeEEEEeecCceEEEEEEeecccccccc-----ccccc-----------------
Confidence 79999999999999986 45677788888888999999999999999987543 55666
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC----CCCCEEEEEeCCCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC----PSTPIILVGTKLDLR 156 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~----~~~piilv~nK~Dl~ 156 (228)
|++|+|||+++++||+.+. .|+..+...+ +.+|+++|+||.|+.
T Consensus 72 -------------------------------d~~ilVfd~~~~~Sf~~~~-~~~~~i~~~~~~~~~~~pi~lV~~k~d~d 119 (175)
T d2bmja1 72 -------------------------------DAVIFVFSLEDENSFQAVS-RLHGQLSSLRGEGRGGLALALVGTQDRIS 119 (175)
T ss_dssp -------------------------------SEEEEEEETTCHHHHHHHH-HHHHHHHHHCC--CCCCEEEEEEECTTCC
T ss_pred -------------------------------ceeEEEeecccchhhhhhH-HHHHHHHHHhhcccCCccEEEEeeecCcc
Confidence 9999999999999999998 8988887553 357999999999987
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.... +.++.+++..++......+|+||||++|.||+++|..+++.++..+
T Consensus 120 ~~~~----------~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 169 (175)
T d2bmja1 120 ASSP----------RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169 (175)
T ss_dssp SSSC----------CCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred hhhh----------cchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence 5432 6788899999987764469999999999999999999999887543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5e-30 Score=201.65 Aligned_cols=153 Identities=31% Similarity=0.529 Sum_probs=133.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEc----------CeEEeeeeeeCCCCcccccCCCCccccccchhHH
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVD----------GKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAK 69 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~ 69 (228)
|||||||+++|+++.|...+.++.+..+ ...+.++ +..+.+.+||++|++.+..+++.+++++
T Consensus 15 ~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~------ 88 (186)
T d2f7sa1 15 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA------ 88 (186)
T ss_dssp TSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC------
T ss_pred CcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhcC------
Confidence 7999999999999999999888886655 3444443 3357899999999999999998888888
Q ss_pred hhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEE
Q psy8274 70 EIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPII 147 (228)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~pii 147 (228)
|++|+|||++++.+|+.+. .|+..+..+. +..|++
T Consensus 89 ------------------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~ii 125 (186)
T d2f7sa1 89 ------------------------------------------MGFLLMFDLTSQQSFLNVR-NWMSQLQANAYCENPDIV 125 (186)
T ss_dssp ------------------------------------------CEEEEEEETTCHHHHHHHH-HHHHTCCCCCTTTCCEEE
T ss_pred ------------------------------------------CEEEEEEeccccccceeee-eccchhhhhccCCCceEE
Confidence 9999999999999999998 8988777653 468899
Q ss_pred EEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 148 LVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 148 lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
|||||+|+... +.++.+++..+++.+++ +|+|+||++|.||+++|+++++.+++.
T Consensus 126 lv~nK~Dl~~~------------~~v~~~e~~~~~~~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~~k 180 (186)
T d2f7sa1 126 LIGNKADLPDQ------------REVNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMKR 180 (186)
T ss_dssp EEEECTTCGGG------------CCSCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEeeeccchhh------------hcchHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999875 67999999999999995 899999999999999999999988753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-28 Score=189.86 Aligned_cols=152 Identities=28% Similarity=0.550 Sum_probs=136.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.++.+..+ .+.+.+++..+.+.+||++|++.+..++..++..+
T Consensus 17 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 80 (177)
T d1x3sa1 17 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA---------------- 80 (177)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcC----------------
Confidence 7999999999999999988888885554 46678899999999999999999998888888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRD 157 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~ 157 (228)
|++++|||++++.+|..+. .|+..+.+.. ...|+++++||.|...
T Consensus 81 --------------------------------~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~i~~~~nk~d~~~ 127 (177)
T d1x3sa1 81 --------------------------------QGVILVYDVTRRDTFVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN 127 (177)
T ss_dssp --------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred --------------------------------CEEEEEEECCCccccccch-hhhhhhcccccccceeeEEEeecccccc
Confidence 9999999999999999998 8888887765 3588999999999875
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.++.+++..+++.+++ +|+++||++|.||+++|++++++++++
T Consensus 128 -------------~~v~~~~~~~~~~~~~~-~~~e~Sa~tg~gv~e~f~~l~~~l~~~ 171 (177)
T d1x3sa1 128 -------------REVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQT 171 (177)
T ss_dssp -------------CCSCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred -------------ccccHHHHHHHHHHCCC-EEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence 56889999999999995 899999999999999999999999864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-28 Score=189.30 Aligned_cols=151 Identities=28% Similarity=0.595 Sum_probs=129.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++
T Consensus 12 ~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---------------- 75 (166)
T d1g16a_ 12 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGA---------------- 75 (166)
T ss_dssp TSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTE----------------
T ss_pred CcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC----------------
Confidence 7999999999999999999999997666 47788899999999999999999999999999888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||.++++||+.+. .|+..+.... ...|++++++|.|+..
T Consensus 76 --------------------------------~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~i~~~~k~d~~~- 121 (166)
T d1g16a_ 76 --------------------------------MGIILVYDITDERTFTNIK-QWFKTVNEHANDEAQLLLVGNKSDMET- 121 (166)
T ss_dssp --------------------------------EEEEEEEETTCHHHHHTHH-HHHHHHHHHSCTTCEEEEEEECTTCTT-
T ss_pred --------------------------------CEEEEEEECCCccCHHHHH-hhhhhhhccccCcceeeeecchhhhhh-
Confidence 9999999999999999998 7776666665 4688999999999876
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+.+..+++..+++.++ .+|++|||++|.||+++|+++++.+.+
T Consensus 122 ------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 122 ------------RVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp ------------CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ------------hhhhHHHHHHHHHhcC-CeEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 4577889999999999 599999999999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=5.3e-28 Score=189.74 Aligned_cols=153 Identities=26% Similarity=0.516 Sum_probs=134.0
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.|...+.||++..+ .+.....+..+.+.+||++|+..+...+..++..+
T Consensus 12 ~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~---------------- 75 (184)
T d1vg8a_ 12 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGA---------------- 75 (184)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTC----------------
T ss_pred CcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCc----------------
Confidence 7999999999999999999999996544 56777888899999999999999999999888888
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-----CCCCEEEEEeCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-----PSTPIILVGTKLD 154 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-----~~~piilv~nK~D 154 (228)
++++++||++++.+|..+. .|++.+.... .++|++|||||+|
T Consensus 76 --------------------------------~~~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ip~ilv~nK~D 122 (184)
T d1vg8a_ 76 --------------------------------DCCVLVFDVTAPNTFKTLD-SWRDEFLIQASPRDPENFPFVVLGNKID 122 (184)
T ss_dssp --------------------------------SEEEEEEETTCHHHHHTHH-HHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred --------------------------------cEEEEeecccchhhhhcch-hhHHHHHHHhccccccCCCEEEEEEeec
Confidence 9999999999999999998 9998776542 3589999999999
Q ss_pred CCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 155 LRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 155 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
+.+ +.+..++...++...+..+|+||||++|.||+++|.++++.+++.
T Consensus 123 l~~-------------~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~ 170 (184)
T d1vg8a_ 123 LEN-------------RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 170 (184)
T ss_dssp SSC-------------CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccc-------------cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhc
Confidence 976 347777888888776557999999999999999999999988764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=3.4e-28 Score=187.27 Aligned_cols=147 Identities=29% Similarity=0.508 Sum_probs=128.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeecc-ceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||++||+++.|...+.++.+..+ .....+++....+.+||++|...+.. .++.++.++
T Consensus 12 ~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 76 (165)
T d1z06a1 12 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV--------------- 76 (165)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC---------------
T ss_pred CcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCC---------------
Confidence 7999999999999999999999987665 46778889999999999999877654 456667777
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLR 156 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~ 156 (228)
|++++|||++|++||+.+. .|+..+.++. +++|++|||||+|+.
T Consensus 77 ---------------------------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~pi~lvgnK~Dl~ 122 (165)
T d1z06a1 77 ---------------------------------HAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDLR 122 (165)
T ss_dssp ---------------------------------CEEEEEEETTCHHHHHTHH-HHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ---------------------------------CceEEEEEeehhhhhhhhh-hhhHHHHhhccCCCCeEEEEeccccch
Confidence 9999999999999999998 8998887764 478999999999998
Q ss_pred CchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccC---CCCHHHHHHHHH
Q psy8274 157 DDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALT---QKGLKTVFDEAI 209 (228)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~---~~~v~~lf~~l~ 209 (228)
+. +.++.+++..+++.+++ +|+||||++ +.||+++|.+++
T Consensus 123 ~~------------~~v~~~~~~~~~~~~~~-~~~e~SAkt~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 123 SA------------IQVPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLA 165 (165)
T ss_dssp GG------------CCSCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC
T ss_pred hc------------cchhHHHHHHHHHHCCC-EEEEEecccCCcCcCHHHHHHHhC
Confidence 75 66999999999999996 899999997 569999999873
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.93 E-value=6.8e-27 Score=180.08 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=115.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+.+.+.||++..+. .++...+.+.+||++|++.+...+..++..+
T Consensus 12 ~~GKTsLl~~l~~~~~~~~~~~T~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----------------- 71 (164)
T d1zd9a1 12 YSGKTTFVNVIASGQFNEDMIPTVGFNMR---KITKGNVTIKLWDIGGQPRFRSMWERYCRGV----------------- 71 (164)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEE---EEEETTEEEEEEEECCSHHHHTTHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHHcCCCCCcccccceeeee---eeeeeeEEEEEeecccccccccccccccccc-----------------
Confidence 79999999999999999899999875543 2333457899999999999988888888887
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhh-hC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRH-HC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~-~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++++++|..+. .|+..+.+ .. +++|++||+||+|+.+.
T Consensus 72 -------------------------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~ 119 (164)
T d1zd9a1 72 -------------------------------SAIVYMVDAADQEKIEASK-NELHNLLDKPQLQGIPVLVLGNKRDLPGA 119 (164)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------chhhcccccccccccchhh-hhhhhhhhhhcccCCcEEEEEeccccchh
Confidence 9999999999999999998 56555543 32 57999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
....+ +....+..+++..+ .+++++||++|+||+++|+++++.+
T Consensus 120 ~~~~~---------i~~~~~~~~~~~~~-~~~~e~Sa~~g~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 120 LDEKE---------LIEKMNLSAIQDRE-ICCYSISCKEKDNIDITLQWLIQHS 163 (164)
T ss_dssp CCHHH---------HHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhHHH---------HHHHHHHHHHHhCC-CEEEEEeCcCCcCHHHHHHHHHHcc
Confidence 22111 11111112222334 5899999999999999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.92 E-value=5e-25 Score=169.30 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=112.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+. .+.||.+.... .++...+.+.+||++|++.++..+..++..+
T Consensus 12 ~~GKTsLi~~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~----------------- 70 (165)
T d1ksha_ 12 NAGKTTILKKFNGEDVD-TISPTLGFNIK---TLEHRGFKLNIWDVGGQKSLRSYWRNYFEST----------------- 70 (165)
T ss_dssp TSSHHHHHHHHTTCCCS-SCCCCSSEEEE---EEEETTEEEEEEEECCSHHHHTTGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHcCCCCC-cccceEeeeee---eccccccceeeeecCcchhhhhHHHhhhhhh-----------------
Confidence 79999999999987764 56677653322 2334457899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||++|..++..+.+.|...+.+.. .+.|++||+||+|+.+..
T Consensus 71 -------------------------------~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 119 (165)
T d1ksha_ 71 -------------------------------DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 119 (165)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -------------------------------hcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc
Confidence 999999999999999998855555554433 579999999999997642
Q ss_pred HHHHHHhhccCccccHHHHHHH-----HHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSM-----AKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ .++.... .+..+ .++++|||++|+||+++|+++++++..
