Psyllid ID: psy8284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVLSPAKHVR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccc
Coil and Loop (DISEMBL)
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRAllddpcpnfetlgtpsERILFIYALLSFSSITETILNCIyehrpywncykfqdistegvqstplhipraefkyegnpkqeiyatrdcypiqsqEFVRLCDERLDSliakaspvlvvlspakhvr
Flexible Loop (DISEMBL)
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSliakaspvlvvlspakhvr
Low Complexity Region (SEG)
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVLSPAKHVR
Disordered region (IsUnstruct)
****PACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVL*******
Disordered Region (DISOPRED)
*DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN**************YALLSFSSITETILNCIYEHRPYWNCYK********************************ATRDCYPIQSQEFV*LCDERLDSLIAKASPVLVVLSPA****
Disordered Region (DISEMBL)
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVLSPAKHVR
Disordered Region (DISPRO)
*DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIS******TPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVLSP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLIAKASPVLVVLSPAKHVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9UBN7	1215	Histone deacetylase 6 OS=	yes	N/A	0.282	0.039	0.508	4e-10
Q969S8	669	Histone deacetylase 10 OS	no	N/A	0.523	0.133	0.346	7e-10
Q9Z2V5	1149	Histone deacetylase 6 OS=	yes	N/A	0.288	0.042	0.491	1e-09
Q6P3E7	666	Histone deacetylase 10 OS	no	N/A	0.576	0.147	0.327	3e-08
P53973	706	Histone deacetylase HDA1	yes	N/A	0.482	0.116	0.294	4e-07
P56523	687	Histone deacetylase clr3	yes	N/A	0.476	0.117	0.340	8e-06
O17323	869	Histone deacetylase 4 OS=	no	N/A	0.523	0.102	0.31	1e-05
Q8RX28	660	Histone deacetylase 5 OS=	yes	N/A	0.282	0.072	0.437	0.0002
Q20296	955	Histone deacetylase 6 OS=	no	N/A	0.5	0.089	0.288	0.0004
Q8GXJ1	552	Histone deacetylase 15 OS	no	N/A	0.358	0.110	0.387	0.0004

>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TPA +A L + L G A GK+ + LEGGY L++LAEG + +L  LL DPCP  E+ G 
Sbjct: 356 MAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGA 415

Query: 61  P 61
           P
Sbjct: 416 P 416

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8

>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TP C+AHL   L   A G+V  +LEGGY L+SLAE   +T++ LL DP P       
Sbjct: 275 MQATPECFAHLTQLLQVLAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMA 334

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIS 101
           P +  L            E+I +      P+W   + QD++
Sbjct: 335 PCQSAL------------ESIQSARAAQAPHWKSLQQQDVT 363

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TPA +AHL + L G A GK+ + LEGGY L++LA+G + +L  LL DPCP  E+   
Sbjct: 355 MAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLESCVV 414

Query: 61  P 61
           P
Sbjct: 415 P 415

In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TP C+AHL   L   A G++  +LEGGY L+SLA+   + ++ LL DP P    L  
Sbjct: 275 MQATPECFAHLTQLLQVLAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMV 334

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIP 113
           P +  L            E+I +      PYW   + Q+++   V S+  H P
Sbjct: 335 PCQSAL------------ESIQSVQTAQTPYWTSLQ-QNVAP--VLSSSTHSP 372

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HDA1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNF-ETLGTP 61
           +TP+CY H+ + L   A+G + V+LEGGY L ++A  A    + L+ +P     + L  P
Sbjct: 350 VTPSCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPPDELPDPLSDP 409

Query: 62  SERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
              ++            E I   I     YWNC++
Sbjct: 410 KPEVI------------EMIDKVIRLQSKYWNCFR 432

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=clr3 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
           +TPA YAH+   L G A GKV + LEGGY L S++  A    ++L          LG P 
Sbjct: 339 LTPAAYAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSL----------LGIPP 388

Query: 63  ERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
            R+   YA         TI +       YW C +
Sbjct: 389 GRLHTTYAC---PQAVATINHVTKIQSQYWRCMR 419

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required for proper positioning of nucleosomes at heterochromatic loci and for transcriptional gene silencing (TGS) function of the Snf2/Hdac-containing repressor complex (SHREC).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL--DDPCPNFETLG 59
           ++TP  + ++  SL  +A GKV + LEGGY LKS++E A   ++AL+   D      ++ 
Sbjct: 751 EVTPEMFGYMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVA 810

Query: 60  TPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQD 99
             S         L   S  ET+   I  H+ YW     Q+
Sbjct: 811 LES---------LPNPSAVETLQKVIAIHKSYWPALHGQE 841

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). May be involved in muscle development.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD 50
           +TP  Y+ +L  L  FAQGK+ + LEGGY L S+A+ +   ++ LL+D
Sbjct: 303 VTPYGYSVMLKKLMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLLED 350

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M +TP  Y+H+L  L   AQG++ V+LEGGY  +  A      +R LL     + E    
Sbjct: 285 MCLTPDGYSHILYHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEA 344

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKF 97
           P E            S  ++ ++ +   R +WNC+ +
Sbjct: 345 PKE------------STVDSCVSLVSVLRHHWNCFDY 369

Probable histone deacetylase. Histone deacetylases are responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL-DDPCPNFETLGT 60
           D+TPA Y+ +   L     GK+ VILEGGY L+S++  A   ++ LL ++P        T
Sbjct: 415 DVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVIKVLLGENPENELPIATT 474

Query: 61  PS 62
           PS
Sbjct: 475 PS 476

Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 9

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
321473004	1022	putative histone deacetylase HDAC6 prote	0.841	0.139	0.518	2e-34
380012501	1179	PREDICTED: LOW QUALITY PROTEIN: histone	0.823	0.118	0.509	4e-33
350400444	1173	PREDICTED: histone deacetylase 6-like [B	0.811	0.117	0.515	1e-32
340718184	1160	PREDICTED: histone deacetylase 6-like [B	0.811	0.118	0.515	1e-32
328781356	1129	PREDICTED: LOW QUALITY PROTEIN: histone	0.811	0.122	0.515	2e-32
383864231	1169	PREDICTED: histone deacetylase 6-like [M	0.823	0.119	0.515	3e-32
322785610	1170	hypothetical protein SINV_07643 [Solenop	0.829	0.120	0.525	4e-32
332021768	1204	Histone deacetylase 6 [Acromyrmex echina	0.823	0.116	0.496	3e-31
242022432	1146	histone deacetylase hda2, putative [Pedi	0.811	0.120	0.453	2e-30
170052821	1108	histone deacetylase [Culex quinquefascia	0.823	0.126	0.452	5e-27

>gi|321473004|gb|EFX83972.1| putative histone deacetylase HDAC6 protein [Daphnia pulex]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 103/162 (63%), Gaps = 19/162 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M+ITPACY+HL +SL G AQGK+AV+LEGGYCLKSLAEGAALTLR LL DPCP    +  
Sbjct: 316 MEITPACYSHLTSSLMGLAQGKLAVVLEGGYCLKSLAEGAALTLRTLLGDPCPVIAKIEQ 375

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQ---DISTEGVQSTPLH-IPRAE 116
           P +            SI E+IL+ IY  RP W C +FQ   D S  G Q    H +P   
Sbjct: 376 PCQ------------SIQESILSAIYVLRPMWKCLQFQGRFDASKVGSQKEGKHFVPSVT 423

Query: 117 FKYEGNP-KQEIYATRDCYPIQSQEFVRLCDERLDSLIAKAS 157
           F  EG+  KQ  +ATR+CYP+Q+ E + L D+RLD LI + S
Sbjct: 424 F--EGSDIKQTFFATRNCYPVQNNETIDLLDQRLDKLIKETS 463