T Consensus 120 ~--------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~e~~~~l~~~i~~ 164 (165)
T d1ksha_ 120 S--------------CNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGIDWLLDDISS 164 (165)
T ss_dssp C--------------HHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred C--------------HHHHHHHHHhhhhhcCC-CEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 2 1111111 11123 479999999999999999999998864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.91 E-value=6.3e-26 Score=177.31 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=106.5
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|..+.+. ...||.+... ..++...+.+.+||++|++.+..++..++..+
T Consensus 27 ~vGKTsLi~~l~~~~~~-~~~~t~~~~~---~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 85 (182)
T d1moza_ 27 GAGKTTILYRLQIGEVV-TTKPTIGFNV---ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT----------------- 85 (182)
T ss_dssp TSSHHHHHHHTCCSEEE-EECSSTTCCE---EEEEETTEEEEEEEEC----CCTTGGGTTTTE-----------------
T ss_pred CCCHHHHHHHHhcCCCC-ccccccceEE---EEEeeCCEEEEEEecccccccchhHHhhhccc-----------------
Confidence 79999999999887764 3334443222 23333457889999999999999999999988
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHH-HhhhC-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPE-VRHHC-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~-l~~~~-~~~piilv~nK~Dl~~~ 158 (228)
+++++|||++|+.++..+. .|+.. +.+.. .+.|++||+||+|+.+.
T Consensus 86 -------------------------------~~ii~v~d~~d~~s~~~~~-~~l~~~~~~~~~~~~piliv~NK~Dl~~~ 133 (182)
T d1moza_ 86 -------------------------------AAVIFVVDSTDKDRMSTAS-KELHLMLQEEELQDAALLVFANKQDQPGA 133 (182)
T ss_dssp -------------------------------EEEEEEEETTCTTTHHHHH-HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred -------------------------------eeEEEEeeecccccchhHH-HHHHHHHHhhccCCcceEEEEEeeccccc
Confidence 9999999999999999988 55544 44333 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
.+..+ +....+...+...+ .++++|||++|+||+++|+++++.+.+
T Consensus 134 ~~~~~---------i~~~~~~~~~~~~~-~~~~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 134 LSASE---------VSKELNLVELKDRS-WSIVASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp CCHHH---------HHHHTTTTTCCSSC-EEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCHHH---------HHHHHHHHHHhhCC-CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 21111 11111111222334 579999999999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.91 E-value=2.6e-25 Score=172.53 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=106.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.|... .++.+... . .++...+.+.+||++|++.++..+..++..+
T Consensus 26 ~vGKSsLi~~l~~~~~~~~-~~~~~~~~-~--~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~----------------- 84 (176)
T d1fzqa_ 26 NAGKTTLLKQLASEDISHI-TPTQGFNI-K--SVQSQGFKLNVWDIGGQRKIRPYWRSYFENT----------------- 84 (176)
T ss_dssp TSSHHHHHHHHCCSCCEEE-EEETTEEE-E--EEEETTEEEEEEECSSCGGGHHHHHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCcc-eeeeeeeE-E--EeccCCeeEeEeeccccccchhHHHHHhhcc-----------------
Confidence 7999999999999887422 23332211 2 2333447899999999999988888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
|++++|||++|+.+|..+. .|+..+... . .++|++||+||+|+.+.
T Consensus 85 -------------------------------~~ii~v~d~~d~~s~~~~~-~~~~~~~~~~~~~~~pillv~nK~Dl~~~ 132 (176)
T d1fzqa_ 85 -------------------------------DILIYVIDSADRKRFEETG-QELTELLEEEKLSCVPVLIFANKQDLLTA 132 (176)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred -------------------------------ceeEEeeccccccchhhhh-hhhhhhhhhhccCCCeEEEEEEecccccc
Confidence 9999999999999999997 555554433 2 46899999999999864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+..+. ........++..+ .++++|||++|+||+++|+|+++++
T Consensus 133 ~~~~~~---------~~~~~~~~~~~~~-~~~~~~SA~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 133 APASEI---------AEGLNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp CCHHHH---------HHHTTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccHHHH---------HHHHHHHHHHhcC-CEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 221110 0000011112233 5799999999999999999998864
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.91 E-value=9e-25 Score=169.44 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=109.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||+.+.+.. ..+|.+. .........+.+.+||++|+..++..+..++.++
T Consensus 22 ~vGKTSli~rl~~~~~~~-~~~t~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----------------- 80 (173)
T d1e0sa_ 22 AAGKTTILYKLKLGQSVT-TIPTVGF---NVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT----------------- 80 (173)
T ss_dssp TSSHHHHHHHTTCCCCEE-EEEETTE---EEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCC-ccceeee---eEEEeeccceeeEEecCCCcchhhhHHHhhhccc-----------------
Confidence 799999999999887642 2233222 2223344558899999999999998888888888
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++++|||+++.+++..+.+.|...+.+.. .+.|++||+||+|+.+..
T Consensus 81 -------------------------------~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~ 129 (173)
T d1e0sa_ 81 -------------------------------QGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 129 (173)
T ss_dssp -------------------------------CEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred -------------------------------ceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc
Confidence 999999999999999999844444444443 479999999999997642
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
...+ +....+...++..+ ..+++|||++|+||+++|+++...+
T Consensus 130 ~~~~---------i~~~~~~~~~~~~~-~~~~e~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 130 KPHE---------IQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp CHHH---------HHHHTTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred cHHH---------HHHHHHHHHHHhCC-CEEEEeeCCCCcCHHHHHHHHHHhc
Confidence 2111 11111222233335 4799999999999999999998865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.88 E-value=3e-23 Score=157.28 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=112.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|.++.+...+..+. ......+...+.+.+||++|...+...+..++..+
T Consensus 10 ~vGKSsLi~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------------- 68 (160)
T d1r8sa_ 10 AAGKTTILYKLKLGEIVTTIPTIG----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNT----------------- 68 (160)
T ss_dssp TSSHHHHHHHHHHHCSSCCCCCSS----CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCcccccee----eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccc-----------------
Confidence 799999999999998865444332 22334566778999999999998877777777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-C-CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-C-PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~-~~~piilv~nK~Dl~~~ 158 (228)
++++++||++++.++..+. .|...+... . ...|+++++||.|+.+.
T Consensus 69 -------------------------------~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~k~d~~~~ 116 (160)
T d1r8sa_ 69 -------------------------------QGLIFVVDSNDRERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNA 116 (160)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------eeEEEEEEecChHHHHHHH-HHHHHHHHhhcccCceEEEEeeccccccc
Confidence 9999999999999999998 555554433 2 46899999999998864
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.... .+.......+++..+ .+++++||++|+||+++|+++++++
T Consensus 117 ~~~~---------~i~~~~~~~~~~~~~-~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 117 MNAA---------EITDKLGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp CCHH---------HHHHHTTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccHH---------HHHHHHHHHHHhhCC-CEEEEeECCCCCCHHHHHHHHHhcC
Confidence 2211 122222333444456 5899999999999999999998864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=6.7e-22 Score=154.60 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=106.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||..+.++..+.++ ..++...+.+++||++|++.++.+++.+++.+
T Consensus 12 ~vGKTsl~~r~~~~~~~t~~~~~--------~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~----------------- 66 (195)
T d1svsa1 12 ESGKSTIVKQMKIIHEAGTGIVE--------THFTFKDLHFKMFDVGGQRSERKKWIHCFEGV----------------- 66 (195)
T ss_dssp TSSHHHHHHHHHHHHSCCCSEEE--------EEEEETTEEEEEEEECCSGGGGGGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhhCCCCCccEEE--------EEEEeeeeeeeeeccccccccccchhhcccCC-----------------
Confidence 79999999999988775443322 23444557899999999999999999999999
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHH----------HHHhhHHHHhhhC-CCCCEEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFEN----------VRAKWYPEVRHHC-PSTPIILV 149 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~----------~~~~~~~~l~~~~-~~~piilv 149 (228)
+++++|||+++.++|.. ....|...+.+.. ...|++++
T Consensus 67 -------------------------------~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv 115 (195)
T d1svsa1 67 -------------------------------TAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILF 115 (195)
T ss_dssp -------------------------------SEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEE
T ss_pred -------------------------------ceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEE
Confidence 99999999999887632 2214555555443 46899999
Q ss_pred EeCCCCCCchHHHHHHh---hccCccccHHHHHHHHH-Hh---------CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 150 GTKLDLRDDKETIEKLK---EKKLAPITYPQGLSMAK-EI---------GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 150 ~nK~Dl~~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+||+|+....-...... +.........++..+.. .+ ..+.++++||++|.||+++|+.+.+.|++
T Consensus 116 ~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~ 193 (195)
T d1svsa1 116 LNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193 (195)
T ss_dssp EECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence 99999754321000000 00001122222222111 11 12457899999999999999999888764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1e-20 Score=148.36 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=117.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||..+.| .+.||++..+. .++...+.+.+||++|++.++..+..++.++
T Consensus 12 ~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~----------------- 69 (200)
T d2bcjq2 12 ESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENV----------------- 69 (200)
T ss_dssp TSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSC-----------------
T ss_pred CCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeecccccccccccccccccccc-----------------
Confidence 7999999999999988 47899975443 4455668899999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhh-----------HHHHHHhhHHHHhhhC-CCCCEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPAS-----------FENVRAKWYPEVRHHC-PSTPIIL 148 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s-----------~~~~~~~~~~~l~~~~-~~~piil 148 (228)
++++++||.++..+ ++... .|...+.... .+.|+++
T Consensus 70 -------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~l~~~~~~~~~~~~ 117 (200)
T d2bcjq2 70 -------------------------------TSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVIL 117 (200)
T ss_dssp -------------------------------SEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHHCGGGSSSEEEE
T ss_pred -------------------------------ceeeEeeeccchhhhhhhhccccchHHHHH-HHHHHHhhhhccCccEEE
Confidence 99999999987643 44444 7877777654 5799999
Q ss_pred EEeCCCCCCchHH----HHHHhhccCccccHHHHHHHHHHh---------CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 149 VGTKLDLRDDKET----IEKLKEKKLAPITYPQGLSMAKEI---------GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 149 v~nK~Dl~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
++||+|+...... ............+...+..+...+ .-+.++++||++|.||+++|+.+.+.|++
T Consensus 118 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp EEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence 9999998654321 111111112223344444443321 11357899999999999999999888874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.82 E-value=4.5e-20 Score=140.36 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=109.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.|... .+|.+..+ .......+.+.+||.+|...........+...
T Consensus 15 ~vGKSSLi~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 73 (169)
T d1upta_ 15 GAGKTTILYRLQVGEVVTT-IPTIGFNV---ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNT----------------- 73 (169)
T ss_dssp TSSHHHHHHHHHHSSCCCC-CCCSSEEE---EEEEETTEEEEEEEECCCGGGGGGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhCCCCcce-ecccceee---eeeccCceEEEEeeccccccccccchhhhhhh-----------------
Confidence 7999999999999988643 33433222 12223346888999999988887777777776
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC-CCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC-PSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~ 159 (228)
+++++++|+++..++....+.+...+.... ...|+++|+||.|+.+..
T Consensus 74 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~ 122 (169)
T d1upta_ 74 -------------------------------DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122 (169)
T ss_dssp -------------------------------SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -------------------------------hhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc
Confidence 999999999999999888744444444332 468999999999998753
Q ss_pred HHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCC
Q psy8274 160 ETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 215 (228)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~ 215 (228)
...+ +....+..++...+ .+|+++||++|.||+++|+++++.+..+
T Consensus 123 ~~~~---------i~~~~~~~~~~~~~-~~~~~~SA~~g~gv~e~~~~l~~~l~~k 168 (169)
T d1upta_ 123 TSSE---------MANSLGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKSR 168 (169)
T ss_dssp CHHH---------HHHHHTGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred cHHH---------HHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2111 11122223333445 5899999999999999999999988653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=4.5e-20 Score=139.46 Aligned_cols=154 Identities=17% Similarity=0.244 Sum_probs=106.9
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+. .+.||.+.... ......+...+||+.|...+...+..++..+
T Consensus 10 nvGKSSLln~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 68 (166)
T d2qtvb1 10 NAGKTTLLHMLKNDRLA-TLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQARRLWKDYFPEV----------------- 68 (166)
T ss_dssp TSSHHHHHHHHHHSCCC-CCCCCCSCEEE---EECCTTCCEEEEECCCSGGGGGGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhCCCCC-eeeceeeEeEE---EeccCCeeEEEEeeccchhhhhhHhhhhhhe-----------------
Confidence 79999999999998875 45666543332 3344456788999999988888888888777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhC--CCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHC--PSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~ 158 (228)
++++++||.++..++.... .|........ .+.|+++++||.|+...
T Consensus 69 -------------------------------~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~i~~~k~d~~~~ 116 (166)
T d2qtvb1 69 -------------------------------NGIVFLVDAADPERFDEAR-VELDALFNIAELKDVPFVILGNKIDAPNA 116 (166)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHH-HHHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred -------------------------------eeeeeeccccchhhhhhhh-HHHHhhhhhhccCCceEEEEecccccccc
Confidence 9999999999999999888 4544444432 46899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHH
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIR 210 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~ 210 (228)
....+...... .....+...+....+ .++++|||++|+||+++|+++.+
T Consensus 117 ~~~~~i~~~~~--~~~~~~~~~~~~~~~-~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 117 VSEAELRSALG--LLNTTGSQRIEGQRP-VEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp CCHHHHHHHHT--CSSCCC---CCSSCC-EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred CCHHHHHHHhh--hhhhhHHHhhcccCC-CEEEEeeCCCCCCHHHHHHHHhC
Confidence 22111111110 011111111122223 47999999999999999999864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.81 E-value=2.3e-20 Score=143.96 Aligned_cols=150 Identities=19% Similarity=0.277 Sum_probs=100.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++|+.++.+... .++.+. ........ .+.+.+||++|.+.....+...+..+
T Consensus 25 ~~GKSsLi~rl~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~----------------- 83 (177)
T d1zj6a1 25 NAGKTTILYQFSMNEVVHT-SPTIGS-NVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNT----------------- 83 (177)
T ss_dssp TSSHHHHHHHHHTTSCEEE-ECCSCS-SCEEEEET--TEEEEEEECCC----CGGGHHHHTTC-----------------
T ss_pred CCCHHHHHHHHhcCCCCcc-ccccce-eEEEEeec--ceEEEEeccccccccccchhhhhccc-----------------
Confidence 7999999999999887532 222221 12233333 36889999999988887777777776
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh--CCCCCEEEEEeCCCCCCc
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH--CPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~ 158 (228)
+++++++|.+|..++.... .+....... ....|++||+||+|+...
T Consensus 84 -------------------------------~~~i~v~d~~d~~~~~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 131 (177)
T d1zj6a1 84 -------------------------------EFVIVVVDSTDRERISVTR-EELYKMLAHEDLRKAGLLIFANKQDVKEC 131 (177)
T ss_dssp -------------------------------CEEEEEEETTCTTTHHHHH-HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------------eeeeeecccccccchhhhh-hhhhhhhhcccccceEEEEEEEccccccc
Confidence 9999999999999998876 433333322 357899999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
....+ +........++..+ .+++++||++|+||+++|+++.+++.
T Consensus 132 ~~~~~---------i~~~~~~~~~~~~~-~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 132 MTVAE---------ISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp CCHHH---------HHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred CcHHH---------HHHHHHHHhhHhcC-CEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 22111 11111111112234 58999999999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=7.2e-20 Score=141.98 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=101.3
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++.... .....+............+ ..+.+|||+|...........+ .
T Consensus 15 ~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~-------~---------- 75 (178)
T d1wf3a1 15 NVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM-------D---------- 75 (178)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH-------H----------
T ss_pred CCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhc-------c----------
Confidence 79999999999987642 2233333333333344444 4678899999865432221111 0
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
...... ..++|++++|+|++++.+.... .|...++....+.|+++|+||+|+...
T Consensus 76 --------------~~~~~~---------~~~ad~il~v~D~~~~~~~~~~--~i~~~l~~~~~~~piilv~NK~Dl~~~ 130 (178)
T d1wf3a1 76 --------------QEVYEA---------LADVNAVVWVVDLRHPPTPEDE--LVARALKPLVGKVPILLVGNKLDAAKY 130 (178)
T ss_dssp --------------HHHHHH---------TSSCSEEEEEEETTSCCCHHHH--HHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred --------------cccccc---------cccccceeeeechhhhhccccc--chhhheeccccchhhhhhhcccccccC
Confidence 000000 0223999999999887665442 567777776678999999999999764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
.+ +....+.+.++...++++||++|.|++++++++++.+.
T Consensus 131 ~~---------------~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 131 PE---------------EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp HH---------------HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred HH---------------HHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 21 22334445556668999999999999999999988764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=6.1e-19 Score=136.80 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=60.4
Q ss_pred ceEEEEEecCChh--hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCce
Q psy8274 112 DVFQICFSLVNPA--SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~--s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (228)
+++++++|+.... ++.... .|+........+.|+++|+||+|+..... ..+........+ .+
T Consensus 81 ~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--------------~~~~~~~~~~~~-~~ 144 (180)
T d1udxa2 81 RVLLYVLDAADEPLKTLETLR-KEVGAYDPALLRRPSLVALNKVDLLEEEA--------------VKALADALAREG-LA 144 (180)
T ss_dssp SEEEEEEETTSCHHHHHHHHH-HHHHHHCHHHHHSCEEEEEECCTTSCHHH--------------HHHHHHHHHTTT-SC
T ss_pred hhhhhhcccccccccchhhhh-hhhhccccccchhhhhhhhhhhhhhhHHH--------------HHHHHHHHHhcC-Ce
Confidence 9999999986532 232222 33333222223589999999999987532 122334444456 58
Q ss_pred EEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
++++||++|.||+++++.+.+.+....
T Consensus 145 ~~~iSA~tg~gid~L~~~i~~~l~~~~ 171 (180)
T d1udxa2 145 VLPVSALTGAGLPALKEALHALVRSTP 171 (180)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999988776543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=1.3e-19 Score=142.34 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=102.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||. |...+.||+|.... .++.+.+.+.+||++|++.++..+..+++++
T Consensus 12 ~vGKTsll~r~~---f~~~~~pTiG~~~~---~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~----------------- 68 (200)
T d1zcba2 12 ESGKSTFLKQMR---IIHGQDPTKGIHEY---DFEIKNVPFKMVDVGGQRSERKRWFECFDSV----------------- 68 (200)
T ss_dssp TSSHHHHHHHHH---HHHSCCCCSSEEEE---EEEETTEEEEEEEECC-------CTTSCTTC-----------------
T ss_pred CCCHHHHHHHHh---cCCCCCCeeeeEEE---EEeeeeeeeeeecccceeeeccccccccccc-----------------
Confidence 799999999993 56678899875332 3444557899999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH----------HHHHHhhHHHH-hhh-CCCCCEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF----------ENVRAKWYPEV-RHH-CPSTPIIL 148 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~----------~~~~~~~~~~l-~~~-~~~~piil 148 (228)
++++++||.++..++ .... .++..+ .+. ..++|++|
T Consensus 69 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~piil 116 (200)
T d1zcba2 69 -------------------------------TSILFLVSSSEFDQVLMEDRQTNRLTESL-NIFETIVNNRVFSNVSIIL 116 (200)
T ss_dssp -------------------------------CEEEEEEETTCTTCEETTEEEEEHHHHHH-HHHHHHHTCGGGTTSEEEE
T ss_pred -------------------------------ceeEEEEEcCCcceeeeecccchhhhHHH-HHHHHHhhChhhcCceEEE
Confidence 999999999986543 3333 333333 332 25799999
Q ss_pred EEeCCCCCCchHHHH----HHhhccCccccHHHHHHHHHHh----------CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 149 VGTKLDLRDDKETIE----KLKEKKLAPITYPQGLSMAKEI----------GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 149 v~nK~Dl~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
++||+|+........ .+.......-+.+.+..+.... .-+.++++||+++.||+++|+.+.+.|++
T Consensus 117 v~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 117 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 999999865321000 0001111223334444444331 11346789999999999999999887764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.76 E-value=2e-18 Score=133.01 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=99.3
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+++|+++.+... .++.+... ..+..++ ..+..||+.++..+...+...+...
T Consensus 23 ~vGKTsLl~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 81 (186)
T d1f6ba_ 23 NAGKTTLLHMLKDDRLGQH-VPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI----------------- 81 (186)
T ss_dssp TSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGC-----------------
T ss_pred CCCHHHHHHHHhCCCCcce-ecccccce-eEEEecc--cccccccccchhhhhhHHhhhhccc-----------------
Confidence 7999999999999887543 34433322 2344455 4677899999988888888777777
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhh-CCCCCEEEEEeCCCCCCch
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHH-CPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~ 159 (228)
+++++++|+++...+......+....... ..+.|+++++||.|+....
T Consensus 82 -------------------------------~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~ 130 (186)
T d1f6ba_ 82 -------------------------------NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 130 (186)
T ss_dssp -------------------------------SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred -------------------------------ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC
Confidence 99999999999999988874444333333 2579999999999987542
Q ss_pred HHH---HHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 160 ETI---EKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 160 ~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
... +......................+ .++++|||++|+||+++|+|+++++
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 131 SEERLREMFGLYGQTTGKGSVSLKELNARP-LEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCC-EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CHHHHHHHHhhcccchhhhhhhHHHhhcCC-CEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 211 111111111111110111111223 4799999999999999999998764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.6e-19 Score=135.27 Aligned_cols=149 Identities=17% Similarity=0.241 Sum_probs=98.5
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|+|++.... ..+..+..+.....+...+ ..+.+||++|........... .+.....+.
T Consensus 11 nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~~---- 78 (161)
T d2gj8a1 11 NAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERI------GIERAWQEI---- 78 (161)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHH------HHHHHHHHH----
T ss_pred CCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhH------HHHHHHHHH----
Confidence 79999999999977643 2222233333334445555 467789999976532211100 000000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
..+|++++++|.++..++.... .|...+.......|++||+||+|+...
T Consensus 79 ------------------------------~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 79 ------------------------------EQADRVLFMVDGTTTDAVDPAE-IWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp ------------------------------HTCSEEEEEEETTTCCCCSHHH-HCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred ------------------------------Hhccccceeeccccccchhhhh-hhhhhhhhcccccceeeccchhhhhhh
Confidence 0129999999999999988876 777777766678999999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.. ... +.+..+++++||++|.||+++++++.+.+
T Consensus 128 ~~-----------~~~---------~~~~~~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 128 TL-----------GMS---------EVNGHALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp CC-----------EEE---------EETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred HH-----------HHH---------HhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence 21 111 12226899999999999999999998863
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=1.8e-17 Score=127.36 Aligned_cols=156 Identities=16% Similarity=0.077 Sum_probs=92.2
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+++|++.... ..+..+........+ +.....+.+||++|...........+ .+.
T Consensus 10 n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~-----~~~---------- 72 (171)
T d1mkya1 10 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV--EWYGKTFKLVDTCGVFDNPQDIISQK-----MKE---------- 72 (171)
T ss_dssp TSSHHHHHHHHHC--------------CCSEEEE--EETTEEEEEEECTTTTSSGGGCCCHH-----HHH----------
T ss_pred CCCHHHHHHHHhCCCcceecccCceeeccccccc--cccccccccccccceeeeeccccccc-----ccc----------
Confidence 79999999999976542 223333332223333 33345688899999644332111100 000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
.....+ ..+|+++++.|.++....... .++..+... ++|+++|+||+|+.+.