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012501|ref|XP_003690319.1| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6-like [Apis florea]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 107/159 (67%), Gaps = 19/159 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M ITPACYAHLL+SL   A GKVAVILEGGYCLKSL+E AALTLR LL+DPCP  ETL  
Sbjct: 394 MLITPACYAHLLSSLLCLASGKVAVILEGGYCLKSLSESAALTLRTLLNDPCPMLETLTL 453

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQD------ISTEGVQSTPLHIPR 114
           PS             SI +TILN IY H+PYW CY++QD       S    ++T  ++P 
Sbjct: 454 PS------------ISIRDTILNTIYTHKPYWKCYQYQDTYSINSTSNNKEENTNQYLPV 501

Query: 115 AEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
             FK E + + ++Y T++CYP+Q+QE + + +++L++LI
Sbjct: 502 VIFK-ETDVRPKVYETQNCYPVQTQEIIEIIEKQLNTLI 539

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400444|ref|XP_003485837.1| PREDICTED: histone deacetylase 6-like [Bombus impatiens]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 105/161 (65%), Gaps = 23/161 (14%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M +TPACYAHLL+SL   A GKVAVILEGGYCLKSLAE AALTLR LL DPCP  ETL  
Sbjct: 390 MLLTPACYAHLLSSLLSLASGKVAVILEGGYCLKSLAESAALTLRTLLGDPCPMLETLTL 449

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDI--------STEGVQSTPLHI 112
           PS             S+ +TILN IY H+PYW CY++QD         + EG  ST  ++
Sbjct: 450 PS------------ISVRDTILNTIYAHKPYWKCYQYQDTYSINSTTNNKEG--STNQYL 495

Query: 113 PRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
           P   FK   + K E+Y TR+CYP Q++E + + +++L++LI
Sbjct: 496 PVVTFK-GTDIKPEVYETRNCYPTQNKEVIEMIEKQLNTLI 535

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718184|ref|XP_003397551.1| PREDICTED: histone deacetylase 6-like [Bombus terrestris]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 105/161 (65%), Gaps = 23/161 (14%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M +TPACYAHLL+SL   A GKVAVILEGGYCLKSLAE AALTLR LL DPCP  ETL  
Sbjct: 377 MLLTPACYAHLLSSLLSLAAGKVAVILEGGYCLKSLAESAALTLRTLLGDPCPMLETLTL 436

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDI--------STEGVQSTPLHI 112
           PS             S+ +TILN IY H+PYW CY++QD         + EG  ST  ++
Sbjct: 437 PS------------ISVRDTILNTIYAHKPYWKCYQYQDTYSINSTTNNKEG--STNQYL 482

Query: 113 PRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
           P   FK   + K E+Y TR+CYP Q++E + + +++L++LI
Sbjct: 483 PVVTFK-GTDIKPEVYETRNCYPTQNKEVIEMIEKQLNTLI 522

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781356|ref|XP_001121726.2| PREDICTED: LOW QUALITY PROTEIN: histone deacetylase 6 [Apis mellifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 106/161 (65%), Gaps = 23/161 (14%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M ITPACYAHLL+SL   A GKVAVILEGGYCLKSL+E AALTLR LL DPCP  ETL  
Sbjct: 379 MLITPACYAHLLSSLLCLASGKVAVILEGGYCLKSLSESAALTLRTLLSDPCPMLETLTL 438

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTP--------LHI 112
           PS             SI +TILN IY H+PYW CY++QD  T  + STP         ++
Sbjct: 439 PS------------ISIRDTILNTIYTHKPYWKCYQYQD--TYSINSTPNNKEENTNQYL 484

Query: 113 PRAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
           P   FK E + + ++Y T++CYP+Q+QE + + +++L +LI
Sbjct: 485 PVIIFK-ETDVRPKVYETQNCYPVQTQEIIEIIEKQLSTLI 524

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864231|ref|XP_003707583.1| PREDICTED: histone deacetylase 6-like [Megachile rotundata]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 102/159 (64%), Gaps = 19/159 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M +TPACYAHLL+SL   A GKVAV+LEGGYCLKSLAE AALTLR LL DPCP  + L  
Sbjct: 380 MLVTPACYAHLLSSLLCLASGKVAVVLEGGYCLKSLAESAALTLRTLLGDPCPILQNLEL 439

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIST------EGVQSTPLHIPR 114
           PS             SI +TILN IY H+PYW CY++QD  +        V++   H+P 
Sbjct: 440 PSR------------SIRDTILNTIYAHKPYWKCYQYQDTYSINSTVNNKVENINQHLPT 487

Query: 115 AEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
             FK   N K EIY TR+CYP+Q++E V   +++L+ LI
Sbjct: 488 VIFK-GTNIKPEIYETRNCYPVQNKETVEAIEKQLNVLI 525

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785610|gb|EFZ12265.1| hypothetical protein SINV_07643 [Solenopsis invicta]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 17/158 (10%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M ITPACY+HLL+SL   A GKVAVILEGGYCLKSLAEGAALTLR LL DPCP  +TL  
Sbjct: 375 MLITPACYSHLLSSLLSLANGKVAVILEGGYCLKSLAEGAALTLRTLLGDPCPILQTLDL 434

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDI-STEGVQSTPLHIPRAE--- 116
           PS             SI ETILN IY H+PYW CY++QD  S   +      I       
Sbjct: 435 PS------------LSIRETILNVIYAHKPYWKCYQYQDTYSINNITHNKEEIANRHVVM 482

Query: 117 FKYEGNP-KQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
             Y+GN  K + Y TR+CYP+QS+E +   +++L+ LI
Sbjct: 483 VTYKGNEVKLDKYDTRNCYPVQSKETLETVEKKLNELI 520

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021768|gb|EGI62119.1| Histone deacetylase 6 [Acromyrmex echinatior]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 101/159 (63%), Gaps = 19/159 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M ITPACY+HLL+SL   A GKVAV+LEGGYCLKSLAEGAALTL+ LL DPCP  +TL  
Sbjct: 406 MLITPACYSHLLSSLLSLANGKVAVVLEGGYCLKSLAEGAALTLKTLLGDPCPVLQTLDL 465

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQD------ISTEGVQSTPLHIPR 114
           PS             SI +TILN IY H+PYW CY++QD      ++    +    H+  
Sbjct: 466 PS------------LSIRDTILNVIYSHKPYWKCYQYQDTHSINSVTHSKEEIANRHVVT 513

Query: 115 AEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSLI 153
             FK     K E Y TR+CYP+QS+E + + +++L+ LI
Sbjct: 514 MTFK-GSEVKLEKYDTRNCYPVQSKETLEVMEKKLNELI 551

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022432|ref|XP_002431644.1| histone deacetylase hda2, putative [Pediculus humanus corporis] gi|212516952|gb|EEB18906.1| histone deacetylase hda2, putative [Pediculus humanus corporis]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/172 (45%), Positives = 99/172 (57%), Gaps = 34/172 (19%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M+++PACY+HLL+ L G A GKVAVILEGGYCLKSL+EG ALTLR LL DP P+    G 
Sbjct: 335 MEVSPACYSHLLSPLMGLAGGKVAVILEGGYCLKSLSEGVALTLRTLLGDPAPSLIDFGL 394

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDI----------------STEG 104
           P +            S+ E+ILN IY H+PYW C++ QD                 STE 
Sbjct: 395 PCD------------SVVESILNVIYVHKPYWQCFQLQDAYDVDVNEGGGIKTRKKSTEK 442

Query: 105 ---VQSTPLHIPRAEFKYEGNP-KQEIYATRDCYPIQSQEFVRLCDERLDSL 152
                +T  H P  +F   GN  K + Y TRDCYPIQ +E  +  D++L+ L
Sbjct: 443 PSIAPTTKRHHPVVKFI--GNETKLDFYPTRDCYPIQEEETFKKLDQKLNHL 492

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052821|ref|XP_001862395.1| histone deacetylase [Culex quinquefasciatus] gi|167873617|gb|EDS37000.1| histone deacetylase [Culex quinquefasciatus]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 91/159 (57%), Gaps = 19/159 (11%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNF-ETLG 59
           M+ITPA Y HLL+ L   AQGKVAV+LEGGYCL SLAEG ALTLRALL DPCP   E L 
Sbjct: 355 MEITPAFYPHLLSPLMSLAQGKVAVVLEGGYCLTSLAEGGALTLRALLGDPCPLLVEKLQ 414

Query: 60  TPSERILFIYALLSFSSITETILNCIYEHRPYWN------CYKFQDISTEGVQSTPLHIP 113
            P E            S+ +TILNC++ HRPYW        Y  ++++    Q     + 
Sbjct: 415 PPCE------------SMQQTILNCVHSHRPYWKNLQLNATYGLEELNNVNPQPNFHQVI 462

Query: 114 RAEFKYEGNPKQEIYATRDCYPIQSQEFVRLCDERLDSL 152
           +   + E  P+   Y TR+CYP+Q+ E     +ERL  L
Sbjct: 463 QYYVQQEPKPEPVRYETRNCYPVQASEEKNRIEERLAML 501

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
FB|FBgn0026428	1138	HDAC6 "HDAC6" [Drosophila mela	0.7	0.104	0.427	4.5e-20
UNIPROTKB|H9KZJ3	615	HDAC10 "Uncharacterized protei	0.676	0.186	0.354	3.6e-11
ZFIN|ZDB-GENE-030131-3232	1081	hdac6 "histone deacetylase 6"	0.470	0.074	0.402	3.8e-11
ASPGD|ASPL0000014944	766	hdaA [Emericella nidulans (tax	0.682	0.151	0.353	3.6e-10
UNIPROTKB|F1MQP3	1128	HDAC6 "Uncharacterized protein	0.358	0.054	0.540	3.7e-10
UNIPROTKB|Q9UBN7	1215	HDAC6 "Histone deacetylase 6"	0.358	0.050	0.508	2.2e-09
UNIPROTKB|B4DZH6	1229	HDAC6 "Histone deacetylase 6"	0.358	0.049	0.508	2.3e-09
UNIPROTKB|I3LEZ7	1130	HDAC6 "Uncharacterized protein	0.358	0.053	0.524	2.6e-09
UNIPROTKB|F1PN11	1157	HDAC6 "Uncharacterized protein	0.564	0.082	0.394	2.7e-09
MGI|MGI:1333752	1149	Hdac6 "histone deacetylase 6"	0.358	0.053	0.491	4.3e-09

FB|FBgn0026428 HDAC6 "HDAC6" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 59/138 (42%), Positives = 76/138 (55%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNF-ETLG 59
             M++TPACY HLLN L   A  +VAV+LEGGYCL SLAEGAALTLR+LL DPCP   ET+ 
Sbjct:   387 MEVTPACYPHLLNPLLRLADARVAVVLEGGYCLDSLAEGAALTLRSLLGDPCPPLVETVP 446

Query:    60 TPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIST-----EGVQSTPLHIPR 114
              P             + + + +L+CI  HRP+W C + Q         +  +   LH   
Sbjct:   447 LPR------------AELAQALLSCIAVHRPHWRCLQLQQTYDCVELQDRDKEEDLHTVL 494

Query:   115 AEFKYEGNPKQEIYATRD 132
               +   G P  + Y TRD
Sbjct:   495 RHW-IGGPPPMDRYPTRD 511

GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS

GO:0016575 "histone deacetylation" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0022904 "respiratory electron transport chain" evidence=IDA

UNIPROTKB|H9KZJ3 HDAC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 45/127 (35%), Positives = 62/127 (48%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M+ TP  +AHL + L   A GK+ VILEGGY LKSL+E   +T++ LL DP P       
Sbjct:   277 MNATPEVFAHLTHFLMQLAHGKLCVILEGGYHLKSLSESVCMTVKTLLRDPLPQVTGEMA 336

Query:    61 PSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLHIPRAEFKYE 120
             P             S+I E+I N    H+PYW    ++D S     ST   +P+     +
Sbjct:   337 PC-----------LSAI-ESIQNVRAAHKPYWKWLTYEDTSFLHNLSTRSDLPKTADITD 384

Query:   121 GNPKQEI 127
              N   +I
Sbjct:   385 SNETDKI 391

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-3232 hdac6 "histone deacetylase 6" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 37/92 (40%), Positives = 56/92 (60%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M ++P C++ L + L G AQG++ + LEGGY L+S AEG   ++R+LL DPCP+  + G 
Sbjct:   333 MQVSPECFSILTHMLKGVAQGRLVLALEGGYNLQSTAEGVCASMRSLLGDPCPHLPSSGA 392

Query:    61 PSERILFIYALLSFSSITETILNCIYEHRPYW 92
             P E  L         SI++TI + +Y   P+W
Sbjct:   393 PCESAL--------KSISKTISD-LY---PFW 412

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006476 "protein deacetylation" evidence=IGI

GO:0001525 "angiogenesis" evidence=IGI;IMP

GO:0016787 "hydrolase activity" evidence=IEA

ASPGD|ASPL0000014944 hdaA [Emericella nidulans (taxid:162425)]

 Score = 156 (60.0 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 47/133 (35%), Positives = 64/133 (48%)

Query:     3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
             +TPACYAH+ + L   AQGKVAV LEGGY  +S+++ A    + L+ +P P+  +   PS
Sbjct:   412 VTPACYAHMTHMLMTLAQGKVAVCLEGGYNFRSISKSALAVTKTLMGNP-PDRLSFTCPS 470

Query:    63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEGVQSTPLH-IPRAEFKYEG 121
             E    I  +   SSI             YW C   + I  EGV +  LH I RA   Y+ 
Sbjct:   471 EAA--ISTIRRVSSIQSD----------YWKCMYPKAIKNEGVWTDRLHDIIRA---YQA 515

Query:   122 NPKQEIYATRDCY 134
                 + Y     Y
Sbjct:   516 KQLYDNYKLTSLY 528

GO:0004407 "histone deacetylase activity" evidence=IMP;IDA

GO:0016575 "histone deacetylation" evidence=IMP;IDA

GO:0006348 "chromatin silencing at telomere" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:1900376 "regulation of secondary metabolite biosynthetic process" evidence=IMP

GO:1900197 "negative regulation of penicillin biosynthetic process" evidence=IMP

GO:0042316 "penicillin metabolic process" evidence=IMP

GO:0045460 "sterigmatocystin metabolic process" evidence=IMP

GO:0010913 "regulation of sterigmatocystin biosynthetic process" evidence=IMP

GO:0033553 "rDNA heterochromatin" evidence=IEA

GO:0031934 "mating-type region heterochromatin" evidence=IEA

GO:0031933 "telomeric heterochromatin" evidence=IEA

GO:0030874 "nucleolar chromatin" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0005721 "centromeric heterochromatin" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IEA

GO:0071585 "detoxification of cadmium ion" evidence=IEA

GO:0016584 "nucleosome positioning" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0031060 "regulation of histone methylation" evidence=IEA