T Consensus 73 ---------------~~~~~~---------~~ad~i~~~~~~~~~~~~~~~--~~~~~l~~~--~~pviiv~NK~Dl~~~ 124 (171)
T d1mkya1 73 ---------------VTLNMI---------READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE 124 (171)
T ss_dssp ---------------HHHHHH---------TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH
T ss_pred ---------------cccccc---------ccCcEEEEeeccccccccccc--ccccccccc--cccccccchhhhhhhh
Confidence 000000 122899999998776666543 566777766 6899999999999754
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhcCCC
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPV 216 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~~~~ 216 (228)
.. .+....+. ..+...++++||++|.|++++++++++.+.+..
T Consensus 125 ~~--------------~~~~~~~~-~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 125 FE--------------REVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG 167 (171)
T ss_dssp HH--------------HHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred hh--------------hHHHHHHH-hcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 21 11112222 234457899999999999999999999876543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=7.8e-16 Score=119.28 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=91.3
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|++++... ...+..+........+..++. .+.++|++|.......+......... .....++
T Consensus 18 ~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~--~~~~~~~---- 89 (186)
T d1mkya2 18 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSN--YRVVDSI---- 89 (186)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCC--HHHHHHH----
T ss_pred CCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchh--HHHHHHH----
Confidence 7999999999997653 233334444444445666664 56788999986654444333221100 0000000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
+ .+|++++|+|+..+..-... .+...+... +.|+|+|+||+|+...
T Consensus 90 -----------------~-------------~~dvii~v~d~~~~~~~~~~--~~~~~~~~~--~~~~i~v~nK~D~~~~ 135 (186)
T d1mkya2 90 -----------------E-------------KADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVH 135 (186)
T ss_dssp -----------------H-------------HCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTT
T ss_pred -----------------h-------------cCCEEEEeecccccchhhHH--HHHHHHHHc--CCceeeeccchhhhcc
Confidence 0 12999999999876554332 455555554 6899999999998764
Q ss_pred hHHHHHHhhccCccccHHHHHHHHHH----hCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 159 KETIEKLKEKKLAPITYPQGLSMAKE----IGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
.+ ....+.....+. .+..+++++||++|.||++|++.+.+.+
T Consensus 136 ~~------------~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 136 RE------------KRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp GG------------GCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hh------------hhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 122222222222 3446899999999999999999997654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.5e-16 Score=124.44 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccc-cCCCCccccccchhHHhhcchhhhhc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD-RLRPLSYPQTGLSMAKEIGAVKYLEC 79 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
|||||||+++|+++.+... .+|++..+......++..+.+.+||++|++.++ ..+..++..+
T Consensus 10 ~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~---------------- 72 (207)
T d2fh5b1 10 DSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA---------------- 72 (207)
T ss_dssp TSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE----------------
T ss_pred CCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhc----------------
Confidence 7999999999999988654 355544443222224556789999999998765 3445555555
Q ss_pred cccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhH-HHHHHhhHHHHhhh---CCCCCEEEEEeCCCC
Q psy8274 80 SALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASF-ENVRAKWYPEVRHH---CPSTPIILVGTKLDL 155 (228)
Q Consensus 80 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~-~~~~~~~~~~l~~~---~~~~piilv~nK~Dl 155 (228)
+++++|||++|..++ ....+.+...+... ...+|++||+||+|+
T Consensus 73 --------------------------------~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl 120 (207)
T d2fh5b1 73 --------------------------------RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120 (207)
T ss_dssp --------------------------------EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred --------------------------------cccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECccc
Confidence 999999999997764 44442333333322 346899999999999
Q ss_pred CCc
Q psy8274 156 RDD 158 (228)
Q Consensus 156 ~~~ 158 (228)
...
T Consensus 121 ~~a 123 (207)
T d2fh5b1 121 AMA 123 (207)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=5.3e-16 Score=117.30 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=89.0
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCccccc-CCCCccccccchhHHhhcchhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDR-LRPLSYPQTGLSMAKEIGAVKYL 77 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (228)
|||||||+|+|++.... ..+..+........+..++ ..+.+||++|...... .....
T Consensus 10 n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~------------------ 69 (160)
T d1xzpa2 10 NVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERL------------------ 69 (160)
T ss_dssp HHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCC------------------
T ss_pred CCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHH------------------
Confidence 68999999999976532 2222232333344445555 5678899999543211 11000
Q ss_pred hccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCC
Q psy8274 78 ECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRD 157 (228)
Q Consensus 78 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 157 (228)
+++....... ++|++++|+|++++.+..... +... ....|+++++||.|+.+
T Consensus 70 --------~~~~~~~~~~--------------~ad~ii~v~d~~~~~~~~~~~--~~~~----~~~~~~i~~~~k~d~~~ 121 (160)
T d1xzpa2 70 --------GIERTLQEIE--------------KADIVLFVLDASSPLDEEDRK--ILER----IKNKRYLVVINKVDVVE 121 (160)
T ss_dssp --------CHHHHHHHHH--------------HCSEEEEEEETTSCCCHHHHH--HHHH----HTTSSEEEEEEECSSCC
T ss_pred --------HHHHHHHHHH--------------hCCEEEEEEeCCCCcchhhhh--hhhh----cccccceeeeeeccccc
Confidence 0011111111 119999999999987766542 2222 23578999999999987
Q ss_pred chHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 158 DKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
. ...++..... ..+ .+++++||++|.||++|++.+.++
T Consensus 122 ~--------------~~~~~~~~~~-~~~-~~~~~vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 122 K--------------INEEEIKNKL-GTD-RHMVKISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp C--------------CCHHHHHHHH-TCS-TTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred h--------------hhhHHHHHHh-CCC-CcEEEEECCCCCCHHHHHHHHHhc
Confidence 4 2222222111 123 579999999999999999998764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=6.6e-17 Score=129.69 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=105.8
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||++||..+.+ .||+|... ..+.+++ +.+++||++|++.++..|..++.++
T Consensus 16 ~vGKTsll~~~~~~~~----~pTiG~~~-~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~----------------- 71 (221)
T d1azta2 16 ESGKSTIVKQMRILHV----VLTSGIFE-TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDV----------------- 71 (221)
T ss_dssp TSSHHHHHHHHHHHHC----CCCCSCEE-EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTC-----------------
T ss_pred CCCHHHHHHHHhcCCc----CCCCCeEE-EEEEECc--EEEEEEecCccceeccchhhhcccc-----------------
Confidence 7999999999987654 57776332 2344444 7889999999999999999999998
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh----------hHHHHHHhhHHHHhhhC-CCCCEEEE
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA----------SFENVRAKWYPEVRHHC-PSTPIILV 149 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~----------s~~~~~~~~~~~l~~~~-~~~piilv 149 (228)
+++++++|.++.. .+.+..+.|...+.+.. .++|++|+
T Consensus 72 -------------------------------~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~ 120 (221)
T d1azta2 72 -------------------------------TAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120 (221)
T ss_dssp -------------------------------SEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEE
T ss_pred -------------------------------cceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEE
Confidence 9999999998643 23333324444444433 57999999
Q ss_pred EeCCCCCCchHHH-----HHH-hhcc------------CccccHHHHHHHHHH-----h-------CCceEEEecccCCC
Q psy8274 150 GTKLDLRDDKETI-----EKL-KEKK------------LAPITYPQGLSMAKE-----I-------GAVKYLECSALTQK 199 (228)
Q Consensus 150 ~nK~Dl~~~~~~~-----~~~-~~~~------------~~~v~~~~~~~~~~~-----~-------~~~~~~evSa~~~~ 199 (228)
+||+|+.+..-.. +.. .... .......++..+.+. . ..+.++++||.+..
T Consensus 121 ~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ 200 (221)
T d1azta2 121 LNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 200 (221)
T ss_dssp EECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHH
T ss_pred echhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccH
Confidence 9999997653211 110 0000 001122334333321 1 11345789999999
Q ss_pred CHHHHHHHHHHHhcC
Q psy8274 200 GLKTVFDEAIRAVLC 214 (228)
Q Consensus 200 ~v~~lf~~l~~~i~~ 214 (228)
||+.+|..+.+.|++
T Consensus 201 ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 201 NIRRVFNDCRDIIQR 215 (221)
T ss_dssp HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988777764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.62 E-value=2.8e-16 Score=121.79 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=59.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHH---hCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKE---IGAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~ 188 (228)
|++++|+|+++...-... .....+... ++|+++|.||+|+........ ..+....+.+. ....
T Consensus 84 d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 149 (179)
T d1wb1a4 84 DLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEEIKR----------TEMIMKSILQSTHNLKNS 149 (179)
T ss_dssp CEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHHHHH----------HHHHHHHHHHHSSSGGGC
T ss_pred cccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHHHHH----------HHHHHHHHHHHhhcCCCC
Confidence 999999999986544332 233344443 689999999999987542111 01111122222 1225
Q ss_pred eEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+++++||++|.|++++++.+.+.+.+
T Consensus 150 ~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 150 SIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 79999999999999999999987754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=2.8e-15 Score=115.66 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=54.9
Q ss_pred ceEEEEEecCChhhHHHHHH---------hhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRA---------KWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMA 182 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~---------~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 182 (228)
|++++|+|.+.+........ .++..+... +.|+++|+||+|+....+... ..+.
T Consensus 83 d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~~~~---------------~~~~ 145 (184)
T d2cxxa1 83 DVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQEVI---------------NFLA 145 (184)
T ss_dssp CEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHHHHH---------------HHHH
T ss_pred chheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHHHHH---------------HHHH
Confidence 99999999876543322210 223333333 689999999999876432111 1111
Q ss_pred HHhC------CceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 183 KEIG------AVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 183 ~~~~------~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++ ...++++||++|.|++++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 146 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 1111 034889999999999999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.58 E-value=4.9e-15 Score=119.07 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=91.2
Q ss_pred CCChhhhHHhhhhCCCCCCCCceee-------ec----------cceeEEEcCeEEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVF-------DN----------YSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~-------~~----------~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|+|||||+++++...........+. .. ......++.....+.++||||+..|..........+
T Consensus 15 d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~~ 94 (227)
T d1g7sa4 15 DHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALA 94 (227)
T ss_dssp TSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSC
T ss_pred CccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccchhccccc
Confidence 6899999999986432111111110 00 001111223335678899999998876655555555
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChhhHHHHHHhhHHHHhhhCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPASFENVRAKWYPEVRHHCPS 143 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~ 143 (228)
|++|+|+|+.+.-.-... ..+..+... +
T Consensus 95 ------------------------------------------------D~~ilVvda~~g~~~~~~--~~~~~~~~~--~ 122 (227)
T d1g7sa4 95 ------------------------------------------------DLAILIVDINEGFKPQTQ--EALNILRMY--R 122 (227)
T ss_dssp ------------------------------------------------SEEEEEEETTTCCCHHHH--HHHHHHHHT--T
T ss_pred ------------------------------------------------ceEEEEEecccCcccchh--HHHHHhhcC--C
Confidence 999999999875444332 444455554 6
Q ss_pred CCEEEEEeCCCCCCchHH-----HHHHhhccCccc---cHHHHH----HHHHH-------------hCCceEEEecccCC
Q psy8274 144 TPIILVGTKLDLRDDKET-----IEKLKEKKLAPI---TYPQGL----SMAKE-------------IGAVKYLECSALTQ 198 (228)
Q Consensus 144 ~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~v---~~~~~~----~~~~~-------------~~~~~~~evSa~~~ 198 (228)
.|+|+|.||+|+...... ......+....+ ...... .+... .+..+++++||++|
T Consensus 123 ~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G 202 (227)
T d1g7sa4 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (227)
T ss_dssp CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred CeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCC
Confidence 899999999998754210 000000000000 000011 11111 12247899999999
Q ss_pred CCHHHHHHHHHHHh
Q psy8274 199 KGLKTVFDEAIRAV 212 (228)
Q Consensus 199 ~~v~~lf~~l~~~i 212 (228)
.|+++|++.+....
T Consensus 203 ~gid~Ll~~l~~l~ 216 (227)
T d1g7sa4 203 EGIPELLTMLMGLA 216 (227)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.57 E-value=6.5e-15 Score=115.05 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=59.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh---CCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI---GAV 188 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~ 188 (228)
++++++.|++++..-... ++++.+.+. ++|+++|+||+|+....... +....+.+.+ ...
T Consensus 107 ~~vi~viD~~~~~~~~~~--~~~~~l~~~--~~piivv~NK~D~~~~~~~~-------------~~~~~~~~~l~~~~~~ 169 (195)
T d1svia_ 107 KAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGKWD-------------KHAKVVRQTLNIDPED 169 (195)
T ss_dssp EEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGHH-------------HHHHHHHHHHTCCTTS
T ss_pred hhhhhhhhcccccccccc--ccccccccc--cCcceechhhccccCHHHHH-------------HHHHHHHHHhcccCCC
Confidence 899999999876543333 566667665 68999999999987643211 1122222222 225
Q ss_pred eEEEecccCCCCHHHHHHHHHHHh
Q psy8274 189 KYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 189 ~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
+++++||++|.|++++++++.+.+
T Consensus 170 ~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998865
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.56 E-value=3.3e-15 Score=115.77 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=54.4
Q ss_pred ceEEEEEecCChhhHHHHHH--hhHHHHhhh---CCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-
Q psy8274 112 DVFQICFSLVNPASFENVRA--KWYPEVRHH---CPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI- 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~--~~~~~l~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 185 (228)
+.++++.+............ .+....... ..++|+++|+||+|+.+... ....+.+.+
T Consensus 81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----------------~~~~~~~~~~ 144 (185)
T d1lnza2 81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----------------NLEAFKEKLT 144 (185)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----------------HHHHHHHHCC
T ss_pred hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----------------HHHHHHHHhc
Confidence 77777777654443222210 111111111 23589999999999987532 122233333
Q ss_pred -CCceEEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 186 -GAVKYLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 186 -~~~~~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
+ .+++++||++|.|++++++.+++.+..
T Consensus 145 ~~-~~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 145 DD-YPVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp SC-CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred cC-CcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4 578999999999999999999998743
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=6.4e-14 Score=107.38 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
++++++.|..+...... .+...+.+ ...|+++|.||.|...... ........+...++..+++
T Consensus 87 ~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~~~------------~~~~~~~~~~~~~~~~~~~ 149 (179)
T d1egaa1 87 ELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQEKA------------DLLPHLQFLASQMNFLDIV 149 (179)
T ss_dssp EEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCCHH------------HHHHHHHHHHTTSCCSEEE
T ss_pred ceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccchhh------------hhhhHhhhhhhhcCCCCEE
Confidence 88888888765333222 23333333 3578899999999887543 1223345555566767899
Q ss_pred EecccCCCCHHHHHHHHHHHhc
Q psy8274 192 ECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i~ 213 (228)
++||++|.|+++|++.+.+.+.
T Consensus 150 ~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 150 PISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEeCcCCCCHHHHHHHHHHhCC
Confidence 9999999999999999988764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.49 E-value=1.7e-14 Score=112.99 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=57.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~ 189 (228)
|++++|.|+.+...-.... +.+..+... ...+++++.||+|+.+.....+ .......+.... +..+
T Consensus 103 d~~ilvvda~~g~~~~~t~-e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~----------~~~~~~~~~~~~~~~~~~ 170 (195)
T d1kk1a3 103 DGAILVIAANEPCPRPQTR-EHLMALQII-GQKNIIIAQNKIELVDKEKALE----------NYRQIKEFIEGTVAENAP 170 (195)
T ss_dssp SEEEEEEETTSCSSCHHHH-HHHHHHHHH-TCCCEEEEEECGGGSCHHHHHH----------HHHHHHHHHTTSTTTTCC
T ss_pred cccccccchhhhhhhhhhH-HHHHHHHHh-cCccceeeeecccchhhHHHHH----------HHHHHHHHhccccCCCCe
Confidence 9999999998764222222 223333333 2345788899999987543211 112233333332 2257
Q ss_pred EEEecccCCCCHHHHHHHHHHHh
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i 212 (228)
++++||++|.|+++|++.+.+.+
T Consensus 171 iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 171 IIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
Confidence 99999999999999999988765
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.45 E-value=8e-14 Score=110.06 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=57.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh--CCce
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI--GAVK 189 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~ 189 (228)
|++|+|.|+.+.-.-.... +.+..+... .-.|+||+.||+|+.+.....+. ..+...+.... +-.+
T Consensus 111 d~ailvVda~~gi~~~~t~-e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~~~~----------~~~~~~~l~~~~~~~~p 178 (205)
T d2qn6a3 111 DGAILVVAANEPFPQPQTR-EHFVALGII-GVKNLIIVQNKVDVVSKEEALSQ----------YRQIKQFTKGTWAENVP 178 (205)
T ss_dssp SEEEEEEETTSCSSCHHHH-HHHHHHHHT-TCCCEEEEEECGGGSCHHHHHHH----------HHHHHHHHTTSTTTTCC
T ss_pred ccccccccccccccchhHH-HHHHHHHHc-CCceeeeccccCCCccchHHHHH----------HHHHHHHhccccCCCCe
Confidence 9999999998753111111 222233332 23588999999999876432111 11222222222 1257
Q ss_pred EEEecccCCCCHHHHHHHHHHHhcC
Q psy8274 190 YLECSALTQKGLKTVFDEAIRAVLC 214 (228)
Q Consensus 190 ~~evSa~~~~~v~~lf~~l~~~i~~ 214 (228)
++++||++|.||+++++.+...+..
T Consensus 179 ~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 179 IIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCCChHHHHHHHHhhCCC
Confidence 9999999999999999998887654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.39 E-value=4.1e-13 Score=105.38 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=58.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA---- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 187 (228)
|++++|.|+.+.-.=+.. +.+..+... ...|+|++.||+|+.......+. -..+...+...++.
T Consensus 91 D~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~~---------i~~~i~~~l~~~~~~~~~ 158 (196)
T d1d2ea3 91 DGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSEMVEL---------VELEIRELLTEFGYKGEE 158 (196)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHHHHHH---------HHHHHHHHHHHTTSCTTT
T ss_pred CeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHHHHHH---------HHHHHHHHHHHhCCCccc
Confidence 999999999875432222 222233332 24678999999999864332221 11234455555554
Q ss_pred ceEEEecccCC----------CCHHHHHHHHHHHhc
Q psy8274 188 VKYLECSALTQ----------KGLKTVFDEAIRAVL 213 (228)
Q Consensus 188 ~~~~evSa~~~----------~~v~~lf~~l~~~i~ 213 (228)
.+++++||++| .++.+|++.+.+.+.
T Consensus 159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 57999999998 588999888777654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.2e-11 Score=94.49 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=53.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-CCceE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI-GAVKY 190 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~ 190 (228)
+.++.+.|.......... .++..+... ..|+++++||+|+.+.....+. .++.......+ +..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~----------~~~~~~~l~~~~~~~~~ 165 (188)
T d1puia_ 100 QGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGARKAQ----------LNMVREAVLAFNGDVQV 165 (188)
T ss_dssp EEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHHHHHH----------HHHHHHHHGGGCSCEEE
T ss_pred eEEEEeecccccchhHHH--HHHHHhhhc--cccccchhhhhhccCHHHHHHH----------HHHHHHHHHhhCCCCcE
Confidence 555666666554444333 444454444 6789999999999875432111 11122222222 34678
Q ss_pred EEecccCCCCHHHHHHHHHHH
Q psy8274 191 LECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 191 ~evSa~~~~~v~~lf~~l~~~ 211 (228)
+++||++|.||++|++.+.+-
T Consensus 166 i~vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 166 ETFSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp EECBTTTTBSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999987653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=3.2e-12 Score=99.93 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCChhhhHHhhhhCCCCCCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhhcc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLECS 80 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (228)
|||||||+|+|+++.+. +++... .....++.....+.+||++|++.+...+..++..+ +
T Consensus 13 n~GKTSLln~l~~~~~~----~~tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~----------~------ 71 (209)
T d1nrjb_ 13 NSGKTSLLTLLTTDSVR----PTVVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTR----------A------ 71 (209)
T ss_dssp TSSHHHHHHHHHHSSCC----CBCCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHH----------G------
T ss_pred CCCHHHHHHHHhCCCCC----CeEEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHH----------h------
Confidence 79999999999998764 222211 11222334446788999999987654332222111 0
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC-ChhhHHHHHHhhHHH----HhhhC-CCCCEEEEEeCCC
Q psy8274 81 ALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV-NPASFENVRAKWYPE----VRHHC-PSTPIILVGTKLD 154 (228)
Q Consensus 81 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt-~~~s~~~~~~~~~~~----l~~~~-~~~piilv~nK~D 154 (228)
..++.+++++|+. +..++.... .|+.. +.... .++|+++|+||+|
T Consensus 72 ----------------------------~~~~~~i~~vd~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~piiiv~NK~D 122 (209)
T d1nrjb_ 72 ----------------------------KFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSE 122 (209)
T ss_dssp ----------------------------GGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTT
T ss_pred ----------------------------hhccccceEEEEecccccHHHHH-HHHHHHHHHHHHHHhccCCeEEEEEeec
Confidence 1117888888865 566666665 44433 23333 4799999999999
Q ss_pred CCCc
Q psy8274 155 LRDD 158 (228)
Q Consensus 155 l~~~ 158 (228)
+...
T Consensus 123 ~~~~ 126 (209)
T d1nrjb_ 123 LFTA 126 (209)
T ss_dssp STTC
T ss_pred cccc
Confidence 9764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=1.9e-11 Score=96.21 Aligned_cols=74 Identities=19% Similarity=0.177 Sum_probs=44.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhC----
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIG---- 186 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 186 (228)
|++|+|.|+++.-.-+.. +.+..+... ++| ++++.||+|+.+..+..+. -..+...+...++
T Consensus 92 D~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~~~~~---------~~~~i~~~l~~~~~~~~ 158 (204)
T d2c78a3 92 DGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPELLDL---------VEMEVRDLLNQYEFPGD 158 (204)
T ss_dssp SSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHH---------HHHHHHHHHHHTTSCTT
T ss_pred CEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHHHHHH---------HHHHHHHHHHhcCCCcc
Confidence 999999999887665544 333344444 555 7778999999764332211 1123334444433
Q ss_pred CceEEEecccCC
Q psy8274 187 AVKYLECSALTQ 198 (228)
Q Consensus 187 ~~~~~evSa~~~ 198 (228)
..+++..|+..+
T Consensus 159 ~i~~i~~sa~~~ 170 (204)
T d2c78a3 159 EVPVIRGSALLA 170 (204)
T ss_dssp TSCEEECCHHHH
T ss_pred cceeeeeechhh
Confidence 256888888643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.17 E-value=7.8e-11 Score=93.86 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC---
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA--- 187 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 187 (228)
|++++|.|+.+...=+.. +.+..+... ++| +|++.||+|+.+..+..- .....+...+.+..++
T Consensus 114 D~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 181 (222)
T d1zunb3 114 DLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDERVF--------ESIKADYLKFAEGIAFKPT 181 (222)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH--------HHHHHHHHHHHHTTTCCCS
T ss_pred ceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccceeh--------hhhHHHHhhhhHhhccCCC
Confidence 999999999864333222 122222222 454 788889999986432111 1122344556666543
Q ss_pred -ceEEEecccCCCCHH
Q psy8274 188 -VKYLECSALTQKGLK 202 (228)
Q Consensus 188 -~~~~evSa~~~~~v~ 202 (228)
++|+++||++|.||.