GO:0000183 "chromatin silencing at rDNA" evidence=IEA

GO:0071276 "cellular response to cadmium ion" evidence=IEA

UNIPROTKB|F1MQP3 HDAC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M  TPA +A L + L G A+GK+ + LEGGY L SLAEG + TL  LL DPCP  E+ G 
Sbjct:   356 MAATPAGFAQLTHLLMGLAEGKLILSLEGGYNLHSLAEGVSATLHTLLGDPCPVLESPGA 415

Query:    61 P 61
             P
Sbjct:   416 P 416

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9UBN7 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M  TPA +A L + L G A GK+ + LEGGY L++LAEG + +L  LL DPCP  E+ G 
Sbjct:   356 MAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGA 415

Query:    61 P 61
             P
Sbjct:   416 P 416

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0097372 "NAD-dependent histone deacetylase activity (H3-K18 specific)" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=ISS;IDA

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISS

GO:0019899 "enzyme binding" evidence=ISS

GO:0016575 "histone deacetylation" evidence=ISS;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0000118 "histone deacetylase complex" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0090042 "tubulin deacetylation" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005829 "cytosol" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0004407 "histone deacetylase activity" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006476 "protein deacetylation" evidence=IMP

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IMP

GO:0043242 "negative regulation of protein complex disassembly" evidence=IMP

GO:0060632 "regulation of microtubule-based movement" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IMP

GO:0045861 "negative regulation of proteolysis" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0070848 "response to growth factor stimulus" evidence=IMP

GO:0016234 "inclusion body" evidence=IDA

GO:0016236 "macroautophagy" evidence=IMP

GO:0035967 "cellular response to topologically incorrect protein" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0032418 "lysosome localization" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0043014 "alpha-tubulin binding" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IMP

GO:0005901 "caveola" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0051354 "negative regulation of oxidoreductase activity" evidence=IC

GO:0010727 "negative regulation of hydrogen peroxide metabolic process" evidence=IC

GO:0070842 "aggresome assembly" evidence=IMP

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IMP

GO:0051788 "response to misfolded protein" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0030286 "dynein complex" evidence=IDA

GO:0010033 "response to organic substance" evidence=IMP

GO:0009636 "response to toxic substance" evidence=IMP

GO:0009967 "positive regulation of signal transduction" evidence=IMP

GO:0010469 "regulation of receptor activity" evidence=IMP

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=TAS

GO:0048156 "tau protein binding" evidence=IDA

GO:0070846 "Hsp90 deacetylation" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IMP

GO:0070840 "dynein complex binding" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|B4DZH6 HDAC6 "Histone deacetylase 6" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M  TPA +A L + L G A GK+ + LEGGY L++LAEG + +L  LL DPCP  E+ G 
Sbjct:   370 MAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGA 429

Query:    61 P 61
             P
Sbjct:   430 P 430

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LEZ7 HDAC6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M  TPA +A L + L G A GK+ + LEGGY L+SLAEG + +L  LL DPCP  E  G 
Sbjct:   366 MAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPLLEFPGA 425

Query:    61 P 61
             P
Sbjct:   426 P 426

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PN11 HDAC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 43/109 (39%), Positives = 57/109 (52%)

Query:     3 ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPS 62
             ++P  YAHL + L G A G+V +ILEGGY L S++E  A   R+LL DP P   TL  P 
Sbjct:   767 VSPEGYAHLTHLLMGLANGRVVLILEGGYNLTSISESMAACTRSLLGDP-PPLLTLSRPP 825

Query:    63 ERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDIST-EGVQSTPL 110
                  +   L+  SITETI      HR YW   +   +   EG  ++ L
Sbjct:   826 -----LSGALA--SITETI----QVHRRYWRSLRVMKVEDKEGPSTSEL 863

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0070848 "response to growth factor stimulus" evidence=IEA

GO:0070846 "Hsp90 deacetylation" evidence=IEA

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=IEA

GO:0070842 "aggresome assembly" evidence=IEA

GO:0070840 "dynein complex binding" evidence=IEA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048156 "tau protein binding" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0043241 "protein complex disassembly" evidence=IEA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0042903 "tubulin deacetylase activity" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=IEA

GO:0032418 "lysosome localization" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000118 "histone deacetylase complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1333752 Hdac6 "histone deacetylase 6" [Mus musculus (taxid:10090)]

 Score = 148 (57.2 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query:     1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             M  TPA +AHL + L G A GK+ + LEGGY L++LA+G + +L  LL DPCP  E+   
Sbjct:   355 MAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLESCVV 414

Query:    61 P 61
             P
Sbjct:   415 P 415

GO:0000118 "histone deacetylase complex" evidence=ISO

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0003779 "actin binding" evidence=IEA

GO:0004407 "histone deacetylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005874 "microtubule" evidence=ISO

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0005901 "caveola" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006476 "protein deacetylation" evidence=ISO;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IGI;IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IDA

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0010033 "response to organic substance" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISO

GO:0010870 "positive regulation of receptor biosynthetic process" evidence=ISO

GO:0016234 "inclusion body" evidence=ISO

GO:0016235 "aggresome" evidence=ISO

GO:0016236 "macroautophagy" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031078 "histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0031252 "cell leading edge" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032041 "NAD-dependent histone deacetylase activity (H3-K14 specific)" evidence=IEA

GO:0032129 "histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0032418 "lysosome localization" evidence=ISO

GO:0034739 "histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0034983 "peptidyl-lysine deacetylation" evidence=ISO

GO:0035967 "cellular response to topologically incorrect protein" evidence=ISO

GO:0042826 "histone deacetylase binding" evidence=ISO

GO:0042903 "tubulin deacetylase activity" evidence=ISO;IDA

GO:0043014 "alpha-tubulin binding" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0043162 "ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0043241 "protein complex disassembly" evidence=IGI

GO:0043242 "negative regulation of protein complex disassembly" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046969 "NAD-dependent histone deacetylase activity (H3-K9 specific)" evidence=IEA

GO:0046970 "NAD-dependent histone deacetylase activity (H4-K16 specific)" evidence=IEA

GO:0048156 "tau protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051788 "response to misfolded protein" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0070201 "regulation of establishment of protein localization" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=ISO

GO:0070840 "dynein complex binding" evidence=ISO

GO:0070842 "aggresome assembly" evidence=ISO;IGI

GO:0070845 "polyubiquitinated misfolded protein transport" evidence=ISO

GO:0070846 "Hsp90 deacetylation" evidence=ISO;IMP

GO:0070848 "response to growth factor stimulus" evidence=ISO

GO:0070932 "histone H3 deacetylation" evidence=IEA

GO:0070933 "histone H4 deacetylation" evidence=IEA

GO:0071218 "cellular response to misfolded protein" evidence=IMP

GO:0090035 "positive regulation of chaperone-mediated protein complex assembly" evidence=ISO

GO:0090042 "tubulin deacetylation" evidence=ISO;IDA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
cd10002	336	cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6,	2e-27
cd10003	350	cd10003, HDAC6-dom2, Histone deacetylase 6, domain	5e-20
cd11682	337	cd11682, HDAC6-dom1, Histone deacetylase 6, domain	6e-19
cd11683	337	cd11683, HDAC10, Histone deacetylase 10	5e-17
cd11600	313	cd11600, HDAC_Clr3, Class II Histone deacetylase C	4e-11
cd11681	377	cd11681, HDAC_classIIa, Histone deacetylases, clas	6e-11
cd09992	291	cd09992, HDAC_classII, Histone deacetylases and hi	5e-09
pfam00850	300	pfam00850, Hist_deacetyl, Histone deacetylase doma	6e-08
cd10007	420	cd10007, HDAC5, Histone deacetylase 5	0.001
cd11599	288	cd11599, HDAC_classII_2, Histone deacetylases and	0.003
cd10009	379	cd10009, HDAC9, Histone deacetylase 9	0.003
cd10006	409	cd10006, HDAC4, Histone deacetylase 4	0.004