T Consensus 182 ~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 182 TMAFVPMSALKGDNVV 197 (222)
T ss_dssp EEEEEECCTTTCTTTS
T ss_pred ceEEEEEEcccCccCC
Confidence 468999999999983
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.05 E-value=1.2e-09 Score=89.43 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=32.0
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCc
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDD 158 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 158 (228)
|++|+|.|..+.-.-.-. ........+ +.|.+++.||+|....
T Consensus 96 D~avlVvda~~Gv~~~T~--~~w~~a~~~--~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 96 DGAIVVFDSSQGVEPQSE--TVWRQAEKY--KVPRIAFANKMDKTGA 138 (276)
T ss_dssp CEEEEEEETTTSSCHHHH--HHHHHHHTT--TCCEEEEEECTTSTTC
T ss_pred hheEEeccccCCcchhHH--HHHHHHHHc--CCCEEEEEeccccccc
Confidence 999999999875544433 334455555 7999999999998763
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.00 E-value=2.3e-09 Score=87.39 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=30.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|.|..+.-.-.-. .......++ ++|.+++.||+|..
T Consensus 92 D~avlvvda~~Gv~~~t~--~~~~~~~~~--~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 92 DAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG 132 (267)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred CceEEEeeccCCccchhH--HHHHhhhhc--cccccccccccccc
Confidence 999999999876555444 333444545 69999999999975
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.93 E-value=2e-09 Score=86.70 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=45.3
Q ss_pred ceEEEEEecCCh----------hhHHHHHHhhHHHHhhhCCCC-CEEEEEeCCCCCCch---HHHHHHhhccCccccHHH
Q psy8274 112 DVFQICFSLVNP----------ASFENVRAKWYPEVRHHCPST-PIILVGTKLDLRDDK---ETIEKLKEKKLAPITYPQ 177 (228)
Q Consensus 112 d~vi~v~Dvt~~----------~s~~~~~~~~~~~l~~~~~~~-piilv~nK~Dl~~~~---~~~~~~~~~~~~~v~~~~ 177 (228)
|++++|.|+.+. .+.+.+ ..+... ++ +++++.||+|+.... ...++. .++
T Consensus 127 D~ailVVda~~G~~~~~~~~~~QT~e~l-----~l~~~~--~i~~iiv~iNKmD~~~~~~~e~~~~ei---------~~~ 190 (245)
T d1r5ba3 127 DIGVLVISARRGEFEAGFERGGQTREHA-----VLARTQ--GINHLVVVINKMDEPSVQWSEERYKEC---------VDK 190 (245)
T ss_dssp SEEEEEEECSTTHHHHTTSTTCCHHHHH-----HHHHHT--TCSSEEEEEECTTSTTCSSCHHHHHHH---------HHH
T ss_pred cceeeEEEcCCCccCCccccccchHHHH-----HHHHHc--CCCeEEEEEEcCCCCccchhHHHHHHH---------HHH
Confidence 999999999864 222222 122222 34 478889999997432 111110 112
Q ss_pred HHHHHHHh-CC-----ceEEEecccCCCCHHHHHH
Q psy8274 178 GLSMAKEI-GA-----VKYLECSALTQKGLKTVFD 206 (228)
Q Consensus 178 ~~~~~~~~-~~-----~~~~evSa~~~~~v~~lf~ 206 (228)
...+.+.. ++ ++++++||++|+||.++++
T Consensus 191 l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 191 LSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp HHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 22222222 21 5799999999999976543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.88 E-value=1e-09 Score=87.20 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=46.1
Q ss_pred ceEEEEEecCChhhH-----H-HHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh
Q psy8274 112 DVFQICFSLVNPASF-----E-NVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI 185 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~-----~-~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 185 (228)
|++++|.|+.+...- . ... +.+ .+.......++|++.||+|+.......+..+ .-..+...+...+
T Consensus 106 D~allVVda~~G~~~~t~~~~~qt~-e~l-~~~~~~~~~~iIv~iNK~D~~~~~~~~~~~~------~v~~~i~~~~~~~ 177 (224)
T d1jnya3 106 DAAILVVSAKKGEYEAGMSVEGQTR-EHI-ILAKTMGLDQLIVAVNKMDLTEPPYDEKRYK------EIVDQVSKFMRSY 177 (224)
T ss_dssp SEEEEEEECSTTHHHHHHSTTCHHH-HHH-HHHHHTTCTTCEEEEECGGGSSSTTCHHHHH------HHHHHHHHHHHHT
T ss_pred ceEEEEEecccCcccccccccchhH-HHH-HHHHHhCCCceEEEEEcccCCCccccHHHHH------HHHHHHHhHHHhc
Confidence 999999999874211 0 011 111 1111223356888999999975322111100 1112344444444
Q ss_pred CC----ceEEEecccCCCCHHH
Q psy8274 186 GA----VKYLECSALTQKGLKT 203 (228)
Q Consensus 186 ~~----~~~~evSa~~~~~v~~ 203 (228)
+. .+++++||..|.||.+
T Consensus 178 ~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 178 GFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCCCTTCEEEECBTTTTBTTTB
T ss_pred CCCcccCeEEEEEccCCCCccc
Confidence 32 4688999999999854
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=1.3e-09 Score=87.46 Aligned_cols=77 Identities=13% Similarity=0.028 Sum_probs=46.6
Q ss_pred ceEEEEEecCChh----------hHHHHHHhhHHHHhhhCCCCC-EEEEEeCCCCCCchHHHHHHhhccCccccHHHHHH
Q psy8274 112 DVFQICFSLVNPA----------SFENVRAKWYPEVRHHCPSTP-IILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLS 180 (228)
Q Consensus 112 d~vi~v~Dvt~~~----------s~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 180 (228)
|++|+|.|++... +-. +| ...... .+| +|++.||+|+.+.....- .....+...
T Consensus 109 D~ailvvda~~G~~e~g~~~~~QT~e----h~-~~~~~~--gv~~iiv~iNKmD~~~~d~~~~--------~~~~~el~~ 173 (239)
T d1f60a3 109 DCAILIIAGGVGEFEAGISKDGQTRE----HA-LLAFTL--GVRQLIVAVNKMDSVKWDESRF--------QEIVKETSN 173 (239)
T ss_dssp SEEEEEEECSHHHHHHHTCTTSHHHH----HH-HHHHHT--TCCEEEEEEECGGGGTTCHHHH--------HHHHHHHHH
T ss_pred CEEEEEEECCCCccccccCchHhHHH----HH-HHHHHc--CCCeEEEEEECCCCCCCCHHHH--------HHHHHHHHH
Confidence 9999999997641 222 22 122222 455 788999999886432100 011234455
Q ss_pred HHHHhCC----ceEEEecccCCCCHHH
Q psy8274 181 MAKEIGA----VKYLECSALTQKGLKT 203 (228)
Q Consensus 181 ~~~~~~~----~~~~evSa~~~~~v~~ 203 (228)
+....++ ++++++|+..|.|+-+
T Consensus 174 ~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 174 FIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp HHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHhcCCCCCcEEEEEEEccCCCccee
Confidence 5555553 5689999999988733
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=98.80 E-value=5.1e-09 Score=82.90 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=54.6
Q ss_pred ceEEEEEecC---ChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhh------------cc---Cccc
Q psy8274 112 DVFQICFSLV---NPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKE------------KK---LAPI 173 (228)
Q Consensus 112 d~vi~v~Dvt---~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~------------~~---~~~v 173 (228)
+.++++.|+. ++.++.... +........-..|.++|.||+|+............ .. ....
T Consensus 125 ~~~v~vvd~~~~~~~~~~~~~~--l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (244)
T d1yrba1 125 PLVVYISDPEILKKPNDYCFVR--FFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLM 202 (244)
T ss_dssp CEEEEEECGGGCCSHHHHHHHH--HHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHH
T ss_pred ceEEEEeccccccCchhHhhHH--HHHHHHHHHhCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 7889999975 444444332 11111111126899999999999976432211000 00 0000
Q ss_pred cHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHH
Q psy8274 174 TYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 211 (228)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~ 211 (228)
.........+..+.++++++||++|+|+++++..+-+.
T Consensus 203 ~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 203 AYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 00101111112344689999999999999999887764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=2.9e-08 Score=85.29 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=50.1
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHH--------HHHHH
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQG--------LSMAK 183 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~ 183 (228)
|.+|++.|. +-+-.+. +++..+.+. +.|+++|.||+|.....+ .....+....+.. ....+
T Consensus 137 d~~l~~~~~--~~~~~d~--~l~~~l~~~--~k~~~~V~nK~D~~~~~~-----~~~~~~~~~~e~~l~~ir~~~~~~l~ 205 (400)
T d1tq4a_ 137 DFFIIISAT--RFKKNDI--DIAKAISMM--KKEFYFVRTKVDSDITNE-----ADGEPQTFDKEKVLQDIRLNCVNTFR 205 (400)
T ss_dssp SEEEEEESS--CCCHHHH--HHHHHHHHT--TCEEEEEECCHHHHHHHH-----HTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCC--CCCHHHH--HHHHHHHHc--CCCEEEEEeCcccccchh-----hhcccccccHHHHHHHHHHHHHHHHH
Confidence 777777653 2232332 455666665 789999999999653221 0001111222221 11122
Q ss_pred HhC--CceEEEecccC--CCCHHHHHHHHHHHhc
Q psy8274 184 EIG--AVKYLECSALT--QKGLKTVFDEAIRAVL 213 (228)
Q Consensus 184 ~~~--~~~~~evSa~~--~~~v~~lf~~l~~~i~ 213 (228)
..+ -.++|.+|... ..++.++.+.+.+.+.
T Consensus 206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~ 239 (400)
T d1tq4a_ 206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 239 (400)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence 222 24578888764 4588888888777654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.56 E-value=8.9e-08 Score=77.28 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCChhhhHHhhhhCCCC--CCCCceeeeccceeEEEcCeEEeeeeeeCCCCcccccCCCCccccccchhHHhhcchhhhh
Q psy8274 1 AVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTGLSMAKEIGAVKYLE 78 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228)
|||||||+|.+++.... ....++...........+|. .+.++||||-....... ..+..
T Consensus 42 g~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~--------~~~~~--------- 102 (257)
T d1h65a_ 42 GVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYIN--------DMALN--------- 102 (257)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEEC--------HHHHH---------
T ss_pred CCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchH--------HHHHH---------
Confidence 89999999999976532 22234433334444556674 67889999965422110 00000
Q ss_pred ccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCC---CCCEEEEEeCCC
Q psy8274 79 CSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCP---STPIILVGTKLD 154 (228)
Q Consensus 79 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~---~~piilv~nK~D 154 (228)
.+..... ....+++++|.+++... +-... ..+..+...+. -.++++|.||+|
T Consensus 103 ---------------~i~~~~~-------~~~~~~il~v~~~~~~r~~~~~~--~~l~~l~~~fg~~~~~~~ivv~t~~D 158 (257)
T d1h65a_ 103 ---------------IIKSFLL-------DKTIDVLLYVDRLDAYRVDNLDK--LVAKAITDSFGKGIWNKAIVALTHAQ 158 (257)
T ss_dssp ---------------HHHHHTT-------TCEECEEEEEEESSCCCCCHHHH--HHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred ---------------HHHHHHh-------cCCCCeEEEEEECCCCCCCHHHH--HHHHHHHHHcchhhhhCEEEEEECcc
Confidence 0000000 01128999998886532 22222 34444444432 257899999999
Q ss_pred CCCch
Q psy8274 155 LRDDK 159 (228)
Q Consensus 155 l~~~~ 159 (228)
...+.
T Consensus 159 ~~~~~ 163 (257)
T d1h65a_ 159 FSPPD 163 (257)
T ss_dssp CCCGG
T ss_pred cCCcC
Confidence 88643
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=4.6e-08 Score=82.13 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.4
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCC
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLR 156 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~ 156 (228)
|++++|.|+.++-...-.. .+...... +.|++++.||+|..
T Consensus 121 D~allVVda~eGv~~qT~~--~~~~a~~~--~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 121 DGALVVVDTIEGVCVQTET--VLRQALGE--RIKPVVVINKVDRA 161 (341)
T ss_dssp SEEEEEEETTTBSCHHHHH--HHHHHHHT--TCEEEEEEECHHHH
T ss_pred CceEEEEecccCcchhHHH--HHHHHHHc--CCCeEEEEECcccc
Confidence 9999999999876665543 33333333 68999999999965
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.19 E-value=8.4e-06 Score=65.95 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=52.0
Q ss_pred CCChhhhHHhhhhCCC-CCCCCceeeeccceeEEEcC------------e---EEeeeeeeCCCCcccccCCCCcccccc
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------------K---PINLGLWDTAGQEDYDRLRPLSYPQTG 64 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------------~---~~~~~i~D~~g~~~~~~~~~~~~~~~~ 64 (228)
|||||||++++++... .+.|..|+-+..-..+.+.. + ...+.+.|+||-- ++
T Consensus 12 n~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi----------~g-- 79 (278)
T d1jala1 12 NVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV----------AG-- 79 (278)
T ss_dssp TSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC----------TT--
T ss_pred CCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccC----------CC--
Confidence 7999999999997664 34455554333333333322 1 1357888999832 23
Q ss_pred chhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC
Q psy8274 65 LSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV 121 (228)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt 121 (228)
|..|.+++..|..+++.. |++++|.|+.
T Consensus 80 ----------------a~~g~Glg~~FL~~ir~~-------------d~LihVVr~f 107 (278)
T d1jala1 80 ----------------ASKGEGLGNKFLANIRET-------------DAIGHVVRCF 107 (278)
T ss_dssp ----------------HHHHGGGTCCHHHHHHTC-------------SEEEEEEECS
T ss_pred ----------------cccCCCccHHHHHHHHhc-------------cceEEEeecc
Confidence 267788888888888886 9999999863
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.02 E-value=6.6e-06 Score=68.22 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=48.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|.+++|..+...+...... .-+.. .+=++|.||+|+.......... ..+...... .
T Consensus 166 D~~v~v~~p~~GD~iQ~~k----~gilE----~aDi~vvNKaD~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~ 228 (323)
T d2qm8a1 166 DFFLVLMLPGAGDELQGIK----KGIFE----LADMIAVNKADDGDGERRASAA---------ASEYRAALHILTPPSAT 228 (323)
T ss_dssp SEEEEEECSCC------CC----TTHHH----HCSEEEEECCSTTCCHHHHHHH---------HHHHHHHHTTBCCSBTT
T ss_pred ceEEEEeeccchhhhhhhh----hhHhh----hhheeeEeccccccchHHHHHH---------HHHHHHHhhcccccccC
Confidence 9999999988765554332 11111 2337788999987654321110 001111111 1
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|. .+++.+||++|.|++++++.+.+..
T Consensus 229 ~~-p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 229 WT-PPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp BC-CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CC-CceEEEEecCCCCHHHHHHHHHHHH
Confidence 33 6899999999999999999997654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=1.2e-05 Score=63.08 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=58.3
Q ss_pred CCCCceEEEEEecCChhh-HHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHh-
Q psy8274 108 KKRCDVFQICFSLVNPAS-FENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEI- 185 (228)
Q Consensus 108 ~~~~d~vi~v~Dvt~~~s-~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 185 (228)
.-|.|.+++|+.+.+|.. ..-+ +.++-..... ++|.+||.||+||.+... .+....+...+
T Consensus 8 vANiD~vliV~s~~~P~~~~~~l-dR~Lv~a~~~--~i~pvIvlnK~DL~~~~~--------------~~~~~~~~~~~~ 70 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYII-DKFLVLAEKN--ELETVMVINKMDLYDEDD--------------LRKVRELEEIYS 70 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH--------------HHHHHHHHHHHT
T ss_pred cccCCEEEEEEeCCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEeCcccCCHHH--------------HHHHHHhhcccc
Confidence 356799999999887654 3434 3666666555 789999999999987532 12222333322
Q ss_pred CCceEEEecccCCCCHHHHHHHH
Q psy8274 186 GAVKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 186 ~~~~~~evSa~~~~~v~~lf~~l 208 (228)
+..+.+.+|++++.|++++...+
T Consensus 71 ~~~~v~~vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 71 GLYPIVKTSAKTGMGIEELKEYL 93 (225)
T ss_dssp TTSCEEECCTTTCTTHHHHHHHH
T ss_pred cceeEEEeccccchhHhhHHHHh
Confidence 22578999999999999988765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=4e-06 Score=69.67 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=46.6
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHH-------H
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAK-------E 184 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~ 184 (228)
|.+++|.++... +.+. -...-+.+. +=++|.||+|+....... ....+.....+ .
T Consensus 169 D~~l~v~~P~~G---d~iq-~~k~gi~e~----aDi~VvNKaD~~~~~~~~----------~~~~~~~~al~~~~~~~~~ 230 (327)
T d2p67a1 169 DCFISLQIAGGG---DDLQ-GIKKGLMEV----ADLIVINKDDGDNHTNVA----------IARHMYESALHILRRKYDE 230 (327)
T ss_dssp SEEEEEECC---------C-CCCHHHHHH----CSEEEECCCCTTCHHHHH----------HHHHHHHHHHHHSCCSBTT
T ss_pred ceEEEEecCCCc---hhhh-hhchhhhcc----ccEEEEEeecccchHHHH----------HHHHHHHHHhhhcccCCCC
Confidence 888988766544 3332 222233333 226778999988743211 11111112111 2
Q ss_pred hCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 185 IGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 185 ~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
|. ++++.+||++|+|++++++.+.+..
T Consensus 231 w~-p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 231 WQ-PRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp BC-CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred Cc-ceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 33 5799999999999999999987644
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.70 E-value=7.4e-06 Score=64.57 Aligned_cols=86 Identities=23% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCCceEEEEEecCChh-hHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCC
Q psy8274 109 KRCDVFQICFSLVNPA-SFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGA 187 (228)
Q Consensus 109 ~~~d~vi~v~Dvt~~~-s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (228)
-|+|.+++|+++.+|. ++.-+. .++-..... ++|.+||.||+||.+..+..+ ...........+|
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~id-R~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~----------~~~~~~~~y~~~g- 74 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLD-RFLVLVEAN--DIQPIICITKMDLIEDQDTED----------TIQAYAEDYRNIG- 74 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHH-HHHHHHHTT--TCEEEEEEECGGGCCCHHHHH----------HHHHHHHHHHHHT-
T ss_pred cccCEEEEEEECCCCCCCHHHHH-HHHHHHHHc--CCCEEEEEecccccccHHHHH----------HHHHHHHHHhhcc-
Confidence 4679999999987764 344443 665554444 788899999999987532110 0111223344568
Q ss_pred ceEEEecccCCCCHHHHHHHH
Q psy8274 188 VKYLECSALTQKGLKTVFDEA 208 (228)
Q Consensus 188 ~~~~evSa~~~~~v~~lf~~l 208 (228)
.+++.+|++++.|++++...+
T Consensus 75 ~~v~~~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 75 YDVYLTSSKDQDSLADIIPHF 95 (231)
T ss_dssp CCEEECCHHHHTTCTTTGGGG
T ss_pred ccceeeecCChhHHHHHHHhh
Confidence 589999999999998876543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.68 E-value=3.3e-05 Score=62.18 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEE
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYL 191 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (228)
|+||+|.|+-+|.+..+- .+.+...+.|+++|.||+||..... .++-..+.+..+ ..++
T Consensus 17 DvIl~V~DaR~P~ss~~~------~l~~~~~~Kp~IlVlNK~DLv~~~~--------------~~~w~~~f~~~~-~~~i 75 (273)
T d1puja_ 17 DIVYELVDARIPMSSRNP------MIEDILKNKPRIMLLNKADKADAAV--------------TQQWKEHFENQG-IRSL 75 (273)
T ss_dssp SEEEEEEETTSTTTTSCH------HHHHHCSSSCEEEEEECGGGSCHHH--------------HHHHHHHHHTTT-CCEE
T ss_pred CEEEEEEECCCCCCCCCH------HHHHHHcCCCeEEEEECccCCchHH--------------HHHHHHHHHhcC-Cccc
Confidence 999999999888775532 1222223689999999999997521 112233334445 5789
Q ss_pred EecccCCCCHHHHHHHHHHHh
Q psy8274 192 ECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 192 evSa~~~~~v~~lf~~l~~~i 212 (228)
.+|++++.++..+...+.+.+
T Consensus 76 ~isa~~~~~~~~~~~~~~~~l 96 (273)
T d1puja_ 76 SINSVNGQGLNQIVPASKEIL 96 (273)
T ss_dssp ECCTTTCTTGGGHHHHHHHHH
T ss_pred eeecccCCCccccchhhhhhh
Confidence 999999999888777665543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.63 E-value=4.2e-05 Score=62.25 Aligned_cols=81 Identities=30% Similarity=0.403 Sum_probs=54.4
Q ss_pred CCChhhhHHhhhhCCC--CCCCCceeeeccceeEEEcCe---------------EEeeeeeeCCCCcccccCCCCccccc
Q psy8274 1 AVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PINLGLWDTAGQEDYDRLRPLSYPQT 63 (228)
Q Consensus 1 gvGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~~~~~~~~~~ 63 (228)
|||||||++.+++... .+.|.-|+-+.....+.+... ...+++.|++|--. +
T Consensus 20 n~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~----------g- 88 (296)
T d1ni3a1 20 NVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK----------G- 88 (296)
T ss_dssp SSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC----------C-
T ss_pred CCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc----------c-
Confidence 7999999999997643 466666654433333443321 24678889987432 2
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCCCCCCCCCceEEEEEecCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLVN 122 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt~ 122 (228)
+..|.+++.-|..+.+.. |++++|.|+.+
T Consensus 89 -----------------A~~g~GLGn~fL~~ir~~-------------d~lihVV~~f~ 117 (296)
T d1ni3a1 89 -----------------ASTGVGLGNAFLSHVRAV-------------DAIYQVVRAFD 117 (296)
T ss_dssp -----------------CCSSSSSCHHHHHHHTTC-------------SEEEEEEECCC
T ss_pred -----------------cccccccHHHHHHHhhcc-------------ceeEEEEeccC
Confidence 256677777777776664 99999999865
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=0.00052 Score=55.19 Aligned_cols=45 Identities=24% Similarity=0.110 Sum_probs=29.3
Q ss_pred ceEEEEEecCChhhHHHHHHhhHHHHhhhCCCCCEEEEEeCCCCCCch
Q psy8274 112 DVFQICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDK 159 (228)
Q Consensus 112 d~vi~v~Dvt~~~s~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 159 (228)
+++++|.+.+.+-+-.... .+...+... ..++++|.||+|+.++.
T Consensus 164 ~~il~v~~a~~~~~~~~~~-~~~~~~~~~--~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 164 CLILAVSPANSDLANSDAL-KIAKEVDPQ--GQRTIGVITKLDLMDEG 208 (299)
T ss_dssp EEEEEEEESSSCGGGCHHH-HHHHHHCTT--CSSEEEEEECGGGSCTT
T ss_pred ceeeeecccccchhhhHHH-HHHHHhCcC--CCceeeEEeccccccch
Confidence 5677787777655554443 444443333 46899999999988753
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.93 E-value=0.00041 Score=56.15 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=14.5
Q ss_pred CCChhhhHHhhhhCCC
Q psy8274 1 AVGKTCLLISYTTNAF 16 (228)
Q Consensus 1 gvGKTsli~~~~~~~~ 16 (228)
++|||||+|.+++..+
T Consensus 34 ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 34 SSGKSSVLENIVGRDF 49 (306)
T ss_dssp SSSHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHhCCCC
Confidence 5899999999998876
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.68 E-value=0.0012 Score=53.56 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=12.3
Q ss_pred CCChhhhHHhhhhCCC-CCCCC
Q psy8274 1 AVGKTCLLISYTTNAF-PGEYI 21 (228)
Q Consensus 1 gvGKTsli~~~~~~~~-~~~~~ 21 (228)
|||||||+|.+++... .+.|.