>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10

 Score =  104 bits (261), Expect = 2e-27
 Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 13/92 (14%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M +TPA YAHL   L G A GK+ ++LEGGY L+SLAE  ++TLR LL DP P       
Sbjct: 258 MAVTPAGYAHLTRLLMGLAGGKLLLVLEGGYLLESLAESVSMTLRGLLGDPLPP------ 311

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYW 92
                  +   +   S+ ETILN I    P W
Sbjct: 312 -------LAPPIPIRSVLETILNAIAHLSPRW 336

Histone deacetylases 6 and 10 are class IIb Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. HDAC10 has an N-terminal deacetylase domain and a C-terminal pseudo-repeat that shares significant similarity with its catalytic domain. It is located in the nucleus and cytoplasm, and is involved in regulation of melanogenesis. It transcriptionally down-regulates thioredoxin-interacting protein (TXNIP), leading to altered reactive oxygen species (ROS) signaling in human gastric cancer cells. Known interaction partners of HDAC6 are alpha tubulin (substrate) and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD) while interaction partners of HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins. Length = 336

>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2

 Score = 84.7 bits (210), Expect = 5e-20
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTP 61
            +TP  YAH+ + L   A G+V VILEGGY L S++E  ++  + LL DP P  +    P
Sbjct: 268 KVTPEGYAHMTHMLMSLAGGRVIVILEGGYNLTSISESMSMCTKTLLGDPPPVLDLPRPP 327

Query: 62  SERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
                        SS  ++I N +  H+ YW   +
Sbjct: 328 C------------SSALKSINNVLQVHQKYWKSLR 350

Histone deacetylase 6 is a class IIb Zn-dependent enzyme that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. Known interaction partners of HDAC6 are alpha tubulin and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD). Length = 350

>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1

 Score = 81.4 bits (201), Expect = 6e-19
 Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 12/92 (13%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TPAC+AHL + L G A GK+ + LEGGY L+SLAEG   +L+ALL DPCP  E+ G 
Sbjct: 258 MAATPACFAHLTHLLMGLAGGKLILSLEGGYNLRSLAEGVCASLKALLGDPCPMLESPGA 317

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYW 92
           P    L        +S++ T    I    P+W
Sbjct: 318 PCRSAL--------ASVSCT----ISALEPFW 337

Histone deacetylases 6 are class IIb Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC6 is the only histone deacetylase with internal duplication of two catalytic domains which appear to function independently of each other, and also has a C-terminal ubiquitin-binding domain. It is located in the cytoplasm and associates with microtubule motor complex, functioning as the tubulin deacetylase and regulating microtubule-dependent cell motility. Known interaction partners of HDAC6 are alpha tubulin (substrate) and ubiquitin-like modifier FAT10 (also known as Ubiquitin D or UBD). Length = 337

>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10

 Score = 76.4 bits (188), Expect = 5e-17
 Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 12/92 (13%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
           M  TP C+AHL + L   A GK+  +LEGGY L+SLAE   +T++ LL DP P      T
Sbjct: 258 MCATPECFAHLTHLLMVLAGGKLCAVLEGGYHLESLAESVCMTVQTLLGDPLPRLSGEMT 317

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYW 92
           P +            S  E+I N      PYW
Sbjct: 318 PCQ------------SALESIQNVRAAQAPYW 337

Histone deacetylases 10 are class IIb Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. HDACs usually act via association with DNA binding proteins to target specific chromatin regions. HDAC10 has an N-terminal deacetylase domain and a C-terminal pseudo-repeat that shares significant similarity with its catalytic domain. It is located in the nucleus and cytoplasm, and is involved in regulation of melanogenesis. It transcriptionally down-regulates thioredoxin-interacting protein (TXNIP), leading to altered reactive oxygen species (ROS) signaling in human gastric cancer cells. Known interaction partners of HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins. Length = 337

>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP 53
             +TPA YAH+ + L   A GK+ V LEGGY L ++++ A    + LL +  P
Sbjct: 258 CHVTPAGYAHMTHMLMSLAGGKLVVALEGGYNLDAISDSALAVAKVLLGEAPP 310

Clr3 is a class II Histone deacetylase Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Clr3 is the homolog of the class-II HDAC HdaI in S. cerevisiae, and is essential for silencing in heterochromatin regions, such as centromeric regions, ribosomal DNA, the mating-type region and telomeric loci. Clr3 has also been implicated in the regulation of stress-related genes; the histone acetyltransferase, Gcn5, in S. cerevisiae, preferentially acetylates global histone H3K14 while Clr3 preferentially deacetylates H3K14ac, and therefore, interplay between Gcn5 and Clr3 is crucial for the regulation of many stress-response genes. Length = 313

>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL---DDPCPNFETLG 59
           ++PAC+ ++   L   A GKV + LEGGY L ++ + +   +RALL    DP    E   
Sbjct: 297 VSPACFGYMTRQLMNLAGGKVVLALEGGYDLTAICDASEACVRALLGDELDPLSEEELER 356

Query: 60  TPSERILFIYALLSFSSITETILNCIYEHRPYW 92
            P+             +   ++   I    PYW
Sbjct: 357 RPNP------------NAVTSLEKVIAIQSPYW 377

Class IIa histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) to yield deacetylated histones. This subclass includes animal HDAC4, HDAC5, HDAC7, and HDCA9. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, they have N-terminal regulatory domain with two or three conserved serine residues, phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC9 is involved in regulation of gene expression and dendritic growth in developing cortical neurons. It also plays a role in hematopoiesis. HDAC7 is involved in regulation of myocyte migration and differentiation. HDAC5 is involved in integration of chronic drug (cocaine) addiction and depression with changes in chromatin structure and gene expression. HDAC4 participates in regulation of chondrocyte hypertrophy and skeletogenesis. Length = 377

>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII

 Score = 53.7 bits (130), Expect = 5e-09
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 1   MDITPACYAHLLNSLTGFA----QGKVAVILEGGYCLKSLAEGAALTLRALL 48
           M++TP  YA L   L   A     G++  +LEGGY L++LAE     L ALL
Sbjct: 240 MNLTPEGYARLTRLLKELADEHCGGRLVFVLEGGYNLEALAESVLAVLEALL 291

Class II histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. This group includes animal HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and HDA15 as well as other eukaryotes, archaeal and bacterial histone-like deacetylases. Eukaryotic deacetylases mostly use histones (H2, H3, H4) as substrates for deacetylation; however, non-histone substrates are known (for example, tubulin). Substrates for prokaryotic histone-like deacetylases are not known. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Interaction partners of class II deacetylases include 14-3-3 proteins, MEF2 family of transcriptional factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6, HP1alpha and SUMO. Histone deacetylases play a role in the regulation of cell cycle, cell differentiation and survival. Class II mammalian HDACs are differentially inhibited by structurally diverse compounds with known antitumor activities, thus presenting them as potential drug targets for human diseases resulting from aberrant acetylation. Length = 291

>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain

 Score = 50.3 bits (121), Expect = 6e-08
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 1   MDITPACYAHLLNSLTGFA---QGKVAVILEGGYCLKSLAEGAALTLRALL 48
           +++T   YA     L   A    G V  +LEGGY L +LA  AA  L  LL
Sbjct: 250 LNLTTEGYAERTRLLLELADAYGGPVVSVLEGGYNLDALARSAAAVLAGLL 300

Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyze the removal of the acetyl group. Histone deacetylases are related to other proteins. Length = 300

>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD---PCPNFETLG 59
           +T  C+ HL   L   A G+V + LEGG+ L ++ + +   + ALL     P  N     
Sbjct: 300 VTAKCFGHLTKQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLGMELTPLDNTVLQQ 359

Query: 60  TPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
            P+             +   T+   I     +W+C K
Sbjct: 360 KPN------------DNAVATLERVIEIQSKHWSCLK 384

Histone deacetylase 5 is a class IIa Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, having N-terminal regulatory domain with two or three conserved serine residues; phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC5 is involved in integration of chronic drug (cocaine) addiction and depression with changes in chromatin structure and gene expression; cocaine regulates HDAC5 function to antagonize the rewarding impact of cocaine, possibly by blocking drug-stimulated gene expression that supports drug-induced behavioral change. It is also involved in regulation of angiogenesis and cell cycle as well as immune system development. HDAC5 and HDAC9 have been found to be significantly up-regulated in high-risk medulloblastoma compared with low-risk and may potentially be novel drug targets. Length = 420

>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 18  FAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
           +  G++  +LEGGY L +LA   A  +RAL+
Sbjct: 258 YCDGRIVSVLEGGYDLSALARSVAAHVRALM 288

This subfamily includes eukaryotic as well as bacterial Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. In D. discoideum, where four homologs (HdaA, HdaB, HdaC, HdaD) have been identified, HDAC activity is important for regulating the timing of gene expression during development. Also, inhibition of HDAC activity by trichostatin A is shown to cause hyperacetylation of the histone and a delay in cell aggregation and differentiation. Length = 288

>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 3   ITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
           +T  C+ HL   L   A G+V + LEGG+ L ++ + +   + ALL
Sbjct: 298 VTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALL 343

Histone deacetylase 9 is a class IIa Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, they have N-terminal regulatory domain with two or three conserved serine residues, phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC9 is involved in regulation of gene expression and dendritic growth in developing cortical neurons. It also plays a role in hematopoiesis. Its deregulated expression may be associated with some human cancers. HDAC5 and HDAC9 have been found to be significantly up-regulated in high-risk medulloblastoma compared with low-risk and may potentially be novel drug targets. Length = 379

>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCP 53
           +++  C+ +L   L G A G++ + LEGG+ L ++ + +   + ALL    DP P
Sbjct: 299 NLSAKCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLP 353

Histone deacetylase 4 is a class IIa Zn-dependent enzyme that catalyzes hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Class IIa histone deacetylases are signal-dependent co-repressors, having N-terminal regulatory domain with two or three conserved serine residues; phosphorylation of these residues is important for ability to shuttle between the nucleus and cytoplasm and act as transcriptional co-repressors. HDAC4 participates in regulation of chondrocyte hypertrophy and skeletogenesis. However, biological substrates for HDAC4 have not been identified; only low lysine deacetylation activity has been demonstrated and active site mutant has enhanced activity toward acetylated lysines. HDAC4 does not bind DNA directly, but through transcription factors MEF2C (myocyte enhancer factor-2C) and MEF2D. Other known interaction partners of the protein are 14-3-3 proteins, SMRT and N-CoR co-repressors, BCL6, HP1, SUMO-1 ubiquitin-like protein, and ANKRA2. It appears to interact in a multiprotein complex with RbAp48 and HDAC3. Furthermore, HDAC4 is required for TGFbeta1-induced myofibroblastic differentiation. Length = 409

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG1343|consensus	797		99.42
KOG1343|consensus	797		98.81
PTZ00346	429	histone deacetylase; Provisional	98.39
COG0123	340	AcuC Deacetylases, including yeast histone deacety	98.26
PTZ00063	436	histone deacetylase; Provisional	97.83
PF09757	178	Arb2: Arb2 domain; InterPro: IPR019154 The fission	84.22

>KOG1343|consensus

Probab=99.42  E-value=3.7e-13  Score=129.11  Aligned_cols=84  Identities=32%  Similarity=0.636  Sum_probs=75.1

Q ss_pred             ccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCC---CCCchHHHHHHhhhchhhHH
Q psy8284           2 DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETL---GTPSERILFIYALLSFSSIT   78 (170)
Q Consensus         2 ~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~---~~p~~~~~~~~~~~~~~~~~   78 (170)
                      .+|++||++||+.|+++|+||++++||||||+.+++++..+|+++|+|.+.|.+++.   ..|+.            .++
T Consensus       710 ~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~~~~~~~~~~~~~------------~a~  777 (797)
T KOG1343|consen  710 KVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPPLSEAYLPQKPNS------------NAV  777 (797)
T ss_pred             cccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCCccccccCCCcch------------HHH
Confidence            589999999999999999999999999999999999999999999999987765433   33333            689


Q ss_pred             HHHHHHHHHHcCCCCcccc
Q psy8284          79 ETILNCIYEHRPYWNCYKF   97 (170)
Q Consensus        79 etI~~v~~~h~~yWk~Lq~   97 (170)
                      .+|++++.+|++||+|++.
T Consensus       778 ~~l~~~~~~~~~~w~~~~~  796 (797)
T KOG1343|consen  778 ATLEKVIEVQSKYWSCLQG  796 (797)
T ss_pred             HHHHHHHHhhhcccccccC
Confidence            9999999999999999984

>KOG1343|consensus

Probab=98.81  E-value=4.2e-09  Score=101.51  Aligned_cols=90  Identities=30%  Similarity=0.503  Sum_probs=77.3

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHhhhchhhHHHH
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSSITET   80 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~~~~~~~~~~~~~~~~~et   80 (170)
                      |.+||.+|++++++.+-+.++++++++||||+++.++++ ..++..|+|++++.+.....|+.            ++.++
T Consensus       307 m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~~~~~~~~p~~------------~~~e~  373 (797)
T KOG1343|consen  307 MAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIEQLRQPGSPKE------------EAEEE  373 (797)
T ss_pred             ccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCccccccCCCchH------------HHHHH
Confidence            778999999999995555559999999999999999999 99999999998886655555666            88999


Q ss_pred             HHHHHHHHcCCCCccccccCccc
Q psy8284          81 ILNCIYEHRPYWNCYKFQDISTE  103 (170)
Q Consensus        81 I~~v~~~h~~yWk~Lq~~~~~~~  103 (170)
                      +..+...+.+||+|++.+.....
T Consensus       374 ~~~~~~~~~~~w~~~~~~~~~~~  396 (797)
T KOG1343|consen  374 LQSVQAVQEDRWPCEGGSTSADS  396 (797)
T ss_pred             hhhhHHHhhcccccccCCcchhh
Confidence            99999999999999997655444

>PTZ00346 histone deacetylase; Provisional

Probab=98.39  E-value=6e-07  Score=81.67  Aligned_cols=52  Identities=15%  Similarity=0.283  Sum_probs=48.8

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||++||.++++.++++ ++|++++|||||++.++++|+..++..|+|.+.+
T Consensus       289 l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~  340 (429)
T PTZ00346        289 LNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLP  340 (429)
T ss_pred             ceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCC
Confidence            689999999999999997 5899999999999999999999999999998755

>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.26  E-value=1.7e-06  Score=76.54  Aligned_cols=52  Identities=31%  Similarity=0.438  Sum_probs=48.2