T Consensus 10 n~GKStlfn~lt~~~~~v~nyp 31 (319)
T d1wxqa1 10 NVGKSTFFSAATLVDVEIANYP 31 (319)
T ss_dssp TSSHHHHHHHHHC---------
T ss_pred CCCHHHHHHHHHCCCCchhcCC
Confidence 7999999999996543 34444
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.0038 Score=48.12 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=13.0
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||+++++..
T Consensus 13 GaGKTTll~~lL~~ 26 (222)
T d1nija1 13 GAGKTTLLRHILNE 26 (222)
T ss_dssp SSSCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhc
Confidence 89999999999985
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0027 Score=50.52 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCChhhhHHhhhhCCCCC-CCCceeeeccceeEEEcCeEEeeeeeeCCCCc
Q psy8274 1 AVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPINLGLWDTAGQE 50 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 50 (228)
|||||||+|++.+..-.. ...|.+... ...+.++. .+.+.||||--
T Consensus 122 NvGKSsliN~L~~~~~~~~~~~pG~Tr~-~~~i~~~~---~~~l~DTPGi~ 168 (273)
T d1puja_ 122 NVGKSTLINRLAKKNIAKTGDRPGITTS-QQWVKVGK---ELELLDTPGIL 168 (273)
T ss_dssp TSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred ccchhhhhhhhhccceEEECCccccccc-ceEEECCC---CeEEecCCCcc
Confidence 799999999999765321 111111111 12233333 47888999964
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.0076 Score=46.60 Aligned_cols=50 Identities=18% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCChhhhHHhhhhCCCCCCC--C-----ceeeeccceeEEEcCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEY--I-----PTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~--~-----~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++....-.... . .....+...-+.+++. -.++||||...+.
T Consensus 105 GVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~ 161 (225)
T d1u0la2 105 GVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE 161 (225)
T ss_dssp TSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred CCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence 89999999999865322110 0 1111122233444432 3667999976554
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0077 Score=44.33 Aligned_cols=40 Identities=93% Similarity=1.406 Sum_probs=35.1
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVP 103 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 103 (228)
+..+++..+.+.+.++||++|.||++.|...++.+|.|-|
T Consensus 144 ~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~pp~ 183 (183)
T d1mh1a_ 144 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP 183 (183)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCCCC
Confidence 4566777788899999999999999999999999998844
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.14 E-value=0.0084 Score=46.53 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=24.9
Q ss_pred CCChhhhHHhhhhCCCCCC-------CCceeeeccceeEEEcCeEEeeeeeeCCCCcccc
Q psy8274 1 AVGKTCLLISYTTNAFPGE-------YIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYD 53 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 53 (228)
|||||||+|++....-... .......+...-+..+|. .++||||...+.
T Consensus 107 GVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~ 162 (231)
T d1t9ha2 107 GVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE 162 (231)
T ss_dssp HHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred CccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence 7999999999986532110 000011112222344552 367999986664
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.011 Score=43.67 Aligned_cols=38 Identities=76% Similarity=1.092 Sum_probs=34.4
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCP 101 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 101 (228)
++.+|++++++.+.++||++|.|+++.|.+.++.+|.|
T Consensus 148 ~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il~P 185 (185)
T d2atxa1 148 GQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185 (185)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHcCC
Confidence 56788888999999999999999999999999998865
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.026 Score=41.61 Aligned_cols=41 Identities=61% Similarity=0.869 Sum_probs=35.4
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhCCCCC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLCPVPT 104 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 104 (228)
++.+++.+.+..+.++||++|.||++.|...++.++.+..+
T Consensus 142 ~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~~ 182 (191)
T d2ngra_ 142 AEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182 (191)
T ss_dssp HHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSCCST
T ss_pred HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcCcCC
Confidence 55677888889999999999999999999999998876543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=90.40 E-value=0.04 Score=39.11 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=12.1
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++++..
T Consensus 12 GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 12 GTGKTTLLKKLIP 24 (170)
T ss_dssp TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999985
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.056 Score=39.10 Aligned_cols=36 Identities=53% Similarity=0.857 Sum_probs=32.0
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (228)
++.++++++...+.++||++|.|+++.|...++..|
T Consensus 141 ~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 141 GRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176 (177)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 567788888889999999999999999999988875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.37 E-value=0.07 Score=38.16 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=11.8
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|||||||+++++.
T Consensus 11 gSGKTTli~~l~~ 23 (165)
T d1xjca_ 11 HSGKTTLMEKWVA 23 (165)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999975
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.27 E-value=0.089 Score=37.42 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=19.4
Q ss_pred HHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHh
Q psy8274 178 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 212 (228)
Q Consensus 178 ~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i 212 (228)
...+.+.++ .+++.+.+ .++++.+..++..|
T Consensus 148 ~~~~l~~~~-~~~i~i~~---~~~~e~~~~i~~~I 178 (192)
T d1lw7a2 148 LKKLLDKYK-VPYIEIES---PSYLDRYNQVKAVI 178 (192)
T ss_dssp HHHHHHGGG-CCCEEEEC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCEEEeCC---CCHHHHHHHHHHHH
Confidence 445556667 46777754 35777777666654
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=0.25 Score=38.83 Aligned_cols=52 Identities=19% Similarity=-0.074 Sum_probs=29.8
Q ss_pred CCChhhhHHhhhhCCCCCCCC-----ceeeeccceeEEEcCeEEeeeeeeCCCCccc
Q psy8274 1 AVGKTCLLISYTTNAFPGEYI-----PTVFDNYSANVMVDGKPINLGLWDTAGQEDY 52 (228)
Q Consensus 1 gvGKTsli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 52 (228)
++|||+|+|++.+..+.-... .|.|.-....-..++....+.++||.|....
T Consensus 42 ~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 42 RTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp TSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 589999999999765321111 2223211111112455567888999997653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=83.55 E-value=0.17 Score=34.98 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+|||||++++...
T Consensus 12 GsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 12 GSGKSTWAREFIAK 25 (152)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 89999999998753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.21 Score=35.65 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=32.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhhC
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVLC 100 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 100 (228)
++.++.+..++.+.++||++|.|+++.|...++.++.
T Consensus 137 ~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 137 AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence 5678888888899999999999999999999888763
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=83.07 E-value=0.18 Score=35.81 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=12.0
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
|+|||||++.+++
T Consensus 10 G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 10 GVGKTTLVKKIVE 22 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh
Confidence 8999999999986
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=0.24 Score=35.26 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=31.5
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHhh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 99 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 99 (228)
++.+++..+.+.+.++||++|.|+++.|...++.++
T Consensus 136 ~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l 171 (175)
T d1ky3a_ 136 AQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171 (175)
T ss_dssp HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 456778888899999999999999999999888765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.25 Score=35.00 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=30.7
Q ss_pred cchhHHhhcchhhhhccccccccchhHHHHHHHHh
Q psy8274 64 GLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAV 98 (228)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 98 (228)
+..++++..++.+.++||++|.||++.|...++.+
T Consensus 131 ~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 131 GQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence 56777777888999999999999999999988775
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=81.69 E-value=0.6 Score=33.40 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=13.2
Q ss_pred CCChhhhHHhhhhCC
Q psy8274 1 AVGKTCLLISYTTNA 15 (228)
Q Consensus 1 gvGKTsli~~~~~~~ 15 (228)
|+|||||++.++.+-
T Consensus 43 GaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 43 GAGKTTLTRGMLQGI 57 (158)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHhhc
Confidence 899999999999653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=81.34 E-value=0.23 Score=34.65 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=11.9
Q ss_pred CCChhhhHHhhhh
Q psy8274 1 AVGKTCLLISYTT 13 (228)
Q Consensus 1 gvGKTsli~~~~~ 13 (228)
||||||+++++..
T Consensus 12 GsGKTTva~~L~~ 24 (176)
T d2bdta1 12 GVGKSTTCKRLAA 24 (176)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8999999999975
|
| >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Formyltetrahydrofolate synthetase species: Moorella thermoacetica [TaxId: 1525]
Probab=81.14 E-value=1.8 Score=36.72 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=72.1
Q ss_pred hhhccccccccch-hHHHHHHHHhhCCCCCCCCCCCCceEEEEEecC----------------C----hhhHHHHHHhhH
Q psy8274 76 YLECSALTQKGLK-TVFDEAIRAVLCPVPTVPKKKRCDVFQICFSLV----------------N----PASFENVRAKWY 134 (228)
Q Consensus 76 ~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~Dvt----------------~----~~s~~~~~~~~~ 134 (228)
+..|-+..|-+++ |.|.+..-+..+..| +++++|--+- | ...|.++. +.+
T Consensus 291 yvVTEAGFGaDlGaEKF~dIkcr~~gl~P--------~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~-rHI 361 (549)
T d1eg7a_ 291 YVVTEAGFGADLGAEKFYDVKCRYAGFKP--------DATVIVATVRALKMHGGVPKSDLATENLEALREGFANLE-KHI 361 (549)
T ss_dssp EEEEEBSSCTTTHHHHHHHTHHHHHTCCC--------CEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHH-HHH
T ss_pred eEEEeccccCCccchhhhccccccCCCCC--------ceEEEEeehhhhhhcCCCChHHcCcccHHHHHHHHHHHH-HHH
Confidence 3334455555554 566677777777888 9999986532 1 22355555 445
Q ss_pred HHHhhhCCCCCEEEEEeCCCCCCchHHHHHHhhccCccccHHHHHHHHHHhCCceEEEecccCCCCHHHHHHHHHHHhc
Q psy8274 135 PEVRHHCPSTPIILVGTKLDLRDDKETIEKLKEKKLAPITYPQGLSMAKEIGAVKYLECSALTQKGLKTVFDEAIRAVL 213 (228)
Q Consensus 135 ~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~evSa~~~~~v~~lf~~l~~~i~ 213 (228)
+.++++ ..|++|+.|+.....+.+ .+....+|.+.|+ .+...=++-|.|-.+|-+.+++.+-
T Consensus 362 eNi~~f--GlpvVVAIN~F~tDTd~E--------------i~~i~~~~~~~g~-~~a~~wa~GG~Ga~dLA~~Vv~a~e 423 (549)
T d1eg7a_ 362 ENIGKF--GVPAVVAINAFPTDTEAE--------------LNLLYELCAKAGA-EVALSWAKGGEGGLELARKVLQTLE 423 (549)
T ss_dssp HHHHTT--TCCEEEEEECCTTCCHHH--------------HHHHHHHTTTSEE-EEECCTTTGGGGGHHHHHHHHHHHH
T ss_pred Hhhhhc--CCCeEEEeccCCccchhH--------------HHHHHHHHhhcCc-ceeeecccCccchHHHHHHHHHHHh
Confidence 555554 899999999998665432 2334566766673 4444456677888899888888774
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=80.17 E-value=0.27 Score=34.43 Aligned_cols=14 Identities=36% Similarity=0.389 Sum_probs=12.2
Q ss_pred CCChhhhHHhhhhC
Q psy8274 1 AVGKTCLLISYTTN 14 (228)
Q Consensus 1 gvGKTsli~~~~~~ 14 (228)
|+||||+++.+...
T Consensus 14 GsGKTTia~~La~~ 27 (173)
T d1rkba_ 14 GVGKTTLGKELASK 27 (173)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999753
|