Q ss_pred             CccCHHHHHHHHHHHhccC---CCcEEEEecCCCCcchhHHHHHHHHHHHcCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFA---QGKVAVILEGGYCLKSLAEGAALTLRALLDDPC   52 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA---~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~   52 (170)
                      |+||.++|.+++++++++|   +++++++|||||++++++.++.+++..|.|.+.
T Consensus       260 ~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~  314 (340)
T COG0123         260 LNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLVE  314 (340)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCCc
Confidence            6899999999999999998   469999999999999999999999999999653

>PTZ00063 histone deacetylase; Provisional

Probab=97.83  E-value=3.3e-05  Score=70.63  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=46.0

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDD   50 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~   50 (170)
                      |+||.+||+.+++.++++ ++++++++||||++.++++|+......++|.
T Consensus       271 l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar~w~~~t~~~~~~  319 (436)
T PTZ00063        271 FNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVARCWAYETGVILNK  319 (436)
T ss_pred             cccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHHHHHHHHHHHhCC
Confidence            589999999999999996 5899999999999999999999999999985

>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []

Probab=84.22  E-value=0.89  Score=36.36  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHcCCCCcccc
Q psy8284          76 SITETILNCIYEHRPYWNCYKF   97 (170)
Q Consensus        76 ~~~etI~~v~~~h~~yWk~Lq~   97 (170)
                      ++.+++.+++..|++||+||..
T Consensus        13 ~a~~~v~~v~~~qs~yw~~l~~   34 (178)
T PF09757_consen   13 SAFETVKNVRRIQSKYWKCLNP   34 (178)
T ss_dssp             HHHHHHHHHHHHHTTT-GGGTS
T ss_pred             HHeeeHHHHHHHHHHHHHHhcC
Confidence            8899999999999999999964

This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
2vqw_G	413	Structure Of Inhibitor-Free Hdac4 Catalytic Domain		4e-04
2vqo_A	413	Structure Of Hdac4 Catalytic Domain With A Gain-Of-		5e-04

>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
           +++  C+ +L   L G A G++ + LEGGY L ++ + +   + ALL    DP P     
Sbjct: 303 NLSARCFGYLTKQLMGLAGGRIVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQ 362
Query: 59  GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEG 104
             P+       A+ S   + E        H  YW C + +  ST G
Sbjct: 363 QRPNAN-----AVRSMEKVMEI-------HSKYWRCLQ-RTTSTAG 395

>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 2   DITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD---DPCPNFETL 58
           +++  C+ +L   L G A G++ + LEGGY L ++ + +   + ALL    DP P     
Sbjct: 303 NLSARCFGYLTKQLMGLAGGRIVLALEGGYDLTAICDASEACVSALLGNELDPLPEKVLQ 362
Query: 59  GTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYKFQDISTEG 104
             P+       A+ S   + E        H  YW C + +  ST G
Sbjct: 363 QRPNAN-----AVRSMEKVMEI-------HSKYWRCLQ-RTTSTAG 395

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2pqp_A	421	HD7A, histone deacetylase 7A; HDAC, structural gen	1e-19
1zz1_A	369	Histone deacetylase-like amidohydrolase; HET: SHH;	7e-12
3men_A	362	Acetylpolyamine aminohydrolase; histone deacetylas	6e-08
3q9b_A	341	Acetylpolyamine amidohydrolase; HDAC, polyamines,	5e-07
1c3p_A	375	Protein (HDLP (histone deacetylase-like protein) )	2e-05
4a69_A	376	Histone deacetylase 3,; transcription, hydrolase;	7e-05
3max_A	367	HD2, histone deacetylase 2; class 2, HDAC, foot po	8e-05
3ew8_A	388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	3e-04

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 1   MDITPACYAHLLNSLTGFA----QGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFE 56
           M +T   +  +       A     G++  + EGGY    L       +  L         
Sbjct: 278 MMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVR----- 332

Query: 57  TLGTPSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
              +  +      A +  +++ +     I E  P     +
Sbjct: 333 ---SLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADIR 369

>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLD 49
           + +T   +  L + +         ++ EGGY ++SL   A         
Sbjct: 312 VAVTTDGFGRLGHLIGALR-LPTVIVQEGGYHIESLEANARSFFGGFGA 359

>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALL 48
             +T   Y  +  ++   +   + V++EGGY +  +    A  L+ + 
Sbjct: 294 FKLTSPDYITMGRTIAA-SGVPLLVVMEGGYGVPEIGLNVANVLKGVA 340

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            +++   +    N +     G+   +  GGY   +LA    L    L     P 
Sbjct: 268 FNLSNVAFLKAFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVPE 320

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            +++   +   +  +  F    + V+  GGY ++++A         L+++    
Sbjct: 269 FNLSIRGHGECVEYVKSFN-IPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            ++T   +A  +  +  F    + ++  GGY ++++A          LD   PN
Sbjct: 268 FNLTVKGHAKCVEVVKTFN-LPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            ++TP      L  +  +      ++  GGY L + A         +L     +
Sbjct: 277 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 329

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2pqp_A	421	HD7A, histone deacetylase 7A; HDAC, structural gen	99.73
2vqm_A	413	HD4, histone deacetylase 4; inhibitor, repressor,	99.63
1zz1_A	369	Histone deacetylase-like amidohydrolase; HET: SHH;	98.88
1c3p_A	375	Protein (HDLP (histone deacetylase-like protein) )	98.55
4a69_A	376	Histone deacetylase 3,; transcription, hydrolase;	98.4
3max_A	367	HD2, histone deacetylase 2; class 2, HDAC, foot po	98.26
3ew8_A	388	HD8, histone deacetylase 8; hydrolase, HDAC, metal	98.25

>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*

Probab=99.63  E-value=5.4e-16  Score=138.07  Aligned_cols=86  Identities=22%  Similarity=0.515  Sum_probs=75.1

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCC---CCCCchHHHHHHhhhchhhH
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFET---LGTPSERILFIYALLSFSSI   77 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~---~~~p~~~~~~~~~~~~~~~~   77 (170)
                      |+||+++|++++++|+++|+||++++||||||+.++++|+.+++++|+|.+.++++.   ...|+.            ++
T Consensus       302 ~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~~~~~p~~------------~~  369 (413)
T 2vqm_A          302 YNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNA------------NA  369 (413)
T ss_dssp             CCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHHHHCCCCH------------HH
T ss_pred             cccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhhhhcCCCh------------HH
Confidence            689999999999999999999999999999999999999999999999987554321   123444            78


Q ss_pred             HHHHHHHHHHHcCCCCccccc
Q psy8284          78 TETILNCIYEHRPYWNCYKFQ   98 (170)
Q Consensus        78 ~etI~~v~~~h~~yWk~Lq~~   98 (170)
                      .++|.+++.+|++||+||+..
T Consensus       370 ~~~~~~v~~~~~~~W~~l~~~  390 (413)
T 2vqm_A          370 VRSMEKVMEIHSKYWRCLQRT  390 (413)
T ss_dssp             HHHHHHHHHHHHTTCGGGTSC
T ss_pred             HHHHHHHHHHHHHHhhhhhcc
Confidence            999999999999999999964

>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*

Probab=98.88  E-value=2.3e-09  Score=94.20  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=62.3

Q ss_pred             CccCHHHHHHHHHHHhccC----CCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCCCCCCchHHHHHHhhhchhh
Q psy8284           1 MDITPACYAHLLNSLTGFA----QGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERILFIYALLSFSS   76 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA----~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~~~~p~~~~~~~~~~~~~~~   76 (170)
                      |+||+++|++++++|+++|    +||++++|||||+++++++|+.+++++|+|.+.  +.   .|-..  ... .-+.++
T Consensus       278 l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~--~~---~p~~~--~~~-~~~~~~  349 (369)
T 1zz1_A          278 MMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS--LP---DPYHE--FLA-GMGGNT  349 (369)
T ss_dssp             CBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC--CC---CTTHH--HHH-TTCCCS
T ss_pred             cccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC--CC---CchhH--HHh-hccccc
Confidence            6899999999999999886    789999999999999999999999999999764  11   11110  000 111124


Q ss_pred             HHHHHHHHHHHHcCCC
Q psy8284          77 ITETILNCIYEHRPYW   92 (170)
Q Consensus        77 ~~etI~~v~~~h~~yW   92 (170)
                      ..+.+.+++...+++|
T Consensus       350 ~~~~~~~~i~~~~~~~  365 (369)
T 1zz1_A          350 LLDAERAAIEEIVPLL  365 (369)
T ss_dssp             CCHHHHHHHHTTGGGG
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            4556667777777777

>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*

Probab=98.55  E-value=5.9e-08  Score=85.41  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||+++|++++++|+++|. +++++|||||++.++++|+.+++++|+|.+.+
T Consensus       268 l~lt~~g~~~~~~~l~~~a~-~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~  319 (375)
T 1c3p_A          268 FNLSNVAFLKAFNIVREVFG-EGVYLGGGGYHPYALARAWTLIWCELSGREVP  319 (375)
T ss_dssp             CCBCHHHHHHHHHHHHHHHC-SCEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccCHHHHHHHHHHHHHhcc-ceEEEECCCCChHHHHHHHHHHHHHHcCCCCC
Confidence            68999999999999999984 69999999999999999999999999998755

>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}

Probab=98.40  E-value=5.3e-07  Score=79.50  Aligned_cols=52  Identities=13%  Similarity=0.264  Sum_probs=48.6

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||++||+++++.++++ ++|+++++||||++.++++|+......|+|.+.+
T Consensus       269 l~Lt~~g~~~~~~~l~~~-~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~  320 (376)
T 4a69_A          269 FNLSIRGHGECVEYVKSF-NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS  320 (376)
T ss_dssp             CBBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             eecCHHHHHHHHHHHHHc-CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCcc
Confidence            689999999999999998 5899999999999999999999999999998755

>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}

Probab=98.26  E-value=1.4e-06  Score=76.63  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=48.5

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||++||+++++.++++ ++|+++++||||++.++++|+......++|.+.|
T Consensus       268 ~~lt~~g~~~~~~~~~~~-~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~  319 (367)
T 3max_A          268 FNLTVKGHAKCVEVVKTF-NLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP  319 (367)
T ss_dssp             CCBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             eeeCHHHHHHHHHHHHhc-CCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence            689999999999999997 6899999999999999999999999999998755

>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*

Probab=98.25  E-value=1.6e-06  Score=76.72  Aligned_cols=52  Identities=17%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||++||+++++.|+++. .++++++||||++.++++|+..+...|+|.+.+
T Consensus       277 l~lt~~g~~~~~~~l~~~~-~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l~  328 (388)
T 3ew8_A          277 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLS  328 (388)
T ss_dssp             CCBCHHHHHHHHHHHHTTC-CEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CcCCHHHHHHHHHHHHhcC-CCEEEEECCCCChhHHHHHHHHHHHHHcCCCCC
Confidence            6899999999999999874 799999999999999999999999999998755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d3c10a1	386	c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7	3e-14
d1c3pa_	372	c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta	3e-07
d1t64a_	364	c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human	3e-05

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFETLGT 60
             ++  C+ ++   L   A G V + LEGG+ L ++ + +   + ALL +        G 
Sbjct: 299 YHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEG- 357

Query: 61  PSERILFIYALLSFSSITETILNCIYEHRPYWNCYK 96
                   +      +   ++   I  H  YW C +
Sbjct: 358 --------WKQKPNLNAIRSLEAVIRVHSKYWGCMQ 385

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            +++   +    N +     G+   +  GGY   +LA    L    L     P 
Sbjct: 267 FNLSNVAFLKAFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVPE 319

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPN 54
            ++TP      L  +  +      ++  GGY L + A         +L     +
Sbjct: 264 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 316

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d3c10a1	386	Histone deacetylase 7, HDAC7 {Human (Homo sapiens)	99.66
d1c3pa_	372	HDAC homologue {Aquifex aeolicus [TaxId: 63363]}	98.77
d1t64a_	364	Histone deacetylase 8, HDAC8 {Human (Homo sapiens)	98.5

>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 7, HDAC7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9e-17  Score=139.26  Aligned_cols=84  Identities=23%  Similarity=0.494  Sum_probs=74.5

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCCCCCC---CCCCchHHHHHHhhhchhhH
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCPNFET---LGTPSERILFIYALLSFSSI   77 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p~l~~---~~~p~~~~~~~~~~~~~~~~   77 (170)
                      |+||+++|.+|+++|+++|+||++++||||||++++++|+.+++++|+|++.+++.+   ...|+.            +.
T Consensus       299 l~lt~~~~~~~~~~l~~~~~~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~------------~~  366 (386)
T d3c10a1         299 YHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNL------------NA  366 (386)
T ss_dssp             CBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHHTCCCCGGGCSGGGSCCCH------------HH
T ss_pred             CccCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHHHHHhCCCCCCCCccccccCCCH------------HH
Confidence            689999999999999999999999999999999999999999999999987664432   234444            77


Q ss_pred             HHHHHHHHHHHcCCCCccc
Q psy8284          78 TETILNCIYEHRPYWNCYK   96 (170)
Q Consensus        78 ~etI~~v~~~h~~yWk~Lq   96 (170)
                      .++|++++.+|++||+|||
T Consensus       367 ~~~l~~~~~~~~~~w~~~~  385 (386)
T d3c10a1         367 IRSLEAVIRVHSKYWGCMQ  385 (386)
T ss_dssp             HHHHHHHHHHHTTTCGGGC
T ss_pred             HHHHHHHHHHHHHhhHhhc
Confidence            8999999999999999997

>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: HDAC homologue
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.77  E-value=2.4e-09  Score=91.88  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||+++|.+++++|++++ ||++++||||||+.++++|+.+++.+|+|.+.|
T Consensus       267 l~lt~~~~~~~~~~~~~~~-~~~~~vleGGY~~~~~a~~~~~~~~~l~g~~~~  318 (372)
T d1c3pa_         267 FNLSNVAFLKAFNIVREVF-GEGVYLGGGGYHPYALARAWTLIWCELSGREVP  318 (372)
T ss_dssp             CCBCHHHHHHHHHHHHHHH-CSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CcCCHHHHHHHHHHHHHhC-CCeEEEEcCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            6899999999999999997 899999999999999999999999999998755

>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.7e-08  Score=81.88  Aligned_cols=52  Identities=17%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CccCHHHHHHHHHHHhccCCCcEEEEecCCCCcchhHHHHHHHHHHHcCCCCC
Q psy8284           1 MDITPACYAHLLNSLTGFAQGKVAVILEGGYCLKSLAEGAALTLRALLDDPCP   53 (170)
Q Consensus         1 m~vT~~gy~~lt~~L~~lA~grvv~vLEGGY~l~~la~sv~a~l~~Llg~~~p   53 (170)
                      |+||++||++++++|++++ +++++++|||||+.++++|...+...|+|.+.+
T Consensus       264 ~~lt~~g~~~~~~~l~~~~-~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~  315 (364)
T d1t64a_         264 FNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLS  315 (364)
T ss_dssp             CCBCHHHHHHHHHHHHTTC-CEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CcCCHHHHHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCC
Confidence            6899999999999999986 799999999999999999999999999998